Metabolic activity of subseafloor microbes in the South Pacific Gyre

NASA Astrophysics Data System (ADS)

Morono, Y.; Ito, M.; Terada, T.; Inagaki, F.

2013-12-01

The South Pacific Gyre (SPG) is characterized as the most oligotrophic open ocean environment. The sediment is rich in oxygen but poor in energy-sources such as reduced organic matter, and hence harbors very low numbers of microbial cells in relatively shallow subseafloor sediment (D'Hondt et al., 2009; Kallmeyer et al., 2012). In such an energy-limited sedimentary habitat, a small size of microbial community persists living functions with extraordinary low oxygen-consumption rate (Røy et al., 2012). During IODP Expedition 329, a series of sediment samples were successfully recovered from 7 drill sites (U1365-1371) from the seafloor to basement in the SPG, providing an unprecedented opportunity to study metabolic activity of the aerobic subseafloor microbial communities. We initiated incubation onboard by adding stable isotope-labeled substrates to the freshly collected sediment sample, such as 13C and/or 15N-labeled bicarbonate, glucose, amino acids, acetate, and ammonium under the (micro-) aerobic condition. One of the technological challenges in this study is to harvest microbial cells from very low-biomass sediment samples for the analysis using nano-scale secondary ion mass spectrometry (NanoSIMS). To address the technical issue, we improved existing cell separation technique for the SPG sediment samples with small inorganic zeolitic grains. By monitoring cell recovery rates through an image-based cell enumeration technique (Morono et al., 2009), we found that cell recovery rates in the SPG sediment samples are generally lower than those in other oceanographic settings (i.e., organic-rich ocean margin sediments). To gain higher cell recovery ratio, we applied multiple density gradient layers, resulting in the cell recovery ratio up to around 80-95% (Morono et al., in press). Then, using the newly developed cell separation technique, we successfully sorted enough number of microbial cells in small spots on the membrane (i.e., 103 to 105 cells per spot). Nano

Hot-Alkaline DNA Extraction Method for Deep-Subseafloor Archaeal Communities

PubMed Central

Terada, Takeshi; Hoshino, Tatsuhiko; Inagaki, Fumio

2014-01-01

A prerequisite for DNA-based microbial community analysis is even and effective cell disruption for DNA extraction. With a commonly used DNA extraction kit, roughly two-thirds of subseafloor sediment microbial cells remain intact on average (i.e., the cells are not disrupted), indicating that microbial community analyses may be biased at the DNA extraction step, prior to subsequent molecular analyses. To address this issue, we standardized a new DNA extraction method using alkaline treatment and heating. Upon treatment with 1 M NaOH at 98°C for 20 min, over 98% of microbial cells in subseafloor sediment samples collected at different depths were disrupted. However, DNA integrity tests showed that such strong alkaline and heat treatment also cleaved DNA molecules into short fragments that could not be amplified by PCR. Subsequently, we optimized the alkaline and temperature conditions to minimize DNA fragmentation and retain high cell disruption efficiency. The best conditions produced a cell disruption rate of 50 to 80% in subseafloor sediment samples from various depths and retained sufficient DNA integrity for amplification of the complete 16S rRNA gene (i.e., ∼1,500 bp). The optimized method also yielded higher DNA concentrations in all samples tested compared with extractions using a conventional kit-based approach. Comparative molecular analysis using real-time PCR and pyrosequencing of bacterial and archaeal 16S rRNA genes showed that the new method produced an increase in archaeal DNA and its diversity, suggesting that it provides better analytical coverage of subseafloor microbial communities than conventional methods. PMID:24441163

Carbon and nitrogen assimilation in deep subseafloor microbial cells.

PubMed

Morono, Yuki; Terada, Takeshi; Nishizawa, Manabu; Ito, Motoo; Hillion, François; Takahata, Naoto; Sano, Yuji; Inagaki, Fumio

2011-11-08

Remarkable numbers of microbial cells have been observed in global shallow to deep subseafloor sediments. Accumulating evidence indicates that deep and ancient sediments harbor living microbial life, where the flux of nutrients and energy are extremely low. However, their physiology and energy requirements remain largely unknown. We used stable isotope tracer incubation and nanometer-scale secondary ion MS to investigate the dynamics of carbon and nitrogen assimilation activities in individual microbial cells from 219-m-deep lower Pleistocene (460,000 y old) sediments from the northwestern Pacific off the Shimokita Peninsula of Japan. Sediment samples were incubated in vitro with (13)C- and/or (15)N-labeled glucose, pyruvate, acetate, bicarbonate, methane, ammonium, and amino acids. Significant incorporation of (13)C and/or (15)N and growth occurred in response to glucose, pyruvate, and amino acids (∼76% of total cells), whereas acetate and bicarbonate were incorporated without fostering growth. Among those substrates, a maximum substrate assimilation rate was observed at 67 × 10(-18) mol/cell per d with bicarbonate. Neither carbon assimilation nor growth was evident in response to methane. The atomic ratios between nitrogen incorporated from ammonium and the total cellular nitrogen consistently exceeded the ratios of carbon, suggesting that subseafloor microbes preferentially require nitrogen assimilation for the recovery in vitro. Our results showed that the most deeply buried subseafloor sedimentary microbes maintain potentials for metabolic activities and that growth is generally limited by energy but not by the availability of C and N compounds.

Carbon and nitrogen assimilation in deep subseafloor microbial cells

PubMed Central

Morono, Yuki; Terada, Takeshi; Nishizawa, Manabu; Ito, Motoo; Hillion, François; Takahata, Naoto; Sano, Yuji; Inagaki, Fumio

2011-01-01

Remarkable numbers of microbial cells have been observed in global shallow to deep subseafloor sediments. Accumulating evidence indicates that deep and ancient sediments harbor living microbial life, where the flux of nutrients and energy are extremely low. However, their physiology and energy requirements remain largely unknown. We used stable isotope tracer incubation and nanometer-scale secondary ion MS to investigate the dynamics of carbon and nitrogen assimilation activities in individual microbial cells from 219-m-deep lower Pleistocene (460,000 y old) sediments from the northwestern Pacific off the Shimokita Peninsula of Japan. Sediment samples were incubated in vitro with 13C- and/or 15N-labeled glucose, pyruvate, acetate, bicarbonate, methane, ammonium, and amino acids. Significant incorporation of 13C and/or 15N and growth occurred in response to glucose, pyruvate, and amino acids (∼76% of total cells), whereas acetate and bicarbonate were incorporated without fostering growth. Among those substrates, a maximum substrate assimilation rate was observed at 67 × 10−18 mol/cell per d with bicarbonate. Neither carbon assimilation nor growth was evident in response to methane. The atomic ratios between nitrogen incorporated from ammonium and the total cellular nitrogen consistently exceeded the ratios of carbon, suggesting that subseafloor microbes preferentially require nitrogen assimilation for the recovery in vitro. Our results showed that the most deeply buried subseafloor sedimentary microbes maintain potentials for metabolic activities and that growth is generally limited by energy but not by the availability of C and N compounds. PMID:21987801

A deep oxic ecosystem in the subseafloor South Pacific Gyre

NASA Astrophysics Data System (ADS)

D'Hondt, S. L.; Inagaki, F.; Alvarez Zarikian, C. A.; Integrated Ocean Drilling Program Expedition 329 Shipboard Scientific Party

2011-12-01

Scientific ocean drilling has demonstrated the occurrence of rich microbial communities, abundant active cells and diverse anaerobic activities in anoxic subseafloor sediment. Buried organic matter from the surface photosynthetic world sustains anaerobic heterotrophs in anoxic sediment as deeply buried as 1.6 km below the seafloor. However, these studies have been mostly restricted to the organic-rich sediment of continental margins and biologically productive regions. IODP Expedition 329 discovered that subseafloor habitat and life are fundamentally different in the vast expanse of organic-poor sediment that underlies Earth's largest oceanic province, the South Pacific Gyre (SPG). Dissolved O2 and dissolved major nutrients (C, N, P) are present throughout the entire sediment sequence and the upper basaltic basement of the SPG. The drilled sediment is up to 75 m thick. Although heterotrophic O2 reduction (aerobic respiration) persists for millions of years in SPG sediment (which accumulates very slowly), it falls below minimum detection just a few meters to tens of meters beneath the SPG seafloor. Cell concentrations approach minimum detection at similar depths, but are intermittently detectable throughout the entire sediment sequence. In situ radiolysis of water may be a significant source of energy for the microbes that inhabit the deepest (oldest) sediment.

Atribacteria from the Subseafloor Sedimentary Biosphere Disperse to the Hydrosphere through Submarine Mud Volcanoes.

PubMed

Hoshino, Tatsuhiko; Toki, Tomohiro; Ijiri, Akira; Morono, Yuki; Machiyama, Hideaki; Ashi, Juichiro; Okamura, Kei; Inagaki, Fumio

2017-01-01

Submarine mud volcanoes (SMVs) are formed by muddy sediments and breccias extruded to the seafloor from a source in the deep subseafloor and are characterized by the discharge of methane and other hydrocarbon gasses and deep-sourced fluids into the overlying seawater. Although SMVs act as a natural pipeline connecting the Earth's surface and subsurface biospheres, the dispersal of deep-biosphere microorganisms and their ecological roles remain largely unknown. In this study, we investigated the microbial communities in sediment and overlying seawater at two SMVs located on the Ryukyu Trench off Tanegashima Island, southern Japan. The microbial communities in mud volcano sediments were generally distinct from those in the overlying seawaters and in the well-stratified Pacific margin sediments collected at the Peru Margin, the Juan de Fuca Ridge flank off Oregon, and offshore of Shimokita Peninsula, northeastern Japan. Nevertheless, in-depth analysis of different taxonomic groups at the sub-species level revealed that the taxon affiliated with Atribacteria , heterotrophic anaerobic bacteria that typically occur in organic-rich anoxic subseafloor sediments, were commonly found not only in SMV sediments but also in the overlying seawater. We designed a new oligonucleotide probe for detecting Atribacteria using the catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH). CARD-FISH, digital PCR and sequencing analysis of 16S rRNA genes consistently showed that Atribacteria are abundant in the methane plumes of the two SMVs (0.58 and 1.5 × 10 4 cells/mL, respectively) but not in surrounding waters, suggesting that microbial cells in subseafloor sediments are dispersed as "deep-biosphere seeds" into the ocean. These findings may have important implications for the microbial transmigration between the deep subseafloor biosphere and the hydrosphere.

Atribacteria from the Subseafloor Sedimentary Biosphere Disperse to the Hydrosphere through Submarine Mud Volcanoes

PubMed Central

Hoshino, Tatsuhiko; Toki, Tomohiro; Ijiri, Akira; Morono, Yuki; Machiyama, Hideaki; Ashi, Juichiro; Okamura, Kei; Inagaki, Fumio

2017-01-01

Submarine mud volcanoes (SMVs) are formed by muddy sediments and breccias extruded to the seafloor from a source in the deep subseafloor and are characterized by the discharge of methane and other hydrocarbon gasses and deep-sourced fluids into the overlying seawater. Although SMVs act as a natural pipeline connecting the Earth’s surface and subsurface biospheres, the dispersal of deep-biosphere microorganisms and their ecological roles remain largely unknown. In this study, we investigated the microbial communities in sediment and overlying seawater at two SMVs located on the Ryukyu Trench off Tanegashima Island, southern Japan. The microbial communities in mud volcano sediments were generally distinct from those in the overlying seawaters and in the well-stratified Pacific margin sediments collected at the Peru Margin, the Juan de Fuca Ridge flank off Oregon, and offshore of Shimokita Peninsula, northeastern Japan. Nevertheless, in-depth analysis of different taxonomic groups at the sub-species level revealed that the taxon affiliated with Atribacteria, heterotrophic anaerobic bacteria that typically occur in organic-rich anoxic subseafloor sediments, were commonly found not only in SMV sediments but also in the overlying seawater. We designed a new oligonucleotide probe for detecting Atribacteria using the catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH). CARD-FISH, digital PCR and sequencing analysis of 16S rRNA genes consistently showed that Atribacteria are abundant in the methane plumes of the two SMVs (0.58 and 1.5 × 104 cells/mL, respectively) but not in surrounding waters, suggesting that microbial cells in subseafloor sediments are dispersed as “deep-biosphere seeds” into the ocean. These findings may have important implications for the microbial transmigration between the deep subseafloor biosphere and the hydrosphere. PMID:28676800

Relationship of subseafloor microbial diversity to sediment age and organic carbon content

NASA Astrophysics Data System (ADS)

Walsh, E. A.; Kirkpatrick, J. B.; Sogin, M. L.; D'Hondt, S. L.

2013-12-01

Our tag pyrosequencing investigation of four globally distant sites reveals sediment age and total organic carbon content to be significant components in understanding subseafloor diversity. Our sampling locations include two sites from high-productivity regions (Indian Ocean and Bering Sea) and two from moderate-productivity (eastern and central equatorial Pacific Ocean). Sediment from the high-productivity sites has much higher TOC than sediment from the moderate-productivity equatorial sites. We applied a high-resolution 16S V4-V6 tag pyrosequencing approach to 24 bacterial and 17 archaeal samples, totaling 602,502 reads. We identified1,291 archaeal and 15,910 bacterial OTUs (97%) from these reads. We analyzed bacterial samples from all four sites in addition to archaeal samples from our high productivity sites. These high productivity, high TOC sites have a pronounced methane-rich sulfate-free zone at depth from which archaea have been previously considered to dominate (Biddle et al., 2006). At all four locations, microbial diversity is highest near the seafloor and drops rapidly to low but stable values with increasing sediment depth. The depth at which diversity stabilizes varies greatly from site to site, but the age at which it stabilizes is relatively constant. At all four sites, diversity reaches low stable values a few hundred thousand years after sediment deposition. The sites with high total organic carbon (high productivity sites) generally exhibit higher diversity at each sediment age than the sites with lower total organic carbon (moderate-productivity sites). Archaeal diversity is lower than bacterial diversity at every sampled depth. Biddle, J.F., Lipp, J.S., Lever, M.A., Lloyd, K.G., Sørensen, K.B., Anderson, R. et al. (2006) Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. PNAS 103: 3846-3851.

Sediment chemoautotrophy in the coastal ocean

NASA Astrophysics Data System (ADS)

Vasquez-Cardenas, Diana; Meysman, Filip J. R.; van Breugel, Peter; Boschker, Henricus T. S.

2016-04-01

A key process in the biogeochemistry of coastal sediments is the reoxidation of reduced intermediates formed during anaerobic mineralization which in part is performed by chemoautotrophic micro-organisms. These microbes fix inorganic carbon using the energy derived from reoxidation reactions and in doing so can fix up to 32% of the CO2 released by mineralization. However the importance and distribution of chemoautotrophy has not been systematically investigated in these environments. To address these issues we surveyed nine coastal sediments by means of bacterial biomarker analysis (phospholipid derived fatty acids) combined with stable isotope probing (13C-bicarbonate) which resulted in an almost doubling of the number of observations on coastal sedimentary chemoautotrophy. Firstly, sediment chemoautotrophy rates from this study and rates compiled from literature (0.07 to 36 mmol C m-2 d-1) showed a power-law relation with benthic oxygen uptake (3.4 to 192 mmol O2 m-2 d-1). Benthic oxygen uptake was used as a proxy for carbon mineralization to calculate the ratio of the CO2 fixed by chemoautotrophy over the total CO2 released through mineralization. This CO2 efficiency was 3% in continental shelf, 9% in nearshore and 21% in salt marsh sediments. These results suggest that chemoautotrophy plays an important role in C-cycling in reactive intertidal sediments such as salt marshes rather than in the organic-poor, permeable continental shelf sediments. Globally in the coastal ocean our empirical results show that chemoautotrophy contributes ˜0.05 Pg C y-1 which is four times less than previous estimates. Secondly, five coastal sediment regimes were linked to the depth-distribution of chemoautotrophy: 1) permeable sediments dominated by advective porewater transport, 2) bioturbated sediments, and cohesive sediments dominated by diffusive porewater transport characterized by either 3) canonical sulfur oxidation, 4) nitrate-storing Beggiatoa, or 5) electrogenic sulfur

Workshop discusses community models for coastal sediment transport

NASA Astrophysics Data System (ADS)

Sherwood, Christopher R.; Signell, Richard P.; Harris, Courtney K.; Butman, Bradford

Numerical models of coastal sediment transport are increasingly used to address problems ranging from remediation of contaminated sediments, to siting of sewage outfalls and disposal sites, to evaluating impacts of coastal development. They are also used as a test bed for sediment-transport algorithms, to provide realistic settings for biological and geochemical models, and for a variety of other research, both fundamental and applied. However, there are few full-featured, publicly available coastal sediment-transport models, and fewer still that are well tested and have been widely applied.This was the motivation for a workshop in Woods Hole, Massachusetts, on June 22-23, 2000, that explored the establishment of community models for coastal sediment-transport processes.

A NATIONAL COASTAL ASSESSMENT OF COASTAL SEDIMENT CONDITION

EPA Science Inventory

One element of the Environmental Monitoring and Assessment Program's National Coastal Assessment is to estimate the current status, extent, changes and trends in the condition of the Nation's coastal sediments on a national basis. Based on NCA monitoring activities from 1999-2001...

Coastal erosion vs riverline sediment discharge in the Arctic shelfx seas

USGS Publications Warehouse

Rachold, V.; Grigoriev, M.N.; Are, F.E.; Solomon, Sean C.; Reimnitz, E.; Kassens, H.; Antonow, M.

2000-01-01

This article presents a comparison of sediment input by rivers and by coastal erosion into both the Laptev Sea and the Canadian Beaufort Sea (CBS). New data on coastal erosion in the Laptev Sea, which are based on field measurements and remote sensing information and existing data on coastal erosion in the CBS as well as riverine sediment discharge into both the Laptev Sea and the CBS are included. Strong regional differences in the percentages of coastal ero- sion and riverine sediment supply are observed. The CBS is dominated by the riverine sediment discharge (64.45x106 t a-1) mainly of the Mackenzie River. which is the largest single source of sediments in the Arctic. Riverine sediment discharge into the Laptev Sea amounts to 24.10x106 t a-1, more than 70% of which are related to the Lena River. In comparison with the CBS. the Laptev Sea coast on average delivers approximately twice as much sediment mass per kilometer, a result of higher erosion rates due to higher cliffs and seasonal ice melting. In the Laptev Sea sediment input by coastal erosion (58.4x106 t a-1) is therefore more important than in the CBS and the ratio between riverine and coastal sediment input amounts to 0.4. Coastal erosion supplying 5.6x106 t a-1 is less significant for the sediment budget of the CBS where riverine sediment discharge exceeds coastal sediment input by a factor of ca. 10.

Geofilum rubicundum gen. nov., sp. nov., isolated from deep subseafloor sediment.

PubMed

Miyazaki, Masayuki; Koide, Osamu; Kobayashi, Tohru; Mori, Kozue; Shimamura, Shigeru; Nunoura, Takuro; Imachi, Hiroyuki; Inagaki, Fumio; Nagahama, Takahiko; Nogi, Yuichi; Deguchi, Shigeru; Takai, Ken

2012-05-01

A novel, facultatively anaerobic bacterium (strain JAM-BA0501(T)) was isolated from a deep subseafloor sediment sample at a depth of 247 m below seafloor off the Shimokita Peninsula of Japan in the north-western Pacific Ocean (Site C9001, 1180 m water depth). Cells of strain JAM-BA0501(T) were gram-negative, filamentous, non-spore-forming and motile on solid medium by gliding. Phylogenetic analysis based on the 16S rRNA gene sequence of strain JAM-BA0501(T) indicated a distant relationship to strains representing genera within the order Bacteroidales, such as Alkaliflexus imshenetskii Z-7010(T) (91.1 % similarity), Marinilabilia salmonicolor ATCC 19041(T) (86.2 %) and Anaerophaga thermohalophila Fru22(T) (89.3 %). The new isolate produced isoprenoid quinones with menaquinone MK-7 as the major component, and the predominant fatty acids were iso-C(15 : 0) and anteiso-C(15 : 0). The DNA G+C content of the isolate was 42.9 mol%. Based on its taxonomic distinctiveness, strain JAM-BA0501(T) is considered to represent a novel species of a new genus within the family Marinilabiliaceae, for which the name Geofilum rubicundum gen. nov., sp. nov. is proposed. The type strain of Geofilum rubicundum is JAM-BA0501(T) ( = JCM 15548(T)  = NCIMB 14482(T)).

Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG)

PubMed Central

Parkes, R John; Sellek, Gerard; Webster, Gordon; Martin, Derek; Anders, Erik; Weightman, Andrew J; Sass, Henrik

2009-01-01

Deep subseafloor sediments may contain depressurization-sensitive, anaerobic, piezophilic prokaryotes. To test this we developed the DeepIsoBUG system, which when coupled with the HYACINTH pressure-retaining drilling and core storage system and the PRESS core cutting and processing system, enables deep sediments to be handled without depressurization (up to 25 MPa) and anaerobic prokaryotic enrichments and isolation to be conducted up to 100 MPa. Here, we describe the system and its first use with subsurface gas hydrate sediments from the Indian Continental Shelf, Cascadia Margin and Gulf of Mexico. Generally, highest cell concentrations in enrichments occurred close to in situ pressures (14 MPa) in a variety of media, although growth continued up to at least 80 MPa. Predominant sequences in enrichments were Carnobacterium, Clostridium, Marinilactibacillus and Pseudomonas, plus Acetobacterium and Bacteroidetes in Indian samples, largely independent of media and pressures. Related 16S rRNA gene sequences for all of these Bacteria have been detected in deep, subsurface environments, although isolated strains were piezotolerant, being able to grow at atmospheric pressure. Only the Clostridium and Acetobacterium were obligate anaerobes. No Archaea were enriched. It may be that these sediment samples were not deep enough (total depth 1126–1527 m) to obtain obligate piezophiles. PMID:19694787

Probing Metabolic Activity of Deep Subseafloor Life with NanoSIMS

NASA Astrophysics Data System (ADS)

Morono, Y.; Terada, T.; Itoh, M.; Inagaki, F.

2014-12-01

There are very few natural environments where life is absent in the Earth's surface biosphere. However, uninhabitable region is expected to be exist in the deep subsurface biosphere, of which extent and constraining factor(s) have still remained largly unknown. Scientific ocean drilling have revealed that microbial communities in sediments are generally phylogenetically distinct from known spieces isolated from the Earth's surface biosphere, and hence metabolic functions of the deep subseafloor life remain unknown. In addition, activity of subseafloor microbial cells are thought to be extraordinally slow, as indicated by limited supply of neutrient and energy substrates. To understand the limits of the Earth's subseafloor biosphere and metabolic functions of microbial populations, detection and quantification of the deeply buried microbial cells in geological habitats are fundamentary important. Using newly developed cell separation techniques as well as an discriminative cell detection system, the current quantification limit of sedimentary microbial cells approaches to 102 cells/cm3. These techniques allow not only to assess very small microbial population close to the subsurface biotic fringe, but also to separate and sort the target cells using flow cytometric cell sorter. Once the deep subseafloor microbial cells are detached from mineral grains and sorted, it opens new windows to subsequent molecular ecological and element/isotopic analyses. With a combined use of nano-scale secondary ion masspectrometry (NanoSIMS) and stable isotope-probing techniques, it is possible to detect and measure activity of substrate incorporation into biomass, even for extremely slow metabolic processes such as uncharacteriszed deep subseafloor life. For example, it was evidenced by NanoSIMS that at least over 80% of microbial cells at ~200 meters-deep, 460,000-year-old sedimentary habitat are indeed live, which substrate incooporation was found to be low (10-15 gC/cell/day) even

Rates and extent of microbial debromination in the deep subseafloor biosphere

NASA Astrophysics Data System (ADS)

Berg, R. D.; Solomon, E. A.; Morris, R. M.

2013-12-01

Recent genomic and porewater geochemical data suggest that reductive dehalogenation of a wide range of halogenated organic compounds could represent an important energy source for deep subseafloor microbial communities. At continental slope sites worldwide, there is a remarkably linear relationship between porewater profiles of ammonium and bromide, indicating that the factors controlling the distribution and rates of dehalogenation have the potential to influence carbon and nitrogen cycling in the deep subsurface biosphere. Though this metabolic pathway could play an important role in the cycling of otherwise refractory pools of carbon and nitrogen in marine sediments and provide energy to microbial communities in the deep subsurface biosphere, the rates and extent of dehalogenation in marine sediments are poorly constrained. Here we report net reaction rate profiles of debromination activity in continental slope sediments, calculated from numerical modeling of porewater bromide profiles from several margins worldwide. The reaction rate profiles indicate three common zones of debromination activity in slope sediments: 1) low rates of debromination, and a potential bromine sink, in the upper sediment column correlating to the sulfate reduction zone, with net bromide removal rates from -3.6 x 10^-2 to -4.85 x 10^-1 μmol m^-2 yr^-1, 2) high rates of debromination from the sulfate-methane transition zone to ~40-100 mbsf, with net bromide release rates between 7.1 x 10^-2 to 3.9 x 10^-1 μmol m^-2 yr^-1, and 3) an inflection point at ~40-100 mbsf, below which net rates of debromination decrease by an order of magnitude and at several sites are indistinguishable from zero. These results indicate that dehalogenating activity is widely distributed in marine sediments, providing energy to fuel deep subseafloor microbial communities, with potentially important consequences for the global bromine and nitrogen cycles.

Lead distribution in coastal and estuarine sediments around India.

PubMed

Chakraborty, Sucharita; Chakraborty, Parthasarathi; Nath, B Nagender

2015-08-15

This study describes the geochemical distribution of lead (Pb) and identifies the critical factors that significantly control Pb distribution and speciation in coastal and estuarine sediments around India by using published data from the literature. Crustal sources influence the abundance of Pb in coastal sediment from the south-east and central-west coast of India. Parts of north-east, north-west, and south-west coast of India were polluted by Pb. Distribution of Pb in sediments, from the north-east and north-west coasts of India, were controlled by Fe-Mn oxyhydroxide mineral phases of the sediments. However, organic carbon (OC) seemed to be a dominant factor in controlling the distribution of Pb in sediments from the central-east and south-west coasts of India. The outcome of this study may help in decision-making to predict the levels of Pb from natural and anthropogenic sources and to control Pb pollution in coastal and estuarine sediments around India. Copyright © 2015 Elsevier Ltd. All rights reserved.

Dispersal of fine sediment in nearshore coastal waters

USGS Publications Warehouse

Warrick, Jonathan A.

2013-01-01

Fine sediment (silt and clay) plays an important role in the physical, ecological, and environmental conditions of coastal systems, yet little is known about the dispersal and fate of fine sediment across coastal margin settings outside of river mouths. Here I provide simple physical scaling and detailed monitoring of a beach nourishment project near Imperial Beach, California, with a high portion of fines (40% silt and clay by weight). These results provide insights into the pathways and residence times of fine sediment transport across a wave-dominated coastal margin. Monitoring of the project used physical, optical, acoustic, and remote sensing techniques to track the fine portion of the nourishment sediment. The initial transport of fine sediment from the beach was influenced strongly by longshore currents of the surf zone that were established in response to the approach angles of the waves. The mean residence time of fine sediment in the surf zone—once it was suspended—was approximately 1 hour, and rapid decreases in surf zone fine sediment concentrations along the beach resulted from mixing and offshore transport in turbid rip heads. For example, during a day with oblique wave directions and surf zone longshore currents of approximately 25 cm/s, the offshore losses of fine sediment in rips resulted in a 95% reduction in alongshore surf zone fine sediment flux within 1 km of the nourishment site. However, because of the direct placement of nourishment sediment on the beach, fine suspended-sediment concentrations in the swash zone remained elevated for several days after nourishment, while fine sediment was winnowed from the beach. Once offshore of the surf zone, fine sediment settled downward in the water column and was observed to transport along and across the inner shelf. Vertically sheared currents influenced the directions and rates of fine sediment transport on the shelf. Sedimentation of fine sediment was greatest on the seafloor directly offshore

Sedimentological imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments

NASA Astrophysics Data System (ADS)

Ciobanu, M.-C.; Rabineau, M.; Droz, L.; Révillon, S.; Ghiglione, J.-F.; Dennielou, B.; Jorry, S.-J.; Kallmeyer, J.; Etoubleau, J.; Pignet, P.; Crassous, P.; Vandenabeele-Trambouze, O.; Laugier, J.; Guégan, M.; Godfroy, A.; Alain, K.

2012-09-01

An interdisciplinary study was conducted to evaluate the relationship between geological and paleoenvironmental parameters and the bacterial and archaeal community structure of two contrasting subseafloor sites in the Western Mediterranean Sea (Ligurian Sea and Gulf of Lion). Both depositional environments in this area are well-documented from paleoclimatic and paleooceanographic point of views. Available data sets allowed us to calibrate the investigated cores with reference and dated cores previously collected in the same area, and notably correlated to Quaternary climate variations. DNA-based fingerprints showed that the archaeal diversity was composed by one group, Miscellaneous Crenarchaeotic Group (MCG), within the Gulf of Lion sediments and of nine different lineages (dominated by MCG, South African Gold Mine Euryarchaeotal Group (SAGMEG) and Halobacteria) within the Ligurian Sea sediments. Bacterial molecular diversity at both sites revealed mostly the presence of the classes Alphaproteobacteria, Betaproteobacteria and Gammaproteobacteria within Proteobacteria phylum, and also members of Bacteroidetes phylum. The second most abundant lineages were Actinobacteria and Firmicutes at the Gulf of Lion site and Chloroflexi at the Ligurian Sea site. Various substrates and cultivation conditions allowed us to isolate 75 strains belonging to four lineages: Alpha-, Gammaproteobacteria, Firmicutes and Actinobacteria. In molecular surveys, the Betaproteobacteria group was consistently detected in the Ligurian Sea sediments, characterized by a heterolithic facies with numerous turbidites from a deep-sea levee. Analysis of relative betaproteobacterial abundances and turbidite frequency suggested that the microbial diversity was a result of main climatic changes occurring during the last 20 ka. Statistical direct multivariate canonical correspondence analyses (CCA) showed that the availability of electron acceptors and the quality of electron donors (indicated by age

Recent Advances in Studies of Coastal Marsh Sedimentation

NASA Astrophysics Data System (ADS)

Pasternack, G. B.; Leonard, L. A.

2001-05-01

Limited understanding of sedimentation processes in coastal marshes is a key constraint on the management of environmental impacts associated with sea level rise, degrading quality and quantity of aquatic habitats, and downstream impacts of watershed land use. The problem is exacerbated by complex interactions among physical, ecological, and chemical variables that impact sedimentation over a large range of spatio-temporal scales. These challenges are being met by increasingly sophisticated approaches which cross-fertilize from other disciplines or go even further to integrate multidisciplinary perspectives. One example of the former has been improved precision of fine scale measurements of fluid mechanics and sediment transport over marsh plains and application of those measurements in geomorphologic and coastal engineering models. This advancement has improved our understanding of marsh dynamics at a mechanistic level, which is key for improving the predictive capabilities of wetland models. An example of a multidisciplinary approach that has become very common is the combined usage of multiple monitoring, isotopic, and palynological methods for estimating sedimentation and erosion at a site over a range of time scales. By applying such combinations, it has been possible to piece apart the relative roles of natural processes such as sea level rise and storms from human impacts such as flow constrictions, channel dredging, and sediment supply changes. Beyond improving approaches used to study marshes, past work has led to new questions about marsh morphodynamics and how coastal marshes interact with upland watersheds. With the aid of chaos theory, some recent studies have asserted that coastal marsh channels are fractal and thus must follow universal laws in common with watershed drainages and other dendritic systems. Also, where marshes exist among a mosaic of habitats on a delta, research has revealed the relative roles of watershed versus coastal processes in

Rapid Sediment Accumulation Results in High Methane Effluxes from Coastal Sediments

PubMed Central

Lenstra, Wytze; Jong, Dirk; Meysman, Filip J. R.; Sapart, Célia J.; van der Veen, Carina; Röckmann, Thomas; Gonzalez, Santiago; Slomp, Caroline P.

2016-01-01

Globally, the methane (CH4) efflux from the ocean to the atmosphere is small, despite high rates of CH4 production in continental shelf and slope environments. This low efflux results from the biological removal of CH4 through anaerobic oxidation with sulfate in marine sediments. In some settings, however, pore water CH4 is found throughout the sulfate-bearing zone, indicating an apparently inefficient oxidation barrier for CH4. Here we demonstrate that rapid sediment accumulation can explain this limited capacity for CH4 removal in coastal sediments. In a saline coastal reservoir (Lake Grevelingen, The Netherlands), we observed high diffusive CH4 effluxes from the sediment into the overlying water column (0.2–0.8 mol m-2 yr-1) during multiple years. Linear pore water CH4 profiles and the absence of an isotopic enrichment commonly associated with CH4 oxidation in a zone with high rates of sulfate reduction (50–170 nmol cm-3 d-1) both suggest that CH4 is bypassing the zone of sulfate reduction. We propose that the rapid sediment accumulation at this site (~ 13 cm yr-1) reduces the residence time of the CH4 oxidizing microorganisms in the sulfate/methane transition zone (< 5 years), thus making it difficult for these slow growing methanotrophic communities to build-up sufficient biomass to efficiently remove pore water CH4. In addition, our results indicate that the high input of organic matter (~ 91 mol C m-2 yr-1) allows for the co-occurrence of different dissimilatory respiration processes, such as (acetotrophic) methanogenesis and sulfate reduction in the surface sediments by providing abundant substrate. We conclude that anthropogenic eutrophication and rapid sediment accumulation likely increase the release of CH4 from coastal sediments. PMID:27560511

Soil characteristics of sediment-amended baldcypress (Taxodium distichum) swamps of coastal Louisiana

USGS Publications Warehouse

Jiang, Ming; Middleton, Beth A.

2011-01-01

Amendments of sediment from dredging activities have played an important role in raising the elevation of sinking coastal wetlands. This study compared the soil characteristics of sediment- amended coastal swamps in the Barataria Preserve unit of Jean Lafitte National Historical Park and Preserve with natural swamps along Bayou des Familles. The sandy sediment amendments used in the coastal forests had different soil texture and characteristics than the more organic soils of the natural swamps. Three years after the application of these sediments on the sediment-amended swamps, dewatering and compaction of the sediment had occurred but the sediment still had high salinity and bulk density, and low organic matter content. The two sediment-amended swamps differed from each other in that Site 1 had a higher elevation (mean = 25 cm higher) and drier soil than Site 2. The effects of sediment in coastal forested wetlands require separate consideration from studies of salt marshes, e.g., the weight of the sediment might damage tree roots, or the amendments might influence soil stability during storms in a different way. Generally, this study suggests that shallower depths of sediment are more likely to yield environments beneficial to these sinking baldcypress swamps in coastal Louisiana.

Microbial community stratification controlled by the subseafloor fluid flow and geothermal gradient at the Iheya North hydrothermal field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331).

PubMed

Yanagawa, Katsunori; Breuker, Anja; Schippers, Axel; Nishizawa, Manabu; Ijiri, Akira; Hirai, Miho; Takaki, Yoshihiro; Sunamura, Michinari; Urabe, Tetsuro; Nunoura, Takuro; Takai, Ken

2014-10-01

The impacts of lithologic structure and geothermal gradient on subseafloor microbial communities were investigated at a marginal site of the Iheya North hydrothermal field in the Mid-Okinawa Trough. Subsurface marine sediments composed of hemipelagic muds and volcaniclastic deposits were recovered through a depth of 151 m below the seafloor at site C0017 during Integrated Ocean Drilling Program Expedition 331. Microbial communities inferred from 16S rRNA gene clone sequencing in low-temperature hemipelagic sediments were mainly composed of members of the Chloroflexi and deep-sea archaeal group. In contrast, 16S rRNA gene sequences of marine group I Thaumarchaeota dominated the microbial phylotype communities in the coarse-grained pumiceous gravels interbedded between the hemipelagic sediments. Based on the physical properties of sediments such as temperature and permeability, the porewater chemistry, and the microbial phylotype compositions, the shift in the physical properties of the sediments is suggested to induce a potential subseafloor recharging flow of oxygenated seawater in the permeable zone, leading to the generation of variable chemical environments and microbial communities in the subseafloor habitats. In addition, the deepest section of sediments under high-temperature conditions (∼90°C) harbored the sequences of an uncultivated archaeal lineage of hot water crenarchaeotic group IV that may be associated with the high-temperature hydrothermal fluid flow. These results indicate that the subseafloor microbial community compositions and functions at the marginal site of the hydrothermal field are highly affected by the complex fluid flow structure, such as recharging seawater and underlying hydrothermal fluids, coupled with the lithologic transition of sediments. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Microbial Community Stratification Controlled by the Subseafloor Fluid Flow and Geothermal Gradient at the Iheya North Hydrothermal Field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331)

PubMed Central

Breuker, Anja; Schippers, Axel; Nishizawa, Manabu; Ijiri, Akira; Hirai, Miho; Takaki, Yoshihiro; Sunamura, Michinari; Urabe, Tetsuro; Nunoura, Takuro; Takai, Ken

2014-01-01

The impacts of lithologic structure and geothermal gradient on subseafloor microbial communities were investigated at a marginal site of the Iheya North hydrothermal field in the Mid-Okinawa Trough. Subsurface marine sediments composed of hemipelagic muds and volcaniclastic deposits were recovered through a depth of 151 m below the seafloor at site C0017 during Integrated Ocean Drilling Program Expedition 331. Microbial communities inferred from 16S rRNA gene clone sequencing in low-temperature hemipelagic sediments were mainly composed of members of the Chloroflexi and deep-sea archaeal group. In contrast, 16S rRNA gene sequences of marine group I Thaumarchaeota dominated the microbial phylotype communities in the coarse-grained pumiceous gravels interbedded between the hemipelagic sediments. Based on the physical properties of sediments such as temperature and permeability, the porewater chemistry, and the microbial phylotype compositions, the shift in the physical properties of the sediments is suggested to induce a potential subseafloor recharging flow of oxygenated seawater in the permeable zone, leading to the generation of variable chemical environments and microbial communities in the subseafloor habitats. In addition, the deepest section of sediments under high-temperature conditions (∼90°C) harbored the sequences of an uncultivated archaeal lineage of hot water crenarchaeotic group IV that may be associated with the high-temperature hydrothermal fluid flow. These results indicate that the subseafloor microbial community compositions and functions at the marginal site of the hydrothermal field are highly affected by the complex fluid flow structure, such as recharging seawater and underlying hydrothermal fluids, coupled with the lithologic transition of sediments. PMID:25063666

Transcriptional analysis of sulfate reducing and chemolithoautotrophic sulfur oxidizing bacteria in the deep subseafloor.

PubMed

Orsi, William D; Barker Jørgensen, Bo; Biddle, Jennifer F

2016-08-01

Sulfate reducing bacteria (SRB) oxidize a significant proportion of subseafloor organic carbon, but their metabolic activities and subsistence mechanisms are poorly understood. Here, we report in depth phylogenetic and metabolic analyses of SRB transcripts in the Peru Margin subseafloor and interpret these results in the context of sulfate reduction activity in the sediment. Relative abundance of overall SRB gene transcripts declines strongly whereas relative abundance of ribosomal protein transcripts from sulfate reducing δ-Proteobacteria peak at 90 m below seafloor (mbsf) within a deep sulfate methane transition zone. This coincides with isotopically heavy δ(34) S values of pore water sulfate (70‰), indicating active subseafloor microbial sulfate reduction. Within the shallow sulfate reduction zone (0-5 mbsf), a transcript encoding the beta subunit of dissimilatory sulfite reductase (dsrB) was related to Desulfitobacterium dehalogenans and environmental sequences from Aarhus Bay (Denmark). At 159 mbsf we discovered a transcript encoding the reversely operating dissimilatory sulfite reductase α-subunit (rdsrA), with basal phylogenetic relation to the chemolithoautotrophic SUP05 Group II clade. A diversity of SRB transcripts involved in cellular maintenance point toward potential subsistence mechanisms under low-energy over long time periods, and provide a detailed new picture of SRB activities underlying sulfur cycling in the deep subseafloor. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

Complete genome sequence of the xylan-degrading subseafloor bacterium Microcella alkaliphila JAM-AC0309.

PubMed

Kurata, Atsushi; Hirose, Yuu; Misawa, Naomi; Wakazuki, Sachiko; Kishimoto, Noriaki; Kobayashi, Tohru

2016-03-10

Here we report the complete genome sequence of Microcella alkaliphila JAM-AC0309, which was newly isolated from the deep subseafloor core sediment from offshore of the Shimokita Peninsula of Japan. An array of genes related to utilization of xylan in this bacterium was identified by whole genome analysis. Copyright © 2016 Elsevier B.V. All rights reserved.

Sub-Seafloor Carbon Dioxide Storage Potential on the Juan de Fuca Plate, Western North America

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jerry Fairley; Robert Podgorney

2012-11-01

The Juan de Fuca plate, off the western coast of North America, has been suggested as a site for geological sequestration of waste carbon dioxide because of its many attractive characteristics (high permeability, large storage capacity, reactive rock types). Here we model CO2 injection into fractured basalts comprising the upper several hundred meters of the sub-seafloor basalt reservoir, overlain with low-permeability sediments and a large saline water column, to examine the feasibility of this reservoir for CO2 storage. Our simulations indicate that the sub-seafloor basalts of the Juan de Fuca plate may be an excellent CO2 storage candidate, as multiplemore » trapping mechanisms (hydrodynamic, density inversions, and mineralization) act to keep the CO2 isolated from terrestrial environments. Questions remain about the lateral extent and connectivity of the high permeability basalts; however, the lack of wells or boreholes and thick sediment cover maximize storage potential while minimizing potential leakage pathways. Although promising, more study is needed to determine the economic viability of this option.« less

Global rates of marine sulfate reduction and implications for sub-sea-floor metabolic activities

NASA Astrophysics Data System (ADS)

Bowles, Marshall W.; Mogollón, José M.; Kasten, Sabine; Zabel, Matthias; Hinrichs, Kai-Uwe

2014-05-01

Sulfate reduction is a globally important redox process in marine sediments, yet global rates are poorly quantified. We developed an artificial neural network trained with 199 sulfate profiles, constrained with geomorphological and geochemical maps to estimate global sulfate-reduction rate distributions. Globally, 11.3 teramoles of sulfate are reduced yearly (~15% of previous estimates), accounting for the oxidation of 12 to 29% of the organic carbon flux to the sea floor. Combined with global cell distributions in marine sediments, these results indicate a strong contrast in sub-sea-floor prokaryote habitats: In continental margins, global cell numbers in sulfate-depleted sediment exceed those in the overlying sulfate-bearing sediment by one order of magnitude, whereas in the abyss, most life occurs in oxic and/or sulfate-reducing sediments.

Mercury speciation in coastal sediments from the central east coast of India by modified BCR method.

PubMed

Chakraborty, Parthasarathi; Raghunadh Babu, P V; Vudamala, Krushna; Ramteke, Darwin; Chennuri, Kartheek

2014-04-15

This is the first study to describe distribution and speciation of Hg in coastal sediments from the central east coast of India. The concentrations of Hg in the studied sediments were found to be much lower than the Hg concentration recommended in coastal sediments by the United State Environmental Protection Agency and the Canadian Council of Ministers of the Environment for the protection of aquatic life. This study suggests that the interactions between Hg and coastal sediments are influenced by particle size (sand, silt and clay) of the sediments and the total organic carbon (TOC) content in the sediments. It was found that the coastal sediments from the central east coast of India could act as a sink for Hg. The availability of strong uncomplexed-Hg binding sites in the coastal sediments was observed. Copyright © 2014 Elsevier Ltd. All rights reserved.

Diploptene: an indicator of terrigenous organic carbon in Washington coastal sediments

NASA Technical Reports Server (NTRS)

Prahl, F. G.; Hayes, J. M.

1992-01-01

The pentacyclic triterpene 17 beta(H),21 beta(H)-hop-22(29)-ene (diploptene) occurs in sediments throughout the Columbia River drainage basin and off the southern coast of Washington state in concentrations comparable to long-chain plantwax n-alkanes. The same relationship is evident for diploptene and long-chain n-alkanes in soils from the Willamette Valley. Microorganisms indigenous to soils and soil erosion are indicated as the biological source and physical process, respectively, for diploptene in coastal sediments. Similarity between the stable carbon isotopic composition (delta 13CPDB) of diploptene isolated from soil in the Willamette Valley (-31.2 +/- 0.3%) and from sediments deposited throughout the Washington coastal environment (-31.2 +/- 0.5%) supports this argument. Values of delta for diploptene in river sediments are variable and 8-17% lighter, indicating that an additional biological source such as methane-oxidizing bacteria makes a significant contribution to the diploptene record in river sediments. Selective biodegradation resulting from a difference in the physicochemical association within eroded particles can explain the absence of the more-13C-depleted form of diploptene in Washington coastal sediments, but this mechanism remains unproven.

Modeling sediment transport in Qatar: Application for coastal development planning.

PubMed

Yousif, Ruqaiya; Warren, Christopher; Ben-Hamadou, Radhouan; Husrevoglu, Sinan

2018-03-01

Hydrodynamics and sediment transport are key physical processes contributing to habitat structure within the marine environment. Coastal development that results in the alteration of these processes (e.g., changing water flushing and/or sedimentation rates) can have detrimental impacts on sensitive systems. This is a current, relevant issue in Qatar as its coastal regions continue to be developed, not only around the capital of Doha, but in many areas around this Arabian Gulf peninsula. The northeastern Qatari coast is comprised of diverse and sensitive flora and fauna such as seagrass and macroalgae meadows, coral reefs and patches, turtles, and dugongs that tolerate harsh environmental conditions. In the near future, this area may see a rise in anthropogenic activity in the form of coastal development projects. These projects will add to existing natural stresses, such as high temperature, high salinity, and low rates of precipitation. Consequently, there is a need to characterize this area and assess the potential impacts that these anthropogenic activities may have on the region. In the present study, a novel sediment transport model is described and used to demonstrate the potential impact of altering hydrodynamics and subsequent sediment transport along the northeastern Qatar nearshore marine environment. The developed models will be tested using potential scenarios of future anthropogenic activities forecasted to take place in the area. The results will show the effects on water and sediment behavior and provide a scientific approach for key stakeholders to make decisions with respect to the management of the considered coastal zone. Furthermore, it provides a tool and framework that can be utilized in environmental impact assessment and associated hydrodynamic studies along other areas of the Qatari coastal zone. Integr Environ Assess Manag 2018;14:240-251. © 2017 SETAC. © 2017 SETAC.

Coastal sea-ice processes in Alaska and their relevance for sediment dynamics and coastal retreat (Invited)

NASA Astrophysics Data System (ADS)

Eicken, H.; Kapsch, M.; Johnson, M. A.; Weyapuk, W. U., Jr.

2009-12-01

Sea ice plays an important, complicated role in Arctic coastal sediment dynamics. It helps protect the shoreline from wave action and constrains coastal permafrost thaw; at the same time, sea ice is a highly effective sediment erosion and transport agent. For the coastline of (sub-)Arctic Alaska we have examined key processes that govern the role of sea ice as a geologic agent. Based on passive microwave satellite data for the time period 1979 to 2008 and augmented by field measurements and observations conducted by local sea-ice experts in coastal communities from 2006 onwards, we determined the onset of coastal ice spring break-up and fall freeze-up. These two events define the start and end of the open-water season during which the coast is rendered most vulnerable to thermal and dynamic processes promoting erosion. Satellite data show significant trends toward later fall freeze-up in many locations and moreover provide a picture of the statistical significance and variability of such trends in great spatio-temporal detail. Coastal ice observations suggest that important sea-ice processes (such as formation of ice berms) that precede freeze-up as detected by passive microwave data need to be taken into consideration in evaluating the vulnerability of the coastline and the specific threat of individual storms. Field observations, satellite data and local knowledge also highlight the substantial change in winter sea-ice regimes over the past two decades, with a much more mobile ice cover enhancing winter sediment transport. Ultimately, the shorter sea-ice season and the greater mobility and the lack of stability of winter coastal sea ice work in concert to increase the vulnerability of the coastline to erosion and flooding. At the same time, these changes provide a mechanism for effective redistribution and cross-shelf transport of sediments that prepares the stage for further erosive action in subsequent seasons.

Sediment quality in the north coastal basin of Massachusetts, 2003

USGS Publications Warehouse

Breault, Robert F.; Ashman, Mary S.; Heath, Douglas

2004-01-01

The U.S. Geological Survey, in cooperation with the Massachusetts Department of Environmental Protection, completed a reconnaissance-level study of bottom-sediment quality in selected lakes, rivers, and estuaries in the North Coastal Basin of Massachusetts. Bottom-sediment grab samples were collected from 20 sites in the North River, Lake Quannapowitt, Saugus River, Mill River, Shute Brook, Sea Plane Basin, Pines River, and Bear Creek. The samples were tested for various types of potentially harmful contaminants? including 33 elements, 17 polyaromatic hydrocarbons (PAHs), 22 organochlorine pesticides, and 7 polychlorinated biphenyl (PCB) mixtures (Aroclors)?to benthic organisms (bottom-dwelling) and humans. The results were compared among sampling sites, to background concentrations, and to concen-trations measured in other urban rivers, and sediment-quality guidelines were used to predict toxicity at the sampling sites to benthic organisms and humans. Because there are no standards for human toxicity for aquatic sediment, standards for contaminated upland soil were used. Contaminant concentrations measured in sediment collected from the North Coastal Basin generally were equal to or greater than concentrations in sediment from uncontaminated rivers throughout New England. Contaminants in North Coastal Basin sediment with elevated concentrations (above back-ground levels) included arsenic, chromium, copper, lead, nickel, and zinc, some of the PAHs, dichlorodiphenyltrichloro-ethane (DDT) and its metabolites, and dieldrin. No PCBs were measured above the detection limits. Measured concentrations of arsenic, chromium, and lead were also generally greater than those measured in other urban rivers throughout the conter-minous United States. With one exception (arsenic), local con-centrations measured in sediment samples collected from the North Coastal Basin were lower than concentrations measured in sediment collected from two of three urban rivers draining to Boston

Use of sediment amendments to rehabilitate sinking coastal swamp forests in Louisiana

USGS Publications Warehouse

Middleton, Beth A.; Jiang, Ming

2013-01-01

Coastal wetlands are losing elevation worldwide, so that techniques to increase elevation such as sediment amendment might benefit these wetlands. This study examined the potential of sediment amendment to raise elevation and support the production and regeneration of vegetation in coastal forests in Louisiana. Before sediment amendment, the vegetation did not differ in these Taxodium distichum–Nyssa aquatica forests with respect to herbaceous and tree seedling composition, and sapling and tree characteristics. After the application of sediment in January 2007, sediment-amended swamps had higher elevations and salinity levels than natural swamps. The layer of sediment applied to Treasure Island in Jean Lafitte National Historic Park and Preserve was relatively deep (sediment depth at Site One and Site Two: 0.89 and 0.69 m, respectively, six months after application), and may have exceeded an optimal threshold. Sediment-amended swamp with the highest elevation had some tree mortality and little tree growth of T. distichum. Also, sediment-amended swamp had higher root biomasses of ruderal species, and lower species richness and cover of herbaceous species. Nevertheless, during controlled water releases during an oil spill emergency in 2010, both sediment-amended and reference forest had higher production levels than in other years. While sediment amendment is a compelling management alternative for sinking coastal wetlands, optimal thresholds were not determined for these T. distichum–N. aquatica swamps.

Sources, dispersal, and fate of fine sediment supplied to coastal California

USGS Publications Warehouse

Farnsworth, Katherine L.; Warrick, Jonathan A.

2007-01-01

We have investigated the sources, dispersal, and fate of fine sediment supplied to California coastal waters in a partnership between the U.S. Geological Survey (USGS) and the California Sediment Management Workgroup (CSMW). The purpose of this study was to document the rates and characteristics of these processes so that the State can better manage its coastal resources, including sediment. In this study, we made the following observations: - Rivers dominate the supply of fine sediment to the California coastal waters, with an average annual flux of 34 megatonnes (Mt). - Cliff and bluff erosion in central and southern California is a source of fine sediment, with a delivery rate of approximately 10 percent of river loads. In the southern most part of the State, however, where river-sediment loads are low, cliff and bluff erosion represent approximately 40 percent of the total fine-sediment flux. - Temporal variation in the sources of fine sediment is high. River floods and bluff erosion are episodic and dominated by winter storms, which supply most sediment flux to the coast. The magnitude of winter storms is generally related to the El Niño-Southern Oscillation (ENSO) and Pacific Decadal Oscillation (PDO) climate cycles. - The three rivers that dominate fine-sediment flux to the California coast are the Eel, Salinas, and Santa Clara Rivers. Because the sediment delivery from these and all other California coastal watersheds is episodic, individual rivers discharge most of their annual loads over the course of only a few days per year. - Spatial variation in river-sediment discharge is high and generally related to such watershed characteristics as geology, precipitation, and drainage area. For example, the Transverse Range of southern California represents only 9 percent of the watershed-drainage area but 18 percent of the fine-sediment flux, a function of the young sedimentary bedrock and active tectonics of this region. The urban rivers of southern California

Low frequency of endospore-specific genes in subseafloor sedimentary metagenomes.

PubMed

Kawai, Mikihiko; Uchiyama, Ikuo; Takami, Hideto; Inagaki, Fumio

2015-04-01

Spore formation is considered to be one of the microbial strategies for long-term survival in subseafloor sedimentary habitats. However, our knowledge of the genetic and physiological characteristics of subseafloor microbes is limited. Here, we studied the distribution and frequency of genes that are related to endospore formation in 10 subseafloor sedimentary metagenomes from Site C9001 off Japan and Site 1229 off Peru. None or very low frequencies of endospore-specific genes (e.g. dpaA, dpaB, sspA, spo0A, spoIIGA, spoIIM, spoIIIAB, spoIVA, spoIVB, yabP, yunB, spoVM) were observed in the subseafloor metagenomes. Based on the number of universally conserved single copy genes, the frequency ratio of putative endospore-formers was estimated to be < 10%, which is consistent with the frequency of Clostridia-derived genomes (2-4%) but is lower than previous estimates based on the concentration of dipicolinic acid. Conceivable explanations for this discrepancy are as follows: the efficiency of lysis and DNA extraction of subseafloor endospore cells may have been lower than those of vegetative cells, conversion factor of dipicolinic acid content per cell may differ, and/or sporulation-related genes and other functional strategies for long-term survival in the deep subseafloor biosphere are evolutionarily distinct from known spore-forming gene repertoires. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Sediment measurement in estuarine and coastal areas

NASA Technical Reports Server (NTRS)

Shelley, P. E.

1976-01-01

A survey of uses of estuarine and coastal areas is given. Problems associated with these uses are discussed, and data needs for intelligent management of these valuable areas are outlined. Suspended sediment measurements are seen to be one of the greatest needs. To help understand the complexity of the problem, a brief discussion of sediment mechanics is given, including sediment sources, characteristics, and transport. The impact of sediment mechanics on its direct measurement (sampling and analysis) is indicated, along with recommendations for directly obtaining representative data. Indirect measurement of suspended sediment by remote sensors is discussed both theoretically and in the light of some recent experiences. The need for an integrated, multidisciplinary program to solve the problem of quantitatively measuring suspended sediment with remote sensors is stressed, and several important considerations of such a program and benefits to be derived therefrom are briefly addressed.

Contaminated Coastal Sediments in the Northeastern United States: Changing Sources Over Time

NASA Astrophysics Data System (ADS)

Buchholtz ten Brink, M. R.; Bothner, M. H.; Mecray, E. L.

2001-05-01

Regional studies of coastal sediments in the northeastern United States, conducted by the U.S. Geological Survey, show that trace metal contamination from land-based activities has occurred near all major urban centers. Concentrations of metals, such as Cu, Pb, Zn, Hg, and Ag, are 2-5 times background levels in sediments of Boston Harbor, Long Island Sound (LIS), offshore of Gulf of Maine coastal cities, and in the New York Bight (NYB). Contaminant accumulations are strongly influenced by sediment lithology and sediment transport properties in local areas, in addition to proximity to pollutant sources. Inventories are greatest in muddy depo-centers of the NYB, western LIS, and Boston Harbor. Based on sediment cores, the onset of metal contamination in the northeast occurs in the mid-1800s, with inputs increasing in the mid-1900s and decreasing (20-50%) from the 1970s to present. The increases correlate with local population growth and abundance of a bacterial sewage indicator, Clostridium perfringens. Increases of N and Corg in cores also reflect population growth and changing wastewater treatment practices. Corg values reach a high of 6% in buried sediments near the NYB disposal sites. Cores from western LIS have increasing values of C, N, and P in the most recently deposited sediments, in contrast to metal concentrations that have decreased in recent years. Cessation of sludge disposal and reduction of chemical discharges have been effective at reducing inputs; however, contaminated sediment deposits remain in rivers (e.g., the Charles), floodplains (e.g., the Housatonic), and coastal sediments. In the future, high concentrations of metal contaminants stored in buried sediments of marine and fluvial systems are likely to be a lingering and significant source of pollution to coastal environments. Until more effective source-reduction occurs, land-use and industrial practices associated with population growth in the northeast will remain dominant factors for

California nearshore processes - ERTS 1. [coastal currents and sediments

NASA Technical Reports Server (NTRS)

Steller, D. D.; Pirie, D. M.

1974-01-01

The detectability of many nearshore processes from ERTS is made possible due to the suspended sediment present in the coastal waters. From viewing and analyzing the California coastal imagery collected during the last year and a half, the overall current patterns and their changes have become evident. It is now possible to map monthly and seasonal changes that occur throughout the year. The original objectives of detecting currents, sediment transport, estuaries and river discharge have now been expanded to include the use of ERTS information in operational problems of the U.S. Army Corps of Engineers. This incorporates the detected nearshore features into planning and organizing shore protection facilities.

Ecosystem engineering and biodiversity in coastal sediments: posing hypotheses

NASA Astrophysics Data System (ADS)

Bouma, Tjeerd J.; Olenin, Sergej; Reise, Karsten; Ysebaert, Tom

2009-03-01

Coastal sediments in sheltered temperate locations are strongly modified by ecosystem engineering species such as marsh plants, seagrass, and algae as well as by epibenthic and endobenthic invertebrates. These ecosystem engineers are shaping the coastal sea and landscape, control particulate and dissolved material fluxes between the land and sea, and between the benthos and the passing water or air. Above all, habitat engineering exerts facilitating and inhibiting effects on biodiversity. Despite a strongly growing interest in the functional role of ecosystem engineering over the recent years, compared to food web analyses, the conceptual understanding of engineering-mediated species interactions is still in its infancy. In the present paper, we provide a concise overview on current insights and propose two hypotheses on the general mechanisms by which ecosystem engineering may affect biodiversity in coastal sediments. We hypothesise that autogenic and allogenic ecosystem engineers have inverse effects on epibenthic and endobenthic biodiversity in coastal sediments. The primarily autogenic structures of the epibenthos achieve high diversity at the expense of endobenthos, whilst allogenic sediment reworking by infauna may facilitate other infauna and inhibits epibenthos. On a larger scale, these antagonistic processes generate patchiness and habitat diversity. Due to such interaction, anthropogenic influences can strongly modify the engineering community by removing autogenic ecosystem engineers through coastal engineering or bottom trawling. Another source of anthropogenic influences comes from introducing invasive engineers, from which the impact is often hard to predict. We hypothesise that the local biodiversity effects of invasive ecosystem engineers will depend on the engineering strength of the invasive species, with engineering strength defined as the number of habitats it can invade and the extent of modification. At a larger scale of an entire shore

The Successful Deployment of a New Sub-Seafloor Observatory

NASA Astrophysics Data System (ADS)

Lado Insua, T.; Moran, K.; Kulin, I.; Farrington, S.; Newman, J. B.; Riedel, M.; Iturrino, G. J.; Masterson, W. A.; Furman, C. R.; Klaus, A.; Storms, M.; Attryde, J.; Hetmaniak, C.; Huey, D.

2013-12-01

The Simple Cabled Instrument for Measuring Parameters In-Situ (SCIMPI) is a new ocean observatory instrument designed to study dynamic processes in the sub-seafloor. The first SCIMPI prototype comprises nine modules that collect time series measurements of temperature, pressure and electrical resistivity of sediments at pre-selected depths below seafloor. These modules are joined in an array by flexible cables. Floats are attached to the cables of the system to keep the cabling taught against the weight of a sinker bar at the bottom of the string. The system was designed for deployment through drillpipe using D/V JOIDES Resolution. SCIMPI is designed for sediments that will collapse around the observatory after deployment. After five years in development, SCIMPI was successfully deployed within the NEPTUNE Canada observatory in May 2013. The IODP Expedition 341S took place on the Cascadia Margin. The deployment Site U1416 is within an active gas hydrate vent field. Spacing of SCIMPI modules was tailored to measure parameters in the accreted sediment and above and below the Bottom Simulating Reflector (BSR). The location of the modules was dimensioned based on a multivariate analysis of physical properties derived from IODP boreholes located nearby. Members of the SCIMPI team, science party, technical support, crew and participants of the School of Rock assembled the instrument on deck during the days leading up to the deployment. During deployment, SCIMPI was connected to the Multi-Function-Telemetry-Module (from LDEO) and was lowered through drillpipe on the wireline logging cable. SCIMPI communicated data to a shipboard computer until its release, providing assurance that measurements were active on all sensors. The observatory was released with the Electronic Release System (ERS) and the drillpipe was pulled out of the borehole. A camera system was used to check on the installation immediately after deployment. An Ocean Networks Canada expedition revisited the

Sediment yields from small, steep coastal watersheds of California

USGS Publications Warehouse

Warrick, Jonathan A.; Melack, John M.; Goodridge, Blair M.

2015-01-01

Global inventories of sediment discharge to the ocean highlight the importance of small, steep watersheds (i.e., those having drainage areas less than 100,000 km2 and over 1000 m of relief) that collectively provide a dominant flux of sediment. The smallest of these coastal watersheds (e.g., those that have drainage areas less than 1000 km2) can represent a large portion of the drainage areas of active margin coasts, such as California’s coast, but remain almost universally unmonitored. Here we report on the suspended-sediment discharge of several small coastal watersheds (10-56 km2) of the Santa Ynez Mountains, California, that were found to have ephemeral discharge and suspended-sediment concentrations ranging between 1 and over 200,000 mgL-1. Sediment concentrations were weakly correlated with discharge (r2 = 0.10–0.25), and all types of hysteresis patterns were observed during high flows (clockwise, counterclockwise, no hysteresis, and complex). Sediment discharge varied strongly with time and was measurably elevated in one watershed following a wildfire. Although sediment yields varied by over 100-fold across the watersheds (e.g., 15 – 2100 tkm-2 yr -1during the relatively wet 2005 water year), the majority of sediment discharge (65-80%) occurred during only 1% of the time for all watersheds. Furthermore, sampling of dozens of high flow events provides evidence that sediment yields were generally related to peak discharge yields, although these relationships were not consistent across the watersheds. These results suggest that small watersheds of active margins can provide large fluxes of sediment to the coast, but that the rates and timing of this sediment discharge is more irregular in time – and thus more difficult to characterize – than the better monitored and studied watersheds that are 1000-100,000 km2.

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.

PubMed

Dyksma, Stefan; Bischof, Kerstin; Fuchs, Bernhard M; Hoffmann, Katy; Meier, Dimitri; Meyerdierks, Anke; Pjevac, Petra; Probandt, David; Richter, Michael; Stepanauskas, Ramunas; Mußmann, Marc

2016-08-01

Marine sediments are the largest carbon sink on earth. Nearly half of dark carbon fixation in the oceans occurs in coastal sediments, but the microorganisms responsible are largely unknown. By integrating the 16S rRNA approach, single-cell genomics, metagenomics and transcriptomics with (14)C-carbon assimilation experiments, we show that uncultured Gammaproteobacteria account for 70-86% of dark carbon fixation in coastal sediments. First, we surveyed the bacterial 16S rRNA gene diversity of 13 tidal and sublittoral sediments across Europe and Australia to identify ubiquitous core groups of Gammaproteobacteria mainly affiliating with sulfur-oxidizing bacteria. These also accounted for a substantial fraction of the microbial community in anoxic, 490-cm-deep subsurface sediments. We then quantified dark carbon fixation by scintillography of specific microbial populations extracted and flow-sorted from sediments that were short-term incubated with (14)C-bicarbonate. We identified three distinct gammaproteobacterial clades covering diversity ranges on family to order level (the Acidiferrobacter, JTB255 and SSr clades) that made up >50% of dark carbon fixation in a tidal sediment. Consistent with these activity measurements, environmental transcripts of sulfur oxidation and carbon fixation genes mainly affiliated with those of sulfur-oxidizing Gammaproteobacteria. The co-localization of key genes of sulfur and hydrogen oxidation pathways and their expression in genomes of uncultured Gammaproteobacteria illustrates an unknown metabolic plasticity for sulfur oxidizers in marine sediments. Given their global distribution and high abundance, we propose that a stable assemblage of metabolically flexible Gammaproteobacteria drives important parts of marine carbon and sulfur cycles.

Sediment type and benthic fauna control the nutrient release in a coastal bay

NASA Astrophysics Data System (ADS)

Voss, Maren; Thoms, Franziska; Dippner, Joachim; Bartl, Ines; Janas, Urzula; Hellemann, Dana; Hietanen, Susanna; Kendzierska, Halina

2017-04-01

Eutrophication of coastal seas is still a major problem that may even increase in the near future according to recent model studies. The catchment of the Baltic Sea with nine highly industrialized riparian countries is intensively used and only few major rivers are responsible for more than half of the riverine nutrient input to the coastal zones. It is hypothesized that these nutrient are the main drivers for large anoxic bottom waters in the central Baltic Sea and an increasing hypoxia problem in coastal waters. The sequestration of nutrients was therefore intensively studied in the Baltic Sea, however either in the water column or in the sediments. The role of the benthic pelagic coupling for the nutrient turnover was much less investigated especially due to technical challenges. We therefore used a lander system to quantify the nutrient release from sediments in a river impacted coastal Bay of Gdansk in the framework of the BONUS-COCOA project. Lander deployments and sediment coring were done simultaneously to measure nutrient fluxes over time and to characterize grain size, permeability, organic matter content, and benthic fauna. The benthic communities were analyzed to identify potential linkages between nutrient release and the species composition. Our study revealed close linkages between types/grain-size of sediment and the nutrient release. The activity of the animals in the sediment seems responsible for significant release of nutrients which is more pronounced than the diffusive nutrient release back to the water column. Rates from nineteen stations were used to draw a conclusive picture of the overall nutrient release from sediments and were set into a framework of a nutrient budget for the Bay of Gdansk considering the role of fauna. Moreover, we are able to identify a depth of roughly 50m as a border that separates the dominance of benthic recycling from deeper stations where mainly deposition or organic material takes place. Changes in properties of

Perfluoroalkyl and polyfluoroalkyl substances in sediments from South Bohai coastal watersheds, China.

PubMed

Zhu, Zhaoyun; Wang, Tieyu; Wang, Pei; Lu, Yonglong; Giesy, John P

2014-08-30

This study investigated the concentrations and distribution of Perfluoroalkyl and polyfluoroalkyl substances (PFAS) in sediments of 12 rivers from South Bohai coastal watersheds. The highest concentrations of ΣPFAS (31.920 ng g(-1) dw) and PFOA (29.021 ng g(-1) dw) were found in sediments from the Xiaoqing River, which was indicative of local point sources in this region. As for other rivers, concentrations of ΣPFAS ranged from 0.218 to 1.583 ng g(-1) dw were found in the coastal sediments and from 0.167 to 1.953 ng g(-1) dw in the riverine sediments. Predominant PFAS from coastal and riverine areas were PFOA and PFBS, with percentages of 30% and 35%, respectively. Partitioning analysis showed the concentrations of PFNA, PFDA and PFHxS were significantly correlated with organic carbon. The results of a preliminary environmental hazard assessment showed that PFOS posed the highest hazard in the Mi River, while PFOA posed a relative higher hazard in the Xiaoqing River. Copyright © 2013 Elsevier Ltd. All rights reserved.

Iron-mediated anaerobic oxidation of methane in brackish coastal sediments.

PubMed

Egger, Matthias; Rasigraf, Olivia; Sapart, Célia J; Jilbert, Tom; Jetten, Mike S M; Röckmann, Thomas; van der Veen, Carina; Bândă, Narcisa; Kartal, Boran; Ettwig, Katharina F; Slomp, Caroline P

2015-01-06

Methane is a powerful greenhouse gas and its biological conversion in marine sediments, largely controlled by anaerobic oxidation of methane (AOM), is a crucial part of the global carbon cycle. However, little is known about the role of iron oxides as an oxidant for AOM. Here we provide the first field evidence for iron-dependent AOM in brackish coastal surface sediments and show that methane produced in Bothnian Sea sediments is oxidized in distinct zones of iron- and sulfate-dependent AOM. At our study site, anthropogenic eutrophication over recent decades has led to an upward migration of the sulfate/methane transition zone in the sediment. Abundant iron oxides and high dissolved ferrous iron indicate iron reduction in the methanogenic sediments below the newly established sulfate/methane transition. Laboratory incubation studies of these sediments strongly suggest that the in situ microbial community is capable of linking methane oxidation to iron oxide reduction. Eutrophication of coastal environments may therefore create geochemical conditions favorable for iron-mediated AOM and thus increase the relevance of iron-dependent methane oxidation in the future. Besides its role in mitigating methane emissions, iron-dependent AOM strongly impacts sedimentary iron cycling and related biogeochemical processes through the reduction of large quantities of iron oxides.

