Probing the Evolution of the Galaxy Interaction/Merger Rate Using Distant Collisional Ring Galaxies

NASA Astrophysics Data System (ADS)

Lavery, Russell J.; Remijan, Anthony J.

We present the initial results from our long-term program of identifying distant collisional ring galaxies (CRGS) in deep HST WFPC-2 images. The unique morphological characteristics of these galaxies make them easily identifiable out to a redshift of z = 1. To date, we have visually scanned 100 WFPC-2 fields and identified 14 excellent collisional ring galaxy (CRG) candidates. Based on estimated redshifts, these 14 galaxies are expected to lie in the redshift interval of 0.1 to 1. We have used this sample of CRGs to estimate the evolution of the galaxy interaction/merger rate with redshift. To account for the number of CRGs we have identified in these fields, the galaxy interaction/merger rate, parameterized as (1 + z)m, must increase steeply with redshift, with m = 5.7 +/- 1.5. We can rule out a non-evolving galaxy merger rate (m = 0) at greater than the 3σ level. We compare our results with other programs to determine the value of m using the evolution of galaxy pairs.

Coupling dynamical and collisional evolution of small bodies:. an application to the early ejection of planetesimals from the Jupiter-Saturn region

NASA Astrophysics Data System (ADS)

Charnoz, Sébastien; Morbidelli, Alessandro

2003-11-01

We present a new algorithm designed to compute the collisional erosion of a population of small bodies undergoing a complex and rapid dynamical evolution induced by strong gravitational perturbations. Usual particle-in-a-box models have been extensively and successfully used to study the evolution of asteroids or KBOs. However, they cannot track the evolution of small bodies in rapid dynamical evolution, due to their oversimplified description of the dynamics. Our code is based on both (1) a direct simulation of the dynamical evolution which is used to compute local encounter rates and (2) a classical fragmentation model. Such a code may be used to track the erosional evolution of the planetesimal disk under the action of newly formed giant-planets, a passing star or a population of massive planetary-embryos. We present here an application to a problem related to the formation of the Oort cloud. The usually accepted formation scenario is that planetesimals, originally formed in the giant planet region, have been transported to the Oort cloud by gravitational scattering. However, it has been suggested that, during the initial transport phase, the mutual large encounter velocities might have induced a rapid and intense collisional evolution of the planetesimal population, potentially causing a significant reduction of the Oort cloud formation process. This mechanism is explored with our new algorithm. Because the advantages of our new approach are better highlighted for a population undergoing a violent dynamical evolution, we concentrate in this paper on the planetesimals originally in the Jupiter-Saturn region, although it is known that they are only minor contributors to the final Oort cloud population. A wide range of parameters is explored (mass of the particle disk, initial size-distribution, material strength): depending upon the assumed parameter values, we find that from 15 to 90% of the mass contained in bodies larger than 1 km survives the collisional process; for our preferred choice of the parameters this fraction is ˜70%. It is also found that the majority of planetesimals larger than 1-10 km are pristine, and not fragments. We show also that collisional damping may not prevent planetesimals from being ejected to the outer Solar System. Thus, although the collisional activity is high during the scattering by Jupiter and Saturn, collisional grinding does not lower by orders of magnitude the mass contained in bodies larger than 1 km, originally in the Jupiter-Saturn region. These conclusions seem to support the classical collisionless scenario of Oort cloud formation, at least for the Jupiter-Saturn region.

The Fossilized Size Distribution of the Main Asteroid Belt

NASA Astrophysics Data System (ADS)

Bottke, W. F.; Durda, D.; Nesvorny, D.; Jedicke, R.; Morbidelli, A.

2004-05-01

The main asteroid belt evolved into its current state via two processes: dynamical depletion and collisional evolution. During the planet formation epoch, the primordial main belt (PMB) contained several Earth masses of material, enough to allow the asteroids to accrete on relatively short timescales (e.g., Weidenschilling 1977). The present-day main belt, however, only contains 5e-4 Earth masses of material (Petit et al. 2002). To explain this mass loss, we suggest the PMB evolved in the following manner: Planetesimals and planetary embryos accreted (and differentiated) in the PMB during the first few Myr of the solar system. Gravitational perturbations from these embryos dynamically stirred the main belt, enough to initiate fragmentation. When Jupiter reached its full size, some 10 Myr after the solar system's birth, its perturbations, together with those of the embryos, dynamically depleted the main belt region of > 99% of its bodies. Much of this material was sent to high (e,i) orbits, where it continued to pummel the surviving main belt bodies at high impact velocities for more than 100 Myr. While some differentiated bodies in the PMB were disrupted, most were instead scattered; only small fragments from this population remain. This period of comminution and dynamical evolution in the PMB created, among other things, the main belt's wavy size-frequency distribution, such that it can be considered a "fossil" from this violent early epoch. From this time forward, however, relatively little collisional evolution has taken place in the main belt, consistent with the surprising paucity of prominent asteroid families. We will show that the constraints provided by asteroid families and the shape of the main belt size distribution are essential to obtaining a unique solution from our model's initial conditions. We also use our model results to solve for the asteroid disruption scaling law Q*D, a critical function needed in all planet formation codes that include fragmentation between rocky planetesimals.

VIII Workshop on Catastrophic Disruption in the Solar System

NASA Astrophysics Data System (ADS)

Michel, Patrick; Nakamura, Akiko M.; Bagatin, Adriano Campo

2015-03-01

The Catastrophic Disruption (CD) Workshops have become a tradition for the various communities interested in collisional processes. The first one was organized in 1985 by the missed Prof. Paolo Farinella from the University of Pisa and his colleague Paolo Paolicchi, who understood the fundamental importance of collisional processes in the history of the Solar System. It was followed by subsequent workshops in Belgrade (Serbia, 1987), Kyoto (Japan, 1990), Gubbio (Italy, 1993), the Timberline Lodge (Oregon, USA, 1998), Cannes (France, 2003) and Alicante (Spain, 2007). The CD workshops are typically separated by 3-6 years, accounting for the required amount of time to perform subsequent advances in the field motivating the interest of the relevant scientific community for getting together to discuss new results and evolving directions in the field.

Interrelated structures of the transport shock and collisional relaxation layer in a multitemperature, multilevel ionized gas

NASA Technical Reports Server (NTRS)

Vinolo, A. R.; Clarke, J. H.

1973-01-01

The gas dynamic structures of the transport shock and the downstream collisional relaxation layer are evaluated for partially ionized monatomic gases. Elastic and inelastic collisional nonequilibrium effects are taken into consideration. In the microscopic model of the atom, three electronic levels are accounted for. By using an asymptotic technique, the shock morphology is found on a continuum flow basis. This procedure gives two distinct layers in which the nonequilibrium effects to be considered are different. A transport shock appears as the inner solution to an outer collisional relaxation layer. The results show four main interesting points: (1) on structuring the transport shock, ionization and excitation rates must be included in the formulation, since the flow is not frozen with respect to the population of the different electronic levels; (2) an electron temperature precursor appears at the beginning of the transport shock; (3) the collisional layer is rationally reduced to quadrature for special initial conditions, which (4) are obtained from new Rankine-Hugoniot relations for the inner shock.

Population decay time and distribution of exciton states analyzed by rate equations based on theoretical phononic and electron-collisional rate coefficients

NASA Astrophysics Data System (ADS)

Oki, Kensuke; Ma, Bei; Ishitani, Yoshihiro

2017-11-01

Population distributions and transition fluxes of the A exciton in bulk GaN are theoretically analyzed using rate equations of states of the principal quantum number n up to 5 and the continuum. These rate equations consist of the terms of radiative, electron-collisional, and phononic processes. The dependence of the rate coefficients on temperature is revealed on the basis of the collisional-radiative model of hydrogen plasma for the electron-collisional processes and theoretical formulation using Fermi's "golden rule" for the phononic processes. The respective effects of the variations in electron, exciton, and lattice temperatures are exhibited. This analysis is a base of the discussion on nonthermal equilibrium states of carrier-exciton-phonon dynamics. It is found that the exciton dissociation is enhanced even below 150 K mainly by the increase in the lattice temperature. When the thermal-equilibrium temperature increases, the population fluxes between the states of n >1 and the continuum become more dominant. Below 20 K, the severe deviation from the Saha-Boltzmann distribution occurs owing to the interband excitation flux being higher than the excitation flux from the 1 S state. The population decay time of the 1 S state at 300 K is more than ten times longer than the recombination lifetime of excitons with kinetic energy but without the upper levels (n >1 and the continuum). This phenomenon is caused by a shift of population distribution to the upper levels. This phonon-exciton-radiation model gives insights into the limitations of conventional analyses such as the ABC model, the Arrhenius plot, the two-level model (n =1 and the continuum), and the neglect of the upper levels.

A Circum-terrestrial Compositional Filter

NASA Technical Reports Server (NTRS)

Chapman, C. R.; Greenberg, R.

1985-01-01

A major question about the moon is its under abundance of iron. It is the purpose of this research to understand whether a metal-silicate fractionation of heliocentrically orbiting bodies can be achieved through collisional interactions with a circum-terrestrial swarm. Rates of diffusion are investigated and the mutual collisional destruction within the population is examined. The interactions of these differentiated planetesimals and their collisional products (both silicate mantle fragments and iron cores) with a swarm of Earth orbiting lunesimals (perhaps ejecta from the Earth) of km scale, totaling a mass of order 0.1 lunar mass, extending out 10 or 20 Earth radii are considered. It is found that such a small near Earth population of lunesimals can filter out silicate rich material, while passing iron cores, and form a moon composed partly of terrestrial material, but more substantially of the captured silicate rich portions of the planetesimals.

Leucogranites of the Teton Range, Wyoming: A record of Archean collisional orogeny

NASA Astrophysics Data System (ADS)

Frost, Carol D.; Swapp, Susan M.; Frost, B. Ronald; Finley-Blasi, Lee; Fitz-Gerald, D. Braden

2016-07-01

Leucogranitic rocks formed by crustal melting are a prominent feature of collisional orogens of all ages. This study describes leucogranitic gneisses associated with an Archean collisional orogeny preserved in the Teton Range of northwestern Wyoming, USA. These leucogneisses formed at 2.68 Ga, and initial Nd isotopic compositions suggest they are derived from relatively juvenile sources. Two distinct groups of leucogneisses, both trondhjemitic, are identified on the basis of field relations, petrology, and geochemistry. The Webb Canyon gneiss forms large, sheet-like bodies of hornblende biotite trondhjemite and granodiorite. This gneiss is silica-rich (SiO2 = 70-80%), strongly ferroan, comparatively low in alumina, and is characterized by high Zr and Y, low Sr, and high REE contents that define ;seagull;-shaped REE patterns. The Bitch Creek gneiss forms small sills, dikes, and plutons of biotite trondhjemite. Silica, Zr, Y, and REE are lower and alumina and Sr are higher than in the Webb Canyon gneiss. These differences reflect different melting conditions: the Webb Canyon gneiss formed by dehydration melting in which amphibole and quartz breaks down, accounting for the low alumina, high FeO, high silica content and observed trace element characteristics. The Bitch Creek gneiss formed by H2O-excess melting in which plagioclase breaks down leaving an amphibole-rich restite, producing magmas higher in alumina and Sr and lower in FeO and HREE. Both melt mechanisms are expected in collisional environments: dehydration melting accompanies gravitational collapse and tectonic extension of dramatically thickened crust, and water-excess melting may occur when collision places a relatively cool, hydrous lower plate beneath a hotter upper plate. The Archean leucogranitic gneisses of the Teton Range are calcic trondhjemites and granodiorites whereas younger collisional leucogranites typically are true granites. The difference in leucogranite composition reflects the geochemically immature Archean crust that partially melted in the Teton Range compared to the more geochemically evolved rocks typically involved in younger collisional orogens.

Interrelated structures of the transport shock and collisional relaxation layer in a multitemperature, multilevel ionized gas

NASA Technical Reports Server (NTRS)

Vinolo, A. R.; Clarke, J. H.

1972-01-01

The gas dynamic structures of the transport shock and the downstream collisional relaxation layer are evaluated for partially ionized monatomic gases. Elastic and inelastic collisional nonequilibrium effects are taken into consideration. Three electronic levels are accounted for in the microscopic model of the atom. Nonequilibrium processes with respect to population of levels and species plus temperature are considered. By using an asymptotic technique the shock morphology is found on a continuum flow basis. The asymptotic procedure gives two distinct layers in which the nonequilibrium effects to be considered are different. A transport shock appears as the inner solution to an outer collisional relaxation layer in which the gas reaches local equilibrium. A family of numerical examples is displayed for different flow regimes. Argon and helium models are used in these examples.

Effects of ionization and ion loss on dust ion-acoustic solitary waves in a collisional dusty plasma with suprathermal electrons

NASA Astrophysics Data System (ADS)

Mayout, Saliha; Gougam, Leila Ait; Tribeche, Mouloud

2016-03-01

The combined effects of ionization, ion loss, and electron suprathermality on dust ion-acoustic solitary waves in a collisional dusty plasma are examined. Carrying out a small but finite amplitude analysis, a damped Korteweg-de Vries (dK-dV) equation is derived. The damping term decreases with the increase of the spectral index and saturates for Maxwellian electrons. Choosing typical plasma parameters, the analytical approximate solution of the dK-dV equation is numerically analyzed. We first neglect the ionization and ion loss effects and account only for collisions to estimate the relative importance between these damping terms which can act concurrently. Interestingly, we found that as the suprathermal character of the electrons becomes important, the strength of the collisions related dissipation becomes more important and causes the dust ion-acoustic solitary wave amplitude to decay more rapidly. Moreover, the collisional damping may largely prevail over the ionization and ion loss related damping. The latter becomes more effective as the electrons evolve far away from their thermal equilibrium. Our results complement and provide new insights into previously published work on this problem.

Effects of ionization and ion loss on dust ion- acoustic solitary waves in a collisional dusty plasma with suprathermal electrons

NASA Astrophysics Data System (ADS)

Tribeche, Mouloud; Mayout, Saliha

2016-07-01

The combined effects of ionization, ion loss and electron suprathermality on dust ion- acoustic solitary waves in a collisional dusty plasma are examined. Carrying out a small but finite amplitude analysis, a damped Korteweg- de Vries (dK-- dV) equation is derived. The damping term decreases with the increase of the spectral index and saturates for Maxwellian electrons. Choosing typical plasma parameters, the analytical approximate solution of the dK- dV equation is numerically analyzed. We first neglect the ionization and ion loss effects and account only for collisions to estimate the relative importance between these damping terms which can act concurrently. Interestingly, we found that as the suprathermal character of the electrons becomes important, the strength of the collisions related dissipation becomes more important and causes the DIA solitary wave amplitude to decay more rapidly. Moreover, the collisional damping may largely prevail over the ionization and ion loss related damping. The latter becomes more effective as the electrons evolve far away from their thermal equilibrium. Our results complement and provide new insights into previously published work on this problem.

Highly Resolved Measurements of a Developing Strong Collisional Plasma Shock

NASA Astrophysics Data System (ADS)

Rinderknecht, Hans G.; Park, H.-S.; Ross, J. S.; Amendt, P. A.; Higginson, D. P.; Wilks, S. C.; Haberberger, D.; Katz, J.; Froula, D. H.; Hoffman, N. M.; Kagan, G.; Keenan, B. D.; Vold, E. L.

2018-03-01

The structure of a strong collisional shock front forming in a plasma is directly probed for the first time in laser-driven gas-jet experiments. Thomson scattering of a 526.5 nm probe beam was used to diagnose temperature and ion velocity distribution in a strong shock (M ˜11 ) propagating through a low-density (ρ ˜0.01 mg /cc ) plasma composed of hydrogen. A forward-streaming population of ions traveling in excess of the shock velocity was observed to heat and slow down on an unmoving, unshocked population of cold protons, until ultimately the populations merge and begin to thermalize. Instabilities are observed during the merging, indicating a uniquely plasma-phase process in shock front formation.

Depletion of the excited state population in negative ions using laser photodetachment in a gas filled RF quadrupole ion guide

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lindahl, A. O.; Hanstorp, D.; Forstner, Dr. Oliver

2010-01-01

The depopulation of excited states in beams of negatively charged carbon and silicon ions was demonstrated using collisional detachment and laser photodetachment in a radio-frequency quadrupole ion guide filled with helium. The high-lying, loosely bound {sup 2}D excited state in C{sup -} was completely depleted through collisional detachment alone, which was quantitatively determined within 6%. For Si{sup -} the combined signal from the population in the {sup 2}P and {sup 2}D excited states was only partly depleted through collisions in the cooler. The loosely bound {sup 2}P state was likely to be completely depopulated, and the more tightly bound {supmore » 2}D state was partly depopulated through collisions. 98(2)% of the remaining {sup 2}D population was removed by photodetachment in the cooler using less than 2 W laser power. The total reduction of the excited population in Si{sup -}, including collisional detachment and photodetachment, was estimated to be 99(1)%. Employing this novel technique to produce a pure ground state negative ion beam offers possibilities of enhancing selectivity, as well as accuracy, in high-precision experiments on atomic as well as molecular negative ions.« less

GEO Collisional Risk Assessment Based on Analysis of NASA-WISE Data and Modeling

DTIC Science & Technology

2015-10-18

GEO Collisional Risk Assessment Based on Analysis of NASA -WISE Data and Modeling Jeremy Murray Krezan1, Samantha Howard1, Phan D. Dao1, Derek...Surka2 1AFRL Space Vehicles Directorate,2Applied Technology Associates Incorporated From December 2009 through 2011 the NASA Wide-Field Infrared...of known debris. The NASA -WISE GEO belt debris population adds potentially thousands previously uncataloged objects. This paper describes

NLTE opacity calculations: C-Si and C-Ge mixtures

NASA Astrophysics Data System (ADS)

Jarrah, W.; Benredjem, D.; Pain, J.-C.; Dubau, J.

2017-09-01

The opacity is an important issue in the knowledge of the radiative properties of ICF and astrophysical plasmas. We present the opacity of dopants (silicon, germanium) embedded in the ablator of some ICF capsules. In recent works, Hill and Rose calculated the opacity of silicon in LTE and non-LTE plasmas, while Minguez and co-workers focused on the opacity of carbon. We have used the Cowan code to calculate the atomic structure of carbon, silicon and germanium in various ionic stages. The cross-sections of atomic processes (collisional excitation, collisional ionization) are obtained by fitting the values given by the code FAC to the Van Regemorter-like formulas of Sampson and Zhang. A corrected Gaunt factor is then obtained. A collisional-radiative code was developed in order to obtain the ionic populations, the level populations and the opacity. Line broadening and line shift are taken into account. The ionization potential depression is included in our calculations. The effect of a radiation field on the opacity is examined.

Highly Resolved Measurements of a Developing Strong Collisional Plasma Shock

DOE PAGES

Rinderknecht, Hans G.; Park, H. -S.; Ross, J. S.; ...

2018-03-02

In this paper, the structure of a strong collisional shock front forming in a plasma is directly probed for the first time in laser-driven gas-jet experiments. Thomson scattering of a 526.5 nm probe beam was used to diagnose temperature and ion velocity distribution in a strong shock (more » $$M{\\sim}11$$) propagating through a low-density ($${\\rho}{\\sim}0.01\\text{ }\\text{ }\\mathrm{mg}/\\mathrm{cc}$$) plasma composed of hydrogen. A forward-streaming population of ions traveling in excess of the shock velocity was observed to heat and slow down on an unmoving, unshocked population of cold protons, until ultimately the populations merge and begin to thermalize. Finally, instabilities are observed during the merging, indicating a uniquely plasma-phase process in shock front formation.« less

Highly Resolved Measurements of a Developing Strong Collisional Plasma Shock

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rinderknecht, Hans G.; Park, H. -S.; Ross, J. S.

In this paper, the structure of a strong collisional shock front forming in a plasma is directly probed for the first time in laser-driven gas-jet experiments. Thomson scattering of a 526.5 nm probe beam was used to diagnose temperature and ion velocity distribution in a strong shock (more » $$M{\\sim}11$$) propagating through a low-density ($${\\rho}{\\sim}0.01\\text{ }\\text{ }\\mathrm{mg}/\\mathrm{cc}$$) plasma composed of hydrogen. A forward-streaming population of ions traveling in excess of the shock velocity was observed to heat and slow down on an unmoving, unshocked population of cold protons, until ultimately the populations merge and begin to thermalize. Finally, instabilities are observed during the merging, indicating a uniquely plasma-phase process in shock front formation.« less

Comparison of continuous and discontinuous collisional bumpers: Dimensionally scaled impact experiments into single wire meshes

NASA Technical Reports Server (NTRS)

Hoerz, Friedrich; Cintala, Mark; See, Thomas; Bernhard, Ronald; Cardenas, Frank; Davidson, William; Haynes, Jerry

1992-01-01

An experimental inquiry into the utility of discontinuous bumpers was conducted to investigate the collisional outcomes of impacts into single grid-like targets and to compare the results with more traditional bumper designs that employ continuous sheet stock. We performed some 35 experiments using 6.3 and 3.2 mm diameter spherical soda-lime glass projectiles at low velocities (less than 2.5 km/s) and 13 at velocities between 5 and 6 km/s, using 3.2 mm spheres only. The thrust of the experiments related to the characterization of collisional fragments as a function of target thickness or areal shield mass of both bumper designs. The primary product of these experiments was witness plates that record the resulting population of collisional fragments. Substantial interpretive and predictive insights into bumper performance were obtained. All qualitative observations (on the witness plates) and detailed measurements of displaced masses seem simply and consistently related only to bumper mass available for interaction with the impactor. This renders the grid bumper into the superior shield design. These findings present evidence that discontinuous bumpers are a viable concept for collisional shields, possibly superior to continuous geometries.

An Efficient Statistical Method to Compute Molecular Collisional Rate Coefficients

NASA Astrophysics Data System (ADS)

Loreau, Jérôme; Lique, François; Faure, Alexandre

2018-01-01

Our knowledge about the “cold” universe often relies on molecular spectra. A general property of such spectra is that the energy level populations are rarely at local thermodynamic equilibrium. Solving the radiative transfer thus requires the availability of collisional rate coefficients with the main colliding partners over the temperature range ∼10–1000 K. These rate coefficients are notoriously difficult to measure and expensive to compute. In particular, very few reliable collisional data exist for inelastic collisions involving reactive radicals or ions. In this Letter, we explore the use of a fast quantum statistical method to determine molecular collisional excitation rate coefficients. The method is benchmarked against accurate (but costly) rigid-rotor close-coupling calculations. For collisions proceeding through the formation of a strongly bound complex, the method is found to be highly satisfactory up to room temperature. Its accuracy decreases with decreasing potential well depth and with increasing temperature, as expected. This new method opens the way to the determination of accurate inelastic collisional data involving key reactive species such as {{{H}}}3+, H2O+, and H3O+ for which exact quantum calculations are currently not feasible.

Polarization of Sunyaev-Zel'dovich signal due to electron pressure anisotropy in galaxy clusters

NASA Astrophysics Data System (ADS)

Khabibullin, I.; Komarov, S.; Churazov, E.; Schekochihin, A.

2018-02-01

We describe polarization of the Sunyaev-Zel'dovich (SZ) effect associated with electron pressure anisotropy likely present in the intracluster medium (ICM). The ICM is an astrophysical example of a weakly collisional plasma where the Larmor frequencies of charged particles greatly exceed their collision frequencies. This permits formation of pressure anisotropies, driven by evolving magnetic fields via adiabatic invariance, or by heat fluxes. SZ polarization arises in the process of Compton scattering of the cosmic microwave background (CMB) photons off the thermal ICM electrons due to the difference in the characteristic thermal velocities of the electrons along two mutually orthogonal directions in the sky plane. The signal scales linearly with the optical depth of the region containing large-scale correlated anisotropy, and with the degree of anisotropy itself. It has the same spectral dependence as the polarization induced by cluster motion with respect to the CMB frame (kinematic SZ effect polarization), but can be distinguished by its spatial pattern. For the illustrative case of a galaxy cluster with a cold front, where electron transport is mediated by Coulomb collisions, we estimate the CMB polarization degree at the level of 10-8 (˜10 nK). An increase of the effective electron collisionality due to plasma instabilities will reduce the effect. Such polarization, therefore, may be an independent probe of the electron collisionality in the ICM, which is one of the key properties of a high-β weakly collisional plasma from the point of view of both astrophysics and plasma theory.

Collisional and Radiative Relaxation of Antihydrogen.

NASA Astrophysics Data System (ADS)

Bass, E. M.; Dubin, D. H. E.

2007-11-01

Antihydrogen is produced in high-magnetic-field Penning traps by introducing antiprotons into a pure-positron plasma at cryogenic temperature T.ootnotetextG. Gabrielse et al., Phys. Rev. Lett. 89, 213401 (2002).^,ootnotetextM. Amoretti et al., Nature 419, 456 (2002). In the experimental regime, three-body recombination forms highly-excited atoms which exhibit classical guiding-center drift orbits.ootnotetextM.E. Glinsky and T.M. O'Neil, Phys. Fluids B 3, 1279 (1991).^,ootnotetextF. Robicheaux and J.D. Hanson, Phys. Rev. A 69, 010701 (2004). Using energy transition rates obtained from a Monte-Carlo simulation, we track the collisional evolution of a distribution of atoms from binding energies near T to Uc= e^2 (B^2/mec^2)^1/3, where atom dynamics is chaotic. While the flux through the kinetic bottleneck (U = 4 T) is proportional to T-9/2, data suggest that the flux at Uc (at a fixed time) does not scale strongly with T or magnetic field B. At Uc, radiation begins to take over as the principle energy-loss mechanism. Evolution due to radiation is tracked for a typical collisionally-evolved energy distribution to show that a small number of low-angular-momentum atoms radiate to the ground state rapidly, while others drop into slowly-radiating, circular orbits at intermediate energies.

The Fossilized Size Distribution of the Main Asteroid Belt

NASA Astrophysics Data System (ADS)

Bottke, W. F.; Durda, D.; Nesvorny, D.; Jedicke, R.; Morbidelli, A.

2003-05-01

At present, we do not understand how the main asteroid belt evolved into its current state. During the planet formation epoch, the primordial main belt (PMB) contained several Earth masses of material, enough to allow the asteroids to accrete on relatively short timescales (e.g., Weidenschilling 1977). The present-day main belt, however, only contains 5e-4 Earth masses of material (Petit et al. 2002). Constraints on this evolution come from (i) the observed fragments of differentiated asteroids, (ii) meteorites collected from numerous differentiated parent bodies, (iii) the presence of ˜ 10 prominent asteroid families, (iv) the "wavy" size-frequency distribution of the main belt, which has been shown to be a by-product of substantial collisional evolution (e.g., Durda et al. 1997), and (v) the still-intact crust of (4) Vesta. To explain the contradictions in the above constraints, we suggest the PMB evolved in this fashion: Planetesimals and planetary embryos accreted (and differentiated) in the PMB during the first few Myr of the solar system. Gravitational perturbations from these embryos dynamically stirred the main belt, enough to initiate fragmentation. When Jupiter reached its full size, some 10 Myr after the solar system's birth, its perturbations, together with those of the embryos, dynamically depleted the main belt region of ˜ 99% of its bodies. Much of this material was sent to high (e,i) orbits, where it continued to pummel the surviving main belt bodies at high impact velocities for more than 100 Myr. While some differentiated bodies in the PMB were disrupted, most were instead scattered; only small fragments from this population remain. This period of comminution and dynamical evolution in the PMB created, among other things, the main belt's wavy size distribution, such that it can be considered a "fossil" from this violent early epoch. From this time forward, however, relatively little collisional evolution has taken place in the main belt, consistent with the surprising paucity of prominent asteroid families. Preliminary modeling results of this scenario and implications will be presented.

SMACK: A New Algorithm for Modeling Collisions and Dynamics of Planetesimals in Debris Disks

NASA Technical Reports Server (NTRS)

Nesvold, Erika Rose; Kuchner, Marc J.; Rein, Hanno; Pan, Margaret

2013-01-01

We present the Superparticle Model/Algorithm for Collisions in Kuiper belts and debris disks (SMACK), a new method for simultaneously modeling, in 3-D, the collisional and dynamical evolution of planetesimals in a debris disk with planets. SMACK can simulate azimuthal asymmetries and how these asymmetries evolve over time. We show that SMACK is stable to numerical viscosity and numerical heating over 10(exp 7) yr, and that it can reproduce analytic models of disk evolution. We use SMACK to model the evolution of a debris ring containing a planet on an eccentric orbit. Differential precession creates a spiral structure as the ring evolves, but collisions subsequently break up the spiral, leaving a narrower eccentric ring.

Planetary geology: Impact processes on asteroids

NASA Technical Reports Server (NTRS)

Chapman, C. R.; Davis, D. R.; Greenberg, R.; Weidenschilling, S. J.

1982-01-01

The fundamental geological and geophysical properties of asteroids were studied by theoretical and simulation studies of their collisional evolution. Numerical simulations incorporating realistic physical models were developed to study the collisional evolution of hypothetical asteroid populations over the age of the solar system. Ideas and models are constrained by the observed distributions of sizes, shapes, and spin rates in the asteroid belt, by properties of Hirayama families, and by experimental studies of cratering and collisional phenomena. It is suggested that many asteroids are gravitationally-bound "rubble piles.' Those that rotate rapidly may have nonspherical quasi-equilibrium shapes, such as ellipsoids or binaries. Through comparison of models with astronomical data, physical properties of these asteroids (including bulk density) are determined, and physical processes that have operated in the solar system in primordial and subsequent epochs are studied.

Tides Versus Collisions in the Primordial Main Belt

NASA Astrophysics Data System (ADS)

Asphaug, E.; Bottke, W. F., Jr.; Morbidelli, A.; Petit, J.-M.

