Cryptographer

ERIC Educational Resources Information Center

Sullivan, Megan

2005-01-01

For the general public, the field of cryptography has recently become famous as the method used to uncover secrets in Dan Brown's fictional bestseller, The Da Vinci Code. But the science of cryptography has been popular for centuries--secret hieroglyphics discovered in Egypt suggest that code-making dates back almost 4,000 years. In today's…

Characterization of the Lymantria dispar nucleopolyhedrovirus 25K FP gene

Treesearch

David S. Bischoff; James M. Slavicek

1996-01-01

The Lymantria dispar nucleopolyhedrovirus (LdMNPV) gene encoding the 25K FP protein has been cloned and sequenced. The 25KFP gene codes for a 217 amino acid protein with a predicted molecular mass of 24870 Da. Expression of the 25K FP protein in a rabbit reticulocyte system generated a 27 kDa protein, in close agreement with the...

A murC gene in Porphyromonas gingivalis 381.

PubMed

Ansai, T; Yamashita, Y; Awano, S; Shibata, Y; Wachi, M; Nagai, K; Takehara, T

1995-09-01

The gene encoding a 51 kDa polypeptide of Porphyromonas gingivalis 381 was isolated by immunoblotting using an antiserum raised against P. gingivalis alkaline phosphatase. DNA sequence analysis of a 2.5 kb DNA fragment containing a gene encoding the 51 kDa protein revealed one complete and two incomplete ORFs. Database searches using the FASTA program revealed significant homology between the P. gingivalis 51 kDa protein and the MurC protein of Escherichia coli, which functions in peptidoglycan synthesis. The cloned 51 kDa protein encoded a functional product that complemented an E. coli murC mutant. Moreover, the ORF just upstream of murC coded for a protein that was 31% homologous with the E. coli MurG protein. The ORF just downstream of murC coded for a protein that was 17% homologous with the Streptococcus pneumoniae penicillin-binding protein 2B (PBP2B), which functions in peptidoglycan synthesis and is responsible for antibiotic resistance. These results suggest that P. gingivalis contains a homologue of the E. coli peptidoglycan synthesis gene murC and indicate the possibility of a cluster of genes responsible for cell division and cell growth, as in the E. coli mra region.

Molecular cloning and sequence analysis of the gene coding for the 57kDa soluble antigen of the salmonid fish pathogen Renibacterium salmoninarum

USGS Publications Warehouse

Chien, Maw-Sheng; Gilbert , Teresa L.; Huang, Chienjin; Landolt, Marsha L.; O'Hara, Patrick J.; Winton, James R.

1992-01-01

The complete sequence coding for the 57-kDa major soluble antigen of the salmonid fish pathogen, Renibacterium salmoninarum, was determined. The gene contained an opening reading frame of 1671 nucleotides coding for a protein of 557 amino acids with a calculated Mr value of 57190. The first 26 amino acids constituted a signal peptide. The deduced sequence for amino acid residues 27–61 was in agreement with the 35 N-terminal amino acid residues determined by microsequencing, suggesting the protein in synthesized as a 557-amino acid precursor and processed to produce a mature protein of Mr 54505. Two regions of the protein contained imperfect direct repeats. The first region contained two copies of an 81-residue repeat, the second contained five copies of an unrelated 25-residue repeat. Also, a perfect inverted repeat (including three in-frame UAA stop codons) was observed at the carboxyl-terminus of the gene.

Aerodynamic design of the Cal Poly Da Vinci Human-Powered Helicopter

NASA Technical Reports Server (NTRS)

Larwood, Scott; Saiki, Neal

1990-01-01

This paper will discuss the methodology used in designing the rotor and drive propellers for the third generation Cal Poly Da Vinci Human-Powered Helicopter. The rotor was designed using a lifting surface, uniform inflow hover analysis code and the propeller was designed using a minimum induced-loss method. Construction, geometry, and operating considerations are discussed as they impact the designs. Optimization of the design performance is also explained. The propellers were tested in a wind tunnel and results are compared with theoretical data. Successful flight tests of the Da Vinci III are discussed.

The China-Africa Connection: Implications for United States Foreign Policy

DTIC Science & Technology

1992-06-01

a Independencia total de Angola(UNITA) UNITA Governo Revolucionhrio de Angola _.. ... no Exillo LGRAE) GRAE Mozambique Frente de Liberta;&o de ...Moqambique (FRELIMO) FRELIMO Comite Revolucionhrio de ,, Mocambigue (COREMO) COREMO Portuguese Partido Africano da Independencia Guinea da Guind e Cabo Verde...Postgraduate School Naval Postgraduate School NS _-. ’E_ ADURESSb (UIly, MStae, anda 2P c- de ) 71). ADDRESS (GiIy, SMate, and/-JP Code) Monterey, CA 93943

A catalogue of the types of Stratiomyidae (Diptera: Brachycera) in the collection of the Museu de Zoologia da Universidade de São Paulo, Brazil.

PubMed

Fachin, Diego Aguilar; Lamas, Carlos José Einicker

2015-02-12

Following a recommendation of the International Code of Zoological Nomenclature, a catalogue of the type specimens of Stratiomyidae (Diptera: Brachycera) held in the collection of the Museu de Zoologia da Universidade de São Paulo, Brazil (MZUSP) is provided, with information on 30 type specimens (including 14 primary types) of 17 Neotropical species.

Cloning and expression of 130-kd mosquito-larvicidal delta-endotoxin gene of Bacillus thuringiensis var. Israelensis in Escherichia coli.

PubMed

Angsuthanasombat, C; Chungjatupornchai, W; Kertbundit, S; Luxananil, P; Settasatian, C; Wilairat, P; Panyim, S

1987-07-01

Five recombinant E. coli clones exhibiting toxicity to Aedes aegypti larvae were obtained from a library of 800 clones containing XbaI DNA fragments of 110 kb plasmid from B. thuringiensis var. israelensis. All the five clones (pMU 14/258/303/388/679) had the same 3.8-kb insert and encoded a major protein of 130 kDa which was highly toxic to A. aegypti larvae. Three clones (pMU 258/303/388) transcribed the 130 kD a gene in the same direction as that of lac Z promoter of pUC12 vector whereas the transcription of the other two (pMU 14/679) was in the opposite direction. A 1.9-kb fragment of the 3.8 kb insert coded for a protein of 65 kDa. Partial DNA sequence of the 3.8 kb insert, corresponding to the 5'-terminal of the 130 kDa gene, revealed a continuous reading frame, a Shine-Dalgarno sequence and a tentative 5'-regulatory region. These results demonstrated that the 3.8 kb insert is a minimal DNA fragment containing a regulatory region plus the coding sequence of the 130 kDa protein that is highly toxic to mosquito larvae.

Euglena gracilis chloroplast DNA: analysis of a 1.6 kb intron of the psb C gene containing an open reading frame of 458 codons.

PubMed

Montandon, P E; Vasserot, A; Stutz, E

1986-01-01

We retrieved a 1.6 kbp intron separating two exons of the psb C gene which codes for the 44 kDa reaction center protein of photosystem II. This intron is 3 to 4 times the size of all previously sequenced Euglena gracilis chloroplast introns. It contains an open reading frame of 458 codons potentially coding for a basic protein of 54 kDa of yet unknown function. The intron boundaries follow consensus sequences established for chloroplast introns related to class II and nuclear pre-mRNA introns. Its 3'-terminal segment has structural features similar to class II mitochondrial introns with an invariant base A as possible branch point for lariat formation.

Arctic Ice Dynamics Joint Experiment 1975-1976. Physical Oceanography Data Report, Salinity, Temperature and Depth Data, Camp Blue Fox. Volume II.

DTIC Science & Technology

1980-02-01

to LM b. a w ewe%- ww re mOOc 4" o 0.NWmotvviiOf wt 00 f4Crfl ft -wm o.e. &*1 NO P..w N N o%9 a in - - -da inN 4p m a - U . .......0...V N m...200 1 Attn: Code 428AR 3 Attn: Code 420 a Director Naval Research Laboratory Washington, D.C. 20375 Attn: Library . Code 2620 1 U.S. Naval Research

Dopaminergic control of cognitive flexibility in humans and animals

PubMed Central

Klanker, Marianne; Feenstra, Matthijs; Denys, Damiaan

2013-01-01

Striatal dopamine (DA) is thought to code for learned associations between cues and reinforcers and to mediate approach behavior toward a reward. Less is known about the contribution of DA to cognitive flexibility—the ability to adapt behavior in response to changes in the environment. Altered reward processing and impairments in cognitive flexibility are observed in psychiatric disorders such as obsessive compulsive disorder (OCD). Patients with this disorder show a disruption of functioning in the frontostriatal circuit and alterations in DA signaling. In this review we summarize findings from animal and human studies that have investigated the involvement of striatal DA in cognitive flexibility. These findings may provide a better understanding of the role of dopaminergic dysfunction in cognitive inflexibility in psychiatric disorders, such as OCD. PMID:24204329

Explaining the disease phenotype of intergenic SNP through predicted long range regulation

PubMed Central

Chen, Jingqi; Tian, Weidong

2016-01-01

Thousands of disease-associated SNPs (daSNPs) are located in intergenic regions (IGR), making it difficult to understand their association with disease phenotypes. Recent analysis found that non-coding daSNPs were frequently located in or approximate to regulatory elements, inspiring us to try to explain the disease phenotypes of IGR daSNPs through nearby regulatory sequences. Hence, after locating the nearest distal regulatory element (DRE) to a given IGR daSNP, we applied a computational method named INTREPID to predict the target genes regulated by the DRE, and then investigated their functional relevance to the IGR daSNP's disease phenotypes. 36.8% of all IGR daSNP-disease phenotype associations investigated were possibly explainable through the predicted target genes, which were enriched with, were functionally relevant to, or consisted of the corresponding disease genes. This proportion could be further increased to 60.5% if the LD SNPs of daSNPs were also considered. Furthermore, the predicted SNP-target gene pairs were enriched with known eQTL/mQTL SNP-gene relationships. Overall, it's likely that IGR daSNPs may contribute to disease phenotypes by interfering with the regulatory function of their nearby DREs and causing abnormal expression of disease genes. PMID:27280978

The 1-aminocyclopropane-1-carboxylate synthase of Cucurbita. Purification, properties, expression in Escherichia coli, and primary structure determination by DNA sequence analysis.

PubMed

Sato, T; Oeller, P W; Theologis, A

1991-02-25

The key regulatory enzyme in the biosynthetic pathway of the plant hormone ethylene is 1-aminocyclopropane-1-carboxylic acid (ACC) synthase (EC 4.4.1.14). We have partially purified ACC synthase 6,000-fold from Cucurbita fruit tissue treated with indoleacetic acid + benzyladenine + aminooxyacetic acid + LiCl. The enzyme has a specific activity of 35,000 nmol/h/mg protein, a pH optimum of 9.5, an isoelectric point of 5.0, a Km of 17 microM with respect to S-adenosylmethionine, and is a dimer of two identical subunits of approximately 46,000 Da each. The subunit exists in vivo as a 55,000-Da species similar in size to the primary in vitro translation product. DNA sequence analysis of the cDNA clone pACC1 revealed that the coding region of the ACC synthase mRNA spans 493 amino acids corresponding to a 55,779-Da polypeptide; and expression of the coding sequence (pACC1) in Escherichia coli as a COOH terminus hybrid of beta-galactosidase or as a nonhybrid polypeptide catalyzed the conversion of S-adenosylmethionine to ACC (Sato, T., and Theologis, A. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 6621-6625). Immunoblotting experiments herein show that the molecular mass of the beta-galactosidase hybrid polypeptide is 170,000 Da, and the size of the largest nonhybrid polypeptide is 53,000 Da. The data suggest that the enzyme is post-translationally processed during protein purification.

The location of a disease-associated polymorphism and genomic structure of the human 52-kDa Ro/SSA locus (SSA1)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tsugu, H.; Horowitz, R.; Gibson, N.

1994-12-01

Sera from approximately 30% of patients with systemic lupus erythematosus (SLE) contain high titers of autoantibodies that bind to the 52-kDa Ro/SSA protein. We previously detected polymorphisms in the 52-kDa Ro/SSA gene (SSA1) with restriction enzymes, one of which is strongly associated with the presence of SLE (P < 0.0005) in African Americans. A higher disease frequency and more severe forms of the disease are commonly noted among these female patients. To determine the location and nature of this polymorphism, we obtained two clones that span 8.5 kb of the 52-kDa Ro/SSA locus including its upstream regulatory region. Six exonsmore » were identified, and their nucleotide sequences plus adjacent noncoding regions were determined. No differences were found between these exons and the coding region of one of the reported cDNAs. The disease-associated polymorphic site suggested by a restriction enzyme map and confirmed by DNA amplification and nucleotide sequencing was present upstream of exon 1. This polymorphism may be a genetic marker for a disease-related variation in the coding region for the protein or in the upstream regulatory region of this gene. Although this RFLP is present in Japanese, it is not associated with lupus in this race. 41 refs., 4 figs., 2 tabs.« less

Cloning and expression of a cDNA coding for catalase from zebrafish (Danio rerio).

PubMed

Ken, C F; Lin, C T; Wu, J L; Shaw, J F

2000-06-01

A full-length complementary DNA (cDNA) clone encoding a catalase was amplified by the rapid amplication of cDNA ends-polymerase chain reaction (RACE-PCR) technique from zebrafish (Danio rerio) mRNA. Nucleotide sequence analysis of this cDNA clone revealed that it comprised a complete open reading frame coding for 526 amino acid residues and that it had a molecular mass of 59 654 Da. The deduced amino acid sequence showed high similarity with the sequences of catalase from swine (86.9%), mouse (85.8%), rat (85%), human (83.7%), fruit fly (75.6%), nematode (71.1%), and yeast (58.6%). The amino acid residues for secondary structures are apparently conserved as they are present in other mammal species. Furthermore, the coding region of zebrafish catalase was introduced into an expression vector, pET-20b(+), and transformed into Escherichia coli expression host BL21(DE3)pLysS. A 60-kDa active catalase protein was expressed and detected by Coomassie blue staining as well as activity staining on polyacrylamide gel followed electrophoresis.

The rare DAT coding variant Val559 perturbs DA neuron function, changes behavior, and alters in vivo responses to psychostimulants.

PubMed

Mergy, Marc A; Gowrishankar, Raajaram; Gresch, Paul J; Gantz, Stephanie C; Williams, John; Davis, Gwynne L; Wheeler, C Austin; Stanwood, Gregg D; Hahn, Maureen K; Blakely, Randy D

2014-11-04

Despite the critical role of the presynaptic dopamine (DA) transporter (DAT, SLC6A3) in DA clearance and psychostimulant responses, evidence that DAT dysfunction supports risk for mental illness is indirect. Recently, we identified a rare, nonsynonymous Slc6a3 variant that produces the DAT substitution Ala559Val in two male siblings who share a diagnosis of attention-deficit hyperactivity disorder (ADHD), with other studies identifying the variant in subjects with bipolar disorder (BPD) and autism spectrum disorder (ASD). Previously, using transfected cell studies, we observed that although DAT Val559 displays normal total and surface DAT protein levels, and normal DA recognition and uptake, the variant transporter exhibits anomalous DA efflux (ADE) and lacks capacity for amphetamine (AMPH)-stimulated DA release. To pursue the significance of these findings in vivo, we engineered DAT Val559 knock-in mice, and here we demonstrate in this model the presence of elevated extracellular DA levels, altered somatodendritic and presynaptic D2 DA receptor (D2R) function, a blunted ability of DA terminals to support depolarization and AMPH-evoked DA release, and disruptions in basal and psychostimulant-evoked locomotor behavior. Together, our studies demonstrate an in vivo functional impact of the DAT Val559 variant, providing support for the ability of DAT dysfunction to impact risk for mental illness.

The rare DAT coding variant Val559 perturbs DA neuron function, changes behavior, and alters in vivo responses to psychostimulants

PubMed Central

Mergy, Marc A.; Gowrishankar, Raajaram; Gresch, Paul J.; Gantz, Stephanie C.; Williams, John; Davis, Gwynne L.; Wheeler, C. Austin; Stanwood, Gregg D.; Hahn, Maureen K.; Blakely, Randy D.

2014-01-01

Despite the critical role of the presynaptic dopamine (DA) transporter (DAT, SLC6A3) in DA clearance and psychostimulant responses, evidence that DAT dysfunction supports risk for mental illness is indirect. Recently, we identified a rare, nonsynonymous Slc6a3 variant that produces the DAT substitution Ala559Val in two male siblings who share a diagnosis of attention-deficit hyperactivity disorder (ADHD), with other studies identifying the variant in subjects with bipolar disorder (BPD) and autism spectrum disorder (ASD). Previously, using transfected cell studies, we observed that although DAT Val559 displays normal total and surface DAT protein levels, and normal DA recognition and uptake, the variant transporter exhibits anomalous DA efflux (ADE) and lacks capacity for amphetamine (AMPH)-stimulated DA release. To pursue the significance of these findings in vivo, we engineered DAT Val559 knock-in mice, and here we demonstrate in this model the presence of elevated extracellular DA levels, altered somatodendritic and presynaptic D2 DA receptor (D2R) function, a blunted ability of DA terminals to support depolarization and AMPH-evoked DA release, and disruptions in basal and psychostimulant-evoked locomotor behavior. Together, our studies demonstrate an in vivo functional impact of the DAT Val559 variant, providing support for the ability of DAT dysfunction to impact risk for mental illness. PMID:25331903

The role of semantically related distractors during encoding and retrieval of words in long-term memory.

PubMed

Meade, Melissa E; Fernandes, Myra A

2016-07-01

We examined the influence of divided attention (DA) on recognition of words when the concurrent task was semantically related or unrelated to the to-be-recognised target words. Participants were asked to either study or retrieve a target list of semantically related words while simultaneously making semantic decisions (i.e., size judgements) to another set of related or unrelated words heard concurrently. We manipulated semantic relatedness of distractor to target words, and whether DA occurred during the encoding or retrieval phase of memory. Recognition accuracy was significantly diminished relative to full attention, following DA conditions at encoding, regardless of relatedness of distractors to study words. However, response times (RTs) were slower with related compared to unrelated distractors. Similarly, under DA at retrieval, recognition RTs were slower when distractors were semantically related than unrelated to target words. Unlike the effect from DA at encoding, recognition accuracy was worse under DA at retrieval when the distractors were related compared to unrelated to the target words. Results suggest that availability of general attentional resources is critical for successful encoding, whereas successful retrieval is particularly reliant on access to a semantic code, making it sensitive to related distractors under DA conditions.

Explaining the disease phenotype of intergenic SNP through predicted long range regulation.

PubMed

Chen, Jingqi; Tian, Weidong

2016-10-14

Thousands of disease-associated SNPs (daSNPs) are located in intergenic regions (IGR), making it difficult to understand their association with disease phenotypes. Recent analysis found that non-coding daSNPs were frequently located in or approximate to regulatory elements, inspiring us to try to explain the disease phenotypes of IGR daSNPs through nearby regulatory sequences. Hence, after locating the nearest distal regulatory element (DRE) to a given IGR daSNP, we applied a computational method named INTREPID to predict the target genes regulated by the DRE, and then investigated their functional relevance to the IGR daSNP's disease phenotypes. 36.8% of all IGR daSNP-disease phenotype associations investigated were possibly explainable through the predicted target genes, which were enriched with, were functionally relevant to, or consisted of the corresponding disease genes. This proportion could be further increased to 60.5% if the LD SNPs of daSNPs were also considered. Furthermore, the predicted SNP-target gene pairs were enriched with known eQTL/mQTL SNP-gene relationships. Overall, it's likely that IGR daSNPs may contribute to disease phenotypes by interfering with the regulatory function of their nearby DREs and causing abnormal expression of disease genes. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

NADH:ubiquinone oxidoreductase from bovine heart mitochondria. cDNA sequences of the import precursors of the nuclear-encoded 39 kDa and 42 kDa subunits.

PubMed Central

Fearnley, I M; Finel, M; Skehel, J M; Walker, J E

1991-01-01

The 39 kDa and 42 kDa subunits of NADH:ubiquinone oxidoreductase from bovine heart mitochondria are nuclear-coded components of the hydrophobic protein fraction of the enzyme. Their amino acid sequences have been deduced from the sequences of overlapping cDNA clones. These clones were amplified from total bovine heart cDNA by means of the polymerase chain reaction, with the use of complex mixtures of oligonucleotide primers based upon fragments of protein sequence determined at the N-terminals of the proteins and at internal sites. The protein sequences of the 39 kDa and 42 kDa subunits are 345 and 320 amino acid residues long respectively, and their calculated molecular masses are 39,115 Da and 36,693 Da. Both proteins are predominantly hydrophilic, but each contains one or two hydrophobic segments that could possibly be folded into transmembrane alpha-helices. The bovine 39 kDa protein sequence is related to that of a 40 kDa subunit from complex I from Neurospora crassa mitochondria; otherwise, it is not related significantly to any known sequence, including redox proteins and two polypeptides involved in import of proteins into mitochondria, known as the mitochondrial processing peptidase and the processing-enhancing protein. Therefore the functions of the 39 kDa and 42 kDa subunits of complex I are unknown. The mitochondrial gene product, ND4, a hydrophobic component of complex I with an apparent molecular mass of about 39 kDa, has been identified in preparations of the enzyme. This subunit stains faintly with Coomassie Blue dye, and in many gel systems it is not resolved from the nuclearcoded 36 kDa subunit. Images Fig. 1. PMID:1832859

Age, period and cohort trends in drug abuse hospitalizations within the total Swedish population (1975-2010)*

PubMed Central

Giordano, Giuseppe N.; Ohlsson, Henrik; Kendler, Kenneth S.; Winkleby, Marilyn A.; Sundquist, Kristina; Sundquist, Jan

2014-01-01

Background: The societal consequences of drug abuse (DA) are severe and well documented, the World Health Organization recommending tracking of population trends for effective policy responses in treatment of DA and delivery of health care services. However, to correctly identify possible sources of DA change, one must first disentangle three different time-related influences on the need for treatment due to DA: age effects, period effects and cohort effects. Methods: We constructed our main Swedish national DA database (spanning four decades) by linking healthcare data from the Swedish Hospital Discharge Register to individuals, which included hospitalisations in Sweden for 1975-2010. All hospitalized DA cases were identified by ICD codes. Our Swedish national sample consisted of 3,078,129 men and 2,921,816 women. We employed a cross-classified multilevel logistic regression model to disentangle any net age, period and cohort effects on DA hospitalization rates. Results: We found distinct net age, period and cohort effects, each influencing the predicted probability ofhospitalisation for DA in men and women. Peak age for DA in both sexes was 33-35 years; net period effects showed an increase in hospitalisation for DA from 1996 to 2001; and in birth cohorts 1968-74, we saw a considerable reduction (around 75%) in predicted probability of hospitalisation for DA. Conclusions: The use of hospital admissions could be regarded as a proxy of the population's health service use for DA. Our results may thus constitute a basis for effective prevention planning, treatment and other appropriate policy responses. PMID:24300899

Research on lossless compression of true color RGB image with low time and space complexity

NASA Astrophysics Data System (ADS)

Pan, ShuLin; Xie, ChengJun; Xu, Lin

2008-12-01

Eliminating correlated redundancy of space and energy by using a DWT lifting scheme and reducing the complexity of the image by using an algebraic transform among the RGB components. An improved Rice Coding algorithm, in which presents an enumerating DWT lifting scheme that fits any size images by image renormalization has been proposed in this paper. This algorithm has a coding and decoding process without backtracking for dealing with the pixels of an image. It support LOCO-I and it can also be applied to Coder / Decoder. Simulation analysis indicates that the proposed method can achieve a high image compression. Compare with Lossless-JPG, PNG(Microsoft), PNG(Rene), PNG(Photoshop), PNG(Anix PicViewer), PNG(ACDSee), PNG(Ulead photo Explorer), JPEG2000, PNG(KoDa Inc), SPIHT and JPEG-LS, the lossless image compression ratio improved 45%, 29%, 25%, 21%, 19%, 17%, 16%, 15%, 11%, 10.5%, 10% separately with 24 pieces of RGB image provided by KoDa Inc. Accessing the main memory in Pentium IV,CPU2.20GHZ and 256MRAM, the coding speed of the proposed coder can be increased about 21 times than the SPIHT and the efficiency of the performance can be increased 166% or so, the decoder's coding speed can be increased about 17 times than the SPIHT and the efficiency of the performance can be increased 128% or so.

Olfactory bulb short axon cell release of GABA and dopamine produces a temporally biphasic inhibition-excitation response in external tufted cells.

PubMed

Liu, Shaolin; Plachez, Celine; Shao, Zuoyi; Puche, Adam; Shipley, Michael T

2013-02-13

Evidence for coexpression of two or more classic neurotransmitters in neurons has increased, but less is known about cotransmission. Ventral tegmental area (VTA) neurons corelease dopamine (DA), the excitatory transmitter glutamate, and the inhibitory transmitter GABA onto target cells in the striatum. Olfactory bulb (OB) short axon cells (SACs) form interglomerular connections and coexpress markers for DA and GABA. Using an optogenetic approach, we provide evidence that mouse OB SACs release both GABA and DA onto external tufted cells (ETCs) in other glomeruli. Optical activation of channelrhodopsin specifically expressed in DAergic SACs produced a GABA(A) receptor-mediated monosynaptic inhibitory response, followed by DA-D(1)-like receptor-mediated excitatory response in ETCs. The GABA(A) receptor-mediated hyperpolarization activates I(h) current in ETCs; synaptically released DA increases I(h), which enhances postinhibitory rebound spiking. Thus, the opposing actions of synaptically released GABA and DA are functionally integrated by I(h) to generate an inhibition-to-excitation "switch" in ETCs. Consistent with the established role of I(h) in ETC burst firing, we show that endogenous DA release increases ETC spontaneous bursting frequency. ETCs transmit sensory signals to mitral/tufted output neurons and drive intraglomerular inhibition to shape glomerulus output to downstream olfactory networks. GABA and DA cotransmission from SACs to ETCs may play a key role in regulating output coding across the glomerular array.

Model of Dredging Impact on Dungeness Crab in Grays Harbor, Washington

DTIC Science & Technology

1987-06-01

Washington. 43 pp. Barry, Steve. 1986. Personal communication . Washington Dept. of Fisheries , Montesano, Washington. Bella, D.A. and K.J. Williamson. 1980... FISHERIES 18SHERIES RESEARCH INSTITUTE *~~ ~~~~~~~ Z *;r. .’."*,* U.-~0 SECURITY CLASSIFICATION OF THIS PAGE REPORT DOCUMENTATION PAGE Form Approved...School of Fisheries U.S.Ary Corps of Engineers, Seattle District 6c. ADDRESS (Cty, State, and ZIP Code) 7b. ADDRESS (City, State, and ZIP Code

Slow Decomposition of Silicone Rubber.

DTIC Science & Technology

1982-09-01

6i 0 20 0 0 -c CA soa ,~ I -- 00 N - C,,l I 21. DYN 6181 DISTRIBUTION LIST No. Cooies No. Cooies Dr. L.V. Schmidt 1 Or. F. Roberto 1 Assistant...Scientific Dr. A.L. Slafkosky 1 Research Scientific Advisor Directorate of Aerosoace Sciences Commandant of the Marine Corps Bolling Air Force Base Code...Research Research Code 413 Directorate of Chemical Sciences Arlington, VA 22217 Bolling Air Force Base Washington, D.C. 20332 M r . Da v id S i e g e lD r J

Two-step processing for activation of the cytolysin/hemolysin of Vibrio cholerae O1 biotype El Tor: nucleotide sequence of the structural gene (hlyA) and characterization of the processed products.

PubMed

Yamamoto, K; Ichinose, Y; Shinagawa, H; Makino, K; Nakata, A; Iwanaga, M; Honda, T; Miwatani, T

1990-12-01

Vibrio cholerae O1 biotype El Tor produces and secretes a 65-kDa cytolysin/hemolysin into the culture medium. We cloned the structural gene (hlyA) for the cytolysin from the total DNA of a V. cholerae O1 El Tor strain, N86. Nucleotide sequence analysis of hlyA revealed an open reading frame consisting of 2,223 bp which can code for a protein of 741 amino acids with a molecular weight of 81,961. Consistent with this, a 79-kDa protein was identified as the product of hlyA by maxicell analysis in Escherichia coli. N-terminal amino acids of this 79-kDa HlyA protein and those of a 65-kDa El Tor cytolysin purified from V. cholerae were Asn-26 and Asn-158, respectively. The 82- and 79-kDa precursors of the 65-kDa mature cytolysin were found in V. cholerae by pulse-chase labeling and Western blot (immunoblot) analysis of hlyA products. Hemolytic activity of the 79-kDa HlyA protein from E. coli was less than 5% that for the 65-kDa cytolysin from V. cholerae. Our results suggest that in V. cholerae, the 82-kDa preprotoxin synthesized in the cytoplasm is secreted through the membranes into the culture medium as the 79-kDa inactive protoxin after cleavage of the signal peptide and is then further processed into the 65-kDa active cytolysin by release of the N-terminal 15-kDa fragment.

Error suppression and correction for quantum annealing

NASA Astrophysics Data System (ADS)

Lidar, Daniel

While adiabatic quantum computing and quantum annealing enjoy a certain degree of inherent robustness against excitations and control errors, there is no escaping the need for error correction or suppression. In this talk I will give an overview of our work on the development of such error correction and suppression methods. We have experimentally tested one such method combining encoding, energy penalties and decoding, on a D-Wave Two processor, with encouraging results. Mean field theory shows that this can be explained in terms of a softening of the closing of the gap due to the energy penalty, resulting in protection against excitations that occur near the quantum critical point. Decoding recovers population from excited states and enhances the success probability of quantum annealing. Moreover, we have demonstrated that using repetition codes with increasing code distance can lower the effective temperature of the annealer. References: K.L. Pudenz, T. Albash, D.A. Lidar, ``Error corrected quantum annealing with hundreds of qubits'', Nature Commun. 5, 3243 (2014). K.L. Pudenz, T. Albash, D.A. Lidar, ``Quantum annealing correction for random Ising problems'', Phys. Rev. A. 91, 042302 (2015). S. Matsuura, H. Nishimori, T. Albash, D.A. Lidar, ``Mean Field Analysis of Quantum Annealing Correction''. arXiv:1510.07709. W. Vinci et al., in preparation.

Characterization of the Aspergillus nidulans aspnd1 gene demonstrates that the ASPND1 antigen, which it encodes, and several Aspergillus fumigatus immunodominant antigens belong to the same family.

PubMed Central

Calera, J A; Ovejero, M C; López-Medrano, R; Segurado, M; Puente, P; Leal, F

1997-01-01

For the first time, an immunodominant Aspergillus nidulans antigen (ASPND1) consistently reactive with serum samples from aspergilloma patients has been purified and characterized, and its coding gene (aspnd1) has been cloned and sequenced. ASPND1 is a glycoprotein with four N-glycosidically-bound sugar chains (around 2.1 kDa each) which are not necessary for reactivity with immune human sera. The polypeptide part is synthesized as a 277-amino-acid precursor of 30.6 kDa that after cleavage of a putative signal peptide of 16 amino acids, affords a mature protein of 261 amino acids with a molecular mass of 29 kDa and a pI of 4.24 (as deduced from the sequence). The ASPND1 protein is 53.1% identical to the AspfII allergen from Aspergillus fumigatus and 48% identical to an unpublished Candida albicans antigen. All of the cysteine residues and most of the glycosylation sites are perfectly conserved in the three proteins, suggesting a similar but yet unknown function. Analysis of the primary structure of the ASPND1 coding gene (aspnd1) has allowed the establishment of a clear relationship between several previously reported A. fumigatus and A. nidulans immunodominant antigens. PMID:9119471

An Alternate Method to Springback Compensation for Sheet Metal Forming

PubMed Central

Omar, Badrul; Jusoff, Kamaruzaman

2014-01-01

The aim of this work is to improve the accuracy of cold stamping product by accommodating springback. This is a numerical approach to improve the accuracy of springback analysis and die compensation process combining the displacement adjustment (DA) method and the spring forward (SF) algorithm. This alternate hybrid method (HM) is conducted by firstly employing DA method followed by the SF method instead of either DA or SF method individually. The springback shape and the target part are used to optimize the die surfaces compensating springback. The hybrid method (HM) algorithm has been coded in Fortran and tested in two- and three-dimensional models. By implementing the HM, the springback error can be decreased and the dimensional deviation falls in the predefined tolerance range. PMID:25165738

A Potato cDNA Encoding a Homologue of Mammalian Multidrug Resistant P-Glycoprotein

NASA Technical Reports Server (NTRS)

Wang, W.; Takezawa, D.; Poovaiah, B. W.

1996-01-01

A homologue of the multidrug resistance (MDR) gene was obtained while screening a potato stolon tip cDNA expression library with S-15-labeled calmodulin. The mammalian MDR gene codes for a membrane-bound P-glycoprotein (170-180 kDa) which imparts multidrug resistance to cancerous cells. The potato cDNA (PMDR1) codes for a polypeptide of 1313 amino acid residues (ca. 144 kDa) and its structural features are very similar to the MDR P-glycoprotein. The N-terminal half of the PMDR1-encoded protein shares striking homology with its C-terminal half, and each half contains a conserved ATP-binding site and six putative transmembrane domains. Southern blot analysis indicated that potato has one or two MDR-like genes. PMDR1 mRNA is constitutively expressed in all organs studied with higher expression in the stem and stolon tip. The PMDR1 expression was highest during tuber initiation and decreased during tuber development.

Computing partial traces and reduced density matrices

NASA Astrophysics Data System (ADS)

Maziero, Jonas

Taking partial traces (PTrs) for computing reduced density matrices, or related functions, is a ubiquitous procedure in the quantum mechanics of composite systems. In this paper, we present a thorough description of this function and analyze the number of elementary operations (ops) needed, under some possible alternative implementations, to compute it on a classical computer. As we note, it is worthwhile doing some analytical developments in order to avoid making null multiplications and sums, what can considerably reduce the ops. For instance, for a bipartite system ℋa⊗ℋb with dimensions da=dimℋa and db=dimℋb and for da,db≫1, while a direct use of PTr definition applied to ℋb requires 𝒪(da6db6) ops, its optimized implementation entails 𝒪(da2db) ops. In the sequence, we regard the computation of PTrs for general multipartite systems and describe Fortran code provided to implement it numerically. We also consider the calculation of reduced density matrices via Bloch’s parametrization with generalized Gell Mann’s matrices.

Purification of nitrate reductase from Nicotiana plumbaginifolia by affinity chromatography using 5'AMP-sepharose and monoclonal antibodies.

PubMed

Moureaux, T; Leydecker, M T; Meyer, C

1989-02-15

Nitrate reductase was purified from leaves of Nicotiana plumbaginifolia using either 5'AMP-Sepharose chromatography or two steps of immunoaffinity chromatography involving monoclonal antibodies directed against nitrate reductase from maize and against ribulose-1,5-bisphosphate carboxylase from N. plumbaginifolia. Nitrate reductase obtained by the first method was purified 1000-fold to a specific activity of 9 units/mg protein. The second method produced an homogenous enzyme, purified 21,000-fold to a specific activity of 80 units/mg protein. SDS/PAGE of nitrate reductase always resulted in two bands of 107 and 99.5 kDa. The 107-kDa band was the nitrate reductase subunit of N. plumbaginifolia; the smaller one of 99.5 kDa is thought, as commonly reported, to result from proteolysis of the larger protein. The molecular mass of 107 kDa is close to the values calculated from the coding sequences of the two nitrate reductase genes recently cloned from tobacco (Nicotiana tabacum cv Xanthi).

Olfactory bulb short axon cell release of GABA and dopamine produces a temporally biphasic inhibition-excitation response in external tufted cells

PubMed Central

Liu, Shaolin; Plachez, Celine; Shao, Zuoyi; Puche, Adam; Shipley, Michael T.

2013-01-01

Evidence for co-expression of two or more classic neurotransmitters in neurons has increased but less is known about co-transmission. Ventral tegmental area (VTA) neurons, co-release dopamine (DA), the excitatory transmitter glutamate and the inhibitory transmitter GABA onto target cells in the striatum. Olfactory bulb (OB) short axon cells (SACs) form interglomerular connections and co-express markers for dopamine (DA) and GABA. Using an optogenetic approach we provide evidence that mouse OB SACs release both GABA and DA onto external tufted cells (ETCs) in other glomeruli. Optical activation of channelrhodopsin specifically expressed in DAergic SACs produced a GABAA receptor-mediated monosynaptic inhibitory response followed by DA-D1-like receptor-mediated excitatory response in ETCs. The GABAA receptor-mediated hyperpolarization activates Ih current in ETCs; synaptically released DA increases Ih, which enhances post-inhibitory rebound spiking. Thus, the opposing actions of synaptically released GABA and DA are functionally integrated by Ih to generate an inhibition-to-excitation “switch” in ETCs. Consistent with the established role of Ih in ETC burst firing, we show that endogenous DA release increases ETC spontaneous bursting frequency. ETCs transmit sensory signals to mitral/tufted output neurons and drive intraglomerular inhibition to shape glomerulus output to downstream olfactory networks. GABA and DA co-transmission from SACs to ETCs may play a key role in regulating output coding across the glomerular array. PMID:23407950

Novel coding, translation, and gene expression of a replicating covalently closed circular RNA of 220 nt.

PubMed

AbouHaidar, Mounir Georges; Venkataraman, Srividhya; Golshani, Ashkan; Liu, Bolin; Ahmad, Tauqeer

2014-10-07

The highly structured (64% GC) covalently closed circular (CCC) RNA (220 nt) of the virusoid associated with rice yellow mottle virus codes for a 16-kDa highly basic protein using novel modalities for coding, translation, and gene expression. This CCC RNA is the smallest among all known viroids and virusoids and the only one that codes proteins. Its sequence possesses an internal ribosome entry site and is directly translated through two (or three) completely overlapping ORFs (shifting to a new reading frame at the end of each round). The initiation and termination codons overlap UGAUGA (underline highlights the initiation codon AUG within the combined initiation-termination sequence). Termination codons can be ignored to obtain larger read-through proteins. This circular RNA with no noncoding sequences is a unique natural supercompact "nanogenome."

Turkish scorpion Buthacus macrocentrus: general characterization of the venom and description of Bu1, a potent mammalian Na⁺-channel α-toxin.

PubMed

Caliskan, F; Quintero-Hernández, V; Restano-Cassulini, R; Batista, C V F; Zamudio, F Z; Coronas, F I; Possani, L D

2012-03-01

The venom of the scorpion Buthacus macrocentrus of Turkey was fractionated by high performance liquid chromatography (HPLC) and its mass finger print analysis was obtained by spectrometry. More than 70 different fractions were obtained, allowing the determination of the molecular masses of at least 60 peptides ranging between 648 and 44,336 Da. The venom is enriched with peptides containing molecular masses between 3200-4500 Da, and 6000-7500 Da. They very likely correspond to K⁺-channel and Na⁺-channel specific peptides, respectively, as expected from venoms of scorpions of the family Buthidae, already determined for other species. The major component obtained from HPLC was shown to be lethal to mice and was further purified and characterized. It contains 65 amino acid residues maintained closely packed by 4 disulfide bridges, and shows a molecular weight of 7263 Da. Additionally, a cDNA from the venomous glands of this scorpion was used in conjunction with sequence data from Edman degradation and mass spectrometry for cloning the gene that codes for Bu1 as we named this toxin. This gene codes for a 67 amino acid residues peptide, where the two last are eliminated post-translationally for production of an amidated C-terminal arginine. Its sequence is closely related to toxins from the species Leiurus quinquestriatus, as revealed by a phylogenetic tree analysis. Electrophysiological results conducted with Bu1 using patch-clamp techniques indicate that it modifies the Na⁺ currents, in a similar way as other well known α-scorpion toxins. These results support the conclusion that this species of scorpions is dangerous to humans, having an epidemiological interest for the country. Copyright © 2012 Elsevier Ltd. All rights reserved.

ADHD-Derived Coding Variation in the Dopamine Transporter Disrupts Microdomain Targeting and Trafficking Regulation

PubMed Central

Sakrikar, Dhananjay; Mazei-Robison, Michelle S.; Mergy, Marc A.; Richtand, Nathan W.; Han, Qiao; Hamilton, Peter J.; Bowton, Erica; Galli, Aurelio; Veenstra-VanderWeele, Jeremy; Gill, Michael; Blakely, Randy D.