Geo-hazard by sediment mass movements in submarine canyons

NASA Astrophysics Data System (ADS)

Ghaith, Afif; Fakhri, Milad; Ivaldi, Roberta; Ciavola, Paolo

2017-04-01

Submarine mass movements and their consequences are of major concern for coastal communities and infrastructures but also for the exploitation and the development of seafloor resources. Elevated awareness of the need for better understanding of the underwater mass movement is coupled with great advances in underwater mapping technologies over the past two decades. The seafloor in the Nahr Ibrahim and Saida regions (Lebanon) is characterized by deep canyons, reaching one thousand meters depths in proximity of the coast. Signs of submarine mass movement instability related to these canyons create a connection between shallow and deep water. The presence of these canyons in a tectonically active area generates a particular drained mechanism to the sediment in form of mass movement and slumping. Identification of potential areas where slope movements could be triggered requires data with high spatial resolution. Since this area is poorly explored, in the framework of an international project between Lebanese Navy, Lebanese National Center for Marine Sciences, University of Ferrara and Italian Hydrographic Institute, we analyse the morpho-bathymetric and sedimentological characters of the coastal and shelf sectors. Multibeam echosounder and sub-bottom profiler acoustic systems calibrated with ground truths (sediment grab and core samples) allow us to characterize the nature of seafloor and sub-seafloor with particular detail to the geotechnical properties of sediments and high resolution seismic stratigraphy of the shallow layers. The detection of particular undersea features provides detail maps which are in support to littoral morpho-dynamics, coastal transport and sediment budget. Multilayer hydro-oceanographic map, referring to the seafloor dynamics in connection with deep water environment and drainage system, in accordance to the International Hydrographic Standards and nautical supports, are produced. This high resolution multibeam bathymetry dataset, integrated

Geologic framework, evolution, and sediment resources for restoration of the Louisiana Coastal Zone

USGS Publications Warehouse

Kulp, Mark; Penland, Shea; Williams, S. Jeffress; Jenkins, Chris; Flocks, Jim; Kindinger, Jack

2005-01-01

The Louisiana Coastal Zone along the north-central Gulf of Mexico represents one of America's most important coastal ecosystems in terms of natural resources, human infrastructure, and cultural heritage. This zone also has the highest rates of coastal erosion and wetland loss in the nation because of a complex combination of natural processes and anthropogenic activities during the past century. In response to the dramatic land loss, regional-scale restoration plans are being developed through a partnership of federal and state agencies. One objective is to maintain the barrier island and tidal inlet systems, thereby reducing the impact of storm surge and interior wetland loss. Proposed shore line restoration work relies primarily upon the use of large volumes of sand-rich sediment for shoreline stabilization and the implementation of the shoreline projects. Although sand-rich sediment is required for the Louisiana restoration projects, it is of limited availability within the generally clay to silt-rich, shallow strata of the Louisiana Coastal Zone. Locating volumetrically significant quantities of sand-rich sediment presents a challenge and requires detailed field investigations using direct sampling and geophysical sensing methods. Consequently, there is a fundamental need to thoroughly understand and map the distribution and textural character {e.g., sandiness) of sediment resources within the Coastal Zone for the most cost-effective design and completion of restoration projects.

Analysis of DGGE profiles to explore the relationship between prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin.

PubMed

Fry, John C; Webster, Gordon; Cragg, Barry A; Weightman, Andrew J; Parkes, R John

2006-10-01

The aim of this work was to relate depth profiles of prokaryotic community composition with geochemical processes in the deep subseafloor biosphere at two shallow-water sites on the Peru Margin in the Pacific Ocean (ODP Leg 201, sites 1228 and 1229). Principal component analysis of denaturing gradient gel electrophoresis banding patterns of deep-sediment Bacteria, Archaea, Euryarchaeota and the novel candidate division JS1, followed by multiple regression, showed strong relationships with prokaryotic activity and geochemistry (R(2)=55-100%). Further correlation analysis, at one site, between the principal components from the community composition profiles for Bacteria and 12 other variables quantitatively confirmed their relationship with activity and geochemistry, which had previously only been implied. Comparison with previously published cell counts enumerated by fluorescent in situ hybridization with rRNA-targeted probes confirmed that these denaturing gradient gel electrophoresis profiles described an active prokaryotic community.

Ubiquity of microplastics in coastal seafloor sediments.

PubMed

Ling, S D; Sinclair, M; Levi, C J; Reeves, S E; Edgar, G J

2017-08-15

Microplastic pollutants occur in marine environments globally, however estimates of seafloor concentrations are rare. Here we apply a novel method to quantify size-graded (0.038-4.0mm diam.) concentrations of plastics in marine sediments from 42 coastal and estuarine sites spanning pollution gradients across south-eastern Australia. Acid digestion/density separation revealed 9552 individual microplastics from 2.84l of sediment across all samples; equating to a regional average of 3.4 microplastics·ml -1 sediment. Microplastics occurred as filaments (84% of total) and particle forms (16% of total). Positive correlations between microplastic filaments and wave exposure, and microplastic particles with finer sediments, indicate hydrological/sediment-matrix properties are important for deposition/retention. Contrary to expectations, positive relationships were not evident between microplastics and other pollutants (heavy metals/sewage), nor were negative relationships with neighbouring reef biota detected. Rather, microplastics were ubiquitous across sampling sites. Positive associations with some faunal-elements (i.e. invertebrate species richness) nevertheless suggest high potential for microplastic ingestion. Copyright © 2017 Elsevier Ltd. All rights reserved.

An in vivo Investigation into Temperature-Controlled Stratification of Sub-Seafloor Populations

NASA Astrophysics Data System (ADS)

McClelland, H. L. O.; Morono, Y.; Fike, D. A.; Bradley, A. S.

2017-12-01

The deep subsurface is characterized by a paucity of carbon substrates and biologically exploitable chemical potential energy. These metabolic challenges can be exacerbated by high temperatures, due to increased costs of cellular maintenance. Though sparse, microbial life persists in such environments, however, the degree to which temperature gradients result in the stratification extremophilic sub-seafloor populations is poorly understood. During Expedition 370, we established a matrix of incubation experiments with sediment samples taken from 8 depths corresponding to in situ temperatures of approximately 37, 50, 60, 70, 80, 90, 100 and 110°C, which were incubated in oxygen-free, acetate- and sulfate- supplemented, artificial seawater at temperatures of 37, 50, 60, 70 and 80°C. Substrates include large isotopic labels. Following separation from the sediment, cells were analyzed using SIMS, allowing estimates of biomass synthesis rates. We are interested in discussing potential future experiments and collaborations using this resource.

Subseafloor basalts as fungal habitats

NASA Astrophysics Data System (ADS)

Ivarsson, M.; Bengtson, S.

2013-12-01

The oceanic crust makes up the largest potential habitat for life on Earth, yet next to nothing is known about the abundance, diversity and ecology of its biosphere. Our understanding of the deep biosphere of subseafloor crust is, with a few exceptions, based on a fossil record. Surprisingly, a majority of the fossilized microorganisms have been interpreted or recently re-interpreted as remnants of fungi rather than prokaryotes. Even though this might be due to a bias in fossilization the presence of fungi in these settings can not be neglected. We have examined fossilized microorganisms in drilled basalt samples collected at the Emperor Seamounts in the Pacific Ocean. Synchrotron-radiation X-ray tomography microscopy (SRXTM) studies has revealed a complex morphology and internal structure that corresponds to characteristic fungal morphology. Chitin was detected in the fossilized hyphae, which is another strong argument in favour of a fungal interpretation. Chitin is absent in prokaryotes but a substantial constituent in fungal cell walls. The fungal colonies consist of both hyphae and yeast-like growth states as well as resting structures and possible fruit bodies, thus, the fungi exist in vital colonies in subseafloor basalts. The fungi have also been involved in extensive weathering of secondary mineralisations. In terrestrial environments fungi are known as an important geobiological agent that promotes mineral weathering and decomposition of organic matter, and they occur in vital symbiosis with other microorganisms. It is probable to assume that fungi would play a similar role in subseafloor basalts and have great impact on the ecology and on biogeochemical cycles in such environments.

Salmonella rarely detected in Mississippi coastal waters and sediment.

PubMed

Carr, M R; Wang, S Y; McLean, T I; Flood, C J; Ellender, R D

2010-12-01

Standards for the rapid detection of individual pathogens from environmental samples have not been developed, but in their absence, the use of molecular-based detection methods coupled with traditional microbiology techniques allows for rapid and accurate pathogen detection from environmental waters and sediment. The aim of this research was to combine the use of enrichment with PCR for detection of Salmonella in Mississippi coastal waters and sediment and observe if that presence correlated with levels of enterococci and climatological variables. Salmonella were primarily found in samples that underwent nutrient enrichment and were present more frequently in freshwater than marine waters. Salmonella were detected infrequently in marine and freshwater sediments. There was a significant positive correlation between the presence of detectable Salmonella and the average enterococcal count. An inverse relationship, however, was observed between the frequency of detection and the levels of salinity, turbidity and sunlight exposure. Results from this study indicated the presence of Salmonella in Mississippi coastal waters, and sediments are very low with significant differences between freshwater and marine environments. Using pathogenic and novel nonpathogenic molecular markers, Salmonella do not appear to be a significant pathogenic genus along the Mississippi Coast. © 2010 The Authors. Journal of Applied Microbiology © 2010 The Society for Applied Microbiology.

Characterization and evolution of the sediments of a Mediterranean coastal lagoon located next to a former mining area.

PubMed

García, Gregorio; Muñoz-Vera, Ana

2015-11-15

Coastal lagoons are ecosystems that are relatively enclosed water bodies under the influence of both the terrestrial and the marine environment, being vulnerable to human impacts. Human activities, such as mining extraction, are significant anthropogenic coastal stressors that can negatively affect ecosystems and communities. In light of the above, the objective of this research is to examine the influence of metal mining activities on the composition of sediments of a Mediterranean coastal lagoon, named Mar Menor. This paper presents a comprehensive characterization for grain size, mineralogy, geochemistry and organic matter of sediments of this coastal lagoon, investigating their variation along space and time. Sedimentation dynamics are ruling clearly the grain size predominant in each area of the Mar Menor coastal lagoon, determining the existence of entrainment, transport and sedimentation areas. For minerals, elements and organic matter, sedimentation dynamics are also determining their distribution. Copyright © 2015 Elsevier Ltd. All rights reserved.

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes

PubMed Central

Kawai, Mikihiko; Futagami, Taiki; Toyoda, Atsushi; Takaki, Yoshihiro; Nishi, Shinro; Hori, Sayaka; Arai, Wataru; Tsubouchi, Taishi; Morono, Yuki; Uchiyama, Ikuo; Ito, Takehiko; Fujiyama, Asao; Inagaki, Fumio; Takami, Hideto

2014-01-01

Marine subsurface sediments on the Pacific margin harbor diverse microbial communities even at depths of several hundreds meters below the seafloor (mbsf) or more. Previous PCR-based molecular analysis showed the presence of diverse reductive dehalogenase gene (rdhA) homologs in marine subsurface sediment, suggesting that anaerobic respiration of organohalides is one of the possible energy-yielding pathways in the organic-rich sedimentary habitat. However, primer-independent molecular characterization of rdhA has remained to be demonstrated. Here, we studied the diversity and frequency of rdhA homologs by metagenomic analysis of five different depth horizons (0.8, 5.1, 18.6, 48.5, and 107.0 mbsf) at Site C9001 off the Shimokita Peninsula of Japan. From all metagenomic pools, remarkably diverse rdhA-homologous sequences, some of which are affiliated with novel clusters, were observed with high frequency. As a comparison, we also examined frequency of dissimilatory sulfite reductase genes (dsrAB), key functional genes for microbial sulfate reduction. The dsrAB were also widely observed in the metagenomic pools whereas the frequency of dsrAB genes was generally smaller than that of rdhA-homologous genes. The phylogenetic composition of rdhA-homologous genes was similar among the five depth horizons. Our metagenomic data revealed that subseafloor rdhA homologs are more diverse than previously identified from PCR-based molecular studies. Spatial distribution of similar rdhA homologs across wide depositional ages indicates that the heterotrophic metabolic processes mediated by the genes can be ecologically important, functioning in the organic-rich subseafloor sedimentary biosphere. PMID:24624126

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes.

PubMed

Kawai, Mikihiko; Futagami, Taiki; Toyoda, Atsushi; Takaki, Yoshihiro; Nishi, Shinro; Hori, Sayaka; Arai, Wataru; Tsubouchi, Taishi; Morono, Yuki; Uchiyama, Ikuo; Ito, Takehiko; Fujiyama, Asao; Inagaki, Fumio; Takami, Hideto

2014-01-01

Marine subsurface sediments on the Pacific margin harbor diverse microbial communities even at depths of several hundreds meters below the seafloor (mbsf) or more. Previous PCR-based molecular analysis showed the presence of diverse reductive dehalogenase gene (rdhA) homologs in marine subsurface sediment, suggesting that anaerobic respiration of organohalides is one of the possible energy-yielding pathways in the organic-rich sedimentary habitat. However, primer-independent molecular characterization of rdhA has remained to be demonstrated. Here, we studied the diversity and frequency of rdhA homologs by metagenomic analysis of five different depth horizons (0.8, 5.1, 18.6, 48.5, and 107.0 mbsf) at Site C9001 off the Shimokita Peninsula of Japan. From all metagenomic pools, remarkably diverse rdhA-homologous sequences, some of which are affiliated with novel clusters, were observed with high frequency. As a comparison, we also examined frequency of dissimilatory sulfite reductase genes (dsrAB), key functional genes for microbial sulfate reduction. The dsrAB were also widely observed in the metagenomic pools whereas the frequency of dsrAB genes was generally smaller than that of rdhA-homologous genes. The phylogenetic composition of rdhA-homologous genes was similar among the five depth horizons. Our metagenomic data revealed that subseafloor rdhA homologs are more diverse than previously identified from PCR-based molecular studies. Spatial distribution of similar rdhA homologs across wide depositional ages indicates that the heterotrophic metabolic processes mediated by the genes can be ecologically important, functioning in the organic-rich subseafloor sedimentary biosphere.

Sediment Production From Small Undisturbed Forested Basins In The Upper Coastal Plain

Treesearch

Daniel A. Marion; Greg Malstaff; Howard G. Halverson

1996-01-01

Forest lands in the Upper Coastal Plain (UCP) of the American South are widely recognized as producing water with relatrvely low amounts of sediment. Previous research has established that sediment concentrations from forest basins lacking well-defined channel networks averages 5.3 to 6.2 kg of sediment per hectare per centimeter of runoff (kg/ha-cm) in this...

Sunxiuqinia faeciviva sp. nov., a facultatively anaerobic organoheterotroph of the Bacteroidetes isolated from deep subseafloor sediment.

PubMed

Takai, Ken; Abe, Mariko; Miyazaki, Masayuki; Koide, Osamu; Nunoura, Takuro; Imachi, Hiroyuki; Inagaki, Fumio; Kobayashi, Tohru

2013-05-01

A facultatively anaerobic organoheterotroph, designated JAM-BA0302(T), was isolated from a deep subseafloor sediment at a depth of 247.1 m below the seafloor off the Shimokita Peninsula of Japan in the north-western Pacific Ocean (Site C9001 , water depth 1180 m). Cells of strain JAM-BA0302(T) showed gliding motility and were thin, long rods with peritrichous fimbriae-like structures. Growth occurred at 4-37 °C (optimum 30 °C; doubling time 8 h), at pH 5.4-8.3 (optimum pH 7.5) and with 5-60 g NaCl l(-1) (optimum 20-25 g l(-1)). The isolate utilized proteinaceous substrates such as yeast extract, tryptone, casein and Casamino acids with O2 respiration or fermentation. Strain JAM-BA0302(T) was a piezotolerant bacterium that could grow at pressures as high as 25 MPa under aerobic conditions and 10 MPa under anaerobic conditions. The G+C content of the genomic DNA was 43.2 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain JAM-BA0302(T) was most closely related to yet-undescribed strains recently isolated from various marine sedimentary environments (>99.6 % 16S rRNA gene sequence similarity) and was moderately related to Sunxiuqinia elliptica DQHS-4(T), isolated from a sea cucumber farm sediment (95.5 % 16S rRNA gene sequence similarity) within the Bacteroidetes. The phylogenetic analysis suggested that the isolate should belong to the genus Sunxiuqinia. However, low DNA-DNA relatedness (<11 %) and many physiological and molecular properties differentiated the isolate from those previously describedhttp://dx.doi.org/10.1601/nm.22746. We propose here a novel species of the genus Sunxiuqinia, with the name Sunxiuqinia faeciviva sp. nov. The type strain is JAM-BA0302(T) ( = JCM 15547(T)  = NCIMB 14481(T)).

Wenzhouxiangella sediminis sp. nov. isolated from coastal sediment

USDA-ARS?s Scientific Manuscript database

A novel Gram-stain-negative, non-spore-forming, no flagellum, facultatively anaerobic, oxidase-negative, catalase- positive, rod-shaped strain, designated XDB06**T, was isolated from coastal sediment of Xiaoshi Island, Weihai, China. Optimal growth occurred at 37 °C, pH 7.5 and with 4.0% (w/v) NaCl....

Cellular content of biomolecules in sub-seafloor microbial communities

NASA Astrophysics Data System (ADS)

Braun, Stefan; Morono, Yuki; Becker, Kevin W.; Hinrichs, Kai-Uwe; Kjeldsen, Kasper U.; Jørgensen, Bo B.; Lomstein, Bente Aa.

2016-09-01

Microbial biomolecules, typically from the cell envelope, can provide crucial information about distribution, activity, and adaptations of sub-seafloor microbial communities. However, when cells die these molecules can be preserved in the sediment on timescales that are likely longer than the lifetime of their microbial sources. Here we provide for the first time measurements of the cellular content of biomolecules in sedimentary microbial cells. We separated intact cells from sediment matrices in samples from surficial, deeply buried, organic-rich, and organic-lean marine sediments by density centrifugation. Amino acids, amino sugars, muramic acid, and intact polar lipids were analyzed in both whole sediment and cell extract, and cell separation was optimized and evaluated in terms of purity, separation efficiency, taxonomic resemblance, and compatibility to high-performance liquid chromatography and mass spectrometry for biomolecule analyses. Because cell extracts from density centrifugation still contained considerable amounts of detrital particles and non-cellular biomolecules, we further purified cells from two samples by fluorescence-activated cell sorting (FACS). Cells from these highly purified cell extracts had an average content of amino acids and lipids of 23-28 fg cell-1 and 2.3 fg cell-1, respectively, with an estimated carbon content of 19-24 fg cell-1. In the sediment, the amount of biomolecules associated with vegetative cells was up to 70-fold lower than the total biomolecule content. We find that the cellular content of biomolecules in the marine subsurface is up to four times lower than previous estimates. Our approach will facilitate and improve the use of biomolecules as proxies for microbial abundance in environmental samples and ultimately provide better global estimates of microbial biomass.

Towards the development of a combined Norovirus and sediment transport model for coastal waters

NASA Astrophysics Data System (ADS)

Barry, K.; O'Kane, J. P. J.

2009-04-01

Sewage effluent in coastal waters used for oyster culture poses a risk to human health. The primary pathogen in outbreaks of gastroenteritis following consumption of raw oysters is the Norovirus or "winter vomiting bug". The Norovirus is a highly infectious RNA virus of the Caliciviridae taxonomic family. It has a long survival time in coastal waters (T90 = 30 days in winter). Oysters selectively concentrate Norovirus in their digestive ducts. The virus cannot be removed by conventional depuration. The primary goal of the research is to quantify the risk of Norovirus infection in coastal waters through physically-based high-resolution numerical modelling. Cork Harbour and Clew Bay in Ireland provide case studies for the research. The models simulate a number of complex physical, chemical and biological processes which influence the transport and decay of the virus as well as its bioaccumulation in oyster tissue. The current phase of the research is concerned with the adsorption of the virus to suspended sediment in the water column. Adsorbed viruses may be taken out of the water column when sedimentation occurs and, subsequently, be added to it with resuspension of the bed sediment. Preliminary simulations of the Norovirus-sediment model indicate that suspended sediment can influence the transport of the virus in coastal waters when a high sediment-water partitioning coefficient is used and the model is run under calm environmental conditions. In this instance a certain fraction of the adsorbed viruses are taken out of the water column by sedimentation and end up locked in the bed sediment. Subsequently, under storm conditions, a large number of viruses in the bed are released into the water column by erosion of the bed and a risk of contamination occurs at a time different to when the viruses were initially released into the body of water.

Evolution of radioactive dose rates in fresh sediment deposits along coastal rivers draining Fukushima contamination plume

PubMed Central

Evrard, Olivier; Chartin, Caroline; Onda, Yuichi; Patin, Jeremy; Lepage, Hugo; Lefèvre, Irène; Ayrault, Sophie; Ottlé, Catherine; Bonté, Philippe

2013-01-01

Measurement of radioactive dose rates in fine sediment that has recently deposited on channel bed-sand provides a solution to address the lack of continuous river monitoring in Fukushima Prefecture after Fukushima Dai-ichi nuclear power plant (FDNPP) accident. We show that coastal rivers of Eastern Fukushima Prefecture were rapidly supplied with sediment contaminated by radionuclides originating from inland mountain ranges, and that this contaminated material was partly exported by typhoons to the coastal plains as soon as by November 2011. This export was amplified during snowmelt and typhoons in 2012. In 2013, contamination levels measured in sediment found in the upper parts of the catchments were almost systematically lower than the ones measured in nearby soils, whereas their contamination was higher in the coastal plains. We thereby suggest that storage of contaminated sediment in reservoirs and in coastal sections of the river channels now represents the most crucial issue. PMID:24165695

Concentrations and annual fluxes of sediment-associated chemical constituents from conterminous US coastal rivers using bed sediment data

USGS Publications Warehouse

Horowitz, Arthur J.; Stephens, Verlin C.; Elrick, Kent A.; Smith, James J.

2012-01-01

Coastal rivers represent a significant pathway for the delivery of natural and anthropogenic sediment-associated chemical constituents to the Atlantic, Pacific and Gulf of Mexico coasts of the conterminous USA. This study entails an accounting segment using published average annual suspended sediment fluxes with published sediment-associated chemical constituent concentrations for (1) baseline, (2) land-use distributions, (3) population density, and (4) worldwide means to estimate concentrations/annual fluxes for trace/major elements and total phosphorus, total organic and inorganic carbon, total nitrogen, and sulphur, for 131 coastal river basins. In addition, it entails a sampling and subsequent chemical analysis segment that provides a level of ‘ground truth’ for the calculated values, as well as generating baselines for sediment-associated concentrations/fluxes against which future changes can be evaluated. Currently, between 260 and 270 Mt of suspended sediment are discharged annually from the conterminous USA; about 69% is discharged from Gulf rivers (n = 36), about 24% from Pacific rivers (n = 42), and about 7% from Atlantic rivers (n = 54). Elevated sediment-associated chemical concentrations relative to baseline levels occur in the reverse order of sediment discharges:Atlantic rivers (49%)>Pacific rivers (40%)>Gulf rivers (23%). Elevated trace element concentrations (e.g. Cu, Hg, Pb, Zn) frequently occur in association with present/former industrial areas and/or urban centres, particularly along the northeast Atlantic coast. Elevated carbon and nutrient concentrations occur along both the Atlantic and Gulf coasts but are dominated by rivers in the urban northeast and by southeastern and Gulf coast (Florida) ‘blackwater’ streams. Elevated Ca, Mg, K, and Na distributions tend to reflect local petrology, whereas elevated Ti, S, Fe, and Al concentrations are ubiquitous, possibly because they have substantial natural as well as anthropogenic sources

Variability of subseafloor viral abundance at the geographically and geologically distinct continental margins.

PubMed

Yanagawa, Katsunori; Morono, Yuki; Yoshida-Takashima, Yukari; Eitoku, Masamitsu; Sunamura, Michinari; Inagaki, Fumio; Imachi, Hiroyuki; Takai, Ken; Nunoura, Takuro

2014-04-01

We studied the relationship between viral particle and microbial cell abundances in marine subsurface sediments from three geographically distinct locations in the continental margins (offshore of the Shimokita Peninsula of Japan, the Cascadia Margin off Oregon, and the Gulf of Mexico) and found depth variations in viral abundances among these sites. Viruses in sediments obtained offshore of the Shimokita and in the Cascadia Margin generally decreased with increasing depth, whereas those in sediments from the Gulf of Mexico were relatively constant throughout the investigated depths. In addition, the abundance ratios of viruses to microbial cells notably varied among the sites, ranging between 10(-3) and 10(1) . The subseafloor viral abundance offshore of the Shimokita showed a positive relationship with the microbial cell abundance and the sediment porosity. In contrast, no statistically significant relationship was observed in the Cascadia Margin and the Gulf of Mexico sites, presumably due to the long-term preservation of viruses from enzymatic degradation within the low-porosity sediments. Our observations indicate that viral abundance in the marine subsurface sedimentary environment is regulated not only by in situ production but also by the balance of preservation and decay, which is associated with the regional sedimentation processes in the geological settings. © 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

SEDIMENT HAZARD ASSESSMENT FOR NEAR-COASTAL AREAS OF THE GULF OF MEXICO

EPA Science Inventory

Sediment contamination is a major problem in many coastal areas in the U.S. and has emerged as an important ecological issue for several geographic areas. Sediment chemical and biological quality is unknown in many areas of the Gulf of Mexico. To provide some information on this ...

Photolytic Release of Dissolved Vanadium and Copper from Resuspended Coastal Marine Sediments

NASA Astrophysics Data System (ADS)

Skrabal, S. A.; Hammaker, S. N.; McBurney, A. W.; Avery, G. B., Jr.; Kieber, R. J.; Mead, R. N.

2016-02-01

Sunlight photolysis engenders release of dissolved vanadium (V), copper (Cu), and dissolved organic carbon (DOC) from a wide variety of resuspendable coastal marine sediments. Net photoreleases after 6 h of simulated sunlight were as high as 12 nM for Cu and as high as 15 nM for V. Release of Cu significantly correlated with sediment Cu. Photoreleased Cu (but not V) correlated with sediment Fe content, suggesting that photoreduction of Fe oxide carrier phases may be an important photoproduction mechanism for Cu. Longer term experiments showed continued release of metals that were not immediately readsorbed back onto sediments after 24 h of irradiation suggesting that photoproduced metals persist in the dissolved phase and are not immediately scavenged onto particles. Experiments utilizing differing total suspended sediment (TSS) levels show that, although higher TSS causes more photoproduction of Cu and V, the amount produced per mass of sediment is greatest at the lowest TSS. Vanadium photoproduction increased in Macondo oil-amended sediments compared to controls after a one-month incubation period suggesting that the oil may be a source of this metal to the water column. These results imply that photoproduction is an unrecognized source of the micronutrient metals Cu and V to coastal waters.

National Coastal Geology Program: a plan of geologic research on coastal erosion, coastal wetlands, polluted sediments, and coastal hard-mineral resources

USGS Publications Warehouse

,

1990-01-01

More than 50 percent of the U.S. population currently live within 50 miles of an ocean, Great Lake, or major estuary. According to forecasts, the concentration of people along our coastlines will continue to increase into the 21st century. In addition to residential and commercial buildings and facilities worth tens of billions of dollars, the coasts and associated wetlands are natural resources of tremendous value, with estimates in excess of $13 billion per year for commercial and recreational fisheries alone. Human activities and natural processes are stressing the coastal environment. * Each of the coastal states and island territories is suffering problems related to coastal erosion. * Deterioration of wetlands is widespread and of great public concern. * Pollutants carried by rivers or runoff are discharged directly into coastal waters and accumulate in the sediments on the sea floor, in some areas causing damage to living resources and presenting a threat to public health. * Onshore sources for hard-mineral resources, such as sand and gravel used for construction purposes, are becoming increasingly difficult to find. New sources are being sought in coastal waters. Coastal issues will become even more important into the next century if sea level is significantly influenced by climate change and other factors.

Comparison of Radiocarbon Ages of Sediments, Plants, and Shells From Coastal Lakes in North Florida

NASA Astrophysics Data System (ADS)

Wang, Y.; Das, O.; Liu, J.; Xu, X.; Roy, R.; Donoghue, J. F.; Means, G. H.

2017-12-01

Coastal lakes sediments are valuable archives of paleo-hurricanes and environmental changes during the late Quaternary provided that they can be accurately dated. Here, we report new radiocarbon (14C) dates derived from various organic and inorganic substrates, including bulk sediment organic matter, plants, shells, particulate organic matter (POM) and dissolved organic matter (DOM), from three coastal lakes in Florida, and compare these ages to evaluate the "reservoir effect" on 14C dating of both organic and inorganic carbon in these lakes. Bulk sediment organic matter yielded consistently older 14C ages than contemporaneous plants and shell fragments, indicating significant radiocarbon deficiencies in sedimentary organic matter in these coastal lakes, caused by influx of old organic carbon from terrestrial sources (such as soils and ancient peat deposits) in the watershed. Several reversals are observed in the 14C ages of bulk sediment organic matter in sediment cores from these lakes, indicating that input of aged organic matter from terrestrial sources into these lakes can vary considerably over time. DOM and POM samples collected at different times also yielded variable 14C signatures, further confirming the temporal variability in the contribution of old organic carbon from terrestrial sources to the lakes. The 14C age discrepancy between bulk sediment organic matter and co-occurring plant fragments or shells varies from less than one hundred years to nearly three thousand years in sediment cores examined in this study. The results show that 14C ages obtained from bulk sediment organic matter in these coastal lakes are unreliable. Analyses of both modern and fossil shells from one of the lakes suggest that the 14C reservoir effect on inorganic carbon in the lake is small and thus freshwater shells (if preserved in the sediment cores) may serve as a good substrate for 14C dating in the absence of plant fragments. However, unidentifiable shell fragments

Characterization and Modeling of Settling, Consolidation, and Suspension to Optimize Sediment Retention of Sediment Diversions for Coastal Restoration

NASA Astrophysics Data System (ADS)

Sha, X.; Xu, K.; Bentley, S. J.; Robichaux, P.

2016-02-01

Although many studies of sediment diversions have been conducted on the Mississippi Delta, relatively less attention has been paid to understanding sediment retention and basic cohesive sedimentation processes in receiving basins. Our research evaluates long-term (up to six months) sedimentation processes through various laboratory experiments, especially cohesive sediment settling, consolidation and resuspension and their impacts on sediment retention. Bulk sediment samples were collected from West Bay, near Head of Passes of the Mississippi Delta, and the Big Mar basin that receive water and sediment from the Caernarvon Diversion in the upper Breton Sound region of Louisiana, USA. A-230-cm tall settling column with nine sampling ports at 15 cm intervals was used to measure the consolidation for four initial sediment concentrations (10-120 kg m-3) with two salinities (1 ppt & 5 ppt). Samples of sediment slurry were taken from every port at different time intervals up to 15 days or longer (higher concentration needs longer time to consolidate) to record concentrations gravimetrically. A 200 cm long tube was connected to a 50 cm long core chamber to accumulate at least a 10 cm thick sediment column for erosion tests. A dual-core Gust Erosion Microcosm System was employed to measure time-series (0.5, 1, 2, 3, 4, 5, 6 months) erodibility at seven shear stress regimes (0.01-0.60 Pa). Our preliminary results show a significant decrease of erodibility with time and high concentration (120g/L). Salinity impacted on sediment behavior in consolidation experiments. Our study reveals that more enclosed receiving basins, intermittent openings of diversions, or reduced shear stress due to man-made structure all can potentially reduce cohesive sediment erosion in coastal Louisiana. Further results will be analyzed to determine the model constants. Consolidating rates and corresponding erosional changes will be determined to optimize sediment retention in coastal protection.

Water and sediment dynamics in the Red River mouth and adjacent coastal zone

NASA Astrophysics Data System (ADS)

van Maren, D. S.

2007-02-01

The coastline of the Red River Delta is characterized by alternating patterns of rapid accretion and severe erosion. The main branch of the Red River, the Ba Lat, is presently expanding seaward with a main depositional area several km downstream and offshore the Ba Lat River mouth. Sediment deposition rates are approximately 6 m in the past 50 years. Field measurements were done to determine the processes that regulate marine dispersal and deposition of sediment supplied by the Ba Lat. These measurements reveal that the waters surrounding the Ba Lat delta are strongly stratified with a pronounced southward-flowing surface layer. This southward-flowing surface layer is a coastal current which is generated by river plumes that flow into the coastal zone north of the Ba Lat. However, outflow of turbid river water is not continuous and most sediment enters the coastal zone when the alongshore surface velocities are low. As a consequence, most sediment settles from suspension close to the river mouth. In addition to the southward surface flow, the southward near-bottom currents are also stronger than northward currents. Contrasting with the residual flow near-surface, this southward flow component near-bottom is caused by tidal asymmetry. Because most sediment is supplied by the Ba Lat when wave heights are low, sediment is able to consolidate and therefore the long-term deposition is southward of, but still close to, the Ba Lat mouth.

Characterizing Feedbacks Between Environmental Forcing and Sediment Characteristics in Fluvial and Coastal Systems

NASA Astrophysics Data System (ADS)

Feehan, S.; Ruggiero, P.; Hempel, L. A.; Anderson, D. L.; Cohn, N.

2016-12-01

Characterizing Feedbacks Between Environmental Forcing and Sediment Characteristics in Fluvial and Coastal Systems American Geophysical Union, 2016 Fall Meeting: San Francisco, CA Authors: Scott Feehan, Peter Ruggiero, Laura Hempel, and Dylan Anderson Linking transport processes and sediment characteristics within different environments along the source to sink continuum provides critical insight into the dominant feedbacks between grain size distributions and morphological evolution. This research is focused on evaluating differences in sediment size distributions across both fluvial and coastal environments in the U.S. Pacific Northwest. The Cascades' high relief is characterized by diverse flow regimes with high peak/flashy flows and sub-threshold flows occurring in relative proximity and one of the most energetic wave climates in the world. Combining analyses of both fluvial and coastal environments provides a broader understanding of the dominant forces driving differences between each system's grain size distributions, sediment transport processes, and resultant evolution. We consider sediment samples taken during a large-scale flume experiment that simulated floods representative of both high/flashy peak flows analogous to runoff dominated rivers and sub-threshold flows, analogous to spring-fed rivers. High discharge flows resulted in narrower grain size distributions while low flows where less skewed. Relative sediment size showed clear dependence on distance from source and the environments' dominant fluid motion. Grain size distributions and sediment transport rates were also quantified in both wave dominated nearshore and aeolian dominated backshore portions of Long Beach Peninsula, Washington during SEDEX2, the Sandbar-aEolian-Dune EXchange Experiment of summer 2016. The distributions showed spatial patterns in mean grain size, skewness, and kurtosis dependent on the dominant sediment transport process. The feedback between these grain size

Influence of organic matter on trace metal flux in coastal sediments. [Sequim Bay

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schmidt, R.L.; Gibson, C.I.

1978-05-15

These studies indicate that organic matter in coastal sediment constitutes a primary sink for trace metals, both at natural and amended levels. Organic substances are also involved in controlling the mobility and flux of trace metals from sediments. Further, organically-bound trace metals in sediments appear to be an important source to deposit-feeding organisms.

Plant-mediated Sediment Oxygenation in Coastal Wetlands

NASA Astrophysics Data System (ADS)

Koop-Jakobsen, K.

2016-02-01

Belowground sediment oxygenation by wetland plants is an important mechanism controlling many microbial processes and chemical fluxes in coastal wetlands. Although transport of oxygen via the arenthyma tissue and subsequent oxygen loss across root surfaces is well-documented for Spartina grasses, only few studies have measured the oxygenation of sediment surrounding roots and rhizomes. In this study, the degree of sediment oxygenation in Spartina anglica rhizospheres was assessed in situ using a novel multifiber optode system inserting 100 oxygen sensing fiber optodes directly into the rhizosphere. Two closely located, but morphologically different, S. anglica populations growing in permeable sandy sediment and tidal flat deposit, respectively, were investigated. No oxygen was detected inside the rhizospheres at any depth in either location indicating that plant-mediated sediment oxygenation in S. anglica had a limited impact on the bulk anoxic sediment. This was substantiated by planar optode studies showing that sediment oxygenation was confined to the immediate vicinity of the root tips of adventitious root and root hairs stretching only up to 1.5mm away from the roots surface in permeable sandy sediment and 0.4mm in tidal flat deposit, which had a substantially higher oxygen demand. This contrasts previous studies estimating that more than half of the S. anglica rhizosphere volume may be oxygenated, and thereby suggests a high variability in the degree of sediment oxygenation among different S. anglica populations. Furthermore, there may be a significant difference in the degree of sediment oxygenation among different Spartina species; our recent in situ investigation of oxygen profiles in a Spartina alterniflora-dominated marsh suggested that oxygen leakage here may keep the bulk sediment at low oxygen concentration ranging from 0.5-4μM.

Biogenic Mn-Oxides in Subseafloor Basalts

PubMed Central

Ivarsson, Magnus; Broman, Curt; Gustafsson, Håkan; Holm, Nils G.

2015-01-01

The deep biosphere of the subseafloor basalts is recognized as a major scientific frontier in disciplines like biology, geology, and oceanography. Recently, the presence of fungi in these environments has involved a change of view regarding diversity and ecology. Here, we describe fossilized fungal communities in vugs in subseafloor basalts from a depth of 936.65 metres below seafloor at the Detroit Seamount, Pacific Ocean. These fungal communities are closely associated with botryoidal Mn oxides composed of todorokite. Analyses of the Mn oxides by Electron Paramagnetic Resonance spectroscopy (EPR) indicate a biogenic signature. We suggest, based on mineralogical, morphological and EPR data, a biological origin of the botryoidal Mn oxides. Our results show that fungi are involved in Mn cycling at great depths in the seafloor and we introduce EPR as a means to easily identify biogenic Mn oxides in these environments. PMID:26107948

Application of Remote Sensing to Assess the Impact of Short Term Climate Variability on Coastal Sedimentation

NASA Technical Reports Server (NTRS)

Menzel, W. Paul; Huh, Oscar K.; Walker, Nan

2004-01-01

The purpose of this joint University of Wisconsin (UW) and Louisiana State University (LSU) project has been to relate short term climate variation to response in the coastal zone of Louisiana in an attempt to better understand how the coastal zone is shaped by climate variation. Climate variation in this case largely refers to variation in surface wind conditions that affect wave action and water currents in the coastal zone. The primary region of focus was the Atchafalaya Bay and surrounding bays in the central coastal region of Louisiana. Suspended solids in the water column show response to wind systems both in quantity (through resuspension) and in the pattern of dispersement or transport. Wind systems associated with cold fronts are influenced by short term climate variation. Wind energy was used as the primary signature of climate variation in this study because winds are a significant influence on sediment transport in the micro-tidal Gilf of Mexico coastal zone. Using case studies, the project has been able to investigate the influence of short term climate variation on sediment transport. Wind energy data, collected daily for National Weather Service (NWS) stations at Lake Charles and New Orleans, LA, were used as an indicator of short term climate variation influence on seasonal time scales. A goal was to relate wind energy to coastal impact through sediment transport. This goal was partially accomplished by combining remote sensing and wind energy data. Daily high resolution remote sensing observations are needed to monitor the complex coastal zone environment, where winds, tides, and water level all interact to influence sediment transport. The NASA Earth Observing System (EOS) era brings hope for documenting and revealing response of the complex coastal transport mosaic through regular high spatial resolution observations from the Moderate resolution Imaging Spectrometer (MODIS) instrument. MODIS observations were sampled in this project for

Reactive silica fractions in coastal lagoon sediments from the northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Krause, Jeffrey W.; Darrow, Elizabeth S.; Pickering, Rebecca A.; Carmichael, Ruth H.; Larson, Ashley M.; Basaldua, Jose L.

2017-12-01

Continental-margin sediments account for 50% of the oceanic biogenic silica burial despite covering < 10% of its area. In Mississippi Sound, a coastal lagoon in the northern Gulf of Mexico (nGoM), we measured sediment biogenic silica at sites removed from major freshwater discharge sources using the traditional method and a method that has been modified for deltaic systems to quantify other reactive silica pools, specifically those involved in the process of reverse weathering. The magnitude of authigenically-altered biogenic silica during our study was significant and represented, on average, 33% of the total sediment biogenic silica among core depths and sites. Additionally, there was a significant relationship between the degree to which the biogenic silica pool was authigenically altered and the source of the sediment organic matter, with lower modification in sediments corresponding with higher terrestrial organic matter. We observed no positive correlation between the magnitude of authigenic modification and sediment clay content. Thus, our findings suggest that these processes may occur within a variety of sediment compositions and add to a growing body of evidence suggesting that reverse weathering of silica in coastal systems is a significant pathway in the global silica budget.

Sources of sediment to the coastal waters of the Southern California Bight

USGS Publications Warehouse

Warrick, J.A.; Farnsworth, K.L.

2009-01-01

The sources of sediment to the Southern California Bight were investigated with new calculations and published records of sediment fluxes, both natural and anthropogenic. We find that rivers are by far the largest source of sediment, producing over 10 ?? 106 t/yr on average, or over 80% of the sediment input to the Bight. This river flux is variable, however, over both space and time. The rivers draining the Transverse Ranges produce sediment at rates approximately an order of magnitude greater than the Peninsular Ranges (600-1500 t/km2/yr versus <90 t/km2/yr, respectively). Although the Transverse Range rivers represent only 23% of the total Southern California watershed drainage area, they are responsible for over 75% of the total sediment flux. River sediment flux is ephemeral and highly pulsed due to the semiarid climate and the influence of infrequent large storms. For more than 90% of the time, negligible amounts of sediment are discharged from the region's rivers, and over half of the post-1900 sediment load has been discharged during events with recurrence intervals greater than 10 yr. These rare, yet important, events are related to the El Ni??o-Southern Oscillation (ENSO), and the majority of sediment flux occurs during ENSO periods. Temporal trends in sediment discharge due to land-use changes and river damming are also observed. We estimate that there has been a 45% reduction in suspended-sediment flux due to the construction of dams. However, pre-dam sediment loads were likely artificially high due to the massive land-use changes of coastal California to rangeland during the nineteenth century. This increase in sediment production is observed in estuarine deposits throughout coastal California, which reveal that sedimentation rates were two to ten times higher during the nineteenth and twentieth centuries than during pre-European colonization. ?? 2009 The Geological Society of America.

Sediment budget variation at watershed scale due to anthropogenic pressures, and its relationship to coastal erosion

NASA Astrophysics Data System (ADS)

Aiello, Antonello; Adamo, Maria; Canora, Filomena

2014-05-01

The transfer of sediments from hydrographic basins towards the coast is a significant pathway of material transfer on Earth. In sedimentary environment, the main portion of sediment that enters the coastal areas is derived originally from erosion in the coastal watersheds. Extensive anthropogenic pressures carried out within coastal basins have long shown negative impacts on littoral environments. In fluvial systems, sediments trapped behind dams and in-stream gravel mining cause the reduction in sediment supply to the coast. Along the Jonian littoral of the Basilicata Region (southern Italy), natural coastal processes have been severely disrupted since the second half of the 20th century as a result of riverbed sand and gravel mining and dam construction, when economic advantages were measured in terms of the development of infrastructure, water storage, and hydropower production for the agricultural, industrial and socio-economic development of the area. Particularly, the large numbers of dams and impoundments that have been built in the hydrographic basins have led a signi?cant reduction on river sediment loads. As a result, the Jonian littoral is experiencing a catalysed erosion phenomenon. In order to increase understanding of the morpho-dynamics of the Jonian littoral environment and more fully appreciate the amount of coastal erosion, an evaluation of the sediment budget change due to dam construction within the hydrographic basins of the Basilicata Region needs to be explored. Since quantitative data on decadal trends in river sediment supply before and after dam construction are lacking, as well as updated dam silting values, river basin assessment of the spatial patterns and estimated amount of sediment erosion and deposition are important in evaluating changes in the sediment budget. As coastal areas are being affected by an increasing number of population and socio-economic activities, the amount of sediment deficit at the littoral can permit to

Effects of Emergent Vegetation on Sediment Dynamics within a Retreating Coastal Marshland

NASA Astrophysics Data System (ADS)

Stellern, C.; Grossman, E.; Fuller, R.; Wallin, D.; Linneman, S. R.

2015-12-01

Coastal emergent vegetation in estuaries physically interrupts flow within the water column, reduces wave energy and increases sediment deposition. Previous workers conclude that wave attenuation rates decrease exponentially with distance from the marsh edge and are dependent on site and species-specific plant characteristics (Yang et al., 2011). Sediment deposition may exhibit similar patterns; however, sediment, geomorphic and habitat models seldom integrate site-specific biophysical plant parameters into change analyses. We paired vegetation and sediment dynamic studies to: (1) characterize vegetation structure, (2) estimate sediment available for deposition, (3) estimate rate, distribution and composition of sediment deposits, (4) determine sediment accumulation on vegetation, (5) compare sediment deposition within dense tidal wetland relative to non-vegetated tidal flat. These studies integrate a variety of monitoring methods, including the use of sediment traps, turbidity sensors, side-on photographs of vegetation and remote sensing image analysis. We compared sedimentation data with vegetation characteristics and spatial distribution data to examine the relative role of vegetation morphologic traits (species, stem density, biomass, distribution, tidal channels, etc.) on sediment dynamics. Our study is focused on Port Susan Bay of Washington State; a protected delta that has experienced up to 1 kilometer of marsh retreat (loss) over the past fifty years. Preliminary results show that the highest winter deposition occurred in the high marsh/mid-marsh boundary, up to 300m inland of the marsh edge, where bulrush species are most dense. These results will inform restoration efforts aimed at reestablishing sediment supply to the retreating marshland. This research is necessary to understand the vulnerability and adaptability of coastal marshlands to climate change related stressors such as, increased water levels (sea-level rise) and wave energy.

The stable carbon isotope biogeochemistry of acetate and other dissolved carbon species in deep subseafloor sediments at the northern Cascadia Margin

USGS Publications Warehouse

Heuer, Verena B.; Pohlman, John W.; Torres, Marta E.; Elvert, Marcus; Hinrichs, Kai-Uwe

2009-01-01

Ocean drilling has revealed the existence of vast microbial populations in the deep subseafloor, but to date little is known about their metabolic activities. To better understand the biogeochemical processes in the deep biosphere, we investigate the stable carbon isotope chemistry of acetate and other carbon-bearing metabolites in sediment pore-waters. Acetate is a key metabolite in the cycling of carbon in anoxic sediments. Its stable carbon isotopic composition provides information on the metabolic processes dominating acetate turnover in situ. This study reports our findings for a methane-rich site at the northern Cascadia Margin (NE Pacific) where Expedition 311 of the Integrated Ocean Drilling Program (IODP) sampled the upper 190 m of sediment. At Site U1329, δ13C values of acetate span a wide range from −46.0‰ to −11.0‰ vs. VPDB and change systematically with sediment depth. In contrast, δ13C values of both the bulk dissolved organic carbon (DOC) (−21.6 ± 1.3‰ vs. VPDB) and the low-molecular-weight compound lactate (−20.9 ± 1.8‰ vs. VPDB) show little variability. These species are interpreted to represent the carbon isotopic composition of fermentation products. Relative to DOC, acetate is up to 23.1‰ depleted and up to 9.1‰ enriched in 13C. Broadly, 13C-depletions of acetate relative to DOC indicate flux of carbon from acetogenesis into the acetate pool while 13C-enrichments of pore-water acetate relative to DOC suggest consumption of acetate by acetoclastic methanogenesis. Isotopic relationships between acetate and lactate or DOC provide new information on the carbon flow and the presence and activity of specific functional microbial communities in distinct biogeochemical horizons of the sediment. In particular, they suggest that acetogenic CO2-reduction can coexist with methanogenic CO2-reduction, a notion contrary to the hypothesis that hydrogen levels are controlled by the thermodynamically most favorable electron

Rapid bacterial colonization of low-density polyethylene microplastics in coastal sediment microcosms.

PubMed

Harrison, Jesse P; Schratzberger, Michaela; Sapp, Melanie; Osborn, A Mark

2014-09-23

Synthetic microplastics (≤5-mm fragments) are emerging environmental contaminants that have been found to accumulate within coastal marine sediments worldwide. The ecological impacts and fate of microplastic debris are only beginning to be revealed, with previous research into these topics having primarily focused on higher organisms and/or pelagic environments. Despite recent research into plastic-associated microorganisms in seawater, the microbial colonization of microplastics in benthic habitats has not been studied. Therefore, we employed a 14-day microcosm experiment to investigate bacterial colonization of low-density polyethylene (LDPE) microplastics within three types of coastal marine sediment from Spurn Point, Humber Estuary, U.K. Bacterial attachment onto LDPE within sediments was demonstrated by scanning electron microscopy and catalyzed reporter deposition fluorescence in situ hybridisation (CARD-FISH). Log-fold increases in the abundance of 16S rRNA genes from LDPE-associated bacteria occurred within 7 days with 16S rRNA gene numbers on LDPE surfaces differing significantly across sediment types, as shown by quantitative PCR. Terminal-restriction fragment length polymorphism (T-RFLP) analysis demonstrated rapid selection of LDPE-associated bacterial assemblages whose structure and composition differed significantly from those in surrounding sediments. Additionally, T-RFLP analysis revealed successional convergence of the LDPE-associated communities from the different sediments over the 14-day experiment. Sequencing of cloned 16S rRNA genes demonstrated that these communities were dominated after 14 days by the genera Arcobacter and Colwellia (totalling 84-93% of sequences). Attachment by Colwellia spp. onto LDPE within sediments was confirmed by CARD-FISH. These results demonstrate that bacteria within coastal marine sediments can rapidly colonize LDPE microplastics, with evidence for the successional formation of plastisphere-specific bacterial

[Distribution of polycyclic aromatic hydrocarbons in water and sediment from Zhoushan coastal area, China].

PubMed

Jiang, Min; Tuan, Le Huy; Mei, Wei-Ping; Ruan, Hui-Hui; Wu, Hao

2014-07-01

The spatial and temporal distribution of 16 polycyclic aromatic hydrocarbons (PAHs) has been investigated in water and sediments of Zhoushan coastal area every two months in 2012. The concentrations of total PAHs ranged from 382.3 to 816.9 ng x L(-1), with the mean value of 552.5 ng x L(-1) in water; whereas it ranged from 1017.9 to 3047.1 ng x g(-1), with the mean value of 2 022.4 ng x g(-1) in sediment. Spatial distribution showed that Yangshan and Yanwoshan offshore area had the maximum and minimum of total PAHs contents in water, while the maximum and minimum occurred at Yangshan and Zhujiajian Nansha offshore area in sediment. Temporal distribution revealed that total PAHs contents in water reached the maximum and minimum values in October and June, however in sediments these values were found in August and June, respectively. The PAHs pollution was affected by oil emission, charcoal and coal combustion. Using the biological threshold and exceeded coefficient method to assess the ecological risk of PAHs in Zhoushan coastal area, the result showed that sigma PAHs had a lower probability of potential risk, while there was a higher probability of potential risk for acenaphthylene monomer, and there might be ecological risk for acenaphthene and fluorene. Distribution of PAHs between sediment and water showed that Zhoushan coastal sediment enriched a lot of PAHs, meanwhile the enrichment coefficient (K(d) value) of sediment in Daishan island was larger than that in Zhoushan main island.

Coastal circulation and sediment dynamics in Hanalei Bay, Kaua'i, Hawaii: Part II: tracking recent fluvial sedimentation; isotope stratigraphy obtained in Summer 2005

USGS Publications Warehouse

Draut, Amy E.; Field, Michael E.; Bothner, Michael H.; Logan, Joshua B.; Casso, Michael A.; Baldwin, Sandra M.; Storlazzi, Curt D.

2006-01-01

Delivery and dispersal of fluvial sediment in Hanalei Bay, Kaua’i, Hawaii, have important implications for the health of local coral reefs. The reef community in Hanalei Bay represents a relatively healthy ecosystem. However, the reefs are periodically stressed by storm waves, and increases in sediment and dissolved substances from the Hanalei River have the potential to cause additional stress. Increased turbidity and sedimentation on corals during Hanalei River floods that occur in seasons of low wave energy, when sediment would not be readily remobilized and advected out of the bay, could affect the health and sustainability of coral reefs and the many associated species. Measurements of short-lived isotopes 7Be and 137Cs in sediment cores have been used to trace the thickness and distribution of terrestrial sediment in Hanalei Bay, in order to assess spatial and temporal patterns of sediment deposition and remobilization relative to coral-reef locations. A third isotope, 210Pb, derived primarily from seawater, provides additional information about recent sedimentary history. Isotope profiles and observations of sedimentary facies from cores collected at multiple locations in June 2005, and again in August 2005, indicate the presence of recent fluvial sediment and organic debris in the east part of the bay near the mouth of the Hanalei River. Away from the immediate vicinity of the river mouth, sediment in the uppermost 1 m below the sea floor had not retained a significant quantity of fluvial sediment within the eight months prior to either sampling effort. During the study interval in summer 2005 the Hanalei River had no major floods and there was relatively little sediment input to the bay. Sediment away from the river mouth was dominated by carbonate sand, although some terrestrial sediment was present in sub-sea-floor horizons. Sedimentary facies and isotope inventories throughout the bay showed substantial spatial heterogeneity. Sediment cores will be

Diatoms dominate the eukaryotic metatranscriptome during spring in coastal 'dead zone' sediments.

PubMed

Broman, Elias; Sachpazidou, Varvara; Dopson, Mark; Hylander, Samuel

2017-10-11

An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as 'dead zones') mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal 'dead zone' Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic 'signatures'. By contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on 'standby' to exploit the environment if they reach suitable habitats. © 2017 The Author(s).

Heavy metals in marine coastal sediments: assessing sources, fluxes, history and trends.

PubMed

Frignani, Mauro; Bellucci, Luca Giorgio

2004-01-01

Examples are presented from the Adriatic Sea, the Ligurian Sea and the Venice Lagoon to illustrate different approaches to the study of anthropogenic metals in marine coastal sediments. These examples refer to studies of areal distribution and transport mechanisms, individuation of the sources, sediment dating, chronology of the fluxes, present and past trends. In particular, some of the findings achieved in studying the Venice Lagoon are discussed from the point of view of anthropogenic changes both in sediment composition and contaminant fluxes.

Determination of sedimentation, diffusion, and mixing rates in coastal sediments of the eastern Red Sea via natural and anthropogenic fallout radionuclides.

PubMed

Al-Mur, Bandar A; Quicksall, Andrew N; Kaste, James M

2017-09-15

The Red Sea is a unique ecosystem with high biodiversity in one of the warmest regions of the world. In the last five decades, Red Sea coastal development has rapidly increased. Sediments from continental margins are delivered to depths by advection and diffusion-like processes which are difficult to quantify yet provide invaluable data to researchers. Beryllium-7, lead-210 and ceseium-137 were analyzed from sediment cores from the near-coast Red Sea near Jeddah, Saudi Arabia. The results of this work are the first estimates of diffusion, mixing, and sedimentation rates of the Red Sea coastal sediments. Maximum chemical diffusion and particle mixing rates range from 69.1 to 380cm -2 y -1 and 2.54 to 6.80cm -2 y -1 , respectively. Sedimentation rate is constrained to approximately 0.6cm/yr via multiple methods. These data provide baselines for tracking changes in various environmental problems including erosion, marine benthic ecosystem silting, and particle-bound contaminant delivery to the seafloor. Copyright © 2017. Published by Elsevier Ltd.

Settling characteristics of fine-grained sediments used in Louisiana coastal land building and restoration projects

NASA Astrophysics Data System (ADS)

Ghose Hajra, M.

2016-02-01

Coastal property development, sea level rise, geologic subsidence, loss of barrier islands, increasing number and intensity of coastal storms and other factors have resulted in water quality degradation, wetlands loss, reduced storm and surge protection, ground settlement, and other challenges in coastal areas throughout the world. One of the goals towards reestablishing a healthy coastal ecosystem is to rebuild wetlands with river diversion or sediment conveyance projects that optimally manage and allocate sediments, minimally impact native flora and fauna, and positively affect the water quality. Engineering properties and material characteristics of the dredged material and foundation soils are input parameters in several mathematical models used to predict the long term behavior of the dredged material and foundation soil. Therefore, proper characterization of the dredged material and foundation soils is of utmost importance in the correct design of a coastal restoration and land reclamation project. The sedimentation and consolidation characteristics of the dredged material as well as their effects on the time rate of settlement of the suspended solid particles and underlying foundation soil depend, among other factors, on the (a) grain size distribution of the dredged material, (b) salinity (fresh, brackish, or saltwater environment) of the composite slurry, and (c) concentration of the solid particles in the slurry. This paper will present the results from column settling tests and self-weight consolidation tests performed on dredged samples obtained from actual restoration projects in Louisiana. The effects of salinity, grain size distribution, and initial particle concentration on the sedimentation and consolidation parameters of the dredged material will also be discussed.

In situ time-series measurements of subseafloor sediment properties

USGS Publications Warehouse

Wheatcroft, R.A.; Stevens, A.W.; Johnson, R.V.

2007-01-01

The capabilities and diversity of subsurface sediment sensors lags significantly from what is available for the water column, thereby limiting progress in understanding time-dependent seabed exchange and high-frequency acoustics. To help redress this imbalance, a new instrument, the autonomous sediment profiler (ASP), is described herein. ASP consists of a four-electrode, Wenner-type resistivity probe and a thermistor that log data at 0.1-cm vertical intervals over a 58-cm vertical profile. To avoid resampling the same spot on the seafloor, the probes are moved horizontally within a 20 times 100-cm-2 area in one of three preselected patterns. Memory and power capacities permit sampling at hourly intervals for up to 3-mo duration. The system was tested in a laboratory tank and shown to be able to resolve high-frequency sediment consolidation, as well as changes in sediment roughness. In a field test off the southern coast of France, the system collected resistivity and temperature data at hourly intervals for 16 d. Coupled with environmental data collected on waves, currents, and suspended sediment, the ASP is shown to be useful for understanding temporal evolution of subsurface sediment porosity, although no large depositional or erosional events occurred during the deployment. Following a rapid decrease in bottom-water temperature, the evolution of the subsurface temperature field was consistent with the 1-D thermal diffusion equation coupled with advection in the upper 3-4 cm. Collectively, the laboratory and field tests yielded promising results on time-dependent seabed change.

Nitrous Oxide Production and Fluxes from Coastal Sediments under Varying Environmental Conditions

NASA Astrophysics Data System (ADS)

Ziebis, W.; Wankel, S. D.; de Beer, D.; Dentinger, J.; Buchwald, C.; Charoenpong, C.

2014-12-01

Although coastal zones represent important contributors to the increasing levels of atmospheric nitrous oxide (N2O), it is still unclear which role benthic processes play and whether marine sediments represent sinks or sources for N2O, since interactions among closely associated microbial groups lead to a high degree of variability. In addition, coastal areas are extremely dynamic regions, often exposed to increased nutrient loading and conditions of depleted oxygen. We investigated benthic N2O fluxes and how environmental conditions affect N2O production in different sediments at 2 different geographical locations (German Wadden Sea, a California coastal lagoon). At each location, a total of 32 sediment cores were taken in areas that differed in sediment type, organic content and pore-water nutrient concentrations, as well as in bioturbation activity. Parallel cores were incubated under in-situ conditions, low oxygen and increased nitrate levels for 10 days. Zones of N2O production and consumption were identified in intact cores by N2O microprofiles at the beginning and end of the experiments. In a collaborative effort to determine the dominant sources of N2O, samples were taken throughout the course of the experiments for the determination of the isotopic composition of N2O (as well as nitrate, nitrite and ammonium). Our results indicate that both, nitrate addition and low oxygen conditions in the overlying water, caused an increase of subsurface N2O production in most sediments, with a high variability between different sediment types. N2O production in the sediments was accompanied by N2O consumption, reducing the fluxes to the water column. In general, organic rich sediments showed the strongest response to environmental changes with increased production and efflux of N2O into the overlying water. Bioturbation activity added to the complexity of N2O dynamics by an increase in nitrification-denitrification processes, as well as enhanced pore-water transport

Assessment of changes in nutrient and sediment delivery to and carbon accumulation in coastal oceans of the Eastern United States

NASA Astrophysics Data System (ADS)

Bergamaschi, B. A.; Smith, R. A.; Shih, J. S.; Sohl, T. L.; Sleeter, B. M.; Zhu, Z.

2014-12-01

Land-use and land-cover distributions are primary determinants of terrestrial fluxes of sediments and nutrients to coastal oceans. Sediment and nutrient delivery to coastal waters have already been significantly altered by changes in population and land use, resulting in modified patterns of coastal production and carbon storage. Continued population growth and increasing agricultural areal extent and intensity are expected to accelerate these changes. The USGS LandCarbon project developed prospective future land use and land cover projections based on IPCC scenarios A1b, A2 and B1 to 2050 as the basis for a multitude of biogeochemical assessments. We assessed the impacts on delivery of nutrients and sediments to the coastal ocean, and concomitant carbon storage. Fluxes were estimated using the SPARROW model, calibrated on historical water quality measurements. Significantly greater fluxes of nutrients and sediments to coastal waters by 2050 are projected by the model. For example, for the Eastern United States, nitrate fluxes for 2050 are projected to be16 to 52 percent higher than the baseline year, depending on scenario. As a consequence, an associated increase in the frequency and duration of coastal and estuarine hypoxia events and harmful algal blooms could be expected. Model estimates indicate that these prospective future nutrient and sediment fluxes will increase carbon storage rates in coastal waters by 18 to 56 percent in some regions.

Heavy Metals Contamination in Coastal Sediments of Karachi, Pakistan

NASA Astrophysics Data System (ADS)

Siddique, A.; Mumtaz, M.; Zaigham, N. A.; Mallick, K. A.; Saied, S.; Khwaja, H. A.

2008-12-01

Toxic compounds such as heavy metals exert chronic and lethal effects in animals, plants, and human health. With the rapid industrialization, urbanization, and economic development in Karachi, heavy metals are continuing to be introduced to estuarine and coastal environment through rivers, runoff and land-based point sources. Pollution in the Karachi coastal region (167 km long) is mainly attributed to Lyari and Malir Rivers flowing through the city of Karachi. Both rivers are served by various channels of domestic and industrial wastes carrying more than 300 million gallons per day untreated effluent of 6000 industries and ultimately drain into the beaches of Arabian Sea. Concentrations of selected heavy metals (Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, and Zn) in surface sediments from eighty-eight sites in Karachi coastal region were studied in order to understand metal contamination due to industrialization, urbanization, and economic development in Karachi. Sediment samples were collected in 2005 and 2006. We have found that heavy metal concentrations in surface sediments varied from 0.006 to 24.3 ug/g for Cd, 5.1 to 95 ug/g for Co, 2.9 to 571 ug/g for Cr, 6.9 to 272 ug/g for Cu, 0.55 to 6.5% for Fe, 1.2 to 318 ug/g for Mn, 7.5 to 75 ug/g for Ni, 6.3 to 121 ug/g for Pb, and 3.3 to 389 ug/g for Zn. Enrichment factors (EFs) were calculated to assess whether the concentrations observed represent background or contaminated levels. The highest levels of metals were found to be at the confluence of the Lyari and Malir River streams at the Arabian Sea, indicating the impact of the effluents of the highly urbanized and industrialized city of Karachi. Furthermore, this study assessed heavy metal toxicity risk with the application of Sediment Quality Guideline (SQG) indices (effect range low/effect range median values, ERL/ERM). Results indicated that the potential toxicity of marine environment can cause adverse biological effects to the biota directly and the human health

A novel microbial habitat in the mid-ocean ridge subseafloor

PubMed Central

Summit, Melanie; Baross, John A.

2001-01-01

The subseafloor at the mid-ocean ridge is predicted to be an excellent microbial habitat, because there is abundant space, fluid flow, and geochemical energy in the porous, hydrothermally influenced oceanic crust. These characteristics also make it a good analog for potential subsurface extraterrestrial habitats. Subseafloor environments created by the mixing of hot hydrothermal fluids and seawater are predicted to be particularly energy-rich, and hyperthermophilic microorganisms that broadly reflect such predictions are ejected from these systems in low-temperature (≈15°C), basalt-hosted diffuse effluents. Seven hyperthermophilic heterotrophs isolated from low-temperature diffuse fluids exiting the basaltic crust in and near two hydrothermal vent fields on the Endeavour Segment, Juan de Fuca Ridge, were compared phylogenetically and physiologically to six similarly enriched hyperthermophiles from samples associated with seafloor metal sulfide structures. The 13 organisms fell into four distinct groups: one group of two organisms corresponding to the genus Pyrococcus and three groups corresponding to the genus Thermococcus. Of these three groups, one was composed solely of sulfide-derived organisms, and the other two related groups were composed of subseafloor organisms. There was no evidence of restricted exchange of organisms between sulfide and subseafloor habitats, and therefore this phylogenetic distinction indicates a selective force operating between the two habitats. Hypotheses regarding the habitat differences were generated through comparison of the physiology of the two groups of hyperthermophiles; some potential differences between these habitats include fluid flow stability, metal ion concentrations, and sources of complex organic matter. PMID:11226209

Microbial acetogenesis as a source of organic acids in ancient Atlantic Coastal Plain sediments

USGS Publications Warehouse

Chapelle, F.H.; Bradley, P.M.

1996-01-01

Field and laboratory evidence shows that deeply buried (90-888 m) fine-grained sediments of the Atlantic Coastal Plain contain viable acetogenic microorganisms, and that these microorganisms actively produce organic acids. Concentrations of formate, acetate, and propionate in pore waters extracted from fine-grained sediments ranged from 50 ??M to 5 mM and were much higher than in adjacent pore waters associated with sandy sediments (<2 ??M). Laboratory studies showed that asceptically cored fine-grained sediments incubated under a H2 atmosphere produced formate and acetate, and that H14CO-3 was converted to 14C-acetate and 14C-formate over time. An enrichment culture of these acetogenic microorganisms was recovered from one long-term incubation that showed the presence of several morphologically distinct gram-positive, rod-shaped bacteria. These microorganisms were capable of growth under autotrophic (H2 + CO2), heterotrophic (syringate), and mixotrophic (H2 + CO2 + syringate) conditions. These results suggest that microbial acetogenesis, rather than abiotic processes, is the most important organic acid-producing mechanism during low-temperature (???30 ??C) diagenesis of Atlantic Coastal Plain sediments.

Trends in the suspended-sediment yields of coastal rivers of northern California, 1955–2010

USGS Publications Warehouse

Warrick, J.A.; Madej, Mary Ann; Goñi, M. A.; Wheatcroft, R.A.

2013-01-01

Time-dependencies of suspended-sediment discharge from six coastal watersheds of northern California – Smith River, Klamath River, Trinity River, Redwood Creek, Mad River, and Eel River – were evaluated using monitoring data from 1955 to 2010. Suspended-sediment concentrations revealed time-dependent hysteresis and multi-year trends. The multi-year trends had two primary patterns relative to river discharge: (i) increases in concentration resulting from both land clearing from logging and the flood of record during December 1964 (water year 1965), and (ii) continual decreases in concentration during the decades following this flood. Data from the Eel River revealed that changes in suspended-sediment concentrations occurred for all grain-size fractions, but were most pronounced for the sand fraction. Because of these changes, the use of bulk discharge-concentration relationships (i.e., “sediment rating curves”) without time-dependencies in these relationships resulted in substantial errors in sediment load estimates, including 2.5-fold over-prediction of Eel River sediment loads since 1979. We conclude that sediment discharge and sediment discharge relationships (such as sediment rating curves) from these coastal rivers have varied substantially with time in response to land use and climate. Thus, the use of historical river sediment data and sediment rating curves without considerations for time-dependent trends may result in significant errors in sediment yield estimates from the globally-important steep, small watersheds.

The South Carolina Coastal Erosion Study: Integrated Circulation and Sediment Transport Studies. A Project Overview.

NASA Astrophysics Data System (ADS)

Voulgaris, G.; Warner, J. C.; Work, P. A.; Hanes, D. M.; Haas, K. A.