2000-10-01

Recent numerical and theoretical developments (e.g. Wetherill 1992; Chambers and Wetherill 1998) suggest that hundreds or thousands of Moon- to Mars-sized planetary embryos may have resided between 0.5 and 4 AU during early solar system accretion, to be scattered by mutual encounters and resonant perturbations with Jupiter and Saturn. At the same time, we lack compelling scenarios leading to the origin of iron meteorites, believed to represent the cores from approximately 85 different primordial planetesimals (Kail et al. 1994). Are M-type asteroids such as Kleopatra the exposed cores of these parent bodies? Early solar system collisions have been called upon to excavate this iron (Haack et al. 1996), although numerical impact models (Asphaug 1997) have found this task difficult to achieve, particularly when it is required to occur many dozens of times, yet not a single time for asteroid Vesta. One possibility, consistent with the unusual shape of Kleopatra, is tidal disassembly of collisionally weakened differentiated planetesimals by close encounters with primordial planetary embryos. Differentiation enhances the efficacy of tidal disassembly, which is probably already comparable (Asphaug and Benz 1996) to the efficacy of collisional disassembly, but only for bodies of very low strength. Tidal disassembly has the further advantage of stripping all material from a given isosurface, whereas collisions partition energy into both fast and slow debris, leaving behind a rock mantle. To further explore this idea, in comparison with the efficacy of collisional breakup of differentiated planetesimals, we determine the minimal encounter distances between evolving asteroids and the embryos as modeled by Petit et al. (2000). We then directly simulate these tidal encounters using a smooth particle hydrocode (SPH; Benz and Asphaug 1995), and compare tidal encounters to collisional encounters using the same code.

Variations on Debris Disks. IV. An Improved Analytical Model for Collisional Cascades

NASA Astrophysics Data System (ADS)

Kenyon, Scott J.; Bromley, Benjamin C.

2017-04-01

We derive a new analytical model for the evolution of a collisional cascade in a thin annulus around a single central star. In this model, r max the size of the largest object changes with time, {r}\\max \\propto {t}-γ , with γ ≈ 0.1-0.2. Compared to standard models where r max is constant in time, this evolution results in a more rapid decline of M d , the total mass of solids in the annulus, and L d , the luminosity of small particles in the annulus: {M}d\\propto {t}-(γ +1) and {L}d\\propto {t}-(γ /2+1). We demonstrate that the analytical model provides an excellent match to a comprehensive suite of numerical coagulation simulations for annuli at 1 au and at 25 au. If the evolution of real debris disks follows the predictions of the analytical or numerical models, the observed luminosities for evolved stars require up to a factor of two more mass than predicted by previous analytical models.

Comparison of Collisional and Electron-Based Dissociation Modes for Middle-Down Analysis of Multiply Glycosylated Peptides

NASA Astrophysics Data System (ADS)

Khatri, Kshitij; Pu, Yi; Klein, Joshua A.; Wei, Juan; Costello, Catherine E.; Lin, Cheng; Zaia, Joseph

2018-04-01

Analysis of singly glycosylated peptides has evolved to a point where large-scale LC-MS analyses can be performed at almost the same scale as proteomics experiments. While collisionally activated dissociation (CAD) remains the mainstay of bottom-up analyses, it performs poorly for the middle-down analysis of multiply glycosylated peptides. With improvements in instrumentation, electron-activated dissociation (ExD) modes are becoming increasingly prevalent for proteomics experiments and for the analysis of fragile modifications such as glycosylation. While these methods have been applied for glycopeptide analysis in isolated studies, an organized effort to compare their efficiencies, particularly for analysis of multiply glycosylated peptides (termed here middle-down glycoproteomics), has not been made. We therefore compared the performance of different ExD modes for middle-down glycopeptide analyses. We identified key features among the different dissociation modes and show that increased electron energy and supplemental activation provide the most useful data for middle-down glycopeptide analysis. [Figure not available: see fulltext.

The radial gradients and collisional properties of solar wind electrons

NASA Technical Reports Server (NTRS)

Ogilvie, K. W.; Scudder, J. D.

1978-01-01

The plasma electron detector on Mariner 10 is used to obtain measurements of electron density and temperature in the interplanetary medium between heliocentric distances of 0.85 and 0.45 AU. The observations show quantitatively that the core of the electron distribution function can be described as collisional at least for radial distances within 1 AU, since with a very few well-marked exceptions associated with high-speed streams, the Coulomb collisional momentum relaxation length is less than the density scale height at all times and all radial distances at which data were obtained. It is found that the Coulomb energy exchange collisions between the core and the (test) halo population are negligible. The power law exponent of the core temperature is about -0.3, whereas the halo temperature is almost independent of heliocentric distance.

The stellar content of the nuclear regions of Sc galaxies

NASA Technical Reports Server (NTRS)

Turnrose, B. E.

1976-01-01

Stellar-population syntheses based on absolute spectral energy distributions over the wavelength range from 3300 to 10,400 A are used to determine the stellar content of the nuclear regions of seven nearby Sc galaxies (NGC 628, 1073, 1084, 1637, 2903, 4321, and 5194). A linear-programming procedure is employed to construct models of the overall stellar populations whose spectra closely match those of the seven galaxies. Absolute measurements of the emission-line spectra of the nuclear regions are also provided. It is found that: (1) intrinsic reddening is probably present in each nuclear region; (2) the upper main sequence is substantially populated in most of the models; (3) the lower main sequence contributes insignificantly to the luminosity in all optimal solutions; (4) substantial contributions are made by evolved M stars at long wavelengths in all the models; (5) the model photometric M/L ratios are low, of the order of unity; and (6) the O-B stars arising naturally in the population models are just sufficient to provide the observed nuclear ionization in all the galaxies except NGC 5194, which may be collisionally ionized. The properties of the nuclear regions are shown to be consistent with the existence of a common initial mass function for star formation and a variety of time dependences for the star-formation process. A possibly significant correlation is noted between nuclear stellar content and overall dynamical properties in four of the galaxies.

GEO Collisional Risk Assessment Based on Analysis of NASA-WISE Data and Modeling

NASA Astrophysics Data System (ADS)

Howard, S.; Murray-Krezan, J.; Dao, P.; Surka, D.

From December 2009 thru 2011 the NASA Wide-Field Infrared Survey Explorer (WISE) gathered radiometrically exquisite measurements of debris in near Earth orbits, substantially augmenting the current catalog of known debris. The WISE GEO-belt debris population adds approximately 2,000 previously uncataloged objects. This paper describes characterization of the WISE GEO-belt orbital debris population in terms of location, epoch, and size. The WISE GEO-belt debris population characteristics are compared with the publically available U.S. catalog and previous descriptions of the GEO-belt debris population. We found that our results differ from previously published debris distributions, suggesting the need for updates to collision probability models and a better measurement-based understanding of the debris population. Previous studies of collisional rate in GEO invoke the presence of a large number of debris in the regime of sizes too small to track, i.e. not in the catalog, but large enough to cause significant damage and fragmentation in a collision. A common approach is to estimate that population of small debris by assuming that it is dominated by fragments and therefore should follow trends observed in fragmentation events or laboratory fragmentation tests. In other words, the population of debris can be extrapolated from trackable sizes to small sizes using an empirically determined trend of population as a function of size. We use new information suggested by the analysis of WISE IR measurements to propose an updated relationship. Our trend is an improvement because we expect that an IR emissive signature is a more reliable indicator of physical size. Based on the revised relationship, we re-estimate the total collisional rate in the GEO belt with the inclusion of projected uncatalogued debris and applying a conjunction assessment technique. Through modeling, we evaluate the hot spots near the geopotential wells and the effects of fragmentation in the GEO graveyard to the collision with GEO objects.

A study of extended zodiacal structures

NASA Technical Reports Server (NTRS)

Sykes, Mark V.

1990-01-01

Observations of cometary dust trails and zodiacal dust bands, discovered by the Infrared Astronomical Satellite (IRAS) were analyzed in a continuing effort to understand their nature and relationship to comets, asteroids, and processes effecting those bodies. A survey of all trails observed by IRAS has been completed, and analysis of this phenomenon continues. A total of 8 trails have been associated with known short-period comets (Churyumov-Gerasimenko, Encke, Gunn, Kopff, Pons-Winnecke, Schwassmann-Wachmann 1, Tempel 1, and Tempel 2), and a few faint trails have been detected which are not associated with any known comet. It is inferred that all short-period comets may have trails, and that the trails detected were seen as a consequence of observational selection effects. Were IRAS launched today, it would likely observe a largely different set of trails. The Tempel 2 trail exhibits a small but significant excess in color temperature relative to a blackbody at the same heliocentric distance. This excess may be due to the presence of a population of small, low-beta particles deriving from large particles within the trail, or a temperature gradient over the surface of large trail particles. Trails represent the very first stage in the formation and evolution of a meteor stream, and may also be the primary mechanism by which comets contribute to the interplanetary dust complex. A mathematical model of the spatial distribution of orbitally evolved collisional debris was developed which reproduces the zodiacal dust band phenomena and was used in the analysis of dust band observations made by IRAS. This has resulted in the principal zodiacal dust bands being firmly related to the principal Hirayama asteroid families. In addition, evidence for the collisional diffusion of the orbital elements of the dust particles has been found in the case of dust generated in the Eos asteroid family.

Hybrid reconstruction of field-reversed configurations

NASA Astrophysics Data System (ADS)

Steinhauer, Loren; TAE Team

2016-10-01

Field-reversed configurations (FRC) are poorly represented by fluid-based models and require instead an ion-distribution function. Two such populations are needed since ``core'' ions are roughly restricted to the region inside the separatrix, whereas ``periphery'' ions can escape along open field lines. The Vlasov equation governs the distribution, the general solution to which is an arbitrary function of the constants of motion (Hamiltonian, canonical angular momentum). Only a small subset of such distributions are realistic in view of collisions, which smooth the distribution, and instabilities, which reorganize the field structure. Collisions and end loss are included if the distribution is a solution to the Fokker-Planck (FP) equation. Vlasov and FP solutions are nearly identical in weakly-collisional plasmas. Numerical construction of such equilibria requires solving both Ampere's law for the magnetic flux variable and the ponderous task of a full velocity-space integration at each point. The latter can be done analytically by expressing the distribution as the superposition of simple basis elements. This procedure allows rapid reconstruction of evolving equilibria based on limited diagnostic observables in FRC experiments.

Classical impurity ion confinement in a toroidal magnetized fusion plasma.

PubMed

Kumar, S T A; Den Hartog, D J; Caspary, K J; Magee, R M; Mirnov, V V; Chapman, B E; Craig, D; Fiksel, G; Sarff, J S

2012-03-23

High-resolution measurements of impurity ion dynamics provide first-time evidence of classical ion confinement in a toroidal, magnetically confined plasma. The density profile evolution of fully stripped carbon is measured in MST reversed-field pinch plasmas with reduced magnetic turbulence to assess Coulomb-collisional transport without the neoclassical enhancement from particle drift effects. The impurity density profile evolves to a hollow shape, consistent with the temperature screening mechanism of classical transport. Corroborating methane pellet injection experiments expose the sensitivity of the impurity particle confinement time to the residual magnetic fluctuation amplitude.

Collisional-radiative nonequilibrium in partially ionized atomic nitrogen

NASA Technical Reports Server (NTRS)

Kunc, J. A.; Soon, W. H.

1989-01-01

A nonlinear collisional-radiative model for determination of nonequilibrium production of electrons, excited atoms, and bound-bound, dielectronic and continuum line intensities in stationary partially ionized atomic nitrogen is presented. Populations of 14 atomic levels and line intensities are calculated in plasma with T(e) = 8000-15,000 K and N(t) = 10 to the 12th - 10 to the 18th/cu cm. Transport of radiation is included by coupling the rate equations of production of the electrons and excited atoms with the radiation escape factors, which are not constant but depend on plasma conditions.

YORP and collisional shaping of the sub-populations, rotation rate and size-frequency distributions in the main-belt

NASA Astrophysics Data System (ADS)

Rossi, A.; Marzari, F.; Scheeres, D.; Jacobson, S.; Davis, D.

In the last several years a comprehensive asteroid-population-evolution model was developed incorporating both the YORP effect and collisional evolution \\citep{rossi_2009}, \\citep{marz_2011}, \\citep{jac_mnras}. From the results of this model we were able to match the observed main belt rotation rate distribution and to give a first plausible explanation of the observed excess of slow rotators, through a random walk-like evolution of the spin, induced by repeated collisions with small projectiles. Moreover, adding to the model the rotational fission hypothesis (i.e. when the rotation rate exceeds a critical value, erosion and binary formation occur; \\citealt{sch_2007}) and binary-asteroid evolution \\citep{jac_sch}, we first showed that the YORP-induced rotational-fission hypothesis has strong repercussions for the small size end of the main-belt asteroid size-frequency distribution. We also concluded that this hypothesis is consistent with observed asteroid-population statistics and with the observed sub-populations of binary asteroids, asteroid pairs and contact binaries. An overview of the results obtained, the modelling uncertainties and the ongoing work will be given.

Modifications to population rate equations resulting from correlations between collisional and radiative processes

NASA Technical Reports Server (NTRS)

Ballagh, R. J.; Cooper, J.

1984-01-01

There are many systems of physical interest for which a set of rate equations for level populations can provide insight. If the system has two (or more) different mechanisms for effecting transition between levels, total rates of transfer are usually taken as the sum of rates that the individual mechanisms would cause acting alone. Using the example of a hydrogen atom subjected to (ionic and electronic) collisions and external radiation, it is shown that when these individual mechanisms overlap, the total transfer rates must be modified to account for correlations between collisional and radiative processes. For a broad-band radiation field the modified rates have a simple physical interpretation. In the case of a narrow-band field the overlapping events may cause new coherences to appear and interpretation of the modified 'rates' is more complicated.

Thermalization of Heavy Ions in the Solar Wind

NASA Astrophysics Data System (ADS)

Tracy, Patrick J.; Kasper, Justin C.; Zurbuchen, Thomas H.; Raines, Jim M.; Shearer, Paul; Gilbert, Jason

2015-10-01

Observations of velocity distribution functions from the Advanced Composition Explorer/Solar Wind Ion Composition Spectrometer heavy ion composition instrument are used to calculate ratios of kinetic temperature and Coulomb collisional interactions of an unprecedented 50 ion species in the solar wind. These ions cover a mass per charge range of 1-5.5 amu/e and were collected in the time range of 1998-2011. We report the first calculation of the Coulomb thermalization rate between each of the heavy ion (A > 4 amu) species present in the solar wind along with protons (H+) and alpha particles (He2+). From these rates, we find that protons are the dominant source of Coulomb collisional thermalization for heavy ions in the solar wind and use this fact to calculate a collisional age for those heavy ion populations. The heavy ion thermal properties are well organized by this collisional age, but we find that the temperature of all heavy ions does not simply approach that of protons as Coulomb collisions become more important. We show that He2+ and C6+ follow a monotonic decay toward equal temperatures with protons with increasing collisional age, but O6+ shows a noted deviation from this monotonic decay. Furthermore, we show that the deviation from monotonic decay for O6+ occurs in solar wind of all origins, as determined by its Fe/O ratio. The observed differences in heavy ion temperature behavior point toward a local heating mechanism that favors ions depending on their charge and mass.

COLLISIONALLY BORN FAMILY ABOUT 87 SYLVIA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vokrouhlicky, David; Nesvorny, David; Bottke, William F.

There are currently more than 1000 multi-opposition objects known in the Cybele population, adjacent and exterior to the asteroid main belt, allowing a more detailed analysis than was previously possible. Searching for collisionally born clusters in this population, we find only one statistically robust case: a family of objects about (87) Sylvia. We use a numerical model to simulate the Sylvia family long-term evolution due to gravitational attraction from planets and thermal (Yarkovsky) effects and to explain its perturbed structure in the orbital element space. This allows us to conclude that the Sylvia family must be at least several hundredsmore » of million years old, in agreement with evolutionary timescales of Sylvia's satellite system. We find it interesting that other large Cybele-zone asteroids with known satellites-(107) Camilla and (121) Hermione-do not have detectable families of collisional fragments about them (this is because we assume that binaries with large primary and small secondary components are necessarily impact generated). Our numerical simulations of synthetic clusters about these asteroids show they would suffer a substantial dynamical depletion by a combined effect of diffusion in numerous weak mean-motion resonances and Yarkovsky forces provided their age is close to {approx}4 billion years. However, we also believe that a complete effacement of these two families requires an additional component, very likely due to resonance sweeping or other perturbing effects associated with the late Jupiter's inward migration. We thus propose that both Camilla and Hermione originally had their collisional families, as in the Sylvia case, but they lost them in an evolution that lasted a billion years. Their satellites are the only witnesses of these effaced families.« less

Outer edges of debris discs. How sharp is sharp?

NASA Astrophysics Data System (ADS)

Thébault, P.; Wu, Y.

2008-04-01

Context: Rings or annulus-like features have been observed in most imaged debris discs. Outside the main ring, while some systems (e.g., β Pictoris and AU Mic) exhibit smooth surface brightness profiles (SB) that fall off roughly as ~r-3.5, others (e.g. HR 4796A and HD 139664) display large drops in luminosity at the ring's outer edge and steeper radial luminosity profiles. Aims: We seek to understand this diversity of outer edge profiles under the “natural” collisional evolution of the system, without invoking external agents such as planets or gas. Methods: We use a multi-annulus statistical code to follow the evolution of a collisional population, ranging in size from dust grains to planetesimals and initially confined within a belt (the “birth ring”). The crucial effect of radiation pressure on the dynamics and spatial distribution of the smallest grains is taken into account. We explore the dependence of the resulting disc surface brightness profile on various parameters. Results: The disc typically evolves toward a “standard” steady state, where the radial surface brightness profile smoothly decreases with radius as r-3.5 outside the birth ring. This confirms and extends the semi-analytical study of Strubbe & Chiang (2006, ApJ, 648, 652) and provides a firm basis for interpreting observed discs. Deviations from this typical profile, in the form of a sharp outer edge and a steeper fall-off, occur for two “extreme” cases: 1) when the birth ring is so massive that it becomes radially optically thick for the smallest grains. However, the required disc mass is probably too high here to be realistic; 2) when the dynamical excitation of the dust-producing planetesimals is so low (< e> and < i> ≤ 0.01) that the smallest grains, which otherwise dominate the optical depth of the system, are preferentially depleted. This low-excitation case, although possibly not generic, cannot be ruled out by observations for most systems, . Conclusions: Our “standard” profile provides a satisfactory explanation for a large group of debris discs that show smooth outer edges and SB ∝ r-3.5. Systems with sharper outer edges, barring other confining agents, could still be explained by “natural” collisional evolution if their dynamical excitation is very low. We show that such a dynamically-cold case provides a satisfactory fit to the specific HR4796A ring.

Bi-lobed Shape of Comet 67P from a Collapsed Binary

NASA Astrophysics Data System (ADS)

Nesvorný, David; Parker, Joel; Vokrouhlický, David

2018-06-01

The Rosetta spacecraft observations revealed that the nucleus of comet 67P/Churyumov–Gerasimenko consists of two similarly sized lobes connected by a narrow neck. Here, we evaluate the possibility that 67P is a collapsed binary. We assume that the progenitor of 67P was a binary and consider various physical mechanisms that could have brought the binary components together, including small-scale impacts and gravitational encounters with planets. We find that 67P could be a primordial body (i.e., not a collisional fragment) if the outer planetesimal disk lasted ≲10 Myr before it was dispersed by migrating Neptune. The probability of binary collapse by impact is ≃30% for tightly bound binaries. Most km-class binaries become collisionally dissolved. Roughly 10% of the surviving binaries later evolve to become contact binaries during the disk dispersal, when bodies suffer gravitational encounters with Neptune. Overall, the processes described in this work do not seem to be efficient enough to explain the large fraction (∼67%) of bi-lobed cometary nuclei inferred from spacecraft imaging.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tracy, Patrick J.; Kasper, Justin C.; Zurbuchen, Thomas H.

Observations of velocity distribution functions from the Advanced Composition Explorer/Solar Wind Ion Composition Spectrometer heavy ion composition instrument are used to calculate ratios of kinetic temperature and Coulomb collisional interactions of an unprecedented 50 ion species in the solar wind. These ions cover a mass per charge range of 1–5.5 amu/e and were collected in the time range of 1998–2011. We report the first calculation of the Coulomb thermalization rate between each of the heavy ion (A > 4 amu) species present in the solar wind along with protons (H{sup +}) and alpha particles (He{sup 2+}). From these rates, wemore » find that protons are the dominant source of Coulomb collisional thermalization for heavy ions in the solar wind and use this fact to calculate a collisional age for those heavy ion populations. The heavy ion thermal properties are well organized by this collisional age, but we find that the temperature of all heavy ions does not simply approach that of protons as Coulomb collisions become more important. We show that He{sup 2+} and C{sup 6+} follow a monotonic decay toward equal temperatures with protons with increasing collisional age, but O{sup 6+} shows a noted deviation from this monotonic decay. Furthermore, we show that the deviation from monotonic decay for O{sup 6+} occurs in solar wind of all origins, as determined by its Fe/O ratio. The observed differences in heavy ion temperature behavior point toward a local heating mechanism that favors ions depending on their charge and mass.« less

A collisional-radiative model of iron vapour in a thermal arc plasma

NASA Astrophysics Data System (ADS)

Baeva, M.; Uhrlandt, D.; Murphy, A. B.

2017-06-01

A collisional-radiative model for the ground state and fifty effective excited levels of atomic iron, and one level for singly-ionized iron, is set up for technological plasmas. Attention is focused on the population of excited states of atomic iron as a result of excitation, de-excitation, ionization, recombination and spontaneous emission. Effective rate coefficients for ionization and recombination, required in non-equilibrium plasma transport models, are also obtained. The collisional-radiative model is applied to a thermal arc plasma. Input parameters for the collisional-radiative model are provided by a magnetohydrodynamic simulation of a gas-metal welding arc, in which local thermodynamic equilibrium is assumed and the treatment of the transport of metal vapour is based on combined diffusion coefficients. The results clearly identify the conditions in the arc, under which the atomic state distribution satisfies the Boltzmann distribution, with an excitation temperature equal to the plasma temperature. These conditions are met in the central part of the arc, even though a local temperature minimum occurs here. This provides assurance that diagnostic methods based on local thermodynamic equilibrium, in particular those of optical emission spectroscopy, are reliable here. In contrast, deviations from the equilibrium atomic-state distribution are obtained in the near-electrode and arc fringe regions. As a consequence, the temperatures determined from the ratio of line intensities and number densities obtained from the emission coefficient in these regions are questionable. In this situation, the collisional-radiative model can be used as a diagnostic tool to assist in the interpretation of spectroscopic measurements.

Collisions and drag in debris discs with eccentric parent belts

NASA Astrophysics Data System (ADS)

Löhne, T.; Krivov, A. V.; Kirchschlager, F.; Sende, J. A.; Wolf, S.

2017-08-01

Context. High-resolution images of circumstellar debris discs reveal off-centred rings that indicate past or ongoing perturbation, possibly caused by secular gravitational interaction with unseen stellar or substellar companions. The purely dynamical aspects of this departure from radial symmetry are well understood. However, the observed dust is subject to additional forces and effects, most notably collisions and drag. Aims: To complement the studies of dynamics, we therefore aim to understand how the addition of collisional evolution and drag forces creates new asymmetries and strengthens or overrides existing ones. Methods: We augmented our existing numerical code Analysis of Collisional Evolution (ACE) by an azimuthal dimension, the longitude of periapse. A set of fiducial discs with global eccentricities ranging from 0 to 0.4 was evolved over gigayear timescales. Size distribution and spatial variation of dust were analysed and interpreted. We discuss the basic impact of belt eccentricity on spectral energy distributions and images. Results: We find features imposed on characteristic timescales. First, radiation pressure defines size cut-offs that differ between periapse and apoapse, resulting in an asymmetric halo. The differences in size distribution make the observable asymmetry of the halo depend on wavelength. Second, collisional equilibrium prefers smaller grains on the apastron side of the parent belt, reducing the effect of pericentre glow and the overall asymmetry. Third, Poynting-Robertson drag fills the region interior to an eccentric belt such that the apastron side is more tenuous. Interpretation and prediction of the appearance in scattered light is problematic when spatial and size distribution are coupled.

Martian Dust Devil Electron Avalanche Process and Associated Electrochemistry

NASA Technical Reports Server (NTRS)

Jackson, Telana L.; Farrell, William M.; Delory, Gregory T.; Nithianandam, Jeyasingh

2010-01-01

Mars' dynamic atmosphere displays localized dust devils and larger, global dust storms. Based on terrestrial analog studies, electrostatic modeling, and laboratory work these features will contain large electrostatic fields formed via triboelectric processes. In the low-pressure Martian atmosphere, these fields may create an electron avalanche and collisional plasma due to an increase in electron density driven by the internal electrical forces. To test the hypothesis that an electron avalanche is sustained under these conditions, a self-consistent atmospheric process model is created including electron impact ionization sources and electron losses via dust absorption, electron dissociation attachment, and electron/ion recombination. This new model is called the Dust Devil Electron Avalanche Model (DDEAM). This model solves simultaneously nine continuity equations describing the evolution of the primary gaseous chemical species involved in the electrochemistry. DDEAM monitors the evolution of the electrons and primary gas constituents, including electron/water interactions. We especially focus on electron dynamics and follow the electrons as they evolve in the E field driven collisional gas. When sources and losses are self-consistently included in the electron continuity equation, the electron density grows exponentially with increasing electric field, reaching an equilibrium that forms a sustained time-stable collisional plasma. However, the character of this plasma differs depending upon the assumed growth rate saturation process (chemical saturation versus space charge). DDEAM also shows the possibility of the loss of atmospheric methane as a function of electric field due to electron dissociative attachment of the hydrocarbon. The methane destruction rates are presented and can be included in other larger atmospheric models.

A new method for calculating time-dependent atomic level populations

NASA Technical Reports Server (NTRS)

Kastner, S. O.

1981-01-01

A method is described for reducing the number of levels to be dealt with in calculating time-dependent populations of atoms or ions in plasmas. The procedure effectively extends the collisional-radiative model to consecutive stages of ionization, treating ground and metastable levels explicitly and excited levels implicitly. Direct comparisons of full and simulated systems are carried out for five-level models.

Rapid disappearance of a warm, dusty circumstellar disk.

PubMed

Melis, Carl; Zuckerman, B; Rhee, Joseph H; Song, Inseok; Murphy, Simon J; Bessell, Michael S

2012-07-04

Stars form with gaseous and dusty circumstellar envelopes, which rapidly settle into disks that eventually give rise to planetary systems. Understanding the process by which these disks evolve is paramount in developing an accurate theory of planet formation that can account for the variety of planetary systems discovered so far. The formation of Earth-like planets through collisional accumulation of rocky objects within a disk has mainly been explored in theoretical and computational work in which post-collision ejecta evolution typically is ignored, although recent work has considered the fate of such material. Here we report observations of a young, Sun-like star (TYC 8241 2652 1) where infrared flux from post-collisional ejecta has decreased drastically, by a factor of about 30, over a period of less than two years. The star seems to have gone from hosting substantial quantities of dusty ejecta, in a region analogous to where the rocky planets orbit in the Solar System, to retaining at most a meagre amount of cooler dust. Such a phase of rapid ejecta evolution has not been previously predicted or observed, and no currently available physical model satisfactorily explains the observations.

Hungaria Asteroid Region Telescopic Spectral Survey (HARTSS) II: Spectral Homogeneity Among Hungaria Family Asteroids

NASA Astrophysics Data System (ADS)

Lucas, Michael P.; Emery, Joshua; Pinilla-Alonso, Noemi; Lindsay, Sean S.; MacLennan, Eric M.; Cartwright, Richard; Reddy, Vishnu; Sanchez, Juan A.; Thomas, Cristina A.; Lorenzi, Vania

2017-10-01

Spectral observations of asteroid family members provide valuable information regarding parent body interiors, the source regions of near-Earth asteroids, and the link between meteorites and their parent bodies. Hungaria family asteroids constitute the closest samples to the Earth from a collisional family (~1.94 AU), permitting observations of smaller fragments than accessible for Main Belt families. We have carried out a ground-based observational campaign - Hungaria Asteroid Region Telescopic Spectral Survey (HARTSS) - to record reflectance spectra of these preserved samples from the inner-most primordial asteroid belt. During HARTSS phase one (Lucas et al. [2017]. Icarus 291, 268-287) we found that ~80% of the background population is comprised of stony S-complex asteroids that exhibit considerable spectral and mineralogical diversity. In HARTSS phase two, we turn our attention to family members and hypothesize that the Hungaria collisional family is homogeneous. We test this hypothesis through taxonomic classification, albedo estimates, and spectral properties.During phase two of HARTSS we acquired near-infrared (NIR) spectra of 50 new Hungarias (19 family; 31 background) with SpeX/IRTF and NICS/TNG. We analyzed X-type family spectra for NIR color indices (0.85-J J-K), and a subtle ~0.9 µm absorption feature that may be attributed to Fe-poor orthopyroxene. Surviving fragments of an asteroid collisional family typically exhibit similar taxonomies, albedos, and spectral properties. Spectral analysis of X-type Hungaria family members and independently calculated WISE albedo determinations for 428 Hungaria asteroids is consistent with this scenario. Furthermore, ~1/4 of the background population exhibit similar spectral properties and albedos to family X-types.Spectral observations of 92 Hungaria region asteroids acquired during both phases of HARTSS uncover a compositionally heterogeneous background and spectral homogeneity down to ~2 km for collisional family members. Taxonomy, albedos, and spectral properties reveal that the Hungaria family progenitor was an igneous body that formed under reduced conditions, and was compositionally consistent with the enstatite achondrite (i.e., aubrite) meteorite group.

The Russian effort in establishing large atomic and molecular databases

NASA Astrophysics Data System (ADS)

Presnyakov, Leonid P.