2012-01-01

Attention-Deficit Hyperactivity Disorder (ADHD) is the most commonly diagnosed disorder of school-age children. Although genetic and brain imaging studies suggest a contribution of altered dopamine (DA) signaling in ADHD, evidence of signaling perturbations contributing to risk is largely circumstantial. The presynaptic, cocaine and amphetamine (AMPH)-sensitive DA transporter (DAT) constrains DA availability at pre- and post-synaptic receptors following vesicular release and is targeted by the most commonly prescribed ADHD therapeutics. Using polymorphism discovery approaches with an ADHD cohort, we identified a human DAT (hDAT) coding variant, R615C, located in the transporter’s distal C-terminus, a region previously implicated in constitutive and regulated transporter trafficking. Here we demonstrate that whereas wildtype DAT proteins traffic in a highly regulated manner, DAT 615C proteins recycle constitutively, and demonstrate insensitivity to the endocytic effects of AMPH and protein kinase C (PKC) activation. The disrupted regulation of DAT 615C parallels a redistribution of the transporter variant away from GM1 ganglioside- and flotillin1-enriched membranes, and is accompanied by altered calcium/calmodulin-dependent protein kinase II (CaMKII) and flotillin-1 interactions. Using C-terminal peptides derived from wildtype DAT and the R615C variant, we establish that the DAT 615C C-terminus can act dominantly to preclude AMPH regulation of wildtype DAT. Mutagenesis of DAT C-terminal sequences suggest that phosphorylation of T613 may be important in sorting DAT between constitutive and regulated pathways. Together, our studies support a coupling of DAT microdomain localization with transporter regulation and provide evidence of perturbed DAT activity and DA signaling as a risk determinant for ADHD. PMID:22514303

Neutron-encoded Signatures Enable Product Ion Annotation From Tandem Mass Spectra*

PubMed Central

Richards, Alicia L.; Vincent, Catherine E.; Guthals, Adrian; Rose, Christopher M.; Westphall, Michael S.; Bandeira, Nuno; Coon, Joshua J.

2013-01-01

We report the use of neutron-encoded (NeuCode) stable isotope labeling of amino acids in cell culture for the purpose of C-terminal product ion annotation. Two NeuCode labeling isotopologues of lysine, 13C615N2 and 2H8, which differ by 36 mDa, were metabolically embedded in a sample proteome, and the resultant labeled proteins were combined, digested, and analyzed via liquid chromatography and mass spectrometry. With MS/MS scan resolving powers of ∼50,000 or higher, product ions containing the C terminus (i.e. lysine) appear as a doublet spaced by exactly 36 mDa, whereas N-terminal fragments exist as a single m/z peak. Through theory and experiment, we demonstrate that over 90% of all y-type product ions have detectable doublets. We report on an algorithm that can extract these neutron signatures with high sensitivity and specificity. In other words, of 15,503 y-type product ion peaks, the y-type ion identification algorithm correctly identified 14,552 (93.2%) based on detection of the NeuCode doublet; 6.8% were misclassified (i.e. other ion types that were assigned as y-type products). Searching NeuCode labeled yeast with PepNovo+ resulted in a 34% increase in correct de novo identifications relative to searching through MS/MS only. We use this tool to simplify spectra prior to database searching, to sort unmatched tandem mass spectra for spectral richness, for correlation of co-fragmented ions to their parent precursor, and for de novo sequence identification. PMID:24043425

Cyclic AMP regulates the biosynthesis of cellobiohydrolase in Cellulomonas flavigena growing in sugar cane bagasse.

PubMed

Herrera-Herrera, Jesús Antonio; Pérez-Avalos, Odilia; Salgado, Luis M; Ponce-Noyola, Teresa

2009-10-01

Cellulomonas flavigena produces a battery of cellulase components that act concertedly to degrade cellulose. The addition of cAMP to repressed C. flavigena cultures released catabolic repression, while addition of cAMP to induced C. flavigena cultures led to a cellobiohydrolase hyperproduction. Exogenous cAMP showed positive regulation on cellobiohydrolase production in C. flavigena grown on sugar cane bagasse. A C. flavigena cellobiohydrolase gene was cloned (named celA), which coded for a 71- kDa enzyme. Upstream, a repressor celR1, identified as a 38 kDa protein, was monitored by use of polyclonal antibodies.

Novel coding, translation, and gene expression of a replicating covalently closed circular RNA of 220 nt

PubMed Central

AbouHaidar, Mounir Georges; Venkataraman, Srividhya; Golshani, Ashkan; Liu, Bolin; Ahmad, Tauqeer

2014-01-01

The highly structured (64% GC) covalently closed circular (CCC) RNA (220 nt) of the virusoid associated with rice yellow mottle virus codes for a 16-kDa highly basic protein using novel modalities for coding, translation, and gene expression. This CCC RNA is the smallest among all known viroids and virusoids and the only one that codes proteins. Its sequence possesses an internal ribosome entry site and is directly translated through two (or three) completely overlapping ORFs (shifting to a new reading frame at the end of each round). The initiation and termination codons overlap UGAUGA (underline highlights the initiation codon AUG within the combined initiation-termination sequence). Termination codons can be ignored to obtain larger read-through proteins. This circular RNA with no noncoding sequences is a unique natural supercompact “nanogenome.” PMID:25253891

Bombyx mori nucleopolyhedrovirus orf25 encodes a 30kDa late protein in the infection cycle.

PubMed

Wang, Haiyan; Chen, Keping; Guo, Zhongjian; Yao, Qin

2008-02-01

Bombyx mori nucleopolyhedrovirus (BmNPV) orf25 gene was characterized for the first time. The coding sequence of Bm25 was amplified and subcloned into the prokaryotic expression vector pGEX-4T-2 to produce glutathione S-transferase-tagged fusion protein in the BL21 (DE3) cells. The GST-Bm25 fusion protein was expressed efficiently after induction with IPTG. The purified fusion protein was used to immunize New Zealand white rabbits to prepare polyclonal antibody. Temporal expression analysis revealed a 30-kDa protein, which was detected beginning 24 hours post-infection using a polyclonal antibody against GST-Bm25 fusion protein. The transcript of Bm25 was detected by RT-PCR at 18-72 h p.i. In conclusion, the available data suggest that Bm25 encodes a 30kDa protein expressed in the late stage of infection cycle.

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-11

DOT National Transportation Integrated Search

2013-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-07

DOT National Transportation Integrated Search

2013-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-09

DOT National Transportation Integrated Search

2013-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-08

DOT National Transportation Integrated Search

2013-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-11

DOT National Transportation Integrated Search

2012-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-04

DOT National Transportation Integrated Search

2012-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-08

DOT National Transportation Integrated Search

2012-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-04

DOT National Transportation Integrated Search

2013-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-12

DOT National Transportation Integrated Search

2012-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-12

DOT National Transportation Integrated Search

2009-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-06

DOT National Transportation Integrated Search

2012-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-09

DOT National Transportation Integrated Search

2012-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-03

DOT National Transportation Integrated Search

2013-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-07

DOT National Transportation Integrated Search

2012-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-10

DOT National Transportation Integrated Search

2013-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-10

DOT National Transportation Integrated Search

2012-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-01

DOT National Transportation Integrated Search

2013-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-12

DOT National Transportation Integrated Search

2013-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-02

DOT National Transportation Integrated Search

2013-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-05

DOT National Transportation Integrated Search

2013-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-06

DOT National Transportation Integrated Search

2013-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

SSDA code to apply data assimilation in soil water flow modeling: Documentation and user manual

USDA-ARS?s Scientific Manuscript database

Soil water flow models are based on simplified assumptions about the mechanisms, processes, and parameters of water retention and flow. That causes errors in soil water flow model predictions. Data assimilation (DA) with the ensemble Kalman filter (EnKF) corrects modeling results based on measured s...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - U.S. Air Carriers Traffic and Capacity Data.

DOT National Transportation Integrated Search

2010-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2014-01

DOT National Transportation Integrated Search

2014-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2014-02

DOT National Transportation Integrated Search

2014-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-02

DOT National Transportation Integrated Search

2011-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-06

DOT National Transportation Integrated Search

2010-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-04

DOT National Transportation Integrated Search

2010-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-09

DOT National Transportation Integrated Search

2010-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-09

DOT National Transportation Integrated Search

2010-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-01

DOT National Transportation Integrated Search

2010-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-11

DOT National Transportation Integrated Search

2010-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-05

DOT National Transportation Integrated Search

2010-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-08

DOT National Transportation Integrated Search

2010-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-05

DOT National Transportation Integrated Search

2010-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-01

DOT National Transportation Integrated Search

2011-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-07

DOT National Transportation Integrated Search

2010-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-02

DOT National Transportation Integrated Search

2011-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-07

DOT National Transportation Integrated Search

2010-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-12

DOT National Transportation Integrated Search

2010-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-03

DOT National Transportation Integrated Search

2012-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-03

DOT National Transportation Integrated Search

2011-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-11

DOT National Transportation Integrated Search

2009-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-10

DOT National Transportation Integrated Search

2011-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2014-03

DOT National Transportation Integrated Search

2014-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2014-04

DOT National Transportation Integrated Search

2014-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-11

DOT National Transportation Integrated Search

2012-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-02

DOT National Transportation Integrated Search

2013-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2014-02

DOT National Transportation Integrated Search

2014-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-03

DOT National Transportation Integrated Search

2013-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-10

DOT National Transportation Integrated Search

2009-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-09

DOT National Transportation Integrated Search

2012-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-07

DOT National Transportation Integrated Search

2012-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-12

DOT National Transportation Integrated Search

2012-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-01

DOT National Transportation Integrated Search

2013-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-09

DOT National Transportation Integrated Search

2009-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-05

DOT National Transportation Integrated Search

2012-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-11

DOT National Transportation Integrated Search

2011-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-08

DOT National Transportation Integrated Search

2012-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2014-05

DOT National Transportation Integrated Search

2014-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-04

DOT National Transportation Integrated Search

2013-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-11

DOT National Transportation Integrated Search

2009-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Using Program Theory-Driven Evaluation Science to Crack the Da Vinci Code

ERIC Educational Resources Information Center

Donaldson, Stewart I.

2005-01-01

Program theory-driven evaluation science uses substantive knowledge, as opposed to method proclivities, to guide program evaluations. It aspires to update, clarify, simplify, and make more accessible the evolving theory of evaluation practice commonly referred to as theory-driven or theory-based evaluation. The evaluator in this chapter provides a…

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-05

DOT National Transportation Integrated Search

2013-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-07

DOT National Transportation Integrated Search

2013-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-12

DOT National Transportation Integrated Search

2013-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-06

DOT National Transportation Integrated Search

2009-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-11

DOT National Transportation Integrated Search

2013-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-02

DOT National Transportation Integrated Search

2012-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-01

DOT National Transportation Integrated Search

2012-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-02

DOT National Transportation Integrated Search

2009-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-09

DOT National Transportation Integrated Search

2011-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2014-01

DOT National Transportation Integrated Search

2014-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-04

DOT National Transportation Integrated Search

2009-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-08

DOT National Transportation Integrated Search

2011-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-12

DOT National Transportation Integrated Search

2011-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-08

DOT National Transportation Integrated Search

2013-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-12

DOT National Transportation Integrated Search

2011-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-07

DOT National Transportation Integrated Search

2009-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-10

DOT National Transportation Integrated Search

2013-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2013-09

DOT National Transportation Integrated Search

2013-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2007-12

DOT National Transportation Integrated Search

2007-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2006-12

DOT National Transportation Integrated Search

2006-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2005-12

DOT National Transportation Integrated Search

2005-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2014-06

DOT National Transportation Integrated Search

2014-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2014-05

DOT National Transportation Integrated Search

2014-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2014-04

DOT National Transportation Integrated Search

2014-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-02

DOT National Transportation Integrated Search

2009-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-05

DOT National Transportation Integrated Search

2011-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-10

DOT National Transportation Integrated Search

2009-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-09

DOT National Transportation Integrated Search

2009-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-04

DOT National Transportation Integrated Search

2009-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-08

DOT National Transportation Integrated Search

2009-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2008-12

DOT National Transportation Integrated Search

2008-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-06

DOT National Transportation Integrated Search

2011-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-04

DOT National Transportation Integrated Search

2011-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-02

DOT National Transportation Integrated Search

2010-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-01

DOT National Transportation Integrated Search

2011-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-03

DOT National Transportation Integrated Search

2011-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-11

DOT National Transportation Integrated Search

2011-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-05

DOT National Transportation Integrated Search

2009-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-07

DOT National Transportation Integrated Search

2009-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2009-03

DOT National Transportation Integrated Search

2009-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-10

DOT National Transportation Integrated Search

2011-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-07

DOT National Transportation Integrated Search

2011-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-09

DOT National Transportation Integrated Search

2011-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2011-08

DOT National Transportation Integrated Search

2011-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-05

DOT National Transportation Integrated Search

2012-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DM - T-100 Domestic Market Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2012-02

DOT National Transportation Integrated Search

2012-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-08

DOT National Transportation Integrated Search

2010-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-01

DOT National Transportation Integrated Search

2010-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-04

DOT National Transportation Integrated Search

2010-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28DS - T-100 Domestic Segment Data (World Area Code) - US Air Carriers Traffic and Capacity Data : [2010-06

DOT National Transportation Integrated Search

2010-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Cloning, Expression, and Nucleotide Sequence of the Pseudomonas aeruginosa 142 ohb Genes Coding for Oxygenolytic ortho Dehalogenation of Halobenzoates

PubMed Central

Tsoi, Tamara V.; Plotnikova, Elena G.; Cole, James R.; Guerin, William F.; Bagdasarian, Michael; Tiedje, James M.

1999-01-01

We have cloned and characterized novel oxygenolytic ortho-dehalogenation (ohb) genes from 2-chlorobenzoate (2-CBA)- and 2,4-dichlorobenzoate (2,4-dCBA)-degrading Pseudomonas aeruginosa 142. Among 3,700 Escherichia coli recombinants, two clones, DH5αF′(pOD22) and DH5αF′(pOD33), converted 2-CBA to catechol and 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol. A subclone of pOD33, plasmid pE43, containing the 3,687-bp minimized ohb DNA region conferred to P. putida PB2440 the ability to grow on 2-CBA as a sole carbon source. Strain PB2440(pE43) also oxidized but did not grow on 2,4-dCBA, 2,5-dCBA, or 2,6-dCBA. Terminal oxidoreductase ISPOHB structural genes ohbA and ohbB, which encode polypeptides with molecular masses of 20,253 Da (β-ISP) and 48,243 Da (α-ISP), respectively, were identified; these proteins are in accord with the 22- and 48-kDa (as determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis) polypeptides synthesized in E. coli and P. aeruginosa parental strain 142. The ortho-halobenzoate 1,2-dioxygenase activity was manifested in the absence of ferredoxin and reductase genes, suggesting that the ISPOHB utilized electron transfer components provided by the heterologous hosts. ISPOHB formed a new phylogenetic cluster that includes aromatic oxygenases featuring atypical structural-functional organization and is distant from the other members of the family of primary aromatic oxygenases. A putative IclR-type regulatory gene (ohbR) was located upstream of the ohbAB genes. An open reading frame (ohbC) of unknown function that overlaps lengthwise with ohbB but is transcribed in the opposite direction was found. The ohbC gene codes for a 48,969-Da polypeptide, in accord with the 49-kDa protein detected in E. coli. The ohb genes are flanked by an IS1396-like sequence containing a putative gene for a 39,715-Da transposase A (tnpA) at positions 4731 to 5747 and a putative gene for a 45,247-Da DNA topoisomerase I/III (top) at positions 346 to 1563. The ohb DNA region is bordered by 14-bp imperfect inverted repeats at positions 56 to 69 and 5984 to 5997. PMID:10224014

Epigenetic dysregulation of the dopamine system in diet-induced obesity.

PubMed

Vucetic, Zivjena; Carlin, Jesse Lea; Totoki, Kathy; Reyes, Teresa M

2012-03-01

Chronic intake of high-fat (HF) diet is known to alter brain neurotransmitter systems that participate in the central regulation of food intake. Dopamine (DA) system changes in response to HF diet have been observed in the hypothalamus, important in the homeostatic control of food intake, as well as within the central reward circuitry [ventral tegmental area (VTA), nucleus accumbens (NAc), and pre-frontal cortex (PFC)], critical for coding the rewarding properties of palatable food and important in hedonically driven feeding behavior. Using a mouse model of diet-induced obesity (DIO), significant alterations in the expression of DA-related genes were documented in adult animals, and the general pattern of gene expression changes was opposite within the hypothalamus versus the reward circuitry (increased vs. decreased, respectively). Differential DNA methylation was identified within the promoter regions of tyrosine hydroxylase (TH) and dopamine transporter (DAT), and the pattern of this response was consistent with the pattern of gene expression. Behaviors consistent with increased hypothalamic DA and decreased reward circuitry DA were observed. These data identify differential DNA methylation as an epigenetic mechanism linking the chronic intake of HF diet with altered DA-related gene expression, and this response varies by brain region and DNA sequence. © 2012 The Authors. Journal of Neurochemistry © 2012 International Society for Neurochemistry.

The future of PanDA in ATLAS distributed computing

NASA Astrophysics Data System (ADS)

De, K.; Klimentov, A.; Maeno, T.; Nilsson, P.; Oleynik, D.; Panitkin, S.; Petrosyan, A.; Schovancova, J.; Vaniachine, A.; Wenaus, T.

2015-12-01

Experiments at the Large Hadron Collider (LHC) face unprecedented computing challenges. Heterogeneous resources are distributed worldwide at hundreds of sites, thousands of physicists analyse the data remotely, the volume of processed data is beyond the exabyte scale, while data processing requires more than a few billion hours of computing usage per year. The PanDA (Production and Distributed Analysis) system was developed to meet the scale and complexity of LHC distributed computing for the ATLAS experiment. In the process, the old batch job paradigm of locally managed computing in HEP was discarded in favour of a far more automated, flexible and scalable model. The success of PanDA in ATLAS is leading to widespread adoption and testing by other experiments. PanDA is the first exascale workload management system in HEP, already operating at more than a million computing jobs per day, and processing over an exabyte of data in 2013. There are many new challenges that PanDA will face in the near future, in addition to new challenges of scale, heterogeneity and increasing user base. PanDA will need to handle rapidly changing computing infrastructure, will require factorization of code for easier deployment, will need to incorporate additional information sources including network metrics in decision making, be able to control network circuits, handle dynamically sized workload processing, provide improved visualization, and face many other challenges. In this talk we will focus on the new features, planned or recently implemented, that are relevant to the next decade of distributed computing workload management using PanDA.

Mathematical Fiction for Senior Students and Undergraduates: Novels, Plays, and Film

ERIC Educational Resources Information Center

Padula, Janice

2006-01-01

Mathematical fiction has probably existed since ideas have been written down and certainly as early as 414 BC (Kasman, 2000). Mathematical fiction is a recently rediscovered and growing literature, as sales of the novels: "The Curious Incident of the Dog in the Night-time" (Haddon, 2003) and "The Da Vinci Code" (Brown, 2004) attest. Science…

Research suggests 'weekend effect' may be all in the coding. Available at.

PubMed

2016-06-10

'Looking at where we are now, you could only describe it as a shambles' Peter Rothwell as reported online in the Huffington Post (http://www.huffingtonpost.co.uk/entry/weekend-deaths-nhs-effect-flawed_uk_57305112e4b0e6da49a677c7 [Accessed 2 June 2016]).

76 FR 37684 - Airworthiness Directives; Diamond Aircraft Industries GmbH Model (Diamond) DA 40 Airplanes...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-28

... the airplane weight and balance. This proposed AD was prompted by reports of damage around the VCS... balance. Authority for This Rulemaking Title 49 of the United States Code specifies the FAA's authority to... weight and balance. Special Flight Permit (h) The compressor drive belt must be cut and removed before...

Rift Valley fever virus structural and non-structural proteins: Recombinant protein expression and immunoreactivity against antisera from sheep

USDA-ARS?s Scientific Manuscript database

The Rift Valley fever virus (RVFV) encodes structural proteins, nucleoprotein (N), N-terminus glycoprotein (Gn), C-terminus glycoprotein (Gc) and L protein, 78-kDa and non-structural proteins NSm and NSs. Using the baculovirus system we expressed the full-length coding sequence of N, NSs, NSm, Gc an...

Mobile, hybrid Compton/coded aperture imaging for detection, identification and localization of gamma-ray sources at stand-off distances

NASA Astrophysics Data System (ADS)

Tornga, Shawn R.

The Stand-off Radiation Detection System (SORDS) program is an Advanced Technology Demonstration (ATD) project through the Department of Homeland Security's Domestic Nuclear Detection Office (DNDO) with the goal of detection, identification and localization of weak radiological sources in the presence of large dynamic backgrounds. The Raytheon-SORDS Tri-Modal Imager (TMI) is a mobile truck-based, hybrid gamma-ray imaging system able to quickly detect, identify and localize, radiation sources at standoff distances through improved sensitivity while minimizing the false alarm rate. Reconstruction of gamma-ray sources is performed using a combination of two imaging modalities; coded aperture and Compton scatter imaging. The TMI consists of 35 sodium iodide (NaI) crystals 5x5x2 in3 each, arranged in a random coded aperture mask array (CA), followed by 30 position sensitive NaI bars each 24x2.5x3 in3 called the detection array (DA). The CA array acts as both a coded aperture mask and scattering detector for Compton events. The large-area DA array acts as a collection detector for both Compton scattered events and coded aperture events. In this thesis, developed coded aperture, Compton and hybrid imaging algorithms will be described along with their performance. It will be shown that multiple imaging modalities can be fused to improve detection sensitivity over a broader energy range than either alone. Since the TMI is a moving system, peripheral data, such as a Global Positioning System (GPS) and Inertial Navigation System (INS) must also be incorporated. A method of adapting static imaging algorithms to a moving platform has been developed. Also, algorithms were developed in parallel with detector hardware, through the use of extensive simulations performed with the Geometry and Tracking Toolkit v4 (GEANT4). Simulations have been well validated against measured data. Results of image reconstruction algorithms at various speeds and distances will be presented as well as localization capability. Utilizing imaging information will show signal-to-noise gains over spectroscopic algorithms alone.

The putative multidrug resistance protein MRP-7 inhibits methylmercury-associated animal toxicity and dopaminergic neurodegeneration in Caenorhabditis elegans

PubMed Central

VanDuyn, Natalia; Nass, Richard

2013-01-01

Parkinson’s disease (PD) is the most prevalent neurodegenerative motor disorder worldwide, and results in the progressive loss of dopamine (DA) neurons in the substantia nigra pars compacta. Gene-environment interactions are believed to play a significant role in the vast majority of PD cases, yet the toxicants and the associated genes involved in the neuropathology are largely ill-defined. Recent epidemiological and biochemical evidence suggests that methylmercury (MeHg) may be an environmental toxicant that contributes to the development of PD. Here we report that a gene coding for the putative multidrug resistance protein MRP-7 in Caenorhabditis elegans (C. elegans) modulates whole animal and DA neuron sensitivity to MeHg. In this study we demonstrate that genetic knockdown of MRP-7 results in a 2-fold increase in Hg levels and a dramatic increase in stress response proteins associated with the endoplasmic reticulum, golgi apparatus, and mitochondria, as well as an increase in MeHg-associated animal death. Chronic exposure to low concentrations of MeHg induces MRP-7 gene expression, while exposures in MRP-7 genetic knockdown animals results in a loss of DA neuron integrity without affecting whole animal viability. Furthermore, transgenic animals expressing a fluorescent reporter behind the endogenous MRP-7 promoter indicate that the transporter is expressed in DA neurons. These studies show for the first time that a multidrug resistance protein is expressed in DA neurons, and its expression inhibits MeHg-associated DA neuron pathology. PMID:24266639

The putative multidrug resistance protein MRP-7 inhibits methylmercury-associated animal toxicity and dopaminergic neurodegeneration in Caenorhabditis elegans.

PubMed

VanDuyn, Natalia; Nass, Richard

2014-03-01

Parkinson's disease (PD) is the most prevalent neurodegenerative motor disorder worldwide, and results in the progressive loss of dopamine (DA) neurons in the substantia nigra pars compacta. Gene-environment interactions are believed to play a significant role in the vast majority of PD cases, yet the toxicants and the associated genes involved in the neuropathology are largely ill-defined. Recent epidemiological and biochemical evidence suggests that methylmercury (MeHg) may be an environmental toxicant that contributes to the development of PD. Here, we report that a gene coding for the putative multidrug resistance protein MRP-7 in Caenorhabditis elegans modulates whole animal and DA neuron sensitivity to MeHg. In this study, we demonstrate that genetic knockdown of MRP-7 results in a twofold increase in Hg levels and a dramatic increase in stress response proteins associated with the endoplasmic reticulum, golgi apparatus, and mitochondria, as well as an increase in MeHg-associated animal death. Chronic exposure to low concentrations of MeHg induces MRP-7 gene expression, while exposures in MRP-7 genetic knockdown animals results in a loss of DA neuron integrity without affecting whole animal viability. Furthermore, transgenic animals expressing a fluorescent reporter behind the endogenous MRP-7 promoter indicate that the transporter is expressed in DA neurons. These studies show for the first time that a multidrug resistance protein is expressed in DA neurons, and its expression inhibits MeHg-associated DA neuron pathology. © 2013 International Society for Neurochemistry.

Partial Least Squares with Structured Output for Modelling the Metabolomics Data Obtained from Complex Experimental Designs: A Study into the Y-Block Coding.

PubMed

Xu, Yun; Muhamadali, Howbeer; Sayqal, Ali; Dixon, Neil; Goodacre, Royston

2016-10-28

Partial least squares (PLS) is one of the most commonly used supervised modelling approaches for analysing multivariate metabolomics data. PLS is typically employed as either a regression model (PLS-R) or a classification model (PLS-DA). However, in metabolomics studies it is common to investigate multiple, potentially interacting, factors simultaneously following a specific experimental design. Such data often cannot be considered as a "pure" regression or a classification problem. Nevertheless, these data have often still been treated as a regression or classification problem and this could lead to ambiguous results. In this study, we investigated the feasibility of designing a hybrid target matrix Y that better reflects the experimental design than simple regression or binary class membership coding commonly used in PLS modelling. The new design of Y coding was based on the same principle used by structural modelling in machine learning techniques. Two real metabolomics datasets were used as examples to illustrate how the new Y coding can improve the interpretability of the PLS model compared to classic regression/classification coding.

What Is the Moral Imperative of Workplace Learning: Unlocking the DaVinci Code of Human Resource Development?

ERIC Educational Resources Information Center

Short, Tom

2006-01-01

In the course of the author's doctoral study, he is exploring the strategic linkages between learning activities in the modern workplace and the long-term success they bring to organisations. For many years, this challenge has been the Holy Grail of human resource (HR) development practitioners, who invest heavily on training and professional…

Functional identification of glutamate cysteine ligase and glutathione synthetase in the marine yeast Rhodosporidium diobovatum.

PubMed

Kong, Min; Wang, Fengjuan; Tian, Liuying; Tang, Hui; Zhang, Liping

2017-12-15

Glutathione (GSH) fulfills a variety of metabolic functions, participates in oxidative stress response, and defends against toxic actions of heavy metals and xenobiotics. In this study, GSH was detected in Rhodosporidium diobovatum by high-performance liquid chromatography (HPLC). Then, two novel enzymes from R. diobovatum were characterized that convert glutamate, cysteine, and glycine into GSH. Based on reverse transcription PCR, we obtained the glutathione synthetase gene (GSH2), 1866 bp, coding for a 56.6-kDa protein, and the glutamate cysteine ligase gene (GSH1), 2469 bp, coding for a 90.5-kDa protein. The role of GSH1 and GSH2 for the biosynthesis of GSH in the marine yeast R. diobovatum was determined by deletions using the CRISPR-Cas9 nuclease system and enzymatic activity. These results also showed that GSH1 and GSH2 were involved in the production of GSH and are thus being potentially useful to engineer GSH pathways. Alternatively, pET-GSH constructed using vitro recombination could be used to detect the function of genes related to GSH biosynthesis. Finally, the fermentation parameters determined in the present study provide a reference for industrial GSH production in R. diobovatum.

Functional identification of glutamate cysteine ligase and glutathione synthetase in the marine yeast Rhodosporidium diobovatum

NASA Astrophysics Data System (ADS)

Kong, Min; Wang, Fengjuan; Tian, Liuying; Tang, Hui; Zhang, Liping

2018-02-01

Glutathione (GSH) fulfills a variety of metabolic functions, participates in oxidative stress response, and defends against toxic actions of heavy metals and xenobiotics. In this study, GSH was detected in Rhodosporidium diobovatum by high-performance liquid chromatography (HPLC). Then, two novel enzymes from R. diobovatum were characterized that convert glutamate, cysteine, and glycine into GSH. Based on reverse transcription PCR, we obtained the glutathione synthetase gene ( GSH2), 1866 bp, coding for a 56.6-kDa protein, and the glutamate cysteine ligase gene ( GSH1), 2469 bp, coding for a 90.5-kDa protein. The role of GSH1 and GSH2 for the biosynthesis of GSH in the marine yeast R. diobovatum was determined by deletions using the CRISPR-Cas9 nuclease system and enzymatic activity. These results also showed that GSH1 and GSH2 were involved in the production of GSH and are thus being potentially useful to engineer GSH pathways. Alternatively, pET- GSH constructed using vitro recombination could be used to detect the function of genes related to GSH biosynthesis. Finally, the fermentation parameters determined in the present study provide a reference for industrial GSH production in R. diobovatum.

Reduced levels of Cacna1c attenuate mesolimbic dopamine system function.

PubMed

Terrillion, C E; Dao, D T; Cachope, R; Lobo, M K; Puche, A C; Cheer, J F; Gould, T D

2017-06-01

Genetic variation in CACNA1C, which codes for the L-type calcium channel (LTCC) Ca v 1.2, is associated with clinical diagnoses of bipolar disorder, depression and schizophrenia. Dysregulation of the mesolimbic-dopamine (ML-DA) system is linked to these syndromes and LTCCs are required for normal DAergic neurotransmission between the ventral tegmental area (VTA) and nucleus accumbens (NAc). It is unclear, however, how variations in CACNA1C genotype, and potential subsequent changes in expression levels in these regions, modify risk. Using constitutive and conditional knockout mice, and treatment with the LTCC antagonist nimodipine, we examined the role of Cacna1c in DA-mediated behaviors elicited by psychomotor stimulants. Using fast-scan cyclic voltammetry, DA release and reuptake in the NAc were measured. We find that subsecond DA release in Cacna1c haploinsufficient mice lacks normal sensitivity to inhibition of the DA transporter (DAT). Constitutive haploinsufficiency of Cacna1c led to attenuation of hyperlocomotion following acute administration of stimulants specific to DAT, and locomotor sensitization of these mice to the DAT antagonist GBR12909 did not reach the same level as wild-type mice. The maintenance of sensitization to GBR12909 was attenuated by administration of nimodipine. Sensitization to GBR12909 was attenuated in mice with reduced Cacna1c selectively in the VTA but not in the NAc. Our findings show that Cacna1c is crucial for normal behavioral responses to DA stimulants and that its activity in the VTA is required for behavioral sensitization. Cacna1c likely exerts these effects through modifications to presynaptic ML-DA system function. © 2017 John Wiley & Sons Ltd and International Behavioural and Neural Genetics Society.

Extended capability of the integrated transport analysis suite, TASK3D-a, for LHD experiment

NASA Astrophysics Data System (ADS)

Yokoyama, M.; Seki, R.; Suzuki, C.; Sato, M.; Emoto, M.; Murakami, S.; Osakabe, M.; Tsujimura, T. Ii.; Yoshimura, Y.; Ido, T.; Ogawa, K.; Satake, S.; Suzuki, Y.; Goto, T.; Ida, K.; Pablant, N.; Gates, D.; Warmer, F.; Vincenzi, P.; Simulation Reactor Research Project, Numerical; LHD Experiment Group

2017-12-01

The integrated transport analysis suite, TASK3D-a (Analysis), has been developed to be capable for routine whole-discharge analyses of plasmas confined in three-dimensional (3D) magnetic configurations such as the LHD. The routine dynamic energy balance analysis for NBI-heated plasmas was made possible in the first version released in September 2012. The suite has been further extended through implementing additional modules for neoclassical transport and ECH deposition for 3D configurations. A module has also been added for creating systematic data for the International Stellarator-Heliotron Confinement and Profile Database. Improvement of neutral beam injection modules for multiple-ion species plasmas and loose coupling with a large-simulation code are also highlights of recent developments.

Insect midgut α-mannosidases from family 38 and 47 with emphasis on those of Tenebrio molitor.

PubMed

Moreira, Nathalia R; Cardoso, Christiane; Ribeiro, Alberto F; Ferreira, Clelia; Terra, Walter R

2015-12-01

α-Mannosidases are enzymes which remove non-reducing terminal residues from glycoconjugates. Data on both GH47 and GH38 (Golgi and lysosomal) enzymes are available. Data on insect midgut α-mannosidases acting in digestion are preliminary and do not include enzyme sequences. Tenebrio molitor midgut α-mannosidases were separated by chromatography into two activity peaks: a major (Man1) and a minor (Man2). An antibody generated against a synthetic peptide corresponding to a sequence of α-mannosidase fragment recognizes Man2 but not Man1. That fragment was later found to correspond to TmMan2 (GenBank access KP892646), showing that the cDNA coding for Man2 is actually TmMan2. TmMan2 codes for a mature α-mannosidase with 107.5 kDa. Purified Man2 originates after SDS-PAGE one band of about 72 kDa and another of 51 kDa, which sums 123 kDa, in agreement with gel filtration (123 kDa) data. These results suggest that Man2 is processed into peptides that remain noncovalently linked within the functional enzyme. The physical and kinetical properties of purified Man1 and Man2 are similar. They have a molecular mass of 123 kDa (gel filtration), pH optimum (5.6) and response to inhibitors like swainsonine (Man1 Ki, 68 nM; Man2 Ki, 63 nM) and deoxymannojirimycin (Man1 Ki, 0.12 mM; Man2 Ki, 0.15 mM). Their substrate specificities are a little different as Man2 hydrolyzes α-1,3 and α-1,6 bonds better than α-1,2, whereas the contrary is true for Man1. Thus, they pertain to Class II (GH38 α-mannosidases), that are catabolic α-mannosidases similar to lysosomal α-mannosidase. However, Man2, in contrast to true lysosomal α-mannosidase, is secreted (immunocytolocalization data) into the midgut contents. There, Man2 may participate in digestion of fungal cell walls, known to have α-mannosides in their outermost layer. The amount of family 38 α-mannosidase sequences found in the transcriptome (454 pyrosequencing) of the midgut of 9 insects pertaining to 5 orders is perhaps related to the diet of these organisms, as suggested by a large number of lysosomal α-mannosidase in the T. molitor midgut. Copyright © 2015 Elsevier Ltd. All rights reserved.

Are Striatal Tyrosine Hydroxylase Interneurons Dopaminergic?

PubMed Central

Xenias, Harry S.; Ibáñez-Sandoval, Osvaldo; Koós, Tibor

2015-01-01

Striatal GABAergic interneurons that express the gene for tyrosine hydroxylase (TH) have been identified previously by several methods. Although generally assumed to be dopaminergic, possibly serving as a compensatory source of dopamine (DA) in Parkinson's disease, this assumption has never been tested directly. In TH–Cre mice whose nigrostriatal pathway had been eliminated unilaterally with 6-hydroxydopamine, we injected a Cre-dependent virus coding for channelrhodopsin-2 and enhanced yellow fluorescent protein unilaterally into the unlesioned midbrain or bilaterally into the striatum. Fast-scan cyclic voltammetry in striatal slices revealed that both optical and electrical stimulation readily elicited DA release in control striata but not from contralateral striata when nigrostriatal neurons were transduced. In contrast, neither optical nor electrical stimulation could elicit striatal DA release in either the control or lesioned striata when the virus was injected directly into the striatum transducing only striatal TH interneurons. This demonstrates that striatal TH interneurons do not release DA. Fluorescence immunocytochemistry in enhanced green fluorescent protein (EGFP)–TH mice revealed colocalization of DA, l-amino acid decarboxylase, the DA transporter, and vesicular monoamine transporter-2 with EGFP in midbrain dopaminergic neurons but not in any of the striatal EGFP–TH interneurons. Optogenetic activation of striatal EGFP–TH interneurons produced strong GABAergic inhibition in all spiny neurons tested. These results indicate that striatal TH interneurons are not dopaminergic but rather are a type of GABAergic interneuron that expresses TH but none of the other enzymes or transporters necessary to operate as dopaminergic neurons and exert widespread GABAergic inhibition onto direct and indirect spiny neurons. PMID:25904808

Development and pilot testing of a Decision Aid (DA) for women with early-stage breast cancer considering contralateral prophylactic mastectomy.

PubMed

Ager, B; Jansen, J; Porter, D; Phillips, K A; Glassey, R; Butow, P

2018-05-22

Describe the development, acceptability and feasibility of a Decision Aid (DA) for women with early-stage breast cancer (BC) at average contralateral breast cancer (CBC) risk considering contralateral prophylactic mastectomy (CPM). The DA was developed using the International Patient Decision Aid Standards (IPDAS) and the Ottawa Decision Support Framework. It provides evidence-based information about CPM in a booklet format combining text, graphs and images of surgical options. Twenty-three women with a history of early-stage breast cancer were interviewed in person or over the phone using a 'think aloud approach'. Framework analysis was used to code and analyse data. Twenty-three women participated in the study. Mean age of participants was 58.6 years and time since diagnosis ranged from 14 months to 21 years. Five women had CPM and eighteen had not. Women strongly endorsed the DA. Many felt validated by a section on appearance and found information on average risk of recurrence and metastases helpful, however, noted the importance of discussing personal risk with their surgeon. Many requested more information on surgery details (time taken, recovery) and costs of the different options. The DA was acceptable to women, including the format, content and proposed implementation strategies. Practical and financial issues are important to women in considering treatment options. Women appreciate information about CPM at diagnosis and emphasised the importance of discussing potential downsides of the procedure in addition to benefits. The DA was considered acceptable to facilitate such discussions. Copyright © 2018 Elsevier Ltd. All rights reserved.

Material Modeling for Terminal Ballistic Simulation

DTIC Science & Technology

1992-09-01

DYNA-3D-a nonlinear, explicit, three-dimensional finite element code for solid and structural mechanics- user manual. Technical Report UCRL -MA...Rep. UCRL -50108, Rev. 1, Lawrence Livermore Laboratory, 1977. [34] S. P. Marsh. LASL Shock Hugoniot Data. University of California Press, Berkeley, CA...Steinberg. Equation of state and strength properties of selected ma- teriaJs. Tech. Rep. UCRL -MA-106439, Lawrence Livermore National Labo- ratory, 1991. [371

Uncertainty Analysis Principles and Methods

DTIC Science & Technology

2007-09-01

error source . The Data Processor converts binary coded numbers to values, performs D/A curve fitting and applies any correction factors that may be...describes the stages or modules involved in the measurement process. We now need to identify all relevant error sources and develop the mathematical... sources , gathering and maintaining the data needed, and completing and reviewing the collection of information. Send comments regarding this burden

Use of the Coding Causes of Death in HIV in the classification of deaths in Northeastern Brazil.