2004-12-01

The South Carolina Coastal Erosion Study (SCCES) is a cooperative research program funded by the U.S. Geological Survey Coastal and Marine Geology Program and managed by the South Carolina Sea Grant Consortium. The main objective of the study is to understand the factors and processes that control coastal sediment movement along the northern part of the South Carolina coast while at the same time advance our basic understanding of circulation, wave propagation and sediment transport processes. Earlier geological framework studies carried out by the same program provided detailed data on bathymetry, bottom sediment thickness and grain size distribution. They identified an extensive (10km long, 2km wide) sand body deposit located in the inner shelf that has potential use for beach nourishment. The main objectives are to: (1) identify the role of wind-driven circulation in controlling regional sediment distribution on the SC shelf; (2) examine the hypothesis that the shoal is of the "fair-weather type" with bedload being the dominant sediment transport mode and the tidally-averaged flow being at different directions at the two flanks of the shoal; (3) investigate the possibility that the sediment source for the shoal is derived from the nearshore as the result of the convergence of the longshore sediment transport; and finally, (4) quantify the control that the shoal exerts on the nearshore conditions through changes on the wave energy propagation characteristics. Field measurements and numerical modeling techniques are utilized in this project. Two deployments of oceanographic and sediment transport systems took place for a period of 6 months (October 2003 to April 2004) measuring wind forcing, vertical distribution of currents, stratification, and wave spectral characteristics. Further, bed-flow interactions were measured at two locations, with instrumented tripods equipped with pairs of ADVs for measuring turbulence, PC-ADPs for measuring vertical current profiles

A record of recent change in terrestrial sedimentation in a coral-reef environment, La Parguera, Puerto Rico: a response to coastal development?

PubMed

Ryan, K E; Walsh, J P; Corbett, D R; Winter, A

2008-06-01

Increased sediment flux to the coastal ocean due to coastal development is considered a major threat to the viability of coral reefs. A change in the nature of sediment supply and storage has been identified in a variety of coastal settings, particularly in response to European colonization, but sedimentation around reefs has received less attention. This research examines the sedimentary record adjacent to a coastal village that has experienced considerable land-use change over the last few decades. Sediment cores were analyzed to characterize composition and sediment accumulation rates. Sedimentation rates decreased seaward across the shelf from 0.85 cm y(-1) in a nearshore bay to 0.19 cm y(-1) in a fore-reef setting. Data reflected a significant (up to 2x) increase over the last approximately 80 years in terrestrial sediment accumulating in the back-reef setting, suggesting greater terrestrial sediment flux to the area. Reef health has declined, and increased turbidity is believed to be an important impact, particularly when combined with additional stressors.

Integrated Assessment of Heavy Metal Contamination in Sediments from a Coastal Industrial Basin, NE China

PubMed Central

Li, Xiaoyu; Liu, Lijuan; Wang, Yugang; Luo, Geping; Chen, Xi; Yang, Xiaoliang; Gao, Bin; He, Xingyuan

2012-01-01

The purpose of this study is to investigate the current status of metal pollution of the sediments from urban-stream, estuary and Jinzhou Bay of the coastal industrial city, NE China. Forty surface sediment samples from river, estuary and bay and one sediment core from Jinzhou bay were collected and analyzed for heavy metal concentrations of Cu, Zn, Pb, Cd, Ni and Mn. The data reveals that there was a remarkable change in the contents of heavy metals among the sampling sediments, and all the mean values of heavy metal concentration were higher than the national guideline values of marine sediment quality of China (GB 18668-2002). This is one of the most polluted of the world’s impacted coastal systems. Both the correlation analyses and geostatistical analyses showed that Cu, Zn, Pb and Cd have a very similar spatial pattern and come from the industrial activities, and the concentration of Mn mainly caused by natural factors. The estuary is the most polluted area with extremely high potential ecological risk; however the contamination decreased with distance seaward of the river estuary. This study clearly highlights the urgent need to make great efforts to control the industrial emission and the exceptionally severe heavy metal pollution in the coastal area, and the immediate measures should be carried out to minimize the rate of contamination, and extent of future pollution problems. PMID:22768107

Integrated assessment of heavy metal contamination in sediments from a coastal industrial basin, NE China.

PubMed

Li, Xiaoyu; Liu, Lijuan; Wang, Yugang; Luo, Geping; Chen, Xi; Yang, Xiaoliang; Gao, Bin; He, Xingyuan

2012-01-01

The purpose of this study is to investigate the current status of metal pollution of the sediments from urban-stream, estuary and Jinzhou Bay of the coastal industrial city, NE China. Forty surface sediment samples from river, estuary and bay and one sediment core from Jinzhou bay were collected and analyzed for heavy metal concentrations of Cu, Zn, Pb, Cd, Ni and Mn. The data reveals that there was a remarkable change in the contents of heavy metals among the sampling sediments, and all the mean values of heavy metal concentration were higher than the national guideline values of marine sediment quality of China (GB 18668-2002). This is one of the most polluted of the world's impacted coastal systems. Both the correlation analyses and geostatistical analyses showed that Cu, Zn, Pb and Cd have a very similar spatial pattern and come from the industrial activities, and the concentration of Mn mainly caused by natural factors. The estuary is the most polluted area with extremely high potential ecological risk; however the contamination decreased with distance seaward of the river estuary. This study clearly highlights the urgent need to make great efforts to control the industrial emission and the exceptionally severe heavy metal pollution in the coastal area, and the immediate measures should be carried out to minimize the rate of contamination, and extent of future pollution problems.

Application of Remote Sensing to Assess the Impact of Short Term Climate Variability on Coastal Sedimentation

NASA Technical Reports Server (NTRS)

Moeller, Christopher C.; Gunshor, Mathew M.; Menzel, W. Paul; Huh, Oscar K.; Walker, Nan D.; Rouse, Lawrence J.; Frey, Herbert V. (Technical Monitor)

2001-01-01

The University of Wisconsin and Louisiana State University have teamed to study the forcing of winter season cold frontal wind systems on sediment distribution patterns and geomorphology in the Louisiana coastal zone. Wind systems associated with cold fronts have been shown to modify coastal circulation and resuspend sediments along the microtidal Louisiana coast. The assessment includes quantifying the influence of cumulative winter season atmospheric forcing (through surface wind observations) from year to year in response to short term climate variability, such as El Nino events. A correlation between winter cyclone frequency and the strength of El Nino events has been suggested. The atmospheric forcing data are being correlated to geomorphic measurements along western Louisiana's prograding muddy coast. Remote sensing data is being used to map and track sediment distribution patterns for various wind conditions. Transferring a suspended sediment concentration (SSC) algorithm to EOS MODIS observations will enable estimates of SSC in case 2 waters over the global domain. Progress in Year 1 of this study has included data collection and analysis of wind observations for atmospheric forcing characterization, a field activity (TX-2001) to collect in situ water samples with co-incident remote sensing measurements from the NASA ER-2 based MODIS Airborne Simulator (MAS) and the EOS Terra based MODerate resolution Imaging Spectroradiometer (MODIS) instruments, aerial photography and of sediment burial pipe field measurements along the prograding muddy Chenier Plain coast of western Louisiana for documenting coastal change in that dynamic region, and routine collection of MODIS 250 in resolution data for monitoring coastal sediment patterns. The data sets are being used in a process to transfer an SSC estimation algorithm to the MODIS platform. Work is underway on assessing coastal transport for the winter 2000-01 season. Water level data for use in a Geomorphic Impact

Fungal colonies in open fractures of subseafloor basalt

NASA Astrophysics Data System (ADS)

Ivarsson, Magnus; Bengtson, Stefan; Skogby, Henrik; Belivanova, Veneta; Marone, Federica

2013-08-01

The deep subseafloor crust is one of the few great frontiers of unknown biology on Earth and, still today, the notion of the deep biosphere is commonly based on the fossil record. Interpretation of palaeobiological information is thus central in the exploration of this hidden biosphere and, for each new discovery, criteria used to establish biogenicity are challenged and need careful consideration. In this paper networks of fossilized filamentous structures are for the first time described in open fractures of subseafloor basalts collected at the Emperor Seamounts, Pacific Ocean. These structures have been investigated with optical microscopy, environmental scanning electron microscope, energy dispersive spectrometer, X-ray powder diffraction as well as synchrotron-radiation X-ray tomographic microscopy, and interpreted as fossilized fungal mycelia. Morphological features such as hyphae, yeast-like growth and sclerotia were observed. The fossilized fungi are mineralized by montmorillonite, a process that probably began while the fungi were alive. It seems plausible that the fungi produced mucilaginous polysaccharides and/or extracellular polymeric substances that attracted minerals or clay particles, resulting in complete fossilization by montmorillonite. The findings are in agreement with previous observations of fossilized fungi in subseafloor basalts and establish fungi as regular inhabitants of such settings. They further show that fossilized microorganisms are not restricted to pore spaces filled by secondary mineralizations but can be found in open pore spaces as well. This challenges standard protocols for establishing biogenicity and calls for extra care in data interpretation.

Microbial community assembly and evolution in subseafloor sediment.

PubMed

Starnawski, Piotr; Bataillon, Thomas; Ettema, Thijs J G; Jochum, Lara M; Schreiber, Lars; Chen, Xihan; Lever, Mark A; Polz, Martin F; Jørgensen, Bo B; Schramm, Andreas; Kjeldsen, Kasper U

2017-03-14

Bacterial and archaeal communities inhabiting the subsurface seabed live under strong energy limitation and have growth rates that are orders of magnitude slower than laboratory-grown cultures. It is not understood how subsurface microbial communities are assembled and whether populations undergo adaptive evolution or accumulate mutations as a result of impaired DNA repair under such energy-limited conditions. Here we use amplicon sequencing to explore changes of microbial communities during burial and isolation from the surface to the >5,000-y-old subsurface of marine sediment and identify a small core set of mostly uncultured bacteria and archaea that is present throughout the sediment column. These persisting populations constitute a small fraction of the entire community at the surface but become predominant in the subsurface. We followed patterns of genome diversity with depth in four dominant lineages of the persisting populations by mapping metagenomic sequence reads onto single-cell genomes. Nucleotide sequence diversity was uniformly low and did not change with age and depth of the sediment. Likewise, there was no detectable change in mutation rates and efficacy of selection. Our results indicate that subsurface microbial communities predominantly assemble by selective survival of taxa able to persist under extreme energy limitation.

TREATED WASTEWATER AS A SOURCE OF SEDIMENT CONTAMINATION IN GULF OF MEXICO NEAR-COASTAL AREAS

EPA Science Inventory

The primary objective of this baseline survey was to provide some needed perspective on the magnitude of sediment contamination associated with wastewater outfalls discharged to Gulf of Mexico near-coastal areas. The chemical quality and toxicities of whole sediments and pore wa...

Methane in Sediments From Three Tropical, Coastal Lagoons on the Yucatan Peninsula, Mexico

NASA Astrophysics Data System (ADS)

Young, B.; Paytan, A.; Miller, L.; Herrera-Silveira, J.

2002-12-01

Tropical wetlands are significant sources of methane (CH4) to the atmosphere, and the majority of research on methane flux and cycling in the tropics has been conducted in fresh-water wetlands and lakes. However, several previous studies have shown that tropical coastal ecosystems can produce significant methane flux to the atmosphere despite the presence of moderate to marine salinities. Information regarding methane cycling within the sediments is crucial to understanding how natural and anthropogenic changes may influence these systems. We measured methane concentrations in sediments from two tropical coastal lagoons during different seasons, as well as in a third, heavily polluted, lagoon (Terminos) during the rainy season. These three lagoons, Celestun, Chelem, and Terminos, have similar vegetation, seasonal temperature and rainfall patterns, and substrate geology, but very different levels of ground water discharge and pollution. Methane concentrations in Celestun and Terminos lagoon showed high spatial variability(> 0.001 to 5 mmol kg-1 wet sediment), while sediments in Chelem Lagoon, which has near marine salinities and little sewage discharge, showed much lower variability of methane concentrations. Methane concentrations in Celestun sediments displayed two predominant patterns: some profiles contained a peak in methane concentration (1 to 2 mmole methane kg-1 wet sediment) between 5 and 15 cm below the surface while the other sediment profiles instead displayed a steady or monotonic increase in methane concentration with depth to approximately 0.025-0.080 mmol kg-1 at 10-15cm below surface followed by stable methane concentrations to the bottom of the cores (20-45 cm below the surface). A subsurface peak in methane concentrations was also found in some locations in Chelem, however, the concentrations were much lower than those measured in Celestun. Previous studies have shown that sewage pollution may drastically increase methane production in tropical

Climate oscillations reflected in the Arabian Sea subseafloor microbiome

NASA Astrophysics Data System (ADS)

Orsi, William; Coolen, Marco; He, Lijun; Wuchter, Cornelia; Irigoien, Xabier; Chust, Guillem; Johnson, Carl; Hemingway, Jordon; Lee, Mitchell; Galy, Valier; Giosan, Liviu

2016-04-01

Marine sediment contains a vast microbial biosphere that influences global biogeochemical cycles over geological timescales. However, the environmental factors controlling the stratigraphy of subseafloor microbial communities are poorly understood. We studied a sediment core directly underlying the Arabian Sea oxygen minimum zone (OMZ), which exhibits organic carbon rich sapropelic laminae deposited under low oxygen conditions. Consistent with several other cores from the same location, age dating revealed the sapropelic layers coincide with warm North Atlantic millennial-scale Dansgaard-Oeschger events, indicating a direct link between the strength of the OMZ and paleoclimate. A total of 214 samples spanning 13 m and 52 Kyr of deposition were selected for geochemical analyses and paleoclimate proxy measurements, as well as high-throughput metagenomic DNA sequencing of bacteria and archaea. A novel DNA extraction protocol was developed that allowed for direct (unamplified) metagenomic sequencing of DNA from each sample. This dataset represents the highest resolved sedimentary metagenomic sampling profile to date. Analysis of these data together with multiple paleoceanographic proxies show that millennial-scale paleoenvironmental conditions correlate with the metabolism and diversity of bacteria and archaea over the last glacial-interglacial cycle in the Arabian Sea. The metabolic potential for bacterial denitrification correlates with climate-driven OMZ strength and concomitant nitrogen stable isotope fractionation, whereas catabolic potential reflects changing marine organic matter sources across the Last Glacial Maximum. These results indicate that the subsisting microbial communities had been stratified to a large extent by paleoceanographic conditions at the time of deposition. Paleoenvironmental conditions should thus be considered as a mechanism that can help explain microbiome stratigraphy in marine sediment.

Seismic displacement of gently-sloping coastal and marine sediment under multidirectional earthquake loading

USGS Publications Warehouse

Kayen, Robert E.

2017-01-01

Gentle sediment-laden slopes are typical of the onshore coastal zone and offshore continental shelf and slope. Coastal sediment are commonly young weakly consolidated materials that are well stratified, have low strength, and can mobilize shear displacements at low levels of stress. Seismically-driven plastic displacements of these sediment pose a hazard to coastal cities, buried onshore utilities, and offshore infrastructure like harbor protection and outfalls. One-dimensional rigid downslope-directed Newmark sliding block analyses have been used to predict earthquake deformations generally on steeper slopes that are modeled as frictional materials. This study probes the effect of multidirectional earthquake motions on inertial displacements of gently sloping ground of the coastal and offshore condition where soft-compliant soil is expected. Toward that objective, this investigation seeks to understand the effect on Newmark-type displacements of [1] multidirectional earthquake shaking and [2] soil compliance. In order to model multidirectional effects, the earthquake motions are rotated into the local slope strike- and dip-components. On gently sloping ground, including the strike component of motion always results in a larger and more accurate shear stress vector. Strike motions are found to contribute to downslope deformations on any declivity. Compliant response of the soil mass also influences the plastic displacements. The magnitude of seismic displacements can be estimated with a simplified model using only the estimated soil yield-acceleration (ky) and the peak ground velocity (Vmax) of the earthquake motions. Compliance effects can be effectively mapped using the concept of Plastic Displacement Response Spectra (PDRS).

Impact of Ibrahim River on the spatial variation of coastal marine sediment characteristics

NASA Astrophysics Data System (ADS)

Ghsoub, Myriam; Fakhri, Milad; Courp, Thierry; Khalaf, Gaby; Buscail, Roselyne; Ludwig, Wolfgang

2017-04-01

In the aim to evaluate the impact of Ibrahim River on the environmental status of its coastal marine zone, sedimentological (grain size composition), geochemical (organic carbon, total nitrogen, total carbon, organic matter, calcium carbonate, organic and inorganic phosphate) biochemical (chlorophyll-a, pheopigments) and biological parameters (macro-invertebrates) of the sediment were analyzed and interpreted. Three sampling campaigns were executed using the scientific vessel CANA-CNRS on 26-4-2016, 20-6-2016 and 29-7-2016 successively. The samples were collected according to a middle horizontal transectat three different depths (10, 20, and 30 m).The grain size composition of the sediment was mainly composed of fine sand. The obtained values of organic matter ranged between 32 and 54 mg/g. The total nitrogen was between 0.006 and 0.014%. The percentage of calcium carbonate fluctuated between 20 and 30%. This situation may be attributed to the decomposition and the sinking of the shells and some aquatic organism such as Coccolithophores, foraminifers, gastropods and bivalves. Calcium carbonate may also have terrestrial origin related to the carbonated adjacent land and may be exported to the coastal area with the river inputs. The sediment of the studied area was richer in pheopigments (between 0.8 and 3 μg/g) than in chlorophyll-a (less than 0.4 μg/g) witnessing the presence of degraded material due to the high hydrodynamic conditions. Furthermore, the low values of chlorophyll-a witnessed the oligotrophy of the zone. The concentrations of total phosphate ranged between 97 and 148 μg/g. The dominance of the inorganic phosphate at all sampling points indicates that phosphorus is available for the producers, and that the studied area is less contaminated with anthropogenic discharges. This research project reveals the presence of gastropods, crustaceans and some polychaetes along the five studied stations. These groups are generally found in sandy bottoms

Mobilisation of traffic-derived trace metals from road corridors into coastal stream and estuarine sediments, Cairns, northern Australia

NASA Astrophysics Data System (ADS)

Pratt, C.; Lottermoser, B. G.

2007-04-01

This investigation revealed the presence of traffic-derived metals within road, stream and estuarine sediments collected from a coastal catchment, northern Australia. Studied road sediments displayed variable total metal concentrations (median Cd, Cu, Pb, Pd, Pt, Ni and Zn values: 0.19, 42.6, 67.5, 0.064, 0.104, 36.7 and 698 mg/kg, respectively). The distinctly elevated Zn values are due to abundant tyre rubber shreds (as verified by SEM-EDS and correlation analysis). By comparison to the road sediments, background stream sediments taken upstream from roads have relatively low median Pb, Pd, Pt and Zn concentrations (7.3 mg/kg Pb, 0.01 mg/kg Pd, 0.012 mg/kg Pt, 62 mg/kg Zn). Stream and estuarine sediment samples collected below roads have median values of 21.8 mg/kg Pb, 0.014 mg/kg Pd, 0.021 mg/kg Pt and 71 mg/kg Zn, and exhibit 207Pb/206Pb and 208Pb/206Pb ratios that appear on a mixing line between the isotopically distinct background stream sediments and the road sediments. Thus, mobilisation of dusts and sediments from road surfaces has resulted in relatively elevated Pb, Pd, Pt and Zn concentrations and non-radiogenic Pb isotope ratios in local coastal stream and estuarine sediments. The investigation demonstrates that traffic-derived metals enter coastal stream and estuary sediments at the fringe of the Great Barrier Reef lagoon.

Temperature, productivity and sediment characteristics as drivers of seasonal and spatial variations of dissolved methane in the near-shore coastal areas (Belgian coastal zone, North Sea)

NASA Astrophysics Data System (ADS)

Borges, Alberto V.; Speeckaert, Gaëlle; Champenois, Willy; Scranton, Mary I.; Gypens, Nathalie

2017-04-01

The open ocean is a modest source of CH4 to the atmosphere compared to other natural and anthropogenic CH4 emissions. Coastal regions are more intense sources of CH4 to the atmosphere than open oceanic waters, in particular estuarine zones. The CH4 emission to the atmosphere from coastal areas is sustained by riverine inputs and methanogenesis in the sediments due to high organic matter (OM) deposition. Additionally, natural gas seeps are sources of CH4 to bottom waters leading to high dissolved CH4 concentrations in bottom waters (from tenths of nmol L-1 up to several µmol L-1). We report a data set of dissolved CH4 concentrations obtained at nine fixed stations in the Belgian coastal zone (Southern North Sea), during one yearly cycle, with a bi-monthly frequency in spring, and a monthly frequency during the rest of the year. This is a coastal area with multiple possible sources of CH4 such as from rivers and gassy sediments, and where intense phytoplankton blooms are dominated by the high dimethylsulfoniopropionate (DMSP) producing micro-algae Phaeocystis globosa, leading to DMSP and dimethylsulfide (DMS) concentrations. Furthermore, the BCZ is a site of important OM sedimentation and accumulation unlike the rest of the North Sea. Spatial variations of dissolved CH4 concentrations were very marked with a minimum yearly average of 9 nmol L-1 in one of the most off-shore stations and maximum yearly average of 139 nmol L-1 at one of the most near-shore stations. The spatial variations of dissolved CH4 concentrations were related to the organic matter (OM) content of sediments, although the highest concentrations seemed to also be related to inputs of CH4 from gassy sediments associated to submerged peat. In the near-shore stations with fine sand or muddy sediments with a high OM content, the seasonal cycle of dissolved CH4 concentration closely followed the seasonal cycle of water temperature, suggesting the control of methanogenesis by temperature in these OM

Risk assessment of trace metal-polluted coastal sediments on Hainan Island: A full-scale set of 474 geographical locations covering the entire island.

PubMed

Li, Feng; Lin, Ze-Feng; Wen, Jia-Sheng; Wei, Yan-Sha; Gan, Hua-Yang; He, Hai-Jun; Lin, Jin-Qin; Xia, Zhen; Chen, Bi-Shuang; Guo, Wen-Jie; Tan, Cha-Sheng; Cai, Hua-Yang

2017-12-15

Hainan Island is the second largest island and one of the most famous tourist destinations in China, but sediment contamination by trace metals in coastal areas is a major issue. However, full-scale risk assessments of trace metal-polluted coastal sediments are lacking. In this study, coastal surface sediments from 474 geographical locations covering almost the entire island were collected to identify risk-related variables. Controlling factors and possible sources of trace metals were identified, and the toxicity effects were carefully evaluated. Our results suggest that trace-metal pollution in coastal sediments, which was mainly caused by Pb, Zn and Cu emissions, has primarily resulted from industrial sewage and shipping activities and has threatened the offshore ecosystem of Hainan Island and warrants extensive consideration. This is the first study that has systematically investigated trace metal-polluted coastal sediments throughout the entirety of Hainan Island and provides solid evidence for sustainable marine management in the region. Copyright © 2017 Elsevier Ltd. All rights reserved.

SEDIMENT HABITAT ASSESSMENT FOR TARGETED NEAR-COASTAL AREAS OF THE GULF OF MEXICO: A SUMMARY

EPA Science Inventory

Lewis, Michael A. In press. Sediment Habitat Assessment for Targeted Near-Coastal Areas of the Gulf of Mexico: A Summary. In: Estuarine Indicators Workshop Proceedings. CRC Press, Boca Raton, FL. 25 p. (ERL,GB 1201).

Sediment chemical and biological quality is summarized ...

Coastal microbial quality of surface sediments in different environments along the Italian coast.

PubMed

Chiaretti, G; Onorati, F; Borrello, P; Orasi, A; Mugnai, C

2014-09-20

In order to improve sediment handling following dredging operations, this study aims to statistically derive ranges of distribution for certain microbiological parameters, according to four environmental types inspired by Italian legislation on seaports: ports of international/national importance, ports of regional importance, port channels in brackish environments, and marine coastal areas. A national database was developed using microbiological data from technical reports available at the Italian Ministry of Environment and National Institute of Environmental Protection and Research (ISPRA) for the period 1990-2008. The parameters considered were total coliform bacteria, faecal coliform bacteria, Escherichia coli, enterococci, sulfite-reducing clostridia (SRC), total bacterial counts at 22 °C and at 37 °C, and fungi. The data were statistically analyzed: (1) to verify the correspondence with the identified environmental types and rank them according to the concentration gradient and (2) to describe the data distribution in order to obtain reference ranges typical for each parameter/environmental type. The four environmental types considered were clearly different for enterococci, SRC, and fungi, highlighting a correspondence with Italian legislation. For the remaining parameters, at least two environmental types were merged. In general, the less contaminated environments were small ports and relatively unimpacted coastal areas. The ranges defined for relatively clean coastal areas can be considered a target for other areas both from an environmental point of view and for the sediment management implications. These values could be used as a comparison in environmental surveys addressing marine or brackish sediment handling and may represent a future line of evidence for the assessment of overall sediment quality.

Deep Subseafloor Fungi as an Untapped Reservoir of Amphipathic Antimicrobial Compounds.

PubMed

Navarri, Marion; Jégou, Camille; Meslet-Cladière, Laurence; Brillet, Benjamin; Barbier, Georges; Burgaud, Gaëtan; Fleury, Yannick

2016-03-10

The evolving global threat of antimicrobial resistance requires a deep renewal of the antibiotic arsenal including the isolation and characterization of new drugs. Underexplored marine ecosystems may represent an untapped reservoir of novel bioactive molecules. Deep-sea fungi isolated from a record-depth sediment core of almost 2000 m below the seafloor were investigated for antimicrobial activities. This antimicrobial screening, using 16 microbial targets, revealed 33% of filamentous fungi synthesizing bioactive compounds with activities against pathogenic bacteria and fungi. Interestingly, occurrence of antimicrobial producing isolates was well correlated with the complexity of the habitat (in term of microbial richness), as higher antimicrobial activities were obtained at specific layers of the sediment core. It clearly highlights complex deep-sea habitats as chemical battlefields where synthesis of numerous bioactive compounds appears critical for microbial competition. The six most promising deep subseafloor fungal isolates were selected for the production and extraction of bioactive compounds. Depending on the fungal isolates, antimicrobial compounds were only biosynthesized in semi-liquid or solid-state conditions as no antimicrobial activities were ever detected using liquid fermentation. An exception was made for one fungal isolate, and the extraction procedure designed to extract amphipathic compounds was successful and highlighted the amphiphilic profile of the bioactive metabolites.

Radiological responses of different types of Egyptian Mediterranean coastal sediments

NASA Astrophysics Data System (ADS)

El-Gamal, A.; Rashad, M.; Ghatass, Z.

2010-08-01

The aim of this study was to identify gamma self-absorption correction factors for different types of Egyptian Mediterranean coastal sediments. Self-absorption corrections based on direct transmission through different thicknesses of the most dominant sediment species have been tested against point sources with gamma-ray energies of 241Am, 137Cs and 60Co with 2% uncertainties. Black sand samples from the Rashid branch of the Nile River quantitatively absorbed the low energy of 241Am through a thickness of 5 cm. In decreasing order of gamma energy self-absorption of 241Am, the samples under investigation ranked black sand, Matrouh sand, Sidi Gaber sand, shells, Salloum sand, and clay. Empirical self-absorption correction formulas were also deduced. Chemical analyses such as pH, CaCO 3, total dissolved solids, Ca 2+, Mg 2+, CO 32-, HCO 3- and total Fe 2+ have been carried out for the sediments. The relationships between self absorption corrections and the other chemical parameters of the sediments were also examined.

Recent Monitoring of Suspended Sediment Patterns along Louisiana's Coastal Zone using ER-2 based MAS Data and Terra Based MODIS Data

NASA Technical Reports Server (NTRS)

Moeller, Christopher C.; Gunshor, M. M.; Menzel, W. P.; Huh, O. K.; Walker, N. D.; Rouse, L. J.

2001-01-01

The University nf Wisconsin and Louisiana State University have teamed to study the forcing of winter season cold frontal wind systems on sediment distribution patterns and geomorphology in the Louisiana coastal zone. Wind systems associated with cold fronts have been shown to model coastal circulation and resuspend sediments along the micro tidal Louisiana coast (Roberts et at. 1987, Moeller et al. 1993). Remote sensing data is being used to map and track sediment distribution patterns for various wind conditions. Suspended sediment is a building material for coastal progradation and wetlands renewal, but also restricts access to marine nursery environments and impacts oyster bed health. Transferring a suspended sediment concentration (SSC) algorithm to EOS MODerate resolution Imaging Spectroradiometer (MODIS; Barnes et al. 1998) observations may enable estimates of SSC globally.

SEDIMENTATION IN PACIFIC NORTHWEST COASTAL STREAMS -- EVIDENCE FROM REGIONAL SURVEY OF BED SUBSTRATE SIZE AND STABILITY

EPA Science Inventory

Excessive erosion, transport and deposition of sediment are major problems in streams and rivers throughout the United States. We examined evidence of anthropogenic sedimentation in Oregon and Washington coastal streams using relatively rapid measurements taken from surveys duri...

Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments: Alginolytic guilds from cold sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matos, Marina N.; Lozada, Mariana; Anselmino, Luciano E.

Alginates are abundant polysaccharides in brown algae that constitute an important energy source for marine heterotrophic bacteria. Despite the key role of alginate assimilation processes in the marine carbon cycle, little information is available on the bacterial populations involved in these processes. The goal of this work was to gain insight into the structure and functional traits of the alginolytic communities from sediments of cold coastal environments. Sediment metagenomes from high-latitude regions of both Hemispheres were interrogated for alginate lyase gene homolog sequences and their genomic context. Sediments contained highly abundant and diverse bacterial assemblages with alginolytic potential, including membersmore » of Bacteroidetes and Proteobacteria, as well as several poorly characterized taxa. Temperature and salinity were correlated to the variation in community structure. The microbial communities in Arctic and Antarctic sediments exhibited the most similar alginolytic profiles, whereas brackish sediments had a higher proportion of novel members. Examination of the gene context of the alginate lyase homologs revealed distinct patterns according to the phylogenetic origin of the scaffolds, with evidence of evolutionary relationships among lineages. This information is relevant for understanding carbon fluxes in cold coastal environments and provides valuable information for the development of biotechnological applications from brown algae biomass.« less

SEDIMENT CHEMICAL CONTAMINATION AND TOXICITY ASSOCIATED WITH A COASTAL GOLF COURSE COMPLEX.

EPA Science Inventory

The increasing density of golf courses represents a potential source of sediment contamination to nearby coastal areas, the chemical and biological magnitude of which is almost unknown. The objective of this study was to determine the concentrations of contaminants and toxicities...

Quantifying the dilution of the radiocesium contamination in Fukushima coastal river sediment (2011-2015)

NASA Astrophysics Data System (ADS)

Evrard, Olivier; Laceby, J. Patrick; Onda, Yuichi; Wakiyama, Yoshifumi; Jaegler, Hugo; Lefèvre, Irène

2016-10-01

Fallout from the Fukushima Dai-ichi nuclear power plant accident resulted in a 3000-km2 radioactive contamination plume. Here, we model the progressive dilution of the radiocesium contamination in 327 sediment samples from two neighboring catchments with different timing of soil decontamination. Overall, we demonstrate that there has been a ~90% decrease of the contribution of upstream contaminated soils to sediment transiting the coastal plains between 2012 (median - M - contribution of 73%, mean absolute deviation - MAD - of 27%) and 2015 (M 9%, MAD 6%). The occurrence of typhoons and the progress of decontamination in different tributaries of the Niida River resulted in temporary increases in local contamination. However, the much lower contribution of upstream contaminated soils to coastal plain sediment in November 2015 demonstrates that the source of the easily erodible, contaminated material has potentially been removed by decontamination, diluted by subsoils, or eroded and transported to the Pacific Ocean.

Effects of Urechis unicinctus juveniles on chemical characteristics of organically contaminated coastal sediment

NASA Astrophysics Data System (ADS)

Kang, Kyoung Ho; Zhang, Zhifeng; Kim, Jae Min; Seon, Seung Chun; Shao, Mingyu

2010-03-01

Biological activities of marine benthos such as burrowing and feeding may change sediment characteristics. We conducted three experiments to examine the potential of using juveniles of a spoon worm Urechis unicinctus to improve the quality of organically contaminated coastal sediment. Sediment samples were collected from a site that was heavily contaminated with organic matter (Seonso) and two sites that were clean (Myo-do, Dolsan-do). Urechis juveniles, obtained by artificial fertilization and cultured in the laboratory, were introduced to the sediment (weight 3 kg, depth 10 cm) at a density of 500 individuals per aquarium (length 50 cm, width 35 cm, height 30 cm) (Experiment 1), or at densities ranging from 100 to 900 individuals per beaker (Experiment 2). To examine how sediment contamination can be modified by the effects of Urechis, 500 individuals (per aquarium) were exposed to the Seonso contaminated sediment that had been mixed with 0-100% clean sand (Experiment 3). Each experiment lasted two months and sediment samples were collected every 15 d to determine the several indexes of sediment quality, which included acid volatile sulfide (AVS), chemical oxygen demand (COD) and total ignition loss (TIL). In Experiment 1, the existence of Urechis did not result in significant changes in quality indexes in the sediments collected from Myo-do, Dolsan-do. However, AVS, COD and TIL of the Seonso sediment all decreased significantly after co-incubation with Urechis juveniles for 30 to 45 d. Experiment 2 showed that a density of at least 300 juveniles per beaker was necessary to significantly reduce all three quality indexes, and the magnitude of reduction was positively correlated with juvenile density. Experiment 3 revealed that Urechis juveniles were effective in reducing the AVS, COD and TIL of the Seonso sediment that had been mixed with 60%, 80%, and 80% of clean sand, respectively. The results of the present study therefore indicated that juveniles of this

Spatial and Temporal Variability in Sediment P Distribution and Speciation in Coastal Louisiana

NASA Astrophysics Data System (ADS)

Bowes, K.; White, J. R.; Maiti, K.

2017-12-01

Excess loading of phosphorus (P) and nitrogen (N) into aquatic systems leads to degradation of water quality and diminished important ecosystem services. In the Northern Gulf of Mexico (NGOM), excess P and N loading has led to a seasonally present hypoxic area with less than 2 mg/L O2 in bottom waters, approximating 26,000 km2 in 2017. A sequential extraction (SEDEX) method was performed on surficial sediments from five different coastal and shelf sites as a function of distance from the Mississippi River mouth in the NGOM. To better quantify temporal variability in P distribution and speciation, samples were collected during both low (August) and high (May) river flow regimes. Sequential extraction techniques have been successful in separating pools of P into exchangeable or loosely sorbed P, Fe-P, Authigenic-P, Detrital-P, and Organic-P. Preliminary results suggest Authigenic-P is approximately 3-6 times more concentrated in NGOM sediments than all other P pools. Fractionation results did not show a consistent trend with sediment depth. Sediment samples had an average moisture content of 58.72% ± 12.06% and an average bulk density of 0.582 ± 0.275 g/cm3. Continued analysis of P speciation and cycling in NGOM sediments is critical in understanding the driving force behind coastal eutrophication and informing effective nutrient management strategies.

Are styrene oligomers in coastal sediments of an industrial area aryl hydrocarbon-receptor agonists?

PubMed

Hong, Seongjin; Lee, Junghyun; Lee, Changkeun; Yoon, Seo Joon; Jeon, Seungyeon; Kwon, Bong-Oh; Lee, Jong-Hyeon; Giesy, John P; Khim, Jong Seong

2016-06-01

Effect-directed analysis (EDA) was performed to identify the major aryl hydrocarbon receptor (AhR) agonists in sediments collected from a highly industrialized area (Lake Shihwa, Korea). Great AhR-mediated potencies were found in fractions containing aromatic compounds with log Kow values of 5-8, and relatively great concentrations of styrene oligomers (SOs) and polycyclic aromatic hydrocarbons (PAHs) were detected in those fractions. Until now, there was little information on occurrences and toxic relative potencies (RePs) of SOs in coastal environments. In the present study; i) distributions and compositions, ii) AhR binding affinities, and iii) contributions of SOs to total AhR-mediated potencies were determined in coastal sediments. Elevated concentrations of 10 SOs were detected in sediments of inland creeks ranging from 61 to 740 ng g(-1) dry mass (dm), while lesser concentrations were found in inner (mean = 33 ng g(-1) dm) and outer regions (mean = 25 ng g(-1) dm) of the lake. Concentrations of PAHs in sediments were comparable to those of SOs. 2,4-diphenyl-1-butene (SD3) was the predominant SO analogue in sediments. SOs and PAHs were accumulated in sediments near sources, and could not be transported to remote regions due to their hydrophobicity. RePs of 3 SOs could be derived, which were 1000- to 10,000-fold less than that of one representative potent AhR active PAH, benzo[a]pyrene. Although concentrations of SOs in sediments were comparable to those of PAHs, the collective contribution of SOs to total AhR-mediated potencies were rather small (<1%), primarily due to their smaller RePs. Overall, the present study provides information on distributions and AhR binding affinities for SOs as baseline data for degradation products of polystyrene plastic in the coastal environment. Copyright © 2016 Elsevier Ltd. All rights reserved.

Linking the historic 2011 Mississippi River flood to coastal wetland sedimentation

USGS Publications Warehouse

Falcini, Federico; Khan, Nicole S.; Macelloni, Leonardo; Horton, Benjamin P.; Lutken, Carol B.; McKee, Karen L.; Santoleri, Rosalia; Colella, Simone; Li, Chunyan; Volpe, Gianluca; D’Emidio, Marco; Salusti, Alessandro; Jerolmack, Douglas J.

2012-01-01

Wetlands in the Mississippi River deltaic plain are deteriorating in part because levees and control structures starve them of sediment. In Spring of 2011 a record-breaking flood brought discharge on the lower Mississippi River to dangerous levels, forcing managers to divert up to 3500 m3/s-1 of water to the Atchafalaya River Basin. Here we quantify differences between the Mississippi and Atchafalaya River inundation and sediment-plume patterns using field-calibrated satellite data, and assess the impact these outflows had on wetland sedimentation. We characterize hydrodynamics and suspended sediment patterns of the Mississippi River plume using in-situ data collected during the historic flood. We show that the focused, high-momentum jet from the leveed Mississippi delivered sediment far offshore. In contrast, the plume from the Atchafalaya was more diffuse; diverted water inundated a large area; and sediment was trapped within the coastal current. Maximum sedimentation (up to several centimetres) occurred in the Atchafalaya Basin despite the larger sediment load carried by the Mississippi. Minimum accumulation occurred along the shoreline between these river sources. Our findings provide a mechanistic link between river-mouth dynamics and wetland sedimentation patterns that is relevant for plans to restore deltaic wetlands using artificial diversions.

Hydrocarbon contamination of coastal sediments from the Sfax area (Tunisia), Mediterranean Sea.

PubMed

Louati, A; Elleuch, B; Kallel, M; Saliot, A; Dagaut, J; Oudot, J

2001-06-01

The coastal area off the city of Sfax (730,000 inhabitants), well-known for fisheries and industrial activities, receives high inputs of organic matter mostly anthropogenic. Eighteen stations were selected in the vicinity of the direct discharge of industrial sewage effluents in the sea in order to study the spatial distribution of the organic contamination. Surface sediments sampled in the shallow shelf were analysed for hydrocarbons by Fourier transform infrared spectroscopy, gas chromatography and gas chromatography/mass spectrometry. Total hydrocarbon distributions revealed high contamination as compared to other coastal Mediterranean sites, with an average concentration of 1865 ppm/dry weight sediment. Gas chromatographic distribution patterns, values of unresolved mixture/n-alkane ratio and distributions of steranes and hopanes confirmed a petroleum contamination of the Arabian light crude oil type. Biogenic compounds were also identified with a series of short-chain carbon-numbered n-alkenes in the carbon range 16-24.

Distribution of trace elements in the coastal sea sediments of Maslinica Bay, Croatia

NASA Astrophysics Data System (ADS)

Mikulic, Nenad; Orescanin, Visnja; Elez, Loris; Pavicic, Ljiljana; Pezelj, Durdica; Lovrencic, Ivanka; Lulic, Stipe

2008-02-01

Spatial distributions of trace elements in the coastal sea sediments and water of Maslinica Bay (Southern Adriatic), Croatia and possible changes in marine flora and foraminifera communities due to pollution were investigated. Macro, micro and trace elements’ distributions in five granulometric fractions were determined for each sediment sample. Bulk sediment samples were also subjected to leaching tests. Elemental concentrations in sediments, sediment extracts and seawater were measured by source excited energy dispersive X-ray fluorescence (EDXRF). Concentrations of the elements Cr, Cu, Zn, and Pb in bulk sediment samples taken in the Maslinica Bay were from 2.1 to over six times enriched when compared with the background level determined for coarse grained carbonate sediments. A low degree of trace elements leaching determined for bulk sediments pointed to strong bonding of trace elements to sediment mineral phases. The analyses of marine flora pointed to higher eutrophication, which disturbs the balance between communities and natural habitats.

Controls of Sediment Nitrogen Dynamics in Tropical Coastal Lagoons

PubMed Central

Enrich-Prast, Alex; Figueiredo, Viviane; Esteves, Francisco de Assis; Nielsen, Lars Peter

2016-01-01

Sediment denitrification rates seem to be lower in tropical environments than in temperate environments. Using the isotope pairing technique, we measured actual denitrification rates in the sediment of tropical coastal lagoons. To explain the low denitrification rates observed at all study sites (<5 μmol N2 m-2 h-1), we also evaluated potential oxygen (O2) consumption, potential nitrification, potential denitrification, potential anammox, and estimated dissimilatory nitrate (NO3-) reduction to ammonium (NH4+; DNRA) in the sediment. 15NO3- and 15NH4+ conversion was measured in oxic and anoxic slurries from the sediment surface. Sediment potential O2 consumption was used as a proxy for overall mineralization activity. Actual denitrification rates and different potential nitrogen (N) oxidation and reduction processes were significantly correlated with potential O2 consumption. The contribution of potential nitrification to total O2 consumption decreased from contributing 9% at sites with the lowest sediment mineralization rates to less than 0.1% at sites with the highest rates. NO3- reduction switched completely from potential denitrification to estimated DNRA. Ammonium oxidation and nitrite (NO2-) reduction by potential anammox contributed up to 3% in sediments with the lowest sediment mineralization rates. The majority of these patterns could be explained by variations in the microbial environments from stable and largely oxic conditions at low sediment mineralization sites to more variable conditions and the prevalences of anaerobic microorganisms at high sediment mineralization sites. Furthermore, the presence of algal and microbial mats on the sediment had a significant effect on all studied processes. We propose a theoretical model based on low and high sediment mineralization rates to explain the growth, activity, and distribution of microorganisms carrying out denitrification and DNRA in sediments that can explain the dominance or coexistence of DNRA and

Controls of Sediment Nitrogen Dynamics in Tropical Coastal Lagoons.

PubMed

Enrich-Prast, Alex; Figueiredo, Viviane; Esteves, Francisco de Assis; Nielsen, Lars Peter

2016-01-01

Sediment denitrification rates seem to be lower in tropical environments than in temperate environments. Using the isotope pairing technique, we measured actual denitrification rates in the sediment of tropical coastal lagoons. To explain the low denitrification rates observed at all study sites (<5 μmol N2 m-2 h-1), we also evaluated potential oxygen (O2) consumption, potential nitrification, potential denitrification, potential anammox, and estimated dissimilatory nitrate (NO3-) reduction to ammonium (NH4+; DNRA) in the sediment. 15NO3- and 15NH4+ conversion was measured in oxic and anoxic slurries from the sediment surface. Sediment potential O2 consumption was used as a proxy for overall mineralization activity. Actual denitrification rates and different potential nitrogen (N) oxidation and reduction processes were significantly correlated with potential O2 consumption. The contribution of potential nitrification to total O2 consumption decreased from contributing 9% at sites with the lowest sediment mineralization rates to less than 0.1% at sites with the highest rates. NO3- reduction switched completely from potential denitrification to estimated DNRA. Ammonium oxidation and nitrite (NO2-) reduction by potential anammox contributed up to 3% in sediments with the lowest sediment mineralization rates. The majority of these patterns could be explained by variations in the microbial environments from stable and largely oxic conditions at low sediment mineralization sites to more variable conditions and the prevalences of anaerobic microorganisms at high sediment mineralization sites. Furthermore, the presence of algal and microbial mats on the sediment had a significant effect on all studied processes. We propose a theoretical model based on low and high sediment mineralization rates to explain the growth, activity, and distribution of microorganisms carrying out denitrification and DNRA in sediments that can explain the dominance or coexistence of DNRA and

Investigations into the differential reactivity of endogenous and exogenous mercury species in coastal sediments.

PubMed

Bouchet, S; Rodriguez-Gonzalez, P; Bridou, R; Monperrus, M; Tessier, E; Anschutz, P; Guyoneaud, R; Amouroux, D

2013-03-01

Stable isotopic tracer methodologies now allow the evaluation of the reactivity of the endogenous (ambient) and exogenous (added) Hg to further predict the potential effect of Hg inputs in ecosystems. The differential reactivity of endogenous and exogenous Hg was compared in superficial sediments collected in a coastal lagoon (Arcachon Bay) and in an estuary (Adour River) from the Bay of Biscay (SW France). All Hg species (gaseous, aqueous, and solid fraction) and ancillary data were measured during time course slurry experiments under variable redox conditions. The average endogenous methylation yield was higher in the estuarine (1.2 %) than in the lagoonal sediment (0.5 %), although both methylation and demethylation rates were higher in the lagoonal sediment in relation with a higher sulfate-reducing activity. Demethylation was overall more consistent than methylation in both sediments. The endogenous and exogenous Hg behaviors were always correlated but the exogenous inorganic Hg (IHg) partitioning into water was 2.0-4.3 times higher than the endogenous one. Its methylation was just slightly higher (1.4) in the estuarine sediment while the difference in the lagoonal sediment was much larger (3.6). The relative endogenous and exogenous methylation yields were not correlated to IHg partitioning, demonstrating that the bioavailable species distributions were different for the two IHg pools. In both sediments, the exogenous IHg partitioning equaled the endogenous one within a week, while its higher methylation lasted for months. Such results provide an original assessment approach to compare coastal sediment response to Hg inputs.

Coastal sediment dynamics: Introduction to the thematic issue

NASA Astrophysics Data System (ADS)

Weill, Pierre; Tessier, Bernadette

2016-07-01

This thematic issue of Comptes rendus Geoscience gives an overview of the works presented in the frame of a session dedicated to "Coastal sediment dynamics" at the 14th Congress of the French Association of Sedimentologists, held in Paris, France, from 5 to 7 November 2013. In total, 23 papers were presented in this session, both in the form of oral communications and posters. This national conference is traditionally a gateway for PhD and Master students to share their first results and sharpen their oral skills in front of an audience of specialists.

Deconvolving the Fate of Carbon in Coastal Sediments

NASA Astrophysics Data System (ADS)

Van der Voort, Tessa S.; Mannu, Utsav; Blattmann, Thomas M.; Bao, Rui; Zhao, Meixun; Eglinton, Timothy I.

2018-05-01

Coastal oceans play a crucial role in the global carbon cycle, and are increasingly affected by anthropogenic forcing. Understanding carbon cycling in coastal environments is hindered by convoluted sources and myriad processes that vary over a range of spatial and temporal scales. In this study, we deconvolve the complex mosaic of organic carbon manifested in Chinese Marginal Sea (CMS) sediments using a novel numerical clustering algorithm based on 14C and total OC content. Results reveal five regions that encompass geographically distinct depositional settings. Complementary statistical analyses reveal contrasting region-dependent controls on carbon dynamics and composition. Overall, clustering is shown to be highly effective in demarcating areas of distinct organic facies by disentangling intertwined organic geochemical patterns resulting from superimposed effects of OC provenance, reworking and deposition on a shelf region exhibiting pronounced spatial heterogeneity. This information will aid in constraining region-specific budgets of carbon burial and carbon cycle processes.

Coastal change from a massive sediment input: Dam removal, Elwha River, Washington, USA

USGS Publications Warehouse

Warrick, Jonathan A.; Gelfenbaum, Guy R.; Stevens, Andrew; Miller, Ian M.; Kaminsky, George M.; Foley, Melissa M.

2015-01-01

The removal of two large dams on the Elwha River, Washington, provides an ideal opportunity to study coastal morphodynamics during increased sediment supply. The dam removal project exposed ~21 million cubic meters (~30 million tonnes) of sediment in the former reservoirs, and this sediment was allowed to erode by natural river processes. Elevated rates of sand and gravel sediment transport in the river occurred during dam removal. Most of the sediment was transported to the coast, and this renewed sediment supply resulted in hundreds of meters of seaward expansion of the river delta since 2011. Our most recent survey in January 2015 revealed that a cumulative ~3.5 million m3 of sediment deposition occurred at the delta since the beginning of the dam removal project, and that aggradation had exceeded 8 m near the river mouth. Some of the newly deposited sediment has been shaped by waves and currents into a series of subaerial berms that appear to move shoreward with time.

Including granulometric sediment coastal data composition into the Black Sea GIS

NASA Astrophysics Data System (ADS)

Zhuk, Elena; Khaliulin, Alexey; Krylenko, Marina; Krylenko, Viacheslav; Zodiatis, George; Nikolaidis, Marios; Nikolaidis, Andreas

2017-09-01

The module structure of the Black Sea GIS allows the increasing of its functionality, including new data types and defining new procedures accessing them, their visualization and integration with existing data by their conjoint processing and representation. The Black Sea GIS is released as free software; Mapserver is used as a mapping service; MySQL DBMS works with relational data. A new additional feature provided, is the ability of including coastal data obtained in SB SIO RAS. The data represent granulometric composition of the Anapa bay-bar sediments. The Anapa bay-bar is an accumulative sand form (about 50 km long) located on the northwest Russian Black Sea coast. The entire bay-bar and especially its southern part with sand beaches 50-200 m wide is intensively used in recreation. This work is based on the results of field studies of 2010-2014 in the southern part of the Anapa bay-bar researched by scientists of the Shirshov Institute of Oceanology RAS. Since the shore under consideration has no clearly pronounced reference points, "virtual" points located within 1 km distance from each other were selected. Transversal profiles cross these points. The granulometric composition was studied along with 45 profiles. The samples taken in every profile were from the most characteristic morphological parts of the beach. In this study we used shoreline zone samples. Twenty one granule fractions (mm) were separated in the laboratory. The module which processes coastal data allows to select coastal data based on territory/region and granulometric sediment composition. Also, it allows to visualize coastal maps with user-selected features combined with other GIS data.

Heavy metal contamination of coastal lagoon sediments: Fongafale Islet, Funafuti Atoll, Tuvalu.

PubMed

Fujita, Masafumi; Ide, Yoichi; Sato, Daisaku; Kench, Paul S; Kuwahara, Yuji; Yokoki, Hiromune; Kayanne, Hajime

2014-01-01

To evaluate contamination of coastal sediments along Fongafale Islet, Central Pacific, a field survey was conducted in densely populated, sparsely populated, open dumping and undisturbed natural areas. Current measurements in shallow water of the lagoon indicated that contaminants from the densely populated area would only be transported for a small proportion of a tidal cycle. Acid-volatile sulfides were detected in both the intertidal beach and nearshore zones of the densely populated area, whereas these were no detection in the other areas. This observation lends support to argument that the coastal pollution mechanism that during ebb tide, domestic wastewater leaking from poorly constructed sanitary facilities seeps into the coast. The total concentrations of Cr, Mn, Ni, Cu, Zn, Cd and Pb were relatively high in all of the areas except the undisturbed natural area. The indices of contamination factor, pollution load index and geoaccumulation index were indicative of heavy metal pollution in the three areas. The densely populated area has the most significant contamination; domestic wastewater led to significant contamination of coastal sediments with Cr, Zn, Cu, Pb and Cd. The open dumping area is noteworthy with respect to Mn and Ni, which can be derived from disposed batteries. Crown Copyright © 2013. Published by Elsevier Ltd. All rights reserved.

Antibiotics in water and sediments of rivers and coastal area of Zhuhai City, Pearl River estuary, south China.

PubMed

Li, Si; Shi, Wanzi; Li, Huimin; Xu, Nan; Zhang, Ruijie; Chen, Xuejiao; Sun, Weiling; Wen, Donghui; He, Shanliang; Pan, Jianguo; He, Zhidong; Fan, Yingying

2018-09-15

The occurrence, spatiotemporal distribution and ecological risks of 27 antibiotics in water and sediments from rivers and coastal area of Zhuhai, Pearl River estuary, south China were investigated. Higher concentrations of antibiotics were found in river water in dry season than those in wet season (p < 0.01), especially for quinolones (QNs) (6.36-463 ng/L) and aminoglycosides (AGs) (94.9-458 ng/L). In coastal water samples, the concentrations of antibiotics were up to 419 ng/L and 357 ng/L in dry season and wet season, respectively. Higher concentrations of antibiotics in coastal sediment samples were observed in wet season compared with those in dry season (p < 0.01). This may be ascribed to the greater discharge of antibiotics from mariculture and surface sediment flushing in wet season, leading to the accumulation of polluted sediments in the estuary. Redundancy analysis showed that the concentrations of antibiotics in water were correlated with biological/chemical oxygen demand, ammonia nitrogen, and/or total nitrogen (TN). In addition, sediment organic matter (SOC) and TN strongly affected the distribution of antibiotics in sediments. Ecological risk assessment based on risk quotients (RQs) indicated that most antibiotics in water samples posed insignificant risk to fish and green algae, and insignificant to medium risk to daphnid. Copyright © 2018 Elsevier B.V. All rights reserved.

Preliminary observations on coastal sediment loss through ice rafting in Lake Michigan

USGS Publications Warehouse

Reimnitz, E.; Hayden, E.; McCormick, M.; Barnes, P.W.

1991-01-01

Shows that ice rafting of sand is an important mechanism influencing processes of coastal erosion and basin-deposition. Ice rafting may be partly responsible for net sediment progradation at this southeastern, lee shore during the last few thousand years, and adds coarse grains to basin muds. -from Authors

Comparison of heavy metal contamination during the last decade along the coastal sediment of Pakistan: Multiple pollution indices approach.

PubMed

Saher, Noor Us; Siddiqui, Asmat Saleem

2016-04-15

Heavy metals concentrations (Fe, Cu, Zn, Ni, Cr, Co, Pb, and Cd) were scrutinized during two monitoring years (2001 and 2011) in the coastal sediment of Pakistan. The status of metal contamination in coastal sediment was interpreted using sediment quality guidelines, and single and combined metal pollution indices. Ni, Cr, and Cd were recognized for their significant (p<0.05) intensification in the sediment during the last decade. Sediment quality guidelines recognized the frequent adverse biological effect of Ni and the occasional adverse biological effect of Cu, Cr, Pb and Cd. Single metal pollution indices (Igeo, EF, CF, and ER) revealed that sediment pollution is predominantly caused by Pb and Cd. Low to moderate contamination was appraised along the coast by multi-metal pollution indices (CD and PERI). Correlation study specifies that heavy metals were presented diverse affiliations and carriers for distribution in the sediment during the last decade. Copyright © 2016 Elsevier Ltd. All rights reserved.

Bacterial Community Composition of South China Sea Sediments through Pyrosequencing-Based Analysis of 16S rRNA Genes

PubMed Central

Zhu, Daochen; Tanabe, Shoko-Hosoi; Yang, Chong; Zhang, Weimin; Sun, Jianzhong

2013-01-01

Background Subseafloor sediments accumulate large amounts of organic and inorganic materials that contain a highly diverse microbial ecosystem. The aim of this study was to survey the bacterial community of subseafloor sediments from the South China Sea. Methodology/Principal Findings Pyrosequencing of over 265,000 amplicons of the V3 hypervariable region of the 16S ribosomal RNA gene was performed on 16 sediment samples collected from multiple locations in the northern region of the South China Sea from depths ranging from 35 to 4000 m. A total of 9,726 operational taxonomic units (OTUs; between 695 and 2819 unique OTUs per sample) at 97% sequence similarity level were generated. In total, 40 bacterial phyla including 22 formally described phyla and 18 candidate phyla, with Proteobacteria, Firmicutes, Planctomycetes, Actinobacteria and Chloroflexi being most diverse, were identified. The most abundant phylotype, accounting for 42.6% of all sequences, belonged to Gammaproteobacteria, which possessed absolute predominance in the samples analyzed. Among the 18 candidate phyla, 12 were found for the first time in the South China Sea. Conclusions This study provided a novel insight into the composition of bacterial communities of the South China Sea subseafloor. Furthermore, abundances and community similarity analysis showed that the compositions of the bacterial communities are very similar at phylum level at different depths from 35-4000 m. PMID:24205246

Bacterial community composition of South China Sea sediments through pyrosequencing-based analysis of 16S rRNA genes.

PubMed

Zhu, Daochen; Tanabe, Shoko-Hosoi; Yang, Chong; Zhang, Weimin; Sun, Jianzhong

2013-01-01

Subseafloor sediments accumulate large amounts of organic and inorganic materials that contain a highly diverse microbial ecosystem. The aim of this study was to survey the bacterial community of subseafloor sediments from the South China Sea. Pyrosequencing of over 265,000 amplicons of the V3 hypervariable region of the 16S ribosomal RNA gene was performed on 16 sediment samples collected from multiple locations in the northern region of the South China Sea from depths ranging from 35 to 4000 m. A total of 9,726 operational taxonomic units (OTUs; between 695 and 2819 unique OTUs per sample) at 97% sequence similarity level were generated. In total, 40 bacterial phyla including 22 formally described phyla and 18 candidate phyla, with Proteobacteria, Firmicutes, Planctomycetes, Actinobacteria and Chloroflexi being most diverse, were identified. The most abundant phylotype, accounting for 42.6% of all sequences, belonged to Gammaproteobacteria, which possessed absolute predominance in the samples analyzed. Among the 18 candidate phyla, 12 were found for the first time in the South China Sea. This study provided a novel insight into the composition of bacterial communities of the South China Sea subseafloor. Furthermore, abundances and community similarity analysis showed that the compositions of the bacterial communities are very similar at phylum level at different depths from 35-4000 m.

Microbial processes and organic priority substances in marine coastal sediments (Adriatic Sea, Italy)

NASA Astrophysics Data System (ADS)

Zoppini, Annamaria; Ademollo, Nicoletta; Amalfitano, Stefano; Dellisanti, Walter; Lungarini, Silvia; Miserocchi, Stefano; Patrolecco, Luisa; Langone, Leonardo

2015-04-01

PERSEUS EU FP7 Project aims to identify the interacting patterns of natural and human-derived pressures to assess their impact on marine ecosystems and, using the objectives and principles of the Marine Strategy Framework Directive (MSFD) as a vehicle, to design an effective and innovative research governance framework based on sound scientific knowledge. In the frame of this Project (subtask 1.3.3 ADREX: Adriatic and Ionian Seas Experiment), monitoring surveys were conducted in the Adriatic Sea (Italy) in order to study the variation of structural and functional characteristics of native bacterial communities and the occurrence of selected classes of organic priority substances in sediments. The study area represents a good natural laboratory sensitive to climate variability and human pressure, owing to the semi-enclosed nature of the Adriatic Sea and to the increasing trend of human activities in the coastal regions. During the cruise ADRI-13 (November 2013) and ADRI-14 (October 2014) we sampled several coastal sites from the mouth of the Po River to the Otranto strait. Surface sediments were collected in all areas, while sediment cores were sampled in selected sites. Microbes associated with marine sediments play an important role in the C-flux being responsible for the transformation of organic detritus (autochthonous and allochthonous) into biomass. The sediment bacterial abundance was determined by epifluorescence microscopy and the rate of bacterial carbon production by measuring the 3H-leucine uptake rates. The community respiration rate was estimated by the measurement of the electron transport system (ETS) activity. The sediment contamination level was determined by measuring the concentration of contaminants included in the list of organic priority substances: PAHs, bisphenol A (BPA), alkylphenols (APs). The extraction/clean-up of PAHs, BPA and APs was performed by ultrasonic bath with the appropriate solvents, followed by analytical determination with

210Pb, 137Cs and 7Be in the sediments of coastal lakes on the polish coast: Implications for sedimentary processes.

PubMed

Woszczyk, Michał; Poręba, Grzegorz; Malinowski, Łukasz

2017-04-01

In this study we combined radioisotopes ( 210 Pb, 137 Cs and 7 Be) and hydrodynamic modeling to investigate sedimentary processes in three coastal lakes on the Polish Baltic coast. The research aimed at establishing the depth of sediment mixing and its effects on sediment geochemistry as well as showing the relationship between lake water salinity and radionuclide distribution in the sediment cores. We established that the intensity of mixing displayed appreciable variability throughout the lakes and the thickness of sediment mixing layer was between <2 and 22 cm. The mixing was primarily due to wind-induced waves. The vertical mixing was shown to shift sulfidation of the sediments towards deeper layers. We found that the distributions of radioisotopes, 137 Cs in particular, in the sediment cores from coastal lakes were strongly affected by the early diagenetic processes, which caused diffusive migration of radionuclides. The inventories of 210 Pb ex and 137 Cs in the lakes were positively related to salinity. The high inventories of both isotopes (3.2-10.9 kBq ·m -2 for 210 Pb ex and 3.0-6.0 kBq·m -2 for 137 Cs) in coastal lakes were explained by enhanced sedimentation within estuarine mixing zone and delivery of "additional" 210 Pb and 137 Cs to the lakes during saltwater ingressions. The results of this study have implications for the paleolimnology, sedimentology and biogeochemistry of coastal lakes. Copyright © 2017 Elsevier Ltd. All rights reserved.

Coastal circulation and sediment dynamics in Hanalei Bay, Kaua'i, Hawaii, part III, studies of sediment toxicity

USGS Publications Warehouse

Carr, Robert S.; Nipper, Marion; Field, Michael; Biedenbach, James M.

2006-01-01

Toxicity tests are commonly conducted as a measure of the bioavailability of toxic chemicals to biota in an environment. Chemical analyses alone are insufficient to determine whether contaminants pose a threat to biota. Porewater toxicity tests are extremely sensitive to a broad range of contaminants in marine environments and provide ecologically relevant data on sensitive life stages. The inclusion of porewater toxicity testing as an additional indicator of sediment quality provides a more comprehensive picture of contaminant effects in these sensitive habitats. In this study purple-spined sea urchin (Arbacia punctulata) fertilization and embryological development porewater toxicity tests were used to evaluate the sediments collected from the coastal environment around Hanalei Bay, Kaua’i, Hawaii. These tests have been used previously to assess the bioavailability of contaminants associated with sediments in the vicinity of coral reefs.

Distribution and enrichment of heavy metals in Sabratha coastal sediments, Mediterranean Sea, Libya

NASA Astrophysics Data System (ADS)

Nour, Hamdy E.; El-Sorogy, Abdelbaset S.

2017-10-01

In order to assess heavy metal pollutants in Sabratha coastal sediments, Mediterranean Sea, Libya, 30 sediment samples were collected for Fe, Cu, Pb, Mn, Cd, Co, Ni and Zn analysis using Atomic Absorption Spectrometry. The analysis indicated that, the Sabratha 's coastal sediments were enriched with Cd, Pb, Cu, Ni, Co and Zn (EF = 81.48, 17.26, 12.80, 11.42, 9.85 and 8.56 respectively). The highest levels of Mn, Cu, Ni, Pb and Co were recorded nearby the Mellitah complex oil and gas station in the western Libyan region, while the highest levels of Zn and Cd were recorded at the central part of the study area nearby fishing port and Sabratha hospital. Average values of Cd, Pb and Co were mostly higher than the ones recorded from the Arabian and Oman gulfs, the Red Sea, the Gulf of Aqaba, the Caspian Sea, coast of Tanzania and the background shale and the earth's crust. The high levels of most of the studied heavy metals suggested significant anthropogenic sources along Sabratha coast. The results of the present study provide a useful background for further marine studies on the Mediterranean area.

Total Suspended Matter (TSM) and Maximum Signal Depth (Z90_max) for Monitoring the Evolution of Sediment Resuspension Process in Shallow Coastal Environments

NASA Astrophysics Data System (ADS)

Filipponi, Federico; Zucca, Francesco; Taramelli, Andrea; Valentini, Emiliana

2015-12-01

Monitoring sediment fluxes patterns in coastal area, like dispersion, sedimentation and resuspension processes, is a relevant topic for scientists, decision makers and natural resources management. Time series analysis of Earth Observation (EO) data may contribute to the understanding and the monitoring of processes in sedimentary depositional marine environment, especially for shallow coastal areas. This research study show the ability of optical medium resolution imagery to interpret the evolution of sediment resuspension from seafloor in coastal areas during intense wind forcings. Intense bora wind events in northern Adriatic Sea basin during winter season provoke considerable wave-generated resuspension of sediments, which cause variation in water column turbidity. Total Suspended Matter (TSM) product has been selected as proxy for qualitative and quantitative analysis of resuspended sediments. In addition, maximum signal depth (Z90_max), has been used to evaluate the evolution of sediment concentration in the water column.

Spatial Abundance, Diversity, and Activity of Ammonia-Oxidizing Bacteria in Coastal Sediments of the Liaohe Estuary.

PubMed

Chang, Yongkai; Fan, Jingfeng; Su, Jie; Ming, Hongxia; Zhao, Wen; Shi, Yan; Ji, Fengyun; Guo, Limei; Zan, Shuaijun; Li, Bochao; Guo, Hao; Guan, Daoming

2017-05-01

Ammonia-oxidizing bacteria (AOB) play an important role in nitrification in estuaries. The aim of this study was to examine the spatial abundance, diversity, and activity of AOB in coastal sediments of the Liaohe Estuary using quantitative PCR, high-throughput sequencing of the amoA gene coding the ammonia monooxygenase enzyme active subunit, and sediment slurry incubation experiments. AOB abundance ranged from 8.54 × 10 4 to 5.85 × 10 6 copies g -1 of wet sediment weight and exhibited an increasing trend from the Liaohe Estuary to the open coastal zone. Potential nitrification rates (PNRs) ranged from 0.1 to 336.8 nmol N g -1 day -1 along the estuary to the coastal zone. Log AOB abundance and PNRs were significantly positively correlated. AOB richness decreased from the estuary to the coastal zone. High-throughput sequencing analysis indicated that the majority of amoA gene sequences fell within the Nitrosomonas and Nitrosomonas-like clade, and only a few sequences were clustered within the Nitrosospira clade. This finding indicates that the Nitrosomonas-related lineage may be more adaptable to the specific conditions in this estuary than the Nitrosospira lineage. Sites with high nitrification rates were located in the southern open region and were dominated by the Nitrosomonas-like lineage, whereas the Nitrosospira lineage was found primarily in the northern estuary mouth sites with low nitrification rates. Thus, nitrification potentials in Liaohe estuarine sediments in the southern open region were greater than those in the northern estuary mouth, and the Nitrosomonas-related lineage might play a more important role than the Nitrosospira lineage in nitrification in this estuary.

Quantifying the dilution of the radiocesium contamination in Fukushima coastal river sediment (2011–2015)

PubMed Central

Evrard, Olivier; Laceby, J. Patrick; Onda, Yuichi; Wakiyama, Yoshifumi; Jaegler, Hugo; Lefèvre, Irène

2016-01-01

Fallout from the Fukushima Dai-ichi nuclear power plant accident resulted in a 3000-km2 radioactive contamination plume. Here, we model the progressive dilution of the radiocesium contamination in 327 sediment samples from two neighboring catchments with different timing of soil decontamination. Overall, we demonstrate that there has been a ~90% decrease of the contribution of upstream contaminated soils to sediment transiting the coastal plains between 2012 (median – M – contribution of 73%, mean absolute deviation – MAD – of 27%) and 2015 (M 9%, MAD 6%). The occurrence of typhoons and the progress of decontamination in different tributaries of the Niida River resulted in temporary increases in local contamination. However, the much lower contribution of upstream contaminated soils to coastal plain sediment in November 2015 demonstrates that the source of the easily erodible, contaminated material has potentially been removed by decontamination, diluted by subsoils, or eroded and transported to the Pacific Ocean. PMID:27694832

Comparing chemolithoautotrophic subseafloor communities across geochemical gradients using meta-omics and RNA-SIP

NASA Astrophysics Data System (ADS)

Fortunato, C. S.; Huber, J. A.