1998-07-01

The database activities in Russia have been developed in connection with UV and soft X-ray spectroscopic studies of extraterrestrial and laboratory (magnetically confined and laser-produced) plasmas. Two forms of database production are used: i) a set of computer programs to calculate radiative and collisional data for the general atom or ion, and ii) development of numeric database systems with the data stored in the computer. The first form is preferable for collisional data. At the Lebedev Physical Institute, an appropriate set of the codes has been developed. It includes all electronic processes at collision energies from the threshold up to the relativistic limit. The ion -atom (and -ion) collisional data are calculated with the methods developed recently. The program for the calculations of the level populations and line intensities is used for spectrical diagnostics of transparent plasmas. The second form of database production is widely used at the Institute of Physico-Technical Measurements (VNIIFTRI), and the Troitsk Center: the Institute of Spectroscopy and TRINITI. The main results obtained at the centers above are reviewed. Plans for future developments jointly with international collaborations are discussed.

Fine-structure-resolution for Rovibrational Excitation of CN Due to H2

NASA Astrophysics Data System (ADS)

Byrd, Nat; Yang, Benhui H.; Stancil, Phillip C.

2018-06-01

Diatomic molecules can be readily excited in interstellar environments exposed to intense UV radiation, such as the inner rim of a protoplanetary disk. Non-thermal populations of excited rovibrational levels can result, for example, following decay from electronically excited states to the electronic ground state. Competition between radiative decay and collisional processes, mostly due to H2, determine the resulting rovibrational emission spectrum. For CN, and other open-shell molecules, the resulting spectrum will be complicated due to fine-structure splitting of the rotational levels. In some cases, fine-structure resolution has been previously computed for rotational transitions in atom- or diatom-diatom collisional processes. Here we present the first fine-structure resolution for vibrational deexcitation for CN colliding with H2. The collisional cross sections were computed using a 6D potential energy surface with a full close-coupling approach. Fine-structure resolution is obtained by adopting an angular momentum recoupling scheme to transform the scattering matrices to a recoupled basis. Here we present low-energy calculations for the v=1 to 0 transition.This work was supported by NASA Grant NNX16AF09G.

Perpendicular dynamics of runaway electrons in tokamak plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fernandez-Gomez, I.; Martin-Solis, J. R.; Sanchez, R.

2012-10-15

In this paper, it will be shown that the runaway phenomenon in tokamak plasmas cannot be reduced to a one-dimensional problem, based on the competence between electric field acceleration and collisional friction losses in the parallel direction. A Langevin approach, including collisional diffusion in velocity space, will be used to analyze the two-dimensional runaway electron dynamics. An investigation of the runaway probability in velocity space will yield a criterion for runaway, which will be shown to be consistent with the results provided by the more simple test particle description of the runaway dynamics [Fuchs et al., Phys. Fluids 29, 2931more » (1986)]. Electron perpendicular collisional scattering will be found to play an important role, relaxing the conditions for runaway. Moreover, electron pitch angle scattering perpendicularly broadens the runaway distribution function, increasing the electron population in the runaway plateau region in comparison with what it should be expected from electron acceleration in the parallel direction only. The perpendicular broadening of the runaway distribution function, its dependence on the plasma parameters, and the resulting enhancement of the runaway production rate will be discussed.« less

An ITPA joint experiment to study runaway electron generation and suppression

DOE PAGES

Granetz, Robert S.; Esposito, B.; Kim, J. H.; ...

2014-07-11

Recent results from an ITPA joint experiment to study the onset, growth, and decay of relativistic electrons (REs) indicate that loss mechanisms other than collisional damping may play a dominant role in the dynamics of the RE population, even during the quiescent Ip flattop. Understanding the physics of RE growth and mitigation is motivated by the theoretical prediction that disruptions of full-current (15 MA) ITER discharges could generate up to 10 MA of REs with 10-20 MeV energies. The ITPA MHD group is conducting a joint experiment to measure the RE detection threshold conditions on a number of tokamaks undermore » quasi-steady-state conditions in which V loop, n e, and REs can be well-diagnosed and compared to collisional theory. Data from DIII-D, C-Mod, FTU, KSTAR, and TEXTOR have been obtained so far, and the consensus to date is that the threshold E-field is significantly higher than predicted by relativistic collisional theory, or conversely, the density required to damp REs is significantly less than predicted, which could have significant implications for RE mitigation on ITER.« less

Local thermodynamic equilibrium in rapidly heated high energy density plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aslanyan, V.; Tallents, G. J.

Emission spectra and the dynamics of high energy density plasmas created by optical and Free Electron Lasers (FELs) depend on the populations of atomic levels. Calculations of plasma emission and ionization may be simplified by assuming Local Thermodynamic Equilibrium (LTE), where populations are given by the Saha-Boltzmann equation. LTE can be achieved at high densities when collisional processes are much more significant than radiative processes, but may not be valid if plasma conditions change rapidly. A collisional-radiative model has been used to calculate the times taken by carbon and iron plasmas to reach LTE at varying densities and heating rates.more » The effect of different energy deposition methods, as well as Ionization Potential Depression are explored. This work shows regimes in rapidly changing plasmas, such as those created by optical lasers and FELs, where the use of LTE is justified, because timescales for plasma changes are significantly longer than the times needed to achieve an LTE ionization balance.« less

Simulation of collisional transport processes and the stability of planetary rings

NASA Technical Reports Server (NTRS)

Brophy, Thomas G.; Esposito, Larry W.

1989-01-01

The utility of the phase-space fluid method for the study of planetary ring dynamics is presently demonstrated through the numerical solution of a model kinetic equation for a flattened Keplerian disk. Attention is given to ringlets composed of single-sized particles, as well as to ringlets composed of two different-sized particles; in the latter case, the ringlets evolve in such a way that the lighter particles are confined by the heavier ones. The results obtained indicate that some natural process may sharpen the optical depth profile of edges even without an external forcing mechanism, and that intermediate optical depths are dynamically preferred in some cases.

Collisional Transfer of Population and Orientation in NaK

NASA Astrophysics Data System (ADS)

Wolfe, C. M.; Ashman, S.; Huennekens, J.; Beser, B.; Bai, J.; Lyyra, A. M.

2010-03-01

We report current work to study transfer of population and orientation in collisions of NaK molecules with argon and potassium atoms using polarization labeling (PL) and laser- induced fluorescence (LIF) spectroscopy. In the PL experiment, a circularly polarized pump laser excites a specific NaK A^1&+circ;(v'=16, J') <- X^1&+circ;(v''=0, J'±1) transition, creating an orientation (non-uniform MJ' level distribution) in both levels. The linearly polarized probe laser is scanned over various 3^1π(v, J'±1) <- A^1&+circ;(v'=16, J') transitions. The probe laser passes through a crossed linear polarizer before detection, and signal is recorded if the probe laser polarization has been modified by the vapor (which occurs when it comes into resonance with an oriented level). Using both spectroscopic methods, analysis of weak collisional satellite lines adjacent to these directly populated lines, as a function of argon buffer gas pressure and cell temperature, allows us to discern separately the effects collisions with argon atoms and potassium atoms have on the population and orientation of the molecule. In addition, code has been written which provides a theoretical analysis of the process, through a solution of the density matrix equations of motion for the system.

Linking the micro and macro: L-H transition dynamics and threshold physics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Malkov, M. A., E-mail: mmalkov@ucsd.edu; Diamond, P. H.; Miki, K.

2015-03-15

The links between the microscopic dynamics and macroscopic threshold physics of the L → H transition are elucidated. Emphasis is placed on understanding the physics of power threshold scalings, and especially on understanding the minimum in the power threshold as a function of density P{sub thr} (n). By extending a numerical 1D model to evolve both electron and ion temperatures, including collisional coupling, we find that the decrease in P{sub thr} (n) along the low-density branch is due to the combination of an increase in collisional electron-to-ion energy transfer and an increase in the heating fraction coupled to the ions.more » Both processes strengthen the edge diamagnetic electric field needed to lock in the mean electric field shear for the L→H transition. The increase in P{sub thr} (n) along the high-density branch is due to the increase with ion collisionality of damping of turbulence-driven shear flows. Turbulence driven shear flows are needed to trigger the transition by extracting energy from the turbulence. Thus, we identify the critical transition physics components of the separatrix ion heat flux and the zonal flow excitation. The model reveals a power threshold minimum in density scans as a crossover between the threshold decrease supported by an increase in heat fraction received by ions (directly or indirectly, from electrons) and a threshold increase, supported by the rise in shear flow damping. The electron/ion heating mix emerges as important to the transition, in that it, together with electron-ion coupling, regulates the edge diamagnetic electric field shear. The importance of possible collisionless electron-ion heat transfer processes is explained.« less

Collisional-radiative simulations of a supersonic and radiatively cooled aluminum plasma jet

NASA Astrophysics Data System (ADS)

Espinosa, G.; Gil, J. M.; Rodriguez, R.; Rubiano, J. G.; Mendoza, M. A.; Martel, P.; Minguez, E.; Suzuki-Vidal, F.; Lebedev, S. V.; Swadling, G. F.; Burdiak, G.; Pickworth, L. A.; Skidmore, J.

2015-12-01

A computational investigation based on collisional-radiative simulations of a supersonic and radiatively cooled aluminum plasma jet is presented. The jet, both in vacuum and in argon ambient gas, was produced on the MAGPIE (Mega Ampere Generator for Plasma Implosion Experiments) generator and is formed by ablation of an aluminum foil driven by a 1.4 MA, 250 ns current pulse in a radial foil Z-pinch configuration. In this work, population kinetics and radiative properties simulations of the jet in different theoretical approximations were performed. In particular, local thermodynamic equilibrium (LTE), non-LTE steady state (SS) and non-LTE time dependent (TD) models have been considered. This study allows us to make a convenient microscopic characterization of the aluminum plasma jet.

Collisional Removal of OH (X (sup 2)Pi, nu=7) by O2, N2, CO2, and N2O

NASA Technical Reports Server (NTRS)

Knutsen, Karen; Dyer, Mark J.; Copeland, Richard A.

1996-01-01

Collisional removal rate constants for the OH (X 2PI, nu = 7) radical are measured for the colliders O2, CO2, and N2O, and an upper limit is established for N2. OH(nu = 4) molecules, generated in a microwave discharge flow cell by the reaction of hydrogen atoms with ozone, are excited to v = 7 by the output of a pulsed infrared laser via direct vibrational overtone excitation. The temporal evolution of the P = 7 population is probed as a function of the collider gas partial pressure by a time-delayed pulsed ultraviolet laser. Fluorescence from the B 21 + state is detected in the visible spectral region.

Solution Dependence of the Collisional Activation of Ubiquitin [M+7H]7+ Ions

PubMed Central

Shi, Huilin; Atlasevich, Natalya; Merenbloom, Samuel I.; Clemmer, David E.

2014-01-01

The solution dependence of gas-phase unfolding for ubiquitin [M+7H]7+ ions has been studied by ion mobility spectrometry-mass spectrometry (IMS-MS). Different acidic water:methanol solutions are used to favor the native (N), more helical (A), or unfolded (U) solution states of ubiquitin. Unfolding of gas-phase ubiquitin ions is achieved by collisional heating and newly formed structures are examined by IMS. With an activation voltage of 100 V, a selected distribution of compact structures unfolds, forming three resolvable elongated states (E1-E3). The relative populations of these elongated structures depend strongly on the solution composition. Activation of compact ions from aqueous solutions known to favor N-state ubiquitin produces mostly the E1 type elongated state, whereas, activation of compact ions from methanol containing solutions that populate A-state ubiquitin favors the E3 elongated state. Presumably, this difference arises because of differences in precursor ion structures emerging from solution. Thus, it appears that information about solution populations can be retained after ionization, selection, and activation to produce the elongated states. These data as well as others are discussed. PMID:24658799

Collisional transfer of population and orientation in NaK

NASA Astrophysics Data System (ADS)

Wolfe, C. M.; Ashman, S.; Bai, J.; Beser, B.; Ahmed, E. H.; Lyyra, A. M.; Huennekens, J.

2011-05-01

Collisional satellite lines with |ΔJ| ≤ 58 have been identified in recent polarization spectroscopy V-type optical-optical double resonance (OODR) excitation spectra of the Rb2 molecule [H. Salami et al., Phys. Rev. A 80, 022515 (2009)]. Observation of these satellite lines clearly requires a transfer of population from the rotational level directly excited by the pump laser to a neighboring level in a collision of the molecule with an atomic perturber. However to be observed in polarization spectroscopy, the collision must also partially preserve the angular momentum orientation, which is at least somewhat surprising given the extremely large values of ΔJ that were observed. In the present work, we used the two-step OODR fluorescence and polarization spectroscopy techniques to obtain quantitative information on the transfer of population and orientation in rotationally inelastic collisions of the NaK molecules prepared in the 2(A)1Σ+(v' = 16, J' = 30) rovibrational level with argon and potassium perturbers. A rate equation model was used to study the intensities of these satellite lines as a function of argon pressure and heat pipe oven temperature, in order to separate the collisional effects of argon and potassium atoms. Using a fit of this rate equation model to the data, we found that collisions of NaK molecules with potassium atoms are more likely to transfer population and destroy orientation than collisions with argon atoms. Collisions with argon atoms show a strong propensity for population transfer with ΔJ = even. Conversely, collisions with potassium atoms do not show this ΔJ = even propensity, but do show a propensity for ΔJ = positive compared to ΔJ = negative, for this particular initial state. The density matrix equations of motion have also been solved numerically in order to test the approximations used in the rate equation model and to calculate fluorescence and polarization spectroscopy line shapes. In addition, we have measured rate coefficients for broadening of NaK 31Π ← 2(A)1Σ+spectral lines due to collisions with argon and potassium atoms. Additional broadening, due to velocity changes occurring in rotationally inelastic collisions, has also been observed.

Collisional transfer of population and orientation in NaK.

PubMed

Wolfe, C M; Ashman, S; Bai, J; Beser, B; Ahmed, E H; Lyyra, A M; Huennekens, J

2011-05-07

Collisional satellite lines with |ΔJ| ≤ 58 have been identified in recent polarization spectroscopy V-type optical-optical double resonance (OODR) excitation spectra of the Rb(2) molecule [H. Salami et al., Phys. Rev. A 80, 022515 (2009)]. Observation of these satellite lines clearly requires a transfer of population from the rotational level directly excited by the pump laser to a neighboring level in a collision of the molecule with an atomic perturber. However to be observed in polarization spectroscopy, the collision must also partially preserve the angular momentum orientation, which is at least somewhat surprising given the extremely large values of ΔJ that were observed. In the present work, we used the two-step OODR fluorescence and polarization spectroscopy techniques to obtain quantitative information on the transfer of population and orientation in rotationally inelastic collisions of the NaK molecules prepared in the 2(A)(1)Σ(+)(v' = 16, J' = 30) rovibrational level with argon and potassium perturbers. A rate equation model was used to study the intensities of these satellite lines as a function of argon pressure and heat pipe oven temperature, in order to separate the collisional effects of argon and potassium atoms. Using a fit of this rate equation model to the data, we found that collisions of NaK molecules with potassium atoms are more likely to transfer population and destroy orientation than collisions with argon atoms. Collisions with argon atoms show a strong propensity for population transfer with ΔJ = even. Conversely, collisions with potassium atoms do not show this ΔJ = even propensity, but do show a propensity for ΔJ = positive compared to ΔJ = negative, for this particular initial state. The density matrix equations of motion have also been solved numerically in order to test the approximations used in the rate equation model and to calculate fluorescence and polarization spectroscopy line shapes. In addition, we have measured rate coefficients for broadening of NaK 3(1)Π ← 2(A)(1)Σ(+)spectral lines due to collisions with argon and potassium atoms. Additional broadening, due to velocity changes occurring in rotationally inelastic collisions, has also been observed.

How primordial is the structure of comet 67P/C-G (and of comets in general)?

NASA Astrophysics Data System (ADS)

Morbidelli, Alessandro; Jutzi, Martin; Benz, Willy; Toliou, Anastasia; Rickman, Hans; Bottke, William; Brasser, Ramon

2016-10-01

Several properties of the comet 67P-CG suggest that it is a primordial planetesimal. On the other hand, the size-frequency distribution (SFD) of the craters detected by the New Horizons missions at the surface of Pluto and Charon reveal that the SFD of trans-Neptunian objects smaller than 100km in diameter is very similar to that of the asteroid belt. Because the asteroid belt SFD is at collisional equilibrium, this observation suggests that the SFD of the trans-Neptunian population is at collisional equilibrium as well, implying that comet-size bodies should be the product of collisional fragmentation and not primordial objects. To test whether comet 67P-CG could be a (possibly lucky) survivor of the original population, we conducted a series of numerical impact experiments, where an object with the shape and the density of 67P-CG, and material strength varying from 10 to 1,000 Pa, is hit on the "head" by a 100m projectile at different speeds. From these experiments we derive the impact energy required to disrupt the body catastrophically, or destroy its bi-lobed shape, as a function of impact speed. Next, we consider a dynamical model where the original trans-Neptunian disk is dispersed during a phase of temporary dynamical instability of the giant planets, which successfully reproduces the scattered disk and Oort cloud populations inferred from the current fluxes of Jupiter-family and long period comets. We find that, if the dynamical dispersal of the disk occurs late, as in the Late Heavy Bombardment hypothesis, a 67P-CG-like body has a negligible probability to avoid all catastrophic collisions. During this phase, however, the collisional equilibrium SFD measured by the New Horizons mission can be established. Instead, if the dispersal of the disk occurred as soon as gas was removed, a 67P-CG-like body has about a 20% chance to avoid catastrophic collisions. Nevertheless it would still undergo 10s of reshaping collisions. We estimate that, statistically, the last reshaping collision should have happened 250My-1Gy ago, implying that the actual morphology of 67P-CG should be younger than this age.

Nonequilibrium shock-heated nitrogen flows using a rovibrational state-to-state method

NASA Astrophysics Data System (ADS)

Panesi, M.; Munafò, A.; Magin, T. E.; Jaffe, R. L.

2014-07-01

A rovibrational collisional model is developed to study the internal energy excitation and dissociation processes behind a strong shock wave in a nitrogen flow. The reaction rate coefficients are obtained from the ab initio database of the NASA Ames Research Center. The master equation is coupled with a one-dimensional flow solver to study the nonequilibrium phenomena encountered in the gas during a hyperbolic reentry into Earth's atmosphere. The analysis of the populations of the rovibrational levels demonstrates how rotational and vibrational relaxation proceed at the same rate. This contrasts with the common misconception that translational and rotational relaxation occur concurrently. A significant part of the relaxation process occurs in non-quasi-steady-state conditions. Exchange processes are found to have a significant impact on the relaxation of the gas, while predissociation has a negligible effect. The results obtained by means of the full rovibrational collisional model are used to assess the validity of reduced order models (vibrational collisional and multitemperature) which are based on the same kinetic database. It is found that thermalization and dissociation are drastically overestimated by the reduced order models. The reasons of the failure differ in the two cases. In the vibrational collisional model the overestimation of the dissociation is a consequence of the assumption of equilibrium between the rotational energy and the translational energy. The multitemperature model fails to predict the correct thermochemical relaxation due to the failure of the quasi-steady-state assumption, used to derive the phenomenological rate coefficient for dissociation.

GRANADA: A Generic RAdiative traNsfer AnD non-LTE population algorithm

NASA Astrophysics Data System (ADS)

Funke, B.; López-Puertas, M.; García-Comas, M.; Kaufmann, M.; Höpfner, M.; Stiller, G. P.

2012-09-01

We present in this paper the Generic RAdiative traNsfer AnD non-LTE population Algorithm (GRANADA). This model is able to compute non-LTE populations for vibrational, rotational, spin (i.e., NO and OH), and electronic (i.e., O2) states in a given planetary atmosphere. The model is very flexible and can be used for computing very accurate non-LTE populations or for calculating reasonably accurate but at high speed non-LTE populations in order to implement it into non-LTE remote sensing retrievals. We describe the model in detail and present an update of the non-LTE collisional processes and their rate coefficients for the most important molecules in Earth's atmosphere. In addition, we have applied the model to the most important atmospheric infrared emitters including 13 species (H2O, CO2, O3, N2O, CO, CH4, O2, NO, NO2, HNO3, OH, N2, and HCN) and 460 excited vibrational or electronic energy levels. Non-LTE populations for all these energy levels have been calculated for 48 reference atmospheres expanding from the surface up to 200 km, including seasonal (January, April, July and October), latitudinal (75°S, 45°S, 10°S, 10°N, 45°N, 75°N) and diurnal (day and night) coverages. The effects of the most recent updates of the non-LTE collisional parameters on the non-LTE populations are briefly described. This climatology is available online to the community and it can be used for estimating non-LTE effects at specific conditions and for testing and validation studies.

Asteroid rotation. I - Tabulation and analysis of rates, pole positions and shapes. II - A theory for the collisional evolution of rotation rates

NASA Technical Reports Server (NTRS)

Harris, A. W.; Burns, J. A.

1979-01-01

Rotation properties and shape data for 182 asteroids are compiled and analyzed, and a collisional model for the evolution of the mean rotation rate of asteroids is proposed. Tabulations of asteroid rotation rates, taxonomic types, pole positions, sizes and shapes and plots of rotation frequency and light curve amplitude against size indicate that asteroid rotational frequency increases with decreasing size for all asteroids except those of the C or S classes. Light curve data also indicate that small asteroids are more irregular in shape than large asteroids. The dispersion in rotation rates observed is well represented by a three dimensional Maxwellian distribution, suggestive of collisional encounters between asteroids. In the proposed model, the rotation rate is found to tend toward an equilibrium value, at which spin-up due to infrequent, large collisions is balanced by a drag due to the larger number of small collisions. The lower mean rotation rate of C-type asteroids is attributed to a lower means density of that class, and the increase in rotation rate with decreasing size is interpreted as indicative of a substantial population of strong asteroids.

Computational model of collisional-radiative nonequilibrium plasma in an air-driven type laser propulsion

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ogino, Yousuke; Ohnishi, Naofumi

A thrust power of a gas-driven laser-propulsion system is obtained through interaction with a propellant gas heated by a laser energy. Therefore, understanding the nonequilibrium nature of laser-produced plasma is essential for increasing available thrust force and for improving energy conversion efficiency from a laser to a propellant gas. In this work, a time-dependent collisional-radiative model for air plasma has been developed to study the effects of nonequilibrium atomic and molecular processes on population densities for an air-driven type laser propulsion. Many elementary processes are considered in the number density range of 10{sup 12}/cm{sup 3}<=N<=10{sup 19}/cm{sup 3} and the temperaturemore » range of 300 K<=T<=40,000 K. We then compute the unsteady nature of pulsively heated air plasma. When the ionization relaxation time is the same order as the time scale of a heating pulse, the effects of unsteady ionization are important for estimating air plasma states. From parametric computations, we determine the appropriate conditions for the collisional-radiative steady state, local thermodynamic equilibrium, and corona equilibrium models in that density and temperature range.« less

Compositional study of asteroids in the Erigone collisional family using visible spectroscopy at the 10.4 m GTC

NASA Astrophysics Data System (ADS)

Morate, David; de León, Julia; De Prá, Mário; Licandro, Javier; Cabrera-Lavers, Antonio; Campins, Humberto; Pinilla-Alonso, Noemí; Alí-Lagoa, Víctor

2016-02-01

Two primitive near-Earth asteroids, (101955) Bennu and (162173) Ryugu, will be visited by a spacecraft with the aim of returning samples back to Earth. Since these objects are believed to originate in the inner main belt primitive collisional families (Erigone, Polana, Clarissa, and Sulamitis) or in the background of asteroids outside these families, the characterization of these primitive populations will enhance the scientific return of the missions. The main goal of this work is to shed light on the composition of the Erigone collisional family by means of visible spectroscopy. Asteroid (163) Erigone has been classified as a primitive object, and we expect the members of this family to be consistent with the spectral type of the parent body. We have obtained visible spectra (0.5-0.9 μm) for 101 members of the Erigone family, using the OSIRIS instrument at the 10.4 m Gran Telescopio Canarias. We found that 87% of the objects have typically primitive visible spectra consistent with that of (163) Erigone. In addition, we found that a significant fraction of these objects (~50%) present evidence of aqueous alteration.

Simulations of Collisional Disruption at the Catastrophic Impact Energy Threshold: Effect of the Target's Internal Structure and Diameter

NASA Astrophysics Data System (ADS)

Michel, P.; Benz, W.; Richardson, D. C.

2005-08-01

Recent simulations of asteroid break-ups, including both the fragmentation of the parent body and the gravitational interactions of the fragments, have allowed to reproduced successfully the main properties of asteroid families formed in different regimes of impact energy. Here, using the same kind of simulations, we concentrate on a single regime of impact energy, the so-called catastrophic threshold usually designated by Qcrit, which results in the escape of half of the target's mass. Considering a wide range of diameter values and two kinds of internal structures of the parent body, monolithic and pre-shattered, we analyse their potential influences on the value of Qcrit and on the collisional outcome limited here to the fragment size and ejection speed distributions, which are the main outcome properties used by collisional models to study the evolutions of the different populations of small bodies. For all the considered diameters and the two internal structures of the parent body, we confirm that the process of gravitational reaccumulation is at the origin of the largest remnant's mass. We then find that, for a given diameter of the parent body, the impact energy corresponding to the catastrophic disruption threshold is highly dependent on the internal structure of the parent body. In particular, a pre-shattered parent body containing only damaged zones but no macroscopic voids is easier to disrupt than a monolithic parent body. Other kinds of internal properties that can also characterize small bodies in real populations will be investigated in a future work.

Lunar and Planetary Science XXXV: Asteroids, Meteors, Comets

NASA Technical Reports Server (NTRS)

2004-01-01

The session Asteroids, Meteors, Comets includes the following topics: 1) Where Some Asteroid Parent Bodies; 2) The Collisional Evolution of the Main Belt Population; 3) On Origin of Ecliptic Families of Periodic Comets; 4) Mineralogy and Petrology of Laser Irradiated Carbonaceous Chondrite Mighei; and 5) Interaction of the Gould Belt and the Earth.

TB3 - Measurement of vibrational-vibrational exchange of highly excited states of diatomic molecules where the collisional probability is approaching unity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nachshon, Y.; Coleman, P.

1975-08-01

An experimental method, employing a fast population perturbation technique, is described to measure the vibrational-vibrational (VV) collisional probability P/sub r,r-1/sup/v,v+1/ of a diatomic molecule for large vibrational quantum numbers r and v. The relaxation of the perturbed gain of a pair of vibrational levels is a function of the vibrational populations and VV rate constants k/sub r,r-1/sup v,v+1/. The numerical inversion of the VV master rate equations determining this relaxation does not give unique value for k/sub r,r-1/ sup v,v+1/ (or P/sub r,r-1/sup v,v+1), but lower bounds can be evaluated and with empirical formulas, having several adjustable constants, it canmore » be shown that probabilities of the order of unity are required to satisfy the experimental data. The method has been specifically applied to the CO molecule, but other molecules such as HX(X = F, Cl, Br), NO, etc., could also be measured.« less

Resonant and Secular Families of the Kuiper Belt

NASA Astrophysics Data System (ADS)

Chiang, E. I.; Lovering, J. R.; Millis, R. L.; Buie, M. W.; Wasserman, L. H.; Meech, K. J.

2003-06-01

We review ongoing efforts to identify occupants of mean-motion resonances (MMRs) and collisional families in the Edgeworth-Kuiper belt. Direct integrations of trajectories of Kuiper belt objects (KBOs) reveal the 1:1 (Trojan), 5:4, 4:3, 3:2 (Plutino), 5:3, 7:4, 9:5, 2:1 (Twotino), and 5:2 MMRs to be inhabited. Apart from the Trojan, resonant KBOs typically have large orbital eccentricities and inclinations. The observed pattern of resonance occupation is consistent with resonant capture and adiabatic excitation by a migratory Neptune; however, the dynamically cold initial conditions prior to resonance sweeping that are typically assumed by migration simulations are probably inadequate. Given the dynamically hot residents of the 5:2 MMR and the substantial inclinations observed in all exterior MMRs, a fraction of the primordial belt was likely dynamically pre-heated prior to resonance sweeping. A pre-heated population may have arisen as Neptune gravitationally scattered objects into trans-Neptunian space. The spatial distribution of Twotinos offers a unique diagnostic of Neptune's migration history. The Neptunian Trojan population may rival the Jovian Trojan population, and the former's existence is argued to rule out violent orbital histories for Neptune. Finally, lowest-order secular theory is applied to several hundred non-resonant KBOs with well-measured orbits to update proposals of collisional families. No convincing family is detected.

Experimental measurement of self-diffusion in a strongly coupled plasma

DOE PAGES

Strickler, Trevor S.; Langin, Thomas K.; McQuillen, Paul; ...

2016-05-17

Here, we present a study of the collisional relaxation of ion velocities in a strongly coupled, ultracold neutral plasma on short time scales compared to the inverse collision rate. The measured average velocity of a tagged population of ions is shown to be equivalent to the ion-velocity autocorrelation function. We thus gain access to fundamental aspects of the single-particle dynamics in strongly coupled plasmas and to the ion self-diffusion constant under conditions where experimental measurements have been lacking. Nonexponential decay towards equilibrium of the average velocity heralds non-Markovian dynamics that are not predicted by traditional descriptions of weakly coupled plasmas.more » This demonstrates the utility of ultracold neutral plasmas for studying the effects of strong coupling on collisional processes, which is of interest for dense laboratory and astrophysical plasmas.« less

Compact configurations within small evolving groups of galaxies

NASA Astrophysics Data System (ADS)

Mamon, G. A.

Small virialized groups of galaxies are evolved with a gravitational N-body code, where the galaxies and a diffuse background are treated as single particles, but with mass and luminosity profiles attached, which enbles the estimation of parameters such as internal energies, half-mass radii, and the softened potential energies of interaction. The numerical treatment includes mergers, collisional stripping, tidal limitation by the mean-field of the background (evaluated using a combination of instantaneous and impulsive formulations), galaxy heating from collisons, and background heating from dynamical friction. The groups start out either as dense as appear the groups in Hickson's (1982) catalog, or as loose as appear those in Turner and Gott's (1976a) catalog, and they are simulated many times (usually 20) with different initial positions and velocities. Dense groups of galaxies with massive dark haloes coalesce into a single galaxy and lose their compact group appearance in approximately 3 group half-mass crossing times, while dense groups of galaxies without massive haloes survive the merger instability for 15 half-mass crossing times (in a more massive background to keep the same total group mass).