PubMed

Alves, Diana Neves; Bresani-Salvi, Cristiane Campello; Batista, Joanna d'Arc Lyra; Ximenes, Ricardo Arraes de Alencar; Miranda-Filho, Demócrito de Barros; Melo, Heloísa Ramos Lacerda de; Albuquerque, Maria de Fátima Pessoa Militão de

2017-01-01

Describe the coding process of death causes for people living with HIV/AIDS, and classify deaths as related or unrelated to immunodeficiency by applying the Coding Causes of Death in HIV (CoDe) system. A cross-sectional study that codifies and classifies the causes of deaths occurring in a cohort of 2,372 people living with HIV/AIDS, monitored between 2007 and 2012, in two specialized HIV care services in Pernambuco. The causes of death already codified according to the International Classification of Diseases were recoded and classified as deaths related and unrelated to immunodeficiency by the CoDe system. We calculated the frequencies of the CoDe codes for the causes of death in each classification category. There were 315 (13%) deaths during the study period; 93 (30%) were caused by an AIDS-defining illness on the Centers for Disease Control and Prevention list. A total of 232 deaths (74%) were related to immunodeficiency after application of the CoDe. Infections were the most common cause, both related (76%) and unrelated (47%) to immunodeficiency, followed by malignancies (5%) in the first group and external causes (16%), malignancies (12 %) and cardiovascular diseases (11%) in the second group. Tuberculosis comprised 70% of the immunodeficiency-defining infections. Opportunistic infections and aging diseases were the most frequent causes of death, adding multiple disease burdens on health services. The CoDe system increases the probability of classifying deaths more accurately in people living with HIV/AIDS. Descrever o processo de codificação das causas de morte em pessoas vivendo com HIV/Aids, e classificar os óbitos como relacionados ou não relacionados à imunodeficiência aplicando o sistema Coding Causes of Death in HIV (CoDe). Estudo transversal, que codifica e classifica as causas dos óbitos ocorridos em uma coorte de 2.372 pessoas vivendo com HIV/Aids acompanhadas entre 2007 e 2012 em dois serviços de atendimento especializado em HIV em Pernambuco. As causas de óbito já codificadas a partir da Classificação Internacional de Doenças foram recodificadas e classificadas como óbitos relacionados e não relacionados à imunodeficiência pelo sistema CoDe. Foram calculadas as frequências dos códigos CoDe das causas do óbito em cada categoria de classificação. Ocorreram 315 (13%) óbitos no período do estudo; 93 (30%) tinham como causa uma doença definidora de Aids da lista do Centers for Disease Control and Prevention. No total 232 óbitos (74%) foram relacionados à imunodeficiência após aplicar o CoDe. As infecções foram as causas mais comuns, tanto nos óbitos relacionados (76%) como não relacionados (47%) à imunodeficiência, seguindo-se de malignidades (5%) no primeiro grupo e de causas externas (16%), malignidades (12%) e doenças cardiovasculares (11%) no segundo. A tuberculose compreendeu 70% das infecções definidoras de imunodeficiência. Infecções oportunistas e doenças do envelhecimento foram as causas mais frequentes de óbito, imprimindo carga múltipla de doenças aos serviços de saúde. O sistema CoDe aumenta a probabilidade de classificar os óbitos com maior precisão em pessoas vivendo com HIV/Aids.

Can color-coded parametric maps improve dynamic enhancement pattern analysis in MR mammography?

PubMed

Baltzer, P A; Dietzel, M; Vag, T; Beger, S; Freiberg, C; Herzog, A B; Gajda, M; Camara, O; Kaiser, W A

2010-03-01

Post-contrast enhancement characteristics (PEC) are a major criterion for differential diagnosis in MR mammography (MRM). Manual placement of regions of interest (ROIs) to obtain time/signal intensity curves (TSIC) is the standard approach to assess dynamic enhancement data. Computers can automatically calculate the TSIC in every lesion voxel and combine this data to form one color-coded parametric map (CCPM). Thus, the TSIC of the whole lesion can be assessed. This investigation was conducted to compare the diagnostic accuracy (DA) of CCPM with TSIC for the assessment of PEC. 329 consecutive patients with 469 histologically verified lesions were examined. MRM was performed according to a standard protocol (1.5 T, 0.1 mmol/kgbw Gd-DTPA). ROIs were drawn manually within any lesion to calculate the TSIC. CCPMs were created in all patients using dedicated software (CAD Sciences). Both methods were rated by 2 observers in consensus on an ordinal scale. Receiver operating characteristics (ROC) analysis was used to compare both methods. The area under the curve (AUC) was significantly (p=0.026) higher for CCPM (0.829) than TSIC (0.749). The sensitivity was 88.5% (CCPM) vs. 82.8% (TSIC), whereas equal specificity levels were found (CCPM: 63.7%, TSIC: 63.0%). The color-coded parametric maps (CCPMs) showed a significantly higher DA compared to TSIC, in particular the sensitivity could be increased. Therefore, the CCPM method is a feasible approach to assessing dynamic data in MRM and condenses several imaging series into one parametric map. © Georg Thieme Verlag KG Stuttgart · New York.

Open source data assimilation framework for hydrological modeling

NASA Astrophysics Data System (ADS)

Ridler, Marc; Hummel, Stef; van Velzen, Nils; Katrine Falk, Anne; Madsen, Henrik

2013-04-01

An open-source data assimilation framework is proposed for hydrological modeling. Data assimilation (DA) in hydrodynamic and hydrological forecasting systems has great potential to improve predictions and improve model result. The basic principle is to incorporate measurement information into a model with the aim to improve model results by error minimization. Great strides have been made to assimilate traditional in-situ measurements such as discharge, soil moisture, hydraulic head and snowpack into hydrologic models. More recently, remotely sensed data retrievals of soil moisture, snow water equivalent or snow cover area, surface water elevation, terrestrial water storage and land surface temperature have been successfully assimilated in hydrological models. The assimilation algorithms have become increasingly sophisticated to manage measurement and model bias, non-linear systems, data sparsity (time & space) and undetermined system uncertainty. It is therefore useful to use a pre-existing DA toolbox such as OpenDA. OpenDA is an open interface standard for (and free implementation of) a set of tools to quickly implement DA and calibration for arbitrary numerical models. The basic design philosophy of OpenDA is to breakdown DA into a set of building blocks programmed in object oriented languages. To implement DA, a model must interact with OpenDA to create model instances, propagate the model, get/set variables (or parameters) and free the model once DA is completed. An open-source interface for hydrological models exists capable of all these tasks: OpenMI. OpenMI is an open source standard interface already adopted by key hydrological model providers. It defines a universal approach to interact with hydrological models during simulation to exchange data during runtime, thus facilitating the interactions between models and data sources. The interface is flexible enough so that models can interact even if the model is coded in a different language, represent processes from a different domain or have different spatial and temporal resolutions. An open source framework that bridges OpenMI and OpenDA is presented. The framework provides a generic and easy means for any OpenMI compliant model to assimilate observation measurements. An example test case will be presented using MikeSHE, and OpenMI compliant fully coupled integrated hydrological model that can accurately simulate the feedback dynamics of overland flow, unsaturated zone and saturated zone.

Molecular characterization of the full-length L and M RNAs of Tomato yellow ring virus, a member of the genus Tospovirus.

PubMed

Chen, Tsung-Chi; Li, Ju-Ting; Fan, Ya-Shu; Yeh, Yi-Chun; Yeh, Shyi-Dong; Kormelink, Richard

2013-06-01

Tomato yellow ring virus (TYRV), first isolated from tomato in Iran, was classified as a non-approved species of the genus Tospovirus based on the characterization of its genomic S RNA. In the current study, the complete sequences of the genomic L and M RNAs of TYRV were determined and analyzed. The L RNA has 8,877 nucleotides (nt) and codes in the viral complementary (vc) strand for the putative RNA-dependent RNA polymerase (RdRp) of 2,873 amino acids (aa) (331 kDa). The RdRp of TYRV shares the highest aa sequence identity (88.7 %) with that of Iris yellow spot virus (IYSV), and contains conserved motifs shared with those of the animal-infecting bunyaviruses. The M RNA contains 4,786 nt and codes in ambisense arrangement for the NSm protein of 308 aa (34.5 kDa) in viral sense, and the Gn/Gc glycoprotein precursor (GP) of 1,310 aa (128 kDa) in vc-sense. Phylogenetic analyses indicated that TYRV is closely clustered with IYSV and Polygonum ringspot virus (PolRSV). The NSm and GP of TYRV share the highest aa sequence identity with those of IYSV and PolRSV (89.9 and 80.2-86.5 %, respectively). Moreover, the GPs of TYRV, IYSV, and PolRSV share highly similar characteristics, among which an identical deduced N-terminal protease cleavage site that is distinct from all tospoviral GPs analyzed thus far. Taken together, the elucidation of the complete genome sequence and biological features of TYRV support a close ancestral relationship with IYSV and PolRSV.

PlotXY: A High Quality Plotting System for the Herschel Interactive Processing Environment (HIPE) and the Astronomical Community

NASA Astrophysics Data System (ADS)

Panuzzo, P.; Li, J.; Caux, E.

2012-09-01

The Herschel Interactive Processing Environment (HIPE) was developed by the European Space Agency (ESA) in collaboration with NASA and the Herschel Instrument Control Centres, to provide the astronomical community a complete environment to process and analyze the data gathered by the Herschel Space Observatory. One of the most important components of HIPE is the plotting system (named PlotXY) that we present here. With PlotXY it is possible to produce easily high quality publication-ready 2D plots. It provides a long list of features, with fully configurable components, and interactive zooming. The entire code of HIPE is written in Java and is open source released under the GNU Lesser General Public License version 3. A new version of PlotXY is being developed to be independent from the HIPE code base; it is available to the software development community for the inclusion in other projects at the URL http://code.google.com/p/jplot2d/.

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-09

DOT National Transportation Integrated Search

2008-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, U.S. and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (U.S. Point and Foreign Point).

DOT National Transportation Integrated Search

2009-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, U.S. and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (U.S. Point and Foreign Point).

DOT National Transportation Integrated Search

2009-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-07

DOT National Transportation Integrated Search

2011-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-01

DOT National Transportation Integrated Search

2013-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-05

DOT National Transportation Integrated Search

2013-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2007-12

DOT National Transportation Integrated Search

2007-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-05

DOT National Transportation Integrated Search

2011-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-02

DOT National Transportation Integrated Search

2012-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-01

DOT National Transportation Integrated Search

2008-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-12

DOT National Transportation Integrated Search

2011-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-04

DOT National Transportation Integrated Search

2008-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-02

DOT National Transportation Integrated Search

2013-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-08

DOT National Transportation Integrated Search

2011-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-07

DOT National Transportation Integrated Search

2011-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-05

DOT National Transportation Integrated Search

2008-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-12

DOT National Transportation Integrated Search

2012-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-09

DOT National Transportation Integrated Search

2012-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-03

DOT National Transportation Integrated Search

2012-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-10

DOT National Transportation Integrated Search

2011-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-06

DOT National Transportation Integrated Search

2011-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-06

DOT National Transportation Integrated Search

2011-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-03

DOT National Transportation Integrated Search

2012-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-08

DOT National Transportation Integrated Search

2013-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-11

DOT National Transportation Integrated Search

2012-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-01

DOT National Transportation Integrated Search

2012-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-04

DOT National Transportation Integrated Search

2013-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-09

DOT National Transportation Integrated Search

2011-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-02

DOT National Transportation Integrated Search

2012-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-08

DOT National Transportation Integrated Search

2011-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-06

DOT National Transportation Integrated Search

2008-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-02

DOT National Transportation Integrated Search

2008-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-09

DOT National Transportation Integrated Search

2011-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-10

DOT National Transportation Integrated Search

2012-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-11

DOT National Transportation Integrated Search

2011-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-10

DOT National Transportation Integrated Search

2011-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-06

DOT National Transportation Integrated Search

2013-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-03

DOT National Transportation Integrated Search

2013-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-11

DOT National Transportation Integrated Search

2011-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-01

DOT National Transportation Integrated Search

2012-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-07

DOT National Transportation Integrated Search

2013-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-04

DOT National Transportation Integrated Search

2012-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-08

DOT National Transportation Integrated Search

2008-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-04

DOT National Transportation Integrated Search

2012-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-05

DOT National Transportation Integrated Search

2012-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Development of Civil Works Energy Goals for Dredging Operations.

DTIC Science & Technology

1984-10-01

yd H,N RPT Reporting Period 4. Project report 5. Monthly report H,N DAT Date reporting code in the form MMDDY MM = month DD = day Y = last digit in...12) W*ATTN: Libary 39180 -SA e d esClin 9,0 ATT: AF.A-DT-E Allied4 CoSmand Surop 27CE ATN: D*A (3 WESo ATN CAbr9240918 -,hi Sledonh 91,343oman 930

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-07

DOT National Transportation Integrated Search

2010-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-12

DOT National Transportation Integrated Search

2008-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-05

DOT National Transportation Integrated Search

2008-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-08

DOT National Transportation Integrated Search

2008-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-03

DOT National Transportation Integrated Search

2009-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-04

DOT National Transportation Integrated Search

2008-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-09

DOT National Transportation Integrated Search

2009-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-01

DOT National Transportation Integrated Search

2009-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-07

DOT National Transportation Integrated Search

2008-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-02

DOT National Transportation Integrated Search

2009-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-09

DOT National Transportation Integrated Search

2008-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-12

DOT National Transportation Integrated Search

2010-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-11

DOT National Transportation Integrated Search

2010-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-01

DOT National Transportation Integrated Search

2010-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-02

DOT National Transportation Integrated Search

2013-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-04

DOT National Transportation Integrated Search

2010-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-01

DOT National Transportation Integrated Search

2013-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-02

DOT National Transportation Integrated Search

2010-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-12

DOT National Transportation Integrated Search

2009-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-11

DOT National Transportation Integrated Search

2009-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-03

DOT National Transportation Integrated Search

2013-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-04

DOT National Transportation Integrated Search

2013-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, U.S. and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (U.S. Point and Foreign Point).

DOT National Transportation Integrated Search

2009-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-04

DOT National Transportation Integrated Search

2009-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-09

DOT National Transportation Integrated Search

2009-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-02

DOT National Transportation Integrated Search

2010-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-05

DOT National Transportation Integrated Search

2010-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-12

DOT National Transportation Integrated Search

2009-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-01

DOT National Transportation Integrated Search

2011-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-10

DOT National Transportation Integrated Search

2010-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-02

DOT National Transportation Integrated Search

2009-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-11

DOT National Transportation Integrated Search

2009-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-03

DOT National Transportation Integrated Search

2010-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-05

DOT National Transportation Integrated Search

2009-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-08

DOT National Transportation Integrated Search

2009-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-04

DOT National Transportation Integrated Search

2010-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-06

DOT National Transportation Integrated Search

2009-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-07

DOT National Transportation Integrated Search

2009-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-01

DOT National Transportation Integrated Search

2010-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-10

DOT National Transportation Integrated Search

2009-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-08

DOT National Transportation Integrated Search

2012-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2014-01

DOT National Transportation Integrated Search

2014-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-10

DOT National Transportation Integrated Search

2013-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-11

DOT National Transportation Integrated Search

2013-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2014-02

DOT National Transportation Integrated Search

2014-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2014-03

DOT National Transportation Integrated Search

2014-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-07

DOT National Transportation Integrated Search

2012-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-09

DOT National Transportation Integrated Search

2013-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-12

DOT National Transportation Integrated Search

2013-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-05

DOT National Transportation Integrated Search

2012-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-06

DOT National Transportation Integrated Search

2012-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2006-12

DOT National Transportation Integrated Search

2006-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-03

DOT National Transportation Integrated Search

2008-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2006-12

DOT National Transportation Integrated Search

2006-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2005-12

DOT National Transportation Integrated Search

2005-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2005-12

DOT National Transportation Integrated Search

2005-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2007-12

DOT National Transportation Integrated Search

2007-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-01

DOT National Transportation Integrated Search

2008-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-05

DOT National Transportation Integrated Search

2009-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-06

DOT National Transportation Integrated Search

2010-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-08

DOT National Transportation Integrated Search

2012-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-03

DOT National Transportation Integrated Search

2010-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-07

DOT National Transportation Integrated Search

2010-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-06

DOT National Transportation Integrated Search

2009-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-05

DOT National Transportation Integrated Search

2010-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-12

DOT National Transportation Integrated Search

2012-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-07

DOT National Transportation Integrated Search

2013-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-06

DOT National Transportation Integrated Search

2013-06-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-11

DOT National Transportation Integrated Search

2012-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-11

DOT National Transportation Integrated Search

2008-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-10

DOT National Transportation Integrated Search

2008-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2009-03

DOT National Transportation Integrated Search

2009-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-11

DOT National Transportation Integrated Search

2013-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-04

DOT National Transportation Integrated Search

2011-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2014-01

DOT National Transportation Integrated Search

2014-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2014-02

DOT National Transportation Integrated Search

2014-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2014-03

DOT National Transportation Integrated Search

2014-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-01

DOT National Transportation Integrated Search

2011-01-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-09

DOT National Transportation Integrated Search

2010-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-08

DOT National Transportation Integrated Search

2010-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-09

DOT National Transportation Integrated Search

2013-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-10

DOT National Transportation Integrated Search

2013-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-03

DOT National Transportation Integrated Search

2011-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-12

DOT National Transportation Integrated Search

2013-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-11

DOT National Transportation Integrated Search

2010-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-10

DOT National Transportation Integrated Search

2010-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-02

DOT National Transportation Integrated Search

2011-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-05

DOT National Transportation Integrated Search

2011-05-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2010-12

DOT National Transportation Integrated Search

2010-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-04

DOT National Transportation Integrated Search

2011-04-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-02

DOT National Transportation Integrated Search

2011-02-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IM - T-100 and T-100(f) International Market Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2011-03

DOT National Transportation Integrated Search

2011-03-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-09

DOT National Transportation Integrated Search

2012-09-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2012-07

DOT National Transportation Integrated Search

2012-07-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2013-08

DOT National Transportation Integrated Search

2013-08-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-12

DOT National Transportation Integrated Search

2008-12-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-10

DOT National Transportation Integrated Search

2008-10-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

Data Bank 28IS - T-100 and T-100(f) International Segment Data, US and Foreign Air Carriers Traffic and Capacity Data (World Area Code) - 6-Month Restricted (US Point and Foreign Point) : [2008-11

DOT National Transportation Integrated Search

2008-11-01

This CD presents data reported by U.S. carriers operating between airports located within the boundaries of the United States and its territories. These data are often referred to as either "market" or on-flight origin and destination records. The da...

PCI Choice: Cardiovascular clinicians' perceptions of shared decision making in stable coronary artery disease.

PubMed

Coylewright, Megan; O'Neill, Elizabeth S; Dick, Sara; Grande, Stuart W

2017-06-01

Describe cardiovascular clinicians' perceptions of Shared Decision Making following use of a decision aid (DA) for stable coronary artery disease (CAD) "PCI Choice", in a randomized controlled trial. We conducted a semi-structured qualitative interview study with cardiologists and physician extenders (n=13) after using PCI Choice in practice. Interviews were transcribed then coded. Codes were organized into salient themes. Final themes were determined by consensus with all authors. Most clinicians (70%) had no prior knowledge of SDM or DAs. Mixed views about the role of the DA in the visit were related to misconceptions of how patient education differed from SDM. Qualitative assessment of clinician perceptions generated three themes: 1) Gaps exist in clinician knowledge around SDM; 2) Clinicians are often uncomfortable with modifying baseline practice; and 3) Clinicians express interest in using DAs after initial exposure within a research setting. Use of DAs by clinicians during clinic visits may improve understanding of SDM. Initial use is marked by a reluctance to modify established practice patterns. As clinicians explore new approaches to benefit their patients, there is an opportunity for DAs that provide clinician instruction on core elements of SDM to lead to enhanced SDM in clinical practice. Copyright © 2017 Elsevier B.V. All rights reserved.

Identification of Bombyx mori bidensovirus VD1-ORF4 reveals a novel protein associated with viral structural component.

PubMed

Li, Guohui; Hu, Zhaoyang; Guo, Xuli; Li, Guangtian; Tang, Qi; Wang, Peng; Chen, Keping; Yao, Qin

2013-06-01

Bombyx mori bidensovirus (BmBDV) VD1-ORF4 (open reading frame 4, ORF4) consists of 3,318 nucleotides, which codes for a predicted 1,105-amino acid protein containing a conserved DNA polymerase motif. However, its functions in viral propagation remain unknown. In the current study, the transcription of VD1-ORF4 was examined from 6 to 96 h postinfection (p.i.) by RT-PCR, 5'-RACE revealed the transcription initiation site of BmBDV ORF4 to be -16 nucleotides upstream from the start codon, and 3'-RACE revealed the transcription termination site of VD1-ORF4 to be +7 nucleotides downstream from termination codon. Three different proteins were examined in the extracts of BmBDV-infected silkworms midguts by Western blot using raised antibodies against VD1-ORF4 deduced amino acid, and a specific protein band about 53 kDa was further detected in purified virions using the same antibodies. Taken together, BmBDV VD1-ORF4 codes for three or more proteins during the viral life cycle, one of which is a 53 kDa protein and confirmed to be a component of BmBDV virion.

Sensitivity analysis of a data assimilation technique for hindcasting and forecasting hydrodynamics of a complex coastal water body

NASA Astrophysics Data System (ADS)

Ren, Lei; Hartnett, Michael

2017-02-01

Accurate forecasting of coastal surface currents is of great economic importance due to marine activities such as marine renewable energy and fish farms in coastal regions in recent twenty years. Advanced oceanographic observation systems such as satellites and radars can provide many parameters of interest, such as surface currents and waves, with fine spatial resolution in near real time. To enhance modelling capability, data assimilation (DA) techniques which combine the available measurements with the hydrodynamic models have been used since the 1990s in oceanography. Assimilating measurements into hydrodynamic models makes the original model background states follow the observation trajectory, then uses it to provide more accurate forecasting information. Galway Bay is an open, wind dominated water body on which two coastal radars are deployed. An efficient and easy to implement sequential DA algorithm named Optimal Interpolation (OI) was used to blend radar surface current data into a three-dimensional Environmental Fluid Dynamics Code (EFDC) model. Two empirical parameters, horizontal correlation length and DA cycle length (CL), are inherent within OI. No guidance has previously been published regarding selection of appropriate values of these parameters or how sensitive OI DA is to variations in their values. Detailed sensitivity analysis has been performed on both of these parameters and results presented. Appropriate value of DA CL was examined and determined on producing the minimum Root-Mean-Square-Error (RMSE) between radar data and model background states. Analysis was performed to evaluate assimilation index (AI) of using an OI DA algorithm in the model. AI of the half-day forecasting mean vectors' directions was over 50% in the best assimilation model. The ability of using OI to improve model forecasts was also assessed and is reported upon.

The Virtual Observatory Service TheoSSA: Establishing a Database of Synthetic Stellar Flux Standards I. NLTE Spectral Analysis of the DA-Type White Dwarf G191-B2B *,**,***,****

NASA Technical Reports Server (NTRS)

Rauch, T.; Werner, K.; Bohlin, R.; Kruk, J. W.

2013-01-01

Hydrogen-rich, DA-type white dwarfs are particularly suited as primary standard stars for flux calibration. State-of-the-art NLTE models consider opacities of species up to trans-iron elements and provide reliable synthetic stellar-atmosphere spectra to compare with observations. Aims. We will establish a database of theoretical spectra of stellar flux standards that are easily accessible via a web interface. Methods. In the framework of the Virtual Observatory, the German Astrophysical Virtual Observatory developed the registered service TheoSSA. It provides easy access to stellar spectral energy distributions (SEDs) and is intended to ingest SEDs calculated by any model-atmosphere code. In case of the DA white dwarf G191-B2B, we demonstrate that the model reproduces not only its overall continuum shape but also the numerous metal lines exhibited in its ultraviolet spectrum. Results. TheoSSA is in operation and contains presently a variety of SEDs for DA-type white dwarfs. It will be extended in the near future and can host SEDs of all primary and secondary flux standards. The spectral analysis of G191-B2B has shown that our hydrostatic models reproduce the observations best at Teff =60 000 +/- 2000K and log g=7.60 +/- 0.05.We newly identified Fe vi, Ni vi, and Zn iv lines. For the first time, we determined the photospheric zinc abundance with a logarithmic mass fraction of -4.89 (7.5 × solar). The abundances of He (upper limit), C, N, O, Al, Si, O, P, S, Fe, Ni, Ge, and Sn were precisely determined. Upper abundance limits of about 10% solar were derived for Ti, Cr, Mn, and Co. Conclusions. The TheoSSA database of theoretical SEDs of stellar flux standards guarantees that the flux calibration of all astronomical data and cross-calibration between different instruments can be based on the same models and SEDs calculated with different model-atmosphere codes and are easy to compare.

Unexpected role of the L-domain of calpastatin during the autoproteolytic activation of human erythrocyte calpain.

PubMed

De Tullio, Roberta; Franchi, Alice; Martines, Antonino; Averna, Monica; Pedrazzi, Marco; Melloni, Edon; Sparatore, Bianca

2018-04-26

Autoproteolysis of human erythrocyte calpain-1 proceeds in vitro at high [Ca 2+ ], through the conversion of the 80-kDa catalytic subunit into a 75-kDa activated enzyme that requires lower [Ca 2+ ] for catalysis. Importantly, here we detect a similar 75 kDa calpain-1 form also in vivo , in human meningiomas. Although calpastatin is so far considered the specific inhibitor of calpains, we have previously identified in rat brain a calpastatin transcript truncated at the end of the L-domain (cast110, L-DOM), coding for a protein lacking the inhibitory units. Aim of the present study was to characterize the possible biochemical role of the L-DOM during calpain-1 autoproteolysis in vitro , at high (100 µM) and low (5 µM) [Ca 2+ ]. Here we demonstrate that the L-DOM binds the 80 kDa proenzyme in the absence of Ca 2+ Consequently, we have explored the ability of the 75 kDa activated protease to catalyze at 5 µM Ca 2+ the intermolecular activation of native calpain-1 associated with the L-DOM. Notably, this [Ca 2+ ] is too low to promote the autoproteolytic activation of calpain-1 but enough to support the catalysis of the 75 kDa calpain. We show for the first time that the L-DOM preserves native calpain-1 from the degradation mediated by the 75 kDa form. Taken together, our data suggest that the free L-domain of calpastatin is a novel member of the calpain/calpastatin system endowed with a function alternative to calpain inhibition. For this reason, it will be crucial to define the intracellular relevance of the L-domain in controlling calpain activation/activity in physiopathological conditions having altered Ca 2+ homeostasis. © 2018 The Author(s).

Modeling time-dependent corrosion fatigue crack propagation in 7000 series aluminum alloys

NASA Technical Reports Server (NTRS)

Mason, Mark E.; Gangloff, Richard P.

1994-01-01

Stress corrosion cracking and corrosion fatigue experiments were conducted with the susceptible S-L orientation of AA7075-T651, immersed in acidified and inhibited NaCl solution, to provide a basis for incorporating environmental effects into fatigue crack propagation life prediction codes such as NASA FLAGRO. This environment enhances da/dN by five to ten-fold compared to fatigue in moist air. Time-based crack growth rates from quasi-static load experiments are an order of magnitude too small for accurate linear superposition prediction of da/dN for loading frequencies above 0.001 Hz. Alternate methods of establishing da/dt, based on rising-load or ripple-load-enhanced crack tip strain rate, do not increase da/dt and do not improve linear superposition. Corrosion fatigue is characterized by two regimes of frequency dependence; da/dN is proportional to f(exp -1) below 0.001 Hz and to F(exp 0) to F(exp -0.1) for higher frequencies. Da/dN increases mildly both with increasing hold-time at K(sub max) and with increasing rise-time for a range of loading waveforms. The mild time-dependence is due to cycle-time-dependent corrosion fatigue growth. This behavior is identical for S-L nd L-T crack orientations. The frequency response of environmental fatigue in several 7000 series alloys is variable and depends on undefined compositional or microstructural variables. Speculative explanations are based on the effect of Mg on occluded crack chemistry and embritting hydrogen uptake, or on variable hydrogen diffusion in the crack tip process zone. Cracking in the 7075/NaCl system is adequately described for life prediction by linear superposition for prolonged load-cycle periods, and by a time-dependent upper bound relationship between da/dN and delta K for moderate loading times.

Management changes resulting from hospital accreditation.

PubMed

Oliveira, João Lucas Campos de; Gabriel, Carmen Silvia; Fertonani, Hosanna Pattrig; Matsuda, Laura Misue

2017-03-02

to analyze managers and professionals' perceptions on the changes in hospital management deriving from accreditation. descriptive study with qualitative approach. The participants were five hospital quality managers and 91 other professionals from a wide range of professional categories, hierarchical levels and activity areas at four hospitals in the South of Brazil certified at different levels in the Brazilian accreditation system. They answered the question "Tell me about the management of this hospital before and after the Accreditation". The data were recorded, fully transcribed and transported to the software ATLAS.ti, version 7.1 for access and management. Then, thematic content analysis was applied within the reference framework of Avedis Donabedian's Evaluation in Health. one large family was apprehended, called "Management Changes Resulting from the Accreditation: perspectives of managers and professionals" and five codes, related to the management changes in the operational, structural, financial and cost; top hospital management and quality management domains. the management changes in the hospital organizations resulting from the Accreditation were broad, multifaceted and in line with the improvements of the service quality. analizar las percepciones de gestores y trabajadores sobre los cambios en la gestión hospitalaria resultantes de la Acreditación. estudio descriptivo con aproximación cualitativa. Participaron cinco gestores de calidad hospitalaria y otros 91 trabajadores de las más diversas categorías profesionales, niveles jerárquicos y áreas de actuación de cuatro hospitales del sur de Brasil certificados por la Acreditación nacional de diferentes niveles, que contestaron la pregunta "Cuéntame sobre la gestión de este hospital, antes y después de la Acreditación". Los datos fueron grabados, transcritos por completo y transportados para acceso y manoseo en el software ATLAS.ti, versión 7.1. A seguir, fue aplicado el análisis de contenido, modalidad temática, a la luz del referencial de la Evaluación en Salud de Avedis Donabedian. fue aprendida una gran categoría temática (family), llamada "Cambios Gerenciales Resultantes de la Acreditación: perspectivas de gestores y trabajadores" y cinco subcategorías (codes), relacionadas a los cambios gerenciales en las esferas operacional; estructural; financiera y de costo; en la alta gestión hospitalaria; y en la gestión de calidad. los cambios gerenciales en las organizaciones hospitalarias, resultantes de la Acreditación, fueron amplias, polifacéticas y coherentes con las mejoras en la calidad de los servicios. analisar as percepções de gestores e trabalhadores sobre as mudanças no gerenciamento hospitalar advindas da Acreditação. estudo descritivo com abordagem qualitativa. Participaram cinco gestores da qualidade hospitalar e outros 91 trabalhadores das mais diversas categorias profissionais, níveis hierárquicos e áreas de atuação de quatro hospitais do sul do Brasil certificados pela Acreditação nacional de diferentes níveis, que responderam à questão "Fale-me sobre o gerenciamento deste hospital, antes e depois da Acreditação". Os dados foram gravados, transcritos na íntegra e transportados para acesso e manejo no software ATLAS.ti, versão 7.1. Após isso, procedeu-se a análise de conteúdo, modalidade temática, sustentada à luz do referencial da Avaliação em Saúde de Avedis Donabedian. apreendeu-se uma grande categoria temática (family), denominada "Mudanças Gerenciais Advindas da Acreditação: perspectivas de gestores e trabalhadores" e cinco subcategorias (codes), relacionadas às mudanças gerenciais no âmbito operacional; estrutural; financeiro e de custo; na alta gestão hospitalar; e na gestão da qualidade. as mudanças gerenciais nas organizações hospitalares, advindas da Acreditação, se mostraram amplas, multifacetadas e coadunam às melhorais da qualidade nos serviços.

In Search of Command and Staff Doctrine.

DTIC Science & Technology

1987-05-01

authority, resposibility , and accountability." 21. In both Article 90 and Article 92 of the Unior Code, the orders of ccmders are given a special...the dates the orders are published, i.e., retroactive and prospective appointments. Hovever, there is presently no procedure for self -terminating...with your- self !" S 137 U. S. Grant, Personal Memoirs 343 (Da Capo Press ed. 1982). See also Op. JAGAF 1978/62, June 6, 1978: "Giving Air Force officers

Scientific Studies of the High-Latitude Ionosphere with the Ionosphere Dynamics and ElectroDynamics - Data Assimilation (IDED-DA) Model

DTIC Science & Technology

2014-09-23

conduct simulations with a high-latitude data assimilation model. The specific objectives are to study magnetosphere-ionosphere ( M -I) coupling processes...based on three physics-based models, including a magnetosphere-ionosphere ( M -I) electrodynamics model, an ionosphere model, and a magnetic...inversion code. The ionosphere model is a high-resolution version of the Ionosphere Forecast Model ( IFM ), which is a 3-D, multi-ion model of the ionosphere

An Update on the Role of Serotonin and its Interplay with Dopamine for Reward.

PubMed

Fischer, Adrian G; Ullsperger, Markus

2017-01-01

The specific role of serotonin and its interplay with dopamine (DA) in adaptive, reward guided behavior as well as drug dependance, still remains elusive. Recently, novel methods allowed cell type specific anatomical, functional and interventional analyses of serotonergic and dopaminergic circuits, promising significant advancement in understanding their functional roles. Furthermore, it is increasingly recognized that co-release of neurotransmitters is functionally relevant, understanding of which is required in order to interpret results of pharmacological studies and their relationship to neural recordings. Here, we review recent animal studies employing such techniques with the aim to connect their results to effects observed in human pharmacological studies and subjective effects of drugs. It appears that the additive effect of serotonin and DA conveys significant reward related information and is subjectively highly euphorizing. Neither DA nor serotonin alone have such an effect. This coincides with optogenetically targeted recordings in mice, where the dopaminergic system codes reward prediction errors (PE), and the serotonergic system mainly unsigned PE. Overall, this pattern of results indicates that joint activity between both systems carries essential reward information and invites parallel investigation of both neurotransmitter systems.

[Motivation and Emotional States: Structural Systemic, Neurochemical, Molecular and Cellular Mechanisms].

PubMed

Bazyan, A S

2016-01-01

The structural, systemic, neurochemical, molecular and cellular mechanisms of organization and coding motivation and emotional states are describe. The GABA and glutamatergic synaptic systems of basal ganglia form a neural network and participate in the implementation of voluntary behavior. Neuropeptides, neurohormones and paracrine neuromodulators involved in the organization of motivation and emotional states, integrated with synaptic systems, controlled by neural networks and organizing goal-directed behavior. Structural centers for united and integrated of information in voluntary and goal-directed behavior are globus pallidus. Substantia nigra pars reticulata switches the information from corticobasal networks to thalamocortical networks, induces global dopaminergic (DA) signal and organize interaction of mesolimbic and nigostriatnoy DA systems controlled by prefrontal and motor cortex. Together with the motor cortex, substantia nigra displays information in the brainstem and spinal cord to implementation of behavior. Motivation states are formed in the interaction of neurohormonal and neuropeptide systems by monoaminergic systems of brain. Emotional states are formed by monoaminergic systems of the mid-brain, where the leading role belongs to the mesolimbic DA system. The emotional and motivation state of the encoded specific epigenetic molecular and chemical pattern of neuron.

Music and the nucleus accumbens.

PubMed

Mavridis, Ioannis N

2015-03-01

Music is a universal feature of human societies over time, mainly because it allows expression and regulation of strong emotions, thus influencing moods and evoking pleasure. The nucleus accumbens (NA), the most important pleasure center of the human brain (dominates the reward system), is the 'king of neurosciences' and dopamine (DA) can be rightfully considered as its 'crown' due to the fundamental role that this neurotransmitter plays in the brain's reward system. Purpose of this article was to review the existing literature regarding the relation between music and the NA. Studies have shown that reward value for music can be coded by activity levels in the NA, whose functional connectivity with auditory and frontal areas increases as a function of increasing musical reward. Listening to music strongly modulates activity in a network of mesolimbic structures involved in reward processing including the NA. The functional connectivity between brain regions mediating reward, autonomic and cognitive processing provides insight into understanding why listening to music is one of the most rewarding and pleasurable human experiences. Musical stimuli can significantly increase extracellular DA levels in the NA. NA DA and serotonin were found significantly higher in animals exposed to music. Finally, passive listening to unfamiliar although liked music showed activations in the NA.

An azoreductase, aerobic NADH-dependent flavoprotein discovered from Bacillus sp.: functional expression and enzymatic characterization.

PubMed

Ooi, Toshihiko; Shibata, Takeshi; Sato, Reiko; Ohno, Hiroaki; Kinoshita, Shinichi; Thuoc, Tran Linh; Taguchi, Seiichi

2007-05-01

The gene coding for an azoreductase, designated as an azrA, was cloned by polymerase chain reaction amplification from the genomic DNA of Bacillus sp. strain B29 isolated from soil. The azrA encoded a protein of 208 amino acids with calculated molecular mass of 22,766 Da. The enzyme was heterologously expressed in Escherichia coli with a strong band of 23 kDa on sodium dodecyl sulfate polyacrylamide gel electrophoresis. Purified recombinant AzrA was a homodimer with a native molecular mass of 48 kDa containing two molecules of flavin mononucleotide (FMN; oxidized). This activity was oxygen insensitive and was nicotinamide adenine dinucleotide (reduced form; NADH) dependent. Recombinant AzrA exhibited a broad pH stability between 6 and 10 with a temperature optimum of 60-80 degrees C. The enzyme cleaved the model azo compound of methyl red [MR, 4'-(dimethylamino)-azobenzene-2-carboxylic acid] into 2-aminobenzoic acid and N, N'-dimethyl-p-phenylenediamine by ping-pong mechanism. The enzyme was not only able to decolorize MR but also able to decolorize sulfonated azo dyes such as Orange I and Acid Red 88.

“We as Drug Addicts Need that Program”: Insight from Rural African American Cocaine Users on Designing a Sexual Risk Reduction Intervention for Their Community

PubMed Central

Montgomery, Brooke E. E.; Stewart, Katharine E.; Wright, Patricia B.; McSweeney, Jean; Booth, Brenda M.

2013-01-01

This focused ethnographic study examines data collected in 2007 from four gender- and age-specific focus groups (FGs) (N = 31) to inform the development of a sexual risk reduction intervention for African American cocaine users in rural Arkansas. A semi-structured protocol was used to guide audio-recorded FGs. Data were entered into Ethnograph and analyzed using constant comparison and content analysis. Four codes with accompanying factors emerged from the data and revealed recommendations for sexual risk reduction interventions with similar populations. Intervention design implications and challenges, study limitations, and future research are discussed. The study was supported by funds from the National Institute of Nursing Research (P20 NR009006-01) and the National Institute on Drug Abuse (1R01DA024575-01 and F31 DA026286-01). PMID:22216991

Streptococcus mutans serotype c tagatose 6-phosphate pathway gene cluster.

PubMed Central

Jagusztyn-Krynicka, E K; Hansen, J B; Crow, V L; Thomas, T D; Honeyman, A L; Curtiss, R

1992-01-01

DNA cloned into Escherichia coli K-12 from a serotype c strain of Streptococcus mutans encodes three enzyme activities for galactose utilization via the tagatose 6-phosphate pathway: galactose 6-phosphate isomerase, tagatose 6-phosphate kinase, and tagatose-1,6-bisphosphate aldolase. The genes coding for the tagatose 6-phosphate pathway were located on a 3.28-kb HindIII DNA fragment. Analysis of the tagatose proteins expressed by recombinant plasmids in minicells was used to determine the sizes of the various gene products. Mutagenesis of these plasmids with transposon Tn5 was used to determine the order of the tagatose genes. Tagatose 6-phosphate isomerase appears to be composed of 14- and 19-kDa subunits. The sizes of the kinase and aldolase were found to be 34 and 36 kDa, respectively. These values correspond to those reported previously for the tagatose pathway enzymes in Staphylococcus aureus and Lactococcus lactis. Images PMID:1328153

Mixing and overshooting in surface convection zones of DA white dwarfs: first results from ANTARES

NASA Astrophysics Data System (ADS)

Kupka, F.; Zaussinger, F.; Montgomery, M. H.

2018-03-01

We present results of a large, high-resolution 3D hydrodynamical simulation of the surface layers of a DA white dwarf (WD) with Teff = 11 800 K and log (g) = 8 using the ANTARES code, the widest and deepest such simulation to date. Our simulations are in good agreement with previous calculations in the Schwarzschild-unstable region and in the overshooting region immediately beneath it. Farther below, in the wave-dominated region, we find that the rms horizontal velocities decay with depth more rapidly than the vertical ones. Since mixing requires both vertical and horizontal displacements, this could have consequences for the size of the region that is well mixed by convection, if this trend is found to hold for deeper layers. We discuss how the size of the mixed region affects the calculated settling times and inferred steady-state accretion rates for WDs with metals observed in their atmospheres.

DA white dwarfs from the LSS-GAC survey DR1: the preliminary luminosity and mass functions and formation rate

NASA Astrophysics Data System (ADS)

Rebassa-Mansergas, A.; Liu, X.-W.; Cojocaru, R.; Yuan, H.-B.; Torres, S.; García-Berro, E.; Xiang, M.-X.; Huang, Y.; Koester, D.; Hou, Y.; Li, G.; Zhang, Y.