2015-12-01

The chemolithoautotrophic microbial community of the rocky subseafloor potentially provides a large amount of organic carbon to the deep ocean, yet our understanding of the activity and metabolic complexity of subseafloor organisms remains poorly described. Past studies have shown that the taxonomic structure of subseafloor communities differs based on the geochemical signatures of individual vents. In this study, we expanded beyond phylogeny and used a combination of metagenomic, metatranscriptomic, and RNA-based stable isotope probing (RNA-SIP) analyses to identify the metabolic potential, expression patterns, and the active autotrophic players and genomic pathways present in venting fluids from Axial Seamount, an active submarine volcano off the coast of Oregon, USA. Low-temperature diffuse vent fluids from three hydrothermal vents, Marker 113, Marker 33, and Anemone, were filtered and preserved on the seafloor for metagenome and metatranscriptome analyses. Fluid for RNA-SIP was also collected and incubated shipboard with 13C-labeled sodium bicarbonate at 30ºC, 55ºC, and 80ºC for each vent. Taxonomically, Epsilonproteobacteria comprised a significant proportion of the community at all three vents, but each vent also had distinct groups that were abundant including SUP05 at Anemone and Methanococcus at Marker 113. Functionally, vents shared many metabolic processes including genes for denitrification, sulfur reduction and sulfur, hydrogen, and ammonium oxidation, which were present and expressed in similar abundance across all three vents. One metabolic difference between vents was the presence and expression of genes for methanogenesis, which were highly abundant and expressed at Marker 113, in lower abundance and expression at Marker 33, and not present at Anemone. RNA-SIP analysis is ongoing but initial results from Marker 113 revealed that at mesophilic, thermophilic, or hyperthemophilic temperatures, different genera and autotrophic metabolisms dominated

Heavy mineral analysis for assessing the provenance of sandy sediment in the San Francisco Bay Coastal System

USGS Publications Warehouse

Wong, Florence L.; Woodrow, Donald L.; McGann, Mary

2013-01-01

Heavy or high-specific gravity minerals make up a small but diagnostic component of sediment that is well suited for determining the provenance and distribution of sediment transported through estuarine and coastal systems worldwide. By this means, we see that surficial sand-sized sediment in the San Francisco Bay Coastal System comes primarily from the Sierra Nevada and associated terranes by way of the Sacramento and San Joaquin Rivers and is transported with little dilution through the San Francisco Bay and out the Golden Gate. Heavy minerals document a slight change from the strictly Sierran-Sacramento mineralogy at the confluence of the two rivers to a composition that includes minor amounts of chert and other Franciscan Complex components west of Carquinez Strait. Between Carquinez Strait and the San Francisco Bar, Sierran sediment is intermingled with Franciscan-modified Sierran sediment. The latter continues out the Gate and turns southward towards beaches of the San Francisco Peninsula. The Sierran sediment also fans out from the San Francisco Bar to merge with a Sierran province on the shelf in the Gulf of the Farallones. Beach-sand sized sediment from the Russian River is transported southward to Point Reyes where it spreads out to define a Franciscan sediment province on the shelf, but does not continue southward to contribute to the sediment in the Golden Gate area.

Pelolinea submarina gen. nov., sp. nov., an anaerobic, filamentous bacterium of the phylum Chloroflexi isolated from subseafloor sediment.

PubMed

Imachi, Hiroyuki; Sakai, Sanae; Lipp, Julius S; Miyazaki, Masayuki; Saito, Yumi; Yamanaka, Yuko; Hinrichs, Kai-Uwe; Inagaki, Fumio; Takai, Ken

2014-03-01

A novel, anaerobic filamentous bacterium, strain MO-CFX1(T), was isolated from a methanogenic community, which was originally established from subseafloor sediments collected from off the Shimokita Peninsula, Japan. Cells were non-spore-forming, non-motile, Gram-stain-negative and filamentous. The filaments were longer than 10 µm and 130-150 nm in width. Growth of the strain was observed at 10-37 °C (optimum 25-30 °C), at pH 5.5-8.5 (optimum pH 7.0) and in 0-50 g NaCl l(-1) (optimum 15 g NaCl l(-1)). The strain was able to grow with a number of carbohydrates in the presence of yeast extract. The major cellular fatty acids were monounsaturated C18 : 1ω9, C16 : 1ω7 and saturated C18 : 0 and C16 : 0. The intact polar lipids of the strain were dominated by diacylglyceride and sphingolipid core lipid structures with monoglycosidic, mixed phosphomonoglycosidic and fatty-acid-modified monoglycosidic polar head groups. The G+C content of the genomic DNA was 52.4 mol%. Based on the comparative 16S rRNA gene sequence analysis, strain MO-CFX1(T) was affiliated with the class Anaerolineae within the phylum Chloroflexi and was most closely related to Leptolinea tardivitalis YMTK-2(T) (sequence identity of 91.0 %). Based on phenotypic and genetic properties of the novel isolate, we propose a novel species representing a new genus Pelolinea submarina gen. nov., sp. nov., for strain MO-CFX1(T) ( = JCM 17238(T), = KCTC 5975(T)). This is the first formal description, to our knowledge, of an isolate of the phylum Chloroflexi from the deep-sea sedimentary environment.

Refining the Subseafloor Circulation Model of the Middle Valley Hydrothermal System Using Fluid Geochemistry

NASA Astrophysics Data System (ADS)

Inderbitzen, K. E.; Wheat, C. G.; Baker, P. A.; Fisher, A. T.

2014-12-01

Currently, fluid circulation patterns and the evolution of rock/fluid compositions as circulation occurs in subseafloor hydrothermal systems are poorly constrained. Sedimented spreading centers provide a unique opportunity to study subsurface flow because sediment acts as an insulating blanket that traps heat from the cooling magma body and limits: (a) potential flow paths for seawater to recharge the aquifer in permeable upper basaltic basement and (b) points of altered fluid egress. This also allows for a range of thermal and geochemical gradients to exist near the sediment-water interface. Models of fluid circulation patterns in this type of hydrologic setting have been generated (eg. Stein and Fisher, 2001); however fluid chemistry datasets have not previously been used to test the model's viability. We address this issue by integrating the existing circulation model with fluid compositional data collected from sediment pore waters and high temperature hydrothermal vents located in Middle Valley on the Juan de Fuca Ridge. Middle Valley hosts a variety of hydrologic regimes: including areas of fluid recharge (Site 855), active venting (Site 858/1036; Dead Dog vent field), recent venting (Site 856/1035; Bent Hill Massive Sulfide deposit) and a section of heavily sedimented basement located between recharge and discharge sites (Site 857). We will present new results based on thermal and geochemical data from the area of active venting (Sites 858 and 1036), that was collected during Ocean Drilling Program Legs 139 and 169 and a subsequent heat flow/gravity coring effort. These results illuminate fine scale controls on secondary recharge and fluid flow within the sediment section at Site 858/1036. The current status of high temperature vents in this area (based on observations made in July, 2014) will also be outlined.

Novel applications for biogeophysics: Prospects for detecting key subseafloor geomicrobiological processes or habitats

NASA Astrophysics Data System (ADS)

Colwell, F. S.; Ntarlagiannis, D.

2007-05-01

The new subdiscipline of biogeophysics has focused mostly on the geophysical signatures of microbial processes in contaminated subsurface environments usually undergoing remediation. However, the use of biogeophysics to examine the biogeochemistry of marine sediments has not yet been well-integrated into conceptual models that describe subseafloor processes. Current examples of geophysical measurements that have been used to detect geomicrobiological processes or infer their location in the seafloor include sound surveillance system (SOSUS)-derived data that detect seafloor eruptive events, deep and shallow cross-sectional seismic surveys that determine the presence of hydraulically conductive zones or gas-bearing sediments (e.g., bottom-simulating reflectors or bubble-rich strata), and thermal profiles. One possible area for innovative biogeophysical characterization of the seafloor involves determining the depth of the sulfate-methane interface (SMI) in locations where sulfate diffuses from the seawater and methane emanates from subsurface strata. The SMI demarcates a stratum where microbially-driven anaerobic methane oxidation (AMO) is dependent upon methane as an electron donor and sulfate as an electron acceptor. AMO is carried out by a recently defined, unique consortium of microbes that metabolically temper the flux of methane into the overlying seawater. The depth of the SMI is, respectively, shallow or deep according to whether a high or low rate of methane flux occurs from the deep sediments. Presently, the SMI can only be determined by direct measurements of methane and sulfate concentrations in the interstitial waters or by molecular biological techniques that target the microbes responsible for creating the SMI. Both methods require collection and considerable analysis of sediment samples. Therefore, detection of the SMI by non-destructive methods would be advantageous. As a key biogeochemical threshold in marine sediments, the depth of the SMI defines

Metal release from contaminated coastal sediments under changing pH conditions: Implications for metal mobilization in acidified oceans.

PubMed

Wang, Zaosheng; Wang, Yushao; Zhao, Peihong; Chen, Liuqin; Yan, Changzhou; Yan, Yijun; Chi, Qiaoqiao

2015-12-30

To investigate the impacts and processes of CO2-induced acidification on metal mobilization, laboratory-scale experiments were performed, simulating the scenarios where carbon dioxide was injected into sediment-seawater layers inside non-pressurized chambers. Coastal sediments were sampled from two sites with different contamination levels and subjected to pre-determined pH conditions. Sediment samples and overlying water were collected for metal analysis after 10-days. The results indicated that CO2-induced ocean acidification would provoke increased metal mobilization causing adverse side-effects on water quality. The mobility of metals from sediment to the overlying seawater was correlated with the reduction in pH. Results of sequential extractions of sediments illustrated that exchangeable metal forms were the dominant source of mobile metals. Collectively, our data revealed that high metal concentrations in overlying seawater released from contaminated sediments under acidic conditions may strengthen the existing contamination gradients in Maluan Bay and represent a potential risk to ecosystem health in coastal environments. Copyright © 2015 Elsevier Ltd. All rights reserved.

Comprehensive large-scale investigation and assessment of trace metal in the coastal sediments of Bohai Sea.

PubMed

Li, Hongjun; Gao, Xuelu; Gu, Yanbin; Wang, Ruirui; Xie, Pengfei; Liang, Miao; Ming, Hongxia; Su, Jie

2018-04-01

The Bohai Sea is characterized as a semi-closed sea with limited water exchange ability, which has been regarded as one of the most contaminated regions in China and has attracted public attention over the past decades. In recent years, the rapid industrialization and urbanization around the coastal region has resulted in a severe pollution pressure in the Bohai Sea. Although efforts from official government and scientific experts have been made to protect and restore the marine ecosystem, satisfactory achievements were not gained. Moreover, partial coastal areas in the Bohai Sea seemingly remain heavily polluted. In this study, we focused on five coastal regions around the Bohai Sea to study the spatial distribution pattern of trace elements in the sediments and their ecological risk. A total of 108 sediment samples were analyzed to determine the contamination degree of trace elements (Cu, Cd, As, Pb, Zn, Cr, and Hg). Contamination factor (CF), pollution load index (PLI), geoaccumulation index (I geo ), and potential ecological risk index (PERI) were utilized to assess the pollution extent of these metals. Spatial distribution patterns revealed that the sedimentary environments of coastal Bohai were in good condition, except Jinzhou Bay, according to the Marine Sediment Quality of China. The concentrations of Hg and Cd were considerably higher than the average upper crust value and presented high potential ecological risk and considerable potential ecological risk, respectively. The overall environment quality of the coastal Bohai Sea does not seem to pose an extremely serious threat in terms of metal pollution. Thus, the government should continue implementing pollution control programs in the Bohai Sea. Copyright © 2018 Elsevier Ltd. All rights reserved.

Sediment contribution from coastal-cliff erosion into the Nile's littoral cell and its significance to cliff-retreat mitigation efforts

NASA Astrophysics Data System (ADS)

Katz, Oded; Mushkin, Amit; Crouvi, Onn; Alter, Samuel; Shemesh, Ran

2017-04-01

In 2013 the government of Israel initiated a national mitigation program aimed to prevent further collapse and retreat of the country's coastal cliffs, which occur along the northern termination of the Niles's littoral cell (NLC) in the eastern Mediterranean. The goals of this large-scale program are to protect infrastructure and property proximal to the cliff and to conduct long-term maintenance and monitoring of this highly dynamic and sensitive land-sea interface that spans 40 km of Israel's coast line. Here, we examine the possible impact of proposed cliff retreat mitigation efforts on long-shore sediment transport (LST) and coastal dynamics in the region. We used airborne LiDAR spanning a 9-year period between 2006 and 2015 to quantify the annual contribution of sediment eroded from a 20-km-long segment of Israel's coastal cliffs into the NLC. Our measurements reveal 282±85*103 m3 of sediment eroded from the cliff and delivered into the NLC during the studied period. Considering our study area comprises 50% of Israel's sea cliffs we infer an average contribution rate of 30,000-60,000 m^3/yr of cliff-derived sediment into the NLC prior to the planned broad-scale implementation of cliff-retreat mitigation measures. Previous studies report an average net LST flux of 80,000 - 90,000 m3 that reaches the northern termination of the NLC at Haifa Bay annually. Thus, our results suggest that Israel's actively eroding coastal cliffs are primary contributors (40-80%) to the LST budget along the northern termination of the NLC. It therefore appears that successful implementation of the coastal-cliff protection program along Israel's coastline will result in a significant sand deficit, which may drive LST in this part of the NLC out of its 'background' state. In the likely case that the energy/currents driving LST do not change, a possible outcome of this sediment deficit could be increased beach erosion along Israel's coast line to make up for the lost volumes of cliff

Sediment contribution from coastal-cliff erosion into the Nile's littoral cell and its significance to cliff-retreat mitigation efforts

NASA Astrophysics Data System (ADS)

Katz, O.; Mushkin, A.; Crouvi, O.; Alter, S.; Shemesh, R.

2016-12-01

In 2013 the government of Israel initiated a national mitigation program aimed to prevent further collapse and retreat of the country's coastal cliffs, which occur along the northern termination of the Niles's littoral cell (NLC) in the eastern Mediterranean. The goals of this large-scale program are to protect infrastructure and property proximal to the cliff and to conduct long-term maintenance and monitoring of this highly dynamic and sensitive land-sea interface that spans 40 km of Israel's coast line. Here, we examine the possible impact of proposed cliff retreat mitigation efforts on long-shore sediment transport (LST) and coastal dynamics in the region. We used airborne LiDAR spanning a 9-year period between 2006 and 2015 to quantify the annual contribution of sediment eroded from a 20-km-long segment of Israel's coastal cliffs into the NLC. Our measurements reveal 282±85*103 m3 of sediment eroded from the cliff and delivered into the NLC during the studied period. Considering our study area comprises 50% of Israel's sea cliffs we infer an average contribution rate of 30,000-60,000 m3/yr of cliff-derived sediment into the NLC prior to the planned broad-scale implementation of cliff-retreat mitigation measures. Previous studies report an average net LST flux of 80,000 - 90,000 m3 that reaches the northern termination of the NLC at Haifa Bay annually. Thus, our results suggest that Israel's actively eroding coastal cliffs are primary contributors (40-80%) to the LST budget along the northern termination of the NLC. It therefore appears that successful implementation of the coastal-cliff protection program along Israel's coastline will result in a significant sand deficit, which may drive LST in this part of the NLC out of its `background' state. In the likely case that the energy/currents driving LST do not change, a possible outcome of this sediment deficit could be increased beach erosion along Israel's coast line to make up for the lost volumes of cliff

Biogeochemical Cycle of Methanol in Anoxic Deep-Sea Sediments

PubMed Central

Yanagawa, Katsunori; Tani, Atsushi; Yamamoto, Naoya; Hachikubo, Akihiro; Kano, Akihiro; Matsumoto, Ryo; Suzuki, Yohey

2016-01-01

The biological flux and lifetime of methanol in anoxic marine sediments are largely unknown. We herein reported, for the first time, quantitative methanol removal rates in subsurface sediments. Anaerobic incubation experiments with radiotracers showed high rates of microbial methanol consumption. Notably, methanol oxidation to CO2 surpassed methanol assimilation and methanogenesis from CO2/H2 and methanol. Nevertheless, a significant decrease in methanol was not observed after the incubation, and this was attributed to the microbial production of methanol in parallel with its consumption. These results suggest that microbial reactions play an important role in the sources and sinks of methanol in subseafloor sediments. PMID:27301420

Effect of physical sediments reworking on hydrocarbon degradation and bacterial community structure in marine coastal sediments.

PubMed

Duran, Robert; Bonin, Patricia; Jezequel, Ronan; Dubosc, Karine; Gassie, Claire; Terrisse, Fanny; Abella, Justine; Cagnon, Christine; Militon, Cecile; Michotey, Valérie; Gilbert, Franck; Cuny, Philippe; Cravo-Laureau, Cristiana

2015-10-01

The present study aimed to examine whether the physical reworking of sediments by harrowing would be suitable for favouring the hydrocarbon degradation in coastal marine sediments. Mudflat sediments were maintained in mesocosms under conditions as closer as possible to those prevailing in natural environments with tidal cycles. Sediments were contaminated with Ural blend crude oil, and in half of them, harrowing treatment was applied in order to mimic physical reworking of surface sediments. Hydrocarbon distribution within the sediment and its removal was followed during 286 days. The harrowing treatment allowed hydrocarbon compounds to penetrate the first 6 cm of the sediments, and biodegradation indexes (such as n-C18/phytane) indicated that biodegradation started 90 days before that observed in untreated control mesocosms. However, the harrowing treatment had a severe impact on benthic organisms reducing drastically the macrofaunal abundance and diversity. In the harrowing-treated mesocosms, the bacterial abundance, determined by 16S rRNA gene Q-PCR, was slightly increased; and terminal restriction fragment length polymorphism (T-RFLP) analyses of 16S rRNA genes showed distinct and specific bacterial community structure. Co-occurrence network and canonical correspondence analyses (CCA) based on T-RFLP data indicated the main correlations between bacterial operational taxonomic units (OTUs) as well as the associations between OTUs and hydrocarbon compound contents further supported by clustered correlation (ClusCor) analysis. The analyses highlighted the OTUs constituting the network structural bases involved in hydrocarbon degradation. Negative correlations indicated the possible shifts in bacterial communities that occurred during the ecological succession.

The Preliminary Study of Organochlorine Pesticide Residues on Sediments of Bivalvia Fishing Ground at Eastern Part of Coastal Semarang

NASA Astrophysics Data System (ADS)

Adhi Suryono, Chrisna; Subagyo; Setyati, Wilis Ari; Sri Susilo, Endang; Rochaddi, Baskoro; Triaji Mahendrajaya, Robertus

2018-02-01

This paper presents the occurrence level of organochlorine contamination in marine sediments of Semarang coastal areas as a fishing ground of Bivalvia. Five compounds (Heptachlor, Aldrin, Endosulfan, Endrin and pp-DDT) of contaminant have been determined in the sediments surface of Semarang coastal waters. The samples were then analyzed by using gas chromatography and followed by using the method of Standard Method Examination. The result showed that the average concentration of organochlorine pesticides Heptachlor, Aldrin, Endosulfan, Endrin and pp-DDT were 25.5, bellow detected, 7.1, 37.2, 28.6 μ g/L, respectively. The high concentration of pesticide showed on Endrin (65,84 ppb), pp-DDT (29,53 μ g/L), and heptachlor (25,45 μ g/L). The low concentrations were detected on aldrin (bellow detected) and endosulfan (0,92 μ g/L). The concentration of organochlorine pesticides in these areas might contribute on four rivers which deposited the sediment in these coastal waters

Polycyclic aromatic hydrocarbons in sediments and marine organisms: Implications of anthropogenic effects on the coastal environment.

PubMed

Sun, Runxia; Sun, Yue; Li, Qing X; Zheng, Xiaobo; Luo, Xiaojun; Mai, Bixian

2018-05-30

Intensive human activities aggravate environmental pollution, particularly in the coastal environment. Sixteen priority polycyclic aromatic hydrocarbons (PAHs) were determined in the sediments and marine species from Zhanjiang Harbor, a large harbor in China. The total PAH concentrations ranged from 151 to 453 ng/g dry weight (dw) in sediments and from 86.7 to 256 ng/g wet weight (ww) in organism tissues. High levels of PAHs occurred in the sample sites next to the estuary. A decrease in PAH levels was observed in comparison to the previous survey prior to 2012. Fish exhibited lower lipid weight normalized PAH concentrations than the other species, which may be related to their efficient metabolic transformation. Three ring PAHs dominated both in marine sediments and species, but low molecular weight PAHs exhibited higher proportions in biota than in sediments (p < 0.05). Petrogenic and pyrolytic sources both contributed to the occurrence of PAHs, and the latter became increasingly important in the study area. The ecological risk from PAHs in the sediments was relatively low (9% incidence of adverse biological effect) according to the effects-based sediment quality guideline values. Exposure to PAHs via consuming seafoods might pose a health risk to local residents. Overall, these results revealed anthropogenic activities in the coastal area have an impact on the local ecosystem. Copyright © 2018 Elsevier B.V. All rights reserved.

Characterization and modeling of sediment settling, consolidation, and suspension to optimize coastal Louisiana restoration

NASA Astrophysics Data System (ADS)

Sha, X.; Xu, K.; Bentley, S. J.; Robichaux, P. A.

2018-04-01

Many research efforts have been undertaken over many decades in the field of Louisiana coastal restoration, but long-term experiments for sediment suspension and consolidation in diversion-receiving basins are still limited, despite significance of this topic to ongoing restoration strategies. Sediment samples were collected from two active diversions on the Mississippi River: West Bay, a semi-enclosed bay located on the Mississippi River Delta and fed by the West Bay Diversion, and from Big Mar pond, a receiving basin of the Caernarvon freshwater diversion from the lower Mississippi River, Louisiana, USA. A dual-core Gust Erosion Microcosm System was used to measure time-series (0.5, 1, 2, 3, 4, 5, and 6-months after initial settling) erodibility at seven shear stress regimes (0.01-0.60 Pa) using experimental cores prepared with two initial sediment concentrations (60 and 120 kg m-3). A 230-cm tall settling column with nine sampling ports was used to measure the consolidation rates for initial sediment concentrations ranging from fluid mud (10 kg m-3) to dredge effluent (120 kg m-3), in combination with two levels of salinity (1 and 5). The erodibility of West Bay sediment decreased with increasing time of consolidation. The critical shear stress for resuspension increased from 0.2 Pa after 2 months to 0.45 Pa after 4 months of consolidation. The consolidation rates were inversely and exponentially related to initial sediment concentrations. Consolidation tests in salinity of 1 generally settled faster than that in salinity of 5, and consolidation tests with low sediment concentration tests generally settled faster than high-concentration tests. An exponential coefficient was added in the Sanford (2008) model to better predict the consolidation profile of both rapid early settling and slow self-weight consolidation processes. Our study suggests that enclosed basin, low salinity, relatively low sediment concentration and minimized disturbance for 4 months all favor

Deep sub-seafloor prokaryotes stimulated at interfaces over geological time.

PubMed

Parkes, R John; Webster, Gordon; Cragg, Barry A; Weightman, Andrew J; Newberry, Carole J; Ferdelman, Timothy G; Kallmeyer, Jens; Jørgensen, Bo B; Aiello, Ivano W; Fry, John C

2005-07-21

The sub-seafloor biosphere is the largest prokaryotic habitat on Earth but also a habitat with the lowest metabolic rates. Modelled activity rates are very low, indicating that most prokaryotes may be inactive or have extraordinarily slow metabolism. Here we present results from two Pacific Ocean sites, margin and open ocean, both of which have deep, subsurface stimulation of prokaryotic processes associated with geochemical and/or sedimentary interfaces. At 90 m depth in the margin site, stimulation was such that prokaryote numbers were higher (about 13-fold) and activity rates higher than or similar to near-surface values. Analysis of high-molecular-mass DNA confirmed the presence of viable prokaryotes and showed changes in biodiversity with depth that were coupled to geochemistry, including a marked community change at the 90-m interface. At the open ocean site, increases in numbers of prokaryotes at depth were more restricted but also corresponded to increased activity; however, this time they were associated with repeating layers of diatom-rich sediments (about 9 Myr old). These results show that deep sedimentary prokaryotes can have high activity, have changing diversity associated with interfaces and are active over geological timescales.

Hydrogen Limitation, Competition and Syntrophy Among Thermophiles in the Hot Subseafloor

NASA Astrophysics Data System (ADS)

Holden, J. F.; Stewart, L. C.; Topcuoglu, B. D.

2016-02-01

To understand the biogeochemical impact of subseafloor life on surrounding environments and the overlying ocean, the rates of and constraints on growth and metabolite production must be determined for subseafloor microbes. The diversity of thermophiles and hyperthermophiles in the hot subseafloor is low, making them amenable to biogeochemical modeling. At hydrothermal vents, Methanothermococcus and Methanocaldococcus are common thermophilic and hyperthermophilic methanogens; Desulfurobacterium, common thermophilic autotrophic sulfur reducers; and Thermococcus, common hyperthermophilic H2-producing heterotrophs. Diffuse hydrothermal fluids (7-40°C) from Axial Seamount were incubated anaerobically at 55°C and 80°C. Microcosms with 1.2 mM added H2 produced 30-50 times more CH4 than those with 20 µM H2, demonstrating that H2 and heat were the primary constraints on the growth of thermophilic and hyperthermophilic methanogens. For Methanothermococcus thermolithotrophicus and Methanocaldococcus jannaschii, the lower H2 thresholds and half-saturation constants (Ks) for growth in a chemostat were 9-20 µM and 47-69 µM, respectively, near their optimum growth temperatures. The lower H2 threshold and Ks for Desulfurobacterium sp. strain HR11 grown in a batch reactor at 72°C were <3 µM and 29 µM, respectively. Its catalytic efficiency (µmax/Ks) for H2 use was 4 times higher than those of M. thermolithotrophicus and M. jannaschii, but its Ks for thiosulfate was 19 µM, suggesting that it will only outcompete methanogens when sulfur is not growth limiting. Microcosm incubations at 55°C and 80°C supplemented with peptides in lieu of H2 produced the same amount of CH4 as microcosms with 1.2 mM H2. Co-culture incubations showed that H2 production by T. paralvinellae supported the growth of Methanothermococcus sp. strain BW11, Methanocaldococcus bathoardescens, and strain HR11 in H2-free medium, suggesting that syntrophy is a possible alternative H2 source in the

Observations of coastal sediment dynamics of the Tijuana Estuary Fine Sediment Fate and Transport Demonstration Project, Imperial Beach, California

USGS Publications Warehouse

Warrick, Jonathan A.; Rosenberger, Kurt J.; Lam, Angela; Ferreiera, Joanne; Miller, Ian M.; Rippy, Meg; Svejkovsky, Jan; Mustain, Neomi

2012-01-01

Coastal restoration and management must address the presence, use, and transportation of fine sediment, yet little information exists on the patterns and/or processes of fine-sediment transport and deposition for these systems. To fill this information gap, a number of State of California, Federal, and private industry partners developed the Tijuana Estuary Fine Sediment Fate and Transport Demonstration Project ("Demonstration Project") with the purpose of monitoring the transport, fate, and impacts of fine sediment from beach-sediment nourishments in 2008 and 2009 near the Tijuana River estuary, Imperial Beach, California. The primary purpose of the Demonstration Project was to collect and provide information about the directions, rates, and processes of fine-sediment transport along and across a California beach and nearshore setting. To achieve these goals, the U.S. Geological Survey monitored water, beach, and seafloor properties during the 2008–2009 Demonstration Project. The project utilized sediment with ~40 percent fine sediment by mass so that the dispersal and transport of fine sediment would be easily recognizable. The purpose of this report is to present and disseminate the data collected during the physical monitoring of the Demonstration Project. These data are available online at the links noted in the "Additional Digital Information" section. Synthesis of these data and results will be provided in subsequent publications.

NEAR-COASTAL SEDIMENT AS A HABITAT IN THE GULF OF MEXICO: CHEMICAL QUALITY, TOXICITY, AND BENTHIC COMMUNITY COMPOSITION

EPA Science Inventory

Sediment quality was determined in a multiyear study for 108 near-coastal sites located in Mississippi, Alabama and Florida. The primary objective of the study was to determine the relative impact of common stressor sources on sediment quality utilizing a weight-of-evidence appro...

Coastal Modeling System

DTIC Science & Technology

2015-11-04

Coastal Inlets Research Program Coastal Modeling System The work unit develops the Coastal Modeling System ( CMS ) and conducts basic research to...further understanding of sediment transport under mixed oceanic and atmospheric forcing. The CMS is a suite of coupled two-dimensional numerical...models for simulations of waves, hydrodynamics, salinity and sediment transport, and morphology change. The CMS was identified by the USACE Hydraulics

Mercury Enrichment in Sediments of the Coastal Area of Northern Latium, Italy.

PubMed

Scanu, Sergio; Piazzolla, Daniele; Frattarelli, Francesco Manfredi; Mancini, Emanuele; Tiralongo, Francesco; Brundo, Maria Violetta; Tibullo, Daniele; Pecoraro, Roberta; Copat, Chiara; Ferrante, Margherita; Marcelli, Marco

2016-05-01

The purpose of this study was to evaluate the extent of the Hg geochemical anomaly arising in the Amiata and Tolfa complex to the coastal area of northern Latium and to examine the possible influence on this area by the Mignone River, and by the small coastal basins, which are characterized by both previous mining activities and decades of past industrial impact. The results confirm the extension of the anomaly of concentrations of Hg in the coastal area of northern Latium, with the northern sector influenced by the contributions of the Fiora and Mignone Rivers and the southern sector influenced by the contributions of minor basins. The results show high values of the Adverse Effect Index throughout the considered area and highlight the need for further investigation in order to assess the impact of human activities on the present and past values of Hg in marine sediments.

Distribution of metal concentrations in sediments of the coastal zone of the Gulf of Riga and open part of the Baltic Sea

NASA Astrophysics Data System (ADS)

Seisuma, Z.; Kulikova, I.

2012-11-01

The comparison of spatial and temporal distribution of Hg, Cd, Pb, Cu, Ni, Zn, Mn and Fe concentrations in sediments from the Gulf of Riga and open Baltic Sea along the coastal zone is presented for the first time. There were considerable differences in Pb, Zn, Mn and Fe levels in sediment at various stations of the Gulf of Riga. A significant difference of Cd, Pb, Cu, Ni, Zn levels was found in sediments of various stations in the open Baltic coast. The amount of Cd, Pb, Cu, Ni, Zn and Fe levels also differed significantly in the sediments of the Gulf of Riga in different years. A considerable yearly difference in amount of Hg, Cd, Pb, Cu, Ni and Mn levels was found in sediments in the open Baltic coast. The essential highest values of Pb and Zn in coastal sediments of the open Baltic Sea are stated in comparison with the Gulf of Riga. The concentrations of other metals have only a tendency to be higher in coastal sediments of the open Baltic Sea in comparison with the Gulf of Riga. Natural and anthropogenic factors were proved to play an important role in determining resultant metals concentrations in the regions.

Evaluation of submarine strain-gage systems for monitoring coastal sediment migration

NASA Technical Reports Server (NTRS)

Shideler, G. L.; Mcgrath, D. G.

1973-01-01

Single and multiple strain-gage systems were respectively evaluated as in situ point and areal sensors for monitoring sand-height variations in coastal environments. Static loading tests indicate that gage response pressure is linear for sand heights up to 24 inches. Response pressures are a function of both sand height and aggregate density, with density being influenced by both sediment texture and degree of compaction. Poorer sediment sorting and greater compaction result in higher response pressures. Field tests in a beach foreshore environment indicate that the gage systems are effective qualitative instruments for monitoring long-period migration trends of beach sediments; whereas, short-period responses are not sufficiently reliable. The durability and compactness of the gage systems must be substantially increased for effective field operations. It is recommended that the systems' qualitative potentials be further developed, whereas their development as quantitative instruments be terminated. Further development should emphasize the construction of remote recording systems designed for semipermanent installation.

Sphaerochaeta multiformis sp. nov., an anaerobic, psychrophilic bacterium isolated from subseafloor sediment, and emended description of the genus Sphaerochaeta.

PubMed

Miyazaki, Masayuki; Sakai, Sanae; Ritalahti, Kirsti M; Saito, Yayoi; Yamanaka, Yuko; Saito, Yumi; Tame, Akihiko; Uematsu, Katsuyuki; Löffler, Frank E; Takai, Ken; Imachi, Hiroyuki

2014-12-01

An anaerobic, psychrophilic bacterium, strain MO-SPC2(T), was isolated from a methanogenic microbial community in a continuous-flow bioreactor that was established from subseafloor sediments collected from off the Shimokita Peninsula of Japan in the north-western Pacific Ocean. Cells were pleomorphic: spherical, annular, curved rod, helical and coccoid cell morphologies were observed. Motility only occurred in helical cells. Strain MO-SPC2(T) grew at 0-17 °C (optimally at 9 °C), at pH 6.0-8.0 (optimally at pH 6.8-7.2) and in 20-40 g NaCl l(-1) (optimally at 20-30 NaCl l(-1)). The strain grew chemo-organotrophically with mono-, di- and polysaccharides. The major end products of glucose fermentation were acetate, ethanol, hydrogen and carbon dioxide. The abundant polar lipids of strain MO-SPC2(T) were phosphatidylglycolipids, phospholipids and glycolipids. The major cellular fatty acids were C14 : 0, C16 : 0 and C16 : 1ω9. Isoprenoid quinones were not detected. The G+C content of the DNA was 32.3 mol%. 16S rRNA gene-based phylogenetic analysis showed that strain MO-SPC2(T) was affiliated with the genus Sphaerochaeta within the phylum Spirochaetes, and its closest relatives were Sphaerochaeta pleomorpha Grapes(T) (88.4 % sequence identity), Sphaerochaeta globosa Buddy(T) (86.7 %) and Sphaerochaeta coccoides SPN1(T) (85.4 %). Based on phenotypic characteristics and phylogenetic traits, strain MO-SPC2(T) is considered to represent a novel species of the genus Sphaerochaeta, for which the name Sphaerochaeta multiformis sp. nov. is proposed. The type strain is MO-SPC2(T) ( = JCM 17281(T) = DSM 23952(T)). An emended description of the genus Sphaerochaeta is also proposed. © 2014 IUMS.

Radiolytic Hydrogen Production in the Subseafloor Basaltic Aquifer.

PubMed

Dzaugis, Mary E; Spivack, Arthur J; Dunlea, Ann G; Murray, Richard W; D'Hondt, Steven

2016-01-01

Hydrogen (H2) is produced in geological settings by dissociation of water due to radiation from radioactive decay of naturally occurring uranium ((238)U, (235)U), thorium ((232)Th) and potassium ((40)K). To quantify the potential significance of radiolytic H2 as an electron donor for microbes within the South Pacific subseafloor basaltic aquifer, we use radionuclide concentrations of 43 basalt samples from IODP Expedition 329 to calculate radiolytic H2 production rates in basement fractures. The samples are from three sites with very different basement ages and a wide range of alteration types. U, Th, and K concentrations vary by up to an order of magnitude from sample to sample at each site. Comparison of our samples to each other and to the results of previous studies of unaltered East Pacific Rise basalt suggests that significant variations in radionuclide concentrations are due to differences in initial (unaltered basalt) concentrations (which can vary between eruptive events) and post-emplacement alteration. However, there is no clear relationship between alteration type and calculated radiolytic yields. Local maxima in U, Th, and K produce hotspots of H2 production, causing calculated radiolytic rates to differ by up to a factor of 80 from sample to sample. Fracture width also greatly influences H2 production, where microfractures are hotspots for radiolytic H2 production. For example, H2 production rates normalized to water volume are 190 times higher in 1 μm wide fractures than in fractures that are 10 cm wide. To assess the importance of water radiolysis for microbial communities in subseafloor basaltic aquifers, we compare electron transfer rates from radiolysis to rates from iron oxidation in subseafloor basalt. Radiolysis appears likely to be a more important electron donor source than iron oxidation in old (>10 Ma) basement basalt. Radiolytic H2 production in the volume of water adjacent to a square cm of the most radioactive SPG basalt may support as

Sediment and nutrients transport in watershed and their impact on coastal environment

PubMed Central

Ikeda, Syunsuke; Osawa, Kazutoshi; Akamatsu, Yoshihisa

2009-01-01

Sediment and nutrients yields especially from farmlands were studied in a watershed in Ishigaki island, Okinawa, Japan. The transport processes of these materials in rivers, mangrove, lagoon and coastal zones were studied by using various observation methods including stable isotope analysis. They were simulated by using a WEPP model which was modified to be applicable to such small islands by identifying several factors from the observations. The model predicts that a proper combination of civil engineering countermeasure and change of farming method can reduce the sediment yield from the watershed by 74%. Observations of water quality and coral recruitment test in Nagura bay indicate that the water is eutrophicated and the corals cannot grow for a long time. Based on these observations, a quantitative target of the reduction of sediment and nutrients yield in watershed can be decided rationally. PMID:19907124

Mercury Concentrations in Coastal Sediment from Younger Lagoon, Central California

NASA Astrophysics Data System (ADS)

Hohn, R. A.; Ganguli, P. M.; Swarzenski, P. W.; Richardson, C. M.; Merckling, J.; Johnson, C.; Flegal, A. R.

2013-12-01

Younger Lagoon Reserve, located in northern Monterey Bay, is one of the few relatively undisturbed wetlands that remain along the Central Coast of California. This lagoon system provides protected habitat for more than 100 bird species and for populations of fish, mammals, and invertebrates. Total mercury (HgT) concentrations in water within Younger Lagoon appear to vary with rainfall conditions and range from about 5-15 pM. These concentrations are similar to HgT in water from six nearby lagoon systems. However, Younger Lagoon contains elevated concentrations of dissolved organic carbon (~1 mM) and monomethylmercury (MMHg, ~1 pM) relative to our comparison lagoon sites (DOC < 0.5 mM and MMHg < 0.5 pM). We attribute Younger Lagoon's high DOC and MMHg to its restricted connection to the ocean and minor riverine contribution. Coastal lagoons in this region typically form at the mouth of streams. They behave as small estuaries during the wet season when surface water discharge keeps the mouth of the stream open to the ocean, and then transition into lagoons in the dry season when a sand berm develops and effectively cuts off surface water exchange. At Younger Lagoon, the sand berm remains intact throughout the year, breaching only during particularly high tides or intense rain events. Therefore, the lagoon's connection to nearshore seawater is primarily via surface water - groundwater interaction through the sand berm. Because Younger Lagoon is largely isolated from a surface water connection with the ocean, runoff from upgradient urban and agricultural land has an enhanced impact on water (and presumably sediment) quality. As a result, the lagoon is eutrophic and experiences annual algal blooms. Groundwater surveys suggest surface water, groundwater, and coastal seawater are hydraulically connected at Younger Lagoon, and mixing among these water masses appears to influence water geochemistry. To date, no chemical analyses have been conducted on sediment from Younger

Age and correlation of tertiary sediments in the western South Carolina Coastal Plain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Laws, R.A.; Harris, W.B.; Zullo, V.A.

1987-01-01

Integration of coastal onlap stratigraphy, calcareous nannofossil, dinoflagellate, and megafossil biostratigraphy provide new data for interpretation of age and interregional correlation of Paleocene to Oligocene deposits of the western South Carolina Coastal Plain. Clastic and calcareous sediments examined in cores and outcrops in the vicinity of the Savannah River Plant record at least seven coastal onlap cycles. Basal Tertiary sediments of the Ellenton Formation represent cycles TA1.1 - 1.3 and contain dinoflagellates of Midwayan to Sabinian age. The overlying Williamsburg Formation probably represents deposits of cycle TA2.1. The superjacent siliciclastics of the Congaree Formation contain few fossils, but may preservemore » transgressive and highstand deposits of cycles TA2.4 - 3.3. The overlying unit is commonly calcareous, contains nannofossils indicative of zones NP16-17 (Upper Claibornian), and marks a significant change in depositional style subsequent to the 49.5 Ma eustatic fall. ''Marls'' of the overlying Griffins Landing Member of the Dry Branch Formation contain micro- and megafossils of Late Eocene (Jacksonian) age and represent transgressive deposits of cycle TA4.1. The discontinuous lateral distribution of these calcareous units and overlying clastics of the Dry Branch and Tobacco Road Formations results largely from erosion and deep incision during the mid-Oligocene eustatic fall (30 Ma). The ''Upland'' unit is interpreted as being deposited on this erosional surface.« less

Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments

PubMed Central

Jeanbille, Mathilde; Gury, Jérôme; Duran, Robert; Tronczynski, Jacek; Ghiglione, Jean-François; Agogué, Hélène; Saïd, Olfa Ben; Taïb, Najwa; Debroas, Didier; Garnier, Cédric; Auguet, Jean-Christophe

2016-01-01

Benthic microorganisms are key players in the recycling of organic matter and recalcitrant compounds such as polyaromatic hydrocarbons (PAHs) in coastal sediments. Despite their ecological importance, the response of microbial communities to chronic PAH pollution, one of the major threats to coastal ecosystems, has received very little attention. In one of the largest surveys performed so far on coastal sediments, the diversity and composition of microbial communities inhabiting both chronically contaminated and non-contaminated coastal sediments were investigated using high-throughput sequencing on the 18S and 16S rRNA genes. Prokaryotic alpha-diversity showed significant association with salinity, temperature, and organic carbon content. The effect of particle size distribution was strong on eukaryotic diversity. Similarly to alpha-diversity, beta-diversity patterns were strongly influenced by the environmental filter, while PAHs had no influence on the prokaryotic community structure and a weak impact on the eukaryotic community structure at the continental scale. However, at the regional scale, PAHs became the main driver shaping the structure of bacterial and eukaryotic communities. These patterns were not found for PICRUSt predicted prokaryotic functions, thus indicating some degree of functional redundancy. Eukaryotes presented a greater potential for their use as PAH contamination biomarkers, owing to their stronger response at both regional and continental scales. PMID:27594854

Monitoring Sediment Size Distributions in a Regulated Gravel-Bed Coastal Stream

NASA Astrophysics Data System (ADS)

O'Connor, M. D.; Lewis, J.; Andrew, G.

2014-12-01

Lagunitas Creek drains 282 km2 in coastal Marin County, California. The watershed contains water supply reservoirs, urban areas, parks and habitat for threatened species (e.g. coho salmon). Water quality is impaired by excess fine sediment, and a plan to improve water quality (i.e. TMDL) was adopted by State authorities in 2014. The TMDL asserts changes in sediment delivery, transport, and storage contributed to the decline of coho. A sediment source analysis found a 2x increase in sediment supply. Concentrations of sand and fine gravel in the channel are elevated and, during high flows, more mobile. The Federal Coho Salmon Recovery Plan (2012) describes sediment conditions affecting coho habitat as "fair". Reservoir managers were directed by the State in 1995 to reduce sedimentation and improve riparian vegetation and woody debris to improve fish habitat. Prior sediment monitoring found variability related primarily to intense winter runoff without identifying clear trends. A new sediment monitoring program was implemented in 2012 for ongoing quantification of sediment conditions. The goal of monitoring is to determine with specified statistical certainty changes in sediment conditions over time and variation among reaches throughout the watershed. Conditions were compared in 3 reaches of Lagunitas Cr. and 2 tributaries. In each of the 5 channel reaches, 4 shorter reaches were sampled in a systematic grid comprised of 30 cross-channel transects spaced at intervals of 1/2 bankfull width and 10 sample points per transect; n=1200 in 5 channel reaches. Sediment diameter class (one clast), sediment facies (a patch descriptor), and habitat type were observed at each point. Fine sediment depth was measured by probing the thickness of the deposit, providing a means to estimate total volume of fine sediment and a measure of rearing habitat occupied by fine sediment (e.g. V*). Sub-surface sediment samples were collected and analyzed for size distribution at two scales: a

Coastal eutrophication thresholds: a matter of sediment microbial processes.

PubMed

Lehtoranta, Jouni; Ekholm, Petri; Pitkänen, Heikki

2009-09-01

In marine sediments, the major anaerobic mineralization processes are Fe(III) oxide reduction and sulfate reduction. In this article, we propose that the two alternative microbial mineralization pathways in sediments exert decisively different impacts on aquatic ecosystems. In systems where iron reduction dominates in the recently deposited sediment layers, the fraction of Fe(III) oxides that is dissolved to Fe(II) upon reduction will ultimately be transported to the oxic layer, where it will be reoxidized. Phosphorus, which is released from Fe(III) oxides and decomposing organic matter from the sediment, will be largely trapped by this newly formed Fe(III) oxide layer. Consequently, there are low concentrations of phosphorus in near-bottom and productive water layers and primary production tends to be limited by phosphorus (State 1). By contrast, in systems where sulfate reduction dominates, Fe(III) oxides are reduced by sulfides. This chemical reduction leads to the formation and permanent burial of iron as solid iron sulfides that are unable to capture phosphorus. In addition, the cycling of iron is blocked, and phosphorus is released to overlying water. Owing to the enrichment of phosphorus in water, the nitrogen : phosphorus ratio is lowered and nitrogen tends to limit algal growth, giving an advantage to nitrogen-fixing blue-green algae (State 2). A major factor causing a shift from State 1 to State 2 is an increase in the flux of labile organic carbon to the bottom sediments; upon accelerating eutrophication a critical point will be reached when the availability of Fe(III) oxides in sediments will be exhausted and sulfate reduction will become dominant. Because the reserves of Fe(III) oxides are replenished only slowly, reversal to State 1 may markedly exceed the time needed to reduce the flux of organic carbon to the sediment. A key factor affecting the sensitivity of a coastal system to such a regime shift is formed by the hydrodynamic alterations that

Community and functional shifts in ammonia oxidizers across terrestrial and marine (soil/sediment) boundaries in two coastal Bay ecosystems.

PubMed

Zhang, Li-Mei; Duff, Aoife M; Smith, Cindy J

2018-04-24

Terrestrial-marine boundaries are significant sites of biogeochemical activity with delineated gradients from land to sea. While niche differentiation of ammonia-oxidizing archaea (AOA) and bacteria (AOB) driven by pH and nitrogen is well known, the patterns and environmental drivers of AOA and AOB community structure and activity across soil-sediment boundaries have not yet been determined. In this study, nitrification potential rate, community composition and transcriptional activity of AOA and AOB in soil, soil/sediment interface and sediments of two coastal Bays were characterized using a combination of field investigations and microcosm incubations. At DNA level, amoA gene abundances of AOA were significantly greater than AOB in soil, while in sediments AOB were significantly more abundant than AOA, but at the soil/sediment interface there were equal numbers of AOA and AOB amoA genes. Microcosm incubations provided further evidence, through qPCR and DGGE-sequencing analysis of amoA transcripts, that AOA were active in soil, AOB in sediment and both AOA and AOB were active at the soil/sediment interface. The AOA and AOB community composition shifted across the coastal soil-interface-sediment gradient with salinity and pH identified as major environmental drivers. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Development and Application of a Cohesive Sediment Transport Model in Coastal Louisiana

NASA Astrophysics Data System (ADS)

Sorourian, S.; Nistor, I.

2017-12-01

The Louisiana coast has suffered from rapid land loss due to the combined effects of increasing the rate of eustatic sea level rise, insufficient riverine sediment input and subsidence. The sediment in this region is dominated by cohesive sediments (up to 80% of clay). This study presents a new model for calculating suspended sediment concentration (SSC) of cohesive sediments. Several new concepts are incorporated into the proposed model, which is capable of estimating the spatial and temporal variation in the concentration of cohesive sediment. First, the model incorporates the effect of electrochemical forces between cohesive sediment particles. Second, the wave friction factor is expressed in terms of the median particle size diameter in order to enhance the accuracy of the estimation of bed shear stress. Third, the erosion rate of cohesive sediments is also expressed in time-dependent form. Simulated SSC profiles are compared with field data collected from Vermilion Bay, Louisiana. The results of the proposed model agree well with the experimental data, as soon as steady state condition is achieved. The results of the new numerical models provide a better estimation of the suspended sediment concentration profile compared to the initial model developed by Mehta and Li, 2003. Among the proposed developments, the formulation of a time-dependent erosion rate shows the most accurate results. Coupling of present model with the Finite-Volume, primitive equation Community Ocean Model (FVCOM) would shed light on the fate of fine-grained sediments in order to increase overall retention and restoration of the Louisiana coastal plain.

Assessing sediment quality in the Great Lakes Connecting Channels using National Coastal Condition Assessment protocol

EPA Science Inventory

The EPA Office of Water’s National Coastal Condition Assessment (NCCA) helps satisfy the assessment and antidegradation provisions of the Clean Water Actby estimating water, sediment, and benthic quality conditions in the Great Lakes nearshore on a five-year cycle starting ...

Impact of electron acceptor availability on the anaerobic oxidation of methane in coastal freshwater and brackish wetland sediments

NASA Astrophysics Data System (ADS)

Segarra, Katherine E. A.; Comerford, Christopher; Slaughter, Julia; Joye, Samantha B.

2013-08-01

Methane, a powerful greenhouse gas, is both produced and consumed in anoxic coastal sediments via microbial processes. Although the anaerobic oxidation of methane (AOM) is almost certainly an important process in coastal freshwater and salt marsh sediments, the factors that control the rates and pathways of AOM in these habitats are poorly understood. Here, we present the first direct measurements of AOM activity in freshwater (0 PSU) and brackish (25 PSU) wetland sediments. Despite disparate sulfate concentrations, both environments supported substantial rates of AOM. Higher sulfate reduction (SR) rates were measured in the freshwater site and SR at both sites was of sufficient magnitude to support the observed AOM activity. Laboratory incubations of freshwater and brackish tidal, wetland sediments amended with either nothing [control], sulfate, nitrate, manganese oxide (birnessite) or iron oxide (ferrihydrite) and supplied with a methane headspace were used to evaluate the impact(s) of electron acceptor availability on potential AOM rates. Maximum AOM rates in brackish slurries occurred in the sulfate amendments. In contrast, addition of sulfate and several possible electron acceptors to the freshwater slurries decreased AOM rates relative to the control. High ratios of AOM activity relative to SR activity in the nitrate, birnessite, and ferrihydrite treatments of both the brackish and freshwater slurries provided evidence of AOM decoupled from SR. This study demonstrates that both freshwater and brackish coastal wetland sediments support considerable rates of anaerobic methanotrophy and provides evidence for sulfate-independent AOM that may be coupled to nitrate, iron, or manganese reduction in both environments.

Optimization of biostimulant for bioremediation of contaminated coastal sediment by response surface methodology (RSM) and evaluation of microbial diversity by pyrosequencing.

PubMed

Subha, Bakthavachallam; Song, Young Chae; Woo, Jung Hui

2015-09-15

The present study aims to optimize the slow release biostimulant ball (BSB) for bioremediation of contaminated coastal sediment using response surface methodology (RSM). Different bacterial communities were evaluated using a pyrosequencing-based approach in contaminated coastal sediments. The effects of BSB size (1-5cm), distance (1-10cm) and time (1-4months) on changes in chemical oxygen demand (COD) and volatile solid (VS) reduction were determined. Maximum reductions of COD and VS, 89.7% and 78.8%, respectively, were observed at a 3cm ball size, 5.5cm distance and 4months; these values are the optimum conditions for effective treatment of contaminated coastal sediment. Most of the variance in COD and VS (0.9291 and 0.9369, respectively) was explained in our chosen models. BSB is a promising method for COD and VS reduction and enhancement of SRB diversity. Copyright © 2015 Elsevier Ltd. All rights reserved.

Phylogenetic diversity of microorganisms in subseafloor crustal fluids from Holes 1025C and 1026B along the Juan de Fuca Ridge flank

PubMed Central

Jungbluth, Sean P.; Lin, Huei-Ting; Cowen, James P.; Glazer, Brian T.; Rappé, Michael S.

2014-01-01

To expand investigations into the phylogenetic diversity of microorganisms inhabiting the subseafloor biosphere, basalt-hosted crustal fluids were sampled from Circulation Obviation Retrofit Kits (CORKs) affixed to Holes 1025C and 1026B along the Juan de Fuca Ridge (JdFR) flank using a clean fluid pumping system. These boreholes penetrate the crustal aquifer of young ocean crust (1.24 and 3.51 million years old, respectively), but differ with respect to borehole depth and temperature at the sediment-basement interface (147 m and 39°C vs. 295 m and 64°C, respectively). Cloning and sequencing of PCR-amplified small subunit ribosomal RNA genes revealed that fluids retrieved from Hole 1025C were dominated by relatives of the genus Desulfobulbus of the Deltaproteobacteria (56% of clones) and Candidatus Desulforudis of the Firmicutes (17%). Fluids sampled from Hole 1026B also contained plausible deep subseafloor inhabitants amongst the most abundant clone lineages; however, both geochemical analysis and microbial community structure reveal the borehole to be compromised by bottom seawater intrusion. Regardless, this study provides independent support for previous observations seeking to identify phylogenetic groups of microorganisms common to the deep ocean crustal biosphere, and extends previous observations by identifying additional lineages that may be prevalent in this unique environment. PMID:24723917

Assessment of arsenic in coastal sediments, seawaters and molluscs in the Tarut Island, Arabian Gulf, Saudi Arabia

NASA Astrophysics Data System (ADS)

El-Sorogy, Abdelbaset S.; Youssef, Mohamed; Al-Kahtany, Khaled; Al-Otaiby, Naif

2016-01-01

In order to assess arsenic on the Tarut coast, Saudi Arabian Gulf, 38 sediment samples, 26 seawater samples and 40 gastropod and bivalve specimens were collected for analyses by Inductively Coupled Plasma-Mass Spectrometer. The Enrichment Factor (EF), the Geoaccumulation Index (Igeo) and the Contamination Factor (CF) indicated that coastal sediments of Tarut Island are severely enriched, strongly polluted and very highly contaminated with arsenic as a result of anthropogenic inputs. Comparison with arsenic in coastal sediments, seawaters and molluscs in the Red Sea, the Arabian Gulf and abroad coasts suggested that the studied samples have higher concentrations of As. The suggested natural sources of arsenic in the study area are the weathering and decomposition of neighboring deserts. The anthropogenic sources include the land reclamation, petrochemical industries, boat exhaust emissions, oil leakage, desalination plants and sewage effluents. These anthropogenic sources are the dominant sources of As in the study area and mostly came from Al Jubail industrial city to the north.

Integrative assessment of coastal pollution: Development and evaluation of sediment quality criteria from chemical contamination and ecotoxicological data

NASA Astrophysics Data System (ADS)

Bellas, Juan; Nieto, Óscar; Beiras, Ricardo

2011-04-01

Elutriate embryo-larval bioassays with sea-urchins ( Paracentrotus lividus) were conducted concurrently with chemical analyses of sediments and biota as part of an integrative assessment of pollution in highly productive coastal regions. High metal contents and organic compounds in sediments and mussels were found in localised areas from the inner part of the estuaries indicating a clear anthropogenic influence. In particular, average maximum concentrations of 2803 mg Cu/kg dw, 776 mg Pb/kg dw, 2.5 mg Hg/kg dw and 5803 μg ∑ 7PAHs/kg dw were measured in sediments from the most polluted sites. Significant correlations were observed between sediment chemistry and toxicity bioassays. Moreover, the Mantel test revealed a significant correlation ( rM=0.80; p<0.01) between sediment pollutant concentrations and toxicity data profiles. In addition, sediment quality criteria were used to help in the ecological interpretation of sediment chemistry data and to identify pollutants of concern. The toxicity bioassays identified polluted sites and quantified the level of toxicity, providing a cost-effective tool to complement the routine chemical monitoring currently conducted in European coastal waters with ecologically relevant information. This is in line with the recent European legislation that advocates the use of biological tools with the ultimate aim of protecting marine resources from anthropogenic substances that will affect their sensitive early life stages.

Polycyclic aromatic hydrocarbon contamination in stormwater detention pond sediments in coastal South Carolina.

PubMed

Weinstein, John E; Crawford, Kevin D; Garner, Thomas R

2010-03-01

The purpose of this study was to characterize the polycyclic aromatic hydrocarbon (PAH) contamination in the sediments of stormwater detention ponds in coastal South Carolina. Levels of the sum of PAH analytes were significantly higher in the sediments of commercial ponds compared to that of reference, golf course, low-density residential, and high-density residential ponds. Isomer ratio analysis suggested that the predominant source of PAHs were pyrogenic; however, many ponds had a PAH signature consistent with mixed uncombusted and combusted PAH sources. PAH levels in these sediments could be modeled using both pond drainage area and pond surface area. These results demonstrate that the sediment from most commercial ponds, and a few residential and golf course ponds, were moderately contaminated with PAHs. PAH levels in these contaminated ponds exceeded between 42% and 75% of the ecological screening values for individual PAH analytes established by US EPA Region IV, suggesting that they may pose a toxicological risk to wildlife.

Sediment Quality in Near Coastal Waters of the Gulf of Mexico: Influence of Hurricane Katrina

EPA Science Inventory

The results from this study represent a synoptic analysis of sediment quality in coastal waters of Lake Pontchartrain and Mississippi Sound two months after the landfall of Hurricane Katrina. Post-hurricane conditions were compared to pre-hurricane (2000-2004) conditions, for se...

Size and Carbon Content of Sub-seafloor Microbial Cells at Landsort Deep, Baltic Sea

PubMed Central

Braun, Stefan; Morono, Yuki; Littmann, Sten; Kuypers, Marcel; Aslan, Hüsnü; Dong, Mingdong; Jørgensen, Bo B.; Lomstein, Bente Aa.

2016-01-01

The discovery of a microbial ecosystem in ocean sediments has evoked interest in life under extreme energy limitation and its role in global element cycling. However, fundamental parameters such as the size and the amount of biomass of sub-seafloor microbial cells are poorly constrained. Here we determined the volume and the carbon content of microbial cells from a marine sediment drill core retrieved by the Integrated Ocean Drilling Program (IODP), Expedition 347, at Landsort Deep, Baltic Sea. To determine their shape and volume, cells were separated from the sediment matrix by multi-layer density centrifugation and visualized via epifluorescence microscopy (FM) and scanning electron microscopy (SEM). Total cell-carbon was calculated from amino acid-carbon, which was analyzed by high-performance liquid chromatography (HPLC) after cells had been purified by fluorescence-activated cell sorting (FACS). The majority of microbial cells in the sediment have coccoid or slightly elongated morphology. From the sediment surface to the deepest investigated sample (~60 m below the seafloor), the cell volume of both coccoid and elongated cells decreased by an order of magnitude from ~0.05 to 0.005 μm3. The cell-specific carbon content was 19–31 fg C cell−1, which is at the lower end of previous estimates that were used for global estimates of microbial biomass. The cell-specific carbon density increased with sediment depth from about 200 to 1000 fg C μm−3, suggesting that cells decrease their water content and grow small cell sizes as adaptation to the long-term subsistence at very low energy availability in the deep biosphere. We present for the first time depth-related data on the cell volume and carbon content of sedimentary microbial cells buried down to 60 m below the seafloor. Our data enable estimates of volume- and biomass-specific cellular rates of energy metabolism in the deep biosphere and will improve global estimates of microbial biomass. PMID:27630628

Prevalence of the Ancient Wood-Ljungdahl Pathway in a Subseafloor Olivine Community

NASA Astrophysics Data System (ADS)

Smith, A. R.; Mueller, R.; Fisk, M. R.; Mason, O. U.; Popa, R.; Kieft, B.; Colwell, F. S.

2018-05-01

The ancient Wood-Ljungdahl pathway used for biosynthesis and energy generation was found to be the predominant metabolic pathway in a microbial community from olivine grains incubated in the Juan de Fuca subseafloor aquifer.

Sediment transport in the San Francisco Bay Coastal System: An overview

USGS Publications Warehouse

Barnard, Patrick L.; Schoellhamer, David H.; Jaffe, Bruce E.; Lester J. McKee,

2013-01-01

The papers in this special issue feature state-of-the-art approaches to understanding the physical processes related to sediment transport and geomorphology of complex coastal-estuarine systems. Here we focus on the San Francisco Bay Coastal System, extending from the lower San Joaquin-Sacramento Delta, through the Bay, and along the adjacent outer Pacific Coast. San Francisco Bay is an urbanized estuary that is impacted by numerous anthropogenic activities common to many large estuaries, including a mining legacy, channel dredging, aggregate mining, reservoirs, freshwater diversion, watershed modifications, urban run-off, ship traffic, exotic species introductions, land reclamation, and wetland restoration. The Golden Gate strait is the sole inlet connecting the Bay to the Pacific Ocean, and serves as the conduit for a tidal flow of ~ 8 x 109 m3/day, in addition to the transport of mud, sand, biogenic material, nutrients, and pollutants. Despite this physical, biological and chemical connection, resource management and prior research have often treated the Delta, Bay and adjacent ocean as separate entities, compartmentalized by artificial geographic or political boundaries. The body of work herein presents a comprehensive analysis of system-wide behavior, extending a rich heritage of sediment transport research that dates back to the groundbreaking hydraulic mining-impact research of G.K. Gilbert in the early 20th century.

Distribution of mercury in molluscs, seawaters and coastal sediments of Tarut Island, Arabian Gulf, Saudi Arabia

NASA Astrophysics Data System (ADS)

Youssef, Mohamed; El-Sorogy, Abdelbaset; Al-Kahtany, Khaled

2016-12-01

In order to assess the distribution of mercury along the Tarut coast, Arabian Gulf, Thirty eight (38) sediment samples, twenty six (26) seawater samples, and forty (40) Mollusca specimens were collected from the Tarut coast. The concentrations of Mercury in the sediments of the studied area (average = 0.55 μg/g) are generally high comparing to the reported values from the Gulf of Oman, Red Sea, and the Gulf of Finland. The concentrations of Hg exceeded the wet threshold safety values (median effect concentration (MEC), and probable effect concentration (PEC) indicating possible Hg contamination. According to the Swedish Environmental Protection Agency (SEPA), thirty four (34) samples occur in class 4 and four (4) samples occur in class 5, which means that the sediments of the Tarut Island are largely contaminated with Hg. Enrichment factor (EF) results (average = 1.76) suggested that, the coastal sediments of the Tarut Island are considered to entirely originate from the crustal materials or natural processes. The studied sediments show lower values (Igeo<0) indicating that the sediments are unpolluted. These sediments according to contamination factor (Cf) are considered contaminated with Hg (1 < CF < 3). The Hg concentration in water samples (average = 30 μg/g) considered high. Comparison with Hg contents in coastal sediments, seawaters and molluscs in the Red Sea, the Arabian Gulf suggested that the studied samples have higher concentrations of Hg. The suggested natural sources of Hg in the study area are the weathering and decomposition of neighboring deserts. The anthropogenic sources are the land reclamation, petrochemical industries, boat exhaust emissions, oil leakage, desalination plants and sewage effluents exceeded in the study area and in Al Jubail industrial city to the north.

The dirt on sediments

USGS Publications Warehouse

Smith, Loren M.; Euliss, Ned H. "Chip"

2010-01-01

In the wetland science field, sediment deposition is often thought of as being beneficial especially when one thinks of coastal estuarine systems. For example, sediments deposited from streams and rivers are necessary to naturally build and maintain tidal marshes. These sediments come from eroded upland soils in the interior of the continent. When these sediments are diverted from natural coastal deposition areas, such as occurs from river channelization, we lose marshes through subsidence as is happening throughout coastal Louisiana. However, the value of eroded soils is all a matter of hydrogeomorphic perspective.

Determination of Irgarol-1051 and its related s-triazine species in coastal sediments and mussel tissues by HPLC-ESI-MS/MS.

PubMed

Tsang, Vic Wing-Hang; Lei, Ngai-Yu; Lam, Michael Hon-Wah

2009-10-01

A mild, low-temperature analytical approach based on sonication assisted extraction coupled with HPLC electrospray ionization triple quadrupole tandem mass spectrometry has been developed for the simultaneous qualitative and quantitative determination of the four Irgarol-related s-triazine species, namely Irgarol-1051, M1, M2 and M3, in coastal sediments and Green-lipped mussel samples. Mild extraction conditions were necessary for the preservation of the thermally unstable M2. The Multiple Reaction Monitoring (MRM) mode of detection by ESI-MS/MS enabled reliable qualitative identification and sensitive quantitative determination of those s-triazines. This determination method was applied to evaluate the degree of Irgarol-1051 contamination in the sediments and biota of the coastal environment of Hong Kong--one of the busiest maritime ports in the world. All the four s-triazine species were observed in all of the samples. This is the first time that the newly identified M2 and M3 are detected in coastal sediments and biota tissues.

PERIPHYTON AND SEDIMENT BIOASSESSMENT AS INDICATORS OF THE EFFECT OF A COASTAL PULP MILL WASTEWATER

EPA Science Inventory

A two year study was conducted near Port St. Joe, Florida, in a coastal transportation canal and bay receiving combined municipal and pulp mill wastewater. The objective of the study was to determine the effectiveness of periphyton analysis techniques and sediment toxicity as ind...

Marinilactibacillus piezotolerans sp. nov., a novel marine lactic acid bacterium isolated from deep sub-seafloor sediment of the Nankai Trough.

PubMed

Toffin, Laurent; Zink, Klaus; Kato, Chiaki; Pignet, Patricia; Bidault, Adeline; Bienvenu, Nadège; Birrien, Jean-Louis; Prieur, Daniel

2005-01-01

A piezotolerant, mesophilic, marine lactic acid bacterium (strain LT20T) was isolated from a deep sub-seafloor sediment core collected at Nankai Trough, off the coast of Japan. Cells were Gram-positive, rod-shaped, non-sporulating and non-motile. The NaCl concentration range for growth was 0-120 g l(-1), with the optimum at 10-20 g l(-1). The temperature range for growth at pH 7.0 was 4-50 degrees C, with the optimum at 37-40 degrees C. The optimum pH for growth was 7.0-8.0. The optimum pressure for growth was 0.1 MPa with tolerance up to 30 MPa. The main cellular phospholipids were phosphatidylglycerols (25 %), diphosphatidylglycerols (34 %) and a group of compounds tentatively identified as ammonium-containing phosphatidylserines (32 %); phosphatidylethanolamines (9 %) were minor components. The fatty acid composition was dominated by side chains of 16 : 0, 14 : 0 and 16 : 1. The G+C content of the genomic DNA was 42 mol%. On the basis of 16S rRNA gene sequence analysis and the secondary structure of the V6 region, this organism was found to belong to the genus Marinilactibacillus and was closely related to Marinilactibacillus psychrotolerans M13-2(T) (99 %), Marinilactibacillus sp. strain MJYP.25.24 (99 %) and Alkalibacterium olivapovliticus strain ww2-SN4C (97 %). Despite the high similarity between their 16S rRNA gene sequences (99 %), the DNA-DNA hybridization levels were less than 20 %. On the basis of physiological and genetic characteristics, it is proposed that this organism be classified as a novel species, Marinilactibacillus piezotolerans sp. nov. The type strain is LT20T (=DSM 16108T=JCM 12337T).

Toxic heavy metals in sediments, seawater, and molluscs in the eastern and western coastal waters of Guangdong Province, South China.

PubMed

Zhang, Ling; Shi, Zhen; Zhang, Jingping; Jiang, Zhijian; Wang, Fei; Huang, Xiaoping

2016-05-01

Heavy metal concentrations and distribution were studied in sediments, seawater, and molluscs, and the possible heavy metal sources in the coastal waters of Guangdong Province, South China were discussed. The results showed that the concentrations of Cu, Pb, Zn, and Cr in sediments in eastern coastal waters were generally higher than those in the western coastal waters. However, concentrations of most metals in seawater and molluscs in western waters were higher than in the eastern waters, which was tightly related to the local economics and urbanization development, especially, the different industrial structure in two regions. The main heavy metal sources were attributed to the industrial and agricultural effluent, domestic sewage, and even waste gas. Furthermore, heavy metal contamination assessment indicated that high contamination levels of Cd, Zn, and Pb occurred in sediments in local areas, especially in the bays and harbors. The metal accumulation levels by molluscs ranked following the order of Cd > Cu > As > Zn > Pb > Cr, and the ecological risks introduced by heavy metals in different areas were in the order of Zhanjiang > Yangmao > Shantou > Shanhui.

Contrasting landscape influences on sediment supply and stream restoration priorities in northern Fennoscandia (Sweden and Finland) and coastal British Columbia.

PubMed

Rosenfeld, Jordan; Hogan, Daniel; Palm, Daniel; Lundquist, Hans; Nilsson, Christer; Beechie, Timothy J

2011-01-01

Sediment size and supply exert a dominant control on channel structure. We review the role of sediment supply in channel structure, and how regional differences in sediment supply and land use affect stream restoration priorities. We show how stream restoration goals are best understood within a common fluvial geomorphology framework defined by sediment supply, storage, and transport. Land-use impacts in geologically young landscapes with high sediment yields (e.g., coastal British Columbia) typically result in loss of in-stream wood and accelerated sediment inputs from bank erosion, logging roads, hillslopes and gullies. In contrast, northern Sweden and Finland are landscapes with naturally low sediment yields caused by low relief, resistant bedrock, and abundant mainstem lakes that act as sediment traps. Land-use impacts involved extensive channel narrowing, removal of obstructions, and bank armouring with boulders to facilitate timber floating, thereby reducing sediment supply from bank erosion while increasing export through higher channel velocities. These contrasting land-use impacts have pushed stream channels in opposite directions (aggradation versus degradation) within a phase-space defined by sediment transport and supply. Restoration in coastal British Columbia has focused on reducing sediment supply (through bank and hillslope stabilization) and restoring wood inputs. In contrast, restoration in northern Fennoscandia (Sweden and Finland) has focused on channel widening and removal of bank-armouring boulders to increase sediment supply and retention. These contrasting restoration priorities illustrate the consequences of divergent regional land-use impacts on sediment supply, and the utility of planning restoration activities within a mechanistic sediment supply-transport framework.