Simple Analytic Collisional Rates for non-LTE Vibrational Populations in Astrophysical Environments: the Cases of Circumstellar SiO Masers and Shocked H2

NASA Astrophysics Data System (ADS)

Bieniek, Ronald

2008-05-01

Rates for collisionally induced transitions between molecular vibrational levels are important in modeling a variety of non-LTE processes in astrophysical environments. Two examples are SiO masering in circumstellar envelopes in certain late-type stars [1] and the vibrational populations of molecular hydrogen in shocked interstellar medium [cf 2]. A simple exponential-potential model of molecular collisions leads to a two-parameter analytic expression for state-to-state and thermally averaged rates for collisionally induced vibrational-translational (VT) transitions in diatomic molecules [3,4]. The thermally averaged rates predicted by this formula have been shown to be in excellent numerical agreement with absolute experimental and quantum mechanical rates over large temperature ranges and initial vibrational excitation levels in a variety of species, e.g., OH, O2, N2 [3] and even for the rate of H2(v=1)+H2, which changes by five orders of magnitude in the temperature range 50-2000 K [4]. Analogous analytic rates will be reported for vibrational transitions in SiO due to collisions with H2 and compared to the numerical fit of quantum-mechanical rates calculated by Bieniek and Green [5]. [1] Palov, A.P., Gray, M.D., Field, D., & Balint-Kurti, G.G. 2006, ApJ, 639, 204. [2] Flower, D. 2007, Molecular Collisions in the Interstellar Medium (Cambridge: Cambridge Univ. Press) [3] Bieniek, R.J. & Lipson, S.J. 1996, Chem. Phys. Lett. 263, 276. [4] Bieniek, R.J. 2006, Proc. NASA LAW (Lab. Astrophys. Workshop) 2006, 299; http://www.physics.unlv.edu/labastro/nasalaw2006proceedings.pdf. [5] Bieniek, R.J., & Green, S. 1983, ApJ, 265, L29 and 1983, ApJ, 270, L101.

Testing Collisional Scaling Laws: Comparing with Observables

NASA Astrophysics Data System (ADS)

Davis, D. R.; Marzari, F.; Farinella, P.

1999-09-01

How large bodies break up in response to energetic collisions is a problem that has attracted considerable attention in recent years. Ever more sophisticated computation methods have also been developed; prominent among these are hydrocode simulations of collisional disruption by Benz and Asphaug (1999, Icarus, in press), Love and Ahrens (1996, LPSC XXVII, 777-778), and Melosh and Ryan (1997, Icarus 129, 562-564). Durda et al. (1998, Icarus 135, 431-440) used the observed asteroid size distribution to infer a scaling algorithm. The present situation is that there are several proposed scaling laws that differ by as much as two orders of magnitude at particular sizes. We have expanded upon the work of Davis et al. (1994, Goutelas Proceedings) and tested the suite of proposed scaling algorithms against observations of the main-belt asteroids. The effects of collisions among the asteroids produce the following observables: (a) the size distribution has been significantly shaped by collisions, (b) collisions have produced about 25 well recognized asteroid families, and (c) the basaltic crust of Vesta has been largely preserved in the face of about 4.5 Byr of impacts. We will present results from a numerical simulation of asteroid collisional evolution over the age of the solar system using proposed scaling laws and a range of hypothetical initial populations.

The impact of rapid evolution on population dynamics in the wild: experimental test of eco-evolutionary dynamics.

PubMed

Turcotte, Martin M; Reznick, David N; Hare, J Daniel

2011-11-01

Rapid evolution challenges the assumption that evolution is too slow to impact short-term ecological dynamics. This insight motivates the study of 'Eco-Evolutionary Dynamics' or how evolution and ecological processes reciprocally interact on short time scales. We tested how rapid evolution impacts concurrent population dynamics using an aphid (Myzus persicae) and an undomesticated host (Hirschfeldia incana) in replicated wild populations. We manipulated evolvability by creating non-evolving (single clone) and potentially evolving (two-clone) aphid populations that contained genetic variation in intrinsic growth rate. We observed significant evolution in two-clone populations whether or not they were exposed to predators and competitors. Evolving populations grew up to 42% faster and attained up to 67% higher density, compared with non-evolving control populations but only in treatments exposed to competitors and predators. Increased density also correlates with relative fitness of competing clones suggesting a full eco-evolutionary dynamic cycle defined as reciprocal interactions between evolution and density. © 2011 Blackwell Publishing Ltd/CNRS.

The Cultural Evolution of Human Communication Systems in Different Sized Populations: Usability Trumps Learnability

PubMed Central

Fay, Nicolas; Ellison, T. Mark

2013-01-01

This study examines the intergenerational transfer of human communication systems. It tests if human communication systems evolve to be easy to learn or easy to use (or both), and how population size affects learnability and usability. Using an experimental-semiotic task, we find that human communication systems evolve to be easier to use (production efficiency and reproduction fidelity), but harder to learn (identification accuracy) for a second generation of naïve participants. Thus, usability trumps learnability. In addition, the communication systems that evolve in larger populations exhibit distinct advantages over those that evolve in smaller populations: the learnability loss (from the Initial signs) is more muted and the usability benefits are more pronounced. The usability benefits for human communication systems that evolve in a small and large population is explained through guided variation reducing sign complexity. The enhanced performance of the communication systems that evolve in larger populations is explained by the operation of a content bias acting on the larger pool of competing signs. The content bias selects for information-efficient iconic signs that aid learnability and enhance usability. PMID:23967243

The cultural evolution of human communication systems in different sized populations: usability trumps learnability.

PubMed

Fay, Nicolas; Ellison, T Mark

2013-01-01

This study examines the intergenerational transfer of human communication systems. It tests if human communication systems evolve to be easy to learn or easy to use (or both), and how population size affects learnability and usability. Using an experimental-semiotic task, we find that human communication systems evolve to be easier to use (production efficiency and reproduction fidelity), but harder to learn (identification accuracy) for a second generation of naïve participants. Thus, usability trumps learnability. In addition, the communication systems that evolve in larger populations exhibit distinct advantages over those that evolve in smaller populations: the learnability loss (from the Initial signs) is more muted and the usability benefits are more pronounced. The usability benefits for human communication systems that evolve in a small and large population is explained through guided variation reducing sign complexity. The enhanced performance of the communication systems that evolve in larger populations is explained by the operation of a content bias acting on the larger pool of competing signs. The content bias selects for information-efficient iconic signs that aid learnability and enhance usability.

Is the Eureka cluster a collisional family of Mars Trojan asteroids?

NASA Astrophysics Data System (ADS)

Christou, Apostolos A.; Borisov, Galin; Dell'Oro, Aldo; Cellino, Alberto; Bagnulo, Stefano

2017-09-01

We explore the hypothesis that the Eureka family of sub-km asteroids in the L5 region of Mars could have formed in a collision. We estimate the size distribution index from available information on family members; model the orbital dispersion of collisional fragments; and carry out a formal calculation of the collisional lifetime as a function of size. We find that, as initially conjectured by Rivkin et al. (2003), the collisional lifetime of objects the size of (5261) Eureka is at least a few Gyr, significantly longer than for similar-sized Main Belt asteroids. In contrast, the observed degree of orbital compactness is inconsistent with all but the least energetic family-forming collisions. Therefore, the family asteroids may be ejecta from a cratering event sometime in the past ∼ 1 Gyr if the orbits are gradually dispersed by gravitational diffusion and the Yarkovsky effect (Ćuk et al., 2015). The comparable sizes of the largest family members require either negligible target strength or a particular impact geometry under this scenario (Durda et al., 2007; Benavidez et al., 2012). Alternatively, the family may have formed by a series of YORP-induced fission events (Pravec et al., 2010). The shallow size distribution of the family is similar to that of small MBAs (Gladman et al., 2009) interpreted as due to the dominance of this mechanism for Eureka-family-sized asteroids (Jacobson et al., 2014). However, our population index estimate is likely a lower limit due to the small available number of family asteroids and observational incompleteness. Future searches for fainter family members, further observational characterisation of the known Trojans' physical properties as well as orbital and rotational evolution modelling will help distinguish between different formation models.

Geological and Petrological Characteristics of Oligocene Magmatic Rocks in The Biga Peninsula, NW Turkey

NASA Astrophysics Data System (ADS)

Erenoglu, Oya

2016-04-01

Oligocene magmatic activity in the Biga Peninsula (NW-Anatolia) produced widespread volcano-plutonic complexes. The study region, where in north of the Evciler village in the middle of Biga Peninsula includes these igneous assemblages. In this study, the petrographic and geochemical characteristics of igneous rocks in the region were investigated as well as the geological locations. The magmatic rocks are classified as 6 different units using their lithostratigraphical properties. The volcanism in the region starts with basaltic andesite lava including basalt dykes in the Lower Oligocene. In the Upper Oligocene, the evolved magma by crustal contamination produced commonly dacitic and andesitic lavas. The volcanism continued with andesitic lavas which had significant alterations in the region during this period. Evciler pluton including granite and granodiorite composition with shallow intrusive, was located with the related volcanism at the same time. The volcanic products, i.e. andesitic and trachydacitic lavas, was completed in the interval between Upper Oligocene and Lower Miocene. The post-collisional Oligocene sequence is associated with calc-alkaline composition and it has middle, high-K. Trace and rare earth elements (REE) diagrams show the enrichment in both large-ion lithophile elements (LILE) and light rare earth elements (LREE) with respect to the high field strength elements (HFSE), and a significant increment in heavy rare earth element consumption (HREE). The features of major, trace and rare earth elements of plutonic and volcanic rocks and the compositional variations of Oligocene volcanic group indicate increasing amounts of partial melting, crustal contamination and/or assimilation. The Oligocene post-collisional volcanism in Biga Peninsula points out the lithospheric mantle source enriched by subduction which controlled by slab break-off and lithospheric delamination. Acknowledgement. This study was supported by Canakkale Onsekiz Mart University Scientific Research Project Coordination Unit (Project no: FBA-2015-566) Keywords: Biga Peninsula, oligocene, post-collisional volcanism, petrology

Strength of selection pressure is an important parameter contributing to the complexity of antibiotic resistance evolution.

PubMed

Oz, Tugce; Guvenek, Aysegul; Yildiz, Sadik; Karaboga, Enes; Tamer, Yusuf Talha; Mumcuyan, Nirva; Ozan, Vedat Burak; Senturk, Gizem Hazal; Cokol, Murat; Yeh, Pamela; Toprak, Erdal

2014-09-01

Revealing the genetic changes responsible for antibiotic resistance can be critical for developing novel antibiotic therapies. However, systematic studies correlating genotype to phenotype in the context of antibiotic resistance have been missing. In order to fill in this gap, we evolved 88 isogenic Escherichia coli populations against 22 antibiotics for 3 weeks. For every drug, two populations were evolved under strong selection and two populations were evolved under mild selection. By quantifying evolved populations' resistances against all 22 drugs, we constructed two separate cross-resistance networks for strongly and mildly selected populations. Subsequently, we sequenced representative colonies isolated from evolved populations for revealing the genetic basis for novel phenotypes. Bacterial populations that evolved resistance against antibiotics under strong selection acquired high levels of cross-resistance against several antibiotics, whereas other bacterial populations evolved under milder selection acquired relatively weaker cross-resistance. In addition, we found that strongly selected strains against aminoglycosides became more susceptible to five other drug classes compared with their wild-type ancestor as a result of a point mutation on TrkH, an ion transporter protein. Our findings suggest that selection strength is an important parameter contributing to the complexity of antibiotic resistance problem and use of high doses of antibiotics to clear infections has the potential to promote increase of cross-resistance in clinics. © The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Correction of the near threshold behavior of electron collisional excitation cross-sections in the plane-wave Born approximation

NASA Astrophysics Data System (ADS)

Kilcrease, D. P.; Brookes, S.

2013-12-01

The modeling of NLTE plasmas requires the solution of population rate equations to determine the populations of the various atomic levels relevant to a particular problem. The equations require many cross sections for excitation, de-excitation, ionization and recombination. A simple and computational fast way to calculate electron collisional excitation cross-sections for ions is by using the plane-wave Born approximation. This is essentially a high-energy approximation and the cross section suffers from the unphysical problem of going to zero near threshold. Various remedies for this problem have been employed with varying degrees of success. We present a correction procedure for the Born cross-sections that employs the Elwert-Sommerfeld factor to correct for the use of plane waves instead of Coulomb waves in an attempt to produce a cross-section similar to that from using the more time consuming Coulomb Born approximation. We compare this new approximation with other, often employed correction procedures. We also look at some further modifications to our Born Elwert procedure and its combination with Y.K. Kim's correction of the Coulomb Born approximation for singly charged ions that more accurately approximate convergent close coupling calculations.

Planetesimal formation by sweep-up coagulation

NASA Astrophysics Data System (ADS)

Windmark, Fredrik; Birnstiel, Til; Ormel, Chris W.; Dullemond, Cornelis P.

2013-07-01

The formation of planetesimals is often accredited to collisional sticking of dust grains in the protoplanetary disk. The exact process is however unknown, as collisions between larger aggregates tend to lead to fragmentation or bouncing rather than sticking. These growth barriers tend to halt the dust growth already at millimeters or centimeters in size, which is far below the kilometer-sizes that are needed for gravity to aid in the accretion. To study how far dust coagulation can proceed, we have developed a new collision model based on the latest laboratory experiments, and have used it together with a dust-size evolution code capable of resolving all grain interactions in the protoplanetary disk. We find that for the general dust population, bouncing and fragmenting collisions prevent the growth above millimeter-sizes. However, a small number of lucky particles can grow larger than the rest by only interacting at low, sticky velocities. As they grow, they become increasingly resilient to fragmentation caused by the small grains. In this way, two populations are formed: One which remains small due to the collisional barriers, and one that continues to grow by sweeping up the smaller grains around them.

Infrared Spectroscopy of Mobility-Selected H+-Gly-Pro-Gly-Gly (GPGG)

NASA Astrophysics Data System (ADS)

Masson, Antoine; Kamrath, Michael Z.; Perez, Marta A. S.; Glover, Matthew S.; Rothlisberger, U.; Clemmer, David E.; Rizzo, Thomas R.

2015-09-01

We report the first results from a new instrument capable of acquiring infrared spectra of mobility-selected ions. This demonstration involves using ion mobility to first separate the protonated peptide Gly-Pro-Gly-Gly (GPGG) into two conformational families with collisional cross-sections of 93.8 and 96.8 Å2. After separation, each family is independently analyzed by acquiring the infrared predissociation spectrum of the H2-tagged molecules. The ion mobility and spectroscopic data combined with density functional theory (DFT) based molecular dynamics simulations confirm the presence of one major conformer per family, which arises from cis/ trans isomerization about the proline residue. We induce isomerization between the two conformers by using collisional activation in the drift tube and monitor the evolution of the ion distribution with ion mobility and infrared spectroscopy. While the cis-proline species is the preferred gas-phase structure, its relative population is smaller than that of the trans-proline species in the initial ion mobility drift distribution. This suggests that a portion of the trans-proline ion population is kinetically trapped as a higher energy conformer and may retain structural elements from solution.

Dynamical evolution of a fictitious population of binary Neptune Trojans

NASA Astrophysics Data System (ADS)

Brunini, Adrián

2018-03-01

We present numerical simulations of the evolution of a synthetic population of Binary Neptune Trojans, under the influence of the solar perturbations and tidal friction (the so-called Kozai cycles and tidal friction evolution). Our model includes the dynamical influence of the four giant planets on the heliocentric orbit of the binary centre of mass. In this paper, we explore the evolution of initially tight binaries around the Neptune L4 Lagrange point. We found that the variation of the heliocentric orbital elements due to the libration around the Lagrange point introduces significant changes in the orbital evolution of the binaries. Collisional processes would not play a significant role in the dynamical evolution of Neptune Trojans. After 4.5 × 109 yr of evolution, ˜50 per cent of the synthetic systems end up separated as single objects, most of them with slow diurnal rotation rate. The final orbital distribution of the surviving binary systems is statistically similar to the one found for Kuiper Belt Binaries when collisional evolution is not included in the model. Systems composed by a primary and a small satellite are more fragile than the ones composed by components of similar sizes.

Collisional Shift and Broadening of Iodine Spectral Lines in Air Near 543 nm

NASA Technical Reports Server (NTRS)

Fletcher, D. G.; McDaniel, J. C.

1995-01-01

The collisional processes that influence the absorption of monochromatic light by iodine in air have been investigated. Measurements were made in both a static cell and an underexpanded jet flow over the range of properties encountered in typical compressible-flow aerodynamic applications. Experimentally measured values of the collisional shift and broadening coefficients were 0.058 +/- 0.004 and 0.53 +/- 0.010 GHz K(exp 0.7)/torr, respectively. The measured shift value showed reasonable agreement with theoretical calculations based on Lindholm-Foley collisional theory for a simple dispersive potential. The measured collisional broadening showed less favorable agreement with the calculated value.

The effect of electron collisions on rotational excitation of cometary water

NASA Technical Reports Server (NTRS)

Xie, Xingfa; Mumma, Michael J.

1991-01-01

The e-H2O collisional rate for exciting rotational transitions in cometary water is evaluated for conditions found in Comet Halley. The e-H2O collisional rate exceeds that for excitation by neutral-neutral collisions at distances exceeding 3000 km from the cometary nucleus, in the case of the O sub 00 yields 1 sub 11 transition. The estimates are based on theoretical and experimental studies of e-H2O collisions, on ion and electron parameters acquired in-situ by instruments on the Giotto and Vega spacecraft, and on results obtained from models of the cometary ionosphere. The contribution of electron collisions may explain the need for large water-water cross-sections in models which neglect the effect of electrons. The importance of electron collisions is enhanced for populations of water molecules in regions where their rotational lines are optically thick.

The missing large impact craters on Ceres.

PubMed

Marchi, S; Ermakov, A I; Raymond, C A; Fu, R R; O'Brien, D P; Bland, M T; Ammannito, E; De Sanctis, M C; Bowling, T; Schenk, P; Scully, J E C; Buczkowski, D L; Williams, D A; Hiesinger, H; Russell, C T

2016-07-26

Asteroids provide fundamental clues to the formation and evolution of planetesimals. Collisional models based on the depletion of the primordial main belt of asteroids predict 10-15 craters >400 km should have formed on Ceres, the largest object between Mars and Jupiter, over the last 4.55 Gyr. Likewise, an extrapolation from the asteroid Vesta would require at least 6-7 such basins. However, Ceres' surface appears devoid of impact craters >∼280 km. Here, we show a significant depletion of cerean craters down to 100-150 km in diameter. The overall scarcity of recognizable large craters is incompatible with collisional models, even in the case of a late implantation of Ceres in the main belt, a possibility raised by the presence of ammoniated phyllosilicates. Our results indicate that a significant population of large craters has been obliterated, implying that long-wavelength topography viscously relaxed or that Ceres experienced protracted widespread resurfacing.

The effect of electron collisions on rotational populations of cometary water

NASA Technical Reports Server (NTRS)

Xie, Xingfa; Mumma, Michael J.

1992-01-01

The e-H2O collisional rate for exciting rotational transitions in cometary water is evaluated for conditions found in Comet Halley during the Giotto spacecraft encounter. In the case of the 0(00)-1(11) rotational transition, the e-H2O collisional rate exceeds that for excitation by neutral-neutral collisions at distances exceeding 3000 km from the cometary nucleus. The estimates are based on theoretical and experimental studies of e-H2O collisions, on ion and electron parameters acquired in situ by instruments on the Giotto and Vega spacecraft, and on results obtained from models of the cometary ionosphere. Thus, the rotational temperature of the water molecule in the intermediate coma may be controlled by collisions with electrons rather than with neutral molecules, and the rotational temperature retrieved from high-resolution IR spectra of water in Comet Halley may reflect electron temperatures rather than neutral gas temperatures in the intermediate coma.

The missing large impact craters on Ceres

USGS Publications Warehouse

Marchi, S.; Ermakov, A.; Raymond, C.A.; Fu, R.R.; O'Brien, D.P.; Bland, Michael T.; Ammannito, E.; De Sanctis, M.C.; Bowling, Tim; Schenk, P.; Scully, J.E.C.; Buczkowski, D.L.; Williams, D.A.; Hiesinger, H.; Russell, C.T.

2016-01-01

Asteroids provide fundamental clues to the formation and evolution of planetesimals. Collisional models based on the depletion of the primordial main belt of asteroids predict 10–15 craters >400 km should have formed on Ceres, the largest object between Mars and Jupiter, over the last 4.55 Gyr. Likewise, an extrapolation from the asteroid Vesta would require at least 6–7 such basins. However, Ceres’ surface appears devoid of impact craters >~280 km. Here, we show a significant depletion of cerean craters down to 100–150 km in diameter. The overall scarcity of recognizable large craters is incompatible with collisional models, even in the case of a late implantation of Ceres in the main belt, a possibility raised by the presence of ammoniated phyllosilicates. Our results indicate that a significant population of large craters has been obliterated, implying that long-wavelength topography viscously relaxed or that Ceres experienced protracted widespread resurfacing.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chhiber, R; Usmanov, AV; Matthaeus, WH

Simple estimates of the number of Coulomb collisions experienced by the interplanetary plasma to the point of observation, i.e., the “collisional age”, can be usefully employed in the study of non-thermal features of the solar wind. Usually these estimates are based on local plasma properties at the point of observation. Here we improve the method of estimation of the collisional age by employing solutions obtained from global three-dimensional magnetohydrodynamics simulations. This enables evaluation of the complete analytical expression for the collisional age without using approximations. The improved estimation of the collisional timescale is compared with turbulence and expansion timescales tomore » assess the relative importance of collisions. The collisional age computed using the approximate formula employed in previous work is compared with the improved simulation-based calculations to examine the validity of the simplified formula. We also develop an analytical expression for the evaluation of the collisional age and we find good agreement between the numerical and analytical results. Finally, we briefly discuss the implications for an improved estimation of collisionality along spacecraft trajectories, including Solar Probe Plus.« less

Theory of "laser distillation" of enantiomers: purification of a racemic mixture of randomly oriented dimethylallene in a collisional environment.

PubMed

Gerbasi, David; Shapiro, Moshe; Brumer, Paul

2006-02-21

Enantiomeric control of 1,3 dimethylallene in a collisional environment is examined. Specifically, our previous "laser distillation" scenario wherein three perpendicular linearly polarized light fields are applied to excite a set of vib-rotational eigenstates of a randomly oriented sample is considered. The addition of internal conversion, dissociation, decoherence, and collisional relaxation mimics experimental conditions and molecular decay processes. Of greatest relevance is internal conversion which, in the case of dimethylallene, is followed by molecular dissociation. For various rates of internal conversion, enantiomeric control is maintained in this scenario by a delicate balance between collisional relaxation of excited dimethylallene that enhances control and collisional dephasing, which diminishes control.

Impact of the pedestal plasma density on dynamics of edge localized mode crashes and energy loss scaling

DOE PAGES

Xu, X. Q.; Ma, J. F.; Li, G. Q.

2014-12-29

The latest BOUT++ studies show an emerging understanding of dynamics of edge localized mode(ELM) crashes and the consistent collisionality scaling of ELMenergy losses with the world multi-tokamak database. A series of BOUT++ simulations are conducted to investigate the scaling characteristics of the ELMenergy losses vs collisionality via a density scan. Moreover, the linear results demonstrate that as the pedestal collisionality decreases, the growth rate of the peeling-ballooning modes decreases for high n but increases for low n (1 < n < 5), therefore the width of the growth rate spectrum γ(n) becomes narrower and the peak growth shifts to lowermore » n. For nonlinear BOUT++ simulations show a two-stage process of ELM crash evolution of (i) initial bursts of pressure blob and void creation and (ii) inward void propagation. The inward void propagation stirs the top of pedestal plasma and yields an increasing ELM size with decreasing collisionality after a series of micro-bursts. The pedestal plasma density plays a major role in determining the ELMenergy loss through its effect on the edge bootstrap current and ion diamagnetic stabilization. Finally, the critical trend emerges as a transition (1) linearly from ballooning-dominated states at high collisionality to peeling-dominated states at low collisionality with decreasing density and (2) nonlinearly from turbulence spreading dynamics at high collisionality into avalanche-like dynamics at low collisionality.« less

Experimental evolution of insect immune memory versus pathogen resistance.

PubMed

Khan, Imroze; Prakash, Arun; Agashe, Deepa

2017-12-20

Under strong pathogen pressure, insects often evolve resistance to infection. Many insects are also protected via immune memory (immune priming), whereby sublethal exposure to a pathogen enhances survival after secondary infection. Theory predicts that immune memory should evolve when the pathogen is highly virulent, or when pathogen exposure is relatively rare. However, there are no empirical tests of these hypotheses, and the adaptive benefits of immune memory relative to direct resistance against a pathogen are poorly understood. To determine the selective pressures and ecological conditions that shape immune evolution, we imposed strong pathogen selection on flour beetle ( Tribolium castaneum ) populations, infecting them with Bacillus thuringiensis (Bt) for 11 generations. Populations injected first with heat-killed and then live Bt evolved high basal resistance against multiple Bt strains. By contrast, populations injected only with a high dose of live Bt evolved a less effective but strain-specific priming response. Control populations injected with heat-killed Bt did not evolve priming; and in the ancestor, priming was effective only against a low Bt dose. Intriguingly, one replicate population first evolved priming and subsequently evolved basal resistance, suggesting the potential for dynamic evolution of different immune strategies. Our work is the first report showing that pathogens can select for rapid modulation of insect priming ability, allowing hosts to evolve divergent immune strategies (generalized resistance versus specific immune memory) with potentially distinct mechanisms. © 2017 The Author(s).

On the He(plus) triplet line intensities

NASA Technical Reports Server (NTRS)

Daltabuit, E.; Cox, D.

1971-01-01

The theoretical calculations of helium triplet line strengths, including collisional enhancement, are compared to astronomical observations. Both are plotted on an I(10830)/I(5876) vs I(5876)/I(4471) plane. It appears that the theory of helium triplet line strengths agrees with present observations, and that the question of an additional depopulation mechanism for the 2 3S population is probably predicted correctly within 30%.

Universal collisional activation ion trap mass spectrometry

DOEpatents

McLuckey, S.A.; Goeringer, D.E.; Glish, G.L.

1993-04-27

A universal collisional activation ion trap comprises an ion trapping means containing a bath gas and having connected thereto a noise signal generator. A method of operating a universal collisional activation ion trap comprises the steps of: providing an ion trapping means; introducing into the ion trapping means a bath gas; and, generating a noise signal within the ion trapping means; introducing into the ion trapping means a substance that, when acted upon by the noise signal, undergoes collisional activation to form product ions.

Universal collisional activation ion trap mass spectrometry

DOEpatents

McLuckey, Scott A.; Goeringer, Douglas E.; Glish, Gary L.

1993-01-01

A universal collisional activation ion trap comprises an ion trapping means containing a bath gas and having connected thereto a noise signal generator. A method of operating a universal collisional activation ion trap comprises the steps of: providing an ion trapping means; introducing into the ion trapping means a bath gas; and, generating a noise signal within the ion trapping means; introducing into the ion trapping means a substance that, when acted upon by the noise signal, undergoes collisional activation to form product ions.

Collisional plateaus. [in earth and Venus lithospheres

NASA Technical Reports Server (NTRS)

Morgan, P.; Burke, K.

1985-01-01

Aspects of the geology of collisional plateaus formed by the thickening of continental crust are briefly reviewed. The history of studies of collisional plateaus is summarized, and igneous activity in collisional plateaus is discussed. Isostatic considerations pertaining to these plateaus are addressed, developing models of isostatic support of topography which illustrate the importance of compressional tectonics in the creation of high altitude plateaus. Possible analogous environments on Venus are considered. Finally, the paradox of extension associated with compression in the plateaus is discussed.

To melt is not enough: Retention of volatile species through internal processing in icy bodies

NASA Astrophysics Data System (ADS)

Sarid, G.; Stewart-Mukhopadhyay, S.