2015-06-01

Modern large-scale surveys have allowed the identification of large numbers of white dwarfs. However, these surveys are subject to complicated target selection algorithms, which make it almost impossible to quantify to what extent the observational biases affect the observed populations. The LAMOST (Large Sky Area Multi-Object Fiber Spectroscopic Telescope) Spectroscopic Survey of the Galactic anticentre (LSS-GAC) follows a well-defined set of criteria for selecting targets for observations. This advantage over previous surveys has been fully exploited here to identify a small yet well-characterized magnitude-limited sample of hydrogen-rich (DA) white dwarfs. We derive preliminary LSS-GAC DA white dwarf luminosity and mass functions. The space density and average formation rate of DA white dwarfs we derive are 0.83 ± 0.16 × 10-3 pc-3 and 5.42 ± 0.08 × 10-13 pc-3 yr-1, respectively. Additionally, using an existing Monte Carlo population synthesis code we simulate the population of single DA white dwarfs in the Galactic anticentre, under various assumptions. The synthetic populations are passed through the LSS-GAC selection criteria, taking into account all possible observational biases. This allows us to perform a meaningful comparison of the observed and simulated distributions. We find that the LSS-GAC set of criteria is highly efficient in selecting white dwarfs for spectroscopic observations (80-85 per cent) and that, overall, our simulations reproduce well the observed luminosity function. However, they fail at reproducing an excess of massive white dwarfs present in the observed mass function. A plausible explanation for this is that a sizable fraction of massive white dwarfs in the Galaxy are the product of white dwarf-white dwarf mergers.

Review of Thermal Properties of Snow, Ice and Sea Ice,

DTIC Science & Technology

1981-06-01

AD-AL03 734 COLD RE61ONS RESEARCH AND ENGINEERING LAS HANOVER NH F/G 8/12AI3 3REVIEW OF THERMAL PROPERTIES OF SNOW. ICE AND SEA ICE,(U)UNCLASSIFIlED...Distribution/ Availability Codes Avail and/or D~ Dis~t Special D 1 7 C- T > L) UNITED STATES ARMY CORPS OF ENGINEERS COLD REGIONS RESEARCH AND ENGINEERING...PROGRAM ELEMENT, PROJECT. TASK AREA A WORK UNIT NUMBERS U.S. Army Cold Regions Research and Engineering Laboratory Hanover, New Hampshire 03755 DA Pr

Environmental Effects on the Incubation Time Characteristics in Stress-Corrosion Cracking

DTIC Science & Technology

2011-04-01

Corrosion Experimental Data for Specimen SL51 143 Table B2. Stress Corrosion Experimental Data for Specimen SL76 (3.5% NaCI, K , =6.8M/Wm) 144 Table B3...of action of the external load; - 143 - K =applied stress intensity factor; da/dt=crack growth rate. Table B2. Stress Corrosion Experimental Data for...Submitted to Dr. Asuri K . Vasudevan Scientific Officer Office of Naval Research, Code-332 875 North Randolph Street, Suite 1425, Room- 629

Quantum Turbulence ---Another da Vinci Code---

NASA Astrophysics Data System (ADS)

Tsubota, M.

Quantum turbulence comprises a tangle of quantized vorticeswhich are stable topological defects created by Bose-Einstein condensation, being realized in superfluid helium and atomic Bose-Einstein condensates. In recent years there has been a growing interest in quantum turbulence. One of the important motivations is to understand the relation between quantum and classical turbulence. Quantum turbulence is expected to be much simpler than usual classical turbulence and give a prototype of turbulence. This article reviews shortly the recent research developments on quantum turbulence.

Test of the Constancy - Velocity Hypothesis: Navy Unit Functioning and Performance over 12 Years.

DTIC Science & Technology

1988-01-31

purpose of the United States Government. 17 COSATI CODES 18 SUEJECT T’ERMS C rinue an rev se f necess iy1 f da eao ms een- listment1111 Rate, Change of...38 Velocity, Climate Change , and Upgrade Rate 41 Joint Effects of Culture/Climate and Velocity 43 Conclusions about the Role Played by Velocity 44...which (a) examined change in organizational systems over time, (b) systematically tested different methodological approaches to organizational

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bae, Euiyoung; Bingman, Craig A.; Aceti, David J.

LOC79017 (MW 21.0 kDa, residues 1-188) was annotated as a hypothetical protein encoded by Homo sapiens chromosome 7 open reading frame 24. It was selected as a target by the Center for Eukaryotic Structural Genomics (CESG) because it did not share more than 30% sequence identity with any protein for which the three-dimensional structure is known. The biological function of the protein has not been established yet. Parts of LOC79017 were identified as members of uncharacterized Pfam families (residues 1-95 as PB006073 and residues 104-180 as PB031696). BLAST searches revealed homologues of LOC79017 in many eukaryotes, but none of themmore » have been functionally characterized. Here, we report the crystal structure of H. sapiens protein LOC79017 (UniGene code Hs.530024, UniProt code O75223, CESG target number go.35223).« less

An unusual internal ribosomal entry site of inverted symmetry directs expression of a potato leafroll polerovirus replication-associated protein

PubMed Central

Jaag, Hannah Miriam; Kawchuk, Lawrence; Rohde, Wolfgang; Fischer, Rainer; Emans, Neil; Prüfer, Dirk

2003-01-01

Potato leafroll polerovirus (PLRV) genomic RNA acts as a polycistronic mRNA for the production of proteins P0, P1, and P2 translated from the 5′-proximal half of the genome. Within the P1 coding region we identified a 5-kDa replication-associated protein 1 (Rap1) essential for viral multiplication. An internal ribosome entry site (IRES) with unusual structure and location was identified that regulates Rap1 translation. Core structural elements for internal ribosome entry include a conserved AUG codon and a downstream GGAGAGAGAGG motif with inverted symmetry. Reporter gene expression in potato protoplasts confirmed the internal ribosome entry function. Unlike known IRES motifs, the PLRV IRES is located completely within the coding region of Rap1 at the center of the PLRV genome. PMID:12835413

Advanced Doubling Adding Method for Radiative Transfer in Planetary Atmospheres

NASA Astrophysics Data System (ADS)

Liu, Quanhua; Weng, Fuzhong

2006-12-01

The doubling adding method (DA) is one of the most accurate tools for detailed multiple-scattering calculations. The principle of the method goes back to the nineteenth century in a problem dealing with reflection and transmission by glass plates. Since then the doubling adding method has been widely used as a reference tool for other radiative transfer models. The method has never been used in operational applications owing to tremendous demand on computational resources from the model. This study derives an analytical expression replacing the most complicated thermal source terms in the doubling adding method. The new development is called the advanced doubling adding (ADA) method. Thanks also to the efficiency of matrix and vector manipulations in FORTRAN 90/95, the advanced doubling adding method is about 60 times faster than the doubling adding method. The radiance (i.e., forward) computation code of ADA is easily translated into tangent linear and adjoint codes for radiance gradient calculations. The simplicity in forward and Jacobian computation codes is very useful for operational applications and for the consistency between the forward and adjoint calculations in satellite data assimilation.

The international implications of national and local coordination on building energy codes: Case studies in six cities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Evans, Meredydd; Yu, Sha; Staniszewski, Aaron

Building energy efficiency is an important strategy for reducing greenhouse gas emissions globally. In fact, 55 countries have included building energy efficiency in their Nationally Determined Contributions (NDCs) under the Paris Agreement. This research uses building energy code implementation in six cities across different continents as case studies to assess what it may take for countries to implement the ambitions of their energy efficiency goals. Specifically, we look at the cases of Bogota, Colombia; Da Nang, Vietnam; Eskisehir, Turkey; Mexico City, Mexico; Rajkot, India; and Tshwane, South Africa, all of which are “deep dive” cities under the Sustainable Energy formore » All's Building Efficiency Accelerator. The research focuses on understanding the baseline with existing gaps in implementation and coordination. The methodology used a combination of surveys on code status and interviews with stakeholders at the local and national level, as well as review of published documents. We looked at code development, implementation, and evaluation. The cities are all working to improve implementation, however, the challenges they currently face include gaps in resources, capacity, tools, and institutions to check for compliance. Better coordination between national and local governments could help improve implementation, but that coordination is not yet well established. For example, all six of the cities reported that there was little to no involvement of local stakeholders in development of the national code; only one city reported that it had access to national funding to support code implementation. More robust coordination could better link cities with capacity building and funding for compliance, and ensure that the code reflects local priorities. By understanding gaps in implementation, it can also help in designing more targeted interventions to scale up energy savings.« less

The international implications of national and local coordination on building energy codes: Case studies in six cities

DOE PAGES

Evans, Meredydd; Yu, Sha; Staniszewski, Aaron; ...

2018-04-17

Building energy efficiency is an important strategy for reducing greenhouse gas emissions globally. In fact, 55 countries have included building energy efficiency in their Nationally Determined Contributions (NDCs) under the Paris Agreement. This research uses building energy code implementation in six cities across different continents as case studies to assess what it may take for countries to implement the ambitions of their energy efficiency goals. Specifically, we look at the cases of Bogota, Colombia; Da Nang, Vietnam; Eskisehir, Turkey; Mexico City, Mexico; Rajkot, India; and Tshwane, South Africa, all of which are “deep dive” cities under the Sustainable Energy formore » All's Building Efficiency Accelerator. The research focuses on understanding the baseline with existing gaps in implementation and coordination. The methodology used a combination of surveys on code status and interviews with stakeholders at the local and national level, as well as review of published documents. We looked at code development, implementation, and evaluation. The cities are all working to improve implementation, however, the challenges they currently face include gaps in resources, capacity, tools, and institutions to check for compliance. Better coordination between national and local governments could help improve implementation, but that coordination is not yet well established. For example, all six of the cities reported that there was little to no involvement of local stakeholders in development of the national code; only one city reported that it had access to national funding to support code implementation. More robust coordination could better link cities with capacity building and funding for compliance, and ensure that the code reflects local priorities. By understanding gaps in implementation, it can also help in designing more targeted interventions to scale up energy savings.« less

Novel Xylose Dehydrogenase in the Halophilic Archaeon Haloarcula marismortui†

PubMed Central

Johnsen, Ulrike; Schönheit, Peter

2004-01-01

During growth of the halophilic archaeon Haloarcula marismortui on d-xylose, a specific d-xylose dehydrogenase was induced. The enzyme was purified to homogeneity. It constitutes a homotetramer of about 175 kDa and catalyzed the oxidation of xylose with both NADP+ and NAD+ as cosubstrates with 10-fold higher affinity for NADP+. In addition to d-xylose, d-ribose was oxidized at similar kinetic constants, whereas d-glucose was used with about 70-fold lower catalytic efficiency (kcat/Km). With the N-terminal amino acid sequence of the subunit, an open reading frame (ORF)—coding for a 39.9-kDA protein—was identified in the partially sequenced genome of H. marismortui. The function of the ORF as the gene designated xdh and coding for xylose dehydrogenase was proven by its functional overexpression in Escherichia coli. The recombinant enzyme was reactivated from inclusion bodies following solubilization in urea and refolding in the presence of salts, reduced and oxidized glutathione, and substrates. Xylose dehydrogenase showed the highest sequence similarity to glucose-fructose oxidoreductase from Zymomonas mobilis and other putative bacterial and archaeal oxidoreductases. Activities of xylose isomerase and xylulose kinase, the initial reactions of xylose catabolism of most bacteria, could not be detected in xylose-grown cells of H. marismortui, and the genes that encode them, xylA and xylB, were not found in the genome of H. marismortui. Thus, we propose that this first characterized archaeal xylose dehydrogenase catalyzes the initial step in xylose degradation by H. marismortui. PMID:15342590

Cloning, sequencing, and expression of the apa gene coding for the Mycobacterium tuberculosis 45/47-kilodalton secreted antigen complex.

PubMed

Laqueyrerie, A; Militzer, P; Romain, F; Eiglmeier, K; Cole, S; Marchal, G

1995-10-01

Effective protection against a virulent challenge with Mycobacterium tuberculosis is induced mainly by previous immunization with living attenuated mycobacteria, and it has been hypothesized that secreted proteins serve as major targets in the specific immune response. To identify and purify molecules present in culture medium filtrate which are dominant antigens during effective vaccination, a two-step selection procedure was used to select antigens able to interact with T lymphocytes and/or antibodies induced by immunization with living bacteria and to counterselect antigens interacting with the immune effectors induced by immunization with dead bacteria. A Mycobacterium bovis BCG 45/47-kDa antigen complex, present in BCG culture filtrate, has been previously identified and isolated (F. Romain, A. Laqueyrerie, P. Militzer, P. Pescher, P. Chavarot, M. Lagranderie, G. Auregan, M. Gheorghiu, and G. Marchal, Infect. Immun. 61:742-750, 1993). Since the cognate antibodies recognize the very same antigens present in M. tuberculosis culture medium filtrates, a project was undertaken to clone, express, and sequence the corresponding gene of M. tuberculosis. An M. tuberculosis shuttle cosmid library was transferred in Mycobacterium smegmatis and screened with a competitive enzyme-linked immunosorbent assay to detect the clones expressing the proteins. A clone containing a 40-kb DNA insert was selected, and by means of subcloning in Escherichia coli, a 2-kb fragment that coded for the molecules was identified. An open reading frame in the 2,061-nucleotide sequence codes for a secreted protein with a consensus signal peptide of 39 amino acids and a predicted molecular mass of 28,779 Da. The gene was referred to as apa because of the high percentages of proline (21.7%) and alanine (19%) in the purified protein. Southern hybridization analysis of digested total genomic DNA from M. tuberculosis (reference strains H37Rv and H37Ra) indicated that the apa gene was present as a single copy on the genome. The N-terminal identity or homology of the M. tuberculosis and M. bovis BCG purified molecules and their similar global and deduced amino acid compositions demonstrated the perfect correspondence between the molecular and chemical analyses. The presence of a high percentage of proline (21.7%) was confirmed and explained the apparent higher molecular mass (45/47 kDa) determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis resulting from the increased rigidity of molecules due to proline residues.(ABSTRACT TRUNCATED AT 400 WORDS)

Neuropharmacology of performance monitoring.

PubMed

Jocham, Gerhard; Ullsperger, Markus

2009-01-01

Adaptive, goal-directed behavior requires that organisms evaluate their actions in terms of their outcomes. Neuroimaging studies show that unfavorable outcomes or situations with high level of conflict engage the posterior medial frontal cortex (pMFC). Recording of event-related potentials revealed that these situations are accompanied by a negative deflection, the so-called error-related negativity (ERN), which appears after an erroneous response or after negative feedback. Both activation of the pMFC and the ERN are thought to represent a signal that indicates the need for behavioral adjustment, and to recruit other brain regions that implement these adjustments. While many fMRI and EEG studies have shed light on the anatomical structures and the cognitive processes involved in performance monitoring, only very recently have researchers begun to investigate the underlying neurochemical mechanisms. Drawing on the putative involvement of dopamine (DA) neurons in coding a reward prediction error, an influential theory has ascribed a pivotal role to DA in performance monitoring. However, although important, DA is certainly not the only neuromodulator involved. Recent studies point to a role for serotonin, norepinephrine and GABA, but also for adenosine in performance monitoring. Here, we review the evidence for neurotransmitter effects on this function in humans. In this light, we critically discuss currently debated models of performance monitoring and potential alternatives.

Neuroimaging of the Dopamine/Reward System in Adolescent Drug Use

PubMed Central

Ernst, Monique; Luciana, Monica

2015-01-01

Adolescence is characterized by heightened risk-taking, including substance misuse. These behavioral patterns are influenced by ontogenic changes in neurotransmitter systems, particularly the dopamine system, which is fundamentally involved in the neural coding of reward and motivated approach behavior. During adolescence, this system evidences a peak in activity. At the same time, the dopamine system is neuroplastically altered by substance abuse, impacting subsequent function. Here, we describe properties of the dopamine system that change with typical adolescent development and that are altered with substance abuse. Much of this work has been gleaned from animal models due to limitations in measuring dopamine in pediatric samples. Structural and functional neuroimaging techniques have been used to examine structures that are heavily DA-innervated; they measure morphological and functional changes with age and with drug exposure. Presenting marijuana abuse as an exemplar, we consider recent findings that support an adolescent peak in DA-driven reward-seeking behavior and related deviations in motivational systems that are associated with marijuana abuse/dependence. Clinicians are advised that (1) chronic adolescent marijuana use may lead to deficiencies in incentive motivation, (2) that this state is due to marijuana’s interactions with the developing DA system, and (3) that treatment strategies should be directed to remediating resultant deficiencies in goal-directed activity. PMID:26095977

Health service use in a population covered by the Estratégia de Saúde da Família (Family Health Strategy).

PubMed

Fernandes, Léia Cristiane L; Bertoldi, Andréa D; Barros, Aluísio J D

2009-08-01

To analyze health service use patterns in communities covered by the Estratégia de Saúde da Família (Family Health Strategy). Population-based cross-sectional study with a sample of 2,988 individuals, of all ages, living in areas covered by the Estratégia de Saúde da Família, in the city of Porto Alegre, Southern Brazil, between July and September 2003. Pre-coded questionnaires about demographic, socioeconomic and health information were applied to all residents of selected households. Prevalence ratios and 95% confidence intervals were calculated and chi-square tests were applied in the analyses. Poisson regression was used in the multivariable analysis to control for potential confounding factors. Females, persons aged 60 years or older, white, with better socioeconomic level, without health care plan coverage and with poor health self-perception were more likely to use the local family health unit. Regarding users of other health services, a similar pattern for sex, age and health self-perception was observed. However, greater use was found among people with better socioeconomic level and with health care plan coverage. Use of a local family health unit was greater among people from a lower socioeconomic level and without health care plan coverage, revealing the poorer individuals to be the priority of governmental actions. Model changes made to health care with the implementation of the Estratégia Saúde da Família tend to progressively improve the health conditions of the poorer population, with consequent reduction of health inequalities.

Decision aid use during post-biopsy consultations for localized prostate cancer.

PubMed

Holmes-Rovner, Margaret; Srikanth, Akshay; Henry, Stephen G; Langford, Aisha; Rovner, David R; Fagerlin, Angela

2018-02-01

Decision Aids (DAs) effectively translate medical evidence for patients but are not routinely used in clinical practice. Little is known about how DAs are used during patient-clinician encounters. To characterize the content and communicative function of high-quality DAs during diagnostic clinic visits for prostate cancer. 252 men newly diagnosed with localized prostate cancer who had received a DA, 45 treating physicians at 4 US Veterans Administration urology clinics. Qualitative analysis of transcribed audio recordings was used to inductively develop categories capturing content and function of all direct references to DAs (booklet talk). The presence or absence of any booklet talk per transcript was also calculated. Booklet talk occurred in 55% of transcripts. Content focused on surgical procedures (36%); treatment choice (22%); and clarifying risk classification (17%). The most common function of booklet talk was patient corroboration of physicians' explanations (42%), followed by either physician or patient acknowledgement that the patient had the booklet. Codes reflected the absence of DA use for shared decision-making. In regression analysis, predictors of booklet talk were fewer years of patient education (P = .027) and more time in the encounter (P = .027). Patient race, DA type, time reading the DA, physician informing quality and physician age did not predict booklet talk. Results show that good decision aids, systematically provided to patients, appeared to function not to open up deliberations about how to balance benefits and harms of competing treatments, but rather to allow patients to ask narrow technical questions about recommended treatments. © 2017 The Authors Health Expectations Published by John Wiley & Sons Ltd.

Men's interpretations of graphical information in a videotape decision aid 1

PubMed Central

Pylar, Jan; Wills, Celia E.; Lillie, Janet; Rovner, David R.; Kelly‐Blake, Karen; Holmes‐Rovner, Margaret

2007-01-01

Abstract Objective  To examine men's interpretations of graphical information types viewed in a high‐quality, previously tested videotape decision aid (DA). Setting, participants, design  A community‐dwelling sample of men >50 years of age (N = 188) balanced by education (college/non‐college) and race (Black/White) were interviewed just following their viewing of a videotape DA. A descriptive study design was used to examine men's interpretations of a representative sample of the types of graphs that were shown in the benign prostatic hyperplasia videotape DA. Main variables studied  Men provided their interpretation of graphs information presented in three formats that varied in complexity: pictograph, line and horizontal bar graph. Audiotape transcripts of men's responses were coded for meaning and content‐related interpretation statements. Results  Men provided both meaning and content‐focused interpretations of the graphs. Accuracy of interpretation was lower than hypothesized on the basis of literature review (85.4% for pictograph, 65.7% for line graph, 47.8% for horizontal bar graph). Accuracy for pictograph and line graphs was associated with education level,  = 3.94, P = 0.047, and  = 7.55, P = 0.006, respectively. Accuracy was uncorrelated with men's reported liking of the graphs,  = 2.00, P = 0.441. Conclusion  While men generally liked the DA, accuracy of graphs interpretation was associated with format complexity and education level. Graphs are often recommended to improve comprehension of information in DAs. However, additional evaluation is needed in experimental and naturalistic observational settings to develop best practice standards for data representation. PMID:17524011

VizieR Online Data Catalog: NLTE spectral analysis of white dwarf G191-B2B (Rauch+, 2013)

NASA Astrophysics Data System (ADS)

Rauch, T.; Werner, K.; Bohlin, R.; Kruk, J. W.

2013-08-01

In the framework of the Virtual Observatory, the German Astrophysical Virtual Observatory developed the registered service TheoSSA. It provides easy access to stellar spectral energy distributions (SEDs) and is intended to ingest SEDs calculated by any model-atmosphere code. In case of the DA white dwarf G191-B2B, we demonstrate that the model reproduces not only its overall continuum shape but also the numerous metal lines exhibited in its ultraviolet spectrum. (3 data files).

Avian sarcoma virus 17 carries the jun oncogene.

PubMed Central

Maki, Y; Bos, T J; Davis, C; Starbuck, M; Vogt, P K

1987-01-01

Biologically active molecular clones of avian sarcoma virus 17 (ASV 17) contain a replication-defective proviral genome of 3.5 kilobases (kb). The genome retains partial gag and env sequences, which flank a cell-derived putative oncogene of 0.93 kb, termed jun. The jun gene lacks preserved coding domains of tyrosine-specific protein kinases. It also shows no significant nucleic acid homology with other known oncogenes. The probable transformation-specific protein in ASV 17-transformed cells is a 55-kDa gag-jun fusion product. Images PMID:3033666

Dust Cloud Modeling and Propagation Effects for Radar and Communications Codes

DTIC Science & Technology

1978-11-01

particles can be described by a power law probabi 1it Y d i st r i ut i on with a power exponent of 4. Four is a typical value for dust particlIs from...loose unconsolidated soils such as desert alluviun, blust ,eera ted from a nuclear cratering explosion in rock and cohes ive soil s haN pO,,e r exponent ...da p = power law exponent amin = minimum particle diameter in the distribution (cm) a = maximum particle diameter in the distribution (cm).max The log

Civilian Availability Model.

DTIC Science & Technology

1991-07-01

23 Accession For NTIS GRA&I / DTIC TAB Unannounced El Justificatio By-- _DI!A; tr 1tit Ion/ Av~h-.b111ty Codes Avrail and/or Dist p.Cq FIGURES Figure...N3 :EGM.ENTATION1 EN T;;Y ~MSTA NZ AP ZS S 7’-’AT E S A’ POTENTIAL YATS I__ _ DATA INTEGRATED TRENCS AND0 DATA EC. -NIIIA E M T NC IC AT CPS DA TA 7...Coefficient ( TIC ). For an extended discussion of these three measures, refer to Appendix A of Stone, Looper, and McGarrity, 1989. The equation

A novel 53-kDa nodulin of the symbiosome membrane of soybean nodules, controlled by Bradyrhizobium japonicum.

PubMed

Winzer, T; Bairl, A; Linder, M; Linder, D; Werner, D; Müller, P

1999-03-01

A nodule-specific 53-kDa protein (GmNOD53b) of the symbiosome membrane from soybean was isolated and its LysC digestion products were microsequenced. cDNA clones of this novel nodulin, obtained from cDNA library screening with an RT-PCR (reverse-transcriptase polymerase chain reaction)-generated hybridization probe exhibited no homology to proteins identified so far. The expression of GmNOD53b coincides with the onset of nitrogen fixation. Therefore, it is a late nodulin. Among other changes, the GmNOD53b is significantly reduced in nodules infected with the Bradyrhizobium japonicum mutant 184 on the protein level as well as on the level of mRNA expression, compared with the wild-type infected nodules. The reduction of GmNOD53b mRNA is related to an inactivation of the sipF gene in B. japonicum 184, coding for a functionally active signal peptidase.

Characterization of a chitinolytic enzyme from Serratia sp. KCK isolated from kimchi juice.

PubMed

Kim, Hyun-Soo; Timmis, Kenneth N; Golyshin, Peter N

2007-07-01

The novel chitinolytic bacterium Serratia sp. KCK, which was isolated from kimchi juice, produced chitinase A. The gene coding for the chitinolytic enzyme was cloned on the basis of sequencing of internal peptides, homology search, and design of degenerated primers. The cloned open reading frame of chiA encodes for deduced polypeptide of 563 amino acid residues with a calculated molecular mass of 61 kDa and appears to correspond to a molecular mass of about 57 kDa, which excluded the signal sequence. The deduced amino acid sequence showed high similarity to those of bacterial chitinases classified as family 18 of glycosyl hydrolases. The chitinase A is an exochitinase and exhibits a greater pH range (5.0-10.0), thermostability with a temperature optimum of 40 degrees C, and substrate range other than Serratia chitinases thus far described. These results suggested that Serratia sp. KCK chitinase A can be used for biotechnological applications with good potential.

The first characterized asparaginase from a basidiomycete, Flammulina velutipes.

PubMed

Eisele, Nadine; Linke, Diana; Bitzer, Katrin; Na'amnieh, Shukry; Nimtz, Manfred; Berger, Ralf G

2011-02-01

Flammulina velutipes enjoys high popularity as an edible mushroom in Asian cuisines. Investigating the secretion of peptidases in nutrient media enriched with gluten, an enzyme was noticed that catalyzed the deamidation of L-asparagine and L-glutamine. The enzyme was purified to electrophoretic homogeneity by foaming and SEC. PAGE analysis revealed a protein of about 85 kDa with 13 kDa subunits indicating a hexameric protein. Degenerated primers were deduced from peptide fragments and the complete coding sequence of 372 bp was determined. The gene of Flammulina velutipes asparaginase (FvNase) over expressed in E. coli achieved an L-asparagine-hydrolyzing activity of 16 U/mL in crude extract, which was five times higher than its L-glutamine-hydrolyzing ability. The enzyme showed a pH-optimum at pH 7, remarkable tolerance towards elevated temperature and sodium chloride concentration in both the native and recombinant form, and no significant homology to any conserved domains of published asparaginases or glutaminases. Copyright © 2010 Elsevier Ltd. All rights reserved.

Purification and characterization of Phaseolus vulgaris alpha-D-galactosidase isozymes.

PubMed

Dhar, M; Mitra, M; Hata, J; Butnariu, O; Smith, D

1994-11-01

A highly purified preparation of alpha-D-galactosidase [E.C. 3.2.1.22] isozymes was obtained from Phaseolus vulgaris (pinto bean) seeds by extraction, salt precipitation, ion exchange, and affinity chromatography. The final preparation was homogeneous by SDS-PAGE but revealed isozymes of relative mass of 38.3 and 39.6 kDa. The N-terminal sequence for both isozymes was identical, LANGLAKT (one letter code for amino acids). Relative native molecular mass was estimated at 149.3 kDa by Sephacryl S-200 chromatography. Activity was unaffected by ionic strength at high enzyme concentrations, and was specific for alpha-D-galactoside conjugates. No protease or hemagglutinin activity was detected, and activity was stable at 4 degrees C. Studies with soluble oligosaccharides demonstrated high activity against the selected straight and branched-chain substrates. The enzyme was active against terminal alpha 1-3 galactosyl residues on human and rabbit erythrocyte membranes. Because of its activity against membrane glycoconjugates, these isozymes may have potential utility for modifying membrane epitopes on native erythrocytes.

Using Data Assimilation in Real-Time Hydrological Modeling of Groundwater and Stream Flow in Silkeborg, Denmark

NASA Astrophysics Data System (ADS)

He, X.; Kidmose, J.; Madsen, H.; Zheng, C.; Refsgaard, J. C.

2017-12-01

Climate adaptation strategies have nowadays been used more and more frequently in European cities, such as low impact development to increase infiltration and thus reduce the risk of urban flooding. An alternative approach to cope with the increased precipitation under the future climate condition is by using real-time management techniques to operate the drainage system. In the present study, we developed a real-time hydrological modeling system which can forecast both surface water and groundwater in the city of Silkeborg, Denmark. The model is based on MIKE SHE code, and operates on 50 × 50 m grid cell with hourly time step. Real-time observation data, i.e. groundwater head data from 35 wells and 4 stream flow gauging stations, are used in a data assimilation (DA) framework in order to correct bias in each calculation cell. The DA framework is based on ensemble Kalman filter (EnKF) where uncertainties from forcing data, model parameters as well as observations are taken into consideration. A case study has been carried out where the DA enabled MIKE SHE model was executed in conjunction with the rainfall products from the Danish Meteorological Institute: short term weather forecast coming from HIRLAM model with temporal resolution of 10 minutes and 8 hours lead time, and longer term forecast coming from HARMONIE model with temporal resolution of 1 hour and 48 hour lead time. The results show that DA can visibly increase the model performance for both groundwater head and stream discharge simulations. Even for the short period when observation data are not available (June 2016), the DA based model can still outperform the model without DA. In the forecasting mode, the simulated stream discharge is much more responsive to the increase of rainfall than groundwater as expected. The predicted and observed groundwater head in some areas only varies in the magnitude of a few centimeters, which does not have so much practical meaning in reality, whereas in other areas it could be as high as 1 m depending on the underlying geology.

Sport physiology, dopamine and nitric oxide - Some speculations and hypothesis generation.

PubMed

Landers, J G; Esch, Tobias

2015-12-01

Elite Spanish professional soccer players surprisingly showed a preponderance of an allele coding for nitric oxide synthase (NOS) that resulted in lower nitric oxide (NO) compared with Spanish endurance and power athletes and sedentary men. The present paper attempts a speculative explanation. Soccer is an "externally-paced" (EP) sport and team work dependent, requiring "executive function skills". We accept that time interval estimation skill is, in part, also an executive skill. Dopamine (DA) is prominent among the neurotransmitters with a role in such skills. Polymorphisms affecting dopamine (especially DRD2/ANKK1-Taq1a which leads to lower density of dopamine D2 receptors in the striatum, leading to increased striatal dopamine synthesis) and COMT val 158 met (which prolongs the action of dopamine in the cortex) feature both in the time interval estimation and the executive skills literatures. Our paper may be a pioneering attempt to stimulate empirical efforts to show how genotypes among soccer players may be connected via neurotransmitters to certain cognitive abilities that predict sporting success, perhaps also in some other externally-paced team sports. Graphing DA levels against time interval estimation accuracy and also against certain executive skills reveals an inverted-U relationship. A pathway from DA, via endogenous morphine and mu3 receptors on endothelia, to the generation of NO in tiny quantities has been demonstrated. Exercise up-regulates DA and this pathway. With somewhat excessive exercise, negative feedback from NO down-regulates DA, hypothetically keeping it near the peak of the inverted-U. Other research, not yet done on higher animals or humans, shows NO "fine-tuning" movement. We speculate that Caucasian men, playing soccer recreationally, would exemplify the above pattern and their nitric oxide synthase (NOS) would reflect the norm of their community, whereas professional players of soccer and perhaps other EP sports, with DA boosted by very frequent and intense practice and extra stress from public scrutiny, would potentially have their negative feedback system overwhelmed, were it not that many of them carry the C allele of the NOS3-786T/C polymorphism. Then, even very high DA would not result in so much NO as to shut the system down. We add some evolutionary speculations. Copyright © 2015 Elsevier Ltd. All rights reserved.

SLC6A3 coding variant Ala559Val found in two autism probands alters dopamine transporter function and trafficking.

PubMed

Bowton, E; Saunders, C; Reddy, I A; Campbell, N G; Hamilton, P J; Henry, L K; Coon, H; Sakrikar, D; Veenstra-VanderWeele, J M; Blakely, R D; Sutcliffe, J; Matthies, H J G; Erreger, K; Galli, A

2014-10-14

Emerging evidence associates dysfunction in the dopamine (DA) transporter (DAT) with the pathophysiology of autism spectrum disorder (ASD). The human DAT (hDAT; SLC6A3) rare variant with an Ala to Val substitution at amino acid 559 (hDAT A559V) was previously reported in individuals with bipolar disorder or attention-deficit hyperactivity disorder (ADHD). We have demonstrated that this variant is hyper-phosphorylated at the amino (N)-terminal serine (Ser) residues and promotes an anomalous DA efflux phenotype. Here, we report the novel identification of hDAT A559V in two unrelated ASD subjects and provide the first mechanistic description of its impaired trafficking phenotype. DAT surface expression is dynamically regulated by DAT substrates including the psychostimulant amphetamine (AMPH), which causes hDAT trafficking away from the plasma membrane. The integrity of DAT trafficking directly impacts DA transport capacity and therefore dopaminergic neurotransmission. Here, we show that hDAT A559V is resistant to AMPH-induced cell surface redistribution. This unique trafficking phenotype is conferred by altered protein kinase C β (PKCβ) activity. Cells expressing hDAT A559V exhibit constitutively elevated PKCβ activity, inhibition of which restores the AMPH-induced hDAT A559V membrane redistribution. Mechanistically, we link the inability of hDAT A559V to traffic in response to AMPH to the phosphorylation of the five most distal DAT N-terminal Ser. Mutation of these N-terminal Ser to Ala restores AMPH-induced trafficking. Furthermore, hDAT A559V has a diminished ability to transport AMPH, and therefore lacks AMPH-induced DA efflux. Pharmacological inhibition of PKCβ or Ser to Ala substitution in the hDAT A559V background restores AMPH-induced DA efflux while promoting intracellular AMPH accumulation. Although hDAT A559V is a rare variant, it has been found in multiple probands with neuropsychiatric disorders associated with imbalances in DA neurotransmission, including ADHD, bipolar disorder, and now ASD. These findings provide valuable insight into a new cellular phenotype (altered hDAT trafficking) supporting dysregulated DA function in these disorders. They also provide a novel potential target (PKCβ) for therapeutic interventions in individuals with ASD.

Identification and characterization of a serpin from Eimeria acervulina.

PubMed

Fetterer, R H; Miska, K B; Jenkins, M C; Barfield, R C; Lillehoj, H

2008-12-01

Serpins are serine protease inhibitors that are widely distributed in metazoans but have not been previously characterized in Eimeria spp. A serpin from Eimeria acervulina was cloned, expressed and characterized. Random screening of an E.acervulina sporozoite cDNA library identified a single clone (D14) whose coding region shared high similarity to consensus structure of serpins. Clone D14 contained an entire open reading frame (ORF) consisting of 1,245 nts that encode a peptide 413 amino acids in length with a predicted molecular weight of 45.5 kDa and containing a signal peptide 28 residues in length. By Western blot analysis, polyclonal antiserum to the recombinant serpin (rbSp) recognized a major 55 kDa protein band in unsporulated oocysts and in oocysts sporulated up to 24 hr (fully sporulated). The anti-rbSp detected bands of 55 kDa and 48 kDa in sporozoites (SZ) and merozoites (MZ) respectively. Analysis of MZ secretion products revealed a single protein of 48 kDa which may correspond to secreted serpin. By immuno-staining the serpin was located in granules distributed throughout both the SZ and MZ but granules appeared to be concentrated in the parasite's anterior. Analysis of the structure predicts that the E. acervulina serpin should be an active inhibitor. However, rbSp was without inhibitory activity against common serine proteases. By Western blot analysis the endogenous serpin in MZ extracts did not form the expected high molecular weight complex when coincubated with either trypsin or subtilisin. The results demonstrate that E. acervulina contains a serpin gene and expresses a protein with structural properties similar to an active serine protease inhibitor. Although the function of the E. acervulina serpin remains unknown the results further suggest that serpin is secreted by the parasite where it may be involved in cell invasion and other basic developmental processes.

Draft Genome Sequences of Two Bacillus thuringiensis Strains and Characterization of a Putative 41.9-kDa Insecticidal Toxin

PubMed Central

Palma, Leopoldo; Muñoz, Delia; Berry, Colin; Murillo, Jesús; Caballero, Primitivo

2014-01-01

In this work, we report the genome sequencing of two Bacillus thuringiensis strains using Illumina next-generation sequencing technology (NGS). Strain Hu4-2, toxic to many lepidopteran pest species and to some mosquitoes, encoded genes for two insecticidal crystal (Cry) proteins, cry1Ia and cry9Ea, and a vegetative insecticidal protein (Vip) gene, vip3Ca2. Strain Leapi01 contained genes coding for seven Cry proteins (cry1Aa, cry1Ca, cry1Da, cry2Ab, cry9Ea and two cry1Ia gene variants) and a vip3 gene (vip3Aa10). A putative novel insecticidal protein gene 1143 bp long was found in both strains, whose sequences exhibited 100% nucleotide identity. The predicted protein showed 57 and 100% pairwise identity to protein sequence 72 from a patented Bt strain (US8318900) and to a putative 41.9-kDa insecticidal toxin from Bacillus cereus, respectively. The 41.9-kDa protein, containing a C-terminal 6× HisTag fusion, was expressed in Escherichia coli and tested for the first time against four lepidopteran species (Mamestra brassicae, Ostrinia nubilalis, Spodoptera frugiperda and S. littoralis) and the green-peach aphid Myzus persicae at doses as high as 4.8 µg/cm2 and 1.5 mg/mL, respectively. At these protein concentrations, the recombinant 41.9-kDa protein caused no mortality or symptoms of impaired growth against any of the insects tested, suggesting that these species are outside the protein’s target range or that the protein may not, in fact, be toxic. While the use of the polymerase chain reaction has allowed a significant increase in the number of Bt insecticidal genes characterized to date, novel NGS technologies promise a much faster, cheaper and efficient screening of Bt pesticidal proteins. PMID:24784323

Oscilaciones estelares no-radiales: aplicación a configuraciones politrópicas y modelos de enanas blancas de He

NASA Astrophysics Data System (ADS)

Córsico, A. H.; Benvenuto, O. G.

Recently in our Observatory we have developed a new Stellar Pulsation Code, independently of other workers. Such program computes eigenvalues (eigenfrequencies) and eigenfunctions of non-radial modes in spherical non-perturbated stellar models. To accomplish this calculations, the four order eigenvalue problem (in the linear adiabatic approach) is solved by means of the well-know technique of Henyey on the finite differences scheme wich replace to the differential equations of the problem. In order to test the Code, we have computed numerous eigenmodes in polytropic configurations for several values of index n. In this comunication we show the excelent agreement of our results and that best available in the literature. Also, we present results of oscillations in models of white dwarf stars with homogeneus chemical composition (pure Helium). This models have been obtained with the Evolution Stellar Code of our Observatory. The calculations outlined above conform a first preliminary step in a major proyect whose main purpose is the study of pulsational properties of DA, DB and DO white dwarfs stars. Detailed investigations have demonstrated that such objets pulsates in non-radial g-modes with eigenperiods in the range 100-2000 sec.

Functional Coding Variation in Recombinant Inbred Mouse Lines Reveals Novel Serotonin Transporter-Associated Phenotypes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carneiro, Ana; Airey, David; Thompson, Brent

The human serotonin (5-hydroxytryptamine, 5-HT) transporter (hSERT, SLC6A4) figures prominently in the etiology or treatment of many prevalent neurobehavioral disorders including anxiety, alcoholism, depression, autism and obsessive-compulsive disorder (OCD). Here we utilize naturally occurring polymorphisms in recombinant inbred (RI) lines to identify novel phenotypes associated with altered SERT function. The widely used mouse strain C57BL/6J, harbors a SERT haplotype defined by two nonsynonymous coding variants (Gly39 and Lys152 (GK)). At these positions, many other mouse lines, including DBA/2J, encode Glu39 and Arg152 (ER haplotype), assignments found also in hSERT. Synaptosomal 5-HT transport studies revealed reduced uptake associated with the GKmore » variant. Heterologous expression studies confirmed a reduced SERT turnover rate for the GK variant. Experimental and in silico approaches using RI lines (C57Bl/6J X DBA/2J=BXD) identifies multiple anatomical, biochemical and behavioral phenotypes specifically impacted by GK/ER variation. Among our findings are multiple traits associated with anxiety and alcohol consumption, as well as of the control of dopamine (DA) signaling. Further bioinformatic analysis of BXD phenotypes, combined with biochemical evaluation of SERT knockout mice, nominates SERT-dependent 5-HT signaling as a major determinant of midbrain iron homeostasis that, in turn, dictates ironregulated DA phenotypes. Our studies provide a novel example of the power of coordinated in vitro, in vivo and in silico approaches using murine RI lines to elucidate and quantify the system-level impact of gene variation.« less

Detection of Multiple Budding Yeast Cells and a Partial Sequence of 43-kDa Glycoprotein Coding Gene of Paracoccidioides brasiliensis from a Case of Lacaziosis in a Female Pacific White-Sided Dolphin (Lagenorhynchus obliquidens).