Mineralization of RDX-derived nitrogen to N2 via denitrification in coastal marine sediments.

PubMed

Smith, Richard W; Tobias, Craig; Vlahos, Penny; Cooper, Christopher; Ballentine, Mark; Ariyarathna, Thivanka; Fallis, Stephen; Groshens, Thomas J

2015-02-17

Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a common constituent of military explosives. Despite RDX contamination at numerous U.S. military facilities and its mobility to aquatic systems, the fate of RDX in marine systems remains largely unknown. Here, we provide RDX mineralization pathways and rates in seawater and sediments, highlighting for the first time the importance of the denitrification pathway in determining the fate of RDX-derived N. (15)N nitro group labeled RDX ((15)N-[RDX], 50 atom %) was spiked into a mesocosm simulating shallow marine conditions of coastal Long Island Sound, and the (15)N enrichment of N2 (δ(15)N2) was monitored via gas bench isotope ratio mass spectrometry (GB-IRMS) for 21 days. The (15)N tracer data were used to model RDX mineralization within the context of the broader coastal marine N cycle using a multicompartment time-stepping model. Estimates of RDX mineralization rates based on the production and gas transfer of (15)N2O and (15)N2 ranged from 0.8 to 10.3 μmol d(-1). After 22 days, 11% of the added RDX had undergone mineralization, and 29% of the total removed RDX-N was identified as N2. These results demonstrate the important consideration of sediment microbial communities in management strategies addressing cleanup of contaminated coastal sites by military explosives.

PAHs and PCBs deposited in surficial sediments along a rural to urban transect in a mid-Atlantic coastal river basin (USA).

PubMed

Foster, Gregory D; Cui, Vickie

2008-10-01

PAHs and PCBs were measured in river sediments along a 226 km longitudinal transect that spanned rural to urban land use settings through Valley and Ridge, Piedmont Plateau and Coastal Plain physiographic provinces in the Potomac River basin (mid-Atlantic USA). A gradient in PAH concentrations was found in river bed sediments along the upstream transect in the Potomac and Shenandoah Rivers that correlated with population densities in the nearby sub-basins. Sediment PAH concentrations halved per each approximately 40 km of transect distance upstream (i.e., the half-concentration distance) from the urban center (Washington, DC) of the Potomac River basin in direct proportion to population density. The PAH molecular composition was consistent across all geologic provinces, revealing a dominant pyrogenic source. Fluoranthene to perylene ratios served as useful markers for urban inputs, with a ratio > 2.4 observed in sediments near urban structures such as roadways, bridges and sewer outfalls. PCBs in sediments were not well correlated with population densities along the river basin transect, but the highest concentrations were found in the urban Coastal Plain region near Washington, DC and in the Shenandoah River near a known industrial Superfund site. PAHs were moderately correlated with sediment total organic carbon (TOC) in the Shenandoah River and Coastal Plain Potomac River regions, but TOC was poorly correlated with PCB concentrations throughout the entire basin. Although both PAHs and PCBs are widely recognized as urban-derived contaminants, their concentration profiles and geochemistry in river sediments were uniquely different throughout the upper Potomac River basin.

Anaerobic Methane-Oxidizing Microbial Community in a Coastal Marine Sediment: Anaerobic Methanotrophy Dominated by ANME-3.

PubMed

Bhattarai, Susma; Cassarini, Chiara; Gonzalez-Gil, Graciela; Egger, Matthias; Slomp, Caroline P; Zhang, Yu; Esposito, Giovanni; Lens, Piet N L

2017-10-01

The microbial community inhabiting the shallow sulfate-methane transition zone in coastal sediments from marine Lake Grevelingen (The Netherlands) was characterized, and the ability of the microorganisms to carry out anaerobic oxidation of methane coupled to sulfate reduction was assessed in activity tests. In vitro activity tests of the sediment with methane and sulfate demonstrated sulfide production coupled to the simultaneous consumption of sulfate and methane at approximately equimolar ratios over a period of 150 days. The maximum sulfate reduction rate was 5 μmol sulfate per gram dry weight per day during the incubation period. Diverse archaeal and bacterial clades were retrieved from the sediment with the majority of them clustered with Euryarchaeota, Thaumarcheota, Bacteroidetes, and Proteobacteria. The 16S rRNA gene sequence analysis showed that the sediment from marine Lake Grevelingen contained anaerobic methanotrophic Archaea (ANME) and methanogens as archaeal clades with a role in the methane cycling. ANME at the studied site mainly belong to the ANME-3 clade. This study provides one of the few reports for the presence of ANME-3 in a shallow coastal sediment. Sulfate-reducing bacteria from Desulfobulbus clades were found among the sulfate reducers, however, with very low relative abundance. Desulfobulbus has previously been commonly found associated with ANME, whereas in our study, ANME-3 and Desulfobulbus were not observed simultaneously in clusters, suggesting the possibility of independent AOM by ANME-3.

Dynamic behaviour of coastal sedimentation in the Lions Gulf. [France

NASA Technical Reports Server (NTRS)

Guy, M. (Principal Investigator)

1974-01-01

The author has identified the following significant results. A number of ERTS-1 images covering this geographical zone were studied and compared with cartographic maps, air photographs, and thermal-IR images. Old and recent sediments leave traces in the landscape which are decoded by interpreting the shapes of the clear zones forming a network against the black background representing water and humid zones. Current sedimentation and its mechanism were investigated. It had been hoped that a regular sequence of images would make it possible to follow the dynamics of the Rhone and the coastal rivers in relation to meteorological conditions. In any event only a small number of images spread over a wide period of time were obtained, and a complete study was therefore impossible. However, in comparing some of the ERTS-1 images certain thermal-IR images and information on the flow of the Rhone provided some clarification of mechanisms associated with river dynamics.

North Pond: a natural observatory for sub-seafloor oxidant supply and metabolic reactions

NASA Astrophysics Data System (ADS)

Ziebis, Wiebke; Ferdelman, Timothy; McManus, James; Muratli, Jesse; Picard, Aude; Schmidt-Schierhorn, Friederike; Stephan, Sebastian; Villinger, Heinrich; Edwards, Katrina J.

2010-05-01

Evidence of upward transport of oxidants from basaltic aquifers to deeply buried sediments has raised questions on microbial respiration and energy cycling within the deep biosphere. Sediment ponds that occur over a vast area of sea floor on the flank of the Mid-Atlantic Ridge maybe ideal observatories to study the role of unsuspected sources of oxidants for sub-seafloor microbial life. The western flank of the Mid-Atlantic Ridge, at 22°45'N is characterized by depressions filled with sediment and surrounded by high relief topography of 7 Ma old basement. The largest depressions are 5 km to 20 km wide and sediment thickness varies but can reach 400 m (Langseth et al. 1992). They are believed to overly recharge zones for the venting of fluids that takes place locally through unsedimented young ocean crust. If we consider the sediments as boundaries overlying the hydrologically active crustal environment, then using profiles of bioactive compounds measured through the sediment layer with the goal to extract information on transport and reactions is an obvious approach to understanding the implications of subsurface transport of oxidants on metabolic activity. Recently obtained deep oxygen profiles obtained during a site survey expedition in February/March of 2009 onboard RV Maria S. Merian to North Pond, one of the larger (70 square km) and best studied sediment ponds, provided proof of this principal. North Pond is the site of the proposed IODP Expedition "677 Mid-Atlantic Microbiology". Investigations included heat-flow, single-channel seismic and bathymetry surveys, as well as gravity coring. Oxygen measurements and pore water sampling (25 cm depth intervals) were performed directly on intact sediment cores, which were subsequently sampled for microbiological analyses, as well as for incubation experiments to test for autotrophic and heterotrophic microbial activity. The entire sediment column down to > 8 m sediment depth contained oxygen. In the central part of

Statistical assessment to magnetic susceptibility and heavy metal data for characterizing the coastal sediment of East coast of Tamilnadu, India.

PubMed

Harikrishnan, N; Chandrasekaran, A; Ravisankar, R; Alagarsamy, R

2018-05-01

A rapid urbanization and industrialization enhances the significant heavy metal pollution in the sediments of coastal area and introduced a serious threat to the human health. In the present study, concentration of heavy metals such as Al, Ti, Fe, V, Cr, Mn, Co, Zn, La, Pb, Mg, Ca, Ni, Cd and Ba are determined in sediments along Periyakalapet to Parangaipettai coastal area, Tamilnadu using energy dispersive X-ray fluorescence spectrometer (EDXRF).These metals have more affinity to establish metallic bond with ferrous material leading to enhancement of sediment magnetic susceptibility. Hence, a magnetic susceptibility (χLF, χHF, χFD) measurement was carried for sediments by using MS2B dual frequency susceptibility meter. Multivariate statistical analysis (Pearson correlation, factor and cluster analysis) was carried out between heavy metals and magnetic susceptibility to assess the anthropogenic impact in the sediments. The study revealed that a magnetic susceptibility measurement is an inexpensive, fast, non-destructive and suitable method to identify the heavy metal pollution sources. Copyright © 2018 Elsevier Ltd. All rights reserved.

Effects of Stormwater Pipe Size and Rainfall on Sediment and Nutrients Delivered to a Coastal Bayou

EPA Science Inventory

Pollutants discharged from stormwater pipes can cause water quality and ecosystem problems in coastal bayous. A study was conducted to characterize sediment and nutrients discharged by small and large (, 20 cm and .20 cm in internal diameters, respectively) pipes under different ...

Numerical Modeling of Coastal Inundation and Sedimentation by Storm Surge, Tides, and Waves at Norfolk, Virginia, USA

DTIC Science & Technology

2012-07-01

hurricanes (tropical) with a 50-year and a 100-year return period, and one winter storm ( extratropical ) occurred in October 1982. There are a total of 15...under the 0-m and 2-m SLR scenarios, respectively. • Tropical and extratropical storms induce extensive coastal inundation around the military...1 NUMERICAL MODELING OF COASTAL INUNDATION AND SEDIMENTATION BY STORM SURGE, TIDES, AND WAVES AT NORFOLK, VIRGINIA, USA Honghai Li 1 , Lihwa Lin 1

The Study of Heavy Metals on Sediment Quality of Kuala Perlis Coastal Area

NASA Astrophysics Data System (ADS)

Zubir, A. A. Ahmad; Saad, F. N. Mohd; Dahalan, F. A.

2018-03-01

The contamination of heavy metals gives bad implications to the aquatic environment. Thus, a study was conducted to assess the sediment quality by using different contamination indices such as Enrichment Factor (EF), Geo-accumulation Index (Igeo), and Pollution Load Index (PLI). Each sediment sample was collected at the surface (0-15cm) at 5 locations based on the land use activity; jetty port (A), seaside restaurant (B), roadside area (C), power plant (D) and residential area (E). All samples were undergoes acid digestion and analyzed with AAS. Four elements identified from the sediment samples which are Cr, Cu, Pb and Zn were used to calculate the respective indices. Results show that, the highest EF value of Pb which categorized as very severe enrichment was at point E. Meanwhile minor enrichment was detected at point B for Cu while Cr and Zn at point A. Based on Igeo value the sediment quality along Kuala Perlis was in the unpolluted-moderately polluted condition (class 1). As for PLI it shows that the sediment of the coastal area is unpolluted (PLI<1). Therefore, this study revealed that, the main contributor of heavy metals in this area is Pb while the sediment quality of Kuala Perlis was in minor pollution condition.

Fine-grained sediment dispersal along the California coast

USGS Publications Warehouse

Warrick, Jonathan A.; Storlazzi, Curt D.

2013-01-01

Fine-grained sediment (silt and clay) enters coastal waters from rivers, eroding coastal bluffs, resuspension of seabed sediment, and human activities such as dredging and beach nourishment. The amount of sediment in coastal waters is an important factor in ocean ecosystem health, but little information exists on both the natural and human-driven magnitudes of fine-grained sediment delivery to the coastal zone, its residence time there, and its transport out of the system—information upon which to base environmental assessments. To help fill these information gaps, the U.S. Geological Survey has partnered with Federal, State, and local agencies to monitor fine-grained sediment dispersal patterns and fate in the coastal regions of California. Results of these studies suggest that the waves and currents of many of the nearshore coastal settings of California are adequately energetic to transport fine-grained sediment quickly through coastal systems. These findings will help with the management and regulation of fine-grained sediment along the U.S. west coast.

Distribution of biologic, anthropogenic, and volcanic constituents as a proxy for sediment transport in the San Francisco Bay Coastal System

USGS Publications Warehouse

McGann, Mary; Erikson, Li H.; Wan, Elmira; Powell, Charles; Maddocks, Rosalie F.; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

Although conventional sediment parameters (mean grain size, sorting, and skewness) and provenance have typically been used to infer sediment transport pathways, most freshwater, brackish, and marine environments are also characterized by abundant sediment constituents of biological, and possibly anthropogenic and volcanic, origin that can provide additional insight into local sedimentary processes. The biota will be spatially distributed according to its response to environmental parameters such as water temperature, salinity, dissolved oxygen, organic carbon content, grain size, and intensity of currents and tidal flow, whereas the presence of anthropogenic and volcanic constituents will reflect proximity to source areas and whether they are fluvially- or aerially-transported. Because each of these constituents have a unique environmental signature, they are a more precise proxy for that source area than the conventional sedimentary process indicators. This San Francisco Bay Coastal System study demonstrates that by applying a multi-proxy approach, the primary sites of sediment transport can be identified. Many of these sites are far from where the constituents originated, showing that sediment transport is widespread in the region. Although not often used, identifying and interpreting the distribution of naturally-occurring and allochthonous biologic, anthropogenic, and volcanic sediment constituents is a powerful tool to aid in the investigation of sediment transport pathways in other coastal systems.

3D Airflow patterns over coastal foredunes: implications for aeolian sediment transport

NASA Astrophysics Data System (ADS)

Jackson, Derek W. T.; Cooper, Andrew G.; Baas, Andreas C. W.; Lynch, Kevin; Beyers, Meiring

2010-05-01

A fundamental criterion for the development of coastal sand dunes is usually highlighted as a significant onshore wind component of the local wind field. The presence of large sand dune systems on coasts where the predominant wind blows offshore is therefore difficult to explain and usually they are attributed to the past occurrence of onshore winds and, by implication, subsequent changes in climate. Recent studies have shown that offshore winds can be deflected or 'steered' by existing dunes so that their direction changes. This can occur to such an extent that a process known as 'flow reversal' can arise, whereby the initially offshore wind actually flows onshore at the beach. This process is important because it can cause sand to be blown from the beach and into the dunes, causing them to grow. This may be central in explaining the presence of extensive dunes on coasts where the dominant wind is offshore, but is also important in how dunes recover after periods of wave erosion during storms. Offshore winds have traditionally been excluded from sediment budget calculations for coastal dunes, but when they do transport sand onshore, this may have been an important oversight leading to significant underestimates of the volume of sand being transported by wind. This work investigates the controls on the processes and the mechanisms involved in deformation of the flow and resulting sediment transport at coastal foredunes in Northern Ireland. We use a combination of field measurement of wind and sediment transport coupled with state-of-the-art aerodynamic modelling using computational fluid dynamics (CFD) and 3-D sonic anemometry. Our working hypothesis is that offshore winds contribute substantially to foredune behaviour on leeside coasts. Preliminary results show strong reverse flow eddies in the seaward side of the foredunes during offshore wind events. These secondary flow reversals have been above velocity threshold and are transport capable. Using CFD modelling

The impact of electrogenic sulfur oxidation on the biogeochemistry of coastal sediments: A field study

NASA Astrophysics Data System (ADS)

van de Velde, Sebastiaan; Lesven, Ludovic; Burdorf, Laurine D. W.; Hidalgo-Martinez, Silvia; Geelhoed, Jeanine S.; Van Rijswijk, Pieter; Gao, Yue; Meysman, Filip J. R.

2016-12-01

Electro-active sediments distinguish themselves from other sedimentary environments by the presence of microbially induced electrical currents in the surface layer of the sediment. The electron transport is generated by metabolic activity of long filamentous cable bacteria, in a process referred to as electrogenic sulfur oxidation (e-SOx). Laboratory experiments have shown that e-SOx exerts a large impact on the sediment geochemistry, but its influence on the in situ geochemistry of marine sediments has not been previously investigated. Here, we document the biogeochemical cycling associated with e-SOx in a cohesive coastal sediment in the North Sea (Station 130, Belgian Coastal Zone) during three campaigns (January, March and May 2014). Fluorescence in situ hybridization showed that cable bacteria were present in high densities throughout the sampling period, and that filaments penetrated up to 7 cm deep in the sediment, which is substantially deeper than previously recorded. High resolution microsensor profiling (pH, H2S and O2) revealed the typical geochemical fingerprint of e-SOx, with a wide separation (up to 4.8 cm) between the depth of oxygen penetration and the depth of sulfide appearance. The metabolic activity of cable bacteria induced a current density of 25-32 mA m-2 and created an electrical field of 12-17 mV m-1 in the upper centimeters of the sediment. This electrical field created an ionic drift, which strongly affected the depth profiles and fluxes of major cations (Ca2+, Fe2+) and anions (SO42-) in the pore water. The strong acidification of the pore water at depth resulted in the dissolution of calcium carbonates and iron sulfides, thus leading to a strong accumulation of iron, calcium and manganese in the pore water. While sulfate accumulated in the upper centimeters, no significant effect of e-SOx was found on ammonium, phosphate and silicate depth profiles. Overall, our results demonstrate that cable bacteria can strongly modulate the

Temperature Limit of the Deep Subseafloor Biosphere in the Nankai Trough Subduction Zone off Cape Muroto (IODP T-Limit Expedition 370)

NASA Astrophysics Data System (ADS)

Morono, Y.; Hauer, V. B.; Inagaki, F.; Kubo, Y.; Maeda, L.; Scientists, E.

2017-12-01

Expedition 370 of the International Ocean Discovery Program (IODP) aimed to explore the limits of life in the deep subseafloor biosphere at a location where elevated heat flow lets temperature increase with sediment depth beyond the known maximum of microbial life ( 120°C) at 1.2 km below the seafloor. Such conditions are met in the protothrust zone of the Nankai Trough off Cape Muroto, Japan, where Site C0023 was established in the vicinity of ODP Sites 808 and 1174 at a water depth of 4776 m using the drilling vessel DV Chikyu. Hole C0023A was cored down to a total depth of 1180 meters below seafloor, offshore sampling and research was combined with simultaneous shore-based investigations at the Kochi Core Center (KCC), and long-term temperature observations were started (Heuer et al., 2017). The primary scientific objectives of Expedition 370 are (a) to detect and investigate the presence or absence of life and biological processes at the biotic-abiotic transition of the deep subseafloor with unprecedented analytical sensitivity and precision; (b) to comprehensively study the factors that control biomass, activity, and diversity of microbial communities; and (c) to elucidate if continuous or episodic flow of fluids containing thermogenic and/or geogenic nutrients and energy substrates support subseafloor microbial communities in the Nankai Trough accretionary complex (Hinrichs et al., 2016). This contribution will highlight the scientific approach of our field-work and preliminary expedition results by shipboard and shorebased activities. Hinrichs K-U, Inagaki F, Heuer VB, Kinoshita M, Morono Y, Kubo Y (2016) Expedition 370 Scientific Prospectus: T-Limit of the Deep Biosphere off Muroto (T-Limit). International Ocean Discovery Program. http://dx.doi.org/10.14379/iodp.sp.370.2016 Heuer VB, Inagaki F, Morono Y, Kubo Y, Maeda L, the Expedition 370 Scientists (2017) Expedition 370 Preliminary Report: Temperature Limit of the Deep Biosphere off Muroto. International

UV filters, ethylhexyl methoxycinnamate, octocrylene and ethylhexyl dimethyl PABA from untreated wastewater in sediment from eastern Mediterranean river transition and coastal zones.

PubMed

Amine, Helmieh; Gomez, Elena; Halwani, Jalal; Casellas, Claude; Fenet, Hélène

2012-11-01

UVF may occur in the aquatic environment through two principal sources: direct inputs from recreational activities and indirect wastewater- and river-borne inputs. The aim of this study was to obtain a first overview of levels of three UVF (EHMC, OC and OD-PABA) in coastal areas subjected to river inputs, untreated wastewater discharges and dumpsite leachates. We selected three eastern Mediterranean rivers that have been impacted for decades by untreated wastewater release and collected sediment in the coastal zone during the hot and humid seasons. Western Mediterranean sites receiving treated wastewaters were analyzed for comparison. The results gave an overview of sediment contamination under these two contrasted situations representative of Mediterranean coastal areas without bathing activities. The analysis of the three UVF revealed the ubiquity and high point source contamination by EHMC and OC in transition and coastal zones, with levels as high as 128 ng g(-1)d.w. OD-PABA was also frequently detected, but at lower concentrations (sediment concentration in the dry period (August and October). Based on these results, we conclude that there is background contamination from river input that could be exacerbated by the direct contribution in coastal bathing zones. Copyright © 2012. Published by Elsevier Ltd.

Suspended sediment concentration and optical property observations of mixed-turbidity, coastal waters through multispectral ocean color inversion

EPA Science Inventory

Multispectral satellite ocean color data from high-turbidity areas of the coastal ocean contain information about the surface concentrations and optical properties of suspended sediments and colored dissolved organic matter (CDOM). Empirical and semi-analytical inversion algorit...

Organic carbon sequestration in coastal sediments across the Baltic Sea over the last 150 years

NASA Astrophysics Data System (ADS)

Ryves, David; Lewis, Jonathan; Rasmussen, Peter; Weckström, Kaarina; Andrén, Elinor; Clarke, Annemarie; Andersen, Thorbjørn; Yang, Handong; Hietanen, Susanah; Jilbert, Tom; Aigars, Juris; Anderson, N. John

2017-04-01

Coastal areas are extremely vulnerable to impacts from changing marine conditions, which are increasingly being driven by human activity (e.g. nutrient cycling, salinity, hydrography, sea level, climate change). Recent research into the complex and dynamic cycling of carbon in many increasingly nutrient-enriched coastal systems has suggested that they have switched from being net C sources to net C sinks over the last 150 years. This study seeks to explore carbon sequestration rates over the last 150 years from several key regions across the coastal Baltic Sea by synthesising organic carbon (OC) inventories from multiple well-dated sedimentary records from Baltic coasts. Such data will provide insight into long-term coastal change and how terrestrial human impact is influencing the ecology and biogeochemistry of the Baltic Sea. To examine past and present rates of carbon burial in key coastal areas of the Baltic Sea, a synthesis of 30-40 sediment cores from across the Baltic Sea is presented here from Baltic Denmark, Germany, Latvia, western Sweden and southern Finland, and are primarily from near-shore and shallow fjord/estuarine sites. The majority of sites span the last 100-150 years and the majority (>75%) are independently dated using 210Pb. Unsupported 210Pb inventories also allow raw sedimentation rates to be corrected for sediment focussing, permitting regionally reliable estimates of OC accumulation rates to be calculated and provide a plausible basis for upscaling OC accumulation rates within these key regions of the Baltic. Preliminary data analyses suggest a major step-change in system behaviour during the 20th century following low, stable ( 10 g OC m-2 yr-1 focussing corrected, OCFC) rates pre-1900. The initial rise in burial rates occurs early in the 1900s though is punctuated by a slight fall during the 1930s/1940s. After 1950, burial rates dramatically rise (consistently up to 45 g OCFC m-2 yr-1; 4 x pre-1900 rates), a pattern which is repeated

Development and evaluation of sediment quality guidelines for Florida coastal waters

USGS Publications Warehouse

MacDonald, Donald D.; Carr, R. Scott; Calder, Fred D.; Long, Edward R.; Ingersoll, Christopher G.

1996-01-01

The weight-of-evidence approach to the development of sediment quality guidelines (SQGs) was modified to support the derivation of biological effects-based SQGs for Florida coastal waters. Numerical SQGs were derived for 34 substances, including nine trace metals, 13 individual polycyclic aromatic hydrocarbons (PAHs), three groups of PAHs, total polychlorinated biphenyls (PCBs), seven pesticides and one phthalate ester. For each substance, a threshold effects level (TEL) and a probable effects level (PEL) was calculated. These two values defined three ranges of chemical concentrations, including those that were (1) rarely, (2) occasionally or (3) frequently associated with adverse effects. The SQGs were then evaluated to determine their degree of agreement with other guidelines (an indicator of comparability) and the percent incidence of adverse effects within each concentration range (an indicator of reliability). The guidelines also were used to classify (using a dichotomous system: toxic, with one or more exceedances of the PELs or non-toxic, with no exceedances of the TELs) sediment samples collected from various locations in Florida and the Gulf of Mexico. The accuracy of these predictions was then evaluated using the results of the biological tests that were performed on the same sediment samples. The resultant SQGs were demonstrated to provide practical, reliable and predictive tools for assessing sediment quality in Florida and elsewhere in the southeastern portion of the United States.

Remote Sensing of Suspended Sediments and Shallow Coastal Waters

NASA Technical Reports Server (NTRS)

Li, Rong-Rong; Kaufman, Yoram J.; Gao, Bo-Cai; Davis, Curtiss O.

2002-01-01

Ocean color sensors were designed mainly for remote sensing of chlorophyll concentrations over the clear open oceanic areas (case 1 water) using channels between 0.4 and 0.86 micrometers. The Moderate Resolution Imaging Spectroradiometer (MODIS) launched on the NASA Terra and Aqua Spacecrafts is equipped with narrow channels located within a wider wavelength range between 0.4 and 2.5 micrometers for a variety of remote sensing applications. The wide spectral range can provide improved capabilities for remote sensing of the more complex and turbid coastal waters (case 2 water) and for improved atmospheric corrections for Ocean scenes. In this article, we describe an empirical algorithm that uses this wide spectral range to identifying areas with suspended sediments in turbid waters and shallow waters with bottom reflections. The algorithm takes advantage of the strong water absorption at wavelengths longer than 1 micrometer that does not allow illumination of sediments in the water or a shallow ocean floor. MODIS data acquired over the east coast of China, west coast of Africa, Arabian Sea, Mississippi Delta, and west coast of Florida are used in this study.

Natural and Human Impacts on the Coastal Environment of Taiwan Recorded in Marine Sediments During the last century

NASA Astrophysics Data System (ADS)

Li, H.; Chen, Z.; Huh, C.; Chen, K.; Lin, Y.; Hsu, F.

2012-12-01

Located at tropical-to-subtropical region on the Pacific rim, Taiwan has very high erosion rate due to steep topography and heavy rainfall especially typhoons. The high sedimentation rates in Taiwan Strait allow us to retrieve high-resolution marine records which reveal natural changes and human impacts on the coastal environment of Taiwan over the past 100 years. Five gravity and box cores well dated by 210Pb and 137Cs methods were analyzed for elemental concentrations in the acid-leachable phase, total organic carbon (TOC), δ13CTOC, δ13C and δ18O of carbonates. The results show that: (1) Positive correlation between TOC and typhoon rainfall since 1940 indicate that decline of vegetation coverage resulted in intensification of soil erosion. The δ13CTOC values illustrate that the organic carbon in the sediments was originated mainly from land input. (2) The δ18O difference between foraminiferal shells and carbonate grains can be used for rainfall reconstruction. (3) The Ca concentrations mainly from carbonates in the sediments were decreased since AD 1940, reflecting changes in sedimentary source and ocean acidfication. As development of the land use, more and more soil erosion caused depletion of authigenic marine sediments in the coast region. Ocean acidification led to less carbonate formation in seawater. (4) Since 1920, Pb concentration rapidly increased and peaked at ~1970 as Pb input from gasoline usage. Pb concentration dropped from 1970 to 1975 perhaps due to unleaded gasoline replacement. (5) In the nearshore environment, heavy metals such as Mn, Cu and Pb in the acid-leachable phase of the sediments strongly increased from 1950 to 1965 then kept relatively high level, reflecting heavy metal contamination from industrial source. The human impact on the coastal region of Taiwan not only caused changes in marine sediments and ocean water, but also disturbed the marine ecosystem. This study has been funded by NSC-100-3113-E-002-009: Study of CO2 capture

eDNA-based bioassessment of coastal sediments impacted by an oil spill.

PubMed

Xie, Yuwei; Zhang, Xiaowei; Yang, Jianghua; Kim, Seonjin; Hong, Seongjin; Giesy, John P; Yim, Un Hyuk; Shim, Won Joon; Yu, Hongxia; Khim, Jong Seong

2018-07-01

Oil spills offshore can cause long-term ecological effects on coastal marine ecosystems. Despite their important ecological roles in the cycling of energy and nutrients in food webs, effects on bacteria, protists or arthropods are often neglected. Environmental DNA (eDNA) metabarcoding was applied to characterize changes in the structure of micro- and macro-biota communities of surface sediments over a 7-year period since the occurrence of Hebei Spirit oil spill on December 7, 2007. Alterations in diversities and structures of micro- and macro-biota were observed in the contaminated area where concentrations of polycyclic aromatic hydrocarbons were greater. Successions of bacterial, protists and metazoan communities revealed long-term ecological effects of residual oil. Residual oil dominated the largest cluster of the community-environment association network. Presence of bacterial families (Aerococcaceae and Carnobacteriaceae) and the protozoan family (Platyophryidae) might have conferred sensitivity of communities to oil pollution. Hydrocarbon-degrading bacterial families (Anaerolinaceae, Desulfobacteraceae, Helicobacteraceae and Piscirickettsiaceae) and algal family (Araphid pennate) were resistant to adverse effects of spilt oil. The protistan family (Subulatomonas) and arthropod families (Folsomia, Sarcophagidae Opomyzoidea, and Anomura) appeared to be positively associated with residual oil pollution. eDNA metabarcoding can provide a powerful tool for assessing effects of anthropogenic pollution, such as oil spills on sediment communities and its long-term trends in coastal marine environments. Copyright © 2018 Elsevier Ltd. All rights reserved.

Distribution of basic sediments (bedload transport) on changes in coastal coastline Donggala, Central Sulawesi Province, Indonesia

NASA Astrophysics Data System (ADS)

Amiruddin

2018-03-01

This study entitled "Distribution of Bedload Transport Against Coastline Changes in Donggala Coast", the formulation of the problem (1) how much of the estimated bedload transport in Donggala Bodies; (2) where were the location of erosion and sedimentation strong point based on the estimation of bed load transport; (3) the extent to which the prediction of shoreline change rate of transport of sediments in coastal areas Donggala. This study aims to: (1) the calculation of estimated bed load transport in Donggala waters; (2) determining the location of the point of erosion and sedimentation strong basis of estimated bedload transport; (3) the prediction of shoreline change rate of transport of sediments in coastal areas Donggala.The survey method used in this research to collect primary data include: (1) decision point waypoint coordinates of each location of measurement; (2) measurement of height, period and direction of the waves; (3) a large measurement of sediment transport; (4) The angle measurement coastline, angle of attack and wave direction, and secondary data include: (1) information from the public; (2) the physical condition data field. The results showed that: (1) general estimate sediment transport base in each location data collection is varied. This is due to the different points of the coastline as well as the angle of attack of the shoreline waters broke Donggala; (2) strong abrasion at the study site occurs at the point Ts4 (622.75 m3/yr) and TS11 (755.25 m3/yr) located in the Village Tosale and point Tw7 and Tw17 (649.25 m3/yr) in Village of Towale. As for the strong sedimentation occurs at the point Ts3 (450.50 m3/yr) located in the Village Tosale and Tg3 point (357.75 m3/yr) located in the Village Tolonggano; (3) of the predicted outcome coastline changes based on the input data estimate sediment transport, beaches and waves parameters is seen that the changes in the location prophyl coastline tends toward research into or undergo a process of

Land-based sources of marine pollution: Pesticides, PAHs and phthalates in coastal stream water, and heavy metals in coastal stream sediments in American Samoa.

PubMed

Polidoro, Beth A; Comeros-Raynal, Mia T; Cahill, Thomas; Clement, Cassandra

2017-03-15

The island nations and territories of the South Pacific are facing a number of pressing environmental concerns, including solid waste management and coastal pollution. Here we provide baseline information on the presence and concentration of heavy metals and selected organic contaminants (pesticides, PAHs, phthalates) in 7 coastal streams and in surface waters adjacent to the Futiga landfill in American Samoa. All sampled stream sediments contained high concentrations of lead, and some of mercury. Several coastal stream waters showed relatively high concentrations of diethyl phthalate and of organophosphate pesticides, above chronic toxicity values for fish and other aquatic organisms. Parathion, which has been banned by the US Environmental Protection Agency since 2006, was detected in several stream sites. Increased monitoring and initiatives to limit non-point source land-based pollution will greatly improve the state of freshwater and coastal resources, as well as reduce risks to human health in American Samoa. Copyright © 2016 Elsevier Ltd. All rights reserved.

Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments.

PubMed

Laverock, Bonnie; Smith, Cindy J; Tait, Karen; Osborn, A Mark; Widdicombe, Steve; Gilbert, Jack A

2010-12-01

Bioturbation is a key process in coastal sediments, influencing microbially driven cycling of nutrients as well as the physical characteristics of the sediment. However, little is known about the distribution, diversity and function of the microbial communities that inhabit the burrows of infaunal macroorganisms. In this study, terminal-restriction fragment length polymorphism analysis was used to investigate variation in the structure of bacterial communities in sediment bioturbated by the burrowing shrimp Upogebia deltaura or Callianassa subterranea. Analyses of 229 sediment samples revealed significant differences between bacterial communities inhabiting shrimp burrows and those inhabiting ambient surface and subsurface sediments. Bacterial communities in burrows from both shrimp species were more similar to those in surface-ambient than subsurface-ambient sediment (R=0.258, P<0.001). The presence of shrimp was also associated with changes in bacterial community structure in surrounding surface sediment, when compared with sediments uninhabited by shrimp. Bacterial community structure varied with burrow depth, and also between individual burrows, suggesting that the shrimp's burrow construction, irrigation and maintenance behaviour affect the distribution of bacteria within shrimp burrows. Subsequent sequence analysis of bacterial 16S rRNA genes from surface sediments revealed differences in the relative abundance of bacterial taxa between shrimp-inhabited and uninhabited sediments; shrimp-inhabited sediment contained a higher proportion of proteobacterial sequences, including in particular a twofold increase in Gammaproteobacteria. Chao1 and ACE diversity estimates showed that taxon richness within surface bacterial communities in shrimp-inhabited sediment was at least threefold higher than that in uninhabited sediment. This study shows that bioturbation can result in significant structural and compositional changes in sediment bacterial communities, increasing

Geostatistical Modeling of the Spatial Distribution of Sediment Oxygen Demand Within a Coastal Plain Blackwater Watershed

USDA-ARS?s Scientific Manuscript database

Blackwater streams of the Georgia Coastal Plain are often listed as impaired due to chronically low DO levels. Previous research has shown that high sediment oxygen demand (SOD) values, a hypothesized cause of lowered DO within these waters, are significantly positively correlated with TOC within th...

Method 440.0 Determination of Carbon and Nitrogen in Sediments and Particulatesof Estuarine/Coastal Waters Using Elemental Analysis

EPA Science Inventory

Elemental analysis is used to determine particulate carbon (PC) and particulate nitrogen (PN) in estuarine and coastal waters and sediment. The method measures the total carbon and nitrogen irrespective of source (inorganic or organic).

Marine coastal sediments microbial hydrocarbon degradation processes: contribution of experimental ecology in the omics’era

PubMed Central

Cravo-Laureau, Cristiana; Duran, Robert

2014-01-01

Coastal marine sediments, where important biological processes take place, supply essential ecosystem services. By their location, such ecosystems are particularly exposed to human activities as evidenced by the recent Deepwater Horizon disaster. This catastrophe revealed the importance to better understand the microbial processes involved on hydrocarbon degradation in marine sediments raising strong interests of the scientific community. During the last decade, several studies have shown the key role played by microorganisms in determining the fate of hydrocarbons in oil-polluted sediments but only few have taken into consideration the whole sediment’s complexity. Marine coastal sediment ecosystems are characterized by remarkable heterogeneity, owning high biodiversity and are subjected to fluctuations in environmental conditions, especially to important oxygen oscillations due to tides. Thus, for understanding the fate of hydrocarbons in such environments, it is crucial to study microbial activities, taking into account sediment characteristics, physical-chemical factors (electron acceptors, temperature), nutrients, co-metabolites availability as well as sediment’s reworking due to bioturbation activities. Key information could be collected from in situ studies, which provide an overview of microbial processes, but it is difficult to integrate all parameters involved. Microcosm experiments allow to dissect in-depth some mechanisms involved in hydrocarbon degradation but exclude environmental complexity. To overcome these lacks, strategies have been developed, by creating experiments as close as possible to environmental conditions, for studying natural microbial communities subjected to oil pollution. We present here a review of these approaches, their results and limitation, as well as the promising future of applying “omics” approaches to characterize in-depth microbial communities and metabolic networks involved in hydrocarbon degradation. In addition

Biomass and decay rates of roots and detritus in sediments of intermittent coastal plain streams

Treesearch

Ken M. Fritz; Jack W. Feminella; Chris Colson; B. Graeme Lockaby; Robin Governo; Robert B. Rummer

2006-01-01

Biomass and breakdown of tree roots within streambed sediments were compared with leaf and wood detritus in three Coastal Plain headwater intermittent streams. Three separate riparian forest treatments were applied: thinned, clearcut, and reference. Biomass of roots (live and dead) and leaf/wood was significantly higher in stream banks than in the channel and declined...

The Deep-Sea and Sub-Seafloor Frontier initiative - a key to link EC research and international scientific ocean drilling

NASA Astrophysics Data System (ADS)

Kopf, A.

2009-04-01

The Deep-Sea and Sub-Seafloor Frontiers project, DS3F, represents the continuation of the DSF roadmap towards the sustainable management of oceanic resources on a European scale. It will develop strategies for sub-seafloor sampling to contribute to a better understanding of deep-sea and sub-seafloor processes by connecting marine research in life and geosciences, climate and environmental change, as well as socio-economic issues and policy building. We propose to establish a long-lived research approach that considers (i) the need for a sustainable management of the ocean, and particularly the deep sea with enhanced activity (fishery, hydrocarbon exploration), (ii) the necessity to unravel deep-seated geological processes that drive seafloor ecosystems, and (iii) the value of seabed archives for the reconstruction of paleo-environmental conditions and the improved prediction of future climate change. Sub-seafloor drilling and sampling can provide two key components in understanding how deep-sea ecosystems function at present, and how they will respond to global change: (a) an inventory of present subsurface processes and biospheres, and their links to surface ecosystems, including seafloor observation and baseline studies, and (b) a high resolution archive of past variations in environmental conditions and biodiversity. For both components, an international effort is needed to share knowledge, methods and technologies, including mission-specific platforms to increase the efficiency, coverage and accuracy of sub-seafloor sampling and exploration. The deep biosphere has been discovered only within the past two decades and comprises the last major frontier for biological exploration. We lack fundamental knowledge of composition, diversity, distribution and metabolism in sub-seafloor biological communities at Earth's extremes, and their repercussions on seafloor ecosystems and life in the deep sea. There is equally an emerging need to shed light on geodynamic processes

A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer

NASA Astrophysics Data System (ADS)

Tully, B. J.; Wheat, C. G.; Glazer, B. T.; Huber, J. A.

2017-12-01

The rock-hosted subseafloor crustal aquifer harbors a reservoir of microbial life that may influence global marine biogeochemical cycles. Here we utilized genomic reconstruction of crustal fluid samples from North Pond, located on the flanks of the Mid-Atlantic Ridge, a site with cold, oxic subseafloor fluid circulation within the upper basement. Twenty-one samples were collected during a two-year period at three different depths and two locations with the basaltic aquifer to examine potential microbial metabolism and community dynamics. We observed minor changes in the geochemical signatures over the two years, yet a dynamic microbial community was present in the crustal fluids that underwent large shifts in the dominant taxonomic groups. An analysis of 195 metagenome-assembled genomes (MAGs) were generated from the dataset and revealed a connection between litho- and autotrophic processes, linking carbon fixation to the oxidation of sulfide, sulfur, thiosulfate, hydrogen, and ferrous iron in a diverse group of microorganisms. Despite oxic conditions, analysis of the MAGs indicated that members of the microbial community were poised to exploit hypoxic or anoxic conditions through the use of microaerobic cytochromes and alternative electron acceptors. Temporal and spatial trends from the MAGs revealed a high degree of functional redundancy that did not correlate with the shifting microbial community membership, suggesting functional stability in mediating subseafloor biogeochemical cycles.

Nutrient fluxes across sediment-water interface in Bohai Bay Coastal Zone, China.

PubMed

Mu, Di; Yuan, Dekui; Feng, Huan; Xing, Fangwei; Teo, Fang Yenn; Li, Shuangzhao

2017-01-30

Sediment cores and overlying water samples were collected at four sites in Tianjin Coastal Zone, Bohai Bay, to investigate nutrient (N, P and Si) exchanges across the sediment-water interface. The exchange fluxes of each nutrient species were estimated based on the porewater profiles and laboratory incubation experiments. The results showed significant differences between the two methods, which implied that molecular diffusion alone was not the dominant process controlling nutrient exchanges at these sites. The impacts of redox conditions and bioturbation on the nutrient fluxes were confirmed by the laboratory incubation experiments. The results from this study showed that the nutrient fluxes measured directly from the incubation experiment were more reliable than that predicted from the porewater profiles. The possible impacts causing variations in the nutrient fluxes include sewage discharge and land reclamation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Heterogeneous distribution in sediments and dispersal in waters of Alexandrium minutum in a semi-enclosed coastal ecosystem.

PubMed

Klouch, Z K; Caradec, F; Plus, M; Hernández-Fariñas, T; Pineau-Guillou, L; Chapelle, A; Schmitt, S; Quéré, J; Guillou, L; Siano, R

2016-12-01

Within the framework of research aimed at using genetic methods to evaluate harmful species distribution and their impact on coastal ecosystems, a portion of the ITS1rDNA of Alexandrium minutum was amplified by real-time PCR from DNA extracts of superficial (1-3cm) sediments of 30 subtidal and intertidal stations of the Bay of Brest (Brittany, France), during the winters of 2013 and 2015. Cell germinations and rDNA amplifications of A. minutum were obtained for sediments of all sampled stations, demonstrating that the whole bay is currently contaminated by this toxic species. Coherent estimations of ITS1rDNA copy numbers were obtained for the two sampling cruises, supporting the hypothesis of regular accumulation of A. minutum resting stages in the south-eastern, more confined embayments of the study area, where fine-muddy sediments are also more abundant. Higher ITS1rDNA copy numbers were detected in sediments of areas where blooms have been seasonally detected since 2012. This result suggests that specific genetic material estimations in superficial sediments of the bay may be a proxy of the cyst banks of A. minutum. The simulation of particle trajectory analyses by a Lagrangian physical model showed that blooms occurring in the south-eastern part of the bay are disconnected from those of the north-eastern zone. The heterogeneous distribution of A. minutum inferred from both water and sediment suggests the existence of potential barriers for the dispersal of this species in the Bay of Brest and encourages finer analyses at the population level for this species within semi-enclosed coastal ecosystems. Copyright © 2016 Elsevier B.V. All rights reserved.

Biogeochemical Insights into B-Vitamins in the Coastal Marine Sediments of San Pedro Basin, CA

NASA Astrophysics Data System (ADS)

Monteverde, D.; Berelson, W.; Baronas, J. J.; Sanudo-Wilhelmy, S. A.

2015-12-01

Coastal marine sediments support a high abundance of mircoorganisms which play key roles in the cycling of nutrients, trace metals, and carbon, yet little is known about many of the cofactors essential for their growth, such as the B-vitamins. The suite of B-vitamins (B1, B2, B6, B7, B12) are essential across all domains of life for both primary and secondary metabolism. Therefore, studying sediment concentrations of B-vitamins can provide a biochemical link between microbial processes and sediment geochemistry. Here we present B-vitamin pore water concentrations from suboxic sediment cores collected in September 2014 from San Pedro Basin, a silled, low oxygen, ~900 m deep coastal basin in the California Borderlands. We compare the B-vitamin concentrations (measured via LCMS) to a set of geochemical profiles including dissolved Fe (65-160 μM), dissolved Mn (30-300 nM), TCO2, solid phase organic carbon, and δ13C. Our results show high concentrations (0.8-3nM) of biotin (B7), commonly used for CO2 fixation as a cofactor in carboxylase enzymes. Thiamin (B1) concentrations were elevated (20-700nM), consistent with previous pore water measurements showing sediments could be a source of B1 to the ocean. Cobalamin (B12), a cofactor required for methyl transfers in methanogens, was also detected in pore waters (~4-40pM). The flavins (riboflavin [B2] and flavin mononucleotide[FMN]), molecules utilized in external electron transfer, showed a distinct increase with depth (10-90nM). Interestingly, the flavin profiles showed an inverse trend to dissolved Fe (Fe decreases with depth) providing a potential link to culture experiments which have shown extracellular flavin release to be a common trait in some metal reducers. As some of the first B-vitamin measurements made in marine sediments, these results illustrate the complex interaction between the microbial community and surrounding geochemical environment and provide exciting avenues for future research.

Can MODIS Data Calibrate and Validate Coastal Sediment Transport Models? Rapid Prototyping Using 250 m Data and the ECOMSED Model for Lake Pontchartrain, LA USA

NASA Technical Reports Server (NTRS)

Miller, Richard L.; Georgiou, Ioannis; Glorioso, Mark V.; McCorquodale, J. Alex; Crowder, Keely

2006-01-01

Field measurements from small boats and sparse arrays of instrumented buoys often do not provide sufficient data to capture the dynamic nature of biogeophysical parameters in may coastal aquatic environments. Several investigators have shown the MODIS 250 m images can provide daily synoptic views of suspended sediment concentration in coastal waters to determine sediment transport and fate. However, the use of MODIS for coastal environments can be limited due to a lack of cloud-free images. Sediment transport models are not constrained by sky conditions but often suffer from a lack of in situ observations for model calibration or validation. We demonstrate here the utility of MODIS 250 m to calibrate (set model parameters), validate output, and set or reset initial conditions of a hydrodynamic and sediment transport model (ECOMSED) developed for Lake Pontchartrain, LA USA. We present our approach in the context of how to quickly assess of 'prototype' an application of NASA data to support environmental managers and decision makers. The combination of daily MODIS imagery and model simulations offer a more robust monitoring and prediction system of suspended sediments than available from either system alone.

Examining Reservoir Influences on Fluvial Sediment Supply to Estuaries and Coastal Oceans with Sediment Geochronologies: Example from Conowingo Reservoir (Upper Chesapeake Bay, USA)

NASA Astrophysics Data System (ADS)

Palinkas, C. M.; Russ, E.

2016-12-01

The flux of fluvial sediment to estuaries and coastal oceans is often interrupted by natural and anthropogenic influences. Here, we focus on river dams, which alter the connection between rivers and their receiving basins via sediment sequestration in their reservoirs. Sediments are effectively trapped until river discharge is high enough to create flow velocities capable of resuspending sediment. Sediment resuspension often varies within the reservoir, driven by morphological features such as channels and islands. Thus, sediment residence times in the reservoir are often highly variable in space and time. This study focuses on reading the sedimentary record in one such system - the reservoir upstream of Conowingo Dam, built in the late 1920s and the last and largest dam on the Susquehanna River (Maryland, USA) before it enters Chesapeake Bay. This study establishes geochronologies of reservoir sedimentation on seasonal to decadal time scales with a variety of techniques (e.g., natural and anthropogenic radioisotopes (7Be, 210Pb, 137Cs), coal from mining in the watershed) to interpret observed down-core sedimentary structures and characteristics (grain size, organic content). These observations reveal spatial and temporal patterns of sediment deposition and/or erosion. Placed within the broader context of reservoir geomorphology, these results can improve predictions of sediment supply to downstream environments, in this case Chesapeake Bay, where it can impact water quality and/or benthic organisms.

Are conventional statistical techniques exhaustive for defining metal background concentrations in harbour sediments? A case study: The Coastal Area of Bari (Southeast Italy).

PubMed

Mali, Matilda; Dell'Anna, Maria Michela; Mastrorilli, Piero; Damiani, Leonardo; Ungaro, Nicola; Belviso, Claudia; Fiore, Saverio

2015-11-01

Sediment contamination by metals poses significant risks to coastal ecosystems and is considered to be problematic for dredging operations. The determination of the background values of metal and metalloid distribution based on site-specific variability is fundamental in assessing pollution levels in harbour sediments. The novelty of the present work consists of addressing the scope and limitation of analysing port sediments through the use of conventional statistical techniques (such as: linear regression analysis, construction of cumulative frequency curves and the iterative 2σ technique), that are commonly employed for assessing Regional Geochemical Background (RGB) values in coastal sediments. This study ascertained that although the tout court use of such techniques in determining the RGB values in harbour sediments seems appropriate (the chemical-physical parameters of port sediments fit well with statistical equations), it should nevertheless be avoided because it may be misleading and can mask key aspects of the study area that can only be revealed by further investigations, such as mineralogical and multivariate statistical analyses. Copyright © 2015 Elsevier Ltd. All rights reserved.

Leakage of CO2 from sub-seafloor CO2 storage sites to the seabed; Impacts on sediment microorganisms and geochemical parameters during in situ and laboratory leakage experiments

NASA Astrophysics Data System (ADS)

Reigstad, L. J.; Hannisdal, B.; Hoffmann, F. U.; Sweetman, A. K.; Baumberger, T.; Eickmann, B.; Røy, H.; Thorseth, I. H.; Pedersen, R. B.

2013-12-01

detected on all three levels in all depths investigated, but the response to acidification appeared among less-abundant prokaryotic groups in the sediment, rather than the numerically dominant groups. Quantification of the 16S rRNA genes (DNA level) indicated no increase in cell numbers in response to the treatment. However, an increase in the in situ microbial sulfate reduction rates and/or expression of marker genes for sulfate reduction (RNA level) was discovered. Analyses of marker gene expression for other prokaryotic metabolisms will be presented as well as correlations between specific organisms and geochemical parameters. Within the limitations of the experimental set up, our studies indicate that a leakage of CO2 from a sub-seafloor storage site may not dramatically change the composition of the active microbial community in the seabed sediment though we did register activity changes in some metabolisms.

Levels and mass burden of DDTs in sediments from fishing harbors: the importance of DDT-containing antifouling paint to the coastal environment of China.

PubMed

Lin, Tian; Hu, Zhaohui; Zhang, Gan; Li, Xiangdong; Xu, Weihai; Tang, Jianhui; Li, Jun

2009-11-01

DDT remains an important type of persistent organic pollutant (POP) in the environment of China. One of the current applications of DDT in China has been through antifouling paint for fishing ships as an active component. It has been estimated that approximately 5000 t of DDT was released into the Chinese coastal environment during the last two decades. Therefore, sediments in coastal fishing harbors of China may be the important sinks of DDT. In this study, DDT and its metabolites in 58 sediment samples from nine typical fishing harbors along the coastal line of China were characterized to assess their accumulation levels, sediment burdens, and potential ecological risks. The concentrations of DDTs ranged from 9 to 7350 ng/g dry weight, which were generally 1-2 orders of magnitude higher than those of the adjacent estuarine/marine sediments. The high concentrations of DDT coupled with the lower concentrations of HCH and TOC clearly indicated a strong local DDT input, i.e., DDT-containing antifouling paint, within the fishing harbors. A significant correlation between the total DDT concentrations and p,p'-DDT concentrations further confirmed the existence of fresh DDT input. The overall burden of DDTs within the upper 10 cm sediment layer in the fishing harbors of the Pearl River Delta, southern China, was estimated to be 1.0-5.7 t, which was several times higher than the DDT accumulation in the surface sediment of the Pearl River estuary. The concentrations of DDTs in the fishing harbor sediments significantly exceeded the sediment quality guidelines on the basis of adverse biological effects. The absence or low concentrations of p,p'-DDD in aquatic organisms and human may imply that either p,p'-DDD may be less bioaccumulated by fish and human, or is biotransformed to other metabolites. A national ban of DDT as an additive to antifouling paint was implemented in 2009 in China; however, the legacy high DDT burden in the coastal fishing harbors needs further

Microplastics in the Mediterranean Sea: Deposition in coastal shallow sediments, spatial variation and preferential grain size.

PubMed

Alomar, Carme; Estarellas, Fernando; Deudero, Salud

2016-04-01

Marine litter loads in sea compartments are an emergent issue due to their ecological and biological consequences. This study addresses microplastic quantification and morphological description to test spatial differences along an anthropogenic gradient of coastal shallow sediments and further on to evaluate the preferential deposition of microplastics in a given sediment grain fraction. Sediments from Marine Protected Areas (MPAs) contained the highest concentrations of microplastics (MPs): up to 0.90 ± 0.10 MPs/g suggesting the transfer of microplastics from source areas to endpoint areas. In addition, a high proportion of microplastic filaments were found close to populated areas whereas fragment type microplastics were more common in MPAs. There was no clear trend between sediment grain size and microplastic deposition in sediments, although microplastics were always present in two grain size fractions: 2 mm > x > 1 mm and 1 mm > x 0.5 mm. Copyright © 2016 Elsevier Ltd. All rights reserved.

Ammonia-oxidizing bacteria and archaea in wastewater treatment plant sludge and nearby coastal sediment in an industrial area in China.

PubMed

Zhang, Yan; Chen, Lujun; Sun, Renhua; Dai, Tianjiao; Tian, Jinping; Wen, Donghui

2015-05-01

Under the increasing pressure of human activities, Hangzhou Bay has become one of the most seriously polluted waters along China's coast. Considering the excessive inorganic nitrogen detected in the bay, in this study, the impact of an effluent from a coastal industrial park on ammonia-oxidizing microorganisms (AOMs) of the receiving area was interpreted for the first time by molecular technologies. Revealed by real-time PCR, the ratio of archaeal amoA/bacterial amoA ranged from 5.68 × 10(-6) to 4.79 × 10(-5) in the activated sludge from two wastewater treatment plants (WWTPs) and 0.54-3.44 in the sediments from the effluent receiving coastal area. Analyzed by clone and pyrosequencing libraries, genus Nitrosomonas was the predominant ammonia-oxidizing bacteria (AOB), but no ammonia-oxidizing archaea (AOA) was abundant enough for sequencing in the activated sludge from the WWTPs; genus Nitrosomonas and Nitrosopumilus were the dominant AOB and AOA, respectively, in the coastal sediments. The different abundance of AOA but similar structure of AOB between the WWTPs and nearby coastal area probably indicated an anthropogenic impact on the microbial ecology in Hangzhou Bay.

A Fungal-Prokaryotic Consortium at the Basalt-Zeolite Interface in Subseafloor Igneous Crust

PubMed Central

Ivarsson, Magnus; Bengtson, Stefan; Skogby, Henrik; Lazor, Peter; Broman, Curt; Belivanova, Veneta; Marone, Federica

2015-01-01

We have after half a century of coordinated scientific drilling gained insight into Earth´s largest microbial habitat, the subseafloor igneous crust, but still lack substantial understanding regarding its abundance, diversity and ecology. Here we describe a fossilized microbial consortium of prokaryotes and fungi at the basalt-zeolite interface of fractured subseafloor basalts from a depth of 240 m below seafloor (mbsf). The microbial consortium and its relationship with the surrounding physical environment are revealed by synchrotron-based X-ray tomographic microscopy (SRXTM), environmental scanning electron microscopy (ESEM), and Raman spectroscopy. The base of the consortium is represented by microstromatolites—remains of bacterial communities that oxidized reduced iron directly from the basalt. The microstromatolites and the surrounding basalt were overlaid by fungal cells and hyphae. The consortium was overgrown by hydrothermally formed zeolites but remained alive and active during this event. After its formation, fungal hyphae bored in the zeolite, producing millimetre-long tunnels through the mineral substrate. The dissolution could either serve to extract metals like Ca, Na and K essential for fungal growth and metabolism, or be a response to environmental stress owing to the mineral overgrowth. Our results show how microbial life may be maintained in a nutrient-poor and extreme environment by close ecological interplay and reveal an effective strategy for nutrient extraction from minerals. The prokaryotic portion of the consortium served as a carbon source for the eukaryotic portion. Such an approach may be a prerequisite for prokaryotic-eukaryotic colonisation of, and persistence in, subseafloor igneous crust. PMID:26488482

Modern sedimentation processes in a wave-dominated coastal embayment: Espírito Santo Bay, southeast Brazil

NASA Astrophysics Data System (ADS)

Bastos, Alex Cardoso; Costa Moscon, Daphnne Moraes; Carmo, Dannilo; Neto, José Antonio Baptista; da Silva Quaresma, Valéria

2015-02-01

Sediment dynamics in wave-dominated coastal embayments are generally controlled by seasonal meteorological conditions, storms having a particularly strong influence. In the present study, such hydrodynamic processes and associated deposits have been investigated in a coastal embayment located along the southeast coast of Brazil, i.e. Espírito Santo Bay, in the winter (June/July) of 2008. The bay has undergone a series of human interventions that have altered the local hydrodynamic processes and, consequently, the sediment transport patterns. Facies distribution and sediment dynamics were examined by acoustic seabed mapping, sediment and core sampling, hydrodynamic measurements and sand transport modelling. The results show that sediment distribution can be described in terms of nearshore and offshore zones. The offshore bay sector is predominantly composed of "palimpsest" lithoclastic medium-coarse sands deposited in the course of the early Holocene transgression that peaked about 5,000 years ago. In the inner bay or nearshore zone (up to depths of 4-8 m), these older transgressive deposits are today overlain by a thin (up to 30-cm-thick) and partly patchy blanket of younger regressive fine sand/muddy fine sands. Both coarse- and fine-grained facies are being reworked during high-energy events (Hs>1.5 m) when fine sediment is resuspended, weak tide-induced drift currents causing the sand patches to be displaced. The coarser sediment, by contrast, is mobilized as bedload to produce wave ripples with spacings of up to 1.2 m. These processes lead to a sharp spatial delimitation between a fine sand/mud facies and a rippled coarse sand facies. The fine sand patches have a relief of about 20-30 cm and reveal a typical internal tempestite depositional sequence. Fair-weather wave-induced sediment transport (Hs<1 m), supported by weak tidal currents, seems to only affect the fine sediment facies. Sediment dynamics in Espírito Santo Bay is thus essentially controlled by

Effects of composition of labile organic matter on biogenic production of methane in the coastal sediments of the Arabian Sea.

PubMed

Gonsalves, Maria-Judith; Fernandes, Christabelle E G; Fernandes, Sheryl Oliveira; Kirchman, David L; Bharathi, P A Loka

2011-11-01

Coastal regions are potential zones for production of methane which could be governed by ecological/environmental differences or even sediment properties of a niche. In order to test the hypothesis that methanogenesis in most marine sediments could be driven more by proteins than by carbohydrates and lipid content of labile organic matter (LOM), incubation experiments were carried out with sediments from different environmental niches to measure methane production. The methane production rates were examined in relationship to the sediment biochemistry, i.e., carbohydrates, proteins, and lipids. The gas production measured by head space method ranged from 216 ng g( -1) day( -1) in the mangrove sediments to 3.1 μg g( -1) day( -1) in the shallow Arabian Sea. LOM ranged from 1.56 to 2.85 mg g( -1) in the shallow Arabian Sea, from 3.35 to 5.43 mg g( -1) in the mangrove estuary, and from 0.66 to 0.70 mg g( -1) in the sandy sediments with proteins contributing maximum to the LOM pool. Proteins influenced methane production in the clayey sediments of shallow depths of the Arabian Sea (r = 0.933, p < 0.001) and mangrove estuary (r = 0.981, p < 0.001) but in the sandy beach sediments, carbohydrates (r = 0.924, p < 0.001) governed the net methane production. The gas production was more pronounced in shallow and surface sediments and it decreased with depth apparently governed by the decrease in lability index. Thus, the lability index and protein content are important factors that determine methane production rates in these coastal ecosystems.

TBT and its metabolites in sediments: Survey at a German coastal site and the central Baltic Sea.

PubMed

Abraham, Marion; Westphal, Lina; Hand, Ines; Lerz, Astrid; Jeschek, Jenny; Bunke, Dennis; Leipe, Thomas; Schulz-Bull, Detlef

2017-08-15

Since the 1950s the organotin compound tributyltin (TBT) was intensively used in antifouling paints for marine vessels and it became of concern for the marine environment. Herein, we report on a study from 2015 on TBT and its metabolites monobutyltin (MBT) and dibutyltin (DBT) in sediments from the central Baltic Sea and a Baltic Sea coastal site with strong harbor activities (Warnemünde). Sublayers from a sediment core from the Arkona Basin were analyzed to investigate the long term organotin pressure for the Baltic Sea. For the central Baltic Sea total organotin (MBT+DBT+TBT) ranged from 100 to 500ng/g TOC with distinct areas of high organotin content probably due to historical inputs. For the coastal site total organotin ranged from 10,000 to 60,000ng/g TOC. MBT and DBT were the predominant organotin species detected. Overall, the data obtained indicate the progress of TBT degradation at the investigated sites. Copyright © 2017 Elsevier Ltd. All rights reserved.

Abiotic reduction of trifluralin and pendimethalin by sulfides in black-carbon-amended coastal sediments.

PubMed

Gong, Wenwen; Liu, Xinhui; Xia, Shuhua; Liang, Baocui; Zhang, Wei

2016-06-05

Dinitroaniline herbicides such as trifluralin and pendimethalin are persistent bioaccumulative toxins to aquatic organisms. Thus, in-situ remediation of contaminated sediments is desired. This study investigated whether black carbons (BCs), including apple wood charcoal (BC1), rice straw biochar (BC2), and activated carbon (BC3), could facilitate abiotic reduction of trifluralin and pendimethalin by sulfides of environmentally-relevant concentrations in anoxic coastal sediments. The reduction rates of trifluralin and pendimethalin increased substantially with increasing BC dosages in the sediments. This enhancing effect was dependent on BC type with the greatest for BC3 followed by BC1 and BC2, which well correlated with their specific surface area. The pseudo-first order reduction rate constants (kobs) for BC3-amended sediment (2%) were 13- and 14 times the rate constants in the BC-free sediment. The reduction rates increased with increasing temperature from 8 to 25°C in the BC-amended sediment, following the Arrhenius relationship. Finally, through molecular modeling by density functional theory and reaction species identification from mass spectra, molecular pathways of trifluralin and pendimethalin reduction were elucidated. In contrary to the separate sequential reduction of each nitro group to amine group, both nitro groups, first reduced to nitroso, then eventually to amine groups. Copyright © 2016 Elsevier B.V. All rights reserved.

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

PubMed

Massana, Ramon; Gobet, Angélique; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Chambouvet, Aurélie; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R; Dunthorn, Micah; Edvardsen, Bente; Forn, Irene; Forster, Dominik; Guillou, Laure; Jaillon, Olivier; Kooistra, Wiebe H C F; Logares, Ramiro; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C; Probert, Ian; Romac, Sarah; Richards, Thomas; Santini, Sébastien; Shalchian-Tabrizi, Kamran; Siano, Raffaele; Simon, Nathalie; Stoeck, Thorsten; Vaulot, Daniel; Zingone, Adriana; de Vargas, Colomban

2015-10-01

Although protists are critical components of marine ecosystems, they are still poorly characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist communities collected in six distant European coastal sites. Environmental deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) from three size fractions (pico-, nano- and micro/mesoplankton), as well as from dissolved DNA and surface sediments were used as templates for tag pyrosequencing of the V4 region of the 18S ribosomal DNA. Beta-diversity analyses split the protist community structure into three main clusters: picoplankton-nanoplankton-dissolved DNA, micro/mesoplankton and sediments. Within each cluster, protist communities from the same site and time clustered together, while communities from the same site but different seasons were unrelated. Both DNA and RNA-based surveys provided similar relative abundances for most class-level taxonomic groups. Yet, particular groups were overrepresented in one of the two templates, such as marine alveolates (MALV)-I and MALV-II that were much more abundant in DNA surveys. Overall, the groups displaying the highest relative contribution were Dinophyceae, Diatomea, Ciliophora and Acantharia. Also, well represented were Mamiellophyceae, Cryptomonadales, marine alveolates and marine stramenopiles in the picoplankton, and Monadofilosa and basal Fungi in sediments. Our extensive and systematic sequencing of geographically separated sites provides the most comprehensive molecular description of coastal marine protist diversity to date. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

A Technique for Remote Sensing of Suspended Sediments and Shallow Coastal Waters Using MODIS Visible and Near-IR Channels

NASA Technical Reports Server (NTRS)

Li, Rong-Rong; Kaufman, Yoram J.

2002-01-01

We have developed an algorithm to detect suspended sediments and shallow coastal waters using imaging data acquired with the Moderate Resolution Imaging SpectroRadiometer (MODIS). The MODIS instruments on board the NASA Terra and Aqua Spacecrafts are equipped with one set of narrow channels located in a wide 0.4 - 2.5 micron spectral range. These channels were designed primarily for remote sensing of the land surface and atmosphere. We have found that the set of land and cloud channels are also quite useful for remote sensing of the bright coastal waters. We have developed an empirical algorithm, which uses the narrow MODIS channels in this wide spectral range, for identifying areas with suspended sediments in turbid waters and shallow waters with bottom reflections. In our algorithm, we take advantage of the strong water absorption at wavelengths longer than 1 micron that does not allow illumination of sediments in the water or a shallow ocean floor. MODIS data acquired over the east coast of China, west coast of Africa, Arabian Sea, Mississippi Delta, and west coast of Florida are used in this study.

Assessing effects of changing land use practices on sediment loads in Panther Creek, north coastal California

Treesearch

Mary Ann Madej; Greg Bundros; Randy Klein

2012-01-01

Revisions to the California Forest Practice Rules since 1974 were intended to increase protection of water quality in streams draining timber harvest areas. The effects of improved timber harvesting methods and road designs on sediment loading are assessed for the Panther Creek basin, a 15.4 km2 watershed in Humboldt County, north coastal...

A Sr-Nd isotopic study of sand-sized sediment provenance and transport for the San Francisco Bay coastal system

USGS Publications Warehouse

Rosenbauer, Robert J.; Foxgrover, Amy C.; Hein, James R.; Swarzenski, Peter W.; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

A diverse suite of geochemical tracers, including 87Sr/86Sr and 143Nd/144Nd isotope ratios, the rare earth elements (REEs), and select trace elements were used to determine sand-sized sediment provenance and transport pathways within the San Francisco Bay coastal system. This study complements a large interdisciplinary effort (Barnard et al., 2012) that seeks to better understand recent geomorphic change in a highly urbanized and dynamic estuarine-coastal setting. Sand-sized sediment provenance in this geologically complex system is important to estuarine resource managers and was assessed by examining the geographic distribution of this suite of geochemical tracers from the primary sources (fluvial and rock) throughout the bay, adjacent coast, and beaches. Due to their intrinsic geochemical nature, 143Nd/144Nd isotopic ratios provide the most resolved picture of where sediment in this system is likely sourced and how it moves through this estuarine system into the Pacific Ocean. For example, Nd isotopes confirm that the predominant source of sand-sized sediment to Suisun Bay, San Pablo Bay, and Central Bay is the Sierra Nevada Batholith via the Sacramento River, with lesser contributions from the Napa and San Joaquin Rivers. Isotopic ratios also reveal hot-spots of local sediment accumulation, such as the basalt and chert deposits around the Golden Gate Bridge and the high magnetite deposits of Ocean Beach. Sand-sized sediment that exits San Francisco Bay accumulates on the ebb-tidal delta and is in part conveyed southward by long-shore currents. Broadly, the geochemical tracers reveal a complex story of multiple sediment sources, dynamic intra-bay sediment mixing and reworking, and eventual dilution and transport by energetic marine processes. Combined geochemical results provide information on sediment movement into and through San Francisco Bay and further our understanding of how sustained anthropogenic activities which limit sediment inputs to the system (e

Coastal surface sediment quality assessment in Leizhou Peninsula (South China Sea) based on SEM-AVS analysis.

PubMed

Li, Feng; Lin, Jin-qin; Liang, Yan-yan; Gan, Hua-yang; Zeng, Xiang-yun; Duan, Zhi-peng; Liang, Kai; Liu, Xing; Huo, Zhen-hai; Wu, Chang-hua

2014-07-15

Surface sediments from the coastal area of the Leizhou Peninsula in the South China Sea were collected and analyzed and the potential ecological risks in the area were assessed based on acid-volatile sulfide (AVS) model. The AVS levels are between 0.109 and 55.6 μmol g(-1), with the average at 4.45 μmol g(-1). The high AVS-concentration zones include the aquaculture areas of Liusha Bay and the densely populated areas of Zhanjiang Bay. The simultaneously extracted metals (SEM) range from 0.026 μmol g(-1) to 8.61 μmol g(-1), with the average at 0.843 μmol g(-1). Most of high SEM-concentration stations were located in ports or aquaculture zones. Most of the coastal surface sediments of the Leizhou Peninsula (90%) had no adverse biological effects according to the criterion proposed by USEPA (2005); while adverse effects were uncertain in some stations (8%); even in 2 stations (2%) adverse biological effects may be expected. Copyright © 2014 Elsevier Ltd. All rights reserved.