2014-07-01

The outer Solar System hosts a vast population of small icy bodies, considered to be primitive remnants from the planet-formation epoch. Early thermal and collisional processes affected such planetesimals to varying degrees depending on the time scale and dynamics of early planet growth. Recent observations have revealed that many large (>˜1000 km in diameter) transneptunian objects (TNOs) exhibit features of crystalline water ice in their surface spectra [1], as well as spectral features of more volatile ices, such as methane or hydrated ammonia [2]. These telltale observations should be accounted for when considering the alteration history and bulk processing of dwarf planets and their icy progeny. We will discuss preliminary calculations of early evolution scenarios for small icy-rocky bodies formed beyond the water-ice snow line. Such objects should also contain non-negligible fractions of pre-organic volatile compounds. The volatile composition and interior structure of these objects may change considerably due to internal heating and/or collisional modification prior to settling in their current (relatively quiescent) dynamical niches. Our initial model for the objects in question is that of a porous aggregate of various volatile compounds (as ices or trapped gases) and refractory silicate-metal solid grains, comprising the bulk matrix [3]. Chemical compositions for these objects are taken from existing simulations of chemical and dynamical evolution of disk material [4]. The key volatile species (e.g., H_2O, CO, CO_2, NH_3, CH_4, and CH_3OH) are also the most commonly observed in comets [5], which are remnants of such an early planetesimal population. Thermal and chemical internal evolution is examined self-consistently, as the abundances and locations of all species evolve, and we record mass ratios, temperatures, pressures, and porosity variations. The presence of volatile species in the interior can affect the overall heat balance and accompanied phase transitions [6,7]. Another important factor involving volatiles, mostly water ice, is the effect of shock- induced melting and vaporization on the fragmentation and flow regimes within the body, during massive collision events [8]. To explore the effects of collisions on the internal distributions of volatiles, we conduct 3D numerical simulations of collisions between porous icy bodies using the CTH shock-physics code [9]. The spatially heterogeneous effects of shock-induced heating, pore compaction, and bulk brecciation and redistribution of materials are used to estimate the post-impact re-equilibration of internal volatiles following collisions between similarly-sized bodies. We follow a long-term thermal evolution calculation (> 700 Myr), through the bulk alteration of temperature, porosity and composition for icy dwarf planets (>1000 km in diameter). Some initial configurations result in a complex, differentiated structure, where the deep interior holds a few percent of water melt fraction, while there are shallower layers that can retain conditions for volatile-ice preservation (CO_2 and HCN, for this specific model). There exists a distinct separation between the warmer interior, which is much more compacted and hydrous, and the colder exterior, which is much more porous and stratified. If an evolved object, such as this, is subject to a massive collision, the effects of partial melting and porosity quenching may actually serve to trap more volatile species. We show that for massive collisions of icy bodies, the effect of melting may be grossly over-estimated, if extrapolated from that of cratering events. Interestingly, oblique impacts (> 45 deg) will result in less than half of the volume experiencing pressures corresponding to water-ice melting. This means that the deep interior will not necessarily experience extreme alteration. Such an effect could even be more pronounced for porous or partially-differentiated objects. We focus on understanding the effects of different collision regimes (e.g., merging, disruption, hit-and-run, and graze-and-merge) on early volatile preservation. These regimes include potential moon-forming collisions between large TNOs. In the future, such results can be used to estimate the cumulative effects of multiple impacts. For that purpose, we need to understand the survival of water and more volatile species, as a function of their initial phases, objects' size and density (porosity), and the relative timing of collisional and thermo-chemical evolution.

Neoproterozoic, Paleozoic, and Mesozoic granitoid magmatism in the Qinling Orogen, China: Constraints on orogenic process

NASA Astrophysics Data System (ADS)

Wang, Xiaoxia; Wang, Tao; Zhang, Chengli

2013-08-01

The Qinling Orogen is one of the main orogenic belts in Asia and is characterized by multi-stage orogenic processes and the development of voluminous magmatic intrusions. The results of zircon U-Pb dating indicate that granitoid magmatism in the Qinling Orogen mainly occurred in four distinct periods: the Neoproterozoic (979-711 Ma), Paleozoic (507-400 Ma), and Early (252-185 Ma) and Late (158-100 Ma) Mesozoic. The Neoproterozoic granitic magmatism in the Qinling Orogen is represented by strongly deformed S-type granites emplaced at 979-911 Ma, weakly deformed I-type granites at 894-815 Ma, and A-type granites at 759-711 Ma. They can be interpreted as the products of respectively syn-collisional, post-collisional and extensional setting, in response to the assembly and breakup of the Rodinia supercontinent. The Paleozoic magmatism can be temporally classified into three stages of 507-470 Ma, 460-422 Ma and ˜415-400 Ma. They were genetically related to the subduction of the Shangdan Ocean and subsequent collision of the southern North China Block and the South Qinling Belt. The 507-470 Ma magmatism is spatially and temporally related to ultrahigh-pressure metamorphism in the studied area. The 460-422 Ma magmatism with an extensive development in the North Qinling Belt is characterized by I-type granitoids and originated from the lower crust with the involvement of mantle-derived magma in a collisional setting. The magmatism with the formation age of ˜415-400 Ma only occurred in the middle part of the North Qinling Belt and is dominated by I-type granitoid intrusions, and probably formed in the late-stage of a collisional setting. Early Mesozoic magmatism in the study area occurred between 252 and 185 Ma, with the cluster in 225-200 Ma. It took place predominantly in the western part of the South Qinling Belt. The 250-240 Ma I-type granitoids are of small volume and show high Sr/Y ratios, and may have been formed in a continental arc setting related to subduction of the Mianlue Ocean between the South Qinling Belt and the South China Block. Voluminous late-stage (225-185 Ma) magmatism evolved from early I-type to later I-A-type granitoids associated with contemporaneous lamprophyres, representative of a transition from syn- to post-collisional setting in response to the collision between the North China and the South China blocks. Late Mesozoic (158-100 Ma) granitoids, located in the southern margin of the North China Block and the eastern part of the North Qinling Belt, are characterized by I-type, I- to A-type, and A-type granitoids that were emplaced in a post-orogenic or intraplate setting. The first three of the four periods of magmatism were associated with three important orogenic processes and the last one with intracontinental process. These suggest that the tectonic evolution of the Qinling Orogen is very complicated.

The importance of momentum transfer in collision-induced breakups in low Earth orbit

NASA Technical Reports Server (NTRS)

Reynolds, Robert C.; Lillie, Brian J.

1991-01-01

Although there is adequate information on larger objects in low Earth orbit, specifically those objects larger than about 10 cm in diameter, there is little direct information on objects from this size down to 1 mm. Yet, this is the sized regime where objects acting as projectiles represent the ability to seriously damage or destroy a functioning spacecraft if they collide with it. The observed consequences of known collisional breakups in orbit indicates no significant momentum transfer in the resulting debris cloud. The position taken in this paper is that this is an observational selection effect: what is seen in these events is an explosion-like breakup of the target structure arising from shock waves introduced into the structure by the collision, but one that occurs significantly after the collision processes are completed; the collision cloud, in which there is momentum transfer, consists of small, unobserved fragments. Preliminary computations of the contribution of one known collisional breakup, Solwind at 500 km in 1985, and Cosmos 1275 in 1981, assume no momentum transfer on breakup and indicate that these two events are the dominant contributors to the current millimeter and centimeter population. A different story would emerge if momentum transfer was taken into account. The topics covered include: (1) observation of on-orbit collisional breakups; (2) a model for momentum transfer; and (3) velocity space representation of breakup clouds.

Transition in Electron Physics of Magnetic Reconnection in Weakly Collisional Plasma

NASA Astrophysics Data System (ADS)

Le, A.; Roytershteyn, V.; Karimabadi, H.; Daughton, W. S.; Egedal, J.; Forest, C.

2013-12-01

Using self-consistent fully kinetic simulations with a Monte-Carlo treatment of the Coulomb collision operator, we explore the transition between collisional and kinetic regimes of magnetic reconnection in high-Lundquist-number current sheets. Recent research in collisionless reconnection has shown that electron kinetic physics plays a key role in the evolution. Large-scale electron current sheets may form, leading to secondary island formation and turbulent flux rope interactions in 3D. The new collisional simulations demonstrate how increasing collisionality modifies or eliminates these electron structures in the kinetic regimes. Additional basic questions that are addressed include how the reconnection rate and the release of magnetic energy into electrons and ions vary with collisionality. The numerical study provides insight into reconnection in dense regions of the solar corona, the solar wind, and upcoming laboratory experiments at MRX (Princeton) and MPDX (UW-Madison). The implications of these results for studies of turbulence dissipation in weakly collisional plasmas are discussed.

Measurements of long-range enhanced collisional velocity drag through plasma wave damping

NASA Astrophysics Data System (ADS)

Affolter, M.; Anderegg, F.; Dubin, D. H. E.; Driscoll, C. F.

2018-05-01

We present damping measurements of axial plasma waves in magnetized, multispecies ion plasmas. At high temperatures T ≳ 10-2 eV, collisionless Landau damping dominates, whereas, at lower temperatures T ≲ 10-2 eV, the damping arises from interspecies collisional drag, which is dependent on the plasma composition and scales roughly as T-3 /2 . This drag damping is proportional to the rate of parallel collisional slowing, and is found to exceed classical predictions of collisional drag damping by as much as an order of magnitude, but agrees with a new collision theory that includes long-range collisions. Centrifugal mass separation and collisional locking of the species occur at ultra-low temperatures T ≲ 10-3 eV, which reduce the drag damping from the T-3 /2 collisional scaling. These mechanisms are investigated by measuring the damping of higher frequency axial modes, and by measuring the damping in plasmas with a non-equilibrium species profile.

Visible and infrared investigations of planet-crossing asteroids and outer solar system objects

NASA Technical Reports Server (NTRS)

Tholen, David J.

1991-01-01

The project is supporting lightcurve photometry, colorimetry, thermal radiometry, and astrometry of selected asteroids. Targets include the planet-crossing population, particularly Earth approachers, which are believed to be the immediate source of terrestrial meteorites, future spacecraft targets, and those objects in the outer belt, primarily the Hilda and Trojan populations, that are dynamically isolated from the main asteroid belt. Goals include the determination of population statistics for the planet-crossing objects, the characterization of spacecraft targets to assist in encounter planning and subsequent interpretation of the data, a comparison of the collisional evolution of dynamically isolated Hilda and Trojan populations with the main belt, and the determination of the mechanism driving the activity of the distant object 2060 Chiron.

On the populating mechanisms of the autoionising states of Al III ions produced in a Penning ionisation discharge

NASA Technical Reports Server (NTRS)

Finkenthal, M.; Littman, A.; Stutman, D.; Bhatia, A. K.

1989-01-01

Spectra emitted by Al II and Al III in the 100-1900-A range from a Penning ionization discharge (PID) have been analyzed in order to study the populating mechanisms of the autoionizing levels of the Al III ion. Electron temperature and density estimates and Al III line intensities obtained using a collisional-radiative model are found to differ from those obtained experimentally, implying that the autoionizing levels of the Na I-like ion may be populated, in the PID plasma, by the inner-shell ionization of excited Mg I-like ions. It is suggested that such autoionizing lines could be used to search for populations inversions in the soft X-ray domain.

FAC: Flexible Atomic Code

NASA Astrophysics Data System (ADS)

Gu, Ming Feng

2018-02-01

FAC calculates various atomic radiative and collisional processes, including radiative transition rates, collisional excitation and ionization by electron impact, energy levels, photoionization, and autoionization, and their inverse processes radiative recombination and dielectronic capture. The package also includes a collisional radiative model to construct synthetic spectra for plasmas under different physical conditions.

Kuiper Belt Dust Grains as a Source of Interplanetary Dust Particles

NASA Technical Reports Server (NTRS)

Liou, Jer-Chyi; Zook, Herbert A.; Dermott, Stanley F.

1996-01-01

The recent discovery of the so-called Kuiper belt objects has prompted the idea that these objects produce dust grains that may contribute significantly to the interplanetary dust population. In this paper, the orbital evolution of dust grains, of diameters 1 to 9 microns, that originate in the region of the Kuiper belt is studied by means of direct numerical integration. Gravitational forces of the Sun and planets, solar radiation pressure, as well as Poynting-Robertson drag and solar wind drag are included. The interactions between charged dust grains and solar magnetic field are not considered in the model. Because of the effects of drag forces, small dust grains will spiral toward the Sun once they are released from their large parent bodies. This motion leads dust grains to pass by planets as well as encounter numerous mean motion resonances associated with planets. Our results show that about 80% of the Kuiper belt grains are ejected from the Solar System by the giant planets, while the remaining 20% of the grains evolve all the way to the Sun. Surprisingly, the latter dust grains have small orbital eccentricities and inclinations when they cross the orbit of the Earth. This makes them behave more like asteroidal than cometary-type dust particles. This also enhances their chances of being captured by the Earth and makes them a possible source of the collected interplanetary dust particles; in particular, they represent a possible source that brings primitive/organic materials from the outer Solar System to the Earth. When collisions with interstellar dust grains are considered, however, Kuiper belt dust grains around 9 microns appear likely to be collisionally shattered before they can evolve toward the inner part of the Solar System. The collision destruction can be applied to Kuiper belt grains up to about 50 microns. Therefore, Kuiper belt dust grains within this range may not be a significant part of the interplanetary dust complex in the inner Solar System.

The effect of the inductive electric field on ion poloidal rotation in all collisionality regimes for the primary ions in tokamaks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pan Chengkang; Wang Shaojie; Institute of Plasma Physics, Chinese Academy of Sciences, Hefei, 230031

2007-11-15

The expression for the poloidal rotation velocity of the primary ions that is caused by the parallel inductive electric field in tokamaks and valid in all collisionality regimes is derived via the Hirshman-Sigmar moment approach. Also the expression of the collisional impurity ions poloidal rotation velocity that is caused by the parallel inductive electric field in tokamaks is derived. The poloidal rotation velocities of the primary ions and the impurity ions are sensitive to the primary ion collisionality parameter and the impurity strength parameter. The poloidal rotation velocities of the primary ions and the impurity ions decrease with the primarymore » ion collisionality parameter and decrease with the impurity strength parameter.« less

The linear tearing instability in three dimensional, toroidal gyro-kinetic simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hornsby, W. A., E-mail: william.hornsby@ipp.mpg.de; Migliano, P.; Buchholz, R.

2015-02-15

Linear gyro-kinetic simulations of the classical tearing mode in three-dimensional toroidal geometry were performed using the global gyro-kinetic turbulence code, GKW. The results were benchmarked against a cylindrical ideal MHD and analytical theory calculations. The stability, growth rate, and frequency of the mode were investigated by varying the current profile, collisionality, and the pressure gradients. Both collisionless and semi-collisional tearing modes were found with a smooth transition between the two. A residual, finite, rotation frequency of the mode even in the absence of a pressure gradient is observed, which is attributed to toroidal finite Larmor-radius effects. When a pressure gradientmore » is present at low collisionality, the mode rotates at the expected electron diamagnetic frequency. However, the island rotation reverses direction at high collisionality. The growth rate is found to follow a η{sup 1∕7} scaling with collisional resistivity in the semi-collisional regime, closely following the semi-collisional scaling found by Fitzpatrick. The stability of the mode closely follows the stability analysis as performed by Hastie et al. using the same current and safety factor profiles but for cylindrical geometry, however, here a modification due to toroidal coupling and pressure effects is seen.« less

1I/‘Oumuamua as a Tidal Disruption Fragment from a Binary Star System

NASA Astrophysics Data System (ADS)

Ćuk, Matija

2018-01-01

1I/‘Oumuamua is the first known interstellar small body, probably being only about 100 m in size. Against expectations based on comets, ‘Oumuamua does not show any activity and has a very elongated figure, and it also exhibits undamped rotational tumbling. In contrast, ‘Oumuamua’s trajectory indicates that it was moving with the local stars, as expected from a low-velocity ejection from a relatively nearby system. Here, I assume that ‘Oumuamua is typical of 100 m interstellar objects and speculate on its origins. I find that giant planets are relatively inefficient at ejecting small bodies from inner solar systems of main-sequence stars, and that binary systems offer a much better opportunity for ejections of non-volatile bodies. I also conclude that ‘Oumuamua is not a member of a collisional population, which could explain its dramatic difference from small asteroids. I observe that 100 m small bodies are expected to carry little mass in realistic collisional populations and that occasional events, when whole planets are disrupted in catastrophic encounters, may dominate the interstellar population of 100 m fragments. Unlike the Sun or Jupiter, red dwarf stars are very dense and are capable of thoroughly tidally disrupting terrestrial planets. I conclude that ‘Oumuamua may have originated as a fragment from a planet that was tidally disrupted and then ejected by a dense member of a binary system, which could explain its peculiarities.

Population mechanisms for the He(+) n = 3 levels determined from measurements of the solar 1640 A emission

NASA Technical Reports Server (NTRS)

Seely, J. F.; Feldman, U.

1985-01-01

The 1640 A line profile is analyzed using solar data obtained by the NRL slit spectrograph on Skylab. Data from coronal hole regions, quiet sun regions, active regions, prominence regions, and flare regions are presented. The relative densities of 3s, 3p, and 3d levels are determined from the data, and the dominant population mechanisms for these levels are inferred using a rate equation model for the He(+) ion. The relative importance of collisional excitation, radiative recombination, and photoexcitation is determined for each of the solar regions.

Emergence of kinetic behavior in streaming ultracold neutral plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

McQuillen, P.; Castro, J.; Bradshaw, S. J.

2015-04-15

We create streaming ultracold neutral plasmas by tailoring the photoionizing laser beam that creates the plasma. By varying the electron temperature, we control the relative velocity of the streaming populations, and, in conjunction with variation of the plasma density, this controls the ion collisionality of the colliding streams. Laser-induced fluorescence is used to map the spatially resolved density and velocity distribution function for the ions. We identify the lack of local thermal equilibrium and distinct populations of interpenetrating, counter-streaming ions as signatures of kinetic behavior. Experimental data are compared with results from a one-dimensional, two-fluid numerical simulation.

Study of Opacity Effects on Emission Lines at EXTRAP T2R RFP

NASA Astrophysics Data System (ADS)

Stancalie, Viorica; Rachlew, Elisabeth

We have investigated the influence of opacity on hydrogen (H-α and Ly-β) and Li-like oxygen emission lines from the EXTRAP T2R reversed field pinch. We used the Atomic Data Analysis System (AzDAS) based on the escape factor approximation for radiative transfer to calculate metastable and excited population densities via a collisional-radiative model. Population escape factor, emergent escape factor and modified line profiles are plotted vs. optical depth. The simulated emission line ratios in the density/temperature plane are in good agreement with experimental data for electron density and temperature measurements.

Neoclassical transport caused by collisionless scattering across an asymmetric separatrix.

PubMed

Dubin, Daniel H E; Driscoll, C F; Tsidulko, Yu A

2010-10-29

Plasma loss due to apparatus asymmetries is a ubiquitous phenomenon in magnetic plasma confinement. When the plasma equilibrium has locally trapped particle populations partitioned by a separatrix from one another and from passing particles, the asymmetry transport is enhanced. The trapped and passing particle populations react differently to the asymmetries, leading to the standard 1/ν and sqrt[ν] transport regimes of superbanana orbit theory as particles collisionally scatter from one orbit type to another. However, when the separatrix is itself asymmetric, particles can collisionlessly transit from trapped to passing and back, leading to enhanced transport.

Polarization Spectroscopy and Collisions in NaK

NASA Astrophysics Data System (ADS)

Wolfe, C. M.; Ashman, S.; Huennekens, J.; Beser, B.; Bai, J.; Lyyra, A. M.

2009-05-01

We report current work to study transfer of population and orientation in collisions of NaK molecules with argon and potassium atoms using polarization labeling (PL) and laser-induced fluorescence (LIF) spectroscopy. In the PL experiment, a circularly polarized pump laser excites a specific NaK A^1&+circ;(v=16, J) <- X^1&+circ;(v=0, J±1) transition, creating an orientation (non-uniform MJ level distribution) in both levels. The linear polarized probe laser is scanned over various 3^1π(v=8, J' ±1) <- A^1&+circ;(v=16, J') transitions. The probe laser passes through a crossed linear polarizer before detection, and signal is recorded if the probe laser polarization has been modified by the vapor (which occurs when it comes into resonance with an oriented level). In addition to strong direct transitions (J' = J), we also observe weak collisional satellite lines (J' = J±n with n = 1, 2, 3, ...) indicating that orientation is transferred to adjacent rotational levels during a collision. An LIF experiment (with linear polarized pump and probe beams) gives information on the collisional transfer of population. From these data, cross sections for both processes can be determined. We experimentally distinguish collisions of NaK with argon atoms from collisions with alkali atoms.

Spectroscopic Non-LTE Modeling of Highly Charged Gold Plasma

NASA Astrophysics Data System (ADS)

Dasgupta, A.; Ouart, N. D.; Giuliani, J. L.; Obenschain, S. P.; Clark, R. W.; Aglitskiy, Y.

2013-10-01

An X-ray spectrometer is under development at the Naval Research Laboratory (NRL) to investigate emissions from gold targets irradiated by the NIKE KrF facility. This effort is in support of the indirect drive campaign on the National Ignition Facility (NIF). To analyze and interpret the NIKE experimental spectra, we are theoretically exploring line emissions from a gold plasma in the M-band, i.e., 1.5 to 3.5 keV. We employ a detailed Non-LTE atomic model for ions near Ni-like gold by including an adequate number of configurations to obtain spectroscopic details in this range. The atomic states are coupled both collisionally and radiatively, including all dominant atomic processes that have significant contributions to the ionization and emitted synthetic spectra. In particular, we will investigate the effect of dielectronic recombination, which can have a dominant effect on level populations for highly ionized high Z plasmas. Since the radiation field can affect level populations through photoionization and photoexcitation, our collisional-radiative model will include non-local radiation transport. The line shapes of the strong overlapping lines will be resolved by a multifrequency radiation transport method. Synthetic spectra with radiation transport, including resonant photo-pumping, will be generated for realistic densities and temperatures to compare with the NIKE data. Work supported by DOE/NNSA.

Correction of the near threshold behavior of electron collisional excitation cross-sections in the plane-wave Born approximation

DOE PAGES

Kilcrease, D. P.; Brookes, S.

2013-08-19

The modeling of NLTE plasmas requires the solution of population rate equations to determine the populations of the various atomic levels relevant to a particular problem. The equations require many cross sections for excitation, de-excitation, ionization and recombination. Additionally, a simple and computational fast way to calculate electron collisional excitation cross-sections for ions is by using the plane-wave Born approximation. This is essentially a high-energy approximation and the cross section suffers from the unphysical problem of going to zero near threshold. Various remedies for this problem have been employed with varying degrees of success. We present a correction procedure formore » the Born cross-sections that employs the Elwert–Sommerfeld factor to correct for the use of plane waves instead of Coulomb waves in an attempt to produce a cross-section similar to that from using the more time consuming Coulomb Born approximation. We compare this new approximation with other, often employed correction procedures. Furthermore, we also look at some further modifications to our Born Elwert procedure and its combination with Y.K. Kim's correction of the Coulomb Born approximation for singly charged ions that more accurately approximate convergent close coupling calculations.« less

Collisional damping rates for plasma waves

NASA Astrophysics Data System (ADS)

Tigik, S. F.; Ziebell, L. F.; Yoon, P. H.

2016-06-01

The distinction between the plasma dynamics dominated by collisional transport versus collective processes has never been rigorously addressed until recently. A recent paper [P. H. Yoon et al., Phys. Rev. E 93, 033203 (2016)] formulates for the first time, a unified kinetic theory in which collective processes and collisional dynamics are systematically incorporated from first principles. One of the outcomes of such a formalism is the rigorous derivation of collisional damping rates for Langmuir and ion-acoustic waves, which can be contrasted to the heuristic customary approach. However, the results are given only in formal mathematical expressions. The present brief communication numerically evaluates the rigorous collisional damping rates by considering the case of plasma particles with Maxwellian velocity distribution function so as to assess the consequence of the rigorous formalism in a quantitative manner. Comparison with the heuristic ("Spitzer") formula shows that the accurate damping rates are much lower in magnitude than the conventional expression, which implies that the traditional approach over-estimates the importance of attenuation of plasma waves by collisional relaxation process. Such a finding may have a wide applicability ranging from laboratory to space and astrophysical plasmas.

Can the Yarkovsky effect significantly influence the main-belt size distribution?

NASA Astrophysics Data System (ADS)

O'Brien, D. P.; Greenberg, R.

2001-11-01

It has been proposed that the size distribution of main-belt asteroids may be significantly modified by the Yarkovsky effect---a size-dependent radiation force which can sweep asteroids into resonances and out of the main belt. Bell [1] suggested that this effect could deplete the population of asteroids smaller than ~10 m by at least an order of magnitude, resulting in the lack of small craters observed on Eros. Others have hypothesized that the same effect could explain the steepness of the crater distribution on Gaspra [2]. We have explicitly included Yarkovsky removal in a numerical collisional evolution model. The algorithm uses recent calculations of the expected removal rates of different sized bodies from the main belt (David Vokrouhlicky, personal communication). We find that the rate of removal of bodies from the main belt by the Yarkovsky effect may be within an order of magnitude of the rate of collisional destruction for asteroids ~10 m in diameter, and negligible for larger or smaller asteroids. When Yarkovsky removal is incorporated into our numerical collisional evolution model, the numbers of bodies ~10 m in diameter is reduced by ~10-20%, and a wave propagates up the size distribution increasing the number of bodies ~300 m by ~10%. This `waviness' could conceivably be detected in the cratering records on asteroids. However, the uncertainties in crater counts on Ida, Gaspra, Malthide, and Eros are >10% for diameters >100 m (i. e. the craters made by impactors >10 m in diameter). Contrary to the earlier hypothesis, Yarkovsky removal of small asteroids cannot have substantially affected the overall slopes of the crater populations on these asteroids. Moreover, Yarkovsky removal cannot explain the lack of small (<10 m) craters on Eros, because the corresponding impactors (<1 m) are unaffected by the Yarkovsky effect. [1] Bell, J. F. (2001). LPSC XXXII abstract no. 1964. [2] Hartmann, W. K. and E. V. Ryan (1996). DPS 28, abstract no. 10.35.

Distinct developmental genetic mechanisms underlie convergently evolved tooth gain in sticklebacks

PubMed Central

Ellis, Nicholas A.; Glazer, Andrew M.; Donde, Nikunj N.; Cleves, Phillip A.; Agoglia, Rachel M.; Miller, Craig T.

2015-01-01

Teeth are a classic model system of organogenesis, as repeated and reciprocal epithelial and mesenchymal interactions pattern placode formation and outgrowth. Less is known about the developmental and genetic bases of tooth formation and replacement in polyphyodonts, which are vertebrates with continual tooth replacement. Here, we leverage natural variation in the threespine stickleback fish Gasterosteus aculeatus to investigate the genetic basis of tooth development and replacement. We find that two derived freshwater stickleback populations have both convergently evolved more ventral pharyngeal teeth through heritable genetic changes. In both populations, evolved tooth gain manifests late in development. Using pulse-chase vital dye labeling to mark newly forming teeth in adult fish, we find that both high-toothed freshwater populations have accelerated tooth replacement rates relative to low-toothed ancestral marine fish. Despite the similar evolved phenotype of more teeth and an accelerated adult replacement rate, the timing of tooth number divergence and the spatial patterns of newly formed adult teeth are different in the two populations, suggesting distinct developmental mechanisms. Using genome-wide linkage mapping in marine-freshwater F2 genetic crosses, we find that the genetic basis of evolved tooth gain in the two freshwater populations is largely distinct. Together, our results support a model whereby increased tooth number and an accelerated tooth replacement rate have evolved convergently in two independently derived freshwater stickleback populations using largely distinct developmental and genetic mechanisms. PMID:26062935

Changes of scaling relationships in an evolving population: The example of "sedimentary" stylolites

NASA Astrophysics Data System (ADS)

Peacock, D. C. P.; Korneva, I.; Nixon, C. W.; Rotevatn, A.

2017-03-01

Bed-parallel (;sedimentary;) stylolites are used as an example of a population that evolves by the addition of new components, their growth and their merger. It is shown that this style of growth controls the changes in the scaling relationships of the population. Stylolites tend to evolve in carbonate rocks through time, for example by compaction during progressive burial. The evolution of a population of stylolites, and their likely effects on porosity, are demonstrated using simple numerical models. Starting with a power-law distribution, the adding of new stylolites, the increase in their amplitudes and their merger decrease the slope of magnitude versus cumulative frequency of the population. The population changes to a non-power-law distribution as smaller stylolites merge to form larger stylolites. The results suggest that other populations can be forward- or backward-modelled, such as fault lengths, which also evolve by the addition of components, their growth and merger. Consideration of the ways in which populations change improves understanding of scaling relationships and vice versa, and would assist in the management of geofluid reservoirs.

Collisional evolution - an analytical study for the non steady-state mass distribution.

NASA Astrophysics Data System (ADS)

Vieira Martins, R.

1999-05-01

To study the collisional evolution of asteroidal groups one can use an analytical solution for the self-similar collision cascades. This solution is suitable to study the steady-state mass distribution of the collisional fragmentation. However, out of the steady-state conditions, this solution is not satisfactory for some values of the collisional parameters. In fact, for some values for the exponent of the mass distribution power law of an asteroidal group and its relation to the exponent of the function which describes "how rocks break" the author arrives at singular points for the equation which describes the collisional evolution. These singularities appear since some approximations are usually made in the laborious evaluation of many integrals that appear in the analytical calculations. They concern the cutoff for the smallest and the largest bodies. These singularities set some restrictions to the study of the analytical solution for the collisional equation. To overcome these singularities the author performed an algebraic computation considering the smallest and the largest bodies and he obtained the analytical expressions for the integrals that describe the collisional evolution without restriction on the parameters. However, the new distribution is more sensitive to the values of the collisional parameters. In particular the steady-state solution for the differential mass distribution has exponents slightly different from 11/6 for the usual parameters in the asteroid belt. The sensitivity of this distribution with respect to the parameters is analyzed for the usual values in the asteroidal groups. With an expression for the mass distribution without singularities, one can evaluate also its time evolution. The author arrives at an analytical expression given by a power series of terms constituted by a small parameter multiplied by the mass to an exponent, which depends on the initial power law distribution. This expression is a formal solution for the equation which describes the collisional evolution.

Drift and separation in collisionality gradients

DOE PAGES

Ochs, I. E.; Rax, J. M.; Gueroult, R.; ...

2017-07-20

Here we identify a single-particle drift resulting from collisional interactions with a background species, in the presence of a collisionality gradient and background net flow. We also analyze this drift in different limits, showing how it reduces to the well known impurity pinch for high-Zi impurities. We find that in the low-temperature, singly ionized limit, the magnitude of the drift becomes mass-dependent and energy-dependent. Furthermore, by solving for the resulting diffusion-advection motion, we propose a mass-separation scheme that takes advantage of this drift, and analyze the separative capability as a function of collisionally dissipated energy.

Drift and separation in collisionality gradients

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ochs, I. E.; Rax, J. M.; Gueroult, R.

Here we identify a single-particle drift resulting from collisional interactions with a background species, in the presence of a collisionality gradient and background net flow. We also analyze this drift in different limits, showing how it reduces to the well known impurity pinch for high-Zi impurities. We find that in the low-temperature, singly ionized limit, the magnitude of the drift becomes mass-dependent and energy-dependent. Furthermore, by solving for the resulting diffusion-advection motion, we propose a mass-separation scheme that takes advantage of this drift, and analyze the separative capability as a function of collisionally dissipated energy.