PubMed

Minakawa, Tomoko; Ueda, Keiichi; Tanaka, Miyuu; Tanaka, Natsuki; Kuwamura, Mitsuru; Izawa, Takeshi; Konno, Toshihiro; Yamate, Jyoji; Itano, Eiko Nakagawa; Sano, Ayako; Wada, Shinpei

2016-08-01

Lacaziosis, formerly called as lobomycosis, is a zoonotic mycosis, caused by Lacazia loboi, found in humans and dolphins, and is endemic in the countries on the Atlantic Ocean, Indian Ocean and Pacific Ocean of Japanese coast. Susceptible Cetacean species include the bottlenose dolphin (Tursiops truncatus), the Indian Ocean bottlenose dolphin (T. aduncus), and the estuarine dolphin (Sotalia guianensis); however, no cases have been recorded in other Cetacean species. We diagnosed a case of Lacaziosis in a Pacific white-sided dolphin (Lagenorhynchus obliquidens) nursing in an aquarium in Japan. The dolphin was a female estimated to be more than 14 years old at the end of June 2015 and was captured in a coast of Japan Sea in 2001. Multiple, lobose, and solid granulomatous lesions with or without ulcers appeared on her jaw, back, flipper and fluke skin, in July 2014. The granulomatous skin lesions from the present case were similar to those of our previous cases. Multiple budding and chains of round yeast cells were detected in the biopsied samples. The partial sequence of 43-kDa glycoprotein coding gene confirmed by a nested PCR and sequencing, which revealed a different genotype from both Amazonian and Japanese lacaziosis in bottlenose dolphins, and was 99 % identical to those derived from Paracoccidioides brasiliensis; a sister fungal species to L. loboi. This is the first case of lacaziosis in Pacific white-sided dolphin.

Prunus necrotic ringspot ilarvirus: nucleotide sequence of RNA3 and the relationship to other ilarviruses based on coat protein comparison.

PubMed

Guo, D; Maiss, E; Adam, G; Casper, R

1995-05-01

The RNA3 of prunus necrotic ringspot ilarvirus (PNRSV) has been cloned and its entire sequence determined. The RNA3 consists of 1943 nucleotides (nt) and possesses two large open reading frames (ORFs) separated by an intergenic region of 74 nt. The 5' proximal ORF is 855 nt in length and codes for a protein of molecular mass 31.4 kDa which has homologies with the putative movement protein of other members of the Bromoviridae. The 3' proximal ORF of 675 nt is the cistron for the coat protein (CP) and has a predicted molecular mass of 24.9 kDa. The sequence of the 3' non-coding region (NCR) of PNRSV RNA3 showed a high degree of similarity with those of tobacco streak virus (TSV), prune dwarf virus (PDV), apple mosaic virus (ApMV) and also alfalfa mosaic virus (AIMV). In addition it contained potential stem-loop structures with interspersed AUGC motifs characteristic for ilar- and alfamoviruses. This conserved primary and secondary structure in all 3' NCRs may be responsible for the interaction with homologous and heterologous CPs and subsequent activation of genome replication. The CP gene of an ApMV isolate (ApMV-G) of 657 nt has also been cloned and sequenced. Although ApMV and PNRSV have a distant serological relationship, the deduced amino acid sequences of their CPs have an identity of only 51.8%. The N termini of PNRSV and ApMV CPs have in common a zinc-finger motif and the potential to form an amphipathic helix.

Significance of ITER IWS Material Selection and Qualification

NASA Astrophysics Data System (ADS)

Mehta, Bhoomi K.; Raval, Jigar; Maheshwari, Abha; Laad, Rahul; Singh, Gurlovleen; Pathak, Haresh

2017-04-01

In-Wall Shielding (IWS) is one of the important components of ITER Vacuum Vessel (VV) which fills the space between double walls of VV with cooling water. Procurement Arrangement (PA) for IWS has been signed with Indian Domestic Agency (INDA). Procurement of IWS materials, fabrication of IWS blocks and its delivery to respective Domestic Agency (DA) and ITER Organization (IO) are the main scope of this PA. Hence, INDIA is the only country which is contributing to VV IWS among all seven ITER partners. The main functions of the IWS are to provide Neutron Shielding with blanket, VV shells and water during plasma operations and to reduce ripple of the Toroidal Magnetic Field. To meet these functional requirements IWS blocks are made up of special materials (Borated Steels SS304 B4 & SS304 B7, Ferritic Steels SS 430, Austenitic Steel SS 316 L (N)-IG, XM-19 and Inconel-625) which are qualified, reliable and traceable for the design assessment. The choice of these materials has a significant influence on performance, maintainability, licensing, detailed design parameters and waste disposal. The main reasons for the materials selected for IWS are its high mechanical strength at operating temperatures, water chemistry properties, excellent fabrication characteristics and low cost relative to other similar materials. All the materials are qualified with respect to their respective codes (ASTM/EN standards with additional requirements as described in RCC-MR code 2007) and ITER requirements. Agreed Notified Body (ANB) has control conformity of materials certificates with approved material specification and traceability procedure for Safety Important Component (SIC). The procurement strategy for all the IWS materials has been developed in close collaboration with IO, ANB and Industries as per Product Procurement Specification (PPS). The R&D for sample, bulk material production, testing, inspection and handling as required are carried out by IN DA and IO. At present almost all IWS materials (∼2500 Tons) has been procured by IN DA with spares to manufacture ∼9000 IWS blocks. This paper summarizes IWS material selection, qualification and procurement processes in detail.

Potential aetiologies and prognostic implications of worsening renal function in acute decompensated heart failure.

PubMed

Abo-Salem, Elsayed; Sherif, Khalid; Dunlap, Stephanie; Prabhakar, Sharma

2014-12-01

One third of patients hospitalized for acute decompensated heart failure (ADHF) develop a worsening renal function (WRF) that is associated with increased in-hospital morbidity and mortality. However, previous investigations have not evaluated the various etiologies of WRF and its impact on prognosis. A retrospective chart review was performed of patients admitted with ADHF who had a rise of serum creatinine ≥ 0.3 mg/dl on admission or during their hospital stay. The chart notes were reviewed for the suggested etiology of WRF. Cases were defined as ADHF associated WRF (ADHF-WRF) when there was no other explanation for WRF, plus an objective evidence of hypervolemia. Cases with WRF after 48 hours of a negative fluid balance were classified as diuresis-associated WRF (DA-WRF). ICD-9 codes identified 319 admissions with ADHF complicated with WRF. Fifty admissions were excluded. The most common causes of WRF were ADHF-WRF (43.1%) and DA-WRF (42.8%). Other causes included nephrotoxins (5.9%) and surgery (3.7%). The mortality rate was significantly lower with DA-WRF compared to ADHF-WRF; odds ratio 0.059 (95% CI 0.007 to 0.45, P = 0.006). Readmission at 30 days was higher in cases with ADHF-WRF (42%). WRF with ADHF is a heterogeneous group, and cases with ADHF-WRF had a higher in-hospital mortality and readmission rates.

Categorical speech processing in Broca's area: an fMRI study using multivariate pattern-based analysis.

PubMed

Lee, Yune-Sang; Turkeltaub, Peter; Granger, Richard; Raizada, Rajeev D S

2012-03-14

Although much effort has been directed toward understanding the neural basis of speech processing, the neural processes involved in the categorical perception of speech have been relatively less studied, and many questions remain open. In this functional magnetic resonance imaging (fMRI) study, we probed the cortical regions mediating categorical speech perception using an advanced brain-mapping technique, whole-brain multivariate pattern-based analysis (MVPA). Normal healthy human subjects (native English speakers) were scanned while they listened to 10 consonant-vowel syllables along the /ba/-/da/ continuum. Outside of the scanner, individuals' own category boundaries were measured to divide the fMRI data into /ba/ and /da/ conditions per subject. The whole-brain MVPA revealed that Broca's area and the left pre-supplementary motor area evoked distinct neural activity patterns between the two perceptual categories (/ba/ vs /da/). Broca's area was also found when the same analysis was applied to another dataset (Raizada and Poldrack, 2007), which previously yielded the supramarginal gyrus using a univariate adaptation-fMRI paradigm. The consistent MVPA findings from two independent datasets strongly indicate that Broca's area participates in categorical speech perception, with a possible role of translating speech signals into articulatory codes. The difference in results between univariate and multivariate pattern-based analyses of the same data suggest that processes in different cortical areas along the dorsal speech perception stream are distributed on different spatial scales.

Octopamine and Dopamine differentially modulate the nicotine-induced calcium response in Drosophila Mushroom Body Kenyon Cells.

PubMed

Leyton, V; Goles, N I; Fuenzalida-Uribe, N; Campusano, J M

2014-02-07

In Drosophila associative olfactory learning, an odor, the conditioned stimulus (CS), is paired to an unconditioned stimulus (US). The CS and US information arrive at the Mushroom Bodies (MB), a Drosophila brain region that processes the information to generate new memories. It has been shown that olfactory information is conveyed through cholinergic inputs that activate nicotinic acetylcholine receptors (nAChRs) in the MB, while the US is coded by biogenic amine (BA) systems that innervate the MB. In this regard, the MB acts as a coincidence detector. A better understanding of the properties of the responses gated by nicotinic and BA receptors is required to get insights on the cellular and molecular mechanisms responsible for memory formation. In recent years, information has become available on the properties of the responses induced by nAChR activation in Kenyon Cells (KCs), the main neuronal MB population. However, very little information exists on the responses induced by aminergic systems in fly MB. Here we have evaluated some of the properties of the calcium responses gated by Dopamine (DA) and Octopamine (Oct) in identified KCs in culture. We report that exposure to BAs induces a fast but rather modest increase in intracellular calcium levels in cultured KCs. The responses to Oct and DA are fully blocked by a VGCC blocker, while they are differentially modulated by cAMP. Moreover, co-application of BAs and nicotine has different effects on intracellular calcium levels: while DA and nicotine effects are additive, Oct and nicotine induce a synergistic increase in calcium levels. These results suggest that a differential modulation of nicotine-induced calcium increase by DA and Oct could contribute to the events leading to learning and memory in flies. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

Development and Implementation of Dynamic Scripts to Execute Cycled GSI/WRF Forecasts

NASA Technical Reports Server (NTRS)

Zavodsky, Bradley; Srikishen, Jayanthi; Berndt, Emily; Li, Xuanli; Watson, Leela

2014-01-01

The Weather Research and Forecasting (WRF) numerical weather prediction (NWP) model and Gridpoint Statistical Interpolation (GSI) data assimilation (DA) are the operational systems that make up the North American Mesoscale (NAM) model and the NAM Data Assimilation System (NDAS) analysis used by National Weather Service forecasters. The Developmental Testbed Center (DTC) manages and distributes the code for the WRF and GSI, but it is up to individual researchers to link the systems together and write scripts to run the systems, which can take considerable time for those not familiar with the code. The objective of this project is to develop and disseminate a set of dynamic scripts that mimic the unique cycling configuration of the operational NAM to enable researchers to develop new modeling and data assimilation techniques that can be easily transferred to operations. The current version of the SPoRT GSI/WRF Scripts (v3.0.1) is compatible with WRF v3.3 and GSI v3.0.

Cloning and sequence analysis of Hemonchus contortus HC58cDNA.

PubMed

Muleke, Charles I; Ruofeng, Yan; Lixin, Xu; Xinwen, Bo; Xiangrui, Li

2007-06-01

The complete coding sequence of Hemonchus contortus HC58cDNA was generated by rapid amplification of cDNA ends and polymerase chain reaction using primers based on the 5' and 3' ends of the parasite mRNA, accession no. AF305964. The HC58cDNA gene was 851 bp long, with open reading frame of 717 bp, precursors to 239 amino acids coding for approximately 27 kDa protein. Analysis of amino acid sequence revealed conserved residues of cysteine, histidine, asparagine, occluding loop pattern, hemoglobinase motif and glutamine of the oxyanion hole characteristic of cathepsin B like proteases (CBL). Comparison of the predicted amino acid sequences showed the protein shared 33.5-58.7% identity to cathepsin B homologues in the papain clan CA family (family C1). Phylogenetic analysis revealed close evolutionary proximity of the protein sequence to counterpart sequences in the CBL, suggesting that HC58cDNA was a member of the papain family.

Molecular cloning, structural analysis, and expression in Escherichia coli of a chitinase gene from Enterobacter agglomerans.

PubMed Central

Chernin, L S; De la Fuente, L; Sobolev, V; Haran, S; Vorgias, C E; Oppenheim, A B; Chet, I

1997-01-01

The gene chiA, which codes for endochitinase, was cloned from a soilborne Enterobacter agglomerans. Its complete sequence was determined, and the deduced amino acid sequence of the enzyme designated Chia_Entag yielded an open reading frame coding for 562 amino acids of a 61-kDa precursor protein with a putative leader peptide at its N terminus. The nucleotide and polypeptide sequences of Chia_Entag showed 86.8 and 87.7% identity with the corresponding gene and enzyme, Chia_Serma, of Serratia marcescens, respectively. Homology modeling of Chia_Entag's three-dimensional structure demonstrated that most amino acid substitutions are at solvent-accessible sites. Escherichia coli JM109 carrying the E. agglomerans chiA gene produced and secreted Chia_Entag. The antifungal activity of the secreted endochitinase was demonstrated in vitro by inhibition of Fusarium oxysporum spore germination. The transformed strain inhibited Rhizoctonia solani growth on plates and the root rot disease caused by this fungus in cotton seedlings under greenhouse conditions. PMID:9055404

Molecular cloning of metaphase chromosome protein 1 (MCP1), a novel human autoantigen that associates with condensed chromosomes during mitosis.

PubMed

Bronze-da-Rocha, E; Catita, J A; Sunkel, C E

1998-02-01

Systemic lupus erythematosus autoantibodies were used to identify and to characterize new human chromosome-associated proteins. Previous immunolocalization studies in human and murine tissue culture cells showed that some of these monoclonal antibodies recognize nuclear antigens that associate with condensed chromosomes during mitosis. One antibody was selected for screening a human HeLa S3 cDNA expression library, and cDNAs that code for an antigen of 31-33 kDa were isolated. Immunological, biochemical and cell fractionation data indicate that the 31- to 33-kDa antigen corresponds to the chromosome-associated protein recognized by the original monoclonal antibody. Sequence analysis shows that we isolated a novel human gene. Immunolocalization to human tissue culture cells shows that during interphase the antigen is dispersed in the nucleus and that during mitosis it associates exclusively with condensed chromosomes. A similar pattern of localization was also observed in mouse fibroblasts, suggesting that the antigen is conserved among different species. Finally, we show that part of the antigen remains bound to the scaffold/matrix component, even after high salt extraction.

Molecular cloning of a cDNA coding for GTP cyclohydrolase I from Dictyostelium discoideum.

PubMed Central

Witter, K; Cahill, D J; Werner, T; Ziegler, I; Rödl, W; Bacher, A; Gütlich, M

1996-01-01

The GTP cyclohydrolase I (GTP-CH) gene of the cellular slime mould Dictyostelium discoideum has been cloned and sequenced. The 855 bp cDNA of this gene contains the open reading frame (ORF) encoding 232 amino acids with a predicted molecular mass of approx. 26 kDa. Southern blot analysis indicated the presence of a single gene for GTP-CH in Dictyostelium. PCR amplification of the ORF from chromosomal DNA and sequencing showed the existence of a 101 bp intron in the GTP-CH gene of Dictyostelium discoideum. The amino acid sequence has 47% and 49% positional identity to those of the human and yeast enzymes respectively. Most of the sequence variation between species is located in the N-terminal part of the protein. The overall identity with the E. coli protein is markedly lower. The enzyme was expressed in E. coli and purified as a 68 kDa fusion protein with the maltose-binding protein of E. coli. GTP-CH of Dictyostelium is heat-stable and showed maximal activity at 60 degrees C. The Km value for GTP is 50 microM. PMID:8870645

Cloning, Sequencing, and Role in Virulence of Two Phospholipases (A1 and C) from Mesophilic Aeromonas sp. Serogroup O:34

PubMed Central

Merino, Susana; Aguilar, Alicia; Nogueras, Maria Mercedes; Regue, Miguel; Swift, Simon; Tomás, Juan M.

1999-01-01

Two different representative recombinant clones encoding Aeromonas hydrophila lipases were found upon screening on tributyrin (phospholipase A1) and egg yolk agar (lecithinase-phospholipase C) plates of a cosmid-based genomic library of Aeromonas hydrophila AH-3 (serogroup O34) introduced into Escherichia coli DH5α. Subcloning, nucleotide sequencing, and in vitro-coupled transcription-translation experiments showed that the phospholipase A1 (pla) and C (plc) genes code for an 83-kDa putative lipoprotein and a 65-kDa protein, respectively. Defined insertion mutants of A. hydrophila AH-3 defective in either pla or plc genes were defective in phospholipase A1 and C activities, respectively. Lecithinase (phospholipase C) was shown to be cytotoxic but nonhemolytic or poorly hemolytic. A. hydrophila AH-3 plc mutants showed a more than 10-fold increase in their 50% lethal dose on fish and mice, and complementation of the plc single gene on these mutants abolished this effect, suggesting that Plc protein is a virulence factor in the mesophilic Aeromonas sp. serogroup O:34 infection process. PMID:10417167

Reward and Aversion.

PubMed

Hu, Hailan

2016-07-08

To benefit from opportunities and cope with challenges in the environment, animals must adapt their behavior to acquire rewards and to avoid punishments. Maladaptive changes in the neuromodulatory systems and neural circuits for reward and aversion can lead to manifestation of several prominent psychiatric disorders including addiction and depression. Recent progress is pushing the boundaries of knowledge on two major fronts in research on reward and aversion: First, new layers of complexity have been reported on the functions of dopamine (DA) and serotonin (5-HT) neuromodulatory systems in reward and aversion. Second, specific circuit components in the neural pathways that encode reward and aversion have begun to be identified. This review aims to outline historic perspectives and new insights into the functions of DA and 5-HT systems in coding the distinct components of rewards. It also highlights recent advances in neural circuit studies enabled by new technologies, such as cell-type-specific electrophysiology and tracing, and optogenetics-based behavioral manipulation. This knowledge may provide guidance for developing novel treatment strategies for neuropsychiatric diseases related to the malfunction of the reward system.

Impact cratering calculations

NASA Technical Reports Server (NTRS)

Ahrens, Thomas J.; Okeefe, J. D.; Smither, C.; Takata, T.

1991-01-01

In the course of carrying out finite difference calculations, it was discovered that for large craters, a previously unrecognized type of crater (diameter) growth occurred which was called lip wave propagation. This type of growth is illustrated for an impact of a 1000 km (2a) silicate bolide at 12 km/sec (U) onto a silicate half-space at earth gravity (1 g). The von Misses crustal strength is 2.4 kbar. The motion at the crater lip associated with this wave type phenomena is up, outward, and then down, similar to the particle motion of a surface wave. It is shown that the crater diameter has grown d/a of approximately 25 to d/a of approximately 4 via lip propagation from Ut/a = 5.56 to 17.0 during the time when rebound occurs. A new code is being used to study partitioning of energy and momentum and cratering efficiency with self gravity for finite-sized objects rather than the previously discussed planetary half-space problems. These are important and fundamental subjects which can be addressed with smoothed particle hydrodynamic (SPH) codes. The SPH method was used to model various problems in astrophysics and planetary physics. The initial work demonstrates that the energy budget for normal and oblique impacts are distinctly different than earlier calculations for silicate projectile impact on a silicate half space. Motivated by the first striking radar images of Venus obtained by Magellan, the effect of the atmosphere on impact cratering was studied. In order the further quantify the processes of meteor break-up and trajectory scattering upon break-up, the reentry physics of meteors striking Venus' atmosphere versus that of the Earth were studied.

Cell cycle dependent intracellular distribution of two spliced isoforms of TCP/ILF3 proteins.

PubMed

Xu, You Hai; Leonova, Tatyana; Grabowski, Gregory A

2003-12-01

TCP80 is an approximately 80kDa mammalian cytoplasmic protein that binds to a set of mRNAs and inhibits their translation in vitro and ex vivo. This protein has high sequence similarity to interleukin-2 enhancer-binding factors (NF90/ILF3) and the M-phase phosphoprotein (MPP4)/DRBP76. A 110kDa immunologic isoform of TCP80/NF90/MPP4/DRBP76, termed TCP110, also is present in cytoplasm and nuclei of many types of cells. A cDNA sequence coding for TCP110 was derived by 5(')RACE. The TCP110 sequence is identical to ILF3. The gene coding for TCP110/ILF3 mapped to human chromosome 19 and the gene organization was analyzed using TCP80 and TCP110/ILF3 cDNA sequences. The TCP/ILF3 gene spans >34.8kb and contains 21 exons. At least one alternatively spliced product involving exons 19-21 exists and predicts the formation of either TCP80 or TCP110/ILF3. However, the functional relationships of TCP80 and TCP110/ILF3 required elucidation. The metabolic turnover rates and subcellular distribution of TCP80 and TCP110/ILF3 during the cell cycle showed TCP80 to be relatively stable (t(1/2)=5 days) in the cytoplasmic compartment. In comparison, TCP110/ILF3 migrated between the cytoplasmic and nuclear compartments during the cell cycle. The TCP110 C-terminal segment contains an additional nuclear localizing signal that plays a role in its nuclear translocation. This study indicates that the multiple cellular functions, i.e., translation control, interleukin-2 enhancer binding, or cell division, of TCP/ILF3 are fulfilled by alternatively spliced isoforms.

Context-sensitive trace inlining for Java.

PubMed

Häubl, Christian; Wimmer, Christian; Mössenböck, Hanspeter

2013-12-01

Method inlining is one of the most important optimizations in method-based just-in-time (JIT) compilers. It widens the compilation scope and therefore allows optimizing multiple methods as a whole, which increases the performance. However, if method inlining is used too frequently, the compilation time increases and too much machine code is generated. This has negative effects on the performance. Trace-based JIT compilers only compile frequently executed paths, so-called traces, instead of whole methods. This may result in faster compilation, less generated machine code, and better optimized machine code. In the previous work, we implemented a trace recording infrastructure and a trace-based compiler for [Formula: see text], by modifying the Java HotSpot VM. Based on this work, we evaluate the effect of trace inlining on the performance and the amount of generated machine code. Trace inlining has several major advantages when compared to method inlining. First, trace inlining is more selective than method inlining, because only frequently executed paths are inlined. Second, the recorded traces may capture information about virtual calls, which simplify inlining. A third advantage is that trace information is context sensitive so that different method parts can be inlined depending on the specific call site. These advantages allow more aggressive inlining while the amount of generated machine code is still reasonable. We evaluate several inlining heuristics on the benchmark suites DaCapo 9.12 Bach, SPECjbb2005, and SPECjvm2008 and show that our trace-based compiler achieves an up to 51% higher peak performance than the method-based Java HotSpot client compiler. Furthermore, we show that the large compilation scope of our trace-based compiler has a positive effect on other compiler optimizations such as constant folding or null check elimination.

The virtual observatory service TheoSSA: Establishing a database of synthetic stellar flux standards. I. NLTE spectral analysis of the DA-type white dwarf G191-B2B

NASA Astrophysics Data System (ADS)

Rauch, T.; Werner, K.; Bohlin, R.; Kruk, J. W.

2013-12-01

Context. Hydrogen-rich, DA-type white dwarfs are particularly suited as primary standard stars for flux calibration. State-of-the-art NLTE models consider opacities of species up to trans-iron elements and provide reliable synthetic stellar-atmosphere spectra to compare with observations. Aims: We will establish a database of theoretical spectra of stellar flux standards that are easily accessible via a web interface. Methods: In the framework of the Virtual Observatory, the German Astrophysical Virtual Observatory developed the registered service TheoSSA. It provides easy access to stellar spectral energy distributions (SEDs) and is intended to ingest SEDs calculated by any model-atmosphere code. In case of the DA white dwarf G191-B2B, we demonstrate that the model reproduces not only its overall continuum shape but also the numerous metal lines exhibited in its ultraviolet spectrum. Results: TheoSSA is in operation and contains presently a variety of SEDs for DA-type white dwarfs. It will be extended in the near future and can host SEDs of all primary and secondary flux standards. The spectral analysis of G191-B2B has shown that our hydrostatic models reproduce the observations best at and log g = 7.60 ± 0.05. We newly identified Fe vi, Ni vi, and Zn iv lines. For the first time, we determined the photospheric zinc abundance with a logarithmic mass fraction of -4.89 (7.5 × solar). The abundances of He (upper limit), C, N, O, Al, Si, O, P, S, Fe, Ni, Ge, and Sn were precisely determined. Upper abundance limits of about 10% solar were derived for Ti, Cr, Mn, and Co. Conclusions: The TheoSSA database of theoretical SEDs of stellar flux standards guarantees that the flux calibration of all astronomical data and cross-calibration between different instruments can be based on the same models and SEDs calculated with different model-atmosphere codes and are easy to compare. Based on observations with the NASA/ESA Hubble Space Telescope, obtained at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS5-26666.Based on observations made with the NASA-CNES-CSA Far Ultraviolet Spectroscopic Explorer.Figures 1, 6, 10-12, 23, A.1, A.2 and Tables 2-4 are available in electronic form at http://www.aanda.orgTable 5 and Figs. A.1 and A.2 (FITS files) are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/560/A106

Isolation and characterization of large spectrum and multiple bacteriocin-producing Enterococcus faecium strain from raw bovine milk.

PubMed

Gaaloul, N; ben Braiek, O; Hani, K; Volski, A; Chikindas, M L; Ghrairi, T

2015-02-01

To assess the antimicrobial properties of lactic acid bacteria from Tunisian raw bovine milk. A bacteriocin-producing Enterococcus faecium strain was isolated from raw cow milk with activity against Gram-positive and Gram-negative bacteria. Antimicrobial substances produced by this strain were sensitive to proteolytic enzymes and were thermostable and resistant to a broad range of pH (2-10). Mode of action of antimicrobial substances was determined as bactericidal. Maximum activity was reached at the end of the exponential growth phase when checked against Listeria ivanovii BUG 496 (2366.62 AU ml(-1)). However, maximum antimicrobial activity against Pseudomonas aeruginosa 28753 was recorded at the beginning of the exponential growth phase. Enterococcus faecium GGN7 was characterized as free from virulence factors and was susceptible to tested antibiotics. PCR analysis of the micro-organism's genome revealed the presence of genes coding for enterocins A and B. Mass spectrometry analysis of RP-HPLC active fractions showed molecular masses corresponding to enterocins A (4835.77 Da) and B (5471.56 Da), and a peptide with a molecular mass of 3215.5 Da active only against Gram-negative indicator strains. The latter was unique in the databases. Enterococcus faecium GGN7 produces three bacteriocins with different inhibitory spectra. Based on its antimicrobial properties and safety, Ent. faecium GGN7 is potentially useful for food biopreservation. The results suggest the bacteriocins from GGN7 strain could be useful for food biopreservation. © 2014 The Society for Applied Microbiology.

Purification of the spliced leader ribonucleoprotein particle from Leptomonas collosoma revealed the existence of an Sm protein in trypanosomes. Cloning the SmE homologue.

PubMed

Goncharov, I; Palfi, Z; Bindereif, A; Michaeli, S

1999-04-30

Trans-splicing in trypanosomes involves the addition of a common spliced leader (SL) sequence, which is derived from a small RNA, the SL RNA, to all mRNA precursors. The SL RNA is present in the cell in the form of a ribonucleoprotein, the SL RNP. Using conventional chromatography and affinity selection with 2'-O-methylated RNA oligonucleotides at high ionic strength, five proteins of 70, 16, 13, 12, and 8 kDa were co-selected with the SL RNA from Leptomonas collosoma, representing the SL RNP core particle. Under conditions of lower ionic strength, additional proteins of 28 and 20 kDa were revealed. On the basis of peptide sequences, the gene coding for a protein with a predicted molecular weight of 11.9 kDa was cloned and identified as homologue of the cis-spliceosomal SmE. The protein carries the Sm motifs 1 and 2 characteristic of Sm antigens that bind to all known cis-spliceosomal uridylic acid-rich small nuclear RNAs (U snRNAs), suggesting the existence of Sm proteins in trypanosomes. This finding is of special interest because trypanosome snRNPs are the only snRNPs examined to date that are not recognized by anti-Sm antibodies. Because of the early divergence of trypanosomes from the eukaryotic lineage, the trypanosome SmE protein represents one of the primordial Sm proteins in nature.

Imaging oxytocin × dopamine interactions: an epistasis effect of CD38 and COMT gene variants influences the impact of oxytocin on amygdala activation to social stimuli

PubMed Central

Sauer, Carina; Montag, Christian; Reuter, Martin; Kirsch, Peter

2013-01-01

Although oxytocin (OT) has become a major target for the investigation of positive social processes, it can be assumed that it exerts its effects in concert with other neurotransmitters. One candidate for such an interaction is dopamine (DA). For both systems, genetic variants have been identified that influence the availability of the particular substance. A variant of the gene coding for the transmembrane protein CD38 (rs3796863), which is engaged in OT secretion, has been associated with OT plasma level. The common catechol-O-methyltransferase (COMT) val158met polymorphism is known to influence COMT activity and therefore the degradation of DA. The present study aimed to investigate OT × DA interactions in the context of an OT challenge study. Hence, we tested the influence of the above mentioned genetic variants and their interaction on the activation of different brain regions (amygdala, VTA, ventral striatum and fusiform gyrus) during the presentation of social stimuli. In a pharmacological cross-over design 55 participants were investigated under OT and placebo (PLA) by means of fMRI. Brain imaging results revealed no significant effects for VTA or ventral striatum. Regarding the fusiform gyrus, we could not find any effects apart from those already described in Sauer et al. (2012). Analyses of amygdala activation resulted in no gene main effect, no gene × substance interaction but a significant gene × gene × substance interaction. While under PLA the effect of CD38 on bilateral amygdala activation to social stimuli was modulated by the COMT genotype, no such epistasis effect was found under OT. Our results provide evidence for an OT × DA interaction during responses to social stimuli. We postulate that the effect of central OT secretion on amygdala response is modulated by the availability of DA. Therefore, for an understanding of the effect of social hormones on social behavior, interactions of OT with other transmitter systems have to be taken into account. PMID:23554586

Geometric effects in the electronic transport of deformed nanotubes

NASA Astrophysics Data System (ADS)

Santos, Fernando; Fumeron, Sébastien; Berche, Bertrand; Moraes, Fernando

2016-04-01

Quasi-two-dimensional systems may exibit curvature, which adds three-dimensional influence to their internal properties. As shown by da Costa (1981 Phys. Rev. A 23 1982-7), charged particles moving on a curved surface experience a curvature-dependent potential which greatly influence their dynamics. In this paper, we study the electronic ballistic transport in deformed nanotubes. The one-electron Schrödinger equation with open boundary conditions is solved numerically with a flexible MAPLE code made available as supplementary data. We find that the curvature of the deformations indeed has strong effects on the electron dynamics, suggesting its use in the design of nanotube-based electronic devices.

Free-boundary PIES Calculations

NASA Astrophysics Data System (ADS)

Monticello, D. A.; Reiman, A. H.; Arndt, S. C.; Merkel, P. K.

1998-11-01

A new formulation of the free boundary problem for general three-dimensional configurations has been formulated for the PIES( Reiman, A. H., Greenside, H. S., Compt. Phys. Commun. 43), (1986). code. The new formulation is more flexible and is faster that the original formulation described in Merkel et al(Merkel, P., Johnson, J. L., Monticello, D.A., et al., Proceedings of the Fourteenth International Conference on Plasma Physics and Controlled Nuclear Fusion Research paper IAEA-CN-60 | D-P-II-10) (1994) . These advantages will be described and first results of the application of this new algorithm to W7-X and NCSX (National Compact Stellarator Experiment) configurations will be presented.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Meot, F.; Ahrens, L.; Glenn, J.

This Note reports on the first, and successful, simulations of particle and spin dynamics in the AGS in presence of the two helical snakes and of the tune-jump quadrupoles, using the ray-tracing code Zgoubi. It includes DA tracking in the absence or in the presence of the two helical snakes, simulation of particle and spin motion in the snakes using their magnetic field maps, spin flipping at integer resonances in the 36+Qy depolarizing resonance region, with and without tune-jump quadrupole gymnastics. It also includes details on the setting-up of Zgoubi input data files and on the various numerical methods ofmore » concern in and available from Zgoubi.« less

The cDNA-derived amino acid sequence of hemoglobin II from Lucina pectinata.

PubMed

Torres-Mercado, Elineth; Renta, Jessicca Y; Rodríguez, Yolanda; López-Garriga, Juan; Cadilla, Carmen L

2003-11-01

Hemoglobin II from the clam Lucina pectinata is an oxygen-reactive protein with a unique structural organization in the heme pocket involving residues Gln65 (E7), Tyr30 (B10), Phe44 (CD1), and Phe69 (E11). We employed the reverse transcriptase-polymerase chain reaction (RT-PCR) and methods to synthesize various cDNA(HbII). An initial 300-bp cDNA clone was amplified from total RNA by RT-PCR using degenerate oligonucleotides. Gene-specific primers derived from the HbII-partial cDNA sequence were used to obtain the 5' and 3' ends of the cDNA by RACE. The length of the HbII cDNA, estimated from overlapping clones, was approximately 2114 bases. Northern blot analysis revealed that the mRNA size of HbII agrees with the estimated size using cDNA data. The coding region of the full-length HbII cDNA codes for 151 amino acids. The calculated molecular weight of HbII, including the heme group and acetylated N-terminal residue, is 17,654.07 Da.

Molecular analysis of Toxoplasma gondii Surface Antigen 1 (SAG1) gene cloned from Toxoplasma gondii DNA isolated from Javanese acute toxoplasmosis

NASA Astrophysics Data System (ADS)

Haryati, Sri; Agung Prasetyo, Afiono; Sari, Yulia; Dharmawan, Ruben

2018-05-01

Toxoplasma gondii Surface Antigen 1 (SAG1) is often used as a diagnostic tool due to its immunodominant-specific as antigen. However, data of the Toxoplasma gondii SAG1 protein from Indonesian isolate is limited. To study the protein, genomic DNA was isolated from a Javanese acute toxoplasmosis blood samples patient. A complete coding sequence of Toxoplasma gondii SAG1 was cloned and inserted into an Escherichia coli expression plasmid and sequenced. The sequencing results were subjected to bioinformatics analysis. The Toxoplasma gondii SAG1 complete coding sequences were successfully cloned. Physicochemical analysis revealed the 336 aa of SAG1 had 34.7 kDa of weight. The isoelectric point and aliphatic index were 8.4 and 78.4, respectively. The N-terminal methionine half-life in Escherichia coli was more than 10 hours. The antigenicity, secondary structure, and identification of the HLA binding motifs also had been discussed. The results of this study would contribute information about Toxoplasma gondii SAG1 and benefits for further works willing to develop diagnostic and therapeutic strategies against the parasite.

A second gene for acyl-(acyl-carrier-protein): glycerol-3-phosphate acyltransferase in squash, Cucurbita moschata cv. Shirogikuza(*), codes for an oleate-selective isozyme: molecular cloning and protein purification studies.

PubMed

Nishida, I; Sugiura, M; Enju, A; Nakamura, M

2000-12-01

A new isogene for acyl-(acyl-carrier-protein):glycerol-3-phosphate acyltransferase (GPAT; EC 2.3.1.15) in squash has been cloned and the gene product was identified as oleate-selective GPAT. Using PCR primers that could hybridise with exons for a previously cloned squash GPAT, we obtained two PCR products of different size: one coded for a previously cloned squash GPAT corresponding to non-selective isoforms AT2 and AT3, and the other for a new isozyme, probably the oleate-selective isoform AT1. Full-length amino acid sequences of respective isozymes were deduced from the nucleotide sequences of genomic genes and cDNAs, which were cloned by a series of PCR-based methods. Thus, we designated the new gene CmATS1;1 and the other one CmATS1;2. Genome blot analysis revealed that the squash genome contained the two isogenes at non-allelic loci. AT1-active fractions were partially purified, and three polypeptide bands were identified as being AT1 polypeptides, which exhibited relative molecular masses of 39.5-40.5 kDa, pI values of 6.75-7.15, and oleate selectivity over palmitate. Partial amino-terminal sequences obtained from two of these bands verified that the new isogene codes for AT1 polypeptides.

Molecular cloning and analysis of Schizosaccharomyces pombe Reb1p: sequence-specific recognition of two sites in the far upstream rDNA intergenic spacer.

PubMed Central

Zhao, A; Guo, A; Liu, Z; Pape, L

1997-01-01

The coding sequences for a Schizosaccharomyces pombe sequence-specific DNA binding protein, Reb1p, have been cloned. The predicted S. pombe Reb1p is 24-29% identical to mouse TTF-1 (transcription termination factor-1) and Saccharomyces cerevisiae REB1 protein, both of which direct termination of RNA polymerase I catalyzed transcripts. The S.pombe Reb1 cDNA encodes a predicted polypeptide of 504 amino acids with a predicted molecular weight of 58.4 kDa. The S. pombe Reb1p is unusual in that the bipartite DNA binding motif identified originally in S.cerevisiae and Klyveromyces lactis REB1 proteins is uninterrupted and thus S.pombe Reb1p may contain the smallest natural REB1 homologous DNA binding domain. Its genomic coding sequences were shown to be interrupted by two introns. A recombinant histidine-tagged Reb1 protein bearing the rDNA binding domain has two homologous, sequence-specific binding sites in the S. pomber DNA intergenic spacer, located between 289 and 480 nt downstream of the end of the approximately 25S rRNA coding sequences. Each binding site is 13-14 bp downstream of two of the three proposed in vivo termination sites. The core of this 17 bp site, AGGTAAGGGTAATGCAC, is specifically protected by Reb1p in footprinting analysis. PMID:9016645

Genetic Diversity and Natural Selection in 42 kDa Region of Plasmodium vivax Merozoite Surface Protein-1 from China-Myanmar Endemic Border.

PubMed

Zhou, Xia; Tambo, Ernest; Su, Jing; Fang, Qiang; Ruan, Wei; Chen, Jun-Hu; Yin, Ming-Bo; Zhou, Xiao-Nong

2017-10-01

Plasmodium vivax merozoite surface protein-1 (PvMSP1) gene codes for a major malaria vaccine candidate antigen. However, its polymorphic nature represents an obstacle to the design of a protective vaccine. In this study, we analyzed the genetic polymorphism and natural selection of the C-terminal 42 kDa fragment within PvMSP1 gene (Pv MSP142) from 77 P. vivax isolates, collected from imported cases of China-Myanmar border (CMB) areas in Yunnan province and the inland cases from Anhui, Yunnan, and Zhejiang province in China during 2009-2012. Totally, 41 haplotypes were identified and 30 of them were new haplotypes. The differences between the rates of non-synonymous and synonymous mutations suggest that PvMSP142 has evolved under natural selection, and a high selective pressure preferentially acted on regions identified of PvMSP133. Our results also demonstrated that PvMSP142 of P. vivax isolates collected on China-Myanmar border areas display higher genetic polymorphisms than those collected from inland of China. Such results have significant implications for understanding the dynamic of the P. vivax population and may be useful information towards China malaria elimination campaign strategies.

Cloning, expression, purification, and activity assay of proteins related to D-lactic acid formation in Lactobacillus rhamnosus.

PubMed

Wang, Xiuwen; Zheng, Zhaojuan; Dou, Peipei; Qin, Jiayang; Wang, Xiaochen; Ma, Cuiqing; Tang, Hongzhi; Xu, Ping

2010-08-01

Two proteins that might be responsible for D-lactic acid (D-LA) formation were screened from the genome database of Lactobacillus rhamnosus GG. The coding genes of the two proteins in L. rhamnosus CASL, ldhD1 and ldhD2, were cloned and expressed in Escherichia coli Rosetta with an inducible expression vector pETDuet-1 (Novagen, Darmstadt, Germany), respectively. The two purified proteins, LdhD-1 and LdhD-2, migrated as a single protein band separately, both corresponding to an apparent molecular mass between 35 kDa and 45 kDa on sodium dodecyl sulfate polyacrylamide gel electrophoresis. The specific activities of LdhD-1 and LdhD-2 catalyzing pyruvate to LA were 0.02 U/mg and 0.21 U/mg, respectively. The configuration of LA converted from pyruvate was determined using high-performance liquid chromatography equipped with a chiral column. Only D-LA was detected when LdhD-1 and LdhD-2 were tested. In summary, the two proteins cloned and expressed in this study were most probably responsible for D-LA formation during fermentation of L. rhamnosus CASL.