Nearshore sediment thickness, Fire Island, New York

USGS Publications Warehouse

Locker, Stanley D.; Miselis, Jennifer L.; Buster, Noreen A.; Hapke, Cheryl J.; Wadman, Heidi M.; McNinch, Jesse E.; Forde, Arnell S.; Stalk, Chelsea A.

2017-04-03

Investigations of coastal change at Fire Island, New York (N.Y.), sought to characterize sediment budgets and determine geologic framework controls on coastal processes. Nearshore sediment thickness is critical for assessing coastal system sediment availability, but it is largely unquantified due to the difficulty of conducting geological or geophysical surveys across the nearshore. This study used an amphibious vessel to acquire chirp subbottom profiles. These profiles were used to characterize nearshore geology and provide an assessment of nearshore sediment volume. Two resulting sediment-thickness maps are provided: total Holocene sediment thickness and the thickness of the active shoreface. The Holocene sediment section represents deposition above the maximum flooding surface that is related to the most recent marine transgression. The active shoreface section is the uppermost Holocene sediment, which is interpreted to represent the portion of the shoreface thought to contribute to present and future coastal behavior. The sediment distribution patterns correspond to previously defined zones of erosion, accretion, and stability along the island, demonstrating the importance of sediment availability in the coastal response to storms and seasonal variability. The eastern zone has a thin nearshore sediment thickness, except for an ebb-tidal deposit at the wilderness breach caused by Hurricane Sandy. Thicker sediment is found along a central zone that includes shoreface-attached sand ridges, which is consistent with a stable or accretional coastline in this area. The thickest overall Holocene section is found in the western zone of the study, where a thicker lower section of Holocene sediment appears related to the westward migration of Fire Island Inlet over several hundred years.

The influence of ice on southern Lake Michigan coastal erosion

USGS Publications Warehouse

Barnes, P.W.; Kempema, E.W.; Reimnitz, E.; McCormick, M.

1994-01-01

Coastal ice does not protect the coast but enhances erosion by displacing severe winter wave energy from the beach to the shoreface and by entraining and transporting sediment alongshore and offshore. Three aspects of winter ice in Lake Michigan were studied over a 3-year period and found to have an important influence on coastal sediment dynamics and the coastal sediment budget: (1) the influence of coastal ice on shoreface morphology, (2) the transport of littoral sediments by ice, and (3) the formation of anchor and underwater ice as a frequent and important event entraining and transporting sediment. The nearshore ice complex contains a sediment load (0.2 - 1.2 t/m of coast) that is roughly equivalent to the average amount of sand eroded from the coastal bluffs and to the amount of sand ice- rafted offshore to the deep lake basin each year. -from Authors

Dehalogenation activities and distribution of reductive dehalogenase homologous genes in marine subsurface sediments.

PubMed

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H; Inagaki, Fumio

2009-11-01

Halogenated organic compounds serve as terminal electron acceptors for anaerobic respiration in a diverse range of microorganisms. Here, we report on the widespread distribution and diversity of reductive dehalogenase homologous (rdhA) genes in marine subsurface sediments. A total of 32 putative rdhA phylotypes were detected in sediments from the southeast Pacific off Peru, the eastern equatorial Pacific, the Juan de Fuca Ridge flank off Oregon, and the northwest Pacific off Japan, collected at a maximum depth of 358 m below the seafloor. In addition, significant dehalogenation activity involving 2,4,6-tribromophenol and trichloroethene was observed in sediment slurry from the Nankai Trough Forearc Basin. These results suggest that dehalorespiration is an important energy-yielding pathway in the subseafloor microbial ecosystem.

Organic contamination of surface sediments in the metropolitan coastal zone of Athens, Greece: sources, degree, and ecological risk.

PubMed

Kapsimalis, V; Panagiotopoulos, I P; Talagani, P; Hatzianestis, I; Kaberi, H; Rousakis, G; Kanellopoulos, T D; Hatiris, G A

2014-03-15

Bottom sediments represent a crucial component of the marine environment, since they constitute a habitat, a trophic resource, and a spawning place for various organisms. Unfortunately, the sediments of urban coastal areas are deeply impacted by anthropogenic activities that degrade their quality. In the Drapetsona-Keratsini metropolitan coastal zone of Athens, current industrial and shipping activities together with the effluents from a sewage outfall, which was in operation in the past, have resulted in one of the most contaminated sedimentary environments, in terms of organic compound loads, in Mediterranean. Exceptionally high concentrations of aliphatic hydrocarbons (up to 4457 μg g⁻¹), carcinogenic PAHs (up to 7284 ng g⁻¹), and organochlorines (up to 544 ng g⁻¹ for PCBs; up to 208 ng g⁻¹ for DDTs) constitute a major threat to the marine life of the associated Saronikos Gulf. Copyright © 2013 Elsevier Ltd. All rights reserved.

Cultivation of methanogenic community from 2-km deep subseafloor coalbeds using a continuous-flow bioreactor

NASA Astrophysics Data System (ADS)

Imachi, H.; Tasumi, E.; Morono, Y.; Ito, M.; Takai, K.; Inagaki, F.

2013-12-01

Deep subseafloor environments associated with hydrocarbon reservoirs have been least explored by previous scientific drilling and hence the nature of deep subseafloor life and its ecological roles in the carbon cycle remain largely unknown. In this study, we performed cultivation of subseafloor methanogenic communities using a continuous-flow bioreactor with polyurethane sponges, called down-flow hanging sponge (DHS) reactor. The sample used for the reactor cultivation was obtained from 2 km-deep coalbeds off the Shimokita Peninsula of Japan, the northwestern Pacific, during the Integrated Ocean Drilling Program (IODP) Expedition 337 using a riser drilling technology of the drilling vessel Chikyu. The coalbed samples were incubated anaerobically in the DHS reactor at the in-situ temperature of 40°C. Synthetic seawater supplemented with a tiny amount of yeast extract, acetate, propionate and butyrate was provided into the DHS reactor. After 34 days of the bioreactor operation, a small production of methane was observed. The methane concentration was gradually increased and the stable carbon isotopic composition of methane was consistency 13C-depleted during the bioreactor operation, indicating the occurrence of microbial methanogenesis. Microscopic observation showed that the enrichment culture contained a variety of microorganisms, including methanogen-like rod-shaped cells with F420 auto-fluorescence. Interestingly, many spore-like particles were observed in the bioreactor enrichment. Phylogenetic analysis of 16S rRNA genes showed the growth of phylogenetically diverse bacteria and archaea in the DHS reactor. Predominant archaeal components were closely related to hydrogenotrophic methanogens within the genus Methanobacterium. Some predominant bacteria were related to the spore-formers within the class Clostridia, which are overall in good agreement with microscopic observations. By analyzing ion images using a nano-scale secondary ion mass spectrometry (Nano

Hydrodynamic and Sediment Transport Modelling of Suralaya Coastal Area, Cilegon, Indonesia

NASA Astrophysics Data System (ADS)

Fattah, A. H.; Suntoyo; Damerianne, H. A.; Wahyudi

2018-03-01

The coastal zone of Suralaya is located in the district Pulomerak, Cilegon City, Province Banten. This region is a part of the Sunda Strait region that is very important area to support the ongoing activities such as, industries, power plant, ports, and tourism. However, those various activities will certainly give effect to the surrounding environment. To determine the environmental conditions of Suralaya Coast, it is necessary to study the hydrodynamics analysis and sediment transport modelling including the analysis of currents patterns. Tidal elevation observation was conducted for 15 days used to validate the water elevation simulation results, in which a good agreement between the observed data and the model result was obtained with the error value of 1.6%. The dominant current direction is from northeast in west season, while in the east season predominant current direction is from northwest with a speed average current 12,44 cm/s. The dominant wave direction is from the west. The average temperature is at 27°C and the bottom sediment dominant form is fine sand.

The South Carolina Coastal Erosion Study: Numerical modeling of circulation and sediment transport in Long Bay, SC

NASA Astrophysics Data System (ADS)

Warner, J. C.; Sullivan, C.; Voulgaris, G.; Work, P.; Haas, K.; Hanes, D. M.

2004-12-01

Long Bay, South Carolina, is a heavily populated coastal region that supports a large tourism industry. Sand resources are important for both recreation and coastal habitat. Earlier geological framework studies have identified a large sand deposit oblique to the shoreline, oriented clockwise in the offshore direction. This sand feature is ~ 10 km long, 2 km wide, and in excess of 3m thick, possibly providing a source for beach nourishment material. Objectives of this study are to describe the physical processes that control the transport of sediment in Long Bay, specifically off the coast of Myrtle Beach, South Carolina. Specifically we seek to 1) measure and model the oceanographic circulation in the region, 2) identify the processes that maintain the presence of the offshore sand feature, 3) quantify the control that the shoal exerts on the nearshore through changes in wave energy propagation, and 4) identify consequences of removal of the offshore sand feature. Both observational and numerical experiments are used to study the oceanographic circulation and transport of sediment. The observational study is described in an accompanying poster and consists of eight sites that measured tides, surface waves, currents, salinity, temperature, suspended sediment concentrations, and bed forms from October 2003 to April 2004. Numerical modeling for circulation and sediment transport in the study region uses a new version of ROMS (v2.1) that now includes transport of multiple grain sizes, coupling of sediment transport to wave bottom boundary layer models, and evolution of the bottom morphology. The SWAN model is used to compute wave propagation. Results indicate that currents in the study area are strongly influenced by both tidal motion and wind driven setup / setdown. The presence of the offshore sand feature alters the residual flows in the region. Sediment transport is more significant during periods of sustained strong winds that generate local waves. Wind direction

Occurrence of perfluorinated alkyl substances in sediment from estuarine and coastal areas of the East China Sea.

PubMed

Yan, Hong; Zhang, Chaojie; Zhou, Qi; Yang, Shouye

2015-02-01

Perfluorinated alkyl substances (PFAS) have drawn much attention due to their environmental persistence, ubiquitous existence, and bioaccumulation potential. The occurrence and spatial variation of PFAS were investigated through collection of riverine and marine sediments from estuarine and coastal areas of the East China Sea. Among them, perfluorooctanesulfonic acid (PFOS), perfluoroheptanoic acid (PFHpA), and perfluorooctanoic acid (PFOA) were the three predominant PFAS with the highest detection frequencies in the sediment. PFOS up to 32.4 ng g(-1) dw and ∑PFAS up to 34.8 ng g(-1) dw were detected. Compared to other studies, high levels of PFOS were found in sediments from the East China Sea. PFHpA was also detected at higher frequency and concentration than those of other studies, which suggests point sources in this area. Concentrations of PFAS in riverine sediments were much higher than in marine sediments. Analysis of spatial variations presented overall decreasing trends of PFAS from inshore to offshore areas.

Sediment transport patterns in the San Francisco Bay Coastal System from cross-validation of bedform asymmetry and modeled residual flux

USGS Publications Warehouse

Barnard, Patrick L.; Erikson, Li H.; Elias, Edwin P.L.; Dartnell, Peter

2013-01-01

The morphology of ~ 45,000 bedforms from 13 multibeam bathymetry surveys was used as a proxy for identifying net bedload sediment transport directions and pathways throughout the San Francisco Bay estuary and adjacent outer coast. The spatially-averaged shape asymmetry of the bedforms reveals distinct pathways of ebb and flood transport. Additionally, the region-wide, ebb-oriented asymmetry of 5% suggests net seaward-directed transport within the estuarine-coastal system, with significant seaward asymmetry at the mouth of San Francisco Bay (11%), through the northern reaches of the Bay (7-8%), and among the largest bedforms (21% for λ > 50 m). This general indication for the net transport of sand to the open coast strongly suggests that anthropogenic removal of sediment from the estuary, particularly along clearly defined seaward transport pathways, will limit the supply of sand to chronically eroding, open-coast beaches. The bedform asymmetry measurements significantly agree (up to ~ 76%) with modeled annual residual transport directions derived from a hydrodynamically-calibrated numerical model, and the orientation of adjacent, flow-sculpted seafloor features such as mega-flute structures, providing a comprehensive validation of the technique. The methods described in this paper to determine well-defined, cross-validated sediment transport pathways can be applied to estuarine-coastal systems globally where bedforms are present. The results can inform and improve regional sediment management practices to more efficiently utilize often limited sediment resources and mitigate current and future sediment supply-related impacts.

Sediment transport patterns in the San Francisco Bay Coastal System from cross-validation of bedform asymmetry and modeled residual flux

USGS Publications Warehouse

Barnard, Patrick L.; Erikson, Li H.; Elias, Edwin P.L.; Dartnell, Peter; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

The morphology of ~ 45,000 bedforms from 13 multibeam bathymetry surveys was used as a proxy for identifying net bedload sediment transport directions and pathways throughout the San Francisco Bay estuary and adjacent outer coast. The spatially-averaged shape asymmetry of the bedforms reveals distinct pathways of ebb and flood transport. Additionally, the region-wide, ebb-oriented asymmetry of 5% suggests net seaward-directed transport within the estuarine-coastal system, with significant seaward asymmetry at the mouth of San Francisco Bay (11%), through the northern reaches of the Bay (7–8%), and among the largest bedforms (21% for λ > 50 m). This general indication for the net transport of sand to the open coast strongly suggests that anthropogenic removal of sediment from the estuary, particularly along clearly defined seaward transport pathways, will limit the supply of sand to chronically eroding, open-coast beaches. The bedform asymmetry measurements significantly agree (up to ~ 76%) with modeled annual residual transport directions derived from a hydrodynamically-calibrated numerical model, and the orientation of adjacent, flow-sculpted seafloor features such as mega-flute structures, providing a comprehensive validation of the technique. The methods described in this paper to determine well-defined, cross-validated sediment transport pathways can be applied to estuarine-coastal systems globally where bedforms are present. The results can inform and improve regional sediment management practices to more efficiently utilize often limited sediment resources and mitigate current and future sediment supply-related impacts.

Acoustic measurement of sediment dynamics in the coastal zones using wireless sensor networks

NASA Astrophysics Data System (ADS)

Sudhakaran, A., II; Paramasivam, A.; Seshachalam, S.; A, C.

2014-12-01

Analyzing of the impact of constructive or low energy waves and deconstructive or high energy waves in the ocean are very much significant since they deform the geometry of seashore. The deformation may lead to productive result and also to the end of deteriorate damage. Constructive waves results deposition of sediment which widens the beach where as deconstructive waves results erosion which narrows the beach. Validation of historic sediment transportation and prediction of the direction of movement of seashore is essential to prevent unrecoverable damages by incorporating precautionary measurements to identify the factors that influence sediment transportation if feasible. The objective of this study is to propose a more reliable and energy efficient Information and communication system to model the Coastal Sediment Dynamics. Various factors influencing the sediment drift at a particular region is identified. Consequence of source depth and frequency dependencies of spread pattern in the presence of sediments is modeled. Property of source depth and frequency on sensitivity to values of model parameters are determined. Fundamental physical reasons for these sediment interaction effects are given. Shallow to deep water and internal and external wave model of ocean is obtained intended to get acoustic data assimilation (ADA). Signal processing algorithms are used over the observed data to form a full field acoustic propagation model and construct sound speed profile (SSP). The inversions of data due to uncertainties at various depths are compared. The impact of sediment drift over acoustic data is identified. An energy efficient multipath routing scheme Wireless sensor networks (WSN) is deployed for the well-organized communication of data. The WSN is designed considering increased life time, decreased power consumption, free of threats and attacks. The practical data obtained from the efficient system to model the ocean sediment dynamics are evaluated with remote

Fine Sediment Erosion and Transport to the Near Coastal Zone from Watersheds of St. Thomas, USVI

NASA Astrophysics Data System (ADS)

Benoit, G.; Xuan, Z.

2014-12-01

The US Virgin Islands' landscape is characterized by steep slopes and short distances from ridge peaks to fringing reefs. Fine-grained sediments eroded from predominantly thin soils may be transported rapidly by streams (locally called guts) to the sea and cause stress to corals. We have studied erosion and transport processes on St Thomas by three methods: (1) continuous monitoring of suspended matter in one of the island's few perennial streams, Dorothea Gut, (2) measurement of 137Cs inventories in soil cores taken across the landscape, and (3) evaluation of sediment captured in most of the island's coastal ponds, through which a significant portion of runoff must pass. We find that, for areas that have not been recently disturbed, watersheds retain fine sediments surprisingly well. On the other hand, small patches of land, like building lots that have been recently disturbed and poorly managed, can produce disproportionate amounts of fine sediment. These results differ somewhat from nearby St John, USVI, where unpaved roads are the major source of eroded sediments.

Eco-morphological Real-time Forecasting tool to predict hydrodynamic, sediment and nutrient dynamic in Coastal Louisiana

NASA Astrophysics Data System (ADS)

Messina, F.; Meselhe, E. A.; Buckman, L.; Twight, D.

2017-12-01

Louisiana coastal zone is one of the most productive and dynamic eco-geomorphic systems in the world. This unique natural environment has been alternated by human activities and natural processes such as sea level rise, subsidence, dredging of canals for oil and gas production, the Mississippi River levees which don't allow the natural river sediment. As a result of these alterations land loss, erosion and flood risk are becoming real issues for Louisiana. Costal authorities have been studying the benefits and effects of several restoration projects, e.g. freshwater and sediment diversions. The protection of communities, wildlife and of the unique environments is a high priority in this region. The Water Institute of the Gulf, together with Deltares, has developed a forecasting and information system for a pilot location in Coastal Louisiana, specifically for Barataria Bay and Breton Sound Basins in the Mississippi River Deltaic Plain. The system provides a 7-day forecast of water level, salinity, and temperature, under atmospheric and coastal forecasted conditions, such as freshwater riverine inflow, rainfall, evaporation, wind, and tide. The system also forecasts nutrient distribution (e.g., Chla and dissolved oxygen) and sediment transport. The Flood Early Warning System FEWS is used as a platform to import multivariate data from several sources, use them to monitor the pilot location and to provide boundary conditions to the model. A hindcast model is applied to compare the model results to the observed data, and to provide the initial condition to the forecast model. This system represents a unique tool which provides valuable information regarding the overall conditions of the basins. It offers the opportunity to adaptively manage existing and planned diversions to meet certain salinity and water level targets or thresholds while maximizing land-building goals. Moreover, water quality predictions provide valuable information on the current ecological

Vertical and horizontal distribution of radionuclides (232Th, 238U and 40K) in sediment from Manjung coastal water area Perak, Malaysia

NASA Astrophysics Data System (ADS)

Abdullah, Anisa; Hamzah, Zaini; Saat, Ahmad; Wood, Ab. Khalik

2016-01-01

Distribution of radionuclides from anthropogenic activities has been widely studied in marine coastal area. Due to rapid population growth and socio-economic development in Manjung area such as coal fired power plant, iron foundries, port development, waste discharged from factories and agriculture runoff may contribute to increase in pollution rate. The radioactive materials from anthropogenic activities could deteriorate the quality of the marine ecosystem and thus lead to possible radiological health risk to the population. Radionuclides (232Th, 238U and 40K) content in surface and profile sediment from Manjung coastal area was determined in this study. Radionuclides in sediment from seven locations were collected using sediment core sampling and measurements were carried out using Energy Dispersive X-ray Fluorescence (EDXRF) spectroscopy. The results show that the concentration of radionuclides in surface sediment and distribution trend of depth vertical profile sediment generally varies depending on locations. Enrichment factors (EF), geo-accumulation index (Igeo) and pollution index (PI) were applied to determine level of pollution of this study area. The radiological risks related to human exposure were evaluated based on external hazard index (Hex).

Occurrence and distribution of perfluoroalkyl acids (PFAAs) in surface water and sediment of a tropical coastal area (Bay of Bengal coast, Bangladesh).

PubMed

Habibullah-Al-Mamun, Md; Ahmed, Md Kawser; Raknuzzaman, Mohammad; Islam, Md Saiful; Negishi, Junya; Nakamichi, Shihori; Sekine, Makoto; Tokumura, Masahiro; Masunaga, Shigeki

2016-11-15

This study reports the first evidence of perfluoroalkyl acids (PFAAs) in surface waters and sediments collected from the coastal area of Bangladesh. Fifteen target PFAAs, including C4-14-PFCAs (perfluoroalkyl carboxylates) and C4, C6, C8, and C10-PFSAs (perfluoroalkyl sulfonates), were quantified by HPLC-MS/MS. The ΣPFAAs in surface water and sediment samples were in the range of 10.6 to 46.8ng/L and 1.07 to 8.15ng/gdw, respectively. PFOA in water (3.17-27.8ng/L) and PFOS in sediment samples (0.60-1.14ng/gdw) were found to be the most abundant PFAAs, and these concentrations were comparable to or less than most other reported values, particularly those recorded from the coastal areas of China, Japan, Korea and Spain. The majority of the monitored PFAAs did not show clear seasonal variation. The southeastern part (Cox's Bazar and Chittagong) of the Bangladeshi coastal area was more contaminated with PFAAs than the southern (Meghna Estuary) and southwestern parts (Sundarbans). Industrial and municipal wastewater effluents, ship breaking and port activities were identified as potential sources of the PFAA contamination in this region. Field-based sediment water distribution coefficients (KD) were calculated and corrected for organic carbon content (KOC), which reduced the variability between samples. The values of log KD (1.63-2.88) and log KOC (4.02-5.16) were higher than previously reported values, which may indicate that the partitioning of PFAAs in a tropical coastal ecosystem is different from other ecosystems, such as temperate and sub-tropical regions. Although a preliminary environmental hazard assessment indicated that PFOA or PFOS levels do not currently exceed the acute safety thresholds, we should keep in mind that they are bioavailable and can accumulate in the food chain. Therefore, the ubiquity of PFAAs in the coastal area of Bangladesh warrants further studies characterizing their specific sources and the potential long-term risks they present to both

Diversity and composition of sediment bacteria in subtropical coastal wetlands of North Stradbroke Island, Queensland, Australia

NASA Astrophysics Data System (ADS)

Chuvochina, Maria; Sampayo, Eugenia; Welti, Nina; Hayes, Matthew; Lu, Yang; Lovelock, Catherine; Lockington, David

2013-04-01

Coastal wetlands provide a wide variety of important ecosystem services but continue to suffer disturbance, degradation and deforestation. Sediment bacteria are responsible for major nutrient transformation and recycling in these ecosystems. Insight into microbial community composition and the factors that determine them may improve our understanding of biogeochemical processes, food web dynamics, biodegradation processes and, thus, help to develop the management strategies for preserving the ecosystem health and services. Characterizing shifts in community taxa along environmental gradients has been shown to provide a useful tool for determining the major drivers affecting community structure and function. North Stradbroke Island (NSI) in Southern Queensland presents considerable habitat diversity including variety of groundwater dependent ecosystems such as lakes, swamps, sedge-like salt marshes and mangroves. Ecological responses of continuous groundwater extraction for municipal purposes and sand mining operations on NSI are still need to be assessed in order to protect its unique environment. Changes in coastal hydrology due to either climate change or human activity may directly affect microbial populations and, thus, biogeochemical cycles of nutrients. These may result in altering/losing some ecosystem services provided by coastal wetlands. In this study we examine microbial diversity and determine environmental controls on bacterial community structure along a natural transition from freshwater forested wetland (melaleuca woodland), sedge-like salt marsh and into mangroves located at NSI. The study area is characterized by significant groundwater flow, nutrient limitation and sharp transition from one ecosystem type to another. Sediment cores (0-5 cm and 20-25 cm depth) were collected from three representative sites of each zone (mangroves - salt marsh - freshwater wetland) along the salinity gradient in August 2012. Subsamples were set aside for use in

Arsenic in sediments, groundwater, and streamwater of a glauconitic Coastal Plain terrain, New Jersey, USA-Chemical " fingerprints" for geogenic and anthropogenic sources

USGS Publications Warehouse

Barringer, J.L.; Reilly, P.A.; Eberl, D.D.; Blum, A.E.; Bonin, J.L.; Rosman, R.; Hirst, B.; Alebus, M.; Cenno, K.; Gorska, M.

2011-01-01

Glauconite-bearing deposits are found worldwide, but As levels have been determined for relatively few. The As content of glauconites in sediments of the Inner Coastal Plain of New Jersey can exceed 100mg/kg, and total As concentrations (up to 5.95??g/L) found historically and recently in streamwaters exceed the State standard. In a major watershed of the Inner Coastal Plain, chemical " fingerprints" were developed for streambed sediments and groundwater to identify contributions of As to the watershed from geologic and anthropogenic sources. The fingerprint for streambed sediments, which included Be, Cr, Fe and V, indicated that As was predominantly of geologic origin. High concentrations of dissolved organic C, nutrients (and Cl-) in shallow groundwater indicated anthropogenic inputs that provided an environment where microbial activity released As from minerals to groundwater discharging to the stream. Particulates in streamwater during high flow constituted most of the As load; the chemical patterns for these particulates resembled the geologic fingerprint of the streambed sediments. The As/Cr ratio of these suspended particles likely indicates they derived not only from runoff, but from groundwater inputs, because As contributed by groundwater is sequestered on streambed sediments. Agricultural inputs of As were not clearly identified, although chemical characteristics of some sediments indicated vehicle-related inputs of metals. Sediment sampling during dry and wet years showed that, under differing hydrologic conditions, local anthropogenic fingerprints could be obscured but the geologic fingerprint, indicating glauconitic sediments as an As source, was robust. ?? 2011.

Assessing effects of changing land use practices on sediment loads in Panther Creek, north coastal California

USGS Publications Warehouse

Madej, Mary Ann; Bundros, Greg; Klein, Randy

2011-01-01

Revisions to the California Forest Practice Rules since 1974 were intended to increase protection of water quality in streams draining timber harvest areas. The effects of improved timber harvesting methods and road designs on sediment loading are assessed for the Panther Creek basin, a 15.4 km2 watershed in Humboldt County, north coastal California. We compute land use statistics, analyze suspended sediment discharge rating curves, and compare sediment yields in Panther Creek to a control (unlogged) stream, Little Lost Man Creek. From 1978 to 2008, 8.2 km2 (over half the watershed) was clearcut and other timber management activities (thinning, selection cuts, and so forth) affected an additional 5.9 km2. Since 1984, 40.7 km of streams in harvest units received riparian buffer strip protection. Between 2000 and 2009, 22 km of roads were upgraded and 9.7 km were decommissioned, reducing potential sediment production by an estimated 40,000 m3. Road density is currently 3.1 km/km2. Sediment rating curves from 2005 to 2010 indicate a decrease in suspended sediment concentrations when compared to the pre-1996 period, although Panther Creek still has a higher sediment yield on a per unit area basis than the control stream.

Storm-related sedimentation influenced by coastal configuration in the stratigraphic record of a tectonically active shelf (Upper Pleistocene Le Castella terrace, Italy)

NASA Astrophysics Data System (ADS)

Nalin, Ronald; Massari, Francesco

2018-03-01

Analysis of patterns of coastal circulation and sediment dispersal is an essential step for the study of controlling factors influencing the long-term dynamics of coastal systems. Modern settings offer the possibility to monitor relevant parameters over relatively short time spans. However, geological examples complement this perspective by providing a time-averaged record where longer trends and stratigraphically significant processes can be evaluated. This study investigates the shallow marine deposits of Le Castella terrace (Upper Pleistocene, southern Italy) to document how patterns of circulation influenced by coastline configuration can affect the preserved millennial-scale depositional record of a progradational shoreline system. The regressive portion of the Le Castella terrace deposits, developed during a relative sea-level highstand and falling stage, consists of a progradational wedge mainly composed of redistributed skeletal particles of a coeval shallow water carbonate factory. Preservation of the morphology of the paleocoastline and abundant current-related sedimentary structures allow reconstruction of the predominant sediment dispersal dynamics responsible for the formation of this sedimentary wedge. Facies and paleocurrent analysis indicate offshore and alongshore sediment transport modes, consistent with coastal circulation driven by storms normally incident to the shoreline and a sharp change in coastline orientation. This coastal inflection influenced circulation patterns causing flow separation and eddy formation in the lee of the curved coastline. Syndepositional tectonic deformation also affected the architecture of the preserved deposits, controlling the nucleation and development of a clinostratified body and determining localized lateral stratigraphic variability. This study illustrates how transient but recurrent circulation patterns associated with changes in coastal orientation and related to high-energy storm events can leave a

Korean coastal water depth/sediment and land cover mapping (1:25,000) by computer analysis of LANDSAT imagery

NASA Technical Reports Server (NTRS)

Park, K. Y.; Miller, L. D.

1978-01-01

Computer analysis was applied to single date LANDSAT MSS imagery of a sample coastal area near Seoul, Korea equivalent to a 1:50,000 topographic map. Supervised image processing yielded a test classification map from this sample image containing 12 classes: 5 water depth/sediment classes, 2 shoreline/tidal classes, and 5 coastal land cover classes at a scale of 1:25,000 and with a training set accuracy of 76%. Unsupervised image classification was applied to a subportion of the site analyzed and produced classification maps comparable in results in a spatial sense. The results of this test indicated that it is feasible to produce such quantitative maps for detailed study of dynamic coastal processes given a LANDSAT image data base at sufficiently frequent time intervals.

Spirochaeta psychrophila sp. nov., a psychrophilic spirochaete isolated from subseafloor sediment, and emended description of the genus Spirochaeta.

PubMed

Miyazaki, Masayuki; Sakai, Sanae; Yamanaka, Yuko; Saito, Yumi; Takai, Ken; Imachi, Hiroyuki

2014-08-01

An obligately anaerobic, psychrophilic spirochaete, strain MO-SPC1(T), was isolated from a methanogenic microbial community grown in a continuous-flow bioreactor. Originally, this community was obtained from subseafloor sediments off the Shimokita Peninsula of Japan in the north-western Pacific Ocean. The cells were motile, Gram-stain-negative, helical, 0.25-0.55×3.6-15 µm, with a wavelength of approximately 0.5-0.6 µm. Strain MO-SPC1(T) grew at 0-18 °C (optimally at 15 °C), at pH 6.0-7.5 (optimally at pH 6.8-7.0) and in 20-70 g NaCl l(-1) (optimally at 30-40 NaCl l(-1)). The strain grew chemo-organotrophically with mono-, di- and polysaccharides. The major end products of glucose fermentation were acetate, ethanol, hydrogen and carbon dioxide. The abundant polar lipids of strain MO-SPC1(T) were diphosphatidylglycerol, phosphatidylglycerol, unknown phospholipids and an unknown lipid. The major cellular fatty acids (>5% of the total) were C(14 : 0), C(16 : 0), iso-C(13 : 0), iso-C(14 : 0), iso-C(15 : 0), anteiso-C(13 : 0) and anteiso-C(15 : 0). To the best of our knowledge, this is the first report of the fatty acids iso-C(13 : 0) and anteiso-C(13 : 0) from a species of the genus Spirochaeta. Isoprenoid quinones were not found. The G+C content of the genomic DNA was 39.8 mol%. 16S rRNA gene sequence-based phylogenetic analysis showed that strain MO-SPC1(T) was affiliated with the genus Spirochaeta, and its closest relatives were Spirochaeta isovalerica MA-2(T) (95.6% sequence identity) and Spirochaeta litoralis R1(T) (89.4%). Based on its phenotypic characteristics and phylogenetic traits, strain MO-SPC1(T) is placed in a separate taxon at the level of a novel species within the genus Spirochaeta, for which the name Spirochaeta psychrophila sp. nov. is proposed, reflecting its true psychrophilic physiology. The type strain is MO-SPC1(T) ( = JCM 17280(T) = DSM 23951(T)). To our knowledge, this is the first report of an

Late Holocene sedimentation in coastal areas of the northwestern Ross Sea (Antarctica)

NASA Astrophysics Data System (ADS)

Colizza, Ester; Finocchiaro, Furio; Kuhn, Gerhard; Langone, Leonardo; Melis, Romana; Mezgec, Karin; Severi, Mirko; Traversi, Rita; Udisti, Roberto; Stenni, Barbara; Braida, Martina

2013-04-01

Sediment cores and box cores collected in two coastal areas of the northwestern Ross Sea (Antarctica) highlight the possibility of studying the Late Holocene period in detail. In this work we propose a study on two box cores and two gravity cores collected in the Cape Hallett and Wood Bay areas during the 2005 PNRA oceanographic cruise. The two sites are feed by Eastern Antarctic Ice Shelf (EAIS) and previous studies have highlighted a complex postglacial sedimentary sequence, also influenced by local morphology. This study is performed within the framework of the PNRA-ESF PolarCLIMATE HOLOCLIP (Holocene climate variability at high-southern latitudes: an integrated perspective) Project. The data set includes: magnetic susceptibility, X-ray analyses, 210Pb, 14C dating, diatoms and foraminifera assemblages, organic carbon, and grain-size analyses. Furthermore XRF core scanner analyses, colour analysis from digital images, and major, minor and trace element concentration analyses (ICP-AES) are performed. Data show that the box core and upper core sediments represent a very recent sedimentation in which it is possible to observe the parameter variability probably linked to climate variability/changes: these variation will be compared with isotopic record form ice cores collected form the same Antarctic sector.

Seasonal patterns of bacterial communities in the coastal brackish sediments of the Gulf of Finland, Baltic Sea

NASA Astrophysics Data System (ADS)

Vetterli, Adrien; Hyytiäinen, Kirsi; Ahjos, Minttu; Auvinen, Petri; Paulin, Lars; Hietanen, Susanna; Leskinen, Elina

2015-11-01

Coastal areas are critical in mitigating the impact of nutrient runoffs and downstream eutrophication of aquatic ecosystems. In the Gulf of Finland, the easternmost sub-basin of the Baltic Sea, seasonal and long-term oxygen depletion at the surface of the sediment feeds back the eutrophication loop by promoting the release of nutrients locked in the sediment matrix. In order to understand how the bacterial community responds to the seasonal variations, we sequenced ribosomal gene fragments from the top sediment layer at two coastal sites in southern Finland in spring, summer and late autumn during two consecutive years. Analysis of the samples collected at a shallow (11 m) and deep site (33 m) revealed that the overall community composition was rather constant over time with an extensive collection of shared operational taxonomic units (OTU) between sites. The dominant taxa were related to organoheterotrophs and sulfate reducers and the variation in community structure was linked to the availability of organic matter in the surface sediment. Proteobacteria formed the most abundant and diverse group. The taxa characteristic of spring samples belonged primarily to Actinobacteria, possibly of fresh water origin and linked to humic carbon. Summer communities were characterized by an increase in the number of reads associated with heterotrophic bacteria such as Bacteroidetes which feed on labile organic matter from spring bloom. Taxa typical of autumn samples were linked to Cyanobacteria and other bloom-forming bacteria from the overlying water and to bacteria feeding on organic matter drifting from the phytal zone.

Sediment fluxes from California Coastal Rivers: the influences of climate, geology, and topography

USGS Publications Warehouse

Andrews, E.D.; Antweiler, Ronald C.

2012-01-01

The influences of geologic and climatic factors on erosion and sedimentation processes in rivers draining the western flank of the California Coast Range are assessed. Annual suspended, bedload, and total sediment fluxes were determined for 16 river basins that have hydrologic records covering all or most of the period from 1950 to 2006 and have been relatively unaffected by flow storage, regulation, and depletion, which alter the downstream movement of water and sediment. The occurrence of relatively large annual sediment fluxes are strongly influenced by the El Nino–Southern Oscillation (ENSO) and the Pacific Decadal Oscillation (PDO). The frequency of relatively large annual sediment fluxes decreases from north to south during La Nina phases and increases from north to south during El Nino phases. The influence of ENSO is modulated over a period of decades by the PDO, such that relatively large annual sediment fluxes are more frequent during a La Nina phase in conjunction with a cool PDO and during an El Nino phase in conjunction with a warm PDO. Values of mean annual sediment flux, , were regressed against basin and climatic characteristics. Basin area, bedrock erodibility, basin relief, and precipitation explain 87% of the variation in from the 16 river basins. Bedrock erodibility is the most significant characteristic influencing . Basin relief is a superior predictor of compared with basin slope. is nearly proportional to basin area and increases with increasing precipitation. For a given percentage change, basin relief has a 2.3-fold greater effect on than a similar change in precipitation. The estimated natural from all California coastal rivers for the period 1950–2006 would have been approximately 85 million tons without flow storage, regulation, and depletion; the actual has been approximately 50 million tons, because of the effects of flow storage, regulation, and depletion.

Methane and sulfate dynamics in sediments from mangrove-dominated tropical coastal lagoons, Yucatan, Mexico

USGS Publications Warehouse

Chuang, P. C.; Young, Megan B.; Dale, Andrew W.; Miller, Laurence G.; Herrera-Silveira, Jorge A.; Paytan, Adina

2016-01-01

Porewater profiles in sediment cores from mangrove-dominated coastal lagoons (Celestún and Chelem) on the Yucatán Peninsula, Mexico, reveal the widespread coexistence of dissolved methane and sulfate. This observation is interesting since dissolved methane in porewaters is typically oxidized anaerobically by sulfate. To explain the observations we used a numerical transport-reaction model that was constrained by the field observations. The model suggests that methane in the upper sediments is produced in the sulfate reduction zone at rates ranging between 0.012 and 31 mmol m−2 d−1, concurrent with sulfate reduction rates between 1.1 and 24 mmol SO42− m−2 d−1. These processes are supported by high organic matter content in the sediment and the use of non-competitive substrates by methanogenic microorganisms. Indeed sediment slurry incubation experiments show that non-competitive substrates such as trimethylamine (TMA) and methanol can be utilized for microbial methanogenesis at the study sites. The model also indicates that a significant fraction of methane is transported to the sulfate reduction zone from deeper zones within the sedimentary column by rising bubbles and gas dissolution. The shallow depths of methane production and the fast rising methane gas bubbles reduce the likelihood for oxidation, thereby allowing a large fraction of the methane formed in the sediments to escape to the overlying water column.

Sediment Resuspension and Transport During Bora in the Western Adriatic Coastal Current

NASA Astrophysics Data System (ADS)

Mullenbach, B. L.; Geyer, W. R.; Sherwood, C. R.

2004-12-01

The Western Adriatic Coastal Current (WACC) is an important agent for along-shelf transport of sediment and fresh water in the western Adriatic Sea. The WACC is driven by a combination of buoyancy forcing from the Po River (northern Adriatic) and wind forcing from northeasterly Bora winds. The large seasonal pulse of freshwater (during the winter) from the Po River influences WACC strength; however, preliminary results from current measurements and model runs indicate that the WACC responds quickly and strongly to Bora wind events, with a strengthening of the current moving southward. Along-margin sediment transport to the south is significantly increased as a result of Bora wind events, presumably because of enhanced wave resuspension and WACC velocity. Elevated sediment fluxes have been observed in both the upper water column (i.e., core of the WACC) and bottom boundary layer (BBL) during these events, which suggests that wind-driven currents may be coupled with the near-bottom transport. This study addresses the interaction of the WACC with the BBL and the impact of this interaction on sediment transport in the western Adriatic. Two benthic tripods were deployed from November 2002 to June 2003 on an across-shelf transect near the Chienti River (at 10 and 20-m water depth), in the region where WACC begins to intensify (200 km south of Po River). Continuous measurements of suspended sediment concentration and current velocity were recorded in the upper-water column and BBL to document sediment transport events. A time series of sediment fluxes and shear velocities (from currents only, u*c; from waves and currents, u*wc) were calculated from these data. Results show that suspended sediment concentrations near the seabed (few cmab) during Bora wind events are strongly correlated with u*wc, which supports a previous hypothesis that wave resuspension (rather than direct fluvial input) is responsible for much of the suspended sediment available for transport southward

A Technique For Remote Sensing Of Suspended Sediments And Shallow Coastal Waters Using MODIS Visible and Near-IR Channels

NASA Astrophysics Data System (ADS)

Li, R.; Kaufman, Y.

2002-12-01

ABSTRACT We have developed an algorithm to detect suspended sediments and shallow coastal waters using imaging data acquired with the Moderate Resolution Imaging SpectroRadiometer (MODIS). The MODIS instruments on board the NASA Terra and Aqua Spacecrafts are equipped with one set of narrow channels located in a wide 0.4 - 2.5 micron spectral range. These channels were designed primarily for remote sensing of the land surface and atmosphere. We have found that the set of land and cloud channels are also quite useful for remote sensing of the bright coastal waters. We have developed an empirical algorithm, which uses the narrow MODIS channels in this wide spectral range, for identifying areas with suspended sediments in turbid waters and shallow waters with bottom reflections. In our algorithm, we take advantage of the strong water absorption at wavelengths longer than 1 æm that does not allow illumination of sediments in the water or a shallow ocean floor. MODIS data acquired over the east coast of China, west coast of Africa, Arabian Sea, Mississippi Delta, and west coast of Florida are used in this study.

Late Holocene sedimentation in a high Arctic coastal setting: Simpson Lagoon and Colville Delta, Alaska

NASA Astrophysics Data System (ADS)

Hanna, Andrea J. M.; Allison, Mead A.; Bianchi, Thomas S.; Marcantonio, Franco; Goff, John A.

2014-02-01

Arctic coastal environments near major river outfalls, like Simpson Lagoon, Alaska and the adjacent Colville River Delta, potentially contain high-resolution sediment records useful in elucidating late Holocene Arctic sediment transport pathways and coupled terrestrial-ocean evidence of paleoclimate variability. This study utilizes a multi-tracer geochronology approach (137Cs, 239,240Pu, and 14C) tailored for high-latitude environments to determine the age models for cores collected from Simpson Lagoon, and to date seismic boundaries in shallow acoustic reflection data (CHIRP) to examine late Holocene infill patterns. Modern (~100 y) sediment accumulation rates range from <0.02 to 0.46±0.04 cm y-1, with a primary depocenter in western Simpson Lagoon adjacent to the Colville Delta and a secondary depocenter in eastern Simpson Lagoon. CHIRP reflectors, age-constrained by 14C analysis, reveal rapid late Holocene (0-3500 y BP) transgression consistent with high modern shoreline retreat rates. The western depocenter contains >5 m of late Holocene interbedded sediments, likely derived primarily from the Colville River, with onset of accumulation occurring prior to ~3500 y BP. A paleo-high in central Simpson Lagoon, separating the two depocenters, was subaerially exposed prior to ~600 y BP. The millimeters-per-year sedimentation rates across the lagoon, coupled with the undisturbed, interbedded sediment record, indicate that these settings hold great potential to develop new Arctic paleoenvironmental records.

Sediment Transport and Slope Stability of Ship Shoal Borrow Areas for Coastal Restoration of Louisiana

NASA Astrophysics Data System (ADS)

Liu, H.; Xu, K.; Bentley, S. J.; Li, C.; Miner, M. D.; Wilson, C.; Xue, Z.

2017-12-01

Sandy barrier islands along Louisiana coast are degrading rapidly due to both natural and anthropogenic factors. Ship Shoal is one of the largest offshore sand resources, and has been used as a borrow area for Caminada Headland Restoration Project. Our knowledge of sediment transport and infilling processes in this new sandy and dynamic borrow area is rather limited. High resolution sub-bottom seismic data, side scan sonar images, multi-beam bathymetry and laser sediment grain size data were used to study seafloor morphological evolution and pit wall stability in response to both physical and geological processes. The multi-beam bathymetry and seismic profiling inside the pit showed that disequilibrium conditions led to rapid infilling in the pits at the beginning, but this process slowed down after the pit slope became stable and topography became smooth. We hypothesize that the erosion of the adjacent seabed sediment by energetic waves and longshore currents, the supply of suspended sediment from the rivers, and the erodible materials produced by local mass wasting on pit walls are three main types of infilling sediments. Compared with mud-capped dredge pits, this sandy dredge pit seems to have more gentle slopes on pit walls, which might be controlled by the angle of repose. Infilling sediment seems to be dominantly sandy, with some mud patches on bathymetric depressions. This study helps us better understand the impacts of mining sediment for coastal restoration and improves sand resource management efforts.

Assessment of metal contamination in coastal sediments of Al-Khobar area, Arabian Gulf, Saudi Arabia

NASA Astrophysics Data System (ADS)

Alharbi, Talal; El-Sorogy, Abdelbaset

2017-05-01

An assessment of marine pollution due to heavy metals was made to coastal sediments collected from Al-Khobar coastline, in the Arabian Gulf, Saudi Arabia by analyzing of Al, V, Cr, Mn, Cu, Zn, Cd, Pb, Hg, Mo, Sr, Se, As, Fe, Co and Ni using Inductively Coupled Plasma-Mass Spectrometer (ICP-MS). The results indicated that the distribution of most metals was largely controlled by inputs of terrigenous material and most strongly associated with distribution of Al in sediments. In general Sr, Cr, Zn, Cu, V, Hg, Mo and Se show severe enrichment factors. Average values of Cu and Hg highly exceed the ERL and the Canadian ISQG values. Average Ni was higher than the ERL and the ERM values. The severe enrichment of some metals in the studied sediment could be partially attributed to anthropogenic activities, notably oil spills from exploration, transportation and from saline water desalination plants in Al-Khobar coast, and other industrial activities in the region.

Environmental evolution records reflected by radionuclides in the sediment of coastal wetlands: A case study in the Yellow River Estuary wetland.

PubMed

Wang, Qidong; Song, Jinming; Li, Xuegang; Yuan, Huamao; Li, Ning; Cao, Lei

2016-10-01

Vertical profiles of environmental radionuclides ( 210 Pb, 137 Cs, 238 U, 232 Th, 226 Ra and 4 0 K) in a sediment core (Y1) of the Yellow River Estuary wetland were investigated to assess whether environmental evolutions in the coastal wetland could be recorded by the distributions of radionuclides. Based on 210 Pb and 137 Cs dating, the average sedimentation rate of core Y1 was estimated to be 1.0 cm y -1 . Vertical distributions of natural radionuclides ( 238 U, 232 Th, 226 Ra and 40 K) changed dramatically, reflecting great changes in sediment input. Concentrations of 238 U, 232 Th, 226 Ra and 40 K all had significant positive relationships with organic matter and clay content, but their distributions were determined by different factors. Factor analysis showed that 238 U was determined by the river sediment input while 226 Ra was mainly affected by the seawater erosion. Environmental changes such as river channel migrations and sediment discharge variations could always cause changes in the concentrations of radionuclides. High concentrations of 238 U and 226 Ra were consistent with high accretion rate. Frequent seawater intrusion decreased the concentration of 226 Ra significantly. The value of 238 U/ 226 Ra tended to be higher when the sedimentation rate was low and tide intrusion was frequent. In summary, environmental evolutions in the estuary coastal wetland could be recorded by the vertical profiles of natural radionuclides. Copyright © 2016 Elsevier Ltd. All rights reserved.

Boosting subsurface life: is subseafloor sediment a natural catalyst for radiolytic hydrogen production?

NASA Astrophysics Data System (ADS)

Sauvage, J.; Graham, D.; Spivack, A. J.; Dunlea, A. G.; Murray, R. W.; D'Hondt, S.

2014-12-01

Naturally occurring production of molecular hydrogen (H2) by water radiolysis may be a fundamentally important source of electron donors (energy) for life in subsurface environments where organic matter is scarce. Previous studies with very high gamma radiation rates and wet mineral phases have reported high H2 production relative to production from water radiolysis in the absence of solid phases. Numerical calculations by other previous studies have predicted enhanced H2 production from seawater radiolysis relative to pure water radiolysis, due to the interaction of anions with hydroxyl radicals. Given these reports, the potential catalytic influences of solid and dissolved chemical phases on radiolytic H2 production need to be carefully quantified in order to fully evaluate the role of radiolytic H2 as a microbial energy source. For such quantification, we undertook gamma-irradiation experiments with pure water, deep ocean water and mixtures (slurries, φ = 0.85) of seawater with: North Pacific abyssal clay and calcareous oozes, coastal sediment, zirconium dioxide, and zeolite. We carried out our experiments at the Rhode Island Nuclear Science Center using a 37Cesium source at low dose rates (up to 0.1 Gy/hr). Our results to date include the following. First, the per-dose radiolytic H2 yield of pure water at low dose rates is directly comparable to the per-dose yield at much higher dose rates (ca. 1 kGy/hr); this result indicates that H2 production rate is linearly related to radiation dose rate across four orders of magnitude. Second, there is no statistically significant difference (90% confidence limit) between the radiolytic H2 yield from pure water and that from seawater; this result rules out influence of abundant seawater salts on H2 yield from water radiolysis. Third, H2 production from a mixture of abyssal clay and seawater is 25% higher than the yield from pure water. This enhanced yield is consistent with catalysis of radiolytic H2 production by

Temporal variations of 90Sr and 137Cs concentrations in Japanese coastal surface seawater and sediments from 1974 to 1998

NASA Astrophysics Data System (ADS)

Ikeuchi, Yoshihiro

2003-09-01

90Sr and 137Cs concentrations were determined in surface water and bottom sediments collected at 11 sites offshore from Japan during the period 1974-1998, to investigate their temporal variations and behaviour in the coastal marine environment. The concentrations of 90Sr and 137Cs in surface water have decreased with time since 1974. After the period of atmospheric nuclear weapons tests, the mean residence times of 90Sr and 137Cs were about 41 and 51 years, respectively. The 137Cs/ 90Sr activity ratios in coastal seawater during the atmospheric nuclear weapons tests (up until 1980) were lower than those after the tests due to the inflow of 90Sr in river water. A sharp increase in 137Cs levels was observed in airborne dust, in precipitation on the Japanese islands, and in coastal surface seawater in 1986 following the Chernobyl accident. However, the 137Cs levels in surface water returned to pre-1986 levels quickly, indicating rapid removal of Cs from the surface to deeper water. Concentrations of 90Sr in sediments were generally much lower than those for 137Cs, reflecting the more effective scavenging of Cs from the water column. In Ca-rich sediments, consisting of corals and shells, higher 90Sr levels and 90Sr/ 137Cs activity ratios were found, reflecting higher accumulation of Sr than Cs in marine organisms. Higher accumulation of 90Sr than 137Cs was also found in seaweed (gulfweed and wakame).

Under-recognized pathways of N2O production in coastal sediments: Increased fungal and chemo-denitrification in response to elevated N loading

NASA Astrophysics Data System (ADS)

Wankel, S. D.; Ziebis, W.; Buchwald, C.; Charoenpong, C.; de Beer, D.

2016-02-01

Increasing atmospheric levels of nitrous oxide (N2O), a greenhouse gas with a 100-year global warming potential more than 300 times that of carbon dioxide, have been strongly linked to human activities - especially the dramatic increase in nitrogen loading to aquatic and marine ecosystems worldwide. While many studies have demonstrated that N2O is formed through a number of microbially mediated pathways, the factors regulating the emission of N2O to the atmosphere remain difficult to predict and the global N2O budget remains poorly constrained. In particular, coastal ecosystems, which bear much of the brunt of anthropogenically-derived nitrogen from watershed inputs and rapidly growing coastal human populations, represent large gaps in our understanding of sources and sinks of atmospheric N2O. In large part, these challenges stem from the fact that a diverse number of N2O production pathways are operative under the dynamic redox conditions encountered in coastal and estuarine sediments, complicating our ability to understand their relative roles in N2O fluxes. Here, we use whole-core sediment incubations together with a suite of conventional and novel stable isotopic tools to identify both factors influencing N2O flux as well as those underlying biogeochemical processes responding to those factors. We find that under elevated N loading to coastal sediments, an observed increase in N2O flux to the overlying water is not mediated by direct bacterial activity, but instead is catalyzed by fungal denitrification and/or abiotic interactions with reduced iron (e.g., chemodenitrification). These findings shed new light on the complexity of nitrogen cycling in coastal sedimentary environments and highlight the need for an improved understanding of eukaryotic and abiotic processes in regulating fluxes of climatically important gases such as N2O.

CH4 and CO2 production relative to carbon burial in wetlands undergoing sediment loss and accretion in coastal Louisiana

NASA Astrophysics Data System (ADS)

Ghaisas, N. A.; Maiti, K.; Rivera-Monroy, V. H.

2016-02-01

The coastal Louisiana region encompasses the largest deltaic system at the mouth of the Mississippi River, in the Gulf of Mexico, and includes the largest wetlands area in the United States. Given the critical functional role of coastal wetlands in carbon (C) storage and sequestration it is essential to assess the potential role of wetlands and adjacent tidal channels as sources (via CH4 and CO2 production) and sinks of carbon (via burial) along hydrological gradients. Such information is necessary to construct and constrain landscape-level C budgets. We investigate C burial and CO2 and CH4 emissions in two distinct sediment deposition environments undergoing land loss (Barataria Bay) and land formation (Wax Delta) in coastal Louisiana. Sediment cores (depth, 20 cm) were sampled at both sites along tidal channels, ridges and low elevation marshes during spring (March 10oC), early summer (May 20oC) and late summer (August 30oC) to evaluate seasonal and spatial scale variability in CH4 and CO2 production. CH4 production ranged from 0.003 to 20.8 moles/m2/day and differences were correlated to location, ambient temperature, dissolved O2 concentration in the overlying water and core sediment redox conditions. Seasonal CH4 fluxes into overlying water were significantly higher in the spring compared to the summer season. The CO2 fluxes ranged from 0.42 to 214 moles/m2/day and also showed higher fluxes at colder temperature ( 10 o C). These net fluxes will provide valuable information to evaluate the ratio of greenhouse gas production to carbon burial at two contrasting estuarine environments undergoing both loss and net gain of wetland area in coastal Louisiana.

Results of rainfall simulation to estimate sediment-bound carbon and nitrogen loss from an Atlantic Coastal Plain (USDA) ultisol

USDA-ARS?s Scientific Manuscript database

The impact of erosion on soil and carbon loss and redistribution within landscapes is an important component for developing estimates of carbon sequestration potential, management plans to maintain soil quality, and transport of sediment bound agrochemicals. Soils of the Southeastern U.S. Coastal Pl...

Towards Predicting Basin-Wide Invertebrate Organic Biomass and Production in Marine Sediments from a Coastal Sea

PubMed Central

Burd, Brenda J.; Macdonald, Tara A.; van Roodselaar, Albert

2012-01-01

Detailed knowledge of environmental conditions is required to understand faunal production in coastal seas with topographic and hydrographic complexity. We test the hypothesis that organic biomass and production of subtidal sediment invertebrates throughout the Strait of Georgia, west coast of Canada, can be predicted by depth, substrate type and organic flux modified to reflect lability and age of material. A basin-wide database of biological, geochemical and flux data was analysed using an empirical production/biomass (P/B) model to test this hypothesis. This analysis is unique in the spatial extent and detail of P/B and concurrent environmental measurements over a temperate coastal region. Modified organic flux was the most important predictor of organic biomass and production. Depth and substrate type were secondary modifiers. Between 69–74% of variability in biomass and production could be explained by the combined environmental factors. Organisms <1 mm were important contributors to biomass and production primarily in shallow, sandy sediments, where high P/B values were found despite low organic flux. Low biomass, production, and P/B values were found in the deep, northern basin and mainland fjords, which had silty sediments, low organic flux, low biomass of organisms <1 mm, and dominance by large, slow-growing macrofauna. In the highest organic flux and biomass areas near the Fraser River discharge, production did not increase beyond moderate flux levels. Although highly productive, this area had low P/B. Clearly, food input is insufficient to explain the complex patterns in faunal production revealed here. Additional environmental factors (depth, substrate type and unmeasured factors) are important modifiers of these patterns. Potential reasons for the above patterns are explored, along with a discussion of unmeasured factors possibly responsible for unexplained (30%) variance in biomass and production. We now have the tools for basin-wide first

A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer.

PubMed

Tully, Benjamin J; Wheat, C Geoff; Glazer, Brain T; Huber, Julie A

2018-01-01

The rock-hosted subseafloor crustal aquifer harbors a reservoir of microbial life that may influence global marine biogeochemical cycles. Here we utilized metagenomic libraries of crustal fluid samples from North Pond, located on the flanks of the Mid-Atlantic Ridge, a site with cold, oxic subseafloor fluid circulation within the upper basement to query microbial diversity. Twenty-one samples were collected during a 2-year period to examine potential microbial metabolism and community dynamics. We observed minor changes in the geochemical signatures over the 2 years, yet the microbial community present in the crustal fluids underwent large shifts in the dominant taxonomic groups. An analysis of 195 metagenome-assembled genomes (MAGs) were generated from the data set and revealed a connection between litho- and autotrophic processes, linking carbon fixation to the oxidation of sulfide, sulfur, thiosulfate, hydrogen, and ferrous iron in members of the Proteobacteria, specifically the Alpha-, Gamma- and Zetaproteobacteria, the Epsilonbacteraeota and the Planctomycetes. Despite oxic conditions, analysis of the MAGs indicated that members of the microbial community were poised to exploit hypoxic or anoxic conditions through the use of microaerobic cytochromes, such as cbb 3 - and bd-type cytochromes, and alternative electron acceptors, like nitrate and sulfate. Temporal and spatial trends from the MAGs revealed a high degree of functional redundancy that did not correlate with the shifting microbial community membership, suggesting functional stability in mediating subseafloor biogeochemical cycles. Collectively, the repeated sampling at multiple sites, together with the successful binning of hundreds of genomes, provides an unprecedented data set for investigation of microbial communities in the cold, oxic crustal aquifer.

A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer

PubMed Central

Tully, Benjamin J; Wheat, C Geoff; Glazer, Brain T; Huber, Julie A

2018-01-01

The rock-hosted subseafloor crustal aquifer harbors a reservoir of microbial life that may influence global marine biogeochemical cycles. Here we utilized metagenomic libraries of crustal fluid samples from North Pond, located on the flanks of the Mid-Atlantic Ridge, a site with cold, oxic subseafloor fluid circulation within the upper basement to query microbial diversity. Twenty-one samples were collected during a 2-year period to examine potential microbial metabolism and community dynamics. We observed minor changes in the geochemical signatures over the 2 years, yet the microbial community present in the crustal fluids underwent large shifts in the dominant taxonomic groups. An analysis of 195 metagenome-assembled genomes (MAGs) were generated from the data set and revealed a connection between litho- and autotrophic processes, linking carbon fixation to the oxidation of sulfide, sulfur, thiosulfate, hydrogen, and ferrous iron in members of the Proteobacteria, specifically the Alpha-, Gamma- and Zetaproteobacteria, the Epsilonbacteraeota and the Planctomycetes. Despite oxic conditions, analysis of the MAGs indicated that members of the microbial community were poised to exploit hypoxic or anoxic conditions through the use of microaerobic cytochromes, such as cbb3- and bd-type cytochromes, and alternative electron acceptors, like nitrate and sulfate. Temporal and spatial trends from the MAGs revealed a high degree of functional redundancy that did not correlate with the shifting microbial community membership, suggesting functional stability in mediating subseafloor biogeochemical cycles. Collectively, the repeated sampling at multiple sites, together with the successful binning of hundreds of genomes, provides an unprecedented data set for investigation of microbial communities in the cold, oxic crustal aquifer. PMID:29099490

Trace Elements in Bed Sediments and Biota from Streams in the Santee River Basin and Coastal Drainages, North and South Carolina, 1995-97

Treesearch

Thomas A. Abrahamsen

1999-01-01

Bed-sediment and tissue samples were collected and analyzed for the presence of trace elements from 25 sites in the Santee River Basin and coastal drainages study area during 1995-97 as part of the U.S. Geological Survey's National Water-Quality Assessment Program, Sediment trace-element priority-pollutant concentrations were compared among streams draining water-...

Rare earth elements in coastal sediments of the northern Galician shelf: Influence of geological features

NASA Astrophysics Data System (ADS)

Prego, Ricardo; Caetano, Miguel; Bernárdez, Patricia; Brito, Pedro; Ospina-Alvarez, Natalia; Vale, Carlos

2012-03-01

The Northern coast of Galicia, NW Iberian Peninsula, exhibits a variety of geological features: Ortegal allochthonous complex, Ollo-de-Sapo autochthonous domain and massifs of Bares, Barqueiro and San-Ciprian. In order to examine the influence of terrestrial lithologies on coastal sediments, 103 samples were collected in the Rias of Ortigueira, Barqueiro and Viveiro, their neighbouring shelf and the estuaries of Mera, Sor and Landro rivers. Aluminium, Fe, Sc, particulate inorganic and organic carbon and rare earth elements (REE) were determined in the <2 mm fraction. In addition, calcite, muscovite, quartz and riebeckite minerals were identified and quantified in 33 selected samples. The distributions of riebeckite and Fe reflect the influence of Ortegal complex on the coastal areas around the Cape Ortegal. The highest concentrations of ΣREE were found in fine sediments from confined inner parts of the Rias (up to 233 mg kg-1), while most of the sands contained 11-70 mg kg-1. ΣREE normalised to European Shale (ES) highlights the relative abundance of lanthanides (ΣREEN>6) near Cape Ortegal and the innermost ria zones. The ratio between light and heavy REE (L/H) showed lower values (4-11) around Cape Ortegal and the shelf while higher ratios (15-23) were detected in west of the Cape Estaca-de-Bares and in the inner Viveiro Ria due to elevated contributions of La and Ce. The L/H values normalised to ES reflects the importance of HREE in the adjacent area to Ortegal Complex (LN/HN<0.8) and the LREE (LN/HN>1.4) in the inner estuaries and west Cape Estaca-de-Bares. The highest REE individual ES normalised were measured in fine-grained sediments of the Mera and Sor estuaries. Sediments from the eastern shelf of Cape Ortegal presented enhanced ratios only for HREE. These results indicate that distribution of REE in the northern Galician region is highly depending on the neighbouring lithological pattern, contrasting with the situation found in the western Galician

Hydrocarbon Degradation Pathways used by Coastal Sediment Microbial Communities exposed to Crude Oil

NASA Astrophysics Data System (ADS)

Spaulding-Astudillo, F.; Sharrar, A.; Orcutt, B.

2016-02-01

The site-specific microbial community response to crude oil exposure in marine environments is not well described. Moreover, the abundance of genes implicated in long-chain alkane (LCA) and polycyclic aromatic hydrocarbon (PAH) degradation are not well understood. Coastal sediments from the Beaufort Sea, Gulf of Alaska, and Portland Harbor were treated with crude oil and incubated aerobically. Deep-sea sediments from the Gulf of Mexico were treated with the same crude oil and anaerobically incubated in situ for five months before recovery. Cycloclasticus, a known hydrocarbon-degrader, was abundant in all oiled, aerobic samples regardless of temperature, demonstrating a generalist oil-response strategy. Other hydrocarbon degrading bacteria showed differential response to either site or temperature. Primers for alkB, assA, bssA, and ncr, catabolic gene markers for aerobic LCA degradation, anaerobic LCA degradation, anaerobic LCA & PAH degradation, and anaerobic PAH degradation, respectively, were found in literature and tested on DNA extracts in a QPCR-based assay. Gene abundance was site and condition variable.

Dating of coastal marine sediments: 210Pb versus 137Cs signal on the Danube-influenced Black Sea shelf

NASA Astrophysics Data System (ADS)

Friedrich, Jana; Laptev, Gennady

2010-05-01

Coastal marine sediments represent a natural archive of pelagic processes, coastal erosion and river discharge of suspended matter. Correct dating of those sediments is a prerequisite for chronological reconstruction of the flux of pollutants and organic matter from the water column to the sediments and hence, the reconstruction of the pollution and eutrophication events. In the reconstruction of the sedimentation history during the pre-industrial and industrial periods, which usually spans the past 100 years, the natural occurring radionuclide 210Pb and the artificial radionuclides 137Cs and 241Am are widely applied tracers. 137Cs is used as an independent time marker for end the atmospheric bomb test fallout in 1963 and the Chernobyl accident in 1986. As the 137Cs signal is often weakened due to its mobility in sediments, 241Am, less mobile than 137Cs and derived from decay the bomb fallout of 241Pu, is used as a second time marker of the 1963 event. The northwestern shelf of the Black Sea has been seriously affected by eutrophication and pollution from the late 1960's to the mid-1990's, largely triggered by Danube River input of nutrients and pollutants. The aim of our study is ultimately to reconstruct the eutrophication history and recycling of nutrients following the deposition of organic matter. The ‘memory effect' of sediment recycling plays a critical role in maintaining eutrophic conditions in enclosed seas such as the Black Sea. Here we present results from sediment cores taken within the Danube River plume on the shallow northwestern shelf of the Black Sea. The cores have been dated in two laboratories to rule out artifacts. The sediment record is repeatedly interrupted by so-called turbidites that consist of stiff clay. The clay horizons display a drop in unsupported 210Pb and 137Cs and a higher signal of supported 210Pb than the non-clay horizons. Below the turbidite, the unsupported 210Pb and 137Cs increase again to values above the turbidite. This

Erosional history of the Appalachians as recordeed in detrital zircon fission-track ages and lithic detritus in Atlantic Coastal Plain sediments

USGS Publications Warehouse

Naeser, C.W.; Naeser, N.D.; Edwards, Lucy E.; Weems, Robert E.; Southworth, C. Scott; Newell, Wayne L.

2016-01-01

Comparison of fission-track (FT) ages of detrital zircons recovered from Atlantic Coastal Plain sediments to FT ages of zircons from bedrock in source terranes in the Appalachians provides a key to understanding the provenance of the sediments and, in turn, the erosional and depositional history of the Atlantic passive margin.In Appalachian source terranes, the oldest zircon fission-track (ZFT) ages from bedrock in the western Appalachians (defined for this paper as the Appalachian Plateau, Valley and Ridge, and far western Blue Ridge) are notably older than the oldest ages from bedrock in the eastern Appalachians (Piedmont and main part of the Blue Ridge). The age difference is seen both in ZFT sample ages and in individual zircon grain ages and reflects differences in the thermotectonic history of the rocks. In the east, ZFT data indicate that the rocks cooled from temperatures high enough to partially or totally reset ZFT ages during the Paleozoic and (or) Mesozoic. The majority of the rocks are interpreted to have cooled through the ZFT closure temperature (∼235 °C) at various times during the late Paleozoic Alleghanian orogeny. In contrast, most of the rocks sampled in the western Appalachians have never been heated to temperatures high enough to totally reset their ZFT ages. Reflecting their contrasting thermotectonic histories, nearly 80 percent of the sampled western rocks yield one or more zircon grains with very old FT ages, in excess of 800 Ma; zircon grains yielding FT ages this old have not been found in rocks in the Piedmont and main part of the Blue Ridge. The ZFT data suggest that the asymmetry of zircon ages of exposed bedrock in the eastern and western Appalachians was in evidence by no later than the Early Cretaceous and probably by the Late Triassic.Detrital zircon suites from sands collected in the Atlantic Coastal Plain provide a record of detritus eroded from source terranes in the Appalachians during the Mesozoic and Cenozoic. In Virginia

Are Sediments a Source of Fukushima Radiocesium for Marine Fauna in Coastal Japan?

NASA Astrophysics Data System (ADS)

Wang, C.; Fisher, N. S.; Baumann, Z.

2016-02-01

The Fukushima nuclear power plant accident in 2011 resulted in the largest accidental release of artificial radionuclides into the world's oceans. Among the fission products released in large quantities, 137Cs has the greatest potential for long-term impacts on marine biota and human consumers of seafood. In particular, some species of bottom fish near Fukushima were very contaminated and had higher radiocesium (134Cs and 137Cs) levels than pelagic fish in the same area, sometimes exceeding Japanese safety limits >4 years after the accident. Benthic invertebrates, many being prey items for bottom fish, show the same slow decrease in radiocesium as sediments, suggesting that contaminated sediment could be a source of radiocesium for benthic fauna. We evaluated the binding of 137Cs to sediments (Kd found to be 44-60 ml g-1) and found that bioturbation by the polychaete Nereis succinea greatly increased the initial release rate of Cs to overlying seawater. We also assessed the bioavailability of dissolved and sediment-bound Cs for deposit-feeding polychaetes, and its subsequent transfer to crabs and fish, and measured the influence of water temperature on Cs accumulation in fish. Assimilation efficiency (AE) of ingested 137Cs ranged from 16% in polychaetes ingesting sediments to 79% in fish ingesting worms. Efflux rate constants ranged from 5% d-1 for killifish to 40% d-1 for polychaetes. Animal absorption and retention of dissolved 137Cs were also measured. These parameters are used to model radiocesium bioaccumulation and trophic transfer in benthic food chains. Our results are consistent with the idea that sediments can be an important source of Cs for benthic food chains and help explain why some species of bottom fish remained more contaminated than pelagic fish in Japanese coastal waters.