Spatiotemporal Evolution of Runaway Electron Momentum Distributions in Tokamaks

DOE PAGES

Paz-Soldan, Carlos; Cooper, Christopher M.; Aleynikov, Pavel; ...

2017-06-22

Novel spatial, temporal, and energetically resolved measurements of bremsstrahlung hard-x-ray (HXR) emission from runaway electron (RE) populations in tokamaks reveal nonmonotonic RE distribution functions whose properties depend on the interplay of electric field acceleration with collisional and synchrotron damping. Measurements are consistent with theoretical predictions of momentum-space attractors that accumulate runaway electrons. RE distribution functions are measured to shift to a higher energy when the synchrotron force is reduced by decreasing the toroidal magnetic field strength. Increasing the collisional damping by increasing the electron density (at a fixed magnetic and electric field) reduces the energy of the nonmonotonic feature andmore » reduces the HXR growth rate at all energies. Higher-energy HXR growth rates extrapolate to zero at the expected threshold electric field for RE sustainment, while low-energy REs are anomalously lost. The compilation ofHXR emission from different sight lines into the plasma yields energy and pitch-angle-resolved RE distributions and demonstrates increasing pitch-angle and radial gradients with energy.« less

The missing large impact craters on Ceres

PubMed Central

Marchi, S.; Ermakov, A. I.; Raymond, C. A.; Fu, R. R.; O'Brien, D. P.; Bland, M. T.; Ammannito, E.; De Sanctis, M. C.; Bowling, T.; Schenk, P.; Scully, J. E. C.; Buczkowski, D. L.; Williams, D. A.; Hiesinger, H.; Russell, C. T.

2016-01-01

Asteroids provide fundamental clues to the formation and evolution of planetesimals. Collisional models based on the depletion of the primordial main belt of asteroids predict 10–15 craters >400 km should have formed on Ceres, the largest object between Mars and Jupiter, over the last 4.55 Gyr. Likewise, an extrapolation from the asteroid Vesta would require at least 6–7 such basins. However, Ceres' surface appears devoid of impact craters >∼280 km. Here, we show a significant depletion of cerean craters down to 100–150 km in diameter. The overall scarcity of recognizable large craters is incompatible with collisional models, even in the case of a late implantation of Ceres in the main belt, a possibility raised by the presence of ammoniated phyllosilicates. Our results indicate that a significant population of large craters has been obliterated, implying that long-wavelength topography viscously relaxed or that Ceres experienced protracted widespread resurfacing. PMID:27459197

A collisional-radiative model for low-pressure weakly magnetized Ar plasmas

NASA Astrophysics Data System (ADS)

Zhu, Xi-Ming; Tsankov, Tsanko; Czarnetzki, Uwe; Marchuk, Oleksandr

2016-09-01

Collisional-radiative (CR) models are widely investigated in plasma physics for describing the kinetics of reactive species and for optical emission spectroscopy. This work reports a new Ar CR model used in low-pressure (0.01-10 Pa) weakly magnetized (<0.1 Tesla) plasmas, including ECR, helicon, and NLD discharges. In this model 108 realistic levels are individually studied, i.e. 51 lowest levels of the Ar atom and 57 lowest levels of the Ar ion. We abandon the concept of an ``effective level'' usually adopted in previous models for glow discharges. Only in this way the model can correctly predict the non-equilibrium population distribution of close energy levels. In addition to studying atomic metastable and radiative levels, this model describes the kinetic processes of ionic metastable and radiative levels in detail for the first time. This is important for investigation of plasma-surface interaction and for optical diagnostics using atomic and ionic line-ratios. This model could also be used for studying Ar impurities in tokamaks and astrophysical plasmas.

Environmental Noise, Genetic Diversity and the Evolution of Evolvability and Robustness in Model Gene Networks

PubMed Central

Steiner, Christopher F.

2012-01-01

The ability of organisms to adapt and persist in the face of environmental change is accepted as a fundamental feature of natural systems. More contentious is whether the capacity of organisms to adapt (or “evolvability”) can itself evolve and the mechanisms underlying such responses. Using model gene networks, I provide evidence that evolvability emerges more readily when populations experience positively autocorrelated environmental noise (red noise) compared to populations in stable or randomly varying (white noise) environments. Evolvability was correlated with increasing genetic robustness to effects on network viability and decreasing robustness to effects on phenotypic expression; populations whose networks displayed greater viability robustness and lower phenotypic robustness produced more additive genetic variation and adapted more rapidly in novel environments. Patterns of selection for robustness varied antagonistically with epistatic effects of mutations on viability and phenotypic expression, suggesting that trade-offs between these properties may constrain their evolutionary responses. Evolution of evolvability and robustness was stronger in sexual populations compared to asexual populations indicating that enhanced genetic variation under fluctuating selection combined with recombination load is a primary driver of the emergence of evolvability. These results provide insight into the mechanisms potentially underlying rapid adaptation as well as the environmental conditions that drive the evolution of genetic interactions. PMID:23284934

Collateral damage: rapid exposure-induced evolution of pesticide resistance leads to increased susceptibility to parasites.

PubMed

Jansen, Mieke; Stoks, Robby; Coors, Anja; van Doorslaer, Wendy; de Meester, Luc

2011-09-01

Although natural populations may evolve resistance to anthropogenic stressors such as pollutants, this evolved resistance may carry costs. Using an experimental evolution approach, we exposed different Daphnia magna populations in outdoor containers to the carbamate pesticide carbaryl and control conditions, and assessed the resulting populations for both their resistance to carbaryl as well as their susceptibility to infection by the widespread bacterial microparasite Pasteuria ramosa. Our results show that carbaryl selection led to rapid evolution of carbaryl resistance with seemingly no cost when assessed in a benign environment. However, carbaryl-resistant populations were more susceptible to parasite infection than control populations. Exposure to both stressors reveals a synergistic effect on sterilization rate by P. ramosa, but this synergism did not evolve under pesticide selection. Assessing costs of rapid adaptive evolution to anthropogenic stress in a semi-natural context may be crucial to avoid too optimistic predictions for the fitness of the evolving populations. © 2011 The Author(s).

Impurity transport and bulk ion flow in a mixed collisionality stellarator plasma

NASA Astrophysics Data System (ADS)

Newton, S. L.; Helander, P.; Mollén, A.; Smith, H. M.

2017-10-01

The accumulation of impurities in the core of magnetically confined plasmas, resulting from standard collisional transport mechanisms, is a known threat to their performance as fusion energy sources. Whilst the axisymmetric tokamak systems have been shown to benefit from the effect of temperature screening, that is an outward flux of impurities driven by the temperature gradient, impurity accumulation in stellarators was thought to be inevitable, driven robustly by the inward pointing electric field characteristic of hot fusion plasmas. We have shown in Helander et al. (Phys. Rev. Lett., vol. 118, 2017a, 155002) that such screening can in principle also appear in stellarators, in the experimentally relevant mixed collisionality regime, where a highly collisional impurity species is present in a low collisionality bulk plasma. Details of the analytic calculation are presented here, along with the effect of the impurity on the bulk ion flow, which will ultimately affect the bulk contribution to the bootstrap current.

Effects of YORP-induced rotational fission on the small size end of the Main Belt asteroid size distribution

NASA Astrophysics Data System (ADS)

Rossi, Alessandro; Jacobson, S.; Marzari, F.; Scheeres, D.; Davis, D. R.

2013-10-01

From the results of a comprehensive asteroid population evolution model, we conclude that the YORP-induced rotational fission hypothesis has strong repercussions for the small size end of the Main Belt asteroid size frequency distribution. These results are consistent with observed asteroid population statistics. The foundation of this model is the asteroid rotation model of Marzari et al. (2011), which incorporates both the YORP effect and collisional evolution. This work adds to that model the rotational fission hypothesis (i.e. when the rotation rate exceeds a critical value, erosion and binary formation occur). The YORP effect timescale for large asteroids with diameters D > ~6 km is longer than the collision timescale in the Main Belt, thus the frequency of large asteroids is determined by a collisional equilibrium (e.g. Bottke 2005), but for small asteroids with diameters D < ~6 km, the asteroid population evolution model confirms that YORP-induced rotational fission destroys small asteroids more frequently than collisions. Therefore, the frequency of these small asteroids is determined by an equilibrium between the creation of new asteroids out of the impact debris of larger asteroids and the destruction of these asteroids by YORP-induced rotational fission. By introducing a new source of destruction that varies strongly with size, YORP-induced rotational fission alters the slope of the size frequency distribution. Using the outputs of the asteroid population evolution model and a 1-D collision evolution model, we can generate this new size frequency distribution and it matches the change in slope observed by the SKADS survey (Gladman 2009). This agreement is achieved with both an accretional power-law or a truncated “Asteroids were Born Big” size frequency distribution (Weidenschilling 2010, Morbidelli 2009).

PRIMitive Asteroids Spectroscopic Survey - PRIMASS: First Results

NASA Astrophysics Data System (ADS)

de Leon, Julia; Pinilla-Alonso, Noemi; Campins, Humberto; Lorenzi, Vania; Licandro, Javier; Morate, David; Tanga, Paolo; Cellino, Alberto; Delbo, Marco

2015-11-01

NASA OSIRIS-REx and JAXA Hayabusa 2 sample-return missions have targeted two near-Earth asteroids: (101955) Bennu and (162173) 1999 JU3, respectively. These are primitive asteroids that are believed to originate in the inner belt, where five distinct sources have been identified: four primitive collisional families (Polana, Erigone, Sulamitis, and Clarissa), and a population of low-albedo and low-inclination background asteroids. Identifying and characterizing the populations from which these two NEAs might originate will enchance the science return of the two missions.With this main objective in mind, we initiated in 2010 a spectroscopic survey in the visible and the near-infrared to characterize the primitive collisional families in the inner belt and the low-albedo background population. This is the PRIMitive Asteroids Spectroscopic Survey - PRIMASS. So far we have obtained more than 200 spectra using telescopes located at different observatories. PRIMASS uses a variety of ground based facilities. Most of the spectra have been obtained using the 10.4m Gran Telescopio Canarias (GTC), and the 3.6m Telescopio Nazionale Galileo (TNG), both located at the El Roque de los Muchachos Observatory (La Palma, Spain), and the 3.0m NASA Infrared Telescope Facility on Mauna Kea (Hawai, USA).We present the first results from our on-going survey (de Leon et al. 2015; Pinilla-Alonso et al. 2015; Morate et al. 2015), focused on the Polana and the Erigone primitive families, with visible and near-infrared spectra of more than 200 objects, most of them with no previous spectroscopic data. Our survey is already the largest database of primitive asteroids spectra, and we keep obtaining data on the Sulamitis and the Clarissa families, as well as on the background low-albedo population.

Generation of Suprathermal Electrons by Collective Processes in Collisional Plasma

NASA Astrophysics Data System (ADS)

Tigik, S. F.; Ziebell, L. F.; Yoon, P. H.

2017-11-01

The ubiquity of high-energy tails in the charged particle velocity distribution functions (VDFs) observed in space plasmas suggests the existence of an underlying process responsible for taking a fraction of the charged particle population out of thermal equilibrium and redistributing it to suprathermal velocity and energy ranges. The present Letter focuses on a new and fundamental physical explanation for the origin of suprathermal electron velocity distribution function (EVDF) in a collisional plasma. This process involves a newly discovered electrostatic bremsstrahlung (EB) emission that is effective in a plasma in which binary collisions are present. The steady-state EVDF dictated by such a process corresponds to a Maxwellian core plus a quasi-inverse power-law tail, which is a feature commonly observed in many space plasma environments. In order to demonstrate this, the system of self-consistent particle- and wave-kinetic equations are numerically solved with an initially Maxwellian EVDF and Langmuir wave spectral intensity, which is a state that does not reflect the presence of EB process, and hence not in force balance. The EB term subsequently drives the system to a new force-balanced steady state. After a long integration period it is demonstrated that the initial Langmuir fluctuation spectrum is modified, which in turn distorts the initial Maxwellian EVDF into a VDF that resembles the said core-suprathermal VDF. Such a mechanism may thus be operative at the coronal source region, which is characterized by high collisionality.

Three-Dimensional Numerical Simulations of Equatorial Spread F: Results and Observations in the Pacific Sector

NASA Technical Reports Server (NTRS)

Aveiro, H. C.; Hysell, D. L.; Caton, R. G.; Groves, K. M.; Klenzing, J.; Pfaff, R. F.; Stoneback, R.; Heelis, R. A.

2012-01-01

A three-dimensional numerical simulation of plasma density irregularities in the postsunset equatorial F region ionosphere leading to equatorial spread F (ESF) is described. The simulation evolves under realistic background conditions including bottomside plasma shear flow and vertical current. It also incorporates C/NOFS satellite data which partially specify the forcing. A combination of generalized Rayleigh-Taylor instability (GRT) and collisional shear instability (CSI) produces growing waveforms with key features that agree with C/NOFS satellite and ALTAIR radar observations in the Pacific sector, including features such as gross morphology and rates of development. The transient response of CSI is consistent with the observation of bottomside waves with wavelengths close to 30 km, whereas the steady state behavior of the combined instability can account for the 100+ km wavelength waves that predominate in the F region.

Dark soliton past a finite-size obstacle

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bilas, Nicolas; Pavloff, Nicolas

2005-09-15

We consider the collision of a dark soliton with an obstacle in a quasi-one-dimensional Bose condensate. We show that in many respects the soliton behaves as an effective classical particle of mass twice the mass of a bare particle, evolving in an effective potential which is a convolution of the actual potential describing the obstacle. Radiative effects beyond this approximation are also taken into account. The emitted waves are shown to form two counterpropagating wave packets, both moving at the speed of sound. We determine, at leading order, the total amount of radiation emitted during the collision and compute themore » acceleration of the soliton due to the collisional process. It is found that the radiative process is quenched when the velocity of the soliton reaches the velocity of sound in the system.« less

An examination of energy transfers and kinetic mechanisms in argon and in an argon-hydrogen medium excited by an electron beam Application in research on new lasers

NASA Astrophysics Data System (ADS)

Puech, V.

Experimental results on a Ar-H laser pumped by an electron gun are presented, along with a kinetic model of the evolution of states in Ar lasers with additives. Data from trials with the Ar-H laser are provided to confirm model predictions of the electron energy transfer. The electron densities and temperatures evolving on a nanosecond scale in the laser are quantified. A solution is found for the Boltzmann equation for the collisional processes characterizing the electron distribution of interactions between the pumping electrons and the various excited molecular states. The electron distribution function is assumed to be Maxwellian, and the distribution is shown to converge within a few picoseconds when the excitation is above the ionization energy.

The Creation of Haumea's Collisional Family

NASA Astrophysics Data System (ADS)

Schlichting, Hilke E.; Sari, Re'em

2009-08-01

Recently, the first collisional family was discovered in the Kuiper Belt. The parent body of this family, Haumea, is one of the largest objects in the Kuiper Belt and is orbited by two satellites. It has been proposed that the Haumea family was created from dispersed fragments that resulted from a giant impact. This proposed origin of the Haumea family is however in conflict with the observed velocity dispersion between the family members (~ 140 m s-1) which is significantly less than the escape velocity from Haumea's surface (~ 900 m s-1). In this paper we propose a different formation scenario for Haumea's collisional family. In our scenario the family members are ejected while in orbit around Haumea. This scenario, therefore, naturally gives rise to a lower velocity dispersion among the family members than expected from direct ejection from Haumea's surface. In our scenario Haumea's giant impact forms a single moon that tidally evolves outward until it suffers a destructive collision from which the family is created. We show that this formation scenario yields a velocity dispersion of ~ 190 m s-1 among the family members which is in good agreement with the observations. We discuss an alternative scenario that consists of the formation and tidal evolution of several satellites that are ejected by collisions with unbound Kuiper Belt objects. However, the formation of the Haumea family in this latter way is difficult to reconcile with the large abundance of Kuiper Belt binaries. We, therefore, favor forming the family by a destructive collision of a single moon of Haumea. The probability for Haumea's initial giant impact in today's Kuiper Belt is less than 10-3. In our scenario, however, Haumea's giant impact can occur before the excitation of the Kuiper Belt and the ejection of the family members afterward. This has the advantage that one can preserve the dynamical coherence of the family and explain Haumea's original giant impact, which is several orders of magnitude more likely to have occurred in the primordial dynamically cold Kuiper Belt compared to the dynamically excited Kuiper Belt today.

Distribución superficial de impactos en Iapetus originada por el remanente de una colisión

NASA Astrophysics Data System (ADS)

Zoppetti, F. A.; Leiva, A. M.; Briozzo, C. B.

2015-08-01

By means of Circular Restricted Three Body Problem Saturn--Iapetus, we analize potential impact distributions on the surface of Iapetus, originated from considering a low-energy population generated as remnants of a collisional event occurred in the past on the surface of this satellite. The results are analized in order to offer a new approach to explain the origin of the albedo dichotomy observed on Iapetus.

Energetically consistent collisional gyrokinetics

DOE PAGES

Burby, J. W.; Brizard, A. J.; Qin, H.

2015-10-30

Here, we present a formulation of collisional gyrokinetic theory with exact conservation laws for energy and canonical toroidal momentum. Collisions are accounted for by a nonlinear gyrokinetic Landau operator. Gyroaveraging and linearization do not destroy the operator's conservation properties. Just as in ordinary kinetic theory, the conservation laws for collisional gyrokinetic theory are selected by the limiting collisionless gyrokinetic theory. (C) 2015 AIP Publishing LLC.

Polarization of fast particle beams by collisional pumping

DOEpatents

Stearns, J. Warren; Kaplan, Selig N.; Pyle, Robert V.; Anderson, L. Wilmer; Ruby, Lawrence; Schlachter, Alfred S.

1988-01-01

Method and apparatus for highly polarizing a fast beam of particles by collisional pumping, including generating a fast beam of particles, and also generating a thick electron-spin-polarized medium positioned as a target for the beam. The target is made sufficiently thick to allow the beam to interact with the medium to produce collisional pumping whereby the beam becomes highly polarized.

Effect of polarization force on the Jeans instability in collisional dusty plasmas

NASA Astrophysics Data System (ADS)

A, ABBASI; M, R. RASHIDIAN VAZIRI

2018-03-01

The Jeans instability in collisional dusty plasmas has been analytically investigated by considering the polarization force effect. Instabilities due to dust-neutral and ion-neutral drags can occur in electrostatic waves of collisional dusty plasmas with self-gravitating particles. In this study, the effect of gravitational force on heavy dust particles is considered in tandem with both the polarization and electrostatic forces. The theoretical framework has been developed and the dispersion relation and instability growth rate have been derived, assuming the plane wave approximation. The derived instability growth rate shows that, in collisional dusty plasmas, the Jeans instability strongly depends on the magnitude of the polarization force.

Syn-collisional felsic magmatism and continental crust growth: A case study from the North Qilian Orogenic Belt at the northern margin of the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Chen, Shuo; Niu, Yaoling; Xue, Qiqi

2018-05-01

The abundant syn-collisional granitoids produced and preserved at the northern Tibetan Plateau margin provide a prime case for studying the felsic magmatism as well as continental crust growth in response to continental collision. Here we present the results from a systematic study of the syn-collisional granitoids and their mafic magmatic enclaves (MMEs) in the Laohushan (LHS) and Machangshan (MCS) plutons from the North Qilian Orogenic Belt (NQOB). Two types of MMEs from the LHS pluton exhibit identical crystallization age ( 430 Ma) and bulk-rock isotopic compositions to their host granitoids, indicating their genetic link. The phase equilibrium constraints and pressure estimates for amphiboles from the LHS pluton together with the whole rock data suggest that the two types of MMEs represent two evolution products of the same hydrous andesitic magmas. In combination with the data on NQOB syn-collisional granitoids elsewhere, we suggest that the syn-collisional granitoids in the NQOB are material evidence of melting of ocean crust and sediment. The remarkable compositional similarity between the LHS granitoids and the model bulk continental crust in terms of major elements, trace elements, and some key element ratios indicates that the syn-collisional magmatism in the NQOB contributes to net continental crust growth, and that the way of continental crust growth in the Phanerozoic through syn-collisional felsic magmatism (production and preservation) is a straightforward process without the need of petrologically and physically complex processes.

Rotational properties of the binary and non-binary populations in the trans-Neptunian belt

NASA Astrophysics Data System (ADS)

Thirouin, A.; Noll, K. S.; Ortiz, J. L.; Morales, N.

2014-09-01

We present results for the short-term variability of binary trans-Neptunian objects (BTNOs). We performed CCD photometric observations using the 3.58 m Telescopio Nazionale Galileo (TNG), the 1.5 m Sierra Nevada Observatory (OSN) telescope, and the 1.23 m Centro Astronómico Hispano Alemán (CAHA) telescope at Calar Alto Observatory. We present results based on five years of observations and report the short-term variability of six BTNOs. Our sample contains three classical objects: (174567) 2003 MW12, or Varda, (120347) 2004 SB60, or Salacia, and 2002 VT130; one detached disk object: (229762) 2007 UK126; and two resonant objects: (341520) 2007 TY430 and (38628) 2000 EB173, or Huya. For each target, possible rotational periods and/or photometric amplitudes are reported. We also derived some physical properties from their light curves, such as density, primary and secondary sizes, and albedo. We compiled and analyzed a vast light curve database for TNOs including centaurs to determine the light-curve amplitude and spin frequency distributions for the binary and non-binary populations. The mean rotational periods, from the Maxwellian fits to the frequency distributions, are 8.63 ± 0.52 h for the entire sample, 8.37 ± 0.58 h for the sample without the binary population, and 10.11 ± 1.19 h for the binary population alone. Because the centaurs are collisionally more evolved, their rotational periods might not be so primordial. We computed a mean rotational period, from the Maxwellian fit, of 8.86 ± 0.58 h for the sample without the centaur population, and of 8.64 ± 0.67 h considering a sample without the binary and the centaur populations. According to this analysis, regular TNOs spin faster than binaries, which is compatible with the tidal interaction of the binaries. Finally, we examined possible formation models for several systems studied in this work and by our team in previous papers. Appendix A is available in electronic form at http://www.aanda.orgFull Table 1 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/569/A3

A Hybrid Model for Multiscale Laser Plasma Simulations with Detailed Collisional Physics

DTIC Science & Technology

2017-06-15

Validation against experimental data •Nonequilibrium radiation transport: coupling with a collisional-radiative model •Inelastic collisions in a MF...for Public Release; Distribution is Unlimited. PA# 17383 Collisional Radiative (CR) Overview Updates • Investigated Quasi -Steady-State • Investigated...Techniques Quasi Stead-State (QSS) • Assumes fast kinetics between states within an ion distribution • Assumes longer diffusion/decay times than

Polarization of fast particle beams by collisional pumping

DOEpatents

Stearns, J.W.; Kaplan, S.N.; Pyle, R.V.; Anderson, L.W.; Schlachter, A.S.; Ruby, L.

1984-10-19

The invention relates to method and apparatus for polarizing a fast beam of particles by collisional pumping, including generating a fast beam of particles, and generating a thick electron-spin-polarized medium positioned as a target for said beam, said medium being sufficiently thick to allow said beam to interact with said medium to produce collisional pumping whereby said particle beam becomes highly polarized.

Collisional damping of the geodesic acoustic mode with toroidal rotation. I. Viscous damping

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gong, Xueyu; Xie, Baoyi; Chen, You

2016-03-15

With the dispersion relation derived for the geodesic acoustic mode in toroidally rotating tokamak plasmas using the fluid model, the effect of the toroidal rotation on the collisional viscous damping of the geodesic acoustic mode is investigated. It is found that the collisional viscous damping of the geodesic acoustic mode has weak increase with respect to the toroidal Mach number.

Knowledge extraction from evolving spiking neural networks with rank order population coding.

PubMed

Soltic, Snjezana; Kasabov, Nikola

2010-12-01

This paper demonstrates how knowledge can be extracted from evolving spiking neural networks with rank order population coding. Knowledge discovery is a very important feature of intelligent systems. Yet, a disproportionally small amount of research is centered on the issue of knowledge extraction from spiking neural networks which are considered to be the third generation of artificial neural networks. The lack of knowledge representation compatibility is becoming a major detriment to end users of these networks. We show that a high-level knowledge can be obtained from evolving spiking neural networks. More specifically, we propose a method for fuzzy rule extraction from an evolving spiking network with rank order population coding. The proposed method was used for knowledge discovery on two benchmark taste recognition problems where the knowledge learnt by an evolving spiking neural network was extracted in the form of zero-order Takagi-Sugeno fuzzy IF-THEN rules.

Dimits shift in realistic gyrokinetic plasma-turbulence simulations.

PubMed

Mikkelsen, D R; Dorland, W

2008-09-26

In simulations of turbulent plasma transport due to long wavelength (k perpendicular rhoi < or = 1) electrostatic drift-type instabilities, we find a persistent nonlinear up-shift of the effective threshold. Next-generation tokamaks will likely benefit from the higher effective threshold for turbulent transport, and transport models should incorporate suitable corrections to linear thresholds. The gyrokinetic simulations reported here are more realistic than previous reports of a Dimits shift because they include nonadiabatic electron dynamics, strong collisional damping of zonal flows, and finite electron and ion collisionality together with realistic shaped magnetic geometry. Reversing previously reported results based on idealized adiabatic electrons, we find that increasing collisionality reduces the heat flux because collisionality reduces the nonadiabatic electron microinstability drive.

Near-Infrared Collisional Radiative Model for Xe Plasma Electrostatic Thrusters: The Role of Metastable Atoms

DTIC Science & Technology

2009-08-01

the measurements of Jung et al [3], ’BSR’ to the Breit- Pauli B-Spline ft-matrix method, and ’RDW to the relativistic distorted wave method. low...excitation cross sections using both relativistic distorted wave and semi-relativistic Breit- Pauli B-Spline R-matrix methods is presented. The model...population and line intensity enhancement. 15. SUBJECT TERMS Metastable xenon Electrostatic thruster Relativistic Breit- Pauli b-spline matrix

DBCC Software as Database for Collisional Cross-Sections

NASA Astrophysics Data System (ADS)

Moroz, Daniel; Moroz, Paul

2014-10-01

Interactions of species, such as atoms, radicals, molecules, electrons, and photons, in plasmas used for materials processing could be very complex, and many of them could be described in terms of collisional cross-sections. Researchers involved in plasma simulations must select reasonable cross-sections for collisional processes for implementing them into their simulation codes to be able to correctly simulate plasmas. However, collisional cross-section data are difficult to obtain, and, for some collisional processes, the cross-sections are still not known. Data on collisional cross-sections can be obtained from numerous sources including numerical calculations, experiments, journal articles, conference proceedings, scientific reports, various universities' websites, national labs and centers specifically devoted to collecting data on cross-sections. The cross-sections data received from different sources could be partial, corresponding to limited energy ranges, or could even not be in agreement. The DBCC software package was designed to help researchers in collecting, comparing, and selecting cross-sections, some of which could be constructed from others or chosen as defaults. This is important as different researchers may place trust in different cross-sections or in different sources. We will discuss the details of DBCC and demonstrate how it works and why it is beneficial to researchers working on plasma simulations.

Eulerian simulations of collisional effects on electrostatic plasma waves

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pezzi, Oreste; Valentini, Francesco; Perrone, Denise

2013-09-15

The problem of collisions in a plasma is a wide subject with a huge historical literature. In fact, the description of realistic plasmas is a tough problem to attack, both from the theoretical and the numerical point of view. In this paper, a Eulerian time-splitting algorithm for the study of the propagation of electrostatic waves in collisional plasmas is presented. Collisions are modeled through one-dimensional operators of the Fokker-Planck type, both in linear and nonlinear forms. The accuracy of the numerical code is discussed by comparing the numerical results to the analytical predictions obtained in some limit cases when tryingmore » to evaluate the effects of collisions in the phenomenon of wave plasma echo and collisional dissipation of Bernstein-Greene-Kruskal waves. Particular attention is devoted to the study of the nonlinear Dougherty collisional operator, recently used to describe the collisional dissipation of electron plasma waves in a pure electron plasma column [M. W. Anderson and T. M. O'Neil, Phys. Plasmas 14, 112110 (2007)]. Finally, for the study of collisional plasmas, a recipe to set the simulation parameters in order to prevent the filamentation problem can be provided, by exploiting the property of velocity diffusion operators to smooth out small velocity scales.« less

Collisionality dependence and ion species effects on heat transport in He and H plasma, and the role of ion scale turbulence in LHD

NASA Astrophysics Data System (ADS)

Tanaka, K.; Nagaoka, K.; Murakami, S.; Takahashi, H.; Osakabe, M.; Yokoyama, M.; Seki, R.; Michael, C. A.; Yamaguchi, H.; Suzuki, C.; Shimizu, A.; Tokuzawa, T.; Yoshinuma, M.; Akiyama, T.; Ida, K.; Yamada, I.; Yasuhara, R.; Funaba, H.; Kobayashi, T.; Yamada, H.; Du, X. D.; Vyacheslavov, L. N.; Mikkelsen, D. R.; Yun, G. S.; the LHD Experimental Group

2017-11-01

Surveys of the ion and electron heat transports of neutral beam (NB) heating plasma were carried out by power balance analysis in He and H rich plasma at LHD. Collisionality was scanned by changing density and heating power. The characteristics of the transport vary depending on collisionality. In low collisionality, with low density and high heating power, an ion internal transport barrier (ITB) was formed. The ion heat conductivity (χ i) is lower than electron heat conductivity (χ e) in the core region at ρ  <  0.7. On the other hand, in high collisionality, with high density and low heating power, χ i is higher than χ e across the entire range of plasma. These different confinement regimes are associated with different fluctuation characteristics. In ion ITB, fluctuation has a peak at ρ  =  0.7, and in normal confinement, fluctuation has a peak at ρ  =  1.0. The two confinement modes change gradually depending on the collisionality. Scans of concentration ratio between He and H were also performed. The ion confinement improvements were investigated using gyro-Bohm normalization, taking account of the effective mass and charge. The concentration ratio affected the normalized χ i only in the edge region (ρ ~ 1.0). This indicates ion species effects vary depending on collisionality. Turbulence was modulated by the fast ion loss instability. The modulation of turbulence is higher in H rich than in He rich plasma.