Double-bromo and extraterminal (BET) domain proteins regulate dendrite morphology and mechanosensory function

PubMed Central

Bagley, Joshua A.; Yan, Zhiqiang; Zhang, Wei; Wildonger, Jill

2014-01-01

A complex array of genetic factors regulates neuronal dendrite morphology. Epigenetic regulation of gene expression represents a plausible mechanism to control pathways responsible for specific dendritic arbor shapes. By studying the Drosophila dendritic arborization (da) neurons, we discovered a role of the double-bromodomain and extraterminal (BET) family proteins in regulating dendrite arbor complexity. A loss-of-function mutation in the single Drosophila BET protein encoded by female sterile 1 homeotic [fs(1)h] causes loss of fine, terminal dendritic branches. Moreover, fs(1)h is necessary for the induction of branching caused by a previously identified transcription factor, Cut (Ct), which regulates subtype-specific dendrite morphology. Finally, disrupting fs(1)h function impairs the mechanosensory response of class III da sensory neurons without compromising the expression of the ion channel NompC, which mediates the mechanosensitive response. Thus, our results identify a novel role for BET family proteins in regulating dendrite morphology and a possible separation of developmental pathways specifying neural cell morphology and ion channel expression. Since the BET proteins are known to bind acetylated histone tails, these results also suggest a role of epigenetic histone modifications and the “histone code,” in regulating dendrite morphology. PMID:25184680

The virion glycoproteins of Ebola viruses are encoded in two reading frames and are expressed through transcriptional editing.

PubMed Central

Sanchez, A; Trappier, S G; Mahy, B W; Peters, C J; Nichol, S T

1996-01-01

In late 1994 and early 1995, Ebola (EBO) virus dramatically reemerged in Africa, causing human disease in the Ivory Coast and Zaire. Analysis of the entire glycoprotein genes of these viruses and those of other EBO virus subtypes has shown that the virion glycoprotein (130 kDa) is encoded in two reading frames, which are linked by transcriptional editing. This editing results in the addition of an extra nontemplated adenosine within a run of seven adenosines near the middle of the coding region. The primary gene product is a smaller (50-70 kDa), nonstructural, secreted glycoprotein, which is produced in large amounts and has an unknown function. Phylogenetic analysis indicates that EBO virus subtypes are genetically diverse and that the recent Ivory Coast isolate represents a new (fourth) subtype of EBO virus. In contrast, the EBO virus isolate from the 1995 outbreak in Kikwit, Zaire, is virtually identical to the virus that caused a similar epidemic in Yambuku, Zaire, almost 20 years earlier. This genetic stability may indicate that EBO viruses have coevolved with their natural reservoirs and do not change appreciably in the wild. Images Fig. 2 Fig. 3 PMID:8622982

The frequency dependence of the discharge properties in a capacitively coupled oxygen discharge

NASA Astrophysics Data System (ADS)

Gudmundsson, J. T.; Snorrason, D. I.; Hannesdottir, H.

2018-02-01

We use the one-dimensional object-oriented particle-in-cell Monte Carlo collision code oopd1 to explore the evolution of the charged particle density profiles, electron heating mechanism, the electron energy probability function (EEPF), and the ion energy distribution in a single frequency capacitively coupled oxygen discharge, with driving frequency in the range 12-100 MHz. At a low driving frequency and low pressure (5 and 10 mTorr), a combination of stochastic (α-mode) and drift ambipolar (DA) heating in the bulk plasma (the electronegative core) is observed and the DA-mode dominates the time averaged electron heating. As the driving frequency or pressure are increased, the heating mode transitions into a pure α-mode, where electron heating in the sheath region dominates. At low pressure (5 and 10 mTorr), this transition coincides with a sharp decrease in electronegativity. At low pressure and low driving frequency, the EEPF is concave. As the driving frequency is increased, the number of low energy electrons increases and the relative number of higher energy electrons (>10 eV) increases. At high driving frequency, the EEPF develops a convex shape or becomes bi-Maxwellian.

Characterization of a monoclonal antibody and a cDNA for polyubiquitin of Amoeba proteus.

PubMed

Lee, S Y; Kim, H J; Yoo, S Y; Ahn, T I

1998-01-01

A monoclonal antibody was obtained that reacts with many different proteins (14-200 kDa) of Amoeba proteus. By indirect immunofluorescence microscopy we found the antigens to be dispersed throughout the cytoplasm but were more concentrated in the nucleus. The antibody cross-reacted with proteins of Tetrahymena, Xenopus embryo, and mouse macrophages. Using the antibody as a probe we cloned a cDNA of 1.2 kb coding for ubiquitin in five repeats. Amino acid sequences of ameba's polyubiquitin showed the most variations among the nineteen polyubiquitins of other organisms compared. The well-conserved 20Ser and 55Thr residues were replaced with Gly and Ser, respectively. The 28Ala residue found in most organisms was replaced with Gln or Glu in the amoeba. Amoebae contained two ubiquitin-mRNAs that could be detected by Northern blot analysis using the cDNA as a probe. In an analysis for specificity, the antibody reacted with polyubiquitin and ubiquitin-fusion proteins larger than 14 kDa but not with monomeric ubiquitin. The antibody is a useful probe in the detection and characterization of proteins ubiquitinated in response to cellular stresses.

Thermostable NADP+-Dependent Medium-Chain Alcohol Dehydrogenase from Acinetobacter sp. Strain M-1: Purification and Characterization and Gene Expression in Escherichia coli

PubMed Central

Tani, Akio; Sakai, Yasuyoshi; Ishige, Takeru; Kato, Nobuo

2000-01-01

NADPH-dependent alkylaldehyde reducing enzyme, which was greatly induced by n-hexadecane, from Acinetobacter sp. strain M-1 was purified and characterized. The purified enzyme had molecular masses of 40 kDa as determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and 160 kDa as determined by gel filtration chromatography. The enzyme, which was shown to be highly thermostable, was most active toward n-heptanal and could use n-alkylaldehydes ranging from C2 to C14 and several substituted benzaldehydes, including the industrially important compounds cinnamyl aldehyde and anisaldehyde, as substrates. The alrA gene coding for this enzyme was cloned, and its nucleotide sequence was determined. The deduced amino acid sequence encoded by the alrA gene exhibited homology to the amino acid sequences of zinc-containing alcohol dehydrogenases from various sources. The gene could be highly expressed in Escherichia coli, and the product was purified to homogeneity by simpler procedures from the recombinant than from the original host. Our results show that this enzyme can be used for industrial bioconversion of useful alcohols and aldehydes. PMID:11097895

Cloning and expression of a small heat and salt tolerant protein (Hsp22) from Chaetomium globosum.

PubMed

Aggarwal, Rashmi; Gupta, Sangeeta; Sharma, Sapna; Banerjee, Sagar; Singh, Priyanka

2012-11-01

The present study reports molecular characterization of small heat shock protein gene in Indian isolates of Chaetomium globosum, C. perlucidum, C. reflexum, C. cochlioides and C. cupreum. Six isolates of C. globosum and other species showed a band of 630bp using specific primers. Amplified cDNA product of C. globosum (Cg 1) cloned and sequenced showed 603bp open reading frame encoding 200 amino-acids. The protein sequence had a molecular mass of 22 kDa and was therefore, named Hsp22. BlastX analysis revealed that the gene codes for a protein homologous to previously characterized Hsp22.4 gene from C. globosum (AAR36902.1, XP 001229241.1) and shared 95% identity in amino acid sequence. It also showed varying degree of similarities with small Hsp protein from Neurospora spp. (60%), Myceliophthora sp. (59%), Glomerella sp. (50%), Hypocrea sp. (52%), and Fusarium spp. (51%). This gene was further cloned into pET28a (+) and transformed E. coli BL21 cells were induced by IPTG, and the expressed protein of 30 kDa was analyzed by SDS-PAGE. The IPTG induced transformants displayed significantly greater resistance to NaCl and Na2CO3 stresses.

Dehydrin expression as a potential diagnostic tool for cold stress in white clover.

PubMed

Vaseva, Irina Ivanova; Anders, Iwona; Yuperlieva-Mateeva, Bistra; Nenkova, Rosa; Kostadinova, Anelia; Feller, Urs

2014-05-01

Cold acclimation is important for crop survival in environments undergoing seasonal low temperatures. It involves the induction of defensive mechanisms including the accumulation of different cryoprotective molecules among which are dehydrins (DHN). Recently several sequences coding for dehydrins were identified in white clover (Trifolium repens). This work aimed to select the most responsive to cold stress DHN analogues in search for cold stress diagnostic markers. The assessment of dehydrin transcript accumulation via RT-PCR and immunodetection performed with three antibodies against the conserved K-, Y-, and S-segment allowed to outline different dehydrin types presented in the tested samples. Both analyses confirmed that YnKn dehydrins were underrepresented in the controls but exposure to low temperature specifically induced their accumulation. Strong immunosignals corresponding to 37-40 kDa with antibodies against Y- and K-segment were revealed in cold-stressed leaves. Another 'cold-specific' band at position 52-55 kDa was documented on membranes probed with antibodies against K-segment. Real time RT-qPCR confirmed that low temperatures induced the accumulation of SKn and YnSKn transcripts in leaves and reduced their expression in roots. Results suggest that a YnKn dehydrin transcript with GenBank ID: KC247805 and the immunosignal at 37-40 kDa, obtained with antibodies against Y- and K-segment are reliable markers for cold stress in white clover. The assessment of SKn (GenBank ID: EU846208) and YnSKn (GenBank ID: KC247804) transcript levels in leaves could serve as additional diagnostic tools. Copyright © 2014 Elsevier Masson SAS. All rights reserved.

Sequence diversity among badnavirus isolates infecting yam (Dioscorea spp.) in Ghana, Togo, Benin and Nigeria.

PubMed

Eni, A O; Hughes, J d'A; Asiedu, R; Rey, M E C

2008-01-01

We analysed the sequence diversity in the reverse transcriptase (RT)/ribonuclease H (RNaseH) coding region of 19 badnavirus isolates infecting yam (Dioscorea spp.) in Ghana, Togo, Benin, and Nigeria. Phylogenetic analysis of the deduced amino acid sequences revealed that the isolates are broadly divided into two distinct species, each clustering with Dioscorea alata bacilliform virus (DaBV) and Dioscorea sansibarensis bacilliform virus (DsBV). Fourteen isolates had 90-96% amino acid identity with DaBV, while four isolates had 83-84% amino acid identity with DsBV. One isolate from Benin, BN4Dr, was distinct and had 77 and 75% amino acid identity with DaBV and DsBV, respectively, and may be a member of a new badnavirus species infecting yam in West Africa. Viruses of the two main species were present in Ghana, Togo and Benin and were observed to infect both D. alata and D. rotundata indiscriminately. This is the first confirmed report of DsBV infection in yam in Ghana and Togo. The results of this study demonstrate that members of two distinct species of badnaviruses infect yam in the West African yam zone and suggest a putative new species, BN4Dr. We also conclude that these species are not confined to limited geographic regions or specific for yam host species. However, the three badnavirus species are serologically related. The sequence information obtained from this study can be used to develop PCR-based diagnostics to detect members of the various species and/or strains of badnaviruses infecting yam in West Africa.

Ft. Drum, New York. Limited Surface Observations Climatic Summary (LISOCS). Parts A-F.

DTIC Science & Technology

1987-09-01

putO r. , j FEDERAL BUILDING DI 5 trf - ,:;, lIril t 1 ,d."ASHEVILLE, N.C. 28801- 2723 04 88 88 1 29 008 REVIEW AND APPROVAL STATEMENT USAFETAC/DS-87...IlTitle: (LISOCS) Ft Drum NY. 12Personal Autor(s): 1 3aType of Reprt: Da ti Summa ry l3bTime Covered: May 44-Aug 46, May 70-Aug; 74 , Sep 48-Apr 87...l4Date of Reprt. Sep 87 l5t~p__Count: 312 17C0SATI Codes: Field-04, Group-02 l8Subjet Terms: *cl~mtoog~y *weat’ 1 .r -)rerj~t’loinditions winds prec

A new open reading frame in the genome of the cyanobacterium Synechocystis sp. PCC 6803

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lysenko, E.S.; Ogarkova, O.A.; Tarasov, V.A.

1995-02-01

A new open reading frame ORF242, coding for a 26.47-kDa polypeptide, was found in a DNA fragment of the cyanobacterium Synechocystis 6803, transforming a photosynthetic mutant to photoautotrophy and having homology with plant chloroplast DNA. In the 5{prime} flanking region of ORF242, consensus sequences characteristic of a functioning gene were found. One copy of ORF242 is present in the Synechocystis 6803 genome. Insertion inactivation of ORF242 does not lead to a decrease in photosynthetic activity in cells of cyanobacteria but may influence the ratio between active complexes of photosystems I and II. 22 refs., 6 figs., 2 tabs.

Air pollution, neighbourhood and maternal-level factors modify the effect of smoking on birth weight: a multilevel analysis in British Columbia, Canada.

PubMed

Erickson, Anders C; Ostry, Aleck; Chan, Hing Man; Arbour, Laura

2016-07-16

Maternal smoking during pregnancy negatively impacts fetal growth, but the effect is not homogenous across the population. We sought to determine how the relationship between cigarette use and fetal growth is modified by the social and physical environment. Birth records with covariates were obtained from the BC Perinatal Database Registry (N = 232,291). Maternal smoking status was self-reported as the number of cigarettes smoked per day usually at the first prenatal care visit. Census dissemination areas (DAs) were used as neighbourhood-level units and linked to individual births using residential postal codes to assign exposure to particulate air pollution (PM 2.5 ) and neighbourhood-level attributes such as socioeconomic status (SES), proportion of post-secondary education, immigrant density and living in a rural place. Random coefficient models were used with cigarettes/day modeled with a random slope to estimate its between-DA variability and test cross-level interactions with the neighbourhood-level variables on continuous birth weight. A significant negative and non-linear association was found between maternal smoking and birth weight. There was significant between-DA intercept variability in birth weight as well as between-DA slope variability of maternal smoking on birth weight of which 68 and 30 % respectively was explained with the inclusion of DA-level variables and their cross-level interactions. High DA-level SES had a strong positive association with birth weight but the effect was moderated with increased cigarettes/day. Conversely, heavy smokers showed the largest increases in birth weight with rising neighbourhood education levels. Increased levels of PM 2.5 and immigrant density were negatively associated with birth weight, but showed positive interactions with increased levels of smoking. Older maternal age and suspected drug or alcohol use both had negative interactions with increased levels of maternal smoking. Maternal smoking had a negative and non-linear dose-response association with birth weight which was highly variable between neighbourhoods and evidence of effect modification with neighbourhood-level factors. These results suggest that focusing exclusively on individual behaviours may have limited success in improving outcomes without addressing the contextual influences at the neighbourhood-level. Further studies are needed to corroborate our findings and to understand how neighbourhood-level attributes interact with smoking to affect birth outcomes.

Resilience of the health team in caring for people with mental disorders in a psychiatric hospital.

PubMed

Brolese, Débora Felippe; Lessa, Greice; Santos, José Luís Guedes Dos; Mendes, Jucimara da Silva; Cunha, Kamylla Santos da; Rodrigues, Jeferson

2017-08-17

Evaluating and understanding the resilience process of the health team in caring for people with mental disorders in a psychiatric hospital. A mixed-method study with concomitant triangulation of data from a cross-sectional study, with health professionals, and Grounded Theory in the data. Quantitative data were collected using the Resilience Scale and analyzed using descriptive and inferential statistics. Qualitative data were obtained from interviews and analyzed using initial and focused coding. 40 health professionals participated in the study. Mean responses of the participants in the resilience scale were 99.80 ± 12.86 points, with a minimum of 35 and a maximum of 114 points. From the qualitative data, we can highlight the professionals' commitment in developing competencies in caring for people with mental disorders; valorization of teamwork and positive impact on work for the re-signification of the meaning of life. Understanding this process of resilience enables developing strategies to improve the quality of life of workers in psychiatric hospitals. Avaliar e compreender o processo de resiliência da equipe de saúde no cuidado a pessoas com transtornos mentais em um hospital psiquiátrico. Estudo de método misto com triangulação concomitante de dados de um estudo transversal, com profissionais de saúde, e uma Teoria Fundamentada nos Dados. Os dados quantitativos foram coletados a partir da Escala de Resiliência e analisados por meio de estatística descritiva e inferencial. Os dados qualitativos foram obtidos a partir de entrevistas e analisados mediante codificação inicial e focalizada. Participaram da pesquisa 40 profissionais de saúde. Na escala de resiliência, a média das respostas dos participantes foi 99,80±12,86 pontos, o mínimo foi de 35 e o máximo de 114 pontos. Nos dados qualitativos, destacaram-se o empenho dos profissionais para o desenvolvimento de competências para o cuidado de pessoas com transtornos mentais, a valorização do trabalho em equipe e o impacto positivo no trabalho para a ressignificação do sentido da vida. Conclusão: O entendimento desse processo de resiliência possibilita o desenvolvimento de estratégias para a melhoria da qualidade de vida dos trabalhadores que atuam em hospitais psiquiátricos.

Evidence for an ergot alkaloid gene cluster in Claviceps purpurea.

PubMed

Tudzynski, P; Hölter, K; Correia, T; Arntz, C; Grammel, N; Keller, U

1999-02-01

A gene (cpd1) coding for the dimethylallyltryptophan synthase (DMATS) that catalyzes the first specific step in the biosynthesis of ergot alkaloids, was cloned from a strain of Claviceps purpurea that produces alkaloids in axenic culture. The derived gene product (CPD1) shows only 70% similarity to the corresponding gene previously isolated from Claviceps strain ATCC 26245, which is likely to be an isolate of C. fusiformis. Therefore, the related cpd1 most probably represents the first C. purpurea gene coding for an enzymatic step of the alkaloid biosynthetic pathway to be cloned. Analysis of the 3'-flanking region of cpd1 revealed a second, closely linked ergot alkaloid biosynthetic gene named cpps1, which codes for a 356-kDa polypeptide showing significant similarity to fungal modular peptide synthetases. The protein contains three amino acid-activating modules, and in the second module a sequence is found which matches that of an internal peptide (17 amino acids in length) obtained from a tryptic digest of lysergyl peptide synthetase 1 (LPS1) of C. purpurea, thus confirming that cpps1 encodes LPS1. LPS1 activates the three amino acids of the peptide portion of ergot peptide alkaloids during D-lysergyl peptide assembly. Chromosome walking revealed the presence of additional genes upstream of cpd1 which are probably also involved in ergot alkaloid biosynthesis: cpox1 probably codes for an FAD-dependent oxidoreductase (which could represent the chanoclavine cyclase), and a second putative oxidoreductase gene, cpox2, is closely linked to it in inverse orientation. RT-PCR experiments confirm that all four genes are expressed under conditions of peptide alkaloid biosynthesis. These results strongly suggest that at least some genes of ergot alkaloid biosynthesis in C. purpurea are clustered, opening the way for a detailed molecular genetic analysis of the pathway.

Molecular characterization of a novel algal glutamine synthetase (GS) and an algal glutamate synthase (GOGAT) from the colorful outer mantle of the giant clam, Tridacna squamosa, and the putative GS-GOGAT cycle in its symbiotic zooxanthellae.

PubMed

Fam, Rachel R S; Hiong, Kum C; Choo, Celine Y L; Wong, Wai P; Chew, Shit F; Ip, Yuen K

2018-05-20

Giant clams harbor symbiotic zooxanthellae (Symbiodinium), which are nitrogen-deficient, mainly in the fleshy and colorful outer mantle. This study aimed to sequence and characterize the algal Glutamine Synthetase (GS) and Glutamate Synthase (GLT), which constitute the glutamate synthase cycle (or GS-GOGAT cycle, whereby GOGAT is the protein acronym of GLT) of nitrogen assimilation, from the outer mantle of the fluted giant clam, Tridacna squamosa. We had identified a novel GS-like cDNA coding sequence of 2325 bp, and named it as T. squamosa Symbiodinium GS1 (TSSGS1). The deduced TSSGS1 sequence had 774 amino acids with a molecular mass of 85 kDa, and displayed the characteristics of GS1 and Nucleotide Diphosphate Kinase. The cDNA coding sequence of the algal GLT, named as T. squamosa Symbiodinium GLT (TSSGLT), comprised 6399 bp, encoding a protein of 2133 amino acids and 232.4 kDa. The zooxanthellal origin of TSSGS1 and TSSGOGAT was confirmed by sequence comparison and phylogenetic analyses. Indeed, TSSGS1 and TSSGOGAT were expressed predominately in the outer mantle, which contained the majority of the zooxanthellae. Immunofluorescence microscopy confirmed the expression of TSSGS1 and TSSGOGAT in the cytoplasm and the plastids, respectively, of the zooxanthellae in the outer mantle. It can be concluded that the symbiotic zooxanthellae of T. squamosa possesses a glutamate synthase (TSSGS1-TSSGOGAT) cycle that can assimilate endogenous ammonia produced by the host clam into glutamate, which can act as a substrate for amino acid syntheses. Thus, our results provide insights into why intact giant clam-zooxanthellae associations do not excrete ammonia under normal circumstances. Copyright © 2018 Elsevier B.V. All rights reserved.

[Prospective DRG coding : Improvement in cost-effectiveness and documentation quality of in-patient hospital care].

PubMed

Geuss, S; Jungmeister, A; Baumgart, A; Seelos, R; Ockert, S

2018-02-01

In prospective reimbursement schemes a diagnosis-related group (DRG) is assigned to each case according to all coded diagnoses and procedures. This process can be conducted retrospectively after (DC) or prospectively during the hospitalization (PC). The use of PC offers advantages in terms of cost-effectiveness and documentation quality without impairing patient safety. A retrospective analysis including all DRG records and billing data from 2012 to 2015 of a surgical department was carried out. The use of PC was introduced into the vascular surgery unit (VS) in September 2013, while the remaining surgical units (RS) stayed with DC. Analysis focused on differences between VS and RS before and after introduction of PC. Characteristics of cost-effectiveness were earnings (EBIT-DA), length of stay (LOS), the case mix index (CMI) and the productivity in relation to the DRG benchmark (productivity index, PI). The number of recorded diagnoses/procedures (ND/NP) was an indicator for documentation quality. A total of 1703 cases with VS and 27,679 cases with RS were analyzed. After introduction of PC the EBIT-DA per case increased in VS but not in RS (+3342 Swiss francs vs. +84, respectively, p < 0.001). The CMI increased slightly in both groups (+0.10 VS vs. +0.08 RS, p > 0.05) and the LOS was more reduced in VS than in RS (-0.36 days vs. -0.03 days, p > 0.005). The PI increased in VS but decreased in RS (+0.131 vs. -0.032, p < 0.001), ND increased more in VS (+1.29 VS vs. +0.26 RS, p < 0.001) and NP remained stable in both groups. The use of PC helps to significantly improve cost-effectiveness and documentation quality of in-patient hospital care, essentially by optimizing LOS and cost weight in relation to the DRG benchmark, i. e. increasing the PI. The increasing ND indicates an improvement in documentation quality.

Gelsolin in Onychophora and Tardigrada with notes on its variability in the Ecdysozoa.

PubMed

Thiruketheeswaran, Prasath; Greven, Hartmut; D'Haese, Jochen

2017-01-01

Rearrangements of the filamentous actin network involve a broad range of actin binding proteins. Among these, the gelsolin proteins sever actin filaments, cap their fast growing end and nucleate actin assembly in a calcium-dependent manner. Here, we focus on the gelsolin of the onychophoran Peripatoides novaezealandiae and the eutardigrade Hypsibius dujardini. From the cDNA of P. novaezealandiae we obtained the complete coding sequence with an open reading frame of 2178bp. It encodes a protein of 726 amino acids with a calculated molecular mass of 82,610.9Da and a pI of 5.57. This sequence is comprised of six segments (S1-S6). However, analysis of data from TardiBase reveals that the gelsolin of the eutardigrade Hypsibius dujardini has only three segments (S1-S3). The coding sequence consist of 1119bp for 373 amino acids with a calculated molecular mass of 42,440.95Da and a pI of 6.17. The Peripatoides and Hypsibius gelsolin revealed both conserved binding motifs for G-actin, F-actin and phosphatidylinositol 4,5-bisphosphate (PIP 2 ), along with a full set of type-1 and type-2 Ca 2+ -binding sites which could result in the binding of eight and four calcium ions, respectively. Both gelsolin proteins lack a C-terminal latch-helix indicating a more rapid activation in the submicromolar Ca 2+ range. We suggest that a gelsolin with three segments was present in the last common ancestor of the ecdysozoan clade Panarthropoda (Onychophora, Tardigrada, Arthropoda), primarily because the gelsolin of all non-Ecdysozoa studied so far (except Chordata) reveals this number of segments. Mapping of our molecular data onto a well-established phylogeny revealed that the number of gelsolin segments does not correlate with the phylogenetic lineage but rather with particular functional demands to alter the kinetics of actin polymerization. Copyright © 2016 Elsevier Inc. All rights reserved.

Trypanosoma cruzi has not lost its S-adenosylmethionine decarboxylase: characterization of the gene and the encoded enzyme.

PubMed Central

Persson, K; Aslund, L; Grahn, B; Hanke, J; Heby, O

1998-01-01

All attempts to identify ornithine decarboxylase in the human pathogen Trypanosoma cruzi have failed. The parasites have instead been assumed to depend on putrescine uptake and S-adenosylmethionine decarboxylase (AdoMetDC) for their synthesis of the polyamines spermidine and spermine. We have now identified the gene encoding AdoMetDC in T. cruzi by PCR cloning, with degenerate primers corresponding to conserved amino acid sequences in AdoMetDC proteins of other trypanosomatids. The amplified DNA fragment was used as a probe to isolate the complete AdoMetDC gene from a T. cruzi genomic library. The AdoMetDC gene was located on chromosomes with a size of approx. 1.4 Mbp, and contained a coding region of 1110 bp, specifying a sequence of 370 amino acid residues. The protein showed a sequence identity of only 25% with human AdoMetDC, the major differences being additional amino acids present in the terminal regions of the T. cruzi enzyme. As expected, a higher sequence identity (68-72%) was found in comparison with trypanosomatid AdoMetDCs. When the coding region was expressed in Escherichia coli, the recombinant protein underwent autocatalytic cleavage, generating a 33-34 kDa alpha subunit and a 9 kDa beta subunit. The encoded protein catalysed the decarboxylation of AdoMet (Km 0.21 mM) and was stimulated by putrescine but inhibited by the polyamines, weakly by spermidine and strongly by spermine. Methylglyoxal-bis(guanylhydrazone) (MGBG), a potent inhibitor of human AdoMetDC, was a poor inhibitor of the T. cruzi enzyme. This differential sensitivity to MGBG suggests that the two enzymes are sufficiently different to warrant the search for compounds that might interfere with the progression of Chagas' disease by selectively inhibiting T. cruzi AdoMetDC. PMID:9677309

Induction of an interleukin-1 receptor (IL-1R) on monocytic cells. Evidence that the receptor is not encoded by a T cell-type IL-1R mRNA.

PubMed

Spriggs, M K; Lioubin, P J; Slack, J; Dower, S K; Jonas, U; Cosman, D; Sims, J E; Bauer, J

1990-12-25

Primary human monocytes and the human monocytic cell line THP-1 were induced to express receptors for interleukin-1 alpha (IL-1 alpha) and IL-1 beta. Treatment of primary monocytes with dexamethasone resulted in a 10-fold increase in receptor number over untreated cells, to approximately 2,000 receptors/cell. Treatment of THP-1 cells with phorbol ester followed by prostaglandin E2 and dexamethasone resulted in the expression of approximately 30,000 receptors/cell. Competitive binding assays on THP-1 cells showed that both IL-1 alpha and IL-1 beta bind to the same receptor. The monocyte IL-1R is significantly smaller (63 kDa) than the T cell IL-1R (80 kDa) and is immunologically distinct. However, induction of monocytes and monocytic cell lines leads to the appearance of an abundant mRNA of approximately 5,000 bases which hybridizes to a cDNA probe from the T cell-type IL-1R. Sequence data obtained from a cDNA clone of this mRNA indicate that the message is identical to the T cell IL-1R mRNA throughout the coding region. A smaller mRNA, also homologous to the T cell IL-1R mRNA, accumulated in induced THP-1 cells and has a shorter 3'-untranslated region than the larger. Data are presented which suggest that neither form of this message encodes the 63-kDa IL-1R, but rather that this protein is the product of a separate nonhomologous mRNA.

Cloning, sequencing, purification, and crystal structure of Grenache (Vitis vinifera) polyphenol oxidase.

PubMed

Virador, Victoria M; Reyes Grajeda, Juan P; Blanco-Labra, Alejandro; Mendiola-Olaya, Elizabeth; Smith, Gary M; Moreno, Abel; Whitaker, John R

2010-01-27

The full-length cDNA sequence (P93622_VITVI) of polyphenol oxidase (PPO) cDNA from grape Vitis vinifera L., cv Grenache, was found to encode a translated protein of 607 amino acids with an expected molecular weight of ca. 67 kDa and a predicted pI of 6.83. The translated amino acid sequence was 99%, identical to that of a white grape berry PPO (1) (5 out of 607 amino acid potential sequence differences). The protein was purified from Grenache grape berries by using traditional methods, and it was crystallized with ammonium acetate by the hanging-drop vapor diffusion method. The crystals were orthorhombic, space group C222(1). The structure was obtained at 2.2 A resolution using synchrotron radiation using the 39 kDa isozyme of sweet potato PPO (PDB code: 1BT1 ) as a phase donor. The basic symmetry of the cell parameters (a, b, and c and alpha, beta, and gamma) as well as in the number of asymmetric units in the unit cell of the crystals of PPO, differed between the two proteins. The structures of the two enzymes are quite similar in overall fold, the location of the helix bundles at the core, and the active site in which three histidines bind each of the two catalytic copper ions, and one of the histidines is engaged in a thioether linkage with a cysteine residue. The possibility that the formation of the Cys-His thioether linkage constitutes the activation step is proposed. No evidence of phosphorylation or glycoslyation was found in the electron density map. The mass of the crystallized protein appears to be only 38.4 kDa, and the processing that occurs in the grape berry that leads to this smaller size is discussed.

A calibration method for realistic neutron dosimetry in radiobiological experiments assisted by MCNP simulation

PubMed Central

Shahmohammadi Beni, Mehrdad; Krstic, Dragana; Nikezic, Dragoslav; Yu, Kwan Ngok

2016-01-01

Many studies on biological effects of neutrons involve dose responses of neutrons, which rely on accurately determined absorbed doses in the irradiated cells or living organisms. Absorbed doses are difficult to measure, and are commonly surrogated with doses measured using separate detectors. The present work describes the determination of doses absorbed in the cell layer underneath a medium column (DA) and the doses absorbed in an ionization chamber (DE) from neutrons through computer simulations using the MCNP-5 code, and the subsequent determination of the conversion coefficients R (= DA/DE). It was found that R in general decreased with increase in the medium thickness, which was due to elastic and inelastic scattering. For 2-MeV neutrons, conspicuous bulges in R values were observed at medium thicknesses of about 500, 1500, 2500 and 4000 μm, and these were attributed to carbon, oxygen and nitrogen nuclei, and were reflections of spikes in neutron interaction cross sections with these nuclei. For 0.1-MeV neutrons, no conspicuous bulges in R were observed (except one at ~2000 μm that was due to photon interactions), which was explained by the absence of prominent spikes in the interaction cross-sections with these nuclei for neutron energies <0.1 MeV. The ratio R could be increased by ~50% for small medium thickness if the incident neutron energy was reduced from 2 MeV to 0.1 MeV. As such, the absorbed doses in cells (DA) would vary with the incident neutron energies, even when the absorbed doses shown on the detector were the same. PMID:27380801

Allelic variation of a dehydrin gene cosegregates with chilling tolerance during seedling emergence

PubMed Central

Ismail, Abdelbagi M.; Hall, Anthony E.; Close, Timothy J.

1999-01-01

Dehydrins (DHNs, LEA D-11) are plant proteins present during environmental stresses associated with dehydration or low temperatures and during seed maturation. Functions of DHNs have not yet been defined. Earlier, we hypothesized that a ≈35-kDa DHN and membrane properties that reduce electrolyte leakage from seeds confer chilling tolerance during seedling emergence of cowpea (Vigna unguiculata L. Walp.) in an additive and independent manner. Evidence for this hypothesis was not rigorous because it was based on correlations of presence/absence of the DHN and slow electrolyte leakage with chilling tolerance in closely related cowpea lines that have some other genetic differences. Here, we provide more compelling genetic evidence for involvement of the DHN in chilling tolerance of cowpea. We developed near-isogenic lines by backcrossing. We isolated and determined the sequence of a cDNA corresponding to the ≈35-kDa DHN and used gene-specific oligonucleotides derived from it to test the genetic linkage between the DHN presence/absence trait and the DHN structural gene. We tested for association between the DHN presence/absence trait and both low-temperature seed emergence and electrolyte leakage. We show that allelic differences in the Dhn structural gene map to the same position as the DHN protein presence/absence trait and that the presence of the ≈35-kDa DHN is indeed associated with chilling tolerance during seedling emergence, independent of electrolyte leakage effects. Two types of allelic variation in the Dhn gene were identified in the protein-coding region, deletion of one Φ-segment from the DHN-negative lines and two single amino acid substitutions. PMID:10557361

Fully-automated identification of fish species based on otolith contour: using short-time Fourier transform and discriminant analysis (STFT-DA).

PubMed

Salimi, Nima; Loh, Kar Hoe; Kaur Dhillon, Sarinder; Chong, Ving Ching

2016-01-01

Background. Fish species may be identified based on their unique otolith shape or contour. Several pattern recognition methods have been proposed to classify fish species through morphological features of the otolith contours. However, there has been no fully-automated species identification model with the accuracy higher than 80%. The purpose of the current study is to develop a fully-automated model, based on the otolith contours, to identify the fish species with the high classification accuracy. Methods. Images of the right sagittal otoliths of 14 fish species from three families namely Sciaenidae, Ariidae, and Engraulidae were used to develop the proposed identification model. Short-time Fourier transform (STFT) was used, for the first time in the area of otolith shape analysis, to extract important features of the otolith contours. Discriminant Analysis (DA), as a classification technique, was used to train and test the model based on the extracted features. Results. Performance of the model was demonstrated using species from three families separately, as well as all species combined. Overall classification accuracy of the model was greater than 90% for all cases. In addition, effects of STFT variables on the performance of the identification model were explored in this study. Conclusions. Short-time Fourier transform could determine important features of the otolith outlines. The fully-automated model proposed in this study (STFT-DA) could predict species of an unknown specimen with acceptable identification accuracy. The model codes can be accessed at http://mybiodiversityontologies.um.edu.my/Otolith/ and https://peerj.com/preprints/1517/. The current model has flexibility to be used for more species and families in future studies.

Pseudomonas oleovorans Strain KBPF-004 Culture Supernatants Reduced Seed Transmission of Cucumber green mottle mosaic virus and Pepper mild mottle virus, and Remodeled Aggregation of 126 kDa and Subcellular Localization of Movement Protein of Pepper mild mottle virus

PubMed Central

Kim, Nam-Gyu; Seo, Eun-Young; Han, Sang-Hyuk; Gong, Jun-Su; Park, Cheol-Nam; Park, Ho-Seop; Domier, Leslie L; Hammond, John; Lim, Hyoun-Sub

2017-01-01

Efforts to control viral diseases in crop production include several types of physical or chemical treatments; antiviral extracts of a number of plants have also been examined to inhibit plant viral infection. However, treatments utilizing naturally selected microorganisms with activity against plant viruses are poorly documented. Here we report isolation of a soil inhabiting bacterium, Pseudomonas oleovorans strain KBPF-004 (developmental code KNF2016) which showed antiviral activity against mechanical transmission of tobamoviruses. Antiviral activity was also evaluated in seed transmission of two tobamoviruses, Pepper mild mottle virus (PMMoV) and Cucumber green mottle mosaic virus (CGMMV), by treatment of seed collected from infected pepper and watermelon, respectively. Pepper and watermelon seeds were treated with culture supernatant of P. oleovorans strain KBPF-004 or control strain ATCC 8062 before planting. Seeds germinated after treatment with water or ATCC 8062 yielded about 60% CGMMV or PMMoV positive plants, whereas < 20% of KBPF-004-treated seeds were virus-infected, a significantly reduced seed transmission rate. Furthermore, supernatant of P. oleovorans strain KBPF-004 remodeled aggregation of PMMoV 126 kDa protein and subcellular localization of movement protein in Nicotiana benthamiana, diminishing aggregation of the 126 kDa protein and essentially abolishing association of the movement protein with the microtubule network. In leaves agroinfiltrated with constructs expressing the coat protein (CP) of either PMMoV or CGMMV, less full-size CP was detected in the presence of supernatant of P. oleovorans strain KBPF-004. These changes may contribute to the antiviral effects of P. oleovorans strain KBPF-004. PMID:28811756

DOE Office of Scientific and Technical Information (OSTI.GOV)

Virador, V.; Reyes Grajeda, J; Blanco-Labra, A

The full-length cDNA sequence (P93622{_}VITVI) of polyphenol oxidase (PPO) cDNA from grape Vitis vinifera L., cv Grenache, was found to encode a translated protein of 607 amino acids with an expected molecular weight of ca. 67 kDa and a predicted pI of 6.83. The translated amino acid sequence was 99%, identical to that of a white grape berry PPO (1) (5 out of 607 amino acid potential sequence differences). The protein was purified from Grenache grape berries by using traditional methods, and it was crystallized with ammonium acetate by the hanging-drop vapor diffusion method. The crystals were orthorhombic, space groupmore » C2221. The structure was obtained at 2.2 {angstrom} resolution using synchrotron radiation using the 39 kDa isozyme of sweet potato PPO (PDB code: 1BT1) as a phase donor. The basic symmetry of the cell parameters (a, b, and c and {alpha}, {beta}, and {gamma}) as well as in the number of asymmetric units in the unit cell of the crystals of PPO, differed between the two proteins. The structures of the two enzymes are quite similar in overall fold, the location of the helix bundles at the core, and the active site in which three histidines bind each of the two catalytic copper ions, and one of the histidines is engaged in a thioether linkage with a cysteine residue. The possibility that the formation of the Cys-His thioether linkage constitutes the activation step is proposed. No evidence of phosphorylation or glycoslyation was found in the electron density map. The mass of the crystallized protein appears to be only 38.4 kDa, and the processing that occurs in the grape berry that leads to this smaller size is discussed.« less

Cosmic Dawn (CoDa): the First Radiation-Hydrodynamics Simulation of Reionization and Galaxy Formation in the Local Universe

NASA Astrophysics Data System (ADS)

Ocvirk, Pierre; Gillet, Nicolas; Shapiro, Paul R.; Aubert, Dominique; Iliev, Ilian T.; Teyssier, Romain; Yepes, Gustavo; Choi, Jun-Hwan; Sullivan, David; Knebe, Alexander; Gottlöber, Stefan; D'Aloisio, Anson; Park, Hyunbae; Hoffman, Yehuda; Stranex, Timothy

2016-12-01

Cosmic reionization by starlight from early galaxies affected their evolution, thereby impacting reionization itself. Star formation suppression, for example, may explain the observed underabundance of Local Group dwarfs relative to N-body predictions for cold dark matter. Reionization modelling requires simulating volumes large enough [˜ (100 Mpc)3] to sample reionization `patchiness', while resolving millions of galaxy sources above ˜108 M⊙ combining gravitational and gas dynamics with radiative transfer. Modelling the Local Group requires initial cosmological density fluctuations pre-selected to form the well-known structures of the Local Universe today. Cosmic Dawn (`CoDa') is the first such fully coupled, radiation-hydrodynamics simulation of reionization of the Local Universe. Our new hybrid CPU-GPU code, RAMSES-CUDATON, performs hundreds of radiative transfer and ionization rate-solver timesteps on the GPUs for each hydro-gravity timestep on the CPUs. CoDa simulated (91Mpc)3 with 40963 particles and cells, to redshift 4.23, on ORNL supercomputer Titan, utilizing 8192 cores and 8192 GPUs. Global reionization ended slightly later than observed. However, a simple temporal rescaling which brings the evolution of ionized fraction into agreement with observations also reconciles ionizing flux density, cosmic star formation history, CMB electron scattering optical depth and galaxy UV luminosity function with their observed values. Photoionization heating suppressed the star formation of haloes below ˜2 × 109 M⊙, decreasing the abundance of faint galaxies around MAB1600 = [-10, -12]. For most of reionization, star formation was dominated by haloes between 1010-1011 M⊙ , so low-mass halo suppression was not reflected by a distinct feature in the global star formation history. Intergalactic filaments display sheathed structures, with hot envelopes surrounding cooler cores, but do not self-shield, unlike regions denser than 100 <ρ>.