Contribution of recent hurricanes to wetland sedimentation in coastal Louisiana

NASA Astrophysics Data System (ADS)

Liu, Kam-biu; Bianchette, Thomas; Zou, Lei; Qiang, Yi; Lam, Nina

2017-04-01

Hurricanes are important agents of sediment deposition in the wetlands of coastal Louisiana. Since Hurricanes Katrina and Rita of 2005, coastal Louisiana has been impacted by Hurricanes Gustav (2008), Ike (2008), and Isaac (2012). By employing the principles and methods of paleotempestology we have identified the storm deposits attributed to the three most recent hurricanes in several coastal lakes and swamps in Louisiana. However, the spatial distribution and volume of these storm depositions cannot be easily inferred from stratigraphic data derived from a few locations. Here we report on results from a GIS study to analyze the spatial and temporal patterns of storm deposition based on data extracted from the voluminous CRMS (Coastal Reference Monitoring System) database, which contains vertical accretion rate measurements obtained from 390 wetland sites over various time intervals during the past decade. Wetland accretion rates averaged about 2.89 cm/yr from stations sampled before Hurricane Isaac, 4.04 cm/yr during the 7-month period encompassing Isaac, and 2.38 cm/yr from sites established and sampled after Isaac. Generally, the wetland accretion rates attributable to the Isaac effects were 40% and 70% greater than before and after the event, respectively. Accretion rates associated with Isaac were highest at wetland sites along the Mississippi River and its tributaries instead of along the path of the hurricane, suggesting that freshwater flooding from fluvial channels, enhanced by the storm surge from the sea, is the main mechanism responsible for increased accretion in the wetlands. Our GIS work has recently been expanded to include other recent hurricanes. Preliminary results indicate that, for non-storm periods, the average wetland accretion rates between Katrina/Rita and Gustav/Ike was 2.58 cm/yr; that between Gustav/Ike and Isaac was 1.95 cm/yr; and that after Isaac was 2.37 cm/yr. In contrast, the accretion rates attributable to the effects of Gustav

Recovery and validation of historical sediment quality data from coastal and estuarine areas: An integrated approach

USGS Publications Warehouse

Manheim, F.T.; Buchholtz ten Brink, Marilyn R.; Mecray, E.L.

1998-01-01

A comprehensive database of sediment chemistry and environmental parameters has been compiled for Boston Harbor and Massachusetts Bay. This work illustrates methodologies for rescuing and validating sediment data from heterogeneous historical sources. It greatly expands spatial and temporal data coverage of estuarine and coastal sediments. The database contains about 3500 samples containing inorganic chemical, organic, texture and other environmental data dating from 1955 to 1994. Cooperation with local and federal agencies as well as universities was essential in locating and screening documents for the database. More than 80% of references utilized came from sources with limited distribution (gray literature). Task sharing was facilitated by a comprehensive and clearly defined data dictionary for sediments. It also served as a data entry template and flat file format for data processing and as a basis for interpretation and graphical illustration. Standard QA/QC protocols are usually inapplicable to historical sediment data. In this work outliers and data quality problems were identified by batch screening techniques that also provide visualizations of data relationships and geochemical affinities. No data were excluded, but qualifying comments warn users of problem data. For Boston Harbor, the proportion of irreparable or seriously questioned data was remarkably small (<5%), although concentration values for metals and organic contaminants spanned 3 orders of magnitude for many elements or compounds. Data from the historical database provide alternatives to dated cores for measuring changes in surficial sediment contamination level with time. The data indicate that spatial inhomogeneity in harbor environments can be large with respect to sediment-hosted contaminants. Boston Inner Harbor surficial sediments showed decreases in concentrations of Cu, Hg, and Zn of 40 to 60% over a 17-year period.A comprehensive database of sediment chemistry and environmental

Process recognition in multi-element soil and stream-sediment geochemical data

USGS Publications Warehouse

Grunsky, E.C.; Drew, L.J.; Sutphin, D.M.

2009-01-01

Stream-sediment and soil geochemical data from the Upper and Lower Coastal Plains of South Carolina (USA) were studied to determine relationships between soils and stream sediments. From multi-element associations, characteristic compositions were determined for both media. Primary associations of elements reflect mineralogy, including heavy minerals, carbonates and clays, and the effects of groundwater. The effects of groundwater on element concentrations are more evident in soils than stream sediments. A "winnowing index" was created using ratios of Th to Al that revealed differing erosional and depositional environments. Both soils and stream sediments from the Upper and Lower Coastal Plains show derivation from similar materials and subsequent similar multi-element relationships, but have some distinct differences. In the Lower Coastal Plain, soils have high values of elements concentrated in heavy minerals (Ce, Y, Th) that grade into high values of elements concentrated into finer-grain-size, lower-density materials, primarily comprised of carbonates and feldspar minerals (Mg, Ca, Na, K, Al). These gradational trends in mineralogy and geochemistry are inferred to reflect reworking of materials during marine transgressions and regressions. Upper Coastal Plain stream-sediment geochemistry shows a higher winnowing index relative to soil geochemistry. A comparison of the 4 media (Upper Coastal Plain soils and stream sediments and Lower Coastal Plain soils and stream sediments) shows that Upper Coastal Plain stream sediments have a higher winnowing index and a higher concentration of elements contained within heavy minerals, whereas Lower Coastal Plain stream sediments show a strong correlation between elements typically contained within clays. It is not possible to calculate a functional relationship between stream sediment-soil compositions for all elements due to the complex history of weathering, deposition, reworking and re-deposition. However, depending on

A statistical experiment design approach for optimizing biodegradation of weathered crude oil in coastal sediments.

PubMed

Mohajeri, Leila; Aziz, Hamidi Abdul; Isa, Mohamed Hasnain; Zahed, Mohammad Ali

2010-02-01

This work studied the bioremediation of weathered crude oil (WCO) in coastal sediment samples using central composite face centered design (CCFD) under response surface methodology (RSM). Initial oil concentration, biomass, nitrogen and phosphorus concentrations were used as independent variables (factors) and oil removal as dependent variable (response) in a 60 days trial. A statistically significant model for WCO removal was obtained. The coefficient of determination (R(2)=0.9732) and probability value (P<0.0001) demonstrated significance for the regression model. Numerical optimization based on desirability function were carried out for initial oil concentration of 2, 16 and 30 g per kg sediment and 83.13, 78.06 and 69.92 per cent removal were observed respectively, compare to 77.13, 74.17 and 69.87 per cent removal for un-optimized results.

Global diffusive fluxes of methane in marine sediments

NASA Astrophysics Data System (ADS)

Egger, Matthias; Riedinger, Natascha; Mogollón, José M.; Jørgensen, Bo Barker

2018-06-01

Anaerobic oxidation of methane provides a globally important, yet poorly constrained barrier for the vast amounts of methane produced in the subseafloor. Here we provide a global map and budget of the methane flux and degradation in diffusion-controlled marine sediments in relation to the depth of the methane oxidation barrier. Our new budget suggests that 45-61 Tg of methane are oxidized with sulfate annually, with approximately 80% of this oxidation occurring in continental shelf sediments (<200 m water depth). Using anaerobic oxidation as a nearly quantitative sink for methane in steady-state diffusive sediments, we calculate that 3-4% of the global organic carbon flux to the seafloor is converted to methane. We further report a global imbalance of diffusive methane and sulfate fluxes into the sulfate-methane transition with no clear trend with respect to the corresponding depth of the methane oxidation barrier. The observed global mean net flux ratio between sulfate and methane of 1.4:1 indicates that, on average, the methane flux to the sulfate-methane transition accounts for only 70% of the sulfate consumption in the sulfate-methane transition zone of marine sediments.

Coastal system mapping: a new approach to formalising and conceptualising the connectivity of large-scale coastal systems

NASA Astrophysics Data System (ADS)

French, J.; Burningham, H.; Whitehouse, R.

2010-12-01

The concept of the coastal sediment cell has proved invaluable as a basis for estimating sediment budgets and as a framework for coastal management. However, whilst coastal sediment cells are readily identified on compartmentalised coastlines dominated by beach-grade material, the cell concept is less suited to handling broader linkages between estuarine, coastal and offshore systems, and for incorporating longer-range suspended sediment transport. We present a new approach to the conceptualisation of large-scale coastal geomorphic systems based on a hierarchical classification of component landforms and management interventions and mapping of the interactions between them. Coastal system mapping is founded on a classification that identifies high-level landform features, low-level landform elements and engineering interventions. Geomorphic features define the large-scale organisation of a system and include landforms that define gross coastal configuration (e.g. headland, bay) as well as fluvial, estuarine and offshore sub-systems that exchange sediment with and influence the open coast. Detailed system structure is mapped out with reference to a larger set of geomorphic elements (e.g. cliff, dune, beach ridge). Element-element interactions define cross-shore linkages (conceptualised as hinterland, backshore and foreshore zones) and alongshore system structure. Both structural and non-structural engineering interventions are also represented at this level. Element-level mapping is rationalised to represent alongshore variation using as few elements as possible. System linkages include both sediment transfer pathways and influences not associated with direct mass transfer (e.g. effect of a jetty at an inlet). A formal procedure for capturing and graphically representing coastal system structure has been developed around free concept mapping software, CmapTools (http://cmap.ihmc.us). Appended meta-data allow geographic coordinates, data, images and literature

Bacteria in deep coastal plain sediments of Maryland: A possible source of CO2 to groundwater

NASA Astrophysics Data System (ADS)

Chapelle, Francis H.; Zelibor, Joseph L., Jr.; Grimes, D. Jay; Knobel, Leroy L.

1987-08-01

Nineteen cores of unconsolidated Coastal Plain sediments obtained from depths of 14 to 182 m below land surface near Waldorf, Maryland, were collected and examined for metabolically active bacteria. The age of the sediments cored range from Miocene to Early Cretaceous. Acridine orange direct counts of total (viable and nonviable) bacteria in core subsamples ranged from 108 to 104 bacteria/g of dry sediment. Direct counts of viable bacteria ranged from 106 to 103 bacteria/g of dry sediment. Three cores contained viable methanogenic bacteria, and seven cores contained viable sulfate-reducing bacteria. The observed presence of bacteria in these sediments suggest that heterotrophic bacterial metabolism, with lignitic organic material as the primary substrate, is a plausible source of CO2 to groundwater. However, the possibility that abiotic processes also produce CO2 cannot be ruled out. Estimated rates of CO2 production in the noncalcareous Magothy/Upper Patapsco and Lower Patapsco aquifers based on mass balance of dissolved inorganic carbon, groundwater flow rates, and flow path segment lengths are in the range 10-3 to 10-5 mmol L-1 yr-1. Isotope balance calculations suggest that aquifer-generated CO2 is much heavier isotopically (˜—10 to + 5 per mil) than lignite (˜-24 per mil) present in these sediments. This may reflect isotopic fractionation during methanogenesis and possibly other bacterially mediated processes.

Simulation of the fate of faecal bacteria in estuarine and coastal waters based on a fractionated sediment transport model

NASA Astrophysics Data System (ADS)

Yang, Chen; Liu, Ying

2017-08-01

A two-dimensional depth-integrated numerical model is refined in this paper to simulate the hydrodynamics, graded sediment transport process and the fate of faecal bacteria in estuarine and coastal waters. The sediment mixture is divided into several fractions according to the grain size. A bed evolution model is adopted to simulate the processes of the bed elevation change and sediment grain size sorting. The faecal bacteria transport equation includes enhanced source and sink terms to represent bacterial kinetic transformation and disappearance or reappearance due to sediment deposition or re-suspension. A novel partition ratio and dynamic decay rates of faecal bacteria are adopted in the numerical model. The model has been applied to the turbid water environment in the Bristol Channel and Severn estuary, UK. The predictions by the present model are compared with field data and those by non-fractionated model.

Renewed soil erosion and remobilisation of radioactive sediment in Fukushima coastal rivers after the 2013 typhoons.

PubMed

Evrard, Olivier; Chartin, Caroline; Onda, Yuichi; Lepage, Hugo; Cerdan, Olivier; Lefèvre, Irène; Ayrault, Sophie

2014-04-03

Summer typhoons and spring snowmelt led to the riverine spread of continental Fukushima fallout to the coastal plains of Northeastern Japan and the Pacific Ocean. Four fieldwork campaigns based on measurement of radioactive dose rates in fine riverine sediment that has recently deposited on channel bed-sand were conducted between November 2011 and May 2013 to document the spread of fallout by rivers. After a progressive decrease in the fresh riverine sediment doses rates between 2011 and early spring in 2013, a fifth campaign conducted in November 2013 showed that they started to increase again after the occurrence of violent typhoons. We show that this increase in dose rates was mostly due to remobilization of contaminated material that was temporarily stored in river channels or, more importantly, in dam reservoirs of the region during the typhoons. In addition, supply of particles from freshly eroded soils in autumn 2013 was the most important in areas where decontamination works are under progress. Our results underline the need to monitor the impact of decontamination works and dam releases in the region, as they may provide a continuous source of radioactive contamination to the coastal plains and the Pacific Ocean during the coming years.

Exploring Metabolic Activities of Deeply Buried Microbial Communities in Oxic Sediments Underlying Oligotrophic Open Ocean Gyres

NASA Astrophysics Data System (ADS)

Ziebis, W.; Patel, A.; Krupke, A.; Ferdelman, T. G.

2012-12-01

The vast majority of scientific drilling expeditions have focused on continental margins where oxygen is depleted within the surface (1 m) layer of the sediment and buried organic carbon sustains anaerobic microbial communities. IODP expeditions 329 (South Pacific Gyre) and 336 (Mid-Atlantic Ridge - North Pond) took place in oligotrophic open ocean regions, which constitute 48% of the world ocean. These expeditions have revealed that unlike continental margins the seafloor underneath oligotrophic ocean gyres is oxic. Within the South Pacific Gyre (SPG) dissolved oxygen persists throughout the sediment cover and reaches the basement even at the sites with thickest sediment cover (62 and 75 mbsf). North Pond is a sedimented pond (< 300 m sediment cover) located on the flank of the Mid-Atlantic Ridge underlying the oligotrophic central Atlantic. Here, oxygen diffuses upward from the basaltic aquifer underlying the sediment package in addition to deep oxygen penetration from the overlying water. Oxygen is the main electron acceptor available for sub-seafloor microbial activity in these vast oligotrophic open ocean regions. Microbial cells are present and active in the organic poor sediments, albeit numbers are near or below the detection limit (<103 cm-3 sediment) in the extremely organic-poor sediment of the SPG (below 2 -15 m sediment depth, depending on the location). However, we have very limited knowledge on the microbial community compositions and metabolic activities. Even the dominance of bacteria or archaea remains largely elusive. It has been suggested that while archaea dominate in the anoxic sediments of continental margins bacteria might be more abundant in the oxic seafloor underlying oligotrophic ocean gyres where aerobic respiration prevails. Experiments were conducted with sediment samples from the SPG and North Pond to explore the pattern of microbial diversity and metabolic activity using a suite of radio and stable isotopes in combination with

A Quiet Riot: Furthering the discussion on aerobic heterotrophy in deep sediments

NASA Astrophysics Data System (ADS)

Russell, J. A., III; Biddle, J.

2014-12-01

North Pond, a sediment deposit ringed by basalt outcrops just west of the Mid-Atlantic Ridge, remains a site of intense study of the subseafloor biosphere. During IODP Expedition 336, core samples of sediment and basalt were drilled and permanent CORK observatories were installed in the basalt crust. Heterotrophic enrichments were started aboard ship and multiple aerobic, heterotrophic bacterial isolates were obtained from two sediment horizons. Isolate identities were compared to sequences from drilling fluid and surrounding sediment to establish the likelihood of their sedimentary source. Three isolates currently in pure culture are from site U1382B and include an Arthrobacter species from 4 meters below seafloor (mbsf) as well as a Paracoccus and Pseudomonas species from 70 mbsf. All isolates grow at tested temperatures of 4 to 37°C. Only the Arthrobacter species grows at 42°C and no isolates grew at 50°C. The presence of aerobic microorganisms at these depths is consistent with previously published oxygen profiles of site U1382B where O2 is present in low amounts (10 to 20μm) at both 4 mbsf (originating from overlying seawater) and 70 mbsf (originating from subseafloor aquifer leaching into deep sediment), yet substantial enough to support aerobic heterotrophy. Despite similar oxygen concentrations, two key differences between these depths are the origin and quality of organic matter and the surrounding lithology. Section 1H4 from site U1382B, where the Arthrobacter species was isolated, consists primarily of a nanofossil ooze. Section 8H6 (~70 mbsf) is much more clay-rich. Previous explorations of microbial heterotrophy in North Pond sediments using 14C-acetate have suggested that this metabolism may be linked to particular lithologies. A 2011 study noted higher rates of potential aerobic heterotrophy in sandy and clay-rich layers compared to nannofossil ooze layers. Since isolates are from different depths, ages and lithologies they can be used to examine

Concentrations and sources of polycyclic aromatic hydrocarbons in surface coastal sediments of the northern Gulf of Mexico

PubMed Central

2014-01-01

Background Coastal sediments in the northern Gulf of Mexico have a high potential of being contaminated by petroleum hydrocarbons, such as polycyclic aromatic hydrocarbons (PAHs), due to extensive petroleum exploration and transportation activities. In this study we evaluated the spatial distribution and contamination sources of PAHs, as well as the bioavailable fraction in the bulk PAH pool, in surface marsh and shelf sediments (top 5 cm) of the northern Gulf of Mexico. Results PAH concentrations in this region ranged from 100 to 856 ng g−1, with the highest concentrations in Mississippi River mouth sediments followed by marsh sediments and then the lowest concentrations in shelf sediments. The PAH concentrations correlated positively with atomic C/N ratios of sedimentary organic matter (OM), suggesting that terrestrial OM preferentially sorbs PAHs relative to marine OM. PAHs with 2 rings were more abundant than those with 5–6 rings in continental shelf sediments, while the opposite was found in marsh sediments. This distribution pattern suggests different contamination sources between shelf and marsh sediments. Based on diagnostic ratios of PAH isomers and principal component analysis, shelf sediment PAHs were petrogenic and those from marsh sediments were pyrogenic. The proportions of bioavailable PAHs in total PAHs were low, ranging from 0.02% to 0.06%, with higher fractions found in marsh than shelf sediments. Conclusion PAH distribution and composition differences between marsh and shelf sediments were influenced by grain size, contamination sources, and the types of organic matter associated with PAHs. Concentrations of PAHs in the study area were below effects low-range, suggesting a low risk to organisms and limited transfer of PAHs into food web. From the source analysis, PAHs in shelf sediments mainly originated from direct petroleum contamination, while those in marsh sediments were from combustion of fossil fuels. PMID:24641695

Changes of freshwater-lens thickness in basaltic island aquifers overlain by thick coastal sediments

USGS Publications Warehouse

Rotzoll, Kolja; Oki, Delwyn S.; El-Kadi, Aly I.

2010-01-01

Freshwater-lens thickness and long-term changes in freshwater volume in coastal aquifers are commonly assessed through repeated measurement of salinity profiles from monitor wells that penetrate into underlying salt water. In Hawaii, the thickest measured freshwater lens is currently 262 m in dike-free, volcanic-rock aquifers that are overlain by thick coastal sediments. The midpoint depth (depth where salinity is 50% salt water) between freshwater and salt water can serve as an indicator for freshwater thickness. Most measured midpoints have risen over the past 40 years, indicating a shrinking lens. The mean rate of rise of the midpoint from 1999–2009 varied locally, with faster rates in highly developed areas (1.0 m/year) and slower rates in less developed areas (0.5 m/year). The thinning of the freshwater lenses is the result of long-term groundwater withdrawal and reduced recharge. Freshwater/salt-water interface locations predicted from measured water levels and the Ghyben-Herzberg principle may be deeper than measured midpoints during some periods and shallower during other periods, although depths may differ up to 100 m in some cases. Moreover, changes in the midpoint are slower than changes in water level. Thus, water levels may not be a reliable indicator of the amount of freshwater in a coastal aquifer.

Presence of Nitrate-Accumulating Sulfur Bacteria and Their Influence on Nitrogen Cycling in a Shallow Coastal Marine Sediment

PubMed Central

Sayama, Mikio

2001-01-01

Nitrate flux between sediment and water, nitrate concentration profile at the sediment-water interface, and in situ sediment denitrification activity were measured seasonally at the innermost part of Tokyo Bay, Japan. For the determination of sediment nitrate concentration, undisturbed sediment cores were sectioned into 5-mm depth intervals and each segment was stored frozen at −30°C. The nitrate concentration was determined for the supernatants after centrifuging the frozen and thawed sediments. Nitrate in the uppermost sediment showed a remarkable seasonal change, and its seasonal maximum of up to 400 μM was found in October. The directions of the diffusive nitrate fluxes predicted from the interfacial concentration gradients were out of the sediment throughout the year. In contrast, the directions of the total nitrate fluxes measured by the whole-core incubation were into the sediment at all seasons. This contradiction between directions indicates that a large part of the nitrate pool extracted from the frozen surface sediments is not a pore water constituent, and preliminary examinations demonstrated that the nitrate was contained in the intracellular vacuoles of filamentous sulfur bacteria dwelling on or in the surface sediment. Based on the comparison between in situ sediment denitrification activity and total nitrate flux, it is suggested that intracellular nitrate cannot be directly utilized by sediment denitrification, and the probable fate of the intracellular nitrate is hypothesized to be dissimilatory reduction to ammonium. The presence of nitrate-accumulating sulfur bacteria therefore may lower nature's self-purification capacity (denitrification) and exacerbate eutrophication in shallow coastal marine environments. PMID:11472923

Distribution and region-specific sources of Dechlorane Plus in marine sediments from the coastal East China Sea.

PubMed

Wang, Guoguang; Peng, Jialin; Hao, Ting; Liu, Yao; Zhang, Dahai; Li, Xianguo

2016-12-15

Dechlorane Plus (DP) is a highly chlorinated flame retardant and found to be ubiquitously present in the environment. We reported here the first record of DP in sediments from the coastal East China Sea (ECS). DP was detected in most of the surface sediments, and the concentrations ranged from 14.8 to 198pg/g dry weight (dw) with a mean value of 64.4pg/g dw. Overall, DP levels exhibited a seaward decreasing trend from the inshore toward outer sea. The fractional abundance of anti-DP (f anti ) showed regional discrepancies, attributing to different environmental behaviors of DP isomers. Depth profiles of DP in a sediment core from estuarine environment showed distinct fluctuation, and the core in open sea had stable deposition environment with two peak values of DP in ~1978 and 2000. The f anti exhibited downward decreasing trend prior to mid-1950s, indicating a preferential degradation of anti-DP and/or a greater adsorption capacity of syn-DP after its burial. Lignin and lipid biomarkers (∑C 27 +C 29 +C 31 n-alkanes) of terrestrial organic matters were introduced to identify region-specific sources of DP, and the results showed that DP in the northern inner shelf, southern inner shelf of 29 °N and mud area southwest of Cheju Island was mainly come from Yangtze River (YR) input, surface runoffs after discharge of local sources close to the Taizhou-Wenzhou Region and the atmospheric deposition from the North China and East Asia, respectively. The coastal ECS was an important reservoir of DP in the world, with mass inventory of approximately 310.7kg in the surface sediments (0-5cm). Copyright © 2016 Elsevier B.V. All rights reserved.

Evaluating Environment, Erosion and Sedimentation Aspects in Coastal Area to Determine Priority Handling (A Case Study in Jepara Regency, northern Central Java, Indonesia)

NASA Astrophysics Data System (ADS)

Wahyudi, S. I.; Adi, H. P.

2018-04-01

Many areas of the northern coastal in Central Java, Indonesia, have been suffering from damage. One of the areas is Jepara, which has been experiencing this kind of damage for 7.6 kilometres from total 72 kilometres long beach. All damages are mostly caused by coastal erosion, sedimentation, environment and tidal flooding. Several efforts have been done, such as replanting mangroves, building revetment and groins, but it still could not mitigated the coastal damage. The purposes of this study are to map the coastal damages, to analyze handling priority and to determine coastal protection model. The method used are by identifying and plotting the coastal damage on the map, assessing score of each variable, and determining the handling priority and suitable coastal protection model. There are five levels of coastal damage used in this study, namely as light damage, medium, heavy, very heavy, and extremely heavy. Based on the priority assessment of coastal damage, it needs to be followed up by designing in detail and implementing through soft structure for example mangrove, sand nourishes and hard structure, such as breakwater, groins and revetment.

The release of dissolved nutrients and metals from coastal sediments due to resuspension

USGS Publications Warehouse

Kalnejais, Linda H.; Martin, William R.; Bothner, Michael H.

2010-01-01

Coastal sediments in many regions are impacted by high levels of contaminants. Due to a combination of shallow water depths, waves, and currents, these sediments are subject to regular episodes of sediment resuspension. However, the influence of such disturbances on sediment chemistry and the release of solutes is poorly understood. The aim of this study is to quantify the release of dissolved metals (iron, manganese, silver, copper, and lead) and nutrients due to resuspension in Boston Harbor, Massachusetts, USA. Using a laboratory-based erosion chamber, a range of typical shear stresses was applied to fine-grained Harbor sediments and the solute concentration at each shear stress was measured. At low shear stress, below the erosion threshold, limited solutes were released. Beyond the erosion threshold, a release of all solutes, except lead, was observed and the concentrations increased with shear stress. The release was greater than could be accounted for by conservative mixing of porewaters into the overlying water, suggesting that sediment resuspension enhances the release of nutrients and metals to the dissolved phase. To address the long-term fate of resuspended particles, samples from the erosion chamber were maintained in suspension for 90. h. Over this time, 5-7% of the particulate copper and silver was released to the dissolved phase, while manganese was removed from solution. Thus resuspension releases solutes both during erosion events and over a longer timescale due to reactions of suspended particles in the water column. The magnitude of the annual solute release during erosion events was estimated by coupling the erosion chamber results with a record of bottom shear stresses simulated by a hydrodynamic model. The release of dissolved copper, lead, and phosphate due to resuspension is between 2% and 10% of the total (dissolved plus particulate phase) known inputs to Boston Harbor. Sediment resuspension is responsible for transferring a significant

Effects of salinity and particle concentration on sediment hydrodynamics and critical bed-shear-stress for erosion of fine grained sediments used in wetland restoration projects

NASA Astrophysics Data System (ADS)

Ghose-Hajra, M.; McCorquodale, A.; Mattson, G.; Jerolleman, D.; Filostrat, J.

2015-03-01

Sea-level rise, the increasing number and intensity of storms, oil and groundwater extraction, and coastal land subsidence are putting people and property at risk along Louisiana's coast, with major implications for human safety and economic health of coastal areas. A major goal towards re-establishing a healthy and sustainable coastal ecosystem has been to rebuild Louisiana's disappearing wetlands with fine grained sediments that are dredged or diverted from nearby rivers, channels and lakes to build land in open water areas. A thorough geo-hydrodynamic characterization of the deposited sediments is important in the correct design and a more realistic outcome assessment of the long-term performance measures for ongoing coastal restoration projects. This paper evaluates the effects of salinity and solid particle concentration on the re-suspension characteristics of fine-grained dredged sediments obtained from multiple geographic locations along the Gulf coast. The critical bed-shear-stress for erosion has been evaluated as a function of sedimentation time. The sediment hydrodynamic properties obtained from the laboratory testing were used in a numerical coastal sediment distribution model to aid in evaluating sediment diversions from the Mississippi River into Breton Sound and Barataria Bay.

Taxonomic profiling of bacterial community structure from coastal sediment of Alang-Sosiya shipbreaking yard near Bhavnagar, India.

PubMed

Patel, Vilas; Munot, Hitendra; Shah, Varun; Shouche, Yogesh S; Madamwar, Datta

2015-12-30

The Alang-Sosiya shipbreaking yard (ASSBY) is considered the largest of its kind in the world, and a major source of anthropogenic pollutants. The aim of this study was to investigate the impact of shipbreaking activities on the bacterial community structure with a combination of culture-dependent and culture-independent approaches. In the culture-dependent approach, 200 bacterial cultures were isolated and analyzed by molecular fingerprinting and 16S ribosomal RNA (r-RNA) gene sequencing, as well as being studied for degradation of polycyclic aromatic hydrocarbons (PAHs). In the culture-independent approach, operational taxonomic units (OTUs) were related to eight major phyla, of which Betaproteobacteria (especially Acidovorax) was predominantly found in the polluted sediments of ASSBY and Gammaproteobacteria in the pristine sediment sample. The statistical approaches showed a significant difference in the bacterial community structure between the pristine and polluted sediments. To the best of our knowledge, this is the first study investigating the effect of shipbreaking activity on the bacterial community structure of the coastal sediment at ASSBY. Copyright © 2015. Published by Elsevier Ltd.

Sediment bacterial community structures and their predicted functions implied the impacts from natural processes and anthropogenic activities in coastal area.

PubMed

Su, Zhiguo; Dai, Tianjiao; Tang, Yushi; Tao, Yile; Huang, Bei; Mu, Qinglin; Wen, Donghui

2018-06-01

Coastal ecosystem structures and functions are changing under natural and anthropogenic influences. In this study, surface sediment samples were collected from disturbed zone (DZ), near estuary zone (NEZ), and far estuary zone (FEZ) of Hangzhou Bay, one of the most seriously polluted bays in China. The bacterial community structures and predicted functions varied significantly in different zones. Firmicutes were found most abundantly in DZ, highlighting the impacts of anthropogenic activities. Sediment total phosphorus was most influential on the bacterial community structures. Predicted by PICRUSt analysis, DZ significantly exceeded FEZ and NEZ in the subcategory of Xenobiotics Biodegradation and Metabolism; and DZ enriched all the nitrate reduction related genes, except nrfA gene. Seawater salinity and inorganic nitrogen, respectively as the representative natural and anthropogenic factor, performed exact-oppositely in nitrogen metabolism functions. The changes of bacterial community compositions and predicted functions provide a new insight into human-induced pollution impacts on coastal ecosystem. Copyright © 2018 Elsevier Ltd. All rights reserved.

Spatial and temporal distribution of tributyltin (TBT) in seawater, sediments and bivalves from coastal areas of Korea during 2001-2005.

PubMed

Choi, Minkyu; Choi, Hee-Gu; Moon, Hyo-Bang; Kim, Gui-Young

2009-04-01

Tributyltin (TBT) concentrations were determined in seawater, sediments and bivalve samples collected from Korean coastal areas during 2001-2005, to investigate the levels and temporal variation in TBT contamination in relation to the timing of the imposition of regulations on TBT use in Korea. TBT concentrations ranged from <5.0 to 164 ng/L in seawater, from <7.0 to 9,576 ng/g dry weight in sediments, and from <7.0 to 6,296 ng/g dry weight in bivalves. The highest concentrations of TBT were found at locations close to intensive shipping traffic and industrial complexes, and the contamination at some hot spot areas was high enough to cause harmful effects on marine organisms. TBT concentrations and their occurrence in Korean coastal waters have been decreasing annually. In particular, TBT concentrations in seawater have dramatically decreased. This result is consistent with regulations and bans on the use of TBT in Korea.

Impact of Seasonal Hypoxia on Activity and Community Structure of Chemolithoautotrophic Bacteria in a Coastal Sediment

PubMed Central

Lipsewers, Yvonne A.; Vasquez-Cardenas, Diana; Seitaj, Dorina; Schauer, Regina; Hidalgo-Martinez, Silvia; Meysman, Filip J. R.

2017-01-01

ABSTRACT Seasonal hypoxia in coastal systems drastically changes the availability of electron acceptors in bottom water, which alters the sedimentary reoxidation of reduced compounds. However, the effect of seasonal hypoxia on the chemolithoautotrophic community that catalyzes these reoxidation reactions is rarely studied. Here, we examine the changes in activity and structure of the sedimentary chemolithoautotrophic bacterial community of a seasonally hypoxic saline basin under oxic (spring) and hypoxic (summer) conditions. Combined 16S rRNA gene amplicon sequencing and analysis of phospholipid-derived fatty acids indicated a major temporal shift in community structure. Aerobic sulfur-oxidizing Gammaproteobacteria (Thiotrichales) and Epsilonproteobacteria (Campylobacterales) were prevalent during spring, whereas Deltaproteobacteria (Desulfobacterales) related to sulfate-reducing bacteria prevailed during summer hypoxia. Chemolithoautotrophy rates in the surface sediment were three times higher in spring than in summer. The depth distribution of chemolithoautotrophy was linked to the distinct sulfur oxidation mechanisms identified through microsensor profiling, i.e., canonical sulfur oxidation, electrogenic sulfur oxidation by cable bacteria, and sulfide oxidation coupled to nitrate reduction by Beggiatoaceae. The metabolic diversity of the sulfur-oxidizing bacterial community suggests a complex niche partitioning within the sediment, probably driven by the availability of reduced sulfur compounds (H2S, S0, and S2O32−) and electron acceptors (O2 and NO3−) regulated by seasonal hypoxia. IMPORTANCE Chemolithoautotrophic microbes in the seafloor are dependent on electron acceptors, like oxygen and nitrate, that diffuse from the overlying water. Seasonal hypoxia, however, drastically changes the availability of these electron acceptors in the bottom water; hence, one expects a strong impact of seasonal hypoxia on sedimentary chemolithoautotrophy. A

Impact of Seasonal Hypoxia on Activity and Community Structure of Chemolithoautotrophic Bacteria in a Coastal Sediment.

PubMed

Lipsewers, Yvonne A; Vasquez-Cardenas, Diana; Seitaj, Dorina; Schauer, Regina; Hidalgo-Martinez, Silvia; Sinninghe Damsté, Jaap S; Meysman, Filip J R; Villanueva, Laura; Boschker, Henricus T S

2017-05-15

Seasonal hypoxia in coastal systems drastically changes the availability of electron acceptors in bottom water, which alters the sedimentary reoxidation of reduced compounds. However, the effect of seasonal hypoxia on the chemolithoautotrophic community that catalyzes these reoxidation reactions is rarely studied. Here, we examine the changes in activity and structure of the sedimentary chemolithoautotrophic bacterial community of a seasonally hypoxic saline basin under oxic (spring) and hypoxic (summer) conditions. Combined 16S rRNA gene amplicon sequencing and analysis of phospholipid-derived fatty acids indicated a major temporal shift in community structure. Aerobic sulfur-oxidizing Gammaproteobacteria ( Thiotrichales ) and Epsilonproteobacteria ( Campylobacterales ) were prevalent during spring, whereas Deltaproteobacteria ( Desulfobacterales ) related to sulfate-reducing bacteria prevailed during summer hypoxia. Chemolithoautotrophy rates in the surface sediment were three times higher in spring than in summer. The depth distribution of chemolithoautotrophy was linked to the distinct sulfur oxidation mechanisms identified through microsensor profiling, i.e., canonical sulfur oxidation, electrogenic sulfur oxidation by cable bacteria, and sulfide oxidation coupled to nitrate reduction by Beggiatoaceae The metabolic diversity of the sulfur-oxidizing bacterial community suggests a complex niche partitioning within the sediment, probably driven by the availability of reduced sulfur compounds (H 2 S, S 0 , and S 2 O 3 2- ) and electron acceptors (O 2 and NO 3 - ) regulated by seasonal hypoxia. IMPORTANCE Chemolithoautotrophic microbes in the seafloor are dependent on electron acceptors, like oxygen and nitrate, that diffuse from the overlying water. Seasonal hypoxia, however, drastically changes the availability of these electron acceptors in the bottom water; hence, one expects a strong impact of seasonal hypoxia on sedimentary chemolithoautotrophy. A

Integrated Coastal Data at NOAA's National Centers for Environmental Information (NCEI)

NASA Astrophysics Data System (ADS)

Stroker, K. J.; Mesick, S.

2016-02-01

The National Centers for Environmental Information (NCEI) provides stewardship for the world's largest collection of data enabling communities to ensure preparedness and resilience to coastal hazards. In this unique collection, NCEI has the responsibility to ensure access to high-resolution coastal tide gauge data, coastal bathymetry and topography data, global geologic hazards data (tsunami, earthquakes, and volcanic eruptions) as part of the World Data Center for Geophysics, and are expanding the archive to support other coastal data streams, such as coastal current velocity data important for safety in ports and harbors. These data, collected by partners from academia, federal and state governments, support a wide variety of uses. Ensuring accurate, high quality metadata for these data are essential for their proper use. In addition to providing easy access to partner data to extend the use of these data, NCEI also develops scientifically-validated derived products. One such example is our collection of high-resolution, coastal digital elevation models (DEMs) that integrate ocean bathymetry and land topography to support NOAA's mission to understand and predict changes in Earth's environment, and conserve and manage coastal and marine resources to meet our Nation's economic, social, and environmental needs. These DEMs can be used for modeling of coastal processes (tsunami inundation, storm surge, sea-level rise, contaminant dispersal, etc.), ecosystems management and habitat research, coastal and marine spatial planning, and hazard mitigation and community preparedness. Additionally, the US Extended Continental Shelf (ECS) project is determining the outer limits of the US continental shelf though the collection and analysis of data that describe the depth, shape and geophysical characteristics of the seabed and sub-seafloor. These data are all housed and stewarded at NCEI. The paper will discuss the wide variety of coastal data maintained and stewarded at NCEI

Grain-size analysis and sediment dynamics of hurricane-induced event beds in a coastal New England pond

NASA Astrophysics Data System (ADS)

Castagno, K. A.; Ruehr, S. A.; Donnelly, J. P.; Woodruff, J. D.

2017-12-01

Coastal populations have grown increasingly susceptible to the impacts of tropical cyclone events as they grow in size, wealth, and infrastructure. Changes in tropical cyclone frequency and intensity, augmented by a changing climate, pose an increasing threat of property damage and loss of life. Reconstructions of intense-hurricane landfalls from a series of southeastern New England sediment cores identify a series of events spanning the past 2,000 years. Though the frequency of these landfalls is well constrained, the intensity of these storms, particularly those for which no historical record exists, is not. This study analyzes the grain-size distribution of major storm event beds along a transect of sediment cores from a kettle pond in Falmouth, MA. The grain-size distribution of each event is determined using an image processing, size, and shape analyzer. The depositional patterns and changes in grain-size distribution in these fine-grained systems may both spatially and temporally reveal characteristics of both storm intensity and the nature of sediment deposition. An inverse-modeling technique using this kind of grain-size analysis to determine past storm intensity has been explored in back-barrier lagoon systems in the Caribbean, but limited research has assessed its utility to assess deposits from back-barrier ponds in the northeastern United States. Increases in hurricane intensity may be closely tied to increases in sea surface temperature. As such, research into these prehistoric intervals of increased frequency and/or intensity provides important insight into the current and future hurricane risks facing coastal communities in New England.

The Influence of Coastal Wetland Zonation on Surface Sediment and Porewater Mercury Speciation

NASA Astrophysics Data System (ADS)

Marvin-DiPasquale, M. C.; Windham-Myers, L.; Wilson, A. M.; Buck, T.; Smith, E.

2014-12-01

An investigation of mercury (Hg) speciation in saltmarsh surface sediment (top 0-2 cm) and porewater (integrated 0-50 cm) was conducted along two monitoring well transects established within North Inlet Estuary (S. Carolina, USA) as part of the NOAA sponsored National Estuarine Research Reserve (NERR) network. Transects were perpendicular to the shoreline, from the forested uplands to the edge of the tidal channel, and traversed a range of vegetated zones from the high marsh (pickleweed, rush, and salt panne-dominated) to the low marsh (cordgrass dominated), as mediated by elevation and tidal inundation. Sediment grain size and organic content explained 95% of the variability in the distribution of total Hg (THg) in surface sediment. Tin-reducible 'reactive' mercury (HgR) concentration was 10X greater in the high marsh, compared to the low marsh, and increased sharply with decreasing sediment pH values below pH=6. The percentage of THg as HgR decreased as sediment redox conditions became more reducing. There were no significant differences in surface sediment methylmercury (MeHg) concentrations between high and low marsh zones. In contrast, porewater MeHg concentrations were 5X greater in the high marsh compared to the low marsh. As a percentage of THg, mean porewater %MeHg was 23% in the low marsh and 51% in the high marsh, reaching levels of 73-89% in a number of high marsh sites. Calculations of partitioning between porewater and the solid phase suggest stronger binding to particles in the low marsh and a shift towards the dissolved phase in the high marsh for both THg and MeHg. These results are consistent with a conceptual model for coastal wetlands where the less frequently inundated high marsh zone may be important in terms of MeHg production and enhanced subsurface mobilization, partially due to the subsurface mixing of saline estuarine water and freshwater draining in from the uplands area.

Microbial Nitrogen Cycling Associated with the Early Diagenesis of Organic Matter in Subseafloor Sediments

NASA Astrophysics Data System (ADS)

Zhao, R.

2015-12-01

The early diagenesis of organic matter is the major energy source of marine sedimentary biosphere and thus controls its population size; however, the vertical distribution of any functional groups along with the diagenesis of organic matter is remained unclear, especially for those microbes involved in nitrogen transformation which serve as a major control on the nitrogen flux between reservoirs. Here we investigated the vertical distributions of various functional groups in five sediment cores retrieved from Arctic Mid-Ocean Ridge (AMOR), with emphasis on the nitrifiers, denitrifiers and anaerobic ammonium oxidizing bacteria (anammox). We observed the clear geochemical zonation associated with organic matter diagenesis in the sediments based on the pore water profiles of oxygen, nitrate, ammonium, manganese and sulfate, with distinct geochemical transition zones at the boundaries of geochemical zones, including oxic-anoxic transition zone (OATZ) and nitrate-manganese reduction zone (NMTZ). Nitrate was produced in surface oxygenated sediments and nitrate consumption mainly took place at the NMTZ, splitted between re-oxidation of ammonium and manganese (II). Abundances of ammonia oxidizers, nitrite oxidizers, and denitrifiers, estimated through quantitative PCR targeting their respective functional genes, generally decrease with depth, but constantly elevated around the OATZ, NMTZ, and manganese-reduction zone as well. Anammox bacteria were only detected around the NMTZ where both nitrate/nitrite and ammonium are available. These depth profiles of functional groups were also confirmed by the community structure profiling by prokaryotic 16S rRNA gene tag pyrosequencing. Cell-specific rates of nitrification and denitrification, calculated from the bulk net reaction rates divided by functional group abundances, were similar to those values from oligotrophic sediments like North Pond and thus suggested that nitrifiers and denitirifiers populations were in maintenance

Concentration, composition and sources of PAHs in the coastal sediments of the exclusive economic zone (EEZ) of Qatar, Arabian Gulf.

PubMed

Soliman, Y S; Al Ansari, E M S; Wade, T L

2014-08-30

Surface sediments were collected from sixteen locations in order to assess levels and sources of polycyclic aromatic hydrocarbons (PAHs) in sediments of Qatar exclusive economic zone (EEZ). Samples were analyzed for 16 parent PAHs, 18 alkyl homologs and for dibenzothiophenes. Total PAHs concentration (∑PAHs) ranged from 2.6 ng g(-1) to 1025 ng g(-1). The highest PAHs concentrations were in sediments in and adjacent to harbors. Alkylated PAHs predominated most of the sampling locations reaching up to 80% in offshore locations. Parent PAHs and parent high molecular weight PAHs dominated location adjacent to industrial activities and urban areas. The origin of PAHs sources to the sediments was elucidated using ternary plot, indices, and molecular ratios of specific compounds such as (Ant/Phe+Ant), (Flt/Flt+Pyr). PAHs inputs to most coastal sites consisted of mixture of petroleum and combustion derived sources. However, inputs to the offshore sediments were mainly of petroleum origin. Copyright © 2014 Elsevier Ltd. All rights reserved.

Complex community of nitrite-dependent anaerobic methane oxidation bacteria in coastal sediments of the Mai Po wetland by PCR amplification of both 16S rRNA and pmoA genes.

PubMed

Chen, Jing; Zhou, Zhichao; Gu, Ji-Dong

2015-02-01

In the present work, both 16S rRNA and pmoA gene-based PCR primers were employed successfully to study the diversity and distribution of n-damo bacteria in the surface and lower layer sediments at the coastal Mai Po wetland. The occurrence of n-damo bacteria in both the surface and subsurface sediments with high diversity was confirmed in this study. Unlike the two other known n-damo communities from coastal areas, the pmoA gene-amplified sequences in the present work clustered not only with some freshwater subclusters but also within three newly erected marine subclusters mostly, indicating the unique niche specificity of n-damo bacteria in this wetland. Results suggested vegetation affected the distribution and community structures of n-damo bacteria in the sediments and n-damo could coexist with sulfate-reducing methanotrophs in the coastal ecosystem. Community structures of the Mai Po n-damo bacteria based on 16S rRNA gene were different from those of either the freshwater or the marine. In contrast, structures of the Mai Po n-damo communities based on pmoA gene grouped with the marine ones and were clearly distinguished from the freshwater ones. The abundance of n-damo bacteria at this wetland was quantified using 16S rRNA gene PCR primers to be 2.65-6.71 × 10(5) copies/g dry sediment. Ammonium and nitrite strongly affected the community structures and distribution of n-damo bacteria in the coastal Mai Po wetland sediments.

Flavins in Coastal Marine Sediments: New Perspectives on Diagenetic Electron Transfer

NASA Astrophysics Data System (ADS)

Monteverde, D.; Berelson, W.; Baronas, J. J.; Sanudo-Wilhelmy, S. A.

2016-02-01

Coastal marine sediments play a critical role in the global cycling of metals and nutrients, many of which undergo diagenetic alteration. Central to these transformations are redox reactions where electron-rich organic matter is oxidized via transfer to terminal electron acceptors (NO3-, MnOx, FeOx, SO42-). The flavins (flavin adenine dinucleotide [FAD], flavin mononucleotide [FMN], and riboflavin [B2]) are microbially synthesized organic coenzymes that perform both single and double electron transfer and are known to mediate reduction of insoluble metal oxides. Culture experiments have found high rates of flavin excretion in metal-reducing Shewanella and Geobacter species, however environmental measurements of these highly labile molecules have not been previously reported. Here we present porewater measurements of FAD, FMN, and B2 from San Pedro Basin. This California Borderland basin is silled, suboxic, 900 m deep, and experiences high sedimentation. Flavin concentrations ranged from pico- (FAD: 0- 60 pM; B2: 40 - 90 pM) to nanomolar (FMN: 0.4 - 1.2 nM). The concentration cascade of FMN>B2>FAD fits well within culture experiments. Interestingly, profiles of all three flavins show a near linear increase with depth from 0-30 cm and a relatively steady concentration from 30-45 cm, supporting likely in situ production. Additionally, the flavins showed a negative correlation with dissolved Fe (R2 = 0.7 for FMN, 0.8 for FAD, and 0.9 for B2), which decreased linearly with depth from 160µM to 65µM. We discuss hypothesized mechanisms controlling flavin concentrations based on a suite of sediment geochemical parameters (dissolved Fe, Mn, TCO2, δ13C, NH3, DOM, and SO42-) as well as implications for microbial redox syntrophy. These data provide a critical link between the extensive culture-based mechanistic understanding of flavin function and the sedimentary environment. Furthermore, these results demonstrate that flavins likely serve as a significant electron transfer

Alkane biodegradation genes from chronically polluted subantarctic coastal sediments and their shifts in response to oil exposure.

PubMed

Guibert, Lilian M; Loviso, Claudia L; Marcos, Magalí S; Commendatore, Marta G; Dionisi, Hebe M; Lozada, Mariana

2012-10-01

Although sediments are the natural hydrocarbon sink in the marine environment, the ecology of hydrocarbon-degrading bacteria in sediments is poorly understood, especially in cold regions. We studied the diversity of alkane-degrading bacterial populations and their response to oil exposure in sediments of a chronically polluted Subantarctic coastal environment, by analyzing alkane monooxygenase (alkB) gene libraries. Sequences from the sediment clone libraries were affiliated with genes described in Proteobacteria and Actinobacteria, with 67 % amino acid identity in average to sequences from isolated microorganisms. The majority of the sequences were most closely related to uncultured microorganisms from cold marine sediments or soils from high latitude regions, highlighting the role of temperature in the structuring of this bacterial guild. The distribution of alkB sequences among samples of different sites and years, and selection after experimental oil exposure allowed us to identify ecologically relevant alkB genes in Subantarctic sediments, which could be used as biomarkers for alkane biodegradation in this environment. 16 S rRNA amplicon pyrosequencing indicated the abundance of several genera for which no alkB genes have yet been described (Oleispira, Thalassospira) or that have not been previously associated with oil biodegradation (Spongiibacter-formerly Melitea-, Maribius, Robiginitomaculum, Bizionia and Gillisia). These genera constitute candidates for future work involving identification of hydrocarbon biodegradation pathway genes.

Occurrence and distribution of selected heavy metals in the surface sediments of South Brittany coastal waters: An assessment using pollution indicators

NASA Astrophysics Data System (ADS)

Ong, M. C.; Menier, D.; Noor Azhar, M. S.; Dupont, V.; Révillon, S.

2012-04-01

In order to avoid the pollution of heavy metals in South Brittany water, it is necessary to establish the data and understand the mechanisms influencing the distribution of heavy metals of the area. One of the aims of this work was to assess heavy metals contamination in Gulf of Morbihan and Quiberon Bay. Another aim was to use interpolation surfaces per metals to assess the contamination separately per metal. A total of 196 bottom sediment samples were collected from the coastal waters in order to determine the spatial concentration of Cr, Mn, Co, Cu, Zn, Cd and Pb by Inductively Coupled Plasma Mass Spectrometry (ICPMS) after acid digestion. The average heavy metal concentrations are ranked as follows: Mn>Zn>Cr>Pb>Cu>Cu>Cd. In the gulf, metal enrichments observed compared to the bay environment may due river run-off from three major river (Auray, Le Marle and Novalo rivers) which carried municipal waste and maritime activities along the coastal area within the gulf. Beside those factors, the natural factors such as the sheltered basin morphology itself, fine sediment and low hydrodynamic regime which favour the in situ accumulation of pollutants. The level of pollution levels attributed to heavy metals was evaluated using several pollution indicators in order to determine anthropogenically derived sediment contamination. Comparison to sediment quality guidelines (SQGs), enrichment factors (EFs), index of geoaccumulation (Igeo) and contamination factors (CF) based on reference element and background value to compensate for the influence of the natural variability in sediment mineralogy and to assess whether the concentration observed in surface sediment represent background and contaminated levels and visualize using ArcGIS software. These analyses validated that the bottom sediment only enriched in Pb and the other metals in most sample are not due to artificial contamination. Overall, geochemistry of the samples show the effect of both natural and anthropogenic

Thermaikos Gulf Coastal System, NW Aegean Sea: an overview of water/sediment fluxes in relation to air land ocean interactions and human activities

NASA Astrophysics Data System (ADS)

Poulos, S. E.; Chronis, G. Th; Collins, M. B.; Lykousis, V.

2000-04-01

This study presents an overview of the Holocene formation and evolution of the coastal system of Thermaikos Gulf (NW Aegean Sea). The system is divided into the terrestrial sub-system and the oceanic sub-system; the former represents 90%, while the latter includes only 10% of the total area. This particular coastal zone includes the second most important socio-economic area of Greece and in the southern Balkans, the Thessaloniki region; this is in terms of population concentration (>1 million people), industry, agriculture, aquaculture, trade and services. The geomorphology of the coastal zone is controlled by sediment inputs, nearshore water circulation, and the level of wave activity. The large quantities of sediments (with yields >500 tonnes/km 2 per year), delivered annually by the main rivers (Axios, Aliakmon, Pinios, and Gallikos) and other seasonal streams are responsible for the general progradation of the coastline and the formation of the Holocene sedimentary cover over the seabed of the Gulf. Changes to the coastline can be identified on macro- and meso-time scales; the former include the evolution of the deltaic plains (at >1 km 2/year), while the latter incorporates seasonal changes along sections of the coastline (e.g. sandy spits), mostly due to the anthropogenic activities. The overall water circulation pattern in Thermaikos Gulf is characterised by northerly water movement, from the central and eastern part of the Gulf; this is compensated by southerly movement along its western part. The prevailing climate (winds and pressure systems) appears to control the surface water circulation, while near-bed current measurements reveal a general moderate (<15 cm/s) southerly flow, i.e. offshore, towards the deep water Sporades Basin. Waves approaching from southerly directions play also a role in controlling the shoreline configuration. Various human activities within the coastal system place considerable pressure on the natural evolution of the coastal

Using Interactive eBooks To Educate Children About Sub-seafloor Science

NASA Astrophysics Data System (ADS)

Kurtz, K.

2016-02-01

Sub-seafloor scientific research has the power to spark the imaginations of elementary age children with its mysterious nature, cutting-edge research, and its connections to kid friendly science topics, such as volcanoes, the extinction of dinosaurs and the search for extraterrestrial life. These factors have been utilized to create two interactive eBooks for elementary students and teachers, integrating high quality science information, highly engaging and age-appropriate illustrations, and rhyming text. The first eBook introduces children to the research and discoveries of the JOIDES Resolution research vessel. The creators were able to build-on the knowledge gained in creating the first eBook to create a second eBook that focuses on the discoveries of microbial life in the sub-seafloor. The eBooks present information as traditional, linear, illustrated children's books, but the eBook format allows the book to be available online for free to anyone and allows teachers to project the book on a classroom screen so all students can easily see the illustrations. The iPad versions also provide an interactive, learner-led educational experience, where cognitively appropriate videos, photos and other forms of information can be accessed with the tap of a finger to answer reader questions and enrich their learning experience. These projects provide an example and model of the products that can result from high level and meaningful partnerships between scientists, educators, artists and writers.

National Coastal Condition Report IV Factsheet

EPA Pesticide Factsheets

Overall condition of the Nation’s coastal waters is fair. This rating is based on five indices of ecologicalcondition: water quality index, sediment quality index, benthic index, coastal habitat index, and fish tissue contaminants index.

Where the Wild Microbes Are: Education and Outreach on Sub-Seafloor Microbes

NASA Astrophysics Data System (ADS)

Cooper, S. K.; Kurtz, K.; Orcutt, B.; Strong, L.; Collins, J.; Feagan, A.

2014-12-01

Sub-seafloor microbiology has the power to spark the imaginations of children, students and the general public with its mysterious nature, cutting-edge research, and connections to the search for extraterrestrial life. These factors have been utilized to create a number of educational and outreach products to bring subsurface microbes to non-scientist audiences in creative and innovative ways. The Adopt a Microbe curriculum for middle school students provides hands-on activities and investigations for students to learn about microbes and the on-going research about them, and provides opportunities to connect with active expeditions. A new series of videos engages non-scientists with stories about research expeditions and the scientists themselves. A poster and associated activities explore the nature of science using a microbiologist and her research as examples. A new e-book for young children will engage them with age-appropriate text and illustrations. These projects are multidisciplinary, involve science and engineering practices, are available to all audiences and provide examples of high level and meaningful partnerships between scientists and educators and the kinds of products that can result. Subseafloor microbiology projects such as these, aimed at K-12 students and the general public, have the potential to entice the interest of the next generation of microbe scientists and increase general awareness of this important science.

Chromite oxidation by manganese oxides in subseafloor basalts and the presence of putative fossilized microorganisms.

PubMed

Ivarsson, Magnus; Broman, Curt; Holm, Nils G

2011-06-03

Chromite is a mineral with low solubility and is thus resistant to dissolution. The exception is when manganese oxides are available, since they are the only known naturally occurring oxidants for chromite. In the presence of Mn(IV) oxides, Cr(III) will oxidise to Cr(VI), which is more soluble than Cr(III), and thus easier to be removed. Here we report of chromite phenocrysts that are replaced by rhodochrosite (Mn(II) carbonate) in subseafloor basalts from the Koko Seamount, Pacific Ocean, that were drilled and collected during the Ocean Drilling Program (ODP) Leg 197. The mineral succession chromite-rhodochrosite-saponite in the phenocrysts is interpreted as the result of chromite oxidation by manganese oxides. Putative fossilized microorganisms are abundant in the rhodochrosite and we suggest that the oxidation of chromite has been mediated by microbial activity. It has previously been shown in soils and in laboratory experiments that chromium oxidation is indirectly mediated by microbial formation of manganese oxides. Here we suggest a similar process in subseafloor basalts.

Chromite oxidation by manganese oxides in subseafloor basalts and the presence of putative fossilized microorganisms

PubMed Central

2011-01-01

Chromite is a mineral with low solubility and is thus resistant to dissolution. The exception is when manganese oxides are available, since they are the only known naturally occurring oxidants for chromite. In the presence of Mn(IV) oxides, Cr(III) will oxidise to Cr(VI), which is more soluble than Cr(III), and thus easier to be removed. Here we report of chromite phenocrysts that are replaced by rhodochrosite (Mn(II) carbonate) in subseafloor basalts from the Koko Seamount, Pacific Ocean, that were drilled and collected during the Ocean Drilling Program (ODP) Leg 197. The mineral succession chromite-rhodochrosite-saponite in the phenocrysts is interpreted as the result of chromite oxidation by manganese oxides. Putative fossilized microorganisms are abundant in the rhodochrosite and we suggest that the oxidation of chromite has been mediated by microbial activity. It has previously been shown in soils and in laboratory experiments that chromium oxidation is indirectly mediated by microbial formation of manganese oxides. Here we suggest a similar process in subseafloor basalts. PMID:21639896

Petroleum hydrocarbons in a water-sediment system from Yellow River estuary and adjacent coastal area, China: Distribution pattern, risk assessment and sources.

PubMed

Wang, Min; Wang, Chuanyuan; Li, Yuanwei

2017-09-15

Aliphatic hydrocarbons (AHs), biomarker and polycyclic aromatic hydrocarbons (PAHs) concentrations of surface water and sediment samples collected from Yellow River Estuary and adjacent coastal area in China were measured to determine their spatial distributions, analyze their sources and evaluate the ecological risk of PAHs in the water-sediment system. The spatial distributions of n-alkane in sediments are mainly controlled by the mixing inputs of terrigenous and marine components. In comparison with AHs, the total concentrations of Σ16PAHs in surface sediments from a transect of the offshore area were noticeably higher than that of the riverine and estuary areas. Additionally, the AHs and total PAHs concentrations all indicated an overall pattern of a seaward decrease. The PAHs concentrations during the dry season (mainly in the form of dissolved phase) were higher than that of PAHs (mainly dissolved phase and particulate phase form) in the flooding season. In comparison with global concentration levels of PAHs, the level of PAHs in suspended particulate matter and sediments from the Yellow River Estuary was lower than those from other countries, while the concentration of PAHs in the dissolved phase were in the middle range. Petroleum contamination, mainly from oil exploration and discharge of pollutants from rivers, was the main source of n-alkanes. The PAHs in the river were mostly of petrogenic origin, while those in the estuarial and marine areas originated mainly from pyrogenic sources. The results of the toxicology assessment suggested that the PAHs in sediments from Yellow River Estuary and adjacent coastal area exhibited a low potential eco-toxicological contamination level. Copyright © 2017 Elsevier Ltd. All rights reserved.

A mid-Permian chert event: widespread deposition of biogenic siliceous sediments in coastal, island arc and oceanic basins

USGS Publications Warehouse

Murchey, B.L.; Jones, D.L.

1992-01-01

Radiolarian and conodont of Permian siliceous rocks from twenty-three areas in teh the circum-Pacific and Mediterranean regions reveal a widespread Permian Chert Event during the middle Leonardian to Wordian. Radiolarian- and (or) sponge spicule-rich siliceous sediments accumulated beneath high productivity zones in coastal, island arc and oceanic basins. Most of these deposits now crop out in fault-bounded accreted terranes. Biogenic siliceous sediments did not accumulate in terranes lying beneath infertile waters including the marine sequences in terranes of northern and central Alaska. The Permian Chert Event is coeval with major phosphorite deposition along the western margin of Pangea (Phosphoria Formation and related deposits). A well-known analogue for this event is middle Miocene deposition of biogenic siliceous sediments beneath high productivity zones in many parts of the Pacific and concurrent deposition of phosphatic as well as siliceous sediments in basins along the coast of California. Interrelated factors associated with both the Miocene and Permian depositional events include plate reorientations, small sea-level rises and cool polar waters. ?? 1992.

Porewater dynamics of silver, lead and copper in coastal sediments and implications for benthic metal fluxes

USGS Publications Warehouse

Kalnejais, Linda H.; Martin, W. R.; Bothner, Michael H.

2015-01-01

To determine the conditions that lead to a diffusive release of dissolved metals from coastal sediments, porewater profiles of Ag, Cu, and Pb have been collected over seven years at two contrasting coastal sites in Massachusetts, USA. The Hingham Bay (HB) site is a contaminated location in Boston Harbor, while the Massachusetts Bay (MB) site is 11 km offshore and less impacted. At both sites, the biogeochemical cycles include scavenging by Fe-oxyhydroxides and release of dissolved metals when Fe-oxyhydroxides are reduced. Important differences in the metal cycles at the two sites, however, result from different redox conditions. Porewater sulfide and seasonal variation in redox zone depth is observed at HB, but not at MB. In summer, as the conditions become more reducing at HB, trace metals are precipitated as sulfides and are no longer associated with Fe-oxyhydroxides. Sulfide precipitation close to the sediment–water interface limits the trace metal flux in summer and autumn at HB, while in winter, oxidation of the sulfide phases drives high benthic fluxes of Cu and Ag, as oxic conditions return. The annual diffusive flux of Cu at HB is found to be significant and contributes to the higher than expected water column Cu concentrations observed in Boston Harbor. At MB, due to the lower sulfide concentrations, the association of trace metals with Fe-oxyhydroxides occurs throughout the year, leading to more stable fluxes. A surface enrichment of solid phase trace metals was found at MB and is attributed to the persistent scavenging by Fe-oxyhydroxides. This process is important, particularly at sites that are less reducing, because it maintains elevated metal concentrations at the surface despite the effects of bioturbation and sediment accumulation, and because it may increase the persistence of metal contamination in surface sediments.

Numerical model on the material circulation for coastal sediment in Ago Bay, Japan

NASA Astrophysics Data System (ADS)

Anggara Kasih, G. A.; Chiba, Satoshi; Yamagata, Youichi; Shimizu, Yasuhiro; Haraguchi, Koichi

2009-04-01

In this paper, we study the sediment in Ago Bay from the aspects of the biogeochemical cycle and the mass transport by means of a numerical model. We developed the model by adopting the basic idea of Berg et al. (Berg, P., Rysgaard, S., Thamdrup, B., 2003. Dynamic modeling of early diagenesis and nutrient cycling: A case study in Artic marine sediment. Am. J. Sci. 303, 905-955.), Fossing et al. [Fossing, H., Berg, P., Thamdrup, B., Rysgaard, S., Sorensen, H.M., Nielsen, K.A., 2004. Model set-up for an oxygen and nutrient flux for Aarhus Bay (Denmark). National Environmental Research Institute (NERI) Technical Report No. 483. Ministry of the Environment, Denmark, 65 pp.] and Sayama [Sayama, M., 2000. Analytical technique for the nitrogen circulation in the boundary layer of the coastal sediment. Isao Koike edited, Japan Environmental Management Association for Industry, Tokyo, pp. 51-103. (in Japanese)]. In the model, the biogeochemical processes involve five primary reactions and sixteen secondary reactions. The primary reactions describe the degradation of organic matters, and the secondary reactions describe the miscellaneous reactions such as re-oxidation of reduced species formed as a product from primary reactions, and the crystallizing process of oxidized particles. The transports process includes molecular diffusion, advection, bioturbation and bioirrigation. The model performance is verified by comparing the model predicted data to the observed data. The comparison involves data of vertical distribution of material concentrations and the material fluxes at the sediment-water interface. The comparison shows that the model can reproduce the observed vertical profile and the observed material fluxes at the sediment-water interface. The material circulation result shows that about 42% of dissolved organic matter (DOM) is mineralized by sulfate reduction, around 41% by oxygen respiration, and the remaining is mineralized by denitrification, manganese and iron

Controlling factors of recent clastic coastal sediments (Viransehir, Mersin bay, S Turkey)

NASA Astrophysics Data System (ADS)

Gül, Murat; Özbek, Ahmet; Kurt, Mehmet Ali; Zorlu, Kemal

2009-04-01

The Plio-Quaternary conglomeratic sets within the marine environment of the Viranşehir coast (W Mersin, S Turkey) are responsible for the evolution of sandy and gravely beaches due to their control on various factors such as sea floor irregularity, wave energy, and organic activity. The conglomeratic sets close to the shoreline (50-150 cm) act as wave breakers, creating hard substratum and high energy, well-oxygenated environment for organisms like Patella sp., Phoronida worms and Brachidontes pharaonis (Fischer P. 1870). The boring activities of these organisms have disintegrated the sandy matrix of these sets. Finer-grained matrix sediments have been transported to the interset and open sea, while cobble-pebbles have been carried landwards and have created imbricated gravely beach deposits without matrix. Sandy beach is evolving where the conglomeratic sets away from the shoreline (5.0-10.0 m). In this example, sets form a bar; causing fivefold division as backshore, berm, surf zone, bar and offshore from land to sea. Poorly sorted, cobbles-pebbles cobbles and pebbles are found associated with the high-energy environments of bars, whilst well-sorted sands are observed in low energetic environments on shore. The sets and recent shell fragments are the main sources of coastal sediments in Viranşehir. However, the amount of shell fragments decrease towards the active river mouth. This is due to sediment and fresh water influx from the river causing deteriorated temperature, salinity and light penetration of the marine environment resulting in less organic diversity.

Functional biodiversity of marine soft-sediment polychaetes from two Mediterranean coastal areas in relation to environmental stress.

PubMed

Nasi, F; Nordström, M C; Bonsdorff, E; Auriemma, R; Cibic, T; Del Negro, P

2018-06-01

Biological Traits Analysis (BTA) was used to identify functional features of infaunal polychaete assemblages associated with contamination in two Italian coastal areas: the harbour of Trieste (Adriatic Sea) and the Mar Piccolo of Taranto (Ionian Sea). The analysis was performed on 103 taxa, collected at four stations in each area. The two areas differed in species composition. The low diversity and the presence of stress-tolerant species in more polluted sites were not reflected in functional diversity, due to species contributing little to community functions or being functionally redundant. Sand and clay fractions were significant drivers of trait category expressions, however other environmental parameters (depth, total organic carbon and nitrogen, and Hg in sediments) influenced traits composition. Motile was the prevalent trait in environments with coarse sediments, and tube-builder were related to fine-grained ones. Motile, endobenthic and burrower were essential traits for living in contaminated sediments. Epibenthic and sessile polychaetes dominated at stations subjected to high organic loads. BTA offers an integrative approach to detect functional adaptations to contaminated sediments and multiple anthropogenic stressors. Copyright © 2018 Elsevier Ltd. All rights reserved.

Coastal Modeling System: Mathematical Formulations and Numerical Methods

DTIC Science & Technology

2014-03-01

sediment transport , and morphology change. The CMS was designed and developed for coastal inlets and navigation applications, including channel...numerical methods of hydrodynamic, salinity and sediment transport , and morphology change model CMS-Flow. The CMS- Flow uses the Finite Volume...and the influence of coastal structures. The implicit hydrodynamic model is coupled to a nonequilibrium transport model of multiple-sized total

Polycyclic aromatic hydrocarbons (PAHs) and alkylated PAHs in the coastal seawater, surface sediment and oyster from Dalian, Northeast China.

PubMed

Hong, Wen-Jun; Jia, Hongliang; Li, Yi-Fan; Sun, Yeqing; Liu, Xianjie; Wang, Luo

2016-06-01

A total of 46 polycyclic aromatic hydrocarbons (PAHs, 21 parent and 25 alkylated) were determined in seawater, surface sediment and oyster from coastal area of Dalian, North China. The concentration of Σ46PAHs in seawater, sediment, and oyster were 136-621 ng/L, 172-4700 ng/g dry weight (dw) and 60.0-129 ng/g wet weight (ww) in winter, and 65.0-1130 ng/L, 71.1-1090 ng/g dw and 72.8-216 ng/g ww in summer, respectively. High PAH levels were found in industrial area both in winter and summer. Selected PAH levels in sediments were compared with Sediments Quality Guidelines (ERM-ERL, TEL-PEL indexes) for evaluation probable toxic effects on marine organism and the results indicate that surface sediment from all sampling sites have a low to medium ecotoxicological risk. Daily intake of PAHs via oyster as seafood by humans were estimated and the results indicated that oyster intake would not pose a health risk to humans even 30 days after a oil spill accident near by. Water-sediment exchange analysis showed that, both in winter and summer, the fluxes for most high molecular weight PAHs were from seawater to sediment, while for low molecular weight PAHs, an equilibrium was reached between seawater and sediment. Copyright © 2016 Elsevier Inc. All rights reserved.

Sub-seafloor Processes and the Composition of Diffuse Hydrothermal Fluids

NASA Astrophysics Data System (ADS)

Butterfield, D. A.; Lilley, M. D.; Huber, J. A.; Baross, J. A.