A non-local thermodynamic equilibrium radiative transfer model for ingrared emissions in the atmosphere of Mars. 1: Theoretical basis and nighttime populations of vibrational levels

NASA Astrophysics Data System (ADS)

Lopez-Valverde, M. A.; Lopez-Puertas, M.

1994-06-01

A radiative transfer model to study the infrared (1-20 micrometer) emissions of the CO and CO2 molecules in the atmosphere of Mars has been developed. The model runs from the planet's surface up to 180 km and has been especially elaborated to study non-local thermodynamic equilibrium (non-LTE) situations. it includes the most important energy levels and vibration-rotation bands able to give a significant atmospheric emission or produce a significant cooling/heating rate. Exchanges of energy in thermal and nonthermal (vibrational-vibrational) collisions as well as by radiative processes have been included. An exhaustive review of the rate constants for vibrational-thermal and vibrational-vibrational collisional exchanges has been carried out. Radiative transfer processes have been treated by using a modified Curtis matrix formulation. The populations of the excited vibrational levels for nighttime conditions are presented along with a sensitivity study of their variations to the kinetic temperature profile and to collisional rate constants. The populations of the CO2(0, nu2, 0) levels follow LTE up to about 85 km with the radiative transfer processes playing a very important role in maintaining this situation above the tropopause. This result is pratically insensitive to plausible variations in the kinetic temperature of the troposphere. The uncertainties in the rate constants play an important role in determining the populations of the levels at thermospheric altitudes, but they are of little significance for the heights where they start departing from LTE. The CO2(0, 00, 1) level breaks down from LTE at about 60 km, the laser bands at 10 micrometers giving a significant contribution to its population in the Martian mesosphere. The CO(1) level stars departing around 50 km and is noticeably enhanced in the upper thermosphere by absorption of upwelling flux from the planets' surface.

Comparative Transcriptomics Implicates Mechansims of Evolved Pollution Tolerance in a Killifish Population

EPA Science Inventory

Wild populations of the killifish Fundulus heteroclitus resident in heavily contaminated North American Atlantic coast estuaries have recently and independently evolved dramatic, heritable, and adaptive pollution tolerance. We compared physiological and transcriptome responses t...

LIDT-DD: A new self-consistent debris disc model that includes radiation pressure and couples dynamical and collisional evolution

NASA Astrophysics Data System (ADS)

Kral, Q.; Thébault, P.; Charnoz, S.

2013-10-01

Context. In most current debris disc models, the dynamical and the collisional evolutions are studied separately with N-body and statistical codes, respectively, because of stringent computational constraints. In particular, incorporating collisional effects (especially destructive collisions) into an N-body scheme has proven a very arduous task because of the exponential increase of particles it would imply. Aims: We present here LIDT-DD, the first code able to mix both approaches in a fully self-consistent way. Our aim is for it to be generic enough to be applied to any astrophysical case where we expect dynamics and collisions to be deeply interlocked with one another: planets in discs, violent massive breakups, destabilized planetesimal belts, bright exozodiacal discs, etc. Methods: The code takes its basic architecture from the LIDT3D algorithm for protoplanetary discs, but has been strongly modified and updated to handle the very constraining specificities of debris disc physics: high-velocity fragmenting collisions, radiation-pressure affected orbits, absence of gas that never relaxes initial conditions, etc. It has a 3D Lagrangian-Eulerian structure, where grains of a given size at a given location in a disc are grouped into super-particles or tracers whose orbits are evolved with an N-body code and whose mutual collisions are individually tracked and treated using a particle-in-a-box prescription designed to handle fragmenting impacts. To cope with the wide range of possible dynamics for same-sized particles at any given location in the disc, and in order not to lose important dynamical information, tracers are sorted and regrouped into dynamical families depending on their orbits. A complex reassignment routine that searches for redundant tracers in each family and reassignes them where they are needed, prevents the number of tracers from diverging. Results: The LIDT-DD code has been successfully tested on simplified cases for which robust results have been obtained in past studies: we retrieve the classical features of particle size distributions in unperturbed discs and the outer radial density profiles in ~r-1.5 outside narrow collisionally active rings as well as the depletion of small grains in dynamically cold discs. The potential of the new code is illustrated with the test case of the violent breakup of a massive planetesimal within a debris disc. Preliminary results show that we are able for the first time to quantify the timescale over which the signature of such massive break-ups can be detected. In addition to studying such violent transient events, the main potential future applications of the code are planet and disc interactions, and more generally, any configurations where dynamics and collisions are expected to be intricately connected.

Collisional quenching dynamics and reactivity of highly vibrationally excited molecules

NASA Astrophysics Data System (ADS)

Liu, Qingnan

Highly excited molecules are of great importance in many areas of chemistry including photochemistry. The dynamics of highly excited molecules are affected by the intermolecular and intramolecular energy flow between many different kinds of motions. This thesis reports investigations of the collisional quenching and reactivity of highly excited molecules aimed at understanding the dynamics of highly excited molecules. There are several important questions that are addressed. How do molecules behave in collisions with a bath gas? How do the energy distributions evolve in time? How is the energy partitioned for both the donor and bath molecules after collisions? How do molecule structure, molecule state density and intermolecular potential play the role during collisional energy transfer? To answer these questions, collisional quenching dynamics and reactivity of highly vibrationally excited azabenzene molecules have been studied using high resolution transient IR absorption spectroscopy. The first study shows that the alkylated pyridine molecules that have been excited with Evib˜38,800 cm-1 impart less rotational and translational energy to CO2 than pyridine does. Comparison between the alkylated donors shows that the strong collisions are reduced for donors with longer alkyl chains by lowering the average energy per mode but longer alkyl chain have increased flexibility and higher state densities that enhance energy loss via strong collisions. In the second study, the role of hydrogen bonding interactions is explored in collision of vibrationally excited pyridines with H2O. Substantial difference in the rotational energy of H 2O is correlated with the structure of the global energy minimum. A torque-inducing mechanism is proposed that involves directed movement of H 2O between sigma and pi-hydrogen bonding interactions with the pyridine donors. In the third study the dynamics of strong and weak collisions for highly vibrationally excited methylated pyridine molecules with HOD are reported. Lower limits to the overall collision rate are directly determined from experimental measurements and compared to Lennard-Jones models which underestimate the collision rate for highly vibrationally excited azabenzenes with HOD. The fourth study explores reactive collisions of highly vibrationally excited pyridine molecules. D-atom abstraction reactions of highly vibrationally excited pyridine-d5 molecules and chlorine radical show a rate enhancement of ˜90 relative to the reaction of room temperature pyridine-d5 with chlorine radical. A single quantum of C-D stretching vibration is observed to be used for the vibrational driven reaction. Reactions of 2-picoline-d3 with chlorine radical do not show a similar enhancement. For this case, the fast rotation of --CD3 group in highly vibrationally excited 2-picoline-d3 inhibits the D-atom abstraction.

Simulating star clusters with the AMUSE software framework. I. Dependence of cluster lifetimes on model assumptions and cluster dissolution modes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Whitehead, Alfred J.; McMillan, Stephen L. W.; Vesperini, Enrico

2013-12-01

We perform a series of simulations of evolving star clusters using the Astrophysical Multipurpose Software Environment (AMUSE), a new community-based multi-physics simulation package, and compare our results to existing work. These simulations model a star cluster beginning with a King model distribution and a selection of power-law initial mass functions and contain a tidal cutoff. They are evolved using collisional stellar dynamics and include mass loss due to stellar evolution. After studying and understanding that the differences between AMUSE results and results from previous studies are understood, we explored the variation in cluster lifetimes due to the random realization noisemore » introduced by transforming a King model to specific initial conditions. This random realization noise can affect the lifetime of a simulated star cluster by up to 30%. Two modes of star cluster dissolution were identified: a mass evolution curve that contains a runaway cluster dissolution with a sudden loss of mass, and a dissolution mode that does not contain this feature. We refer to these dissolution modes as 'dynamical' and 'relaxation' dominated, respectively. For Salpeter-like initial mass functions, we determined the boundary between these two modes in terms of the dynamical and relaxation timescales.« less

Dating the Tidal Disruption of Globular Clusters with GAIA Data on Their Stellar Streams

NASA Astrophysics Data System (ADS)

Bose, Sownak; Ginsburg, Idan; Loeb, Abraham

2018-05-01

The Gaia mission promises to deliver precision astrometry at an unprecedented level, heralding a new era for discerning the kinematic and spatial coordinates of stars in our Galaxy. Here, we present a new technique for estimating the age of tidally disrupted globular cluster streams using the proper motions and parallaxes of tracer stars. We evolve the collisional dynamics of globular clusters within the evolving potential of a Milky Way-like halo extracted from a cosmological ΛCDM simulation and analyze the resultant streams as they would be observed by Gaia. The simulations sample a variety of globular cluster orbits, and account for stellar evolution and the gravitational influence of the disk of the Milky Way. We show that a characteristic timescale, obtained from the dispersion of the proper motions and parallaxes of stars within the stream, is a good indicator for the time elapsed since the stream has been freely expanding away due to the tidal disruption of the globular cluster. This timescale, in turn, places a lower limit on the age of the cluster. The age can be deduced from astrometry using a modest number of stars, with the error on this estimate depending on the proximity of the stream and the number of tracer stars used.

Age and P-T Conditions of the Gridino eclogite in the Belomorian Province, Russia

NASA Astrophysics Data System (ADS)

Yu, Huanglu; Zhang, Lifei; Guo, Jinghui

2017-04-01

The Russian Belomorian eclogite was once regarded as Archean in age and the oldest eclogite in the world. However, its Archean age is disputed. The Gridino ecogite, the abundant eclogite in Belomorian province, is located in the southwest of the Paleoproterozoic Lapland-Kola collisional orogeny, and occurs as boudins and metamorphosed dykes within the tonalite-trondhjemite-granodiorite (TTG) gneisses. Zircons from these eclogites have magmatic cores and metamorphic rims. Metamorphic rims, which contain typical metamorphic mineral inclusions of omphacite and garnet, and are characterized by low Th/U ratios (< 0.035) and flat HREE patterns, yield a U-Pb age of ca. 1.90 Ga. The δ18O values of 6.23 to 6.80 ‰ of zircon rims are acquired during the eclogite-facies metamorphism. On the contrary, zircon cores display higher Th/U ratios 0.18-0.45, negative Eu anomalies and strong enrichment in HREE and have Neoarchean U-Pb ages of ca. 2.70 Ga. δ18O values of 5.64 to 6.07 ‰ suggest the possibility of crystallization from slightly evolved mantle-derived magmas. A three-stage metamorphic evolution has been recognized in the Gridino eclogite based on phase equilibria modeling: prograde epidote amphibolite facies, peak eclogite facies and retrogressed high-pressure granulite facies. The peak metamorphic P-T conditions (790-815 °C, 21-22 kbar) give an apparent geothermal gradient of 11-12 °C/km for Lapland-Kola collisional orogeny during Paleoproterozoic. The Gridino eclogite is not Archean, but the known oldest Paleoproterozoic eclogite, which may respond to the assembly of Columbia supercontinent.

Diachronous evolution of volcano-sedimentary basins north of the Congo craton: Insights from U Pb ion microprobe dating of zircons from the Poli, Lom and Yaoundé Groups (Cameroon)

NASA Astrophysics Data System (ADS)

Toteu, Sadrack Félix; Penaye, Joseph; Deloule, Etienne; Van Schmus, William Randall; Tchameni, Rigobert

2006-04-01

Ion microprobe U-Pb dating of zircons from Neoproterozoic volcano-sedimentary sequences in Cameroon north of the Congo craton is presented. For the Poli basin, the depositional age is constrained between 700-665 Ma; detrital sources comprise ca. 920, 830, 780 and 736 Ma magmatic zircons. In the Lom basin, the depositional age is constrained between 613 and 600 Ma, and detrital sources include Archaean to Palaeoproterozoic, late Mesoproterozoic to early Neoproterozoic (1100-950 Ma), and Neoproterozoic (735, 644 and 613 Ma) zircons. The Yaoundé Group is probably younger than 625 Ma, and detrital sources include Palaeoproterozoic and Neoproterozoic zircons. The depositional age of the Mahan metavolcano-sedimentary sequence is post-820 Ma, and detrital sources include late Mesoproterozoic (1070 Ma) and early Neoproterozoic volcanic rocks (824 Ma). The following conclusions can be made from these data. (1) The three basins evolved during the Pan-African event but are significantly different in age and tectonic setting; the Poli is a pre- to syn-collisional basin developed upon, or in the vicinity of young magmatic arcs; the Lom basin is post-collisional and intracontinental and developed on old crust; the tectono-metamorphic evolution of the Yaoundé Group resulted from rapid tectonic burial and subsequent collision between the Congo craton and the Adamawa-Yade block. (2) Late Mesoproterozoic to early Neoproterozoic inheritance reflects the presence of magmatic event(s) of this age in west-central Africa.

Coagulation of grains in static and collapsing protostellar clouds

NASA Technical Reports Server (NTRS)

Weidenschilling, S. J.; Ruzmaikina, T. V.

1994-01-01

We simulate collisional evolution of grains in dense turbulent molecular cloud cores (or Bok globules) in static equilibrium and free-fall collapse, assuming spherical symmetry. Relative velocities are due to thermal motions, differential settling, and turbulence, with the latter dominant for sonic turbulence with an assumed Kolmogorov spectrum. Realistic criteria are used to determine outcomes of collisions (coagulation vs. destruction) as functions of particle size and velocity. Results are presented for a variety of cloud parameters (radial density profile, turbulent velocity) and particle properties (density, impact strength). Results are sensitive to the assumed mechanical properties (density and impact strength) of grain aggregates. Particle growth is enhanced if aggregates have low density or fractal structures. On a timescale of a few Myr, an initial population of 0.1 micrometers grains may produce dense compact particles approximately 1 micrometer in size, or fluffy aggregates approximately 100 micrometers. For impact strengths less than or equal to 10(exp 6) ergs/g, a steady state is reached between coagulation of small grains and collisional disruption of larger aggregates. Formation of macroscopic aggregates requires high mechanical strengths and low aggregate densities. We assume sonic turbulence during collapse, with varied eddy size scales determining the dissipation rate or turbulence strength. The degree of collisional evolution during collapse is sensitive to the assumed small-scale structure (inner sc ale) of the turbulence. Weak turbulence results in few collisions and preserves the precollapse particle size distribution with little change. Strong turbulence tends to produce net destruction, rather than particle growth, during infall, unless inpact strengths are greater than 10(exp 6)ergs/g.

Copernicus observations of Nova Cygni 1975

NASA Technical Reports Server (NTRS)

Jenkins, E. B.; Snow, T. P.; Upson, W. L.; Anderson, R.; Starrfield, S. G.; Gallagher, J. S.; Friedjung, M.; Linsky, J. L.; Henry, R. C.; Moos, H. W.

1977-01-01

Near-ultraviolet radiation from Nova Cygni 1975 was detected by the Copernicus satellite on five occasions from 1975 September 1 to 1975 September 9. The nova was not seen in the UV after this date. The principal result was the observation of a broad emission feature from the Mg II doublet at 2800 A. The absence of strong UV radiation at shorter wavelengths suggests that these lines are produced by collisional excitation in the outer layers of an expanding shell with electron temperature of approximately 4000 K. The absence of observed emission lines from highly ionized species indicates that the amount of material with log T between 4.4 and 5.7 is less than 0.001 times that which produces the Mg II emission. The continuum flux in the near-UV decreased as the nova evolved, showing that the total luminosity decreased as the nova faded in the visible.

Discovery of Grooves on Gaspra

USGS Publications Warehouse

Veverka, J.; Thomas, P.; Simonelli, D.; Belton, M.J.S.; Carr, M.; Chapman, C.; Davies, M.E.; Greeley, R.; Greenberg, R.; Head, J.; Klaasen, K.; Johnson, T.V.; Morrison, D.; Neukum, G.

1994-01-01

We report the discovery of grooves in Galileo high-resolution images of Gaspra. These features, previously seen only on Mars' satellite Phobos, are most likely related to severe impacts. Grooves on Gaspra occur as linear and pitted depressions, typically 100-200 m wide, 0.8 to 2.5 km long, and 10-20 m deep. Most occur in two major groups, one of which trends approximately parallel to the asteroid's long axis, but is offset by some 15??; the other is approximately perpendicular to this trend. The first of these directions falls along a family of planes which parallel three extensive flat facets identified by Thomas et al., Icarus 107. The occurrence of grooves on Gaspra is consistent with other indications (irregular shape, cratering record) that this asteroid has evolved through a violent collisional history. The bodywide congruence of major groove directions and other structural elements suggests that present-day Gaspra is a globally coherent body. ?? 1994 Academic Press. All rights reserved.

Nanodust released in interplanetary collisions

NASA Astrophysics Data System (ADS)

Lai, H. R.; Russell, C. T.

2018-07-01

The lifecycle of near-Earth objects (NEOs) involves a collisional cascade that produces ever smaller debris ending with nanoscale particles which are removed from the solar system by radiation pressure and electromagnetic effects. It has been proposed that the nanodust clouds released in collisions perturb the background interplanetary magnetic field and create the interplanetary field enhancements (IFEs). Assuming that this IFE formation scenario is actually operating, we calculate the interplanetary collision rate, estimate the total debris mass carried by nanodust, and compare the collision rate with the IFE rate. We find that to release the same amount of nanodust, the collision rate is comparable to the observed IFE rate. Besides quantitatively testing the association between the collisions evolving large objects and giant solar wind structures, such a study can be extended to ranges of smaller scales and to investigate the source of moderate and small solar wind perturbations.

Density engineering of an oscillating soliton/vortex ring in a Bose-Einstein condensate

NASA Astrophysics Data System (ADS)

Levy, Shahar; Shomroni, Itay; Lahoud, Elias; Steinhauer, Jeff

2008-05-01

We study solitons in a Bose-Einstein condensate by engineering a density minimum on the healing length scale, using a far off-resonant laser beam. This results in a pair of counterpropagating solitons, which is the low collisional energy version of the celebrated matter wave interference pattern [M. R. Andrews et al., Science 275, 637 (1997)]. The solitons subsequently evolve into a pair of periodic soliton/vortex rings. We image the vortex rings and solitons in-situ on the healing length scale. This stable periodic evolution is in sharp contrast to the behavior of previous experiments in which the solitons decay irreversibly into vortex rings via the snake instability. The periodic oscillation between two qualitatively different forms seems to be a rare phenomenon in nature. We explain this phenomenon in terms of conservation of mass and energy in a narrow condensate.

Pressure-anisotropy-induced nonlinearities in the kinetic magnetorotational instability

NASA Astrophysics Data System (ADS)

Squire, J.; Quataert, E.; Kunz, M. W.

2017-12-01

In collisionless and weakly collisional plasmas, such as hot accretion flows onto compact objects, the magnetorotational instability (MRI) can differ significantly from the standard (collisional) MRI. In particular, pressure anisotropy with respect to the local magnetic-field direction can both change the linear MRI dispersion relation and cause nonlinear modifications to the mode structure and growth rate, even when the field and flow perturbations are very small. This work studies these pressure-anisotropy-induced nonlinearities in the weakly nonlinear, high-ion-beta regime, before the MRI saturates into strong turbulence. Our goal is to better understand how the saturation of the MRI in a low-collisionality plasma might differ from that in the collisional regime. We focus on two key effects: (i) the direct impact of self-induced pressure-anisotropy nonlinearities on the evolution of an MRI mode, and (ii) the influence of pressure anisotropy on the `parasitic instabilities' that are suspected to cause the mode to break up into turbulence. Our main conclusions are: (i) The mirror instability regulates the pressure anisotropy in such a way that the linear MRI in a collisionless plasma is an approximate nonlinear solution once the mode amplitude becomes larger than the background field (just as in magnetohyrodynamics). This implies that differences between the collisionless and collisional MRI become unimportant at large amplitudes. (ii) The break up of large-amplitude MRI modes into turbulence via parasitic instabilities is similar in collisionless and collisional plasmas. Together, these conclusions suggest that the route to magnetorotational turbulence in a collisionless plasma may well be similar to that in a collisional plasma, as suggested by recent kinetic simulations. As a supplement to these findings, we offer guidance for the design of future kinetic simulations of magnetorotational turbulence.

Split-probe hybrid femtosecond/picosecond rotational CARS for time-domain measurement of S-branch Raman linewidths within a single laser shot.

PubMed

Patterson, Brian D; Gao, Yi; Seeger, Thomas; Kliewer, Christopher J

2013-11-15

We introduce a multiplex technique for the single-laser-shot determination of S-branch Raman linewidths with high accuracy and precision by implementing hybrid femtosecond (fs)/picosecond (ps) rotational coherent anti-Stokes Raman spectroscopy (CARS) with multiple spatially and temporally separated probe beams derived from a single laser pulse. The probe beams scatter from the rotational coherence driven by the fs pump and Stokes pulses at four different probe pulse delay times spanning 360 ps, thereby mapping collisional coherence dephasing in time for the populated rotational levels. The probe beams scatter at different folded BOXCARS angles, yielding spatially separated CARS signals which are collected simultaneously on the charge coupled device camera. The technique yields a single-shot standard deviation (1σ) of less than 3.5% in the determination of Raman linewidths and the average linewidth values obtained for N(2) are within 1% of those previously reported. The presented technique opens the possibility for correcting CARS spectra for time-varying collisional environments in operando.

The recent breakup of an asteroid in the main-belt region.

PubMed

Nesvorný, David; Bottke, William F; Dones, Luke; Levison, Harold F

2002-06-13

The present population of asteroids in the main belt is largely the result of many past collisions. Ideally, the asteroid fragments resulting from each impact event could help us understand the large-scale collisions that shaped the planets during early epochs. Most known asteroid fragment families, however, are very old and have therefore undergone significant collisional and dynamical evolution since their formation. This evolution has masked the properties of the original collisions. Here we report the discovery of a family of asteroids that formed in a disruption event only 5.8 +/- 0.2 million years ago, and which has subsequently undergone little dynamical and collisional evolution. We identified 39 fragments, two of which are large and comparable in size (diameters of approximately 19 and approximately 14 km), with the remainder exhibiting a continuum of sizes in the range 2-7 km. The low measured ejection velocities suggest that gravitational re-accumulation after a collision may be a common feature of asteroid evolution. Moreover, these data can be used to check numerical models of larger-scale collisions.

Coulomb thermal properties and stability of the Io plasma torus

NASA Technical Reports Server (NTRS)

Barbosa, D. D.; Coroniti, F. V.; Eviatar, A.

1983-01-01

Coulomb collisional energy exchange rates are computed for a model of the Io plasma torus consisting of newly created pickup ions, a background of thermally degraded intermediary ions, and a population of cooler electrons. The electrons are collisionally heated by both the pickup ions and background ions and are cooled by electron impact excitation of plasma ions which radiate in the EUV. It is found that a relative concentration of S III pickup ions forbidden S III/electrons = 0.1 with a temperature of 340 eV can deliver energy to the electrons at a rate of 3 x 10 to the -13th erg/cu cm per sec, sufficient to power the EUV emissions in the Io torus. The model predicts a background ion temperature Ti of about 53 eV and an electron temperature Te of about 5.5 eV on the basis of steady-state energy balance relations at Coulomb rates. The model also predicts electron temperature fluctuations at the 30 percent level on a time scale of less than 11 hours, consistent with recent observations of this phenomenon.

The effect of collisionality and diamagnetism on the plasma dynamo

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ji, H.; Yagi, Y.; Hattori, K.

1995-04-28

Fluctuation-induced dynamo forces are measured over a wide range of electron collisionality in the edge of TPE-1RM20 Reversed-Field Pinch (RFP). In the collisionless region the Magnetohydrodynamic (MHD) dynamo alone can sustain the parallel current, while in the collisional region a new dynamo mechanism resulting from the fluctuations in the electron diamagnetic drift becomes dominant. A comprehensive picture of the RFP dynamo emerges by combining with earlier results from MST and REPUTE RFPs.

Complexity Reduction of Collisional-Radiative Kinetics for Atomic Plasma

DTIC Science & Technology

2013-12-23

through collisional and radiative interactions .4–6 The most accurate treatment for these non- equilibrium plasmas requires a state-to-state approach,7–13...CR system versus time, during con- stant-Te plasma evolution from a low -temperature ASDF and low electron number density; as excitation and...Collisional-radiative model in air for earth re-entry problems,” Phys. Plasmas 13, 043502 (2006). 9C. O. Laux, L. Pierrot, and R. J. Gessman, “State-to

The effect of external magnetic field on the bremsstrahlung nonlinear absorption mechanism in the interaction of high intensity short laser pulse with collisional underdense plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sedaghat, M.; Ettehadi-Abari, M.; Shokri, B., E-mail: b-shokri@sbu.ac.ir

2015-03-15

Laser absorption in the interaction between ultra-intense femtosecond laser and solid density plasma is studied theoretically here in the intensity range Iλ{sup 2}≃10{sup 14}−10{sup 16}Wcm{sup −2}μm{sup 2}. The collisional effect is found to be significant when the incident laser intensity is less than 10{sup 16}Wcm{sup −2}μm{sup 2}. In the current work, the propagation of a high frequency electromagnetic wave, for underdense collisional plasma in the presence of an external magnetic field is investigated. It is shown that, by considering the effect of the ponderomotive force in collisional magnetized plasmas, the increase of laser pulse intensity leads to steepening of themore » electron density profile and the electron bunches of plasma makes narrower. Moreover, it is found that the wavelength of electric and magnetic fields oscillations increases by increasing the external magnetic field and the density distribution of electrons also grows in comparison with the unmagnetized collisional plasma. Furthermore, the spatial damping rate of laser energy and the nonlinear bremsstrahlung absorption coefficient are obtained in the collisional regime of magnetized plasma. The other remarkable result is that by increasing the external magnetic field in this case, the absorption coefficient increases strongly.« less

Collisional transport across the magnetic field in drift-fluid models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Madsen, J., E-mail: jmad@fysik.dtu.dk; Naulin, V.; Nielsen, A. H.

2016-03-15

Drift ordered fluid models are widely applied in studies of low-frequency turbulence in the edge and scrape-off layer regions of magnetically confined plasmas. Here, we show how collisional transport across the magnetic field is self-consistently incorporated into drift-fluid models without altering the drift-fluid energy integral. We demonstrate that the inclusion of collisional transport in drift-fluid models gives rise to diffusion of particle density, momentum, and pressures in drift-fluid turbulence models and, thereby, obviates the customary use of artificial diffusion in turbulence simulations. We further derive a computationally efficient, two-dimensional model, which can be time integrated for several turbulence de-correlation timesmore » using only limited computational resources. The model describes interchange turbulence in a two-dimensional plane perpendicular to the magnetic field located at the outboard midplane of a tokamak. The model domain has two regions modeling open and closed field lines. The model employs a computational expedient model for collisional transport. Numerical simulations show good agreement between the full and the simplified model for collisional transport.« less

Dispersion of the Himalia family of jovian irregular satellites by planetesimal encounters

NASA Astrophysics Data System (ADS)

Li, Daohai; Christou, Apostolos

2017-06-01

Giant planets are believed to have migrated significant radial distances due to interaction with a primordial planetesimal disk (Tsiganis et al. 2005). This process profoundly sculpted the solar system, shaping the distribution of the different types of heliocentric objects: the giant planets, the Trojans, the Main Asteroid Belt and the KBOs. Meanwhile, the same migration may have influenced the distribution of objects in the local planetocentric system as well. Since migration is achieved mainly by planet-planetesimal encounters, we focus on irregular satellites far from the host, thus susceptible to planetesimal perturbations. Specifically, we aim to reproduce a puzzling feature of the jovian Himalia group of prograde satellites: a wide spread in $a$ and $e$, with all group members being $>200$ m/s from Himalia and apparently too high to be consistent with a purely collisional origin. Here we investigate the evolution of a pre-existing Himalia group during planetary migration.We do this in a two-step procedure. Firstly, we perform migration simulations and record the states of planetesimals approaching Jupiter. Secondly, a nascent, closely-packed Himalia group with velocity dispersion of a few 10 m/s is integrated under the gravitational disturbance of the planetesimal fly-bys. We find that these planetesimal encounters disperse the group dramatically, bumping $\\sim 60\\%$ of the members to $>200$ m/s with respect to Himalia. Particularly, $a$ and $e$ suffer the most variation while the change in $i$ is often limited, matching the actual values for the observed group fairly well.Current models posit extensive collisional processing of the irregular satellite population following the planet migration phase (Bottke et al. 2010). In evaluating the collisional probability between a group member and Himalia, we find that the closer they are, the more likely that collisions occur. This suggests that members adjacent to Himalia are more likely to be collisionally removed, further modifying the group.We propose that, if the formation of the Himalia group occurred before the end of the migration phase, planetesimal-induced dispersion must have contributed significantly to the orbital distribution of the observed group.

Gyrokinetic-water-bag modeling of low-frequency instabilities in a laboratory magnetized plasma column

NASA Astrophysics Data System (ADS)

Gravier, E.; Klein, R.; Morel, P.; Besse, N.; Bertrand, P.

2008-12-01

A new model is presented, named collisional-gyro-water-bag (CGWB), which describes the collisional drift waves and ion-temperature-gradient (ITG) instabilities in a plasma column. This model is based on the kinetic gyro-water-bag approach recently developed [P. Morel et al., Phys. Plasmas 14, 112109 (2007)] to investigate ion-temperature-gradient modes. In CGWB electron-neutral collisions have been introduced and are now taken into account. The model has been validated by comparing CGWB linear analysis with other models previously proposed and experimental results as well. Kinetic effects on collisional drift waves are investigated, resulting in a less effective growth rate, and the transition from collisional drift waves to ITG instability depending on the ion temperature gradient is studied.