Cloning and characterization of the human 5,10-methenyltetrahydrofolate synthetase-encoding cDNA.

PubMed

Dayan, A; Bertrand, R; Beauchemin, M; Chahla, D; Mamo, A; Filion, M; Skup, D; Massie, B; Jolivet, J

1995-11-20

Methenyltetrahydrofolate synthetase (MTHFS) catalyses the obligatory initial metabolic step in the intracellular conversion of 5-formyltetrahydrofolate to other reduced folates. We have isolated and sequenced a human MTHFS cDNA which is 872-bp long and codes for a 203-amino-acid protein of 23,229 Da. Escherichia coli BL21(DE3), transfected with pET11c plasmids containing an open reading frame encoding MTHFS, showed a 100-fold increase in MTHFS activity in bacterial extracts after IPTG induction. Northern blot studies of human tissues determined that the MTHFS mRNA was expressed preferentially in the liver and Southern blot analysis of human genomic DNA suggested the presence of a single-copy gene.

‘They leave at least believing they had a part in the discussion’: Understanding decision aid use and patient–clinician decision-making through qualitative research

PubMed Central

Tiedje, Kristina; Shippee, Nathan D.; Johnson, Anna M.; Flynn, Priscilla M.; Finnie, Dawn M.; Liesinger, Juliette T.; May, Carl R.; Olson, Marianne E.; Ridgeway, Jennifer L.; Shah, Nilay D.; Yawn, Barbara P.; Montori, Victor M.

2013-01-01

Objective This study explores how patient decision aids (DAs) for antihyperglycemic agents and statins, designed for use during clinical consultations, are embedded into practice, examining how patients and clinicians understand and experience DAs in primary care visits. Methods We conducted semistructured in-depth interviews with patients (n = 22) and primary care clinicians (n = 19), and videorecorded consultations (n = 44). Two researchers coded all transcripts. Inductive analyses guided by grounded theory led to the identification of themes. Video and interview data were compared and organized by themes. Results DAs used during consultations became flexible artifacts, incorporated into existing decision making roles for clinicians (experts, authority figures, persuaders, advisors) and patients (drivers of healthcare, learners, partners). DAs were applied to different decision making steps (deliberation, bargaining, convincing, case assessment), and introduced into an existing knowledge context (participants’ literacy regarding shared decision-making (SDM) and DAs). Conclusion DAs’ flexible use during consultations effectively provided space for discussion, even when SDM was not achieved. DAs can be used within any decision-making model. Practice implications Clinician training in DA use and SDM practice may be needed to facilitate DA implementation and promote more ideal-type forms of sharing in decision making. PMID:23598292

Double-bromo and extraterminal (BET) domain proteins regulate dendrite morphology and mechanosensory function.

PubMed

Bagley, Joshua A; Yan, Zhiqiang; Zhang, Wei; Wildonger, Jill; Jan, Lily Yeh; Jan, Yuh Nung

2014-09-01

A complex array of genetic factors regulates neuronal dendrite morphology. Epigenetic regulation of gene expression represents a plausible mechanism to control pathways responsible for specific dendritic arbor shapes. By studying the Drosophila dendritic arborization (da) neurons, we discovered a role of the double-bromodomain and extraterminal (BET) family proteins in regulating dendrite arbor complexity. A loss-of-function mutation in the single Drosophila BET protein encoded by female sterile 1 homeotic [fs(1)h] causes loss of fine, terminal dendritic branches. Moreover, fs(1)h is necessary for the induction of branching caused by a previously identified transcription factor, Cut (Ct), which regulates subtype-specific dendrite morphology. Finally, disrupting fs(1)h function impairs the mechanosensory response of class III da sensory neurons without compromising the expression of the ion channel NompC, which mediates the mechanosensitive response. Thus, our results identify a novel role for BET family proteins in regulating dendrite morphology and a possible separation of developmental pathways specifying neural cell morphology and ion channel expression. Since the BET proteins are known to bind acetylated histone tails, these results also suggest a role of epigenetic histone modifications and the "histone code," in regulating dendrite morphology. © 2014 Bagley et al.; Published by Cold Spring Harbor Laboratory Press.

Mapping the primary structure of copper/topaquinone-containing methylamine oxidase from Aspergillus niger.

PubMed

Lenobel, R; Sebela, M; Frébort, I

2005-01-01

The amino acid sequence of methylamine oxidase (MeAO) from the fungus Aspergillus niger was analyzed using mass spectrometry (MS). First, MeAO was characterized by an accurate molar mass of 72.4 kDa of the monomer measured using MALDI-TOF-MS and by a pI value of 5.8 determined by isoelectric focusing. MALDI-TOF-MS revealed a clear peptide mass fingerprint after tryptic digestion, which did not provide any relevant hit when searched against a nonredundant protein database and was different from that of A. niger amine oxidase AO-I. Tandem mass spectrometry with electrospray ionization coupled to liquid chromatography allowed unambiguous reading of six peptide sequences (11-19 amino acids) and seven sequence tags (4-15 amino acids), which were used for MS BLAST homology searching. MeAO was found to be largely homologous to a hypothetical protein AN7641.2 (EMBL/GenBank protein-accession code EAA61827) from Aspergillus nidulans FGSC A4 with a theoretical molar mass of 76.46 kDa and pI 6.14, which belongs to the superfamily of copper amine oxidases. The protein AN7641.2 is only little homologous to the amine oxidase AO-I (32% identity, 49 % similarity).

Anthrax toxin.

PubMed

Bhatnagar, R; Batra, S

2001-01-01

Anthrax is primarily a disease of herbivores caused by gram-positive, aerobic, spore-forming Bacillus anthracis. Humans are accidental hosts through the food of animal origin and animal products. Anthrax is prevelant in most parts of the globe, and cases of anthrax have been reported from almost every country. Three forms of the disease have been recognized: cutaneous (through skin), gastrointestinal (through alimentary tract), and pulmonary (by inhalation of spores). The major virulence factors of Bacillus anthracis are a poly-D glutamic acid capsule and a three-component protein exotoxin. The genes coding for the toxin and the enzymes responsible for capsule production are carried on plasmid pXO1 and pXO2, respectively. The three proteins of the exotoxin are protective antigen (PA, 83 kDa), lethal factor (LF, 90 kDa), and edema factor (EF, 89 kDa). The toxins follow the A-B model with PA being the B moeity and LF/EF, the alternative A moeities. LF and EF are individually nontoxic, but in combination with PA form two toxins causing different pathogenic responses in animals and cultured cells. PA + LF forms the lethal toxin and PA + EF forms the edema toxin. During the process of intoxication, PA binds to the cell surface receptor and is cleaved at the sequence RKKR (167) by cell surface proteases such as furin generating a cell-bound, C-terminal 63 kDa protein (PA63). PA63 possesses a binding site to which LF or EF bind with high affinity. The complex is then internalized by receptor-mediated endocytosis. Acidification of the vesicle leads to instertion of PA63 into the endosomal membrane and translocation of LF/EF across the bilayer into the cytosol where they exert their toxic effects. EF has a calcium- and calmodulin-dependent adenylate cyclase activity. Recent reports indicate that LF is a protease that cleaves the amino terminus of mitogen-activated protein kinase kinases 1 and 2 (MAPKK1 and 2), and this cleavage inactivates MAPKK1 and thus inhibits the mitogen-activated protein kinase signal transduction pathway. We describe in detail the studies so far done on unraveling the molecular mechanisms of pathogenesis of Bacillus anthracis.

Crisp proteins and sperm chemotaxis: discovery in amphibians and explorations in mammals.

PubMed

Burnett, Lindsey A; Xiang, Xueyu; Bieber, Allan L; Chandler, Douglas E

2008-01-01

Crisp proteins appear to play multiple roles in the life history of sperm. One of these roles is to act as a sperm chemoattractant. Allurin, a 21 kDa Crisp protein rapidly released from the egg jelly of at least two frogs, X. laevis and X. tropicalis, elicits directed motility in both homospecific and heterospecific sperm. In X. tropicalis, allurin is coded for by the newly documented Crisp A gene. Recently, the observation that allurin can also elicit chemotaxis in mouse sperm raises the question of whether allurin-like proteins might act as sperm chemoattractants in mammals. Although an allurin gene has yet to be documented in mammals, Crisp proteins truncated post-translationally appear to exist in both the male and female reproductive tract of mammals.

Identification of a novel herpes simplex virus type 1 transcript and protein (AL3) expressed during latency.

PubMed

Jaber, Tareq; Henderson, Gail; Li, Sumin; Perng, Guey-Chuen; Carpenter, Dale; Wechsler, Steven L; Jones, Clinton

2009-10-01

The herpes simplex virus type 1 (HSV-1) latency-associated transcript (LAT) is abundantly expressed in latently infected sensory neurons. In small animal models of infection, expression of the first 1.5 kb of LAT coding sequences is necessary and sufficient for wild-type reactivation from latency. The ability of LAT to inhibit apoptosis is important for reactivation from latency. Within the first 1.5 kb of LAT coding sequences and LAT promoter sequences, additional transcripts have been identified. For example, the anti-sense to LAT transcript (AL) is expressed in the opposite direction to LAT from the 5' end of LAT and LAT promoter sequences. In addition, the upstream of LAT (UOL) transcript is expressed in the LAT direction from sequences in the LAT promoter. Further examination of the first 1.5 kb of LAT coding sequences revealed two small ORFs that are anti-sense with respect to LAT (AL2 and AL3). A transcript spanning AL3 was detected in productively infected cells, mouse neuroblastoma cells stably expressing LAT and trigeminal ganglia (TG) of latently infected mice. Peptide-specific IgG directed against AL3 specifically recognized a protein migrating near 15 kDa in cells stably transfected with LAT, mouse neuroblastoma cells transfected with a plasmid containing the AL3 ORF and TG of latently infected mice. The inability to detect the AL3 protein during productive infection may have been because the 5' terminus of the AL3 transcript was downstream of the first in-frame methionine of the AL3 ORF during productive infection.

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010

DOE Office of Scientific and Technical Information (OSTI.GOV)

Klenk, Hans-Peter; Lapidus, Alla L.; Chertkov, Olga

Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S se- quence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2T as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analy- sis-hampering cultivation conditions and poormore » growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2T (= DSM 2912 = NBRC 15312) and propose its reclassi- fication as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.« less

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.

PubMed

Klenk, Hans-Peter; Lapidus, Alla; Chertkov, Olga; Copeland, Alex; Del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan-Fang; Han, Cliff; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Pati, Amrita; Ivanova, Natalia; Mavromatis, Konstantinos; Daum, Chris; Chen, Amy; Palaniappan, Krishna; Chang, Yun-Juan; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D; Detter, John C; Rohde, Manfred; Abt, Birte; Pukall, Rüdiger; Göker, Markus; Bristow, James; Markowitz, Victor; Hugenholtz, Philip; Eisen, Jonathan A

2011-10-15

Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S sequence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2 as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analysis-hampering cultivation conditions and poor growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2T (= DSM 2912 = NBRC 15312) and propose its reclassification as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AoS28D, a proline-Xaa carboxypeptidase secreted by Aspergillus oryzae.

PubMed

Salamin, Karine; Eugster, Philippe J; Jousson, Olivier; Waridel, Patrice; Grouzmann, Eric; Monod, Michel

2017-05-01

Prolyl peptidases of the MEROPS S28 family are of particular interest because they are key enzymes in the digestion of proline-rich peptides. A BLAST analysis of the Aspergillus oryzae genome revealed sequences coding for four proteases of the S28 family. Three of these proteases, AoS28A, AoS28B, and AoS28C, were previously characterized as acidic prolyl endopeptidases. The fourth protease, AoS28D, showed high sequence divergence with other S28 proteases and belongs to a phylogenetically distinct cluster together with orthologous proteases from other Aspergillus species. The objective of the present paper was to characterize AoS28D protease in terms of substrate specificity and activity. AoS28D produced by gene overexpression in A. oryzae and in Pichia pastoris was a 70-kDa glycoprotein with a 10-kDa sugar moiety. In contrast with other S28 proteases, AoS28D did not hydrolyze internal Pro-Xaa bonds of several tested peptides. Similarly, to human lysosomal Pro-Xaa carboxypeptidase, AoS28D demonstrated selectivity for cleaving C-terminal Pro-Xaa bonds which are resistant to carboxypeptidases of the S10 family concomitantly secreted by A. oryzae. Therefore, AoS28D could act in synergy with these enzymes during sequential degradation of a peptide from its C-terminus.

The Unique Biosynthetic Route from Lupinus β-Conglutin Gene to Blad

PubMed Central

Monteiro, Sara; Freitas, Regina; Rajasekhar, Baru T.; Teixeira, Artur R.; Ferreira, Ricardo B.

2010-01-01

Background During seed germination, β-conglutin undergoes a major cycle of limited proteolysis in which many of its constituent subunits are processed into a 20 kDa polypeptide termed blad. Blad is the main component of a glycooligomer, accumulating exclusively in the cotyledons of Lupinus species, between days 4 and 12 after the onset of germination. Principal Findings The sequence of the gene encoding β-conglutin precursor (1791 nucleotides) is reported. This gene, which shares 44 to 57% similarity and 20 to 37% identity with other vicilin-like protein genes, includes several features in common with these globulins, but also specific hallmarks. Most notable is the presence of an ubiquitin interacting motif (UIM), which possibly links the unique catabolic route of β-conglutin to the ubiquitin/proteasome proteolytic pathway. Significance Blad forms through a unique route from and is a stable intermediary product of its precursor, β-conglutin, the major Lupinus seed storage protein. It is composed of 173 amino acid residues, is encoded by an intron-containing, internal fragment of the gene that codes for β-conglutin precursor (nucleotides 394 to 913) and exhibits an isoelectric point of 9.6 and a molecular mass of 20,404.85 Da. Consistent with its role as a storage protein, blad contains an extremely high proportion of the nitrogen-rich amino acids. PMID:20066045

Parallel processor for real-time structural control

NASA Astrophysics Data System (ADS)

Tise, Bert L.

1993-07-01

A parallel processor that is optimized for real-time linear control has been developed. This modular system consists of A/D modules, D/A modules, and floating-point processor modules. The scalable processor uses up to 1,000 Motorola DSP96002 floating-point processors for a peak computational rate of 60 GFLOPS. Sampling rates up to 625 kHz are supported by this analog-in to analog-out controller. The high processing rate and parallel architecture make this processor suitable for computing state-space equations and other multiply/accumulate-intensive digital filters. Processor features include 14-bit conversion devices, low input-to-output latency, 240 Mbyte/s synchronous backplane bus, low-skew clock distribution circuit, VME connection to host computer, parallelizing code generator, and look- up-tables for actuator linearization. This processor was designed primarily for experiments in structural control. The A/D modules sample sensors mounted on the structure and the floating- point processor modules compute the outputs using the programmed control equations. The outputs are sent through the D/A module to the power amps used to drive the structure's actuators. The host computer is a Sun workstation. An OpenWindows-based control panel is provided to facilitate data transfer to and from the processor, as well as to control the operating mode of the processor. A diagnostic mode is provided to allow stimulation of the structure and acquisition of the structural response via sensor inputs.

Paramyosin from the parasitic mite Sarcoptes scabiei: cDNA cloning and heterologous expression.

PubMed

Mattsson, J G; Ljunggren, E L; Bergström, K

2001-05-01

The burrowing mite Sarcoptes scabiei is the causative agent of the highly contagious disease sarcoptic mange or scabies. So far, there is no in vitro propagation system for S. scabiei available, and mites used for various purposes must be isolated from infected hosts. Lack of parasite-derived material has limited the possibilities to study several aspects of scabies, including pathogenesis and immunity. It has also hampered the development of high performance serological assays. We have now constructed an S. scabiei cDNA expression library with mRNA purified from mites isolated from red foxes. Immunoscreening of the library enabled us to clone a full-length cDNA coding for a 102.5 kDa protein. Sequence similarity searches identified the protein as a paramyosin. Recombinant S. scabiei paramyosin expressed in Escherichia coli was recognized by sera from dogs and swine infected with S. scabiei. We also designed a small paramyosin construct of about 17 kDa that included the N-terminal part, an evolutionary variable part of the helical core, and the C-terminal part of the molecule. The miniaturized protein was efficiently expressed in E. coli and was recognized by sera from immunized rabbits. These data demonstrate that the cDNA library can assist in the isolation of important S. scabiei antigens and that recombinant proteins can be useful for the study of scabies.

Isolation and characterization of bacteriocinogenic lactic bacteria from M-Tuba and Tepache, two traditional fermented beverages in México

PubMed Central

de la Fuente-Salcido, Norma M; Castañeda-Ramírez, José Cristobal; García-Almendárez, Blanca E; Bideshi, Dennis K; Salcedo-Hernández, Rubén; Barboza-Corona, José E

2015-01-01

Mexican Tuba (M-Tuba) and Tepache are Mexican fermented beverages prepared mainly with pineapple pulp and coconut palm, respectively. At present, reports on the microbiota and nutritional effects of both beverages are lacking. The purpose of this study was to determine whether M-Tuba and Tepache contain cultivable lactic acid bacteria (LAB) capable of producing bacteriocins. Tepache and M-Tuba contain mesophilic aerobic bacteria, LAB, and yeast. Bacillus subtilis, Listeria monocytogenes, Listeria innocua, Streptococcus agalactiae, Staphylococcus aureus, Escherichia coli, Klebsiella pneumoniae, Salmonella typhimurium, and Salmonella spp, were the microorganisms most susceptible to metabolites produced by bacterial isolates. M-Tuba and Tepache contain bacteria that harbor genes coding for nisin and enterocin, but not pediocin. The presence of Lactococcus lactis and E. faecium in M-Tuba and Tepache, was identified by 16S rDNA. These bacteria produced bacteriocins of ∼3.5 kDa and 4.0–4.5 kDa, respectively. Partial purified bacteriocins showed inhibitory effect against Micrococcus luteus, L. monocytogenes, L. innocua, Str. agalactiae, S. aureus, Bacillus cereus, B. subtilis, E. faecalis, and K. pneumoniae. We characterized, for the first time, cultivable microbiota of M-Tuba and Tepache, and specifically, identified candidate lactic bacteria (LAB) present in these beverages that were capable of synthesizing antimicrobial peptides, which collectively could provide food preservative functions. PMID:26405529

Identification of Group B Streptococcal Sip Protein, Which Elicits Cross-Protective Immunity

PubMed Central

Brodeur, Bernard R.; Boyer, Martine; Charlebois, Isabelle; Hamel, Josée; Couture, France; Rioux, Clément R.; Martin, Denis

2000-01-01

A protein of group B streptococci (GBS), named Sip for surface immunogenic protein, which is distinct from previously described surface proteins, was identified after immunological screening of a genomic library. Immunoblots using a Sip-specific monoclonal antibody indicated that a protein band with an approximate molecular mass of 53 kDa which did not vary in size was present in every GBS strain tested. Representatives of all nine GBS serotypes were included in the panel of strains. Cloning and sequencing of the sip gene revealed an open reading frame of 1,305 nucleotides coding for a polypeptide of 434 amino acid residues, with a calculated pI of 6.84 and molecular mass of 45.5 kDa. Comparison of the nucleotide sequences from six different strains confirmed with 98% identity that the sip gene is highly conserved among GBS isolates. N-terminal amino acid sequencing also indicated the presence of a 25-amino-acid signal peptide which is cleaved in the mature protein. More importantly, immunization with the recombinant Sip protein efficiently protected CD-1 mice against deadly challenges with six GBS strains of serotypes Ia/c, Ib, II/R, III, V, and VI. The data presented in this study suggest that this highly conserved protein induces cross-protective immunity against GBS infections and emphasize its potential as a universal vaccine candidate. PMID:10992461

Alkylation damage repair protein O6-alkylguanine-DNA alkyltransferase from the hyperthermophiles Aquifex aeolicus and Archaeoglobus fulgidus.

PubMed Central

Kanugula, Sreenivas; Pegg, Anthony E

2003-01-01

AGT (O6-alkylguanine DNA alkyltransferase) is an important DNA-repair protein that protects cells from killing and mutagenesis by alkylating agents. The AGT genes from two extremely thermophilic organisms, the bacterium Aquifex aeolicus and the archaeon Archaeoglobus fulgidus were PCR-derived and cloned into an expression vector. The nucleotide sequence of the Aq. aeolicus AGT encodes a 201-amino-acid protein with a molecular mass of 23000 Da and Ar. fulgidus AGT codes for a 147-amino-acid protein with a molecular mass of 16718 Da. The Aq. aeolicus and Ar. fulgidus AGTs were expressed at high levels in Escherichia coli fused to an N-terminal polyhistidine tag that allowed single-step isolation and purification by metal-affinity chromatography. Both AGTs formed inclusion bodies and were not soluble under native purification conditions. Therefore AGT isolation was performed under protein-denaturation conditions in the presence of 8.0 M urea. Soluble AGT was obtained by refolding the AGT in the presence of calf thymus DNA. Both AGTs were active in repairing O6-methylguanine and, at a lower rate, O4-methylthymine in DNA. They exhibited thermostability and optimum activity at high temperature. The thermostable AGTs, particularly that from Aq. aeolicus, were readily inactivated by the low-molecular-mass inhibitor O6-benzylguanine, which is currently in clinical trials to enhance cancer chemotherapy. PMID:12892560

Molecular Characterization and Potential Synthetic Applications of GH1 β-Glucosidase from Higher Termite Microcerotermes annandalei.

PubMed

Arthornthurasuk, Siriphan; Jenkhetkan, Wantha; Suwan, Eukote; Chokchaichamnankit, Daranee; Srisomsap, Chantragan; Wattana-Amorn, Pakorn; Svasti, Jisnuson; Kongsaeree, Prachumporn T

2018-05-19

A novel β-glucosidase from higher termite Microcerotermes annandalei (MaBG) was obtained via a screening method targeting β-glucosidases with increased activities in the presence of glucose. The purified natural MaBG showed a subunit molecular weight of 55 kDa and existed in a native form as a dimer without any glycosylation. Gene-specific primers designed from its partial amino acid sequences were used to amplify the corresponding 1,419-bp coding sequence of MaBG which encodes a 472-amino acid glycoside hydrolase family 1 (GH1) β-glucosidase. When expressed in Komagataella pastoris, the recombinant MaBG appeared as a ~ 55-kDa protein without glycosylation modifications. Kinetic parameters as well as the lack of secretion signal suggested that MaBG is an intracellular enzyme and not involved in cellulolysis. The hydrolytic activities of MaBG were enhanced in the presence of up to 3.5-4.5 M glucose, partly due to its strong transglucosylation activity, which suggests its applicability in biosynthetic processes. The potential synthetic activities of the recombinant MaBG were demonstrated in the synthesis of para-nitrophenyl-β-D-gentiobioside via transglucosylation and octyl glucoside via reverse hydrolysis. The information obtained from this study has broadened our insight into the functional characteristics of this variant of termite GH1 β-glucosidase and its applications in bioconversion and biotechnology.

Roles of the 15-kDa Selenoprotein (Sep15) in Redox Homeostasis and Cataract Development Revealed by the Analysis of Sep 15 Knockout Mice*

PubMed Central

Kasaikina, Marina V.; Fomenko, Dmitri E.; Labunskyy, Vyacheslav M.; Lachke, Salil A.; Qiu, Wenya; Moncaster, Juliet A.; Zhang, Jie; Wojnarowicz, Mark W.; Natarajan, Sathish Kumar; Malinouski, Mikalai; Schweizer, Ulrich; Tsuji, Petra A.; Carlson, Bradley A.; Maas, Richard L.; Lou, Marjorie F.; Goldstein, Lee E.; Hatfield, Dolph L.; Gladyshev, Vadim N.

2011-01-01

The 15-kDa selenoprotein (Sep15) is a thioredoxin-like, endoplasmic reticulum-resident protein involved in the quality control of glycoprotein folding through its interaction with UDP-glucose:glycoprotein glucosyltransferase. Expression of Sep15 is regulated by dietary selenium and the unfolded protein response, but its specific function is not known. In this study, we developed and characterized Sep15 KO mice by targeted removal of exon 2 of the Sep15 gene coding for the cysteine-rich UDP-glucose:glycoprotein glucosyltransferase-binding domain. These KO mice synthesized a mutant mRNA, but the shortened protein product could be detected neither in tissues nor in Sep15 KO embryonic fibroblasts. Sep15 KO mice were viable and fertile, showed normal brain morphology, and did not activate endoplasmic reticulum stress pathways. However, parameters of oxidative stress were elevated in the livers of these mice. We found that Sep15 mRNA was enriched during lens development. Further phenotypic characterization of Sep15 KO mice revealed a prominent nuclear cataract that developed at an early age. These cataracts did not appear to be associated with severe oxidative stress or glucose dysregulation. We suggest that the cataracts resulted from an improper folding status of lens proteins caused by Sep15 deficiency. PMID:21768092

Orbits for 18 Visual Binaries and Two Double-line Spectroscopic Binaries Observed with HRCAM on the CTIO SOAR 4 m Telescope, Using a New Bayesian Orbit Code Based on Markov Chain Monte Carlo

NASA Astrophysics Data System (ADS)

Mendez, Rene A.; Claveria, Ruben M.; Orchard, Marcos E.; Silva, Jorge F.

2017-11-01

We present orbital elements and mass sums for 18 visual binary stars of spectral types B to K (five of which are new orbits) with periods ranging from 20 to more than 500 yr. For two double-line spectroscopic binaries with no previous orbits, the individual component masses, using combined astrometric and radial velocity data, have a formal uncertainty of ˜ 0.1 {M}⊙ . Adopting published photometry and trigonometric parallaxes, plus our own measurements, we place these objects on an H-R diagram and discuss their evolutionary status. These objects are part of a survey to characterize the binary population of stars in the Southern Hemisphere using the SOAR 4 m telescope+HRCAM at CTIO. Orbital elements are computed using a newly developed Markov chain Monte Carlo (MCMC) algorithm that delivers maximum-likelihood estimates of the parameters, as well as posterior probability density functions that allow us to evaluate the uncertainty of our derived parameters in a robust way. For spectroscopic binaries, using our approach, it is possible to derive a self-consistent parallax for the system from the combined astrometric and radial velocity data (“orbital parallax”), which compares well with the trigonometric parallaxes. We also present a mathematical formalism that allows a dimensionality reduction of the feature space from seven to three search parameters (or from 10 to seven dimensions—including parallax—in the case of spectroscopic binaries with astrometric data), which makes it possible to explore a smaller number of parameters in each case, improving the computational efficiency of our MCMC code. Based on observations obtained at the Southern Astrophysical Research (SOAR) telescope, which is a joint project of the Ministério da Ciência, Tecnologia, e Inovação (MCTI) da República Federativa do Brasil, the U.S. National Optical Astronomy Observatory (NOAO), the University of North Carolina at Chapel Hill (UNC), and Michigan State University (MSU).

Computational modeling and functional analysis of Herpes simplex virus type-1 thymidine kinase and Escherichia coli cytosine deaminase fusion protein

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Jufeng; Wang, Zhanli; Wei, Fang

2007-08-17

Herpes simplex virus type-1 thymidine kinase (HSV-1TK) and Escherichia coli cytosine deaminase (CD) fusion protein was designed using InsightII software. The structural rationality of the fusion proteins incorporating a series of flexible linker peptide was analyzed, and a suitable linker peptide was chosen for further investigated. The recombinant plasmid containing the coding regions of HSV-1TK and CD cDNA connected by this linker peptide coding sequence was generated and subsequently transfected into the human embryonic kidney 293 cells (HEK293). The Western blotting indicated that the recombinant fusion protein existed as a dimer with a molecular weight of approximately 90 kDa. Themore » toxicity of the prodrug on the recombinant plasmid-transfected human lung cancer cell line NCIH460 was evaluated, which showed that TKglyCD-expressing cells conferred upon cells prodrug sensitivities equivalent to that observed for each enzyme independently. Most noteworthy, cytotoxicity could be enhanced by concurrently treating TKglyCD-expressing cells with prodrugs GCV and 5-FC. The results indicate that we have successfully constructed a HSV-1TKglyCD fusion gene which might have a potential application for cancer gene therapy.« less

Sequencing and Characterization of Novel PII Signaling Protein Gene in Microalga Haematococcus pluvialis.

PubMed

Ma, Ruijuan; Li, Yan; Lu, Yinghua

2017-10-11

The PII signaling protein is a key protein for controlling nitrogen assimilatory reactions in most organisms, but little information is reported on PII proteins of green microalga Haematococcus pluvialis . Since H. pluvialis cells can produce a large amount of astaxanthin upon nitrogen starvation, its PII protein may represent an important factor on elevated production of Haematococcus astaxanthin. This study identified and isolated the coding gene (Hp GLB1 ) from this microalga. The full-length of Hp GLB1 was 1222 bp, including 621 bp coding sequence (CDS), 103 bp 5' untranslated region (5' UTR), and 498 bp 3' untranslated region (3' UTR). The CDS could encode a protein with 206 amino acids (HpPII). Its calculated molecular weight (Mw) was 22.4 kDa and the theoretical isoelectric point was 9.53. When H. pluvialis cells were exposed to nitrogen starvation, the Hp GLB1 expression was increased 2.46 times in 48 h, concomitant with the raise of astaxanthin content. This study also used phylogenetic analysis to prove that HpPII was homogeneous to the PII proteins of other green microalgae. The results formed a fundamental basis for the future study on HpPII, for its potential physiological function in Haematococcus astaxanthin biosysthesis.

Melanin production by Rhizobium meliloti GR4 is linked to nonsymbiotic plasmid pRmeGR4b: cloning, sequencing, and expression of the tyrosinase gene mepA.

PubMed Central

Mercado-Blanco, J; García, F; Fernández-López, M; Olivares, J

1993-01-01

Melanin production by Rhizobium meliloti GR4 is linked to nonsymbiotic plasmid pRmeGR4b (140 MDa). Transfer of this plasmid to GR4-cured derivatives or to Agrobacterium tumefaciens enables these bacteria to produce melanin. Sequence analysis of a 3.5-kb PstI fragment of plasmid pRmeGR4b has revealed the presence of a open reading frame 1,481-bp that codes for a protein whose sequence shows strong homology to two conserved regions involved in copper binding in tyrosinases and hemocyanins. In vitro-coupled transcription-translation experiments showed that this open reading frame codes for a 55-kDa polypeptide. Melanin production in GR4 is not under the control of the RpoN-NifA regulatory system, unlike that in R. leguminosarum bv. phaseoli 8002. The GR4 tyrosinase gene could be expressed in Escherichia coli under the control of the lacZ promoter. For avoiding confusion with mel genes (for melibiose), a change of the name of the previously reported mel genes of R. leguminosarum bv. phaseoli and other organisms to mep genes (for melanin production) is proposed. Images PMID:8366027

Smooth Particle Hydrodynamics GPU-Acceleration Tool for Asteroid Fragmentation Simulation

NASA Astrophysics Data System (ADS)

Buruchenko, Sergey K.; Schäfer, Christoph M.; Maindl, Thomas I.

2017-10-01

The impact threat of near-Earth objects (NEOs) is a concern to the global community, as evidenced by the Chelyabinsk event (caused by a 17-m meteorite) in Russia on February 15, 2013 and a near miss by asteroid 2012 DA14 ( 30 m diameter), on the same day. The expected energy, from either a low-altitude air burst or direct impact, would have severe consequences, especially in populated regions. To mitigate this threat one of the methods is employment of large kinetic-energy impactors (KEIs). The simulation of asteroid target fragmentation is a challenging task which demands efficient and accurate numerical methods with large computational power. Modern graphics processing units (GPUs) lead to a major increase 10 times and more in the performance of the computation of astrophysical and high velocity impacts. The paper presents a new implementation of the numerical method smooth particle hydrodynamics (SPH) using NVIDIA-GPU and the first astrophysical and high velocity application of the new code. The code allows for a tremendous increase in speed of astrophysical simulations with SPH and self-gravity at low costs for new hardware. We have implemented the SPH equations to model gas, liquids and elastic, and plastic solid bodies and added a fragmentation model for brittle materials. Self-gravity may be optionally included in the simulations.

Characterization of petunia flower mottle virus (PetFMV), a new potyvirus infecting Petunia x hybrida.

PubMed

Feldhoff, A; Wetzel, T; Peters, D; Kellner, R; Krczal, G

1998-01-01

With the introduction of cutting-grown Petunia x hybrida plants on the European market, a new potyvirus which showed no serological reaction with antisera against any other potyviruses infecting petunias was discovered. Infected leaves contained flexuous rod-shaped virus particles of 750-800 nm in length and inclusion bodies (pinwheel structures) typical for potyviruses in ultrathin leaf sections. The purified coat protein with a Mr of approximately 36 kDa could be detected in Western immunoblots with a specific antibody to the coat protein of the petunia-infecting virus. The 3' end of the viral genome encompassing the 3' non-coding region, the coat protein gene, and part of the NIb gene was amplified from infected leaf material by IC/PCR using degenerate and specific primers. Sequences of PCR-generated cDNA clones were compared to other known sequences of potyviruses. Maximum homology of 56% was found in the 3' non-coding region between the petunia isolate and other potyviruses. A maximum homology of 69% was found between the amino acid sequence of the coat protein of the petunia isolate and corresponding sequences of other potyviruses. These data indicate that the petunia-infecting virus is a previously undescribed potyvirus and the name petunia flower mottle virus (PetFMV) is suggested.

Molecular architecture of silk fibroin of Indian golden silkmoth, Antheraea assama.

PubMed

Gupta, Adarsh K; Mita, Kazuei; Arunkumar, Kallare P; Nagaraju, Javaregowda

2015-08-03

The golden silk spun by Indian golden silkmoth Antheraea assama, is regarded for its shimmering golden luster, tenacity and value as biomaterial. This report describes the gene coding for golden silk H-fibroin (AaFhc), its expression, full-length sequence and structurally important motifs discerning the underlying genetic and biochemical factors responsible for its much sought-after properties. The coding region, with biased isocodons, encodes highly repetitious crystalline core, flanked by a pair of 5' and 3' non-repetitious ends. AaFhc mRNA expression is strictly territorial, confined to the posterior silk gland, encoding a protein of size 230 kDa, which makes homodimers making the elementary structural units of the fibrous core of the golden silk. Characteristic polyalanine repeats that make tight β-sheet crystals alternate with non-polyalanine repeats that make less orderly antiparallel β-sheets, β-turns and partial α-helices. Phylogenetic analysis of the conserved N-terminal amorphous motif and the comparative analysis of the crystalline region with other saturniid H-fibroins reveal that AaFhc has longer, numerous and relatively uniform repeat motifs with lower serine content that assume tighter β-crystals and denser packing, which are speculated to be responsible for its acclaimed properties of higher tensile strength and higher refractive index responsible for golden luster.

Ixodes ricinus Tick Lipocalins: Identification, Cloning, Phylogenetic Analysis and Biochemical Characterization

PubMed Central

Beaufays, Jérôme; Adam, Benoît; Decrem, Yves; Prévôt, Pierre-Paul; Santini, Sébastien; Brasseur, Robert; Brossard, Michel; Lins, Laurence

2008-01-01

Background During their blood meal, ticks secrete a wide variety of proteins that interfere with their host's defense mechanisms. Among these proteins, lipocalins play a major role in the modulation of the inflammatory response. Methodology/Principal Findings Screening a cDNA library in association with RT-PCR and RACE methodologies allowed us to identify 14 new lipocalin genes in the salivary glands of the Ixodes ricinus hard tick. A computational in-depth structural analysis confirmed that LIRs belong to the lipocalin family. These proteins were called LIR for “Lipocalin from I. ricinus” and numbered from 1 to 14 (LIR1 to LIR14). According to their percentage identity/similarity, LIR proteins may be assigned to 6 distinct phylogenetic groups. The mature proteins have calculated pM and pI varying from 21.8 kDa to 37.2 kDa and from 4.45 to 9.57 respectively. In a western blot analysis, all recombinant LIRs appeared as a series of thin bands at 50–70 kDa, suggesting extensive glycosylation, which was experimentally confirmed by treatment with N-glycosidase F. In addition, the in vivo expression analysis of LIRs in I. ricinus, examined by RT-PCR, showed homogeneous expression profiles for certain phylogenetic groups and relatively heterogeneous profiles for other groups. Finally, we demonstrated that LIR6 codes for a protein that specifically binds leukotriene B4. Conclusions/Significance This work confirms that, regarding their biochemical properties, expression profile, and sequence signature, lipocalins in Ixodes hard tick genus, and more specifically in the Ixodes ricinus species, are segregated into distinct phylogenetic groups suggesting potential distinct function. This was particularly demonstrated by the ability of LIR6 to scavenge leukotriene B4. The other LIRs did not bind any of the ligands tested, such as 5-hydroxytryptamine, ADP, norepinephrine, platelet activating factor, prostaglandins D2 and E2, and finally leukotrienes B4 and C4. PMID:19096708

A hybrid approach to generating search subspaces in dynamically constrained 4-dimensional data assimilation

NASA Astrophysics Data System (ADS)

Yaremchuk, Max; Martin, Paul; Beattie, Christopher

2017-09-01

Development and maintenance of the linearized and adjoint code for advanced circulation models is a challenging issue, requiring a significant proportion of total effort in operational data assimilation (DA). The ensemble-based DA techniques provide a derivative-free alternative, which appears to be competitive with variational methods in many practical applications. This article proposes a hybrid scheme for generating the search subspaces in the adjoint-free 4-dimensional DA method (a4dVar) that does not use a predefined ensemble. The method resembles 4dVar in that the optimal solution is strongly constrained by model dynamics and search directions are supplied iteratively using information from the current and previous model trajectories generated in the process of optimization. In contrast to 4dVar, which produces a single search direction from exact gradient information, a4dVar employs an ensemble of directions to form a subspace in order to proceed. In the earlier versions of a4dVar, search subspaces were built using the leading EOFs of either the model trajectory or the projections of the model-data misfits onto the range of the background error covariance (BEC) matrix at the current iteration. In the present study, we blend both approaches and explore a hybrid scheme of ensemble generation in order to improve the performance and flexibility of the algorithm. In addition, we introduce balance constraints into the BEC structure and periodically augment the search ensemble with BEC eigenvectors to avoid repeating minimization over already explored subspaces. Performance of the proposed hybrid a4dVar (ha4dVar) method is compared with that of standard 4dVar in a realistic regional configuration assimilating real data into the Navy Coastal Ocean Model (NCOM). It is shown that the ha4dVar converges faster than a4dVar and can be potentially competitive with 4dvar both in terms of the required computational time and the forecast skill.

Restriction Fragment Length Polymorphisms of Virulence Plasmids in Rhodococcus equi

PubMed Central

Takai, Shinji; Shoda, Masato; Sasaki, Yukako; Tsubaki, Shiro; Fortier, Guillaume; Pronost, Stephane; Rahal, Karim; Becu, Teotimo; Begg, Angela; Browning, Glenn; Nicholson, Vivian M.; Prescott, John F.