2002-12-01

High-temperature water/rock reactions create the primary hydrothermal fluids that are diluted with cool, "crustal seawater" to produce low-temperature, diffuse hydrothermal vent fluids. By knowing the composition of each of the components that combine to produce diffuse fluids, one can compare the composition of calculated mixtures with the composition of sampled fluids, and thereby infer what chemical constituents have been affected by processes other than simple conservative mixing. Although there is always uncertainty in the composition of fluids from the sub-seafloor, some processes are significant enough to alter diffuse fluid compositions from the expected conservative mixtures of hot,primary fluid and "crustal seawater." When hydrothermal vents with a wide range of temperature are sampled, processes occurring in different thermal and chemical environments potentially can be discerned. At Axial Volcano (AV) on the Juan de Fuca ridge, methane clearly is produced in warm sub-seafloor environments at temperatures of ~ 100° or less. Based on culturing and phylogenetic analysis from the same water samples at AV, hyperthermophilic methanogens are present in water samples taken from vents ranging in temperature from 15 to 78° C. Ratios of hydrogen sulfide to pseudo-conservative tracers (dissolved silica or heat) at AV decrease when primary fluids are highly diluted with oxygenated seawater. Phylogenetic signatures of microbes closely related to sulfide-oxidizers are present in these same fluids. Hydrogen sulfide oxidation represents the dominant source of energy for chemosynthesis at AV, as in most hydrothermal systems, but a relatively small proportion of the total hydrogen sulfide available is actually oxidized, except at the very lowest temperatures.

Subseafloor fluid mixing and fossilized microbial life in a Cretaceous 'Lost City'-type hydrothermal system at the Iberian Margin

NASA Astrophysics Data System (ADS)

Klein, F.; Humphris, S. E.; Guo, W.; Schubotz, F.; Schwarzenbach, E. M.; Orsi, W.

2015-12-01

Subseafloor mixing of reduced hydrothermal fluids with seawater is believed to provide the energy and substrates needed to support autotrophic microorganisms in the hydrated oceanic mantle (serpentinite). Despite the potentially significant implications for the distribution of microbial life on Earth and other water-bearing planetary bodies, our understanding of such environments remains elusive. In the present study we examined fossilized microbial communities and fluid mixing processes in the subseafloor of a Cretaceous 'Lost City'-type hydrothermal system at the passive Iberia Margin (ODP Leg 149, Hole 897D). Brucite and calcite co-precipitated from mixed fluids ca. 65m below the Cretaceous palaeo-seafloor at temperatures of 32±4°C within steep chemical gradients (fO2, pH, CH4, SO4, ΣCO2, etc) between weathered, carbonate-rich serpentinite breccia and serpentinite. Mixing of oxidized seawater and strongly reducing hydrothermal fluid at moderate temperatures created conditions capable of supporting microbial activity within the oceanic basement. Dense microbial colonies are fossilized in brucite-calcite veins that are strongly enriched in organic carbon but depleted in 13C. We detected a combination of bacterial diether lipid biomarkers, archaeol and archaeal tetraethers analogous to those found in brucite-carbonate chimneys at the active Lost City hydrothermal field. The exposure of mantle rocks to seawater during the breakup of Pangaea fueled chemolithoautotrophic microbial communities at the Iberia Margin during the Cretaceous, possibly before the onset of seafloor spreading in the Atlantic. 'Lost City'-type serpentinization systems have been discovered at mid-ocean ridges, in forearc settings of subduction zones and at continental margins. It appears that, wherever they occur, they can support microbial life, even in deep subseafloor environments as demonstrated in the present study. Because equivalent systems have likely existed throughout most of Earth

Subseafloor fluid mixing and fossilized microbial life in a Cretaceous 'Lost City'-type hydrothermal system at the Iberian Margin

NASA Astrophysics Data System (ADS)

Klein, F.; Humphris, S. E.; Guo, W.; Schubotz, F.; Schwarzenbach, E. M.; Orsi, W.

2014-12-01

Subseafloor mixing of reduced hydrothermal fluids with seawater is believed to provide the energy and substrates needed to support autotrophic microorganisms in the hydrated oceanic mantle (serpentinite). Despite the potentially significant implications for the distribution of microbial life on Earth and other water-bearing planetary bodies, our understanding of such environments remains elusive. In the present study we examined fossilized microbial communities and fluid mixing processes in the subseafloor of a Cretaceous 'Lost City'-type hydrothermal system at the passive Iberia Margin (ODP Leg 149, Hole 897D). Brucite and calcite co-precipitated from mixed fluids ca. 65m below the Cretaceous palaeo-seafloor at temperatures of 32±4°C within steep chemical gradients (fO2, pH, CH4, SO4, ΣCO2, etc) between weathered, carbonate-rich serpentinite breccia and serpentinite. Mixing of oxidized seawater and strongly reducing hydrothermal fluid at moderate temperatures created conditions capable of supporting microbial activity within the oceanic basement. Dense microbial colonies are fossilized in brucite-calcite veins that are strongly enriched in organic carbon but depleted in 13C. We detected a combination of bacterial diether lipid biomarkers, archaeol and archaeal tetraethers analogous to those found in brucite-carbonate chimneys at the active Lost City hydrothermal field. The exposure of mantle rocks to seawater during the breakup of Pangaea fueled chemolithoautotrophic microbial communities at the Iberia Margin during the Cretaceous, possibly before the onset of seafloor spreading in the Atlantic. 'Lost City'-type serpentinization systems have been discovered at mid-ocean ridges, in forearc settings of subduction zones and at continental margins. It appears that, wherever they occur, they can support microbial life, even in deep subseafloor environments as demonstrated in the present study. Because equivalent systems have likely existed throughout most of Earth

Vertical and horizontal distribution of radionuclides ({sup 232}Th, {sup 238}U and {sup 40}K) in sediment from Manjung coastal water area Perak, Malaysia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abdullah, Anisa, E-mail: coppering@ymail.com; Hamzah, Zaini; Wood, Ab. Khalik

Distribution of radionuclides from anthropogenic activities has been widely studied in marine coastal area. Due to rapid population growth and socio-economic development in Manjung area such as coal fired power plant, iron foundries, port development, waste discharged from factories and agriculture runoff may contribute to increase in pollution rate. The radioactive materials from anthropogenic activities could deteriorate the quality of the marine ecosystem and thus lead to possible radiological health risk to the population. Radionuclides ({sup 232}Th, {sup 238}U and {sup 40}K) content in surface and profile sediment from Manjung coastal area was determined in this study. Radionuclides in sedimentmore » from seven locations were collected using sediment core sampling and measurements were carried out using Energy Dispersive X-ray Fluorescence (EDXRF) spectroscopy. The results show that the concentration of radionuclides in surface sediment and distribution trend of depth vertical profile sediment generally varies depending on locations. Enrichment factors (EF), geo-accumulation index (I{sub geo}) and pollution index (PI) were applied to determine level of pollution of this study area. The radiological risks related to human exposure were evaluated based on external hazard index (H{sub ex})« less

Methane flux from coastal salt marshes

NASA Technical Reports Server (NTRS)

Bartlett, K. B.; Harriss, R. C.; Sebacher, D. I.

1985-01-01

It is thought that biological methanogenesis in natural and agricultural wetlands and enteric fermentation in animals are the dominant sources of global tropospheric methane. It is pointed out that the anaerobic soils and sediments, where methanogenesis occurs, predominate in coastal marine wetlands. Coastal marine wetlands are generally believed to be approximately equal in area to freshwater wetlands. For this reason, coastal marine wetlands may be a globally significant source of atmospheric methane. The present investigation is concerned with the results of a study of direct measurements of methane fluxes to the atmosphere from salt marsh soils and of indirect determinations of fluxes from tidal creek waters. In addition, measurements of methane distributions in coastal marine wetland sediments and water are presented. The results of the investigation suggest that marine wetlands provide only a minor contribution to atmospheric methane on a global scale.

Maps showing estimated sediment yield from coastal landslides and active slope distribution along the Big Sur coast, Monterey and San Luis Obispo Counties, California

USGS Publications Warehouse

Hapke, Cheryl J.; Green, Krystal R.; Dallas, Kate

2004-01-01

The 1982-83 and 1997-98 El Ni?os brought very high precipitation to California?s central coast; this precipitation resulted in raised groundwater levels, coastal flooding, and destabilized slopes throughout the region. Large landslides in the coastal mountains of Big Sur in Monterey and San Luis Obispo Counties blocked sections of California State Route 1, closing the road for months at a time. Large landslides such as these occur frequently in the winter months along the Big Sur coast due to the steep topography and weak bedrock. A large landslide in 1983 resulted in the closure of Highway 1 for over a year to repair the road and stabilize the slope. Resulting work from the 1983 landslide cost over $7 million and generated 30 million cubic yards of debris from landslide removal and excavations to re-establish the highway along the Big Sur coast. Before establishment of the Monterey Bay National Marine Sanctuary (MBNMS) in 1992, typical road opening measures involved disposal of some landslide material and excess material generated from slope stabilization onto the seaward side of the highway. It is likely that some or most of this disposed material, either directly or indirectly through subsequent erosion, was eventually transported downslope into the ocean. In addition to the landslides that initiate above the road, natural slope failures sometimes occur on the steep slopes below the road and thus deliver material to the base of the coastal mountains where it is eroded and dispersed by waves and nearshore currents. Any coastal-slope landslide, generated through natural or anthropogenic processes, can result in sediment entering the nearshore zone. The waters offshore of the Big Sur coast are part of the MBNMS. Since it was established in 1992, landslide-disposal practices came under question for two reasons. The U.S. Code of Federal Regulations, Title 15, Section 922.132 prohibits discharging or depositing, from beyond the boundary of the Sanctuary, any material

Coastal lake sediments reveal 5500 years of tsunami history in south central Chile

NASA Astrophysics Data System (ADS)

Kempf, Philipp; Moernaut, Jasper; Van Daele, Maarten; Vandoorne, Willem; Pino, Mario; Urrutia, Roberto; De Batist, Marc

2017-04-01

We present an exceptionally long and continuous coastal lacustrine record of ∼5500 years from Lake Huelde on the west coast of Chiloé Island in south central Chile. The study area is located within the rupture zone of the giant 1960 CE Great Chilean Earthquake (MW 9.5). The subsequent earthquake-induced tsunami inundated Lake Huelde and deposited mud rip-up clasts, massive sand and a mud cap in the lake. Long sediment cores from 8 core sites within Lake Huelde reveal 16 additional sandy layers in the 5500 year long record. The sandy layers share sedimentological similarities with the deposit of the 1960 CE tsunami and other coastal lake tsunami deposits elsewhere. On the basis of general and site-specific criteria we interpret the sandy layers as tsunami deposits. Age-control is provided by four different methods, 1) 210Pb-dating, 2) the identification of the 137Cs-peak, 3) an infrared stimulated luminescence (IRSL) date and 4) 22 radiocarbon dates. The ages of each tsunami deposit are modelled using the Bayesian statistic tools of OxCal and Bacon. The record from Lake Huelde matches the 8 regionally known tsunami deposits from documented history and geological evidence from the last ∼2000 years without over- or underrepresentation. We extend the existing tsunami history by 9 tsunami deposits. We discuss the advantages and disadvantages of various sedimentary environments for tsunami deposition and preservation, e.g. we find that Lake Huelde is 2-3 times less sensitive to relative sea-level change in comparison to coastal marshes in the same region.

Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Espínola, Fernando; Dionisi, Hebe M.; Borglin, Sharon

In this work, we analyzed the community structure and metabolic potential of sediment microbial communities in high-latitude coastal environments subjected to low to moderate levels of chronic pollution. Subtidal sediments from four low-energy inlets located in polar and subpolar regions from both Hemispheres were analyzed using large-scale 16S rRNA gene and metagenomic sequencing. Communities showed high diversity (Shannon’s index 6.8 to 10.2), with distinct phylogenetic structures (<40% shared taxa at the Phylum level among regions) but similar metabolic potential in terms of sequences assigned to KOs. Environmental factors (mainly salinity, temperature, and in less extent organic pollution) were drivers ofmore » both phylogenetic and functional traits. Bacterial taxa correlating with hydrocarbon pollution included families of anaerobic or facultative anaerobic lifestyle, such as Desulfuromonadaceae, Geobacteraceae, and Rhodocyclaceae. In accordance, biomarker genes for anaerobic hydrocarbon degradation (bamA, ebdA, bcrA, and bssA) were prevalent, only outnumbered by alkB, and their sequences were taxonomically binned to the same bacterial groups. BssA-assigned metagenomic sequences showed an extremely wide diversity distributed all along the phylogeny known for this gene, including bssA sensu stricto, nmsA, assA, and other clusters from poorly or not yet described variants. This work increases our understanding of microbial community patterns in cold coastal sediments, and highlights the relevance of anaerobic hydrocarbon degradation processes in subtidal environments.« less

210Pb sediment dating in coastal transition zones: tropical saltmarshes.

NASA Astrophysics Data System (ADS)

Ruiz-Fernandez, A. C.; Sanchez-Cabeza, J. A.; Carnero-Bravo, V.; Perez-Bernal, L. H.

2016-12-01

Sea level rise (SLR) is one of the climate change effects expected to have the largest impact on coastal environments. SLR rates are not uniform around the planet and, therefore, local and regional data and trends are needed for proper adaptation plans. As long term monitoring stations of SLR are very scarce in most of the world, SLR trends obtained from 210Pb-dated sediment cores from tropical saltmarshes have become a practical alternative to obtain SLR trends within the past century, under the assumption that these ecosystems accrete at a similar rate to SLR. However, tropical saltmarshes are challenging environments for 210Pb dating: they are regularly dry, intermittently covered by seawater only during the highest tides, and sedimentary records often reflect the transition between terrestrial and marine environments (e.g. changes in grain size distribution, organic matter content and elemental composition) with all these factors contributing for atypical 210Pb depth profiles. In addition, 137Cs, the chronostratigraphic marker most commonly used to corroborate 210Pb dating, fails to be preserved in the sedimentary record in tropical areas, owing to its solubility in marine waters, if at all detectable. The present study describes the challenges and proposed solutions for 210Pb dating saltmarsh sediment cores from two saltmarsh areas (southern Gulf of California and Yucatan Peninsula) including the use of plutonium isotopes for corroboration purposes. Acknowledgements: projects CONACYT CB2010/153492 and PDCPN201301/214349; UNAM PAPIIT-IN203313 and the PRODEP network "Aquatic contamination: levels and effects" (year 3).

Baseline evaluation of sediment contamination in the shallow coastal areas of Saudi Arabian Red Sea.

PubMed

Ruiz-Compean, Pedro; Ellis, Joanne; Cúrdia, João; Payumo, Richard; Langner, Ute; Jones, Burton; Carvalho, Susana

2017-10-15

Despite the growing recognition of the importance of water and sediment quality there is still limited information on contamination levels in many regions globally including the Red Sea. This study provides a comprehensive assessment of three classes of contaminants (Polycyclic Aromatic Hydrocarbons - PAH; metals; plastics) in coastal sediments along the Saudi Arabian Red Sea mainly collected using grabs. Background concentrations are provided for metals in the region. Concentrations of metals and PAH were generally low in comparison to international guidelines. A clear relationship between the concentration of metals and anthropogenic sources was not always apparent and dust and vegetation may be relevant players in the region. Microplastic items (mainly polyethylene) were abundant (reaching up to 1gm -2 and 160piecesm -2 ) and in general associated with areas of high human activity. This study provides critical information for future monitoring and the development of national policies within the Red Sea region. Copyright © 2017 Elsevier Ltd. All rights reserved.

Coastal Modeling System: Dredging Module

DTIC Science & Technology

2016-06-01

nonuniform sediments, spatially variable placement thicknesses or depths, and a user-friendly interface within the SMS. ERDC/CHL CHETN-I-90 June...and W. Wu. 2011. Nonuniform sediment transport modeling and Grays Harbor, WA. In Proceedings of the Coastal Sediments’11. Jacksonville, FL. Stark, J

Concentrations of organic contaminants in mollusks and sediments at NOAA National Status and Trend sites in the coastal and estuarine United States.

PubMed

O'Connor, T P

1991-01-01

Mean concentrations of PAHs, PCBs, and DDT in mollusks and sediments at sites in the National Status and Trends Program (NST) are distributed in log-normal fashion. The dry weight-based chlorinated organic concentrations in mollusks generally exceed those in nearby sediments by an order of magnitude. PAHs are found at similar concentrations in sediments and mollusks. Highest concentrations of PCBs and DDT in mollusks are in the ranges of 1000 to 4000 ng/g (dry) and 400 to 1000 ng/g (dry), respectively. The highest PAH concentrations in sediments are in the 10,000 to 50,000 ng/g (dry) range. While higher concentrations of contaminants can be found by sampling localized hot spots, the NST data represent the distribution of concentrations over general areas of the coastal United States.

Assessment of copper, cadmium and zinc remobilization in Mediterranean marine coastal sediments

NASA Astrophysics Data System (ADS)

Sakellari, Aikaterini; Plavšić, Marta; Karavoltsos, Sotiris; Dassenakis, Manos; Scoullos, Michael

2011-01-01

The remobilization of copper, cadmium and zinc in sediments of three selected coastal microenvironments of the Aegean Sea (Eastern Mediterranean) is assessed. Various analytical methods and techniques were employed providing concentrations, profiles and forms of metals and organic matter in sediments and pore waters. At Loutropyrgos, a non-industrial site located, however, within an intensively industrialized enclosed gulf, an intense resupply of zinc in pore water from sediment was recorded, correlating with the highest value of weakly bound fraction of zinc determined at this area. The comparatively high zinc concentrations measured in the pore waters (394 nM), exceed considerably those in the overlying seawater (12.5 nM determined by DGT; 13.5 nM total), resulting in the formation of a strong concentration gradient at the sediment-water interface. Potential zinc flux at the sediment-water interface at Loutropyrgos (based on 0.4 mm DGT profile) was calculated equal to 0.8 mmol.m -2.d -1. The half lives of trace metals at Loutropyrgos site, based on the aforementioned DGT profiles, amount to 0.1 y (Zn), 2.8 y (Cd), 4.5 y (Cu), 2.2 y (Mn) and 0.4 y (Fe) pointing out to the reactivity of these metals at the sediment-water interface. The concentration of dissolved organic carbon (DOC) in pore waters of the three selected sites (2.7-5.2 mg/L) was up to four times higher compared to that of the corresponding overlying seawater. Similarly, the concentrations of carbohydrates in pore waters (0.20-0.91 mg/L monosaccharides; 0.71-1.6 mg/L polysaccharides) are an order of magnitude higher than those of seawater, forming a concentration gradient at the sediment-water interface. Total carbohydrates contribute between 34 and 48% of the organic carbon of the pore waters, being significantly higher than those of seawater from the corresponding areas, which were in the range of 15-21%. The complexing capacity as for copper ions (CCu) determined in pore water ranges widely, from 0

Response of Late Cretaceous migrating deltaic facies systems to sea level, tectonics, and sediment supply changes, New Jersey Coastal Plain, U.S.A.

USGS Publications Warehouse

Kulpecz, A.A.; Miller, K.G.; Sugarman, P.J.; Browning, J.V.

2008-01-01

Paleogeographic, isopach, and deltaic lithofacies mapping of thirteen depositional sequences establish a 35 myr high resolution (> 1 Myr) record of Late Cretaceous wave- and tide-influenced deltaic sedimentation. We integrate sequences defined on the basis of lithologic, biostratigraphic, and Sr-isotope stratigraphy from cores with geophysical log data from 28 wells to further develop and extend methods and calibrations of well-log recognition of sequences and facies variations. This study reveals the northeastward migration of depocenters from the Cenomanian (ca. 98 Ma) through the earliest Danian (ca. 64 Ma) and documents five primary phases of paleodeltaic evolution in response to long-term eustatic changes, variations in sediment supply, the location of two long-lived fluvial axes, and thermoflexural basement subsidence: (1) Cenomanian-early Turonian deltaic facies exhibit marine and nonmarine facies and are concentrated in the central coastal plain; (2) high sediment rates, low sea level, and high accommodation rates in the northern coastal plain resulted in thick, marginal to nonmarine mixed-influenced deltaic facies during the Turonign-Coniacian; (3) comparatively low sediment rates and high long-term sea level in the Santonian resulted in a sediment-starved margin with low deltaic influence; (4) well-developed Campanian deltaic sequences expand to the north and exhibit wave reworking and longshore transport of sands, and (5) low sedimentation rates and high long-term sea level during the Maastrichtian resulted in the deposition of a sediment-starved glauconitic shelf. Our study illustrates the widely known variability of mixed-influence deltaic systems, but also documents the relative stability of deltaic facies systems on the 106-107 yr scale, with long periods of cyclically repeating systems tracts controlled by eustasy. Results from the Late Cretaceous further show that although eustasy provides the template for sequences globally, regional tectonics

Evidence for the Existence of Autotrophic Nitrate-Reducing Fe(II)-Oxidizing Bacteria in Marine Coastal Sediment

PubMed Central

Laufer, Katja; Røy, Hans; Jørgensen, Bo Barker

2016-01-01

ABSTRACT Nitrate-reducing Fe(II)-oxidizing microorganisms were described for the first time ca. 20 years ago. Most pure cultures of nitrate-reducing Fe(II) oxidizers can oxidize Fe(II) only under mixotrophic conditions, i.e., when an organic cosubstrate is provided. A small number of nitrate-reducing Fe(II)-oxidizing cultures have been proposed to grow autotrophically, but unambiguous evidence for autotrophy has not always been provided. Thus, it is still unclear whether or to what extent Fe(II) oxidation coupled to nitrate reduction is an enzymatically catalyzed and energy-yielding autotrophic process or whether Fe(II) is abiotically oxidized by nitrite from heterotrophic nitrate reduction. The aim of the present study was to find evidence for the existence of autotrophic nitrate-reducing Fe(II) oxidizers in coastal marine sediments. Microcosm incubations showed that with increasing incubation times, the stoichiometric ratio of reduced nitrate/oxidized Fe(II) [NO3−reduced/Fe(II)oxidized] decreased, indicating a decreasing contribution of heterotrophic denitrification and/or an increasing contribution of autotrophic nitrate-reducing Fe(II) oxidation over time. After incubations of sediment slurries for >10 weeks, nitrate-reducing activity ceased, although nitrate was still present. This suggests that heterotrophic nitrate reduction had ceased due to the depletion of readily available organic carbon. However, after the addition of Fe(II) to these batch incubation mixtures, the nitrate-reducing activity resumed, and Fe(II) was oxidized, indicating the activity of autotrophic nitrate-reducing Fe(II) oxidizers. The concurrent reduction of 14C-labeled bicarbonate concentrations unambiguously proved that autotrophic C fixation occurred during Fe(II) oxidation and nitrate reduction. Our results clearly demonstrated that autotrophic nitrate-reducing Fe(II)-oxidizing bacteria were present in the investigated coastal marine sediments. IMPORTANCE Twenty years after the

An operation manual for a time-series, storm-activated suspended sediment sampler deployed in the coastal ocean: function, maintenance, and testing procedures

USGS Publications Warehouse

Rendigs, Richard R.; Bothner, Michael H.

2004-01-01

This manual describes the operation and testing procedures for two models of a multi-port suspended sediment sampler that are moored in the coastal ocean and that collect samples on a programmable time schedule that can be interrupted to collect during a storm. The ability to sense and collect samples before, during, and after the height of a storm is a unique feature of these instruments because it provides samples during conditions when it is difficult or impossible to sample from a surface ship. The sensors used to trigger storm sampling are a transmissometer or a pressure sensor. The purpose of such samples is to assess composition and concentration of sediment resuspended from the seafloor during storms and subsequently transported within the coastal system. Both light transmission and the standard deviation of pressure from surface waves correlate with the passage of major storms. The instruments successfully identified the onset of storms and collected samples before, during, and after the storm maximum as programmed. The accuracy of determining suspended matter concentrations collected by the sediment sampler has not been fully evaluated. Preliminary laboratory tests using a suspension of muddy sediment collected in a near-bottom sediment trap yielded excellent results. However in laboratory tests with different sediment types, the suspended matter concentrations determined with these samplers became less accurate with increasing average grain size. Future calibration work is necessary and should be conducted in a facility that ideally has a water depth of at least 30 feet to prevent cavitation of the pump that draws sea water through the filters. The test facility should also have the capability for adding suspended matter of known composition and concentration to a fixed volume of seawater that is well mixed.

Monitoring of suspended sediment variation using Landsat and MODIS in the Saemangeum coastal area of Korea.

PubMed

Min, Jee-Eun; Ryu, Joo-Hyung; Lee, Seok; Son, Seunghyun

2012-02-01

Suspended sediment concentration (SS) is an important indicator of marine environmental changes due to natural causes such as tides, tidal currents, and river discharges, as well as human activities such as construction in coastal regions. In the Saemangeum area on the west coast of Korea, construction of a huge tidal dyke for land reclamation has strongly influenced the coastal environment. This study used remotely sensed data to analyze the SS changes in coastal waters caused by the dyke construction. Landsat and MODIS satellite images were used for the spatial analysis of finer patterns and for the detailed temporal analysis, respectively. Forty Landsat scenes and 105 monthly composite MODIS images observed during 1985-2010 were employed, and four field campaigns (from 2005 to 2006) were performed to verify the image-derived SS. The results of the satellite data analyses showed that the seawater was clear before the dyke construction, with SS values lower than 20 g/m(3). These values increased continuously as the dyke construction progressed. The maximum SS values appeared just before completion of the fourth dyke. Values decreased to below 5 g/m(3) after dyke construction. These changes indicated tidal current modification. Some eddies and plumes were observed in the images generated from Landsat data. Landsat and MODIS can reveal that coastal water turbidity was greatly reduced after completion of the construction. Copyright © 2011 Elsevier Ltd. All rights reserved.

Sediment-associated aliphatic and aromatic hydrocarbons in coastal British Columbia, Canada: concentrations, composition, and associated risks to protected sea otters.

PubMed

Harris, Kate A; Yunker, Mark B; Dangerfield, Neil; Ross, Peter S

2011-10-01

Sediment-associated hydrocarbons can pose a risk to wildlife that rely on benthic marine food webs. We measured hydrocarbons in sediments from the habitat of protected sea otters in coastal British Columbia, Canada. Alkane concentrations were dominated by higher odd-chain n-alkanes at all sites, indicating terrestrial plant inputs. While remote sites were dominated by petrogenic polycyclic aromatic hydrocarbons (PAHs), small harbour sites within sea otter habitat and sites from an urban reference area reflected weathered petroleum and biomass and fossil fuel combustion. The partitioning of hydrocarbons between sediments and adjacent food webs provides an important exposure route for sea otters, as they consume ∼25% of their body weight per day in benthic invertebrates. Thus, exceedences of PAH sediment quality guidelines designed to protect aquatic biota at 20% of the sites in sea otter habitat suggest that sea otters are vulnerable to hydrocarbon contamination even in the absence of catastrophic oil spills. Copyright © 2011 Elsevier Ltd. All rights reserved.

Distribution and metal contamination in the coastal sediments of Dammam Al-Jubail area, Arabian Gulf, Saudi Arabia.

PubMed

El-Sorogy, Abdelbaset; Al-Kahtany, Khaled; Youssef, Mohamed; Al-Kahtany, Fahd; Al-Malky, Mazen

2018-03-01

Present work aims to document the distribution and metal contamination in the coastal sediments of the Dammam Al-Jubail area, Saudi Arabian Gulf. Twenty-six samples were collected for Al, V, Cr, Mn, Cu, Zn, Cd, Pb, Hg, Sr, As, Fe, Co and Ni analysis. Results of enrichment factor indicated that Sr, Cd, Cu, Hg, V, As, Ni, Cr and Zn gave enrichment factors higher than 2 (98.87, 40.28, 33.20, 27.87, 26.11, 14.10, 6.15, 3.72 and 2.62 respectively) implying anthropogenic sources, while Pb, Mn and Al have very low background level (1.37, 0.71, 0.124 respectively), probably originated from natural sources. Average concentrations of Sr, V, Hg, Cd and As were mostly higher than those from the background shale and the earth crust, the Caspian Sea, the Mediterranean Sea, the sediment quality guidelines, the Red Sea, the Gulf of Aqaba and the Gulf of Oman. The higher levels of the studied metals are mostly related samples with high Al and TOM content, as well as the visible anthropogenic pollutants along the studied coastline. The most recorded anthropogenic pollutants were sewage effluent, landfilling due to coastal infrastructure development, oil spills, petrochemical industries and desalination plants in Al-Jubail industrial city. Copyright © 2018 Elsevier Ltd. All rights reserved.

Pathways for arsenic from sediments to groundwater to streams: Biogeochemical processes in the Inner Coastal Plain, New Jersey, USA

USGS Publications Warehouse

Barringer, Julia L.; Mumford, Adam; Young, Lily Y.; Reilly, Pamela A.; Bonin, Jennifer L.; Rosman, Robert

2010-01-01

The Cretaceous and Tertiary sediments that underlie the Inner Coastal Plain of New Jersey contain the arsenic-rich mineral glauconite. Streambed sediments in two Inner Coastal Plain streams (Crosswicks and Raccoon Creeks) that traverse these glauconitic deposits are enriched in arsenic (15–25 mg/kg), and groundwater discharging to the streams contains elevated levels of arsenic (>80 μg/L at a site on Crosswicks Creek) with arsenite generally the dominant species. Low dissolved oxygen, low or undetectable levels of nitrate and sulfate, detectable sulfide concentrations, and high concentrations of iron and dissolved organic carbon (DOC) in the groundwater indicate that reducing environments are present beneath the streambeds and that microbial activity, fueled by the DOC, is involved in releasing arsenic and iron from the geologic materials. In groundwater with the highest arsenic concentrations at Crosswicks Creek, arsenic respiratory reductase gene (arrA) indicated the presence of arsenic-reducing microbes. From extracted DNA, 16s rRNA gene sequences indicate the microbial community may include arsenic-reducing bacteria that have not yet been described. Once in the stream, iron is oxidized and precipitates as hydroxide coatings on the sediments. Arsenite also is oxidized and co-precipitates with or is sorbed to the iron hydroxides. Consequently, dissolved arsenic concentrations are lower in streamwater than in the groundwater, but the arsenic contributed by groundwater becomes part of the arsenic load in the stream when sediments are suspended during high flow. A strong positive relation between concentrations of arsenic and DOC in the groundwater samples indicates that any process—natural or anthropogenic—that increases the organic carbon concentration in the groundwater could stimulate microbial activity and thus increase the amount of arsenic that is released from the geologic materials.

Coastal applications of the ERTS-1 satellite imagery

NASA Technical Reports Server (NTRS)

Magoon, O. T. (Principal Investigator)

1972-01-01

There are no author-identified significant results in this report. Samples are given of the possible applications of ERTS-1 imagery to coastal and nearshore studies. Briefly discussed are: (1) obtaining regional views of extended coastal areas; (2) distribution of sediments; (3) coastal configurations and changes; (4) barrier islands; (5) underwater penetration, and (6) coastal waves.

Data on heavy metal and magnetic relationships in coastal sediments from South East Coast of Tamilnadu, India.

PubMed

Ravisankar, R; Harikrishnan, N; Chandrasekaran, A; Gandhi, M Suresh; Alagarsamy, R

2018-02-01

In this data, the heavy metal concentration and magnetic susceptibility in coastal sediment samples collected from Periyakalapet to Parangaipettai of East Coast of Tamilnadu using Energy Dispersive X-ray Fluorescence (EDXRF) technique and dual frequency susceptibility meter. We aimed to (i) determine the heavy metal concentration in the sediments from Periyakalapet to Parangaipettai of East Coast of Tamilnadu (ii) assess the magnetic mineral property of sediments (iii) study the correlation between heavy metal and magnetic susceptibility. The determined heavy metal concentration found in the order of Mn> Ba > V > Cr > Zn > La > Ni >Pb> Co > As > Cd > Cu > Al > Fe >Ca> Ti > K > Mg. The magnetic susceptibility (χ lf ) measurements show that they vary from 5.92×10 -8  m 3  kg -1 to 29.06×10 -8  m 3  kg -1 with an average of 20.39×10 -8  m 3  kg -1 . Analysed data confirmed that magnetic susceptibility has the potential tool to indicate the heavy metal pollution sources.

Archaeology of Archaea: geomicrobiological record of Pleistocene thermal events concealed in a deep-sea subseafloor environment.

PubMed

Inagaki, F; Takai, K; Komatsu, T; Kanamatsu, T; Fujioka, K; Horikoshi, K

2001-12-01

A record of the history of the Earth is hidden in the Earth's crust, like the annual rings of an old tree. From very limited records retrieved from deep underground, one can infer the geographical, geological, and biological events that occurred throughout Earth's history. Here we report the discovery of vertically shifted community structures of Archaea in a typical oceanic subseafloor core sample (1410 cm long) recovered from the West Philippine Basin at a depth of 5719 m. Beneath a surface community of ubiquitous deep-sea archaea (marine crenarchaeotic group I; MGI), an unusual archaeal community consisting of extremophilic archaea, such as extreme halophiles and hyperthermophiles, was present. These organisms could not be cultivated, and may be microbial relicts more than 2 million years old. Our discovery of archaeal rDNA in this core sample, probably associated with the past terrestrial volcanic and submarine hydrothermal activities surrounding the West Philippine Basin, serves as potential geomicrobiological evidence reflecting novel records of geologic thermal events in the Pleistocene period concealed in the deep-sea subseafloor.

Characteristics, distribution and sources of polychlorinated biphenyls (PCBs) in coastal sediments from the heavily industrialized area of Asalouyeh, Iran.

PubMed

Arfaeinia, Hossein; Asadgol, Zahra; Ahmadi, Ehsan; Seifi, Morteza; Moradi, Masoud; Dobaradaran, Sina

2017-12-01

In this research, the levels of polychlorinated biphenyls (PCBs) were investigated in the marine sediments of Asaluyeh harbor, in the Persian Gulf. The samples were taken from industrial, semi-industrial and urban regions. The mean concentration levels of total (Σ) 18 detected PCBs were 514.32, 144.67 and 31.6 pg/g dw for the industrial, semi-industrial and urban sampling stations, respectively. Based on a multivariate statistical analysis, it was found that high contamination levels of PCBs in sediments collected along the Persian Gulf were associated with releases from local industries. Total organic carbon (TOC) content was significantly and positively correlated with the concentrations of PCB congeners. World Health Organization toxic equivalents (TEQs) for PCBs ranged from 0.04 to 2.66 pg TEQ/g dry weight (dw) in the coastal sediments. The TEQ values in this study were higher than many reported worldwide in the literature for sediments. This suggests that there are high levels of contamination in the area due to industrial and other human activities.

Nitrogen removal through N cycling from sediments in a constructed coastal marsh as assessed by 15N-isotope dilution.

PubMed

Ro, Hee-Myong; Kim, Pan-Gun; Park, Ji-Suk; Yun, Seok-In; Han, Junho

2018-04-01

Constructed coastal marsh regulates land-born nitrogen (N) loadings through salinity-dependent microbial N transformation processes. A hypothesis that salinity predominantly controls N removal in marsh was tested through incubation in a closed system with added- 15 NH 4 + using sediments collected from five sub-marshes in Shihwa marsh, Korea. Time-course patterns of concentrations and 15 N-atom% of soil-N pools were analyzed. Sediments having higher salinity and lower soil organic-C and acid-extractable organic-N exhibited slower rates of N mineralization and immobilization, nitrification, and denitrification. Rates of denitrification were not predicted well by sediment salinity but by its organic-C, indicating heterotrophic denitrification. Denitrification dominated N-loss from this marsh, and nitrogen removal capacity of this marsh was estimated at 337 kg N day -1 (9.9% of the daily N-loadings) considering the current rooting depth of common reeds (1.0 m). We showed that sediment N removal decreases with increasing salinity and can increase with increasing organic-C for heterotrophic denitrification. Copyright © 2018 Elsevier Ltd. All rights reserved.

Estimation of settling velocity of sediment particles in estuarine and coastal waters

NASA Astrophysics Data System (ADS)

Nasiha, Hussain J.; Shanmugam, Palanisamy

2018-04-01

A model for estimating the settling velocity of sediment particles (spherical and non-spherical) in estuarine and coastal waters is developed and validated using experimental data. The model combines the physical, optical and hydrodynamic properties of the particles and medium to estimate the sediment settling velocity. The well-known Stokes law is broadened to account for the influencing factors of settling velocity such as particle size, shape and density. To derive the model parameters, laboratory experiments were conducted using natural flaky seashells, spherical beach sands and ball-milled seashell powders. Spectral light backscattering measurements of settling particles in a water tank were made showing a distinct optical feature with a peak shifting from 470-490 nm to 500-520 nm for particle populations from spherical to flaky grains. This significant optical feature was used as a proxy to make a shape determination in the present model. Other parameters experimentally determined included specific gravity (ΔSG) , Corey shape factor (CSF) , median grain diameter (D50) , drag coefficient (Cd) and Reynolds number (Re) . The CSF values considered ranged from 0.2 for flaky to 1.0 for perfectly spherical grains and Reynolds numbers from 2.0 to 105 for the laminar to turbulent flow regimes. The specific gravity of submerged particles was optically derived and used along with these parameters to estimate the sediment settling velocity. Comparison with the experiment data showed that the present model estimated settling velocities of spherical and non-spherical particles that were closely consistent with the measured values. Findings revealed that for a given D50, the flaky particles caused a greater decrease in settling velocity than the spherical particles which suggests that the particle shape factor has a profound role in influencing the sediment settling velocity and drag coefficients, especially in transitional and turbulent flow regimes. The present model can

Antibiotic and heavy metal resistance in enterococci from coastal marine sediment.

PubMed

Vignaroli, Carla; Pasquaroli, Sonia; Citterio, Barbara; Di Cesare, Andrea; Mangiaterra, Gianmarco; Fattorini, Daniele; Biavasco, Francesca

2018-06-01

Sediment samples from three coastal sites - two beach resorts (Beach 1 and Beach 2 sites) and an area lying between an oil refinery and a river estuary (Estuarine site) - were analyzed for antibiotic- and heavy metal (HM)-resistant enterococci. A total of 123 enterococci, 36 E. faecium, 34 E. casseliflavus, 33 E. hirae, 5 E. faecalis, 3 E. durans, 3 E. gallinarum, and 9 Enterococcus spp, were recovered. Strains resistant to erythromycin, tetracycline and quinupristin/dalfopristin (Q/D) were recovered from all sites, whereas multidrug-resistant isolates were recovered only from "Beach 2" (14%) and "Estuarine" (3.7%). As regards HM resistance, the strains showed a high frequency (68%) of cadmium and/or copper resistance and uniform susceptibility to mercury. The prevalence of cadmium-resistant strains was significantly higher among erythromycin-resistant than among erythromycin-susceptible strains. A significant association between cadmium or copper resistance and Q/D resistance was also observed at "Estuarine" site. The levels of the two HMs in sediment from all sites were fairly low, ranging from 0.070 to 0.126 μg/g, for cadmium and from 1.00 to 7.64 μg/g for copper. Mercury was always undetectable. These findings are consistent with reports that low HM concentrations may contribute to co-selection of antibiotic-resistant bacterial strains, including enterococci. Copyright © 2018 Elsevier Ltd. All rights reserved.

Spatial distribution and metal contamination in the coastal sediments of Al-Khafji area, Arabian Gulf, Saudi Arabia.

PubMed

Alharbi, Talal; Alfaifi, Hussain; Almadani, Sattam A; El-Sorogy, Abdelbaset

2017-11-13

To document the spatial distribution and metal contamination in the coastal sediments of the Al-Khafji area in the northern part of the Saudi Arabian Gulf, 27 samples were collected for Al, V, Cr, Mn, Cu, Zn, Cd, Pb, Hg, Sr, As, Fe, Co, and Ni analysis using inductively coupled plasma-mass spectrometer (ICP-MS). The results revealed the following descending order of the metal concentrations: Sr > Fe > Al > As > Mn > Ni > V > Zn > Cr > Cu > Pb > Co > Hg > Cd. Average levels of enrichment factor of Sr, As, Hg, Cd, Ni, V, Cu, Co, and Pb were higher than 2 (218.10, 128.50, 80.94, 41.50, 12.31, 5.66, 2.95, 2.90, and 2.85, respectively) and that means the anthropogenic sources of these metals, while Al, Zn, Cr and Mn have enrichment factor less than 2, which implies natural sources. Average values of Sr, Hg, Cd, Cr, Ni, and As in the coastal sediments of Al-Khafji area were mostly higher than the values recorded from the background shale and earth crust and from those results along coasts of the Caspian Sea and the Mediterranean Sea. The highest levels of Cu in the northern part of the studied coastline might be due to Al-Khafji desalination plant, while levels of Al, Ni, Cr, Fe, Mn, Pb, and Zn in the central part may be a result of landfilling and industrial sewage. The highest levels of As, Cd, Co, Cu, Hg, and V in the southern part seem to be due to oil pollutants from Khafji Joint Operations (KJO). The higher values of Sr in the studied sediments in general and particularly in locality 7 could relate to the hypersalinity and aragonitic composition of the scleractinian corals abundant in that area.

Patterns and Processes in Marine Microeukaryotic Community Biogeography from Xiamen Coastal Waters and Intertidal Sediments, Southeast China

PubMed Central

Chen, Weidong; Pan, Yongbo; Yu, Lingyu; Yang, Jun; Zhang, Wenjing

2017-01-01

Microeukaryotes play key roles in the structure and functioning of marine ecosystems. Little is known about the relative importance of the processes that drive planktonic and benthic microeukaryotic biogeography in subtropical offshore areas. This study compares the microeukaryotic community compositions (MCCs) from offshore waters (n = 12) and intertidal sediments (n = 12) around Xiamen Island, southern China, using high-throughput sequencing of 18S rDNA. This work further quantifies the relative contributions of spatial and environmental variables on the distribution of marine MCCs (including total, dominant, rare and conditionally rare taxa). Our results showed that planktonic and benthic MCCs were significantly different, and the benthic richness (6627 OTUs) was much higher than that for plankton (4044 OTUs) with the same sequencing effort. Further, we found that benthic MCCs exhibited a significant distance-decay relationship, whereas the planktonic communities did not. After removing two unique sites (N2 and N3), however, 72% variation in planktonic community was explained well by stochastic processes. More importantly, both the environmental and spatial factors played significant roles in influencing the biogeography of total and dominant planktonic and benthic microeukaryotic communities, although their relative effects on these community variations were different. However, a high proportion of unexplained variation in the rare taxa (78.1–97.4%) and conditionally rare taxa (49.0–81.0%) indicated that more complex mechanisms may influence the assembly of the rare subcommunity. These results demonstrate that patterns and processes in marine microeukaryotic community assembly differ among the different habitats (coastal water vs. intertidal sediment) and different communities (total, dominant, rare and conditionally rare microeukaryotes), and provide novel insight on the microeukaryotic biogeography and ecological mechanisms in coastal waters and

Mercury pollution in Doha (Qatar) coastal environment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Al-Madfa, H.; Dahab, O.A.; Holail, H.

Surface water and sediment samples were collected from the Doha coastal area and analyzed for content of physico-chemical forms of mercury. Dissolved reactive Hg represented 81.0% of the total dissolved Hg. Organic Hg contributed only 5.0% of total Hg. Mercury showed a strong tendency to be associated with suspended matter in Doha coastal waters, as it represented about 73.0% of the total. Total Hg in bulk Doha surface sediments fluctuated between 0.14 and 1.75 [mu]g g[sup [minus]1] dry weight, with an average of 0.54 [+-] 0.46 [mu]g g[sup [minus]1] dry weight. The sediment fraction past 63 [mu]m contained 0.73 [+-]more » 0.60 [mu]g g[sup [minus]1] dry weight total Hg. Leachable and methyl Hg averaged 0.10 [+-] 0.11 and 0.02 [+-] 0.03 [mu]g g[sup [minus]1] dry weight, respectively, in the < 63-[mu]m sediment fraction. There is a general trend for all Hg species determined in water and sediments to decrease seaward. The significantly elevated Hg levels at certain locations indicated that the main Hg sources to Doha coastal environment are leachate from the solid waste disposal site, the two harbors, and surface-water discharge.« less

Presence, concentrations and risk assessment of selected antibiotic residues in sediments and near-bottom waters collected from the Polish coastal zone in the southern Baltic Sea - Summary of 3years of studies.

PubMed

Siedlewicz, Grzegorz; Białk-Bielińska, Anna; Borecka, Marta; Winogradow, Aleksandra; Stepnowski, Piotr; Pazdro, Ksenia

2018-04-01

Concentrations of selected antibiotic compounds from different groups were measured in sediment samples (14 analytes) and in near-bottom water samples (12 analytes) collected in 2011-2013 from the southern Baltic Sea (Polish coastal zone). Antibiotics were determined at concentration levels of a few to hundreds of ng g -1 d.w. in sediments and ng L -1 in near-bottom waters. The most frequently detected compounds were sulfamethoxazole, trimethoprim, oxytetracycline in sediments and sulfamethoxazole and trimethoprim in near-bottom waters. The occurrence of the identified antibiotics was characterized by spatial and temporal variability. A statistically important correlation was observed between sediment organic matter content and the concentrations of sulfachloropyridazine and oxytetracycline. Risk assessment analyses revealed a potential high risk of sulfamethoxazole contamination in near-bottom waters and of contamination by sulfamethoxazole, trimethoprim and tetracyclines in sediments. Both chemical and risk assessment analyses show that the coastal area of the southern Baltic Sea is highly exposed to antibiotic residues. Copyright © 2017 Elsevier Ltd. All rights reserved.

Coastal Studies in a Comprehensive Summer Field Geology Course.

ERIC Educational Resources Information Center

Cameron, Barry; Jones, Richard J.

1979-01-01

Describes a college geology course that incorporates a coastal segment. Field studies are done on Plum Island and include examining beaches, dune fields, and an adjacent marsh and spit. Topics include sedimentation, coastal geomorphology, botanical effects, and coastal studies methodology. (MA)

Spatial distribution and ecological risk assessment of heavy metals in coastal surface sediments in the Hebei Province offshore area, Bohai Sea, China

USGS Publications Warehouse

Ding, Xigui; Ye, Siyuan; Yuan, Hongming; Krauss, Ken W.

2018-01-01

Seven hundred and nine surface sediment samples, along with deeper sediment samples, were collected from Hebei Province along the coastal section of the Bohai Sea, China, and analyzed for grain size, concentrations of organic carbon (Corg) and heavy metals (Cu, Pb, Zn, Cr, Cd, As, and Hg). Results indicated that the average concentrations in the sediments were 16.1 mg/kg (Cu), 19.4 mg/kg (Pb), 50 mg/kg (Zn), 48.8 mg/kg (Cr), 0.1 mg/kg (Cd), 8.4 mg/kg (As), and 20.3 μg/kg (Hg). These concentrations generally met the China Marine Sediment Quality criteria. However, both pollution assessments indicated moderate to strong Cd and Hg contamination in the study area. The potential ecological risk index suggested that the combined ecological risk of the seven studied metals may be low, but that 24.5% of the sites, where sediments were more finer and higher in Corg concentration, had high ecological risk in Hg and Cd pollution.

Regional Sediment Management (RSM) Modeling Tools: Integration of Advanced Sediment Transport Tools into HEC-RAS

DTIC Science & Technology

2014-06-01

Integration of Advanced Sediment Transport Tools into HEC-RAS by Paul M. Boyd and Stanford A. Gibson PURPOSE: This Coastal and Hydraulics Engineering...Technical Note (CHETN) summarizes the development and initial testing of new sediment transport and modeling tools developed by the U.S. Army Corps...sediment transport within the USACE HEC River Analysis System (HEC-RAS) software package and to determine its applicability to Regional Sediment

Seagrass impact on sediment exchange between tidal flats and salt Marsh, and the sediment budget of shallow bays

USGS Publications Warehouse

Donatelli, Carmine; Ganju, Neil Kamal; Fagherazzi, Sergio; Leonardi, Nicoletta

2018-01-01

surroundings and are therefore frequently referred to as ecological engineers. The effect of seagrasses on coastal bay resilience and sediment transport dynamics is understudied. Here we use six historical maps of seagrass distribution in Barnegat Bay, USA, to investigate the role of these vegetated surfaces on the sediment storage capacity of shallow bays. Analyses are carried out by means of the Coupled-Ocean-Atmosphere-Wave-Sediment Transport (COAWST) numerical modeling framework. Results show that a decline in the extent of seagrass meadows reduces the sediment mass potentially stored within bay systems. The presence of seagrass reduces shear stress values across the entire bay, including unvegetated areas, and promotes sediment deposition on tidal flats. On the other hand, the presence of seagrasses decreases suspended sediment concentrations, which in turn reduces the delivery of sediment to marsh platforms. Results highlight the relevance of seagrasses for the long-term survival of coastal ecosystems, and the complex dynamics regulating the interaction between subtidal and intertidal landscapes.

[Simulated study of algal fatty acid degradation in hypoxia seawater-sediment interface along China coastal area].

PubMed

Sui, Wei-Wei; Ding, Hai-Bing; Yang, Gui-Peng; Lu, Xiao-Lan; Li, Wen-Juan; Sun, Li-Qun

2013-11-01

Series of laboratory incubation experiments were conducted to simulate degradation of organic matter in sediment-seawater interface in hypoxia enviroments along China coastal area. Under four different redox conditions (oxygen saturation: 100%, 50%, 25% and 0%), degradations of seveal biomarkers originated from Skeletonema costatum, a typical red tide alage along China coastal area were tracked. By analyzing concentrations of four fatty acid biomarkers [14:0, 16:0, 16:1(7) and 20:5] obtained at various sampling time, results showed that their concentrations decreased significantly after 2-3 weeks' incubation. Then, their concentrations changed very slowly or very little. However, degradation of the four fatty acids varied dramatically in different incubation systems. Fatty acids 14:0, 16:1(7) and 20:5 were degraded completely in all incubation systems after two-month incubation, but 25% to 35% of 16:0 was reserved in the systems. Based on multi-G model, degradations of the four fatty acids were quantively described. The results indicated that all four fatty acids had fast-degraded and slow-degraded fractions. Their degradation rate constants (k(av)) ranged from 0.079 to 0.84 d(-1). The fastest degradation of 14:0 and 16:1 (7) occurred under 25% oxygen concentrations. For these two compounds, in the fastest degradation system, their k(av), values were 2.3 folds and 1.7 folds higher than those in the slowest degradation system [50% oxygen saturation for 14:0 and 100% oxygen saturation for 16:1(7)] respectively. The 16:0 was degraded fastest under the anoxic condition and slowest under the 50% oxygen saturation. The ratio of the two k(av)s was 2.1. The k(av)s of 20:5 had a positive relationship with oxygen saturations. Results of this study suggested that besides oxgen saturations, structure and features of organic compounds, roles of microbe in the envrioments and etc. might affect degradations of fatty acids in S. costatum in hypoxia sediment-seawater interface

Heavy metal contamination and ecological risk assessment in the surface sediments of the coastal area surrounding the industrial complex of Gabes city, Gulf of Gabes, SE Tunisia.

PubMed

El Zrelli, Radhouan; Courjault-Radé, Pierre; Rabaoui, Lotfi; Castet, Sylvie; Michel, Sylvain; Bejaoui, Nejla

2015-12-30

In the present study, the concentrations of 6 trace metals (Hg, Cd, Cu, Pb, Cr and Zn) were assessed in the surface sediments of the central coastal area of Gabes Gulf to determine their contamination status, source, spatial distribution and ecological risks. The ranking of metal contents was found to be Zn>Cd>Cr>Pb>Cu>Hg. Correlation analysis indicated that Cd and Zn derived mainly from the Tunisian Chemical Group phosphogypsum. The other pollutants may originate from other industrial wastes. Metallic contamination was detected in the south of chemical complex, especially in the inter-harbor zone, where the ecological risk of surface sediments is the highest, implying potential negative impacts of industrial pollutants. The spatial distribution of pollutants seems to be due to the effect of harbor installations and coastal currents. The metallic pollution status of surface sediments of Gabes Gulf is obvious, very worrying and requires rapid intervention. Copyright © 2015 Elsevier Ltd. All rights reserved.

Assessing and modeling sediment mobility in estuarine and coastal settings due to extreme climate events from natural short-lived isotope distribution

NASA Astrophysics Data System (ADS)

Ghaleb, Bassam; Hillaire-Marcel, Claude; Ruiz Fernandez, Ana-Carolina; Sanchez Cabeza, Joan-Albert

2016-04-01

Climatic events (e.g. floods, storminess) and management activities (e.g. dredging) may result in the burial or removal and re-suspension of sediments in estuaries and coastal areas. When such sediments are contaminated, such processes may either help restoring better chemical environments or lead to their long-term contamination. Geochemical signatures in surface sediments may help identifying such sedimentological events. However, short-lived isotope data are generally required to set time-constraints on their occurrence. Whereas 210Pb and radioactive fallout isotope contents can help setting time constraints at ~50 to ~100 yr-time scales, natural disequilibria in the 232Th-228Ra-228Th sequence do provide information on processes which occurred within the last 30 yrs, as illustrated in the present study. Box-cored sediments from the Saguenay Fjord and lower estuary of the St. Lawrence (Canada) as well as from estuaries and lagoons from the Sinaloa Coast (Mexico) are used to document the behavior of these isotopes either under relatively steady conditions (St. Lawrence estuary) or under high-frequency extreme climate events (storms and floods; Saguenay Fjord, Coastal Sinaloa). 228Th/232Th activity ratios were determined by chemical extraction of Th and alpha counting of unspiked samples, rapidly after sampling (228Th/232Th). The activity of the intermediate isotope 228Ra was then estimated based on replicate measurements on aliquot samples made a few years later. Under steady conditions, core-top sediment shows an excess in 228Th vs 232Th (AR ~ 1.6), whereas the intermediate 228Ra depicts a deficit vs its parent 232Th (AR ~0.6). Downcore, radioactive decay carries rapidly 228Th-activities to those of the parent 228Ra within about 10 yrs (i.e., ~ 5 half-lives of 228Th), then both move during the next ~20 yrs (~ i.e., ~ 5 half-lives of 228Ra, when added to the 10 yrs of 228Th-excess) towards secular equilibrium with the parent long-lived 232Th. A few algorithms

Microbial community composition along a 50 000-year lacustrine sediment sequence

PubMed Central

Ariztegui, Daniel; Horn, Fabian; Kallmeyer, Jens; Orsi, William D

2018-01-01

Abstract For decades, microbial community composition in subseafloor sediments has been the focus of extensive studies. In deep lacustrine sediments, however, the taxonomic composition of microbial communities remains undercharacterized. Greater knowledge on microbial diversity in lacustrine sediments would improve our understanding of how environmental factors, and resulting selective pressures, shape subsurface biospheres in marine and freshwater sediments. Using high-throughput sequencing of 16S rRNA genes across high-resolution climate intervals covering the last 50 000 years in Laguna Potrok Aike, Argentina, we identified changes in microbial populations in response to both past environmental conditions and geochemical changes of the sediment during burial. Microbial communities in Holocene sediments were most diverse, reflecting a layering of taxa linked to electron acceptors availability. In deeper intervals, the data show that salinity, organic matter and the depositional conditions over the Last Glacial-interglacial cycle were all selective pressures in the deep lacustrine assemblage resulting in a genetically distinct biosphere from the surface dominated primarily by Bathyarchaeota and Atribacteria groups. However, similar to marine sediments, some dominant taxa in the shallow subsurface persisted into the subsurface as minor fraction of the community. The subsequent establishment of a deep subsurface community likely results from a combination of paleoenvironmental factors that have shaped the pool of available substrates, together with substrate depletion and/or reworking of organic matter with depth. PMID:29471361

On modeling heterogeneous coastal sediment transport - A numerical study using multiphase Eulerian and Euler-Lagrangian approaches

NASA Astrophysics Data System (ADS)

Cheng, Z.; Yu, X.; Hsu, T. J.; Calantoni, J.; Chauchat, J.

2016-02-01

Regional scale coastal evolution models do not explicitly resolve wave-driven sediment transport and must rely on bedload/suspended modules that utilize empirical assumptions. Under extreme wave events or in regions of high sediment heterogeneity, these empirical bedload/suspended load modules may need to be reevaluated with detailed observation and more sophisticated small-scale models. In the past decade, significant research efforts have been devoted to modeling sediment transport using multiphase Eulerian or Euler-Lagrangian approaches. Recently, an open-source multi-dimensional Reynolds-averaged two-phase sediment transport model, SedFOAM is developed by the authors and it has been adopted by many researchers to study momentary bed failure, granular rheology in sheet flow and scour around structures. In this abstract, we further report our recent progress made in extending the model with 3D turbulence-resolving capability and to model the sediment phase with the Discrete Element method (DEM). Adopting the large-eddy simulation methodology, we validate the 3D model with measured fine sediment transport is oscillatory sheet flow and demonstrate that the model is able to resolve sediment burst events during flow reversals. To better resolve the intergranular interactions and to model heterogeneous properties of sediment (e.g., mixed grain sizes and grain shape), we use an Euler-Lagrangian solver called CFDEM, which couples OpenFOAM for the fluid phase and LIGGGHTS for the particle phase. We improve the model by better enforcing conservation of mass in the pressure solver. The modified CFDEM solver is validated with measured oscillatory sheet flow data for coarse sand and we demonstrated that the model can reproduce the well-known armoring effects. We show that under Stokes second-order wave forcing, the armoring effect is more significant during the energetic positive peak, and hence the net onshore transport is reduced. Preliminary results modeling the shape

Seagrasses and the Coastal Marine Environment

ERIC Educational Resources Information Center

Phillips, Ronald C.

1978-01-01

Coastal ecosystems are the most highly productive in the world. This article discusses seagrasses, major coastal producers, and provides information on their ecology, productivity, position in food chains, and role in sediment stabilization. Recent attempts to restore seagrasses in areas of massive kills are described. (MA)

Holocene coastal development on the Florida peninsula

USGS Publications Warehouse

Davis, Richard; Hine, Albert C.; Shinn, Eugene A.

1992-01-01

The Florida peninsula contains five distinct coastal sections, each resulting from its own spectrum of coastal processes and sediment availability during a slowly rising, late Holocene sea level. The east coast barrier system is wave-dominated and has a large cuspate foreland (Cape Canaveral) near its middle. The Florida Keys and reef tract represent the only coastal carbonate system in the continental United States. An open-marine mangrove coast characterizes the low-energy, tide-dominated southwest part of the State. The central Gulf barrier system displays a mixed-energy morphology in a microtidal, low-energy setting. The open-coast marsh system of the Big Bend area that is north of the barrier system is also tide dominated, and is developed on a sediment-starved carbonate platform.The oldest preserved coastal Holocene section is the Florida Keys area where, at about 6 to 8 ka, sequences accumulated during the Holocene. Most of the remainder of the peninsular coast is characterized by terrigenous sequences less than 3 ka. The younger sequences accumulated almost exclusively from reworking of older strata without benefit of additional sediment supply from land.

3D model of radionuclide dispersion in coastal areas with multifraction cohesive and non-cohesive sediments

NASA Astrophysics Data System (ADS)

Brovchenko, Igor; Maderich, Vladimir; Jung, Kyung Tae

2015-04-01

We developed new radionuclide dispersion model that may be used in coastal areas, rivers and estuaries with non-uniform distribution of suspended and bed sediments both cohesive and non-cohesive types. Model describes radionuclides concentration in dissolved phase in water column, particulated phase on suspended sediments on each sediment class types, bed sediments and pore water. The transfer of activity between the water column and the pore water in the upper layer of the bottom sediment is governed by diffusion processes. The phase exchange between dissolved and particulate radionuclides is written in terms of desorption rate a12 (s-1) and distribution coefficient Kd,iw and Kd,ib (m3/kg) for water column and for bottom deposit, respectively. Following (Periáñez et al., 1996) the dependence of distribution coefficients is inversely proportional to the sediment particle size. For simulation of 3D circulation, turbulent diffusion and wave fields a hydrostatic model SELFE (Roland et. al. 2010) that solves Reynolds-stress averaged Navier-Stokes (RANS) equations and Wave Action transport equation on the unstructured grids was used. Simulation of suspended sediment concentration and bed sediments composition is based on (L. Pinto et. al., 2012) approach that originally was developed for non-cohesive sediments. In present study we modified this approach to include possibility of simulating mixture of cohesive and non-cohesive sediments by implementing parameterizations for erosion and deposition fluxes for cohesive sediments and by implementing flocculation model for determining settling velocity of cohesive flocs. Model of sediment transport was calibrated on measurements in the Yellow Sea which is shallow tidal basin with strongly non-uniform distribution of suspended and bed sediments. Model of radionuclide dispersion was verified on measurements of 137Cs concentration in surface water and bed sediments after Fukushima Daiichi nuclear accident. References Peri

Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guibert, Lilian M.; Loviso, Claudia L.; Borglin, Sharon

We aimed to gain insight into the alkane degradation potential of microbial communities from chronically polluted sediments of a subantarctic coastal environment using a combination of metagenomic approaches. A total of 6178 sequences annotated as alkane-1-monooxygenases (EC 1.14.15.3) were retrieved from a shotgun metagenomic dataset that included two sites analyzed in triplicate. The majority of the sequences binned with AlkB described in Bacteroidetes (32 ± 13 %) or Proteobacteria (29 ± 7 %), although a large proportion remained unclassified at the phylum level. Operational taxonomic unit (OTU)-based analyses showed small differences in AlkB distribution among samples that could be correlatedmore » with alkane concentrations, as well as with site-specific variations in pH and salinity. A number of low-abundance OTUs, mostly affiliated with Actinobacterial sequences, were found to be only present in the most contaminated samples. On the other hand, the molecular screening of a large-insert metagenomic library of intertidal sediments from one of the sampling sites identified two genomic fragments containing novel alkB gene sequences, as well as various contiguous genes related to lipid metabolism. Both genomic fragments were affiliated with the phylum Planctomycetes, and one could be further assigned to the genus Rhodopirellula due to the presence of a partial sequence of the 23S ribosomal RNA (rRNA) gene. This work highlights the diversity of bacterial groups contributing to the alkane degradation potential and reveals patterns of functional diversity in relation with environmental stressors in a chronically polluted, high-latitude coastal environment. In addition, alkane biodegradation genes are described for the first time in members of Planctomycetes.« less

Hourly and daily variation of sediment redox potential in tidal wetland sediments

USGS Publications Warehouse

Catallo, W. James

1999-01-01

Variation of electrochemical oxidation-reduction (redox) potential was examined in surface salt march sediments under conditions of flooding and tidal simulation in mesocosms and field sites. Time series were generated of redox potential measured in sediment profiles at 2-10 cm depth using combination Pt-Ag/AgCl (ORP) electrodes. Redox potential data were acquired at rapid rates (1-55 samples/h) over extended periods (3-104 days) along with similar times series of temperature (water, air, soil) and pH. It was found that redox potential vaired as a result of water level changes and was unrelated to diurnal changes in temperature or pH, the latter of which changed by 370 mV redox potential decrease in under 48 hours). Attenuatoin of microbial activity by [gamma] y-radiation and toxic chemicals elimintated this response. In tidal salt marsh mesocosms where the sediment-plant assemblages were exposed to a simulated diurnal tide, redox potenial oscillations of 40-300 mV amplitude were recoded that has the same periodicity as the flood-drain cycle. Periodic redoc potential time series were observed repeatedly in sediments receiving tidal pulsing but not in those sediments exposed to static hydrological conditions. Data collected over 12 days from a coastal marsh site experiencing diurnal tides showed similar fluctuations in redox potential. Data from the experimentents indicated that (a) redox potential can be a dynamic, nonlinear variable in coastal and estuarine wetland sediments over hourly and daily scales, and the designs of biogeochemical experiments should reflect this, (b) redox potential can change rapidly and signigicantly in coastal wetland sediments in response of flooding and draining, (c) microbial community processes are primarily determinants of the time course of redox potential in wetland sediments, and elimination of inhibition of microbial activity (e.g. by pollutants) can significantly alter that behavior, and (d) fast redox potential dynamics appear

Modeling transport and deposition of the Mekong River sediment

USGS Publications Warehouse

Xue, Zuo; He, Ruoying; Liu, J. Paul; Warner, John C.

2012-01-01

A Coupled Wave–Ocean–SedimentTransport Model was used to hindcast coastal circulation and fine sedimenttransport on the Mekong shelf in southeastern Asian in 2005. Comparisons with limited observations showed that the model simulation captured the regional patterns and temporal variability of surface wave, sea level, and suspended sediment concentration reasonably well. Significant seasonality in sedimenttransport was revealed. In summer, a large amount of fluvial sediments was delivered and deposited near the MekongRiver mouth. In the following winter, strong ocean mixing, and coastal current lead to resuspension and southwestward dispersal of a small fraction of previously deposited sediments. Model sensitivity experiments (with reduced physics) were performed to investigate the impact of tides, waves, and remotely forced ambient currents on the transport and dispersal of the fluvial sediment. Strong wave mixing and downwelling-favorable coastal current associated with the more energetic northeast monsoon in the winter season are the main factors controlling the southwestward along-shelf transport.

Environmental availability of potentially toxic elements in estuarine sediments of the Cananéia-Iguape coastal system, Southeastern Brazil.

PubMed

Tramonte, Keila Modesto; Figueira, Rubens Cesar Lopes; de Lima Ferreira, Paulo Alves; Ribeiro, Andreza Portella; Batista, Miriam Fernanda; de Mahiques, Michel Michaelovitch

2016-02-15

The Cananéia-Iguape system is located in a Southeastern Brazilian coastal region, acknowledged by UNESCO as Biosphere Reserve of the Atlantic Rainforest. This system underwent important environmental changes due to the opening of the artificial channel of Valo Grande and by past intensive Pb ore mining activities. In view of this scenario, this study evaluated Cu, Pb and Zn availability in sediments from Cananéia-Iguape system, based on the content associated with the main components of the sediments. Moreover, in order to assess local contamination, the metals' contents were compared to Canadian quality guidelines, the past levels of metals preceding the mining activities and background sediment values. Concerning Cu and Zn in a state of chemical remobilization, both elements would possibly present no harm to the local communities. However, Pb available content exceeded the comparison values in various sampling sites, suggesting the need of monitoring regarding its bioavailability. Copyright © 2015 Elsevier Ltd. All rights reserved.

Dispersal and deposition of river sediments in coastal seas: Models from Asia and the tropics

NASA Astrophysics Data System (ADS)

Wright, L. D.

The diverse mechanisms by which river-borne sediments are dispersed into coastal oceans and the associated patterns of deposition are considered for some tropical and Asian river mouth dispersal systems: the Huanghe (Yellow River), which enters the Bohai Gulf (China), the Purari River which enters the Gulf of Papua (Papua New Guinea) and the Jaba River, which enters Empress Augusta Bay (Bougainville, Papua New Guinea). These models contrast sharply with 'conventional' models such as that of the Mississippi, although in different respects. Extremely high suspended sediment concentrations off the Huanghe mouth cause sinking, gravity-driven plumes which produce rapid deposition very near the mouth; extremely rapid seaward growth of the subaqueous delta results. Although the average water discharge of the Purari exceeds that of the Huanghe, the average sediment discharge from the Purari is an order of magnitude less than that of the Huanghe. Suspended sediments transported via buoyant plumes from the Purari mouth are trapped inshore by the southeasterly trades and have their ultimate sink in the tidal estuaries to the west of the mouths rather than offshore. The Jaba is a small river with a very steep gradient and an extremely high bed load relative to water discharge. It has constructed a protruding and rapidly evolving delta. Literature on the Indonesian rivers Solo and Porong dispersal systems suggests that those systems may, at different times, be subject to processes similar to those which operate off the mouths of the Huanghe, Purari and Jaba although no single, direct analogies can be made.

Trace element fluxes in sediments of an environmentally impacted river from a coastal zone of Brazil.

PubMed

da Silva, Yuri Jacques Agra Bezerra; Cantalice, José Ramon Barros; Singh, Vijay P; do Nascimento, Clístenes Williams Araújo; Piscoya, Victor Casimiro; Guerra, Sérgio M S

2015-10-01

Data regarding trace element concentrations and fluxes in suspended sediments and bedload are scarce. To fill this gap and meet the international need to include polluted rivers in future world estimation of trace element fluxes, this study aimed to determine the trace element fluxes in suspended sediment and bedload of an environmentally impacted river in Brazil. Water, suspended sediment, and bedload from both the upstream and the downstream cross sections were collected. To collect both the suspended sediment and water samples, we used the US DH-48. Bedload measurements were carried out using the US BLH 84 sampler. Concentrations of Cd, Cr, Cu, Fe, Mn, Ni, Pb, and Zn were determined by inductively coupled plasma (ICP-OES). As and Hg were determined by an atomic absorption spectrophotometer (AA-FIAS). The suspended sediments contributed more than 99 % of the trace element flux. By far Pb and to a less extent Zn at the downstream site represents major concerns. The yields of Pb and Zn in suspended sediments were 4.20 and 2.93 kg km(2) year(-1), respectively. These yields were higher than the values reported for Pb and Zn for Tuul River (highly impacted by mining activities), 1.60 and 1.30 kg km(2) year(-1), respectively, as well as the Pb yield (suspended + dissolved) to the sea of some Mediterranean rivers equal to 3.4 kg km(2) year(-1). Therefore, the highest flux and yield of Pb and Zn in Ipojuca River highlighted the importance to include medium and small rivers-often overlooked in global and regional studies-in the future estimation of world trace element fluxes in order to protect estuaries and coastal zones.