1999-01-01

Virulent Rhodococcus equi, which is a well-known cause of pyogranulomatous pneumonia in foals, possesses a large plasmid encoding virulence-associated 15- to 17-kDa antigens. Foal and soil isolates from five countries—Argentina, Australia, Canada, France, and Japan—were investigated for the presence of 15- to 17-kDa antigens by colony blotting, using the monoclonal antibody 10G5, and the gene coding for 15- to 17-kDa antigens by PCR. Plasmid DNAs extracted from positive isolates were digested with restriction endonucleases BamHI, EcoRI, EcoT22I, and HindIII, and the digestion patterns that resulted divided the plasmids of virulent isolates into five closely related types. Three of the five types had already been reported in Canadian and Japanese isolates, and the two new types had been found in French and Japanese isolates. Therefore, we tentatively designated these five types 85-kb type I (pREAT701), 85-kb type II (a new type), 87-kb type I (EcoRI and BamHI type 2 [V. M. Nicholson and J. F. Prescott, J. Clin. Microbiol. 35:738–740, 1997]), 87-kb type II (a new type), and 90-kb (pREL1) plasmids. The 85-kb type I plasmid was found in isolates from Argentina, Australia, Canada, and France. Plasmid 87-kb type I was isolated in specimens from Argentina, Canada, and France. The 85-kb type II plasmid appeared in isolates from France. On the other hand, plasmids 87-kb type II and 90-kb were found only in isolates from Japan. These results revealed geographic differences in the distribution of the virulence plasmids found in the five countries and suggested that the restriction fragment length polymorphism of virulence plasmids might be useful to elucidate the molecular epidemiology of virulent R. equi in the world. PMID:10488224

Choosing the appropriate treatment setting: which information and decision-making needs do adult inpatients with mental disorders have? A qualitative interview study

PubMed Central

Kivelitz, Laura; Härter, Martin; Mohr, Jil; Melchior, Hanne; Goetzmann, Lutz; Warnke, Max Holger; Kleinschmidt, Silke; Dirmaier, Jörg

2018-01-01

Background Decisions on medical treatment setting are perceived as important but often difficult to make for patients with mental disorders. Shared decision-making as a strategy to decrease decisional conflict has been recommended, but is not yet widely implemented. This study aimed to investigate the information needs and the decision-making preferences of patients with mental disorders prior to the decision for a certain treatment setting. The results will serve as a prerequisite for the development of a high-quality patient decision aid (PtDA) regarding the treatment setting decision. Methods We conducted retrospective individual semi-structured interviews with n=24 patients with mental disorders in three psychotherapeutic inpatient care units. The interviews were audiotaped, transcribed, coded, and content-analyzed. Results The majority of the patients wanted to be involved in the decision-making process. They reported high information needs regarding treatment options in order to feel empowered to participate adequately in the decision for a certain treatment setting. However, some patients did not want to participate or receive information, for example, because of their high burden of mental disorder. Whereas the majority were satisfied with the extent they were involved in the decision, few participants felt sufficiently informed about treatment options. Most patients reported that a decision aid regarding an appropriate treatment setting would have been helpful for them. Important information that should be included in a PtDA was general information about mental illness, effective treatment options, specific information about the different treatment settings, and access to treatment. Discussion The identified information and decision-making needs provide a valuable basis for the development of a PtDA aiming to support patients and caregivers regarding the decision for an adequate treatment setting. As preferences for participation vary among patients and also depend on the current mental state, a flexible approach is needed to meet patients’ individual wishes and needs. PMID:29805250

aguA, the Gene Encoding an Extracellular α-Glucuronidase from Aspergillus tubingensis, Is Specifically Induced on Xylose and Not on Glucuronic Acid

PubMed Central

de Vries, Ronald P.; Poulsen, Charlotte H.; Madrid, Susan; Visser, Jaap

1998-01-01

An extracellular α-glucuronidase was purified and characterized from a commercial Aspergillus preparation and from culture filtrate of Aspergillus tubingensis. The enzyme has a molecular mass of 107 kDa as determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and 112 kDa as determined by mass spectrometry, has a determined pI just below 5.2, and is stable at pH 6.0 for prolonged times. The pH optimum for the enzyme is between 4.5 and 6.0, and the temperature optimum is 70°C. The α-glucuronidase is active mainly on small substituted xylo-oligomers but is also able to release a small amount of 4-O-methylglucuronic acid from birchwood xylan. The enzyme acts synergistically with endoxylanases and β-xylosidase in the hydrolysis of xylan. The enzyme is N glycosylated and contains 14 putative N-glycosylation sites. The gene encoding this α-glucuronidase (aguA) was cloned from A. tubingensis. It consists of an open reading frame of 2,523 bp and contains no introns. The gene codes for a protein of 841 amino acids, containing a eukaryotic signal sequence of 20 amino acids. The mature protein has a predicted molecular mass of 91,790 Da and a calculated pI of 5.13. Multiple copies of the gene were introduced in A. tubingensis, and expression was studied in a highly overproducing transformant. The aguA gene was expressed on xylose, xylobiose, and xylan, similarly to genes encoding endoxylanases, suggesting a coordinate regulation of expression of xylanases and α-glucuronidase. Glucuronic acid did not induce the expression of aguA and also did not modulate the expression on xylose. Addition of glucose prevented expression of aguA on xylan but only reduced the expression on xylose. PMID:9440512

Molecular cloning and expression of a chloride channel-associated protein pICln in human young red blood cells: association with actin.

PubMed

Schwartz, R S; Rybicki, A C; Nagel, R L

1997-10-15

We report the cloning and sequencing from human reticulocytes of cDNA coding for the Cl- channel-associated protein, pICln. Human reticulocyte pICln (HRpICln) cDNA encodes a protein (predicted molecular mass 26293Da) identical with human non-pigmented ciliary epithelial cell pICln. By using full-length HRpICln cDNA (approx. 1.2 kb) to probe human lymphocyte metaphase-chromosome spreads, the location of the human ICln gene was mapped to 11q13 by fluorescence in situ hybridization analysis. Polyclonal antibodies to recombinant HRpICln detected bands at approx. 43 kDa and approx. 37 kDa in both normal (AA) and sickle (SS) red blood cell (RBC) ghost membranes. In SS ghosts, and in ghosts from a patient with autoimmune haemolytic anaemia with 9.8% reticulocytes, the amount of HRpICln was increased compared with AA ghosts, suggesting that the expression or membrane assembly of HRpICln is cell age-dependent. Laser scanning confocal fluorescent microscopy immunolocalized HRpICln largely to the RBC membrane. The increased staining intensity of HRpICln in a reticulocyte-enriched AA RBC density-separated fraction is consistent with a dependence of HRpICln membrane content on cell age. HRpICln and beta-actin form stable complexes in vivo, demonstrated with the yeast two-hybrid system. Low-ionic-strength extraction of ghost membranes, which results in the extraction of the spectrin-actin cytoskeleton, also results in the extraction of HRpICln, consistent with the possibility for the association of these proteins in RBCs in vivo. The results presented here establish the presence of the Cl- channel-associated protein, pICln, in human RBCs, and raises the possibility that this protein has a role in RBC Cl- transport and volume regulation in young RBCs. Moreover the association of RBC pICln with actin offers a model in which to test interactions between RBC ion channels and the cytoskeleton.

aguA, the gene encoding an extracellular alpha-glucuronidase from Aspergillus tubingensis, is specifically induced on xylose and not on glucuronic acid.

PubMed

de Vries, R P; Poulsen, C H; Madrid, S; Visser, J

1998-01-01

An extracellular alpha-glucuronidase was purified and characterized from a commercial Aspergillus preparation and from culture filtrate of Aspergillus tubingensis. The enzyme has a molecular mass of 107 kDa as determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and 112 kDa as determined by mass spectrometry, has a determined pI just below 5.2, and is stable at pH 6.0 for prolonged times. The pH optimum for the enzyme is between 4.5 and 6.0, and the temperature optimum is 70 degrees C. The alpha-glucuronidase is active mainly on small substituted xylo-oligomers but is also able to release a small amount of 4-O-methylglucuronic acid from birchwood xylan. The enzyme acts synergistically with endoxylanases and beta-xylosidase in the hydrolysis of xylan. The enzyme is N glycosylated and contains 14 putative N-glycosylation sites. The gene encoding this alpha-glucuronidase (aguA) was cloned from A. tubingensis. It consists of an open reading frame of 2,523 bp and contains no introns. The gene codes for a protein of 841 amino acids, containing a eukaryotic signal sequence of 20 amino acids. The mature protein has a predicted molecular mass of 91,790 Da and a calculated pI of 5.13. Multiple copies of the gene were introduced in A. tubingensis, and expression was studied in a highly overproducing transformant. The aguA gene was expressed on xylose, xylobiose, and xylan, similarly to genes encoding endoxylanases, suggesting a coordinate regulation of expression of xylanases and alpha-glucuronidase. Glucuronic acid did not induce the expression of aguA and also did not modulate the expression on xylose. Addition of glucose prevented expression of aguA on xylan but only reduced the expression on xylose.

Choosing the appropriate treatment setting: which information and decision-making needs do adult inpatients with mental disorders have? A qualitative interview study.

PubMed

Kivelitz, Laura; Härter, Martin; Mohr, Jil; Melchior, Hanne; Goetzmann, Lutz; Warnke, Max Holger; Kleinschmidt, Silke; Dirmaier, Jörg

2018-01-01

Decisions on medical treatment setting are perceived as important but often difficult to make for patients with mental disorders. Shared decision-making as a strategy to decrease decisional conflict has been recommended, but is not yet widely implemented. This study aimed to investigate the information needs and the decision-making preferences of patients with mental disorders prior to the decision for a certain treatment setting. The results will serve as a prerequisite for the development of a high-quality patient decision aid (PtDA) regarding the treatment setting decision. We conducted retrospective individual semi-structured interviews with n=24 patients with mental disorders in three psychotherapeutic inpatient care units. The interviews were audiotaped, transcribed, coded, and content-analyzed. The majority of the patients wanted to be involved in the decision-making process. They reported high information needs regarding treatment options in order to feel empowered to participate adequately in the decision for a certain treatment setting. However, some patients did not want to participate or receive information, for example, because of their high burden of mental disorder. Whereas the majority were satisfied with the extent they were involved in the decision, few participants felt sufficiently informed about treatment options. Most patients reported that a decision aid regarding an appropriate treatment setting would have been helpful for them. Important information that should be included in a PtDA was general information about mental illness, effective treatment options, specific information about the different treatment settings, and access to treatment. The identified information and decision-making needs provide a valuable basis for the development of a PtDA aiming to support patients and caregivers regarding the decision for an adequate treatment setting. As preferences for participation vary among patients and also depend on the current mental state, a flexible approach is needed to meet patients' individual wishes and needs.

Standardization and validation of real time PCR assays for the diagnosis of histoplasmosis using three molecular targets in an animal model.

PubMed

López, Luisa F; Muñoz, César O; Cáceres, Diego H; Tobón, Ángela M; Loparev, Vladimir; Clay, Oliver; Chiller, Tom; Litvintseva, Anastasia; Gade, Lalitha; González, Ángel; Gómez, Beatriz L

2017-01-01

Histoplasmosis is considered one of the most important endemic and systemic mycoses worldwide. Until now few molecular techniques have been developed for its diagnosis. The aim of this study was to develop and evaluate three real time PCR (qPCR) protocols for different protein-coding genes (100-kDa, H and M antigens) using an animal model. Fresh and formalin-fixed and paraffin-embedded (FFPE) lung tissues from BALB/c mice inoculated i.n. with 2.5x106 Histoplasma capsulatum yeast or PBS were obtained at 1, 2, 3, 4, 8, 12 and 16 weeks post-infection. A collection of DNA from cultures representing different clades of H. capsulatum (30 strains) and other medically relevant pathogens (36 strains of related fungi and Mycobacterium tuberculosis) were used to analyze sensitivity and specificity. Analytical sensitivity and specificity were 100% when DNAs from the different strains were tested. The highest fungal burden occurred at first week post-infection and complete fungal clearance was observed after the third week; similar results were obtained when the presence of H. capsulatum yeast cells was demonstrated in histopathological analysis. In the first week post-infection, all fresh and FFPE lung tissues from H. capsulatum-infected animals were positive for the qPCR protocols tested except for the M antigen protocol, which gave variable results when fresh lung tissue samples were analyzed. In the second week, all qPCR protocols showed variable results for both fresh and FFPE tissues. Samples from the infected mice at the remaining times post-infection and uninfected mice (controls) were negative for all protocols. Good agreement was observed between CFUs, histopathological analysis and qPCR results for the 100-kDa and H antigen protocols. We successfully standardized and validated three qPCR assays for detecting H. capsulatum DNA in fresh and FFPE tissues, and conclude that the 100-kDa and H antigen molecular assays are promising tests for diagnosing this mycosis.

Vitellogenins Are New High Molecular Weight Components and Allergens (Api m 12 and Ves v 6) of Apis mellifera and Vespula vulgaris Venom

PubMed Central

Blank, Simon; Seismann, Henning; McIntyre, Mareike; Ollert, Markus; Wolf, Sara; Bantleon, Frank I.; Spillner, Edzard

2013-01-01

Background/Objectives Anaphylaxis due to hymenoptera stings is one of the most severe clinical outcomes of IgE-mediated hypersensitivity reactions. Although allergic reactions to hymenoptera stings are often considered as a general model for the underlying principles of allergic disease, venom immunotherapy is still hampered by severe systemic side effects and incomplete protection. The identification and detailed characterization of all allergens of hymenoptera venoms might result in an improvement in this field and promote the detailed understanding of the allergological mechanism. Our aim was the identification and detailed immunochemical and allergological characterization of the low abundant IgE-reactive 200 kDa proteins of Apis mellifera and Vespula vulgaris venom. Methods/Principal Findings Tandem mass spectrometry-based sequencing of a 200 kDa venom protein yielded peptides that could be assigned to honeybee vitellogenin. The coding regions of the honeybee protein as well as of the homologue from yellow jacket venom were cloned from venom gland cDNA. The newly identified 200 kDa proteins share a sequence identity on protein level of 40% and belong to the family of vitellogenins, present in all oviparous animals, and are the first vitellogenins identified as components of venom. Both vitellogenins could be recombinantly produced as soluble proteins in insect cells and assessed for their specific IgE reactivity. The particular vitellogenins were recognized by approximately 40% of sera of venom-allergic patients even in the absence of cross-reactive carbohydrate determinants. Conclusion With the vitellogenins of Apis mellifera and Vespula vulgaris venom a new homologous pair of venom allergens was identified and becomes available for future applications. Due to their allergenic properties the honeybee and the yellow jacket venom vitellogenin were designated as allergens Api m 12 and Ves v 6, respectively. PMID:23626765

76 FR 12627 - Airworthiness Directives; Diamond Aircraft Industries GmbH Models DA 42, DA 42 NG, and DA 42 M-NG...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-08

... Industries GmbH Models DA 42, DA 42 NG, and DA 42 M-NG Airplanes AGENCY: Federal Aviation Administration (FAA... on Diamond aeroplanes, the majority of which were DA 40. In additional, at least 18 doors have been... conditions) while the aeroplane was parked. All DA 40 and DA 42 aeroplanes have a system installed that...

Gene cloning and prokaryotic expression of recombinant flagellin A from Vibrio parahaemolyticus

NASA Astrophysics Data System (ADS)

Yuan, Ye; Wang, Xiuli; Guo, Sheping; Liu, Yang; Ge, Hui; Qiu, Xuemei

2010-11-01

The Gram-negative Vibrio parahaemolyticus is a common pathogen in humans and marine animals. Bacteria flagellins play an important role during infection and induction of the host immune response. Thus, flagellin proteins are an ideal target for vaccines. We amplified the complete flagellin subunit gene ( flaA) from V. parahaemolyticus ATCC 17802. We then cloned and expressed the gene into Escherichia coli BL21 (DE3) cells. The gene coded for a protein that was 62.78 kDa. We purified and characterized the protein using Ni-NTA affinity chromatography and Anti-His antibody Western blotting, respectively. Our results provide a basis for further studies into the utility of the FlaA protein as a vaccine candidate against infection by Vibrio parahaemolyticus. In addition, the purified FlaA protein can be used for further functional and structural studies.

Gene cloning and prokaryotic expression of recombinant outer membrane protein from Vibrio parahaemolyticus

NASA Astrophysics Data System (ADS)

Yuan, Ye; Wang, Xiuli; Guo, Sheping; Qiu, Xuemei

2011-06-01

Gram-negative Vibrio parahaemolyticus is a common pathogen in humans and marine animals. The outer membrane protein of bacteria plays an important role in the infection and pathogenicity to the host. Thus, the outer membrane proteins are an ideal target for vaccines. We amplified a complete outer membrane protein gene (ompW) from V. parahaemolyticus ATCC 17802. We then cloned and expressed the gene into Escherichia coli BL21 (DE3) cells. The gene coded for a protein that was 42.78 kDa. We purified the protein using Ni-NTA affinity chromatography and Anti-His antibody Western blotting, respectively. Our results provide a basis for future application of the OmpW protein as a vaccine candidate against infection by V. parahaemolyticus. In addition, the purified OmpW protein can be used for further functional and structural studies.

Crystal structure of reverse gyrase: insights into the positive supercoiling of DNA

PubMed Central

Rodríguez, A.Chapin; Stock, Daniela

2002-01-01

Reverse gyrase is the only topoisomerase known to positively supercoil DNA. The protein appears to be unique to hyperthermophiles, where its activity is believed to protect the genome from denaturation. The 120 kDa enzyme is the only member of the type I topoisomerase family that requires ATP, which is bound and hydrolysed by a helicase-like domain. We have determined the crystal structure of reverse gyrase from Archaeoglobus fulgidus in the presence and absence of nucleotide cofactor. The structure provides the first view of an intact supercoiling enzyme, explains mechanistic differences from other type I topoisomerases and suggests a model for how the two domains of the protein cooperate to positively supercoil DNA. Coordinates have been deposited in the Protein Data Bank under accession codes 1GKU and 1GL9. PMID:11823434

Artistic talent in dyslexia--a hypothesis.

PubMed

Chakravarty, Ambar

2009-10-01

The present article hints at a curious neurocognitive phenomenon of development of artistic talents in some children with dyslexia. The article also takes note of the phenomenon of creating in the midst of language disability as observed in the lives of such creative people like Leonardo da Vinci and Albert Einstein who were most probably affected with developmental learning disorders. It has been hypothesised that a developmental delay in the dominant hemisphere most likely 'disinhibits' the non-dominant parietal lobe to unmask talents, artistic or otherwise, in some such individuals. The present hypothesis follows the phenomenon of paradoxical functional facilitation described earlier. It has been suggested that children with learning disorders be encouraged to develop such hidden talents to full capacity, rather than be subjected to overemphasising on the correction of the disturbed coded symbol operations, in remedial training.

Local dynamic subgrid-scale models in channel flow

NASA Technical Reports Server (NTRS)

Cabot, William H.

1994-01-01

The dynamic subgrid-scale (SGS) model has given good results in the large-eddy simulation (LES) of homogeneous isotropic or shear flow, and in the LES of channel flow, using averaging in two or three homogeneous directions (the DA model). In order to simulate flows in general, complex geometries (with few or no homogeneous directions), the dynamic SGS model needs to be applied at a local level in a numerically stable way. Channel flow, which is inhomogeneous and wall-bounded flow in only one direction, provides a good initial test for local SGS models. Tests of the dynamic localization model were performed previously in channel flow using a pseudospectral code and good results were obtained. Numerical instability due to persistently negative eddy viscosity was avoided by either constraining the eddy viscosity to be positive or by limiting the time that eddy viscosities could remain negative by co-evolving the SGS kinetic energy (the DLk model). The DLk model, however, was too expensive to run in the pseudospectral code due to a large near-wall term in the auxiliary SGS kinetic energy (k) equation. One objective was then to implement the DLk model in a second-order central finite difference channel code, in which the auxiliary k equation could be integrated implicitly in time at great reduction in cost, and to assess its performance in comparison with the plane-averaged dynamic model or with no model at all, and with direct numerical simulation (DNS) and/or experimental data. Other local dynamic SGS models have been proposed recently, e.g., constrained dynamic models with random backscatter, and with eddy viscosity terms that are averaged in time over material path lines rather than in space. Another objective was to incorporate and test these models in channel flow.

Trends in corrected lung cancer mortality rates in Brazil and regions.

PubMed

Malta, Deborah Carvalho; Abreu, Daisy Maria Xavier de; Moura, Lenildo de; Lana, Gustavo C; Azevedo, Gulnar; França, Elisabeth

2016-06-27

To describe the trend in cancer mortality rates in Brazil and regions before and after correction for underreporting of deaths and redistribution of ill-defined and nonspecific causes. The study used data of deaths from lung cancer among the population aged from 30 to 69 years, notified to the Mortality Information System between 1996 and 2011, corrected for underreporting of deaths, non-registered sex and age , and causes with ill-defined or garbage codes according to sex, age, and region. Standardized rates were calculated by age for raw and corrected data. An analysis of time trend in lung cancer mortality was carried out using the regression model with autoregressive errors. Lung cancer in Brazil presented higher rates among men compared to women, and the South region showed the highest death risk in 1996 and 2011. Mortality showed a trend of reduction for males and increase for women. Lung cancer in Brazil presented different distribution patterns according to sex, with higher rates among men and a reduction in the mortality trend for men and increase for women. Descrever a tendência da mortalidade por câncer de pulmão no Brasil e regiões, antes e após as correções por sub-registro de óbitos, redistribuição de causas mal definidas e causas inespecíficas. Foram utilizados dados de óbitos por câncer de pulmão da população de 30 a 69 anos, notificados ao Sistema de Informação sobre Mortalidade, entre 1996 e 2011, corrigidos para sub-registro de óbitos, declaração de sexo e idade ignorados e causas com códigos mal definidos e inespecíficos segundo sexo, idade e região. Foram calculadas taxas padronizadas por idade para dados brutos e corrigidos. Realizou-se análise da tendência temporal da mortalidade por câncer de pulmão por meio do modelo de regressão com erros autorregressivos. O câncer de pulmão no Brasil apresentou taxas mais elevadas em homens que em mulheres e a região Sul foi a que apresentou maior risco de morte em 1996 e 2011. A mortalidade tendeu a reduzir para o sexo masculino e a aumentar para o sexo feminino. O câncer de pulmão no Brasil apresenta padrão de distribuição diferente segundo sexo, com taxas mais elevadas em homens e com redução da tendência de mortalidade para o sexo masculino e aumento das taxas para o sexo feminino.

Biochemical, molecular, and phylogenetic analysis of pyruvate carboxylase in the yellow fever mosquito, Aedes aegypti.

PubMed

Tu, Z; Hagedorn, H H

1997-02-01

Pyruvate carboxylase (PC, pyruvate: carbon dioxide ligase [ADP-forming], EC 6.4.1.1) was purified from the yellow fever mosquito, Aedes aegypti. The purified PC showed two polypeptides of similar M(r) (133 and 128 k). The N-terminal sequences of both polypeptides were shown to be very similar, if not identical. A polyclonal antiserum against the 133 kDa polypeptide cross-reacted strongly with the 128 kDa polypeptide. PC was found in all tissues examined. Using a semi-quantitative Western blot assay, PC was shown to be concentrated in the indirect flight muscles and fat body preparations. The ratios of the 133 to 128 kDa polypeptides were shown to differ in various tissues and an Aedes albopictus cell line. The indirect flight muscle was the only tissue in which the 128 kDa polypeptide was more abundant, while both the midgut and the cell line showed almost exclusively the 133 kDa polypeptide. Both peptides were present in varying amounts in brain, malpighian tubule, ovary and fat body preparation. The two isoforms of PC could play different roles in the flight muscle and other tissues. Clones covering a complete cDNA of PC of A. aegypti were obtained using a directional approach. The 3952 bp nucleotide sequence, including a 3585 bp coding region, was determined from these cDNA clones. The deduced 1195 amino acid sequence has a calculated M(r) of 132,200. A putative mitochondrial targeting sequence was determined by comparing the deduced amino acid sequence to the N-terminal sequences of the mature protein. The presence of a mitochondrial targeting sequence indicates that the mosquito PC encoded by the cloned cDNA may be localized in the mitochondria. After the targeting sequence, three functional domains were identified in the following order; biotin carboxylase (BC), carboxyltransferase (CT) and biotin carboxyl carrier protein (BCCP). The mosquito PC showed very high similarity to PCs from other sources (55.1-75.2% identity). Genomic Southern analysis indicated that there could be two similar PC genes or a single PC gene with allelic polymorphism in the A. aegypti genome. The evolutionary relationship of PCs among different organisms was consistent with the accepted evolutionary relationship of their host organisms. The evolution of the domain structures of the biotin-dependent carboxylases including PC was also investigated. This analysis indicates that biotin-dependent carboxylases evolved from a common origin. The analysis also provides evidence for early gene duplication events that shaped the family of biotin-dependent carboxylases. Clear evidence for the coevolution of BC and BCCP domains is presented, although they are associated with very different CT domains and the relative position of the three functional domains varies between members of the biotin-dependent carboxylases.

Molecular modeling and cytotoxicity of diffractaic acid: HP-β-CD inclusion complex encapsulated in microspheres.

PubMed

Silva, Camilla V N S; Barbosa, Jéssica A P; Ferraz, Milena S; Silva, Nicácio H; Honda, Neli K; Rabello, Marcelo M; Hernandes, Marcelo Z; Bezerra, Beatriz P; Cavalcanti, Isabella M F; Ayala, Alejandro P; Santos, Noemia P S; Santos-Magalhães, Nereide S

2016-11-01

In this pioneer study, 2-hydroxypropyl-β-cyclodextrin (HP-β-CD) was used to improve the solubility of the diffractaic acid (DA) via inclusion complex (DA:HP-β-CD). Subsequently, DA:HP-β-CD was incorporated into poly-ε-caprolactone (PCL) microspheres (DA:HP-β-CD-MS). Microspheres containing DA (DA-MS) or DA:HP-β-CD (DA:HP-β-CD-MS) were prepared using the multiple W/O/W emulsion-solvent evaporation technique. The phase-solubility diagram of DA in HP-β-CD (10-50mM) showed an A L type curve with a stability constant K 1:1 =821M -1 . 1 H NMR, FTIR, X-ray diffraction and thermal analysis showed changes in the molecular environment of DA in DA:HP-β-CD. The molecular modeling approach suggests a guest-host complex formation between the carboxylic moiety of both DA and the host (HP-β-CD). The mean particle size of the microspheres were ∅ DA-MS =5.23±1.65μm and ∅ DA:HP-β-CD-MS =4.11±1.39μm, respectively. The zeta potential values of the microspheres were ζ DA-MS =-7.85±0.32mV and ζ DA:HP-β-CD-MS =-6.93±0.46mV. Moreover, the encapsulation of DA:HP-β-CD into microspheres resulted in a more slower release (k 2 =0.042±0.001; r 2 =0.996) when compared with DA-MS (k 2 =0.183±0.005; r 2 =0.996). The encapsulation of DA or DA:HP-β-CD into microspheres reduced the cytotoxicity of DA (IC 50 =43.29μM) against Vero cells (IC 50 of DA-MS=108.48μM and IC 50 of DA:HP-β-CD-MS=142.63μM). Copyright © 2016 Elsevier B.V. All rights reserved.

Methamphetamine-induced neurotoxicity disrupts pharmacologically evoked dopamine transients in the dorsomedial and dorsolateral striatum.

PubMed

Robinson, John D; Howard, Christopher D; Pastuzyn, Elissa D; Byers, Diane L; Keefe, Kristen A; Garris, Paul A

2014-08-01

Phasic dopamine (DA) signaling, during which burst firing by DA neurons generates short-lived elevations in extracellular DA in terminal fields called DA transients, is implicated in reinforcement learning. Disrupted phasic DA signaling is proposed to link DA depletions and cognitive-behavioral impairment in methamphetamine (METH)-induced neurotoxicity. Here, we further investigated this disruption by assessing effects of METH pretreatment on DA transients elicited by a drug cocktail of raclopride, a D2 DA receptor antagonist, and nomifensine, an inhibitor of the dopamine transporter (DAT). One advantage of this approach is that pharmacological activation provides a large, high-quality data set of transients elicited by endogenous burst firing of DA neurons for analysis of regional differences and neurotoxicity. These pharmacologically evoked DA transients were measured in the dorsomedial (DM) and dorsolateral (DL) striatum of urethane-anesthetized rats by fast-scan cyclic voltammetry. Electrically evoked DA levels were also recorded to quantify DA release and uptake, and DAT binding was determined by means of autoradiography to index DA denervation. Pharmacologically evoked DA transients in intact animals exhibited a greater amplitude and frequency and shorter duration in the DM compared to the DL striatum, despite similar pre- and post-drug assessments of DA release and uptake in both sub-regions as determined from the electrically evoked DA signals. METH pretreatment reduced transient activity. The most prominent effect of METH pretreatment on transients across striatal sub-region was decreased amplitude, which mirrored decreased DAT binding and was accompanied by decreased DA release. Overall, these results identify marked intrastriatal differences in the activity of DA transients that appear independent of presynaptic mechanisms for DA release and uptake and further support disrupted phasic DA signaling mediated by decreased DA release in rats with METH-induced neurotoxicity.

Striatal dopamine neurotransmission: regulation of release and uptake

PubMed Central

Sulzer, David; Cragg, Stephanie J.; Rice, Margaret E.

2016-01-01

Dopamine (DA) transmission is governed by processes that regulate release from axonal boutons in the forebrain and the somatodendritic compartment in midbrain, and by clearance by the DA transporter, diffusion, and extracellular metabolism. We review how axonal DA release is regulated by neuronal activity and by autoreceptors and heteroreceptors, and address how quantal release events are regulated in size and frequency. In brain regions densely innervated by DA axons, DA clearance is due predominantly to uptake by the DA transporter, whereas in cortex, midbrain, and other regions with relatively sparse DA inputs, the norepinephrine transporter and diffusion are involved. We discuss the role of DA uptake in restricting the sphere of influence of DA and in temporal accumulation of extracellular DA levels upon successive action potentials. The tonic discharge activity of DA neurons may be translated into a tonic extracellular DA level, whereas their bursting activity can generate discrete extracellular DA transients. PMID:27141430

75 FR 52292 - Airworthiness Directives; Diamond Aircraft Industries GmbH Models DA 40 and DA 40F Airplanes

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-25

... Industries GmbH Models DA 40 and DA 40F Airplanes AGENCY: Federal Aviation Administration (FAA), Department... new airworthiness directive (AD) for all Diamond Aircraft Industries GmbH Models DA 40 and DA 40F... received information from Diamond Aircraft Industries GmbH that the Models DA 40 and DA 40F airplanes have...

77 FR 54800 - Airworthiness Directives; Diamond Aircraft Industries GmbH Airplanes

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-06

... airworthiness directive (AD) for certain Diamond Aircraft Industries GmbH Models DA 42, DA 42 NG, and DA 42 M-NG... products. The MCAI states: During conversion of a DA 42 to a DA 42 NG, voids were detected in the adhesive... the following Diamond Aircraft Industries GmbH Models DA 42, DA 42 NG, and DA 42 M-NG airplanes...

METHAMPHETAMINE-INDUCED NEUROTOXICITY DISRUPTS PHARMACOLOGICALLY EVOKED DOPAMINE TRANSIENTS IN THE DORSOMEDIAL AND DORSOLATERAL STRIATUM

PubMed Central

Robinson, John D.; Howard, Christopher D.; Pastuzyn, Elissa D.; Byers, Diane L.; Keefe, Kristen A.; Garris, Paul A.

2014-01-01

Phasic dopamine (DA) signaling, during which burst firing by dopamine neurons generates short-lived elevations in extracellular DA in terminal fields called DA transients, is implicated in reinforcement learning. Disrupted phasic DA signaling is proposed to link DA depletions and cognitive-behavioral impairment in methamphetamine (METH)-induced neurotoxicity. Here we further investigated this disruption by assessing effects of METH pretreatment on DA transients elicited by a drug cocktail of raclopride, a D2 DA receptor antagonist, and nomifensine, an inhibitor of the dopamine transporter (DAT). One advantage of this approach is that pharmacological activation provides a large, high-quality data set of transients elicited by endogenous burst firing of DA neurons for analysis of regional differences and neurotoxicity. These pharmacologically evoked DA transients were measured in the dorsomedial (DM) and dorsolateral (DL) striatum of urethane-anesthetized rats by fast-scan cyclic voltammetry. Electrically evoked DA levels were also recorded to quantify DA release and uptake, and DAT binding was determined by autoradiography to index DA denervation. Pharmacologically evoked DA transients in intact animals exhibited a greater amplitude and frequency and shorter duration in the DM compared to the DL striatum, despite similar pre- and post-drug assessments of DA release and uptake in both sub-regions as determined from the electrically evoked DA signals. METH pretreatment reduced transient activity. The most prominent effect of METH pretreatment on transients across striatal sub-region was decreased amplitude, which mirrored decreased DAT binding and was accompanied by decreased DA release. Overall, these results identify marked intrastriatal differences in the activity of DA transients that appear independent of presynaptic mechanisms for DA release and uptake and further support disrupted phasic DA signaling mediated by decreased DA release in rats with METH-induced neurotoxicity. PMID:24562969

Analysis of protein profiles in diabetic rat blood plasma that induced by alloxan

NASA Astrophysics Data System (ADS)

Hidayati, Dewi; Abdulgani, Nurlita; Setiyawan, Hengki; Trisnawati, Indah; Ashuri, Nova Maulidina; Sa'adah, Noor Nailis

2017-06-01

Proteomics is the study to identify the proteins involved in physiological metabolic pathway. The protein profiles of blood plasma from alloxan-induced diabetic rats has investigated using Sodium Dodecyl Sulphate Polyacrylamide Gel Electrophoresis (SDS-PAGE). Data were analyzed descriptively based on variations of the type and intensity of the protein. There were identified the similarity of protein variant between diabetic and control rats included ankyrin (200kDa), IgG (150kDa), nephrin (136 kDa), IDE (112 kDA), albumin (66 kDa), prealbumin (55 kDA), CICP (43 kDa), ApoA-V (39 kDa), GAPDH (35 kDa), C-RP (27,1 kDa), leptin (16 kDa) and apelin (13 kDa). However, the apelin profile at diabetic rats shows the higher intensity than control.

Analysis of the mechanisms by which amphetamine releases dopamine from striatal dopaminergic neurons

DOE Office of Scientific and Technical Information (OSTI.GOV)

Parker, E.M.

1987-01-01

The goals of the studies were (1) to determine the intraneuronal transmitter pools that contribute to the efflux of dopamine (DA) elicited by amphetamine (AMPH) and (2) to determine the biochemical mechanism by which AMPH increases DA efflux from dopaminergic neurons. AMPH increased the efflux of endogenous DA and decreased the electrically-evoked overflow of (/sup 3/H) acetylcholine (ACh) from superfused rabbit striatal slices. These effects were most pronounced when both vesicular DA stores and DA synthesis were intact. Therefore, extravesicular, newly synthesized DA and vesicular stores of DA contribute to AMPH-induced DA efflux. Simultaneous inhibition of monoamine oxidase (MAO) andmore » neuronal DA uptake did not increase the efflux of endogenous DA or inhibit the electrically-evoked overflow of (/sup 3/H)ACh to the same extent as AMPH. Hence, inhibition of MAO and neuronal DA uptake are probably not the major mechanisms by which AMPH increases DA efflux. The AMPH-induced efflux of endogenous or (/sup 3/H)DA was blocked by inhibitors of neuronal DA uptake.« less

The major histocompatibility complex genes impact pain response in DA and DA.1U rats.

PubMed

Guo, Yuan; Yao, Fan-Rong; Cao, Dong-Yuan; Li, Li; Wang, Hui-Sheng; Xie, Wen; Zhao, Yan

2015-08-01

Our recent studies have shown that the difference in basal pain sensitivity to mechanical and thermal stimulation between Dark-Agouti (DA) rats and a novel congenic DA.1U rats is major histocompatibility complex (MHC) genes dependent. In the present study, we further used DA and DA.1U rats to investigate the role of MHC genes in formalin-induced pain model by behavioral, electrophysiological and immunohistochemical methods. Behavioral results showed biphasic nociceptive behaviors increased significantly following the intraplantar injection of formalin in the hindpaw of DA and DA.1U rats. The main nociceptive behaviors were lifting and licking, especially in DA rats (P<0.001 and P<0.01). The composite pain scores (CPS) in DA rats were significantly higher than those in DA.1U rats in both phases of the formalin test (P<0.01). Electrophysiological results also showed the biphasic increase in discharge rates of C and Aδ fibers of L5 dorsal root in the two strains, and the net change of the discharge rate of DA rats was significantly higher than that of DA.1U rats (P<0.05). The mechanical thresholds decreased after formalin injection in both strains (P<0.01), and the net change in the mechanical threshold in DA was greater than that in DA.1U rats (P<0.05). The expression of RT1-B, representation of MHC class II molecule, in laminae I-II of L4/5 spinal cord in DA rats was significantly higher than that in DA.1U rats in the respective experimental group (P<0.05). These results suggested that both DA and DA.1U rats exhibited nociceptive responses in formalin-induced pain model and DA rats were more sensitive to noxious chemical stimulus than DA.1U rats, indicating that MHC genes might contribute to the difference in pain sensitivity. Copyright © 2015 Elsevier Inc. All rights reserved.

The local effect of octreotide on mechanical pain sensitivity is more sensitive in DA rats than DA.1U rats.

PubMed

Yao, Fan-Rong; Wang, Hui-Sheng; Guo, Yuan; Zhao, Yan

2016-02-01

A recent study by the authors indicated that major histocompatibility complex (MHC) genes are associated with the differences in basal pain sensitivity and in formalin model between Dark-Agouti (DA) and novel congenic DA.1U rats, which have the same genetic background as DA rats except for the u alleles of MHC. The objective of the present study is to investigate whether there is a difference in the pristane-induced arthritis (PIA) model and local analgesic effect of octreotide (OCT) between DA and DA.1U rats. The hindpaw mechanical withdrawal threshold (MWT) and heat withdrawal latency (HWL) were observed. The C unit firings of the tibial nerve evoked by non-noxious and noxious toe movements were recorded by electrophysiological methods in normal and PIA models in DA and DA.1U rats before and after local OCT administration. The expression of somatostatin receptor 2A (SSTR2A) was observed by immunohistochemistry. The results demonstrate that DA rats have a higher mechanical sensitivity than DA.1U rats after PIA. Local OCT administration significantly elevated MWT in DA rats under normal and PIA sate, but not in DA.1U rats. The electrophysiological experiments showed OCT significantly attenuated the firings of C units evoked by non-noxious and noxious stimulation in DA rats more than those in DA.1U rats both in normal and PIA states. In addition, the expression of SSTR2A in the dorsal horn of the spinal cord was significantly higher in DA than in DA.1U rats. All of the findings suggest a higher local analgesic effect of OCT in DA rats than DA.1U rats, which might be associated with the MHC genes. © 2016 John Wiley & Sons Australia, Ltd.

METHAMPHETAMINE-INDUCED NEUROTOXICITY DISRUPTS NATURALLY OCCURRING PHASIC DOPAMINE SIGNALING

PubMed Central

Howard, Christopher D.; Daberkow, David P.; Ramsson, Eric S.; Keefe, Kristen A.; Garris, Paul A.

2013-01-01

Methamphetamine (METH) is a highly addictive drug that is also neurotoxic to central dopamine (DA) systems. Although striatal DA depletions induced by METH are associated with behavioral and cognitive impairments, the link between these phenomena remains poorly understood. Previous work in both METH-pretreated animals and the 6-hydroxydopamine model of Parkinson’s disease suggests that a disruption of phasic DA signaling, which is important for learning and goal-directed behavior, may be such a link. However, prior studies used electrical stimulation to elicit phasic-like DA responses and were also performed under anesthesia, which alters DA neuron activity and presynaptic function. Here we investigated the consequences of METH-induced DA terminal loss on both electrically evoked phasic-like DA signals and so-called “spontaneous” phasic DA transients measured by voltammetry in awake rats. Not ostensibly attributable to discrete stimuli, these sub-second DA changes may play a role in enhancing reward-cue associations. METH-pretreatment reduced tissue DA content in the dorsomedial striatum and nucleus accumbens by ~55%. Analysis of phasic-like DA responses elicited by reinforcing stimulation revealed that METH pretreatment decreased their amplitude and underlying mechanisms for release and uptake to a similar degree as DA content in both striatal subregions. Most importantly, characteristics of DA transients were altered by METH-induced DA terminal loss, with amplitude and frequency decreased and duration increased. These results demonstrate for the first time that denervation of DA neurons alters naturally occurring DA transients and are consistent with diminished phasic DA signaling as a plausible mechanism linking METH-induced striatal DA depletions and cognitive deficits. PMID:23574406

Cloning and analysis of a cDNA encoding an endo-polygalacturonase expressed during the desiccation period of the silique-valves of turnip-tops (Brassica rapa L. cv. Rapa).

PubMed

Rodríguez-Gacio, María del Carmen; Nicolás, Carlos; Matilla, Angel J

2004-02-01

During zygotic embryogenesis of turnip-tops (Brassica rapa L. cv. Rapa), the polygalacturonase activity (PG; EC 3.2.1.15), measured as a decrease in viscosity of polygalacturonic acid, reached a high when the desiccation process in the seeded silique was triggered and the valves had lost more than 70-75% of their moisture (45-50 DPA). The PG activity was not detected in any phases of developing seeds. This work also characterizes a cDNA with an open reading frame of 1303 bp and that codes for a putative PG called BrPG1. This falls into the category of clade-B, which includes PG related to shattering and abscission processes. The deduced BrPG1 sequence predicted a 434-residue-long precursor protein (46.7kDa) with a transit peptide sequence 23 amino acids long. A molecular mass of 44.3 kDa was calculated for the mature form of BrPG1, which showed high sequence similarity to PGA1 (97%) of B. napus (X98373) and ADPG1 (87%) of Arabidopsis thaliana (AJ002532). All conserved amino acids at the catalytic site of PGs belonging to clade-B were preserved on BrPG1. This BrPG1 gene was specifically expressed in the silique valves of turnip-tops and was temporally expressed at the beginning of its desiccation.