A population of comets in the main asteroid belt.

PubMed

Hsieh, Henry H; Jewitt, David

2006-04-28

Comets are icy bodies that sublimate and become active when close to the Sun. They are believed to originate in two cold reservoirs beyond the orbit of Neptune: the Kuiper Belt (equilibrium temperatures of approximately 40 kelvin) and the Oort Cloud (approximately 10 kelvin). We present optical data showing the existence of a population of comets originating in a third reservoir: the main asteroid belt. The main-belt comets are unlike the Kuiper Belt and Oort Cloud comets in that they likely formed where they currently reside and may be collisionally activated. The existence of the main-belt comets lends new support to the idea that main-belt objects could be a major source of terrestrial water.

Effects of plasma flows on particle diffusion in stochastic magnetic fields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vlad, M.; Spineanu, F.; Misguich, J.H.

1996-07-01

The study of collisional test particle diffusion in stochastic magnetic fields is extended to include the effects of the macroscopic flows of the plasma (drifts). We show that a substantial amplification of the diffusion coefficient can be obtained. This effect is produced by the combined action of the parallel collisional velocity and of the average drifts. The perpendicular collisional velocity influences the effective diffusion only in the limit of small average drifts. {copyright} {ital 1996 The American Physical Society.}

Late Ediacaran volcano-sedimentary successions of southern Sinai (Egypt): tracing the evolution from late- to post-collisional volcanism and its relation to A-type rocks

NASA Astrophysics Data System (ADS)

Azer, Mokhles; Asimow, Paul; Obeid, Mohamed; Price, Jason; Wang, Max

2017-04-01

The Late Ediacaran post-collisional volcano-sedimentary successions exposed in southern Sinai (Egypt) represent the last stage of magmatic activity associated with assembly of the northernmost segment of the Neoproterozoic Arabian-Nubian Shield. To clarify the age and tempo of post-collisional activity, three volcanic successions from southern Sinai were selected for the present study: the Sahiya, Iqna Shar'a and Meknas volcanics. They comprise a series of intermediate to silicic volcanic flows and their pyroclastic rocks. New zircon U-Pb dating by SIMS of the lava flows from the three successions yielded ages ranging between ca. 619 to 600 Ma. Combined with field evidence and the geochemical data, the obtained SIMS zircon ages enable us to recognize two phases of volcanic activity in southern Sinai at ca. 619-615 Ma and 606-600 Ma. Both age groups were found within the more northerly volcanic successions at Iqna Shar'a and Meknas and in both these sequences the younger phase uncomformably overlies the older phase. Only the older ages, ca. 615-619 Ma, were found in the Sahiya volcanics, exposed at the southern tip of Sinai. The ages of the youngest calc-alkaline volcanics in the study areas are similar to or slightly younger than the earliest phases of alkaline volcanism in southern Sinai, indicating coeval extrusion of calc-alkalic and alkalic A-type rocks. This observation corroborates similar observations documenting cogenetic calc-alkalic and alkalic plutons in the surrounding areas in southern Sinai. Geochemically, the volcanic rocks of the three successions display large silica variations and are mostly medium- to high-K calc-alkaline rocks. The first phase, from ca. 619-615 Ma, observed in all three volcanic suites, comprises basaltic andesite, andesite and dacite, whereas the second phase, from ca. 606-600 Ma and observed only in the northern volcanic suites (Iqna Shar'a and Meknas), comprises dacite, rhyodacite and rhyolite. In the Sahiya succession basal andesite and dacite have characteristics of low-silica adakitic rocks. The evolved rhyolites of the second phase have characteristics that are transitional to alkaline, A-type magmas but this is attributed to extensive fractionation and does not require a change in the tectonic regime. Although their eruption in a post-collisional setting, the Sahiya, Iqna Shar'a and Meknas volcanic suites all display geochemical fingerprints of subduction influence, interpreted to reflect remelting of previously formed arc material ca. 750-650 Ma in age. The formation of Late Ediacaran post-collisional lavas and tuffs in southern Sinai can be understood as a consequence of upwelling of hot asthenospheric material during thinning of the previously thickened lithosphere, leading to partial melting of mafic lower crust. The presence of inherited zircons indicates crustal contamination during evolution of the volcanic successions. Our results indicate that the studied volcanic successions correlate with the Dokhan volcanics of the northern Eastern Desert of Egypt. The earlier volcanic sequence also compares well with 625-600 Ma calc-alkaline plutonic rocks in the north Eastern Desert and Sinai, whereas the younger volcanic phase displays geochemical similarities with 610-585 Ma alkaline plutonic rocks in the north Eastern Desert and Sinai.

Targeted approach to identify genetic loci associated with evolved dioxin tolerance in Atlantic Killifish (Fundulus heteroclitus)

USDA-ARS?s Scientific Manuscript database

Extreme tolerance to highly toxic dioxin-like contaminants (DLCs) has evolved independently and contemporaneously in (at least) four populations of Atlantic killifish (Fundulus heteroclitus). Surprisingly, the magnitude and phenotype of DLC tolerance is similar among these killifish populations tha...

The Evolving Military Learner Population: A Review of the Literature

ERIC Educational Resources Information Center

Ford, Kate; Vignare, Karen

2015-01-01

This literature review examines the evolving online military learner population with emphasis on current generation military learners, who are most frequently Post-9/11 veterans. The review synthesizes recent scholarly and grey literature on military learner demographics and attributes, college experiences, and academic outcomes against a backdrop…

Table-top two-color soft X-ray laser by means of Ni-like plasmas

NASA Astrophysics Data System (ADS)

Masoudnia, Leili; Ruiz-Lopez, Mabel; Bleiner, Davide

2016-04-01

Laser-produced Ni-like plasmas are known as active media for extreme ultraviolet lasing, with the flexibility to two-color lasing. Two-color laser generation is very complex at accelerator facilities. In this work, plasma lasing at the 3d94d1(J = 0) → 3d94p1(J = 1) (collisional-pumping process) and the 3d94f1(J = 1) → 3d94d1(J = 1) (photo-pumping process) transitions is studied experimentally and computationally. Several key characteristics of collisional- and photo-pumping laser, such as divergence, pointing stability, and intensity have been investigated. The measurements showed different pulse characteristics for the two lasing processes affected by plasma inhomogeneity in temperature and density. Analytical expressions of these characteristics for both collisional- and photo-pumping are derived. It is found that the plasma that maximizes the photo-pumping lasing is 20% hotter and 70% denser than the plasma that optimizes the collisional-pumping lasing. The gain of collisional pumping is ≈4 times higher than the gain for the photo-pumping. The gain lifetime is a factor of ≈5.2 larger for the monopole-pumping. Similarly, the gain thickness is a factor of ≈1.8 larger. It is also found that the gain build-up time for collisional- and photo-pumping is 0.7 ps and 0.9 ps, respectively, whereas the build-up length-scale is 11.5 μm and 6.3 μm, respectively.

Enteroaggregative Escherichia coli have evolved independently as distinct complexes within the E. coli population with varying ability to cause disease.

PubMed

Chattaway, Marie Anne; Jenkins, Claire; Rajendram, Dunstan; Cravioto, Alejandro; Talukder, Kaisar Ali; Dallman, Tim; Underwood, Anthony; Platt, Steve; Okeke, Iruka N; Wain, John

2014-01-01

Enteroaggregative E. coli (EAEC) is an established diarrhoeagenic pathotype. The association with virulence gene content and ability to cause disease has been studied but little is known about the population structure of EAEC and how this pathotype evolved. Analysis by Multi Locus Sequence Typing of 564 EAEC isolates from cases and controls in Bangladesh, Nigeria and the UK spanning the past 29 years, revealed multiple successful lineages of EAEC. The population structure of EAEC indicates some clusters are statistically associated with disease or carriage, further highlighting the heterogeneous nature of this group of organisms. Different clusters have evolved independently as a result of both mutational and recombination events; the EAEC phenotype is distributed throughout the population of E. coli.

Neutral evolution of mutational robustness

PubMed Central

van Nimwegen, Erik; Crutchfield, James P.; Huynen, Martijn

1999-01-01

We introduce and analyze a general model of a population evolving over a network of selectively neutral genotypes. We show that the population’s limit distribution on the neutral network is solely determined by the network topology and given by the principal eigenvector of the network’s adjacency matrix. Moreover, the average number of neutral mutant neighbors per individual is given by the matrix spectral radius. These results quantify the extent to which populations evolve mutational robustness—the insensitivity of the phenotype to mutations—and thus reduce genetic load. Because the average neutrality is independent of evolutionary parameters—such as mutation rate, population size, and selective advantage—one can infer global statistics of neutral network topology by using simple population data available from in vitro or in vivo evolution. Populations evolving on neutral networks of RNA secondary structures show excellent agreement with our theoretical predictions. PMID:10449760

Linking the collisional history of the main asteroid belt to its dynamical excitation and depletion

NASA Astrophysics Data System (ADS)

Bottke, William F.; Durda, Daniel D.; Nesvorný, David; Jedicke, Robert; Morbidelli, Alessandro; Vokrouhlický, David; Levison, Harold F.

2005-12-01

The main belt is believed to have originally contained an Earth mass or more of material, enough to allow the asteroids to accrete on relatively short timescales. The present-day main belt, however, only contains ˜5×10 Earth masses. Numerical simulations suggest that this mass loss can be explained by the dynamical depletion of main belt material via gravitational perturbations from planetary embryos and a newly-formed Jupiter. To explore this scenario, we combined dynamical results from Petit et al. [Petit, J. Morbidelli, A., Chambers, J., 2001. The primordial excitation and clearing of the asteroid belt. Icarus 153, 338-347] with a collisional evolution code capable of tracking how the main belt undergoes comminution and dynamical depletion over 4.6 Gyr [Bottke, W.F., Durda, D., Nesvorny, D., Jedicke, R., Morbidelli, A., Vokrouhlický, D., Levison, H., 2005. The fossilized size distribution of the main asteroid belt. Icarus 175, 111-140]. Our results were constrained by the main belt's size-frequency distribution, the number of asteroid families produced by disruption events from diameter D>100 km parent bodies over the last 3-4 Gyr, the presence of a single large impact crater on Vesta's intact basaltic crust, and the relatively constant lunar and terrestrial impactor flux over the last 3 Gyr. We used our model to set limits on the initial size of the main belt as well as Jupiter's formation time. We find the most likely formation time for Jupiter was 3.3±2.6 Myr after the onset of fragmentation in the main belt. These results are consistent with the estimated mean disk lifetime of 3 Myr predicted by Haisch et al. [Haisch, K.E., Lada, E.A., Lada, C.J., 2001. Disk frequencies and lifetimes in young clusters. Astrophys. J. 553, L153-L156]. The post-accretion main belt population, in the form of diameter D≲1000 km planetesimals, was likely to have been 160±40 times the current main belt's mass. This corresponds to 0.06-0.1 Earth masses, only a small fraction of the total mass thought to have existed in the main belt zone during planet formation. The remaining mass was most likely taken up by planetary embryos formed in the same region. Our results suggest that numerous D>200 km planetesimals disrupted early in Solar System history, but only a small fraction of their fragments survived the dynamical depletion event described above. We believe this may explain the limited presence of iron-rich M-type, olivine-rich A-type, and non-Vesta V-type asteroids in the main belt today. The collisional lifetimes determined for main belt asteroids agree with the cosmic ray exposure ages of stony meteorites and are consistent with the limited collisional evolution detected among large Koronis family members. Using the same model, we investigated the near-Earth object (NEO) population. We show the shape of the NEO size distribution is a reflection of the main belt population, with main belt asteroids driven to resonances by Yarkovsky thermal forces. We used our model of the NEO population over the last 3 Gyr, which is consistent with the current population determined by telescopic and satellite data, to explore whether the majority of small craters ( D<0.1-1 km) formed on Mercury, the Moon, and Mars were produced by primary impacts or by secondary impacts generated by ejecta from large craters. Our results suggest that most small craters formed on these worlds were a by-product of secondary rather than primary impacts.

Infrared Rydberg Transitions in B Stars.

NASA Astrophysics Data System (ADS)

Sigut, Thomas Allan Aaron

1995-01-01

The infrared solar spectrum exhibits emission lines near 12 μm from the Mg scI high-l Rydberg transitions 6g - 7h and 6h - 7i. Chang et al. (1991) demonstrated that the emission arises from small deviations in the populations of these Rydberg levels from their thermodynamic equilibrium values. In this thesis, the possible operation of this emission mechanism is investigated in the B stars by performing non-LTE radiative transfer calculations for the high-l Rydberg transitions of Mg scII and O scI. Highly realistic atomic models are employed, complete in energy levels and radiative transitions far into the Rydberg regime. For Mg scII, the collisional excitation rates are improved by computing collision strengths in a 10 state close-coupling approximation using the R-matrix method. The collisional excitation rates derived from these collisions strengths include the full effects of autoionizing resonances and have an expected accuracy of +/-10% for transitions between levels lying low in energy in the close-coupling expansion. For Mg scII, wide-ranging infrared emission is found, spanning the entire range of B spectral types. The emission is caused by the same mechanism operative in the Rydberg levels of Mg scI in the sun. Small divergences between the Rydberg departure coefficients produce rising monochromatic source functions and emission. Flux profiles of the Mg scII high-l ( Delta n = +1) transitions from n = 4 and 5 show an emission peak superposed on wider absorption trough, similar in form to the solar Mg scI lines, while for higher n, the profiles are in full emission. The strongest emission is predicted for transitions from n = 5, 6, and 7 and strongly increases for lower surface gravities where the rates of thermalizing collisions are lower. The emission strengths reach maxima of Flambda /Fc ~ 1.15 and Wlambda ~ -0.1 A. Transitions from higher n exhibit progressively lower continuum contrasts due to the steep rise with wavelength of the continuous opacity in the infrared and increased Stark broadening. The largest source of potential uncertainty affecting the emission strengths is the uncertain scale of the collisional excitation rates between the Rydberg levels. However, reasonable variations of these rates does not eliminate the emission. Although small divergences occur between the Rydberg departure coefficients of O scI, wide-ranging infrared emission is not predicted. Only small self-reversals in the cores of the high-l transitions from n = 4 and 5 are seen and then only at the lowest surface gravities. The failure of O scI to produce significant emission, or more precisely, significant Rydberg population divergences, can be attributed to the lack of strong ultraviolet photoionization rates from its lower energy levels, the increased collisional coupling between its more closely spaced Rydberg levels, and the longer wavelengths of its Rydberg transitions. Considerable uncertainty exists in the prediction of the absolute infrared line strengths of O scI due to uncertainty in the exact treatment or radiative transfer in the resonance line and in the magnitude of the collisional excitation rates among the Rydberg levels. However, these uncertainties do not alter the basic conclusion of no significant emission from the high-l Rydberg transitions of O scI in B stars.

The limits of the Bohm criterion in collisional plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Valentini, H.-B.; Kaiser, D.

2015-05-15

The sheath formation within a low-pressure collisional plasma is analysed by means of a two-fluid model. The Bohm criterion takes into account the effects of the electric field and the inertia of the ions. Numerical results yield that these effects contribute to the space charge formation, only, if the collisionality is lower than a relatively small threshold. It follows that a lower and an upper limit of the drift speed of the ions exist where the effects treated by Bohm can form a sheath. This interval becomes narrower as the collisionality increases and vanishes at the mentioned threshold. Above themore » threshold, the sheath is mainly created by collisions and the ionisation. Under these conditions, the sheath formation cannot be described by means of Bohm like criteria. In a few references, a so-called upper limit of the Bohm criterion is stated for collisional plasmas where the momentum equation of the ions is taken into account, only. However, the present paper shows that this limit results in an unrealistically steep increase of the space charge density towards the wall, and, therefore, it yields no useful limit of the Bohm velocity.« less

Diode laser measurements of linestrength and temperature-dependent lineshape parameters of H2O-, CO2-, and N2-perturbed H2O transitions near 2474 and 2482 nm

NASA Astrophysics Data System (ADS)

Goldenstein, Christopher S.; Jeffries, Jay B.; Hanson, Ronald K.

2013-11-01

Absorption lineshapes for two unresolved H2O doublets near 4029.52 and 4041.92 cm-1 were measured at high-resolution in a heated static cell using two distributed-feedback diode lasers. Measurements were acquired for H2O, CO2, and N2 perturbers over a temperature and pressure range of 650-1325 K and 2-760 Torr, respectively. Strong collisional narrowing effects were observed in CO2 and N2, but not in pure H2O. The Galatry profile was used to infer collisional-broadening and -narrowing coefficients and their respective temperature dependence for CO2 and N2 perturbers. The collisional-broadening and -narrowing coefficients for CO2 perturbers were found to decrease with increasing temperature in a similar manner. For N2 perturbers, the collisional-broadening coefficients increased with temperature while the collisional-narrowing coefficients decreased with increasing temperature. Self-broadening coefficients were inferred from Voigt profile fits and are compared with HITEMP 2010. The linestrengths of 17 H2O transitions are also reported.

Collisional cascading - The limits of population growth in low earth orbit

NASA Technical Reports Server (NTRS)

Kessler, Donald J.

1991-01-01

Random collisions between made-made objects in earth orbit will lead to a significant source of orbital debris, but there are a number of uncertainties in these models, and additional analysis and data are required to fully characterize the future environment. However, the nature of these uncertainties are such that while the future environment is uncertain, the fact that collisions will control the future environment is less uncertain. The data that already exist is sufficient to show that cascading collisions will control the future debris environment with no, or very minor increases in the current low-earth-orbit population. Two populations control this process: explosion fragments and expended rocket bodies and payloads. Practices are already changing to limit explosions in low earth orbit; it is necessary to begin limiting the number of expended rocket bodies and payloads in orbit.

Hungaria Asteroid Region Telescopic Spectral Survey (HARTSS): Stony Asteroids Abundant in the Background and Family Populations

NASA Astrophysics Data System (ADS)

Lucas, Michael P.; Emery, Joshua P.; Pinilla-Alonso, Noemi; Lindsay, Sean S.; Lorenzi, Vania

2016-10-01

The Hungaria region represents a "purgatory" for the closest, preserved samples of the material from which the terrestrial planets accreted. The Hungaria region harbors a collisional family of Xe-type asteroids, which are situated among a background of predominantly S-complex asteroids. Deciphering their surface composition may provide constraints on the nature of the primordial building blocks of the terrestrial planets. We hypothesize that planetesimals in the inner part of the primordial asteroid belt experienced partial- to full-melting and differentiation, the Hungaria region should retain any petrologically-evolved material that formed there.We have undertaken an observational campaign entitled the Hungaria Asteroid Region Telescopic Spectral Survey (HARTSS) to record near-infrared (NIR) spectra to characterize taxonomy, surface mineralogy, and potential meteorite analogs. We used NIR instruments at two ground-based facilities (NASA IRTF; TNG). Our data set includes spectra of 82 Hungaria asteroids (61 background; 21 family), 65 were observed during HARTSS. We compare S-complex background asteroids to calibrations developed via laboratory analyses of ordinary chondrites, and to our analyses (EPMA, XRD, VIS+NIR spectra) of 11 primitive achondrite (acapulcoite-lodranite clan) meteorites.We find that stony S-complex asteroids dominate the Hungaria background population (~80%). Background objects exhibit considerable spectral diversity, when quantified by spectral band parameter measurements, translates to a variety of surface compositions. Two main meteorite groups are represented within the Hungaria background: unmelted, nebular L chondrites (and/or L chondrites), and partially-melted primitive achondrites. H-chondrite mineralogies appear to be absent from the Hungaria background. Xe-type Hungaria family members exhibit spectral homogeneity, consistent with the hypothesis that the family was derived from the disruption of a parent body analogous to an enstatite achondrite (i.e., aubrite) composition. Hungaria region asteroids exhibit a full range of petrologic evolution, from nebular, unmelted ordinary chondrites, through partially-melted primitive achondrites, to fully-melted igneous aubrite meteorites.

Death and population dynamics affect mutation rate estimates and evolvability under stress in bacteria

PubMed Central

Bonhoeffer, Sebastian

2018-01-01

The stress-induced mutagenesis hypothesis postulates that in response to stress, bacteria increase their genome-wide mutation rate, in turn increasing the chances that a descendant is able to better withstand the stress. This has implications for antibiotic treatment: exposure to subinhibitory doses of antibiotics has been reported to increase bacterial mutation rates and thus probably the rate at which resistance mutations appear and lead to treatment failure. More generally, the hypothesis posits that stress increases evolvability (the ability of a population to generate adaptive genetic diversity) and thus accelerates evolution. Measuring mutation rates under stress, however, is problematic, because existing methods assume there is no death. Yet subinhibitory stress levels may induce a substantial death rate. Death events need to be compensated by extra replication to reach a given population size, thus providing more opportunities to acquire mutations. We show that ignoring death leads to a systematic overestimation of mutation rates under stress. We developed a system based on plasmid segregation that allows us to measure death and division rates simultaneously in bacterial populations. Using this system, we found that a substantial death rate occurs at the tested subinhibitory concentrations previously reported to increase mutation rate. Taking this death rate into account lowers and sometimes removes the signal for stress-induced mutagenesis. Moreover, even when antibiotics increase mutation rate, we show that subinhibitory treatments do not increase genetic diversity and evolvability, again because of effects of the antibiotics on population dynamics. We conclude that antibiotic-induced mutagenesis is overestimated because of death and that understanding evolvability under stress requires accounting for the effects of stress on population dynamics as much as on mutation rate. Our goal here is dual: we show that population dynamics and, in particular, the numbers of cell divisions are crucial but neglected parameters in the evolvability of a population, and we provide experimental and computational tools and methods to study evolvability under stress, leading to a reassessment of the magnitude and significance of the stress-induced mutagenesis paradigm. PMID:29750784

Death and population dynamics affect mutation rate estimates and evolvability under stress in bacteria.

PubMed

Frenoy, Antoine; Bonhoeffer, Sebastian

2018-05-01

The stress-induced mutagenesis hypothesis postulates that in response to stress, bacteria increase their genome-wide mutation rate, in turn increasing the chances that a descendant is able to better withstand the stress. This has implications for antibiotic treatment: exposure to subinhibitory doses of antibiotics has been reported to increase bacterial mutation rates and thus probably the rate at which resistance mutations appear and lead to treatment failure. More generally, the hypothesis posits that stress increases evolvability (the ability of a population to generate adaptive genetic diversity) and thus accelerates evolution. Measuring mutation rates under stress, however, is problematic, because existing methods assume there is no death. Yet subinhibitory stress levels may induce a substantial death rate. Death events need to be compensated by extra replication to reach a given population size, thus providing more opportunities to acquire mutations. We show that ignoring death leads to a systematic overestimation of mutation rates under stress. We developed a system based on plasmid segregation that allows us to measure death and division rates simultaneously in bacterial populations. Using this system, we found that a substantial death rate occurs at the tested subinhibitory concentrations previously reported to increase mutation rate. Taking this death rate into account lowers and sometimes removes the signal for stress-induced mutagenesis. Moreover, even when antibiotics increase mutation rate, we show that subinhibitory treatments do not increase genetic diversity and evolvability, again because of effects of the antibiotics on population dynamics. We conclude that antibiotic-induced mutagenesis is overestimated because of death and that understanding evolvability under stress requires accounting for the effects of stress on population dynamics as much as on mutation rate. Our goal here is dual: we show that population dynamics and, in particular, the numbers of cell divisions are crucial but neglected parameters in the evolvability of a population, and we provide experimental and computational tools and methods to study evolvability under stress, leading to a reassessment of the magnitude and significance of the stress-induced mutagenesis paradigm.

Jeans stability in collisional quantum dusty magnetoplasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jamil, M.; Asif, M.; Mir, Zahid

2014-09-15

Jeans instability is examined in detail in uniform dusty magnetoplasmas taking care of collisional and non-zero finite thermal effects in addition to the quantum characteristics arising through the Bohm potential and the Fermi degenerate pressure using the quantum hydrodynamic model of plasmas. It is found that the presence of the dust-lower-hybrid wave, collisional effects of plasma species, thermal effects of electrons, and the quantum mechanical effects of electrons have significance over the Jeans instability. Here, we have pointed out a new class of dissipative instability in quantum plasma regime.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Antonini, Fabio, E-mail: antonini@cita.utoronto.ca

We use N-body simulations as well as analytical techniques to study the long-term dynamical evolution of stellar black holes (BHs) at the Galactic center (GC) and to put constraints on their number and mass distribution. Starting from models that have not yet achieved a state of collisional equilibrium, we find that timescales associated with cusp regrowth can be longer than the Hubble time. Our results cast doubts on standard models that postulate high densities of BHs near the GC and motivate studies that start from initial conditions that correspond to well-defined physical models. For the first time, we consider themore » distribution of BHs in a dissipationless model for the formation of the Milky Way nuclear cluster (NC), in which massive stellar clusters merge to form a compact nucleus. We simulate the consecutive merger of ∼10 clusters containing an inner dense sub-cluster of BHs. After the formed NC is evolved for ∼5 Gyr, the BHs do form a steep central cusp, while the stellar distribution maintains properties that resemble those of the GC NC. Finally, we investigate the effect of BH perturbations on the motion of the GC S-stars as a means of constraining the number of the perturbers. We find that reproducing the quasi-thermal character of the S-star orbital eccentricities requires ≳ 1000 BHs within 0.1 pc of Sgr A*. A dissipationless formation scenario for the GC NC is consistent with this lower limit and therefore could reconcile the need for high central densities of BHs (to explain the S-stars orbits) with the 'missing-cusp' problem of the GC giant star population.« less

Charging of Interstellar Dust Grains in the out-of-equilibrium Heliosheath Plasma traced by IBEX ENAs

NASA Astrophysics Data System (ADS)

Frisch, P. C.; Ogasawara, K.; Livadiotis, G.; Slavin, J. D.; McComas, D. J.; Funsten, H. O.; Schwadron, N.; Heerikhuisen, J.

2017-12-01

Dusty bow waves are common around stars and anticipated around the heliosphere due to the deficit of low-mass interstellar dust grains in the inner heliosphere. Interstellar grains entering the heliosphere must first cross barriers of non-Maxwellian plasma in the heliosheath regions where collisional charging of grains is highly effective. IBEX measures 0.1-6 keV ENAs in the heliosheath plasma, providing an in situ sample of the heliosheath plasma thermodynamics that can be used for grain-charging calculations. Plasma in three-quarters of the sky can be described with a stationary state kappa-distribution, giving predictions for kappa, kappa-distribution temperature, and plasma density [1]. This thermodynamic description allows a more realistic evaluation of the dominant heliosheath electron and ion currents, and hence also grain gyroradii and exclusion from the heliosphere. At the highest temperatures ion collisional currents dominate grain charging; at lower temperatures collisional electron currents are more important together with the photoelectric ejection of electrons. An absence of data on the thermodynamical state of heliosheath electrons has led to the assumption of similar thermodynamic parameters for the electron and ion populations. The balance between electron, proton and photoionization currents on the grains then yield the equilibrium grain charges. Grain gyroradii calculated based on these charging currents differentiate between interstellar grains able to penetrate the heliosphere, versus those that are excluded, and allow predictions of properties of the dusty bow wave likely to be present around the heliosphere. The smallest grains are excluded and grains at the high latitude edges of the described regions tend to have systematically lower grain potentials. Grain charging calculations utilize the modeling of [2]. [1] Livadiotis et al., ApJ 734, 1 (2011). [2] Weingartner Draine, ApJSS 263 (2001)

Inelastic rate coefficients for collisions of C6H- with H2 and He

NASA Astrophysics Data System (ADS)

Walker, Kyle M.; Lique, François; Dumouchel, Fabien; Dawes, Richard

2017-04-01

The recent detection of anions in the interstellar medium has shown that they exist in a variety of astrophysical environments - circumstellar envelopes, cold dense molecular clouds and star-forming regions. Both radiative and collisional processes contribute to molecular excitation and de-excitation in these regions so that the 'local thermodynamic equilibrium' approximation, where collisions cause the gas to behave thermally, is not generally valid. Therefore, along with radiative coefficients, collisional excitation rate coefficients are needed to accurately model the anionic emission from these environments. We focus on the calculation of state-to-state rate coefficients of the C6H- molecule in its ground vibrational state in collisions with para-H2, ortho-H2 and He using new potential energy surfaces. Dynamical calculations for the pure rotational excitation of C6H- were performed for the first 11 rotational levels (up to j1 = 10) using the close-coupling method, while the coupled-states approximation was used to extend the H2 rate coefficients to j1 = 30, where j1 is the angular momentum quantum number of C6H-. State-to-state rate coefficients were obtained for temperatures ranging from 2 to 100 K. The rate coefficients for H2 collisions for Δj1 = -1 transitions are of the order of 10-10 cm3 s-1, a factor of 2 to 3 greater than those of He. Propensity rules are discussed. The collisional excitation rate coefficients produced here impact astrophysical modelling since they are required for obtaining accurate C6H- level populations and line emission for regions that contain anions.

Population trapping: The mechanism for the lost resonance lines in Pm-like ions

NASA Astrophysics Data System (ADS)

Kato, Daiji; Sakaue, Hiroyuki A.; Murakami, Izumi; Nakamura, Nobuyuki

2017-10-01

We report a population kinetics study on line emissions of the Pm-like Bi22+ performed by using a collisional-radiative (CR) model. Population rates of excited levels are analyzed to explain the population trapping in the 4f135s2 state which causes the loss of the 5s - 5p resonance lines in emission spectra. Based on the present analysis, we elucidate why the population trapping is not facilitated for a meta-stable excited level of the Sm-like Bi21+. The emission line spectra are calculated for the Pm-like isoelectronic sequence from Au18+ through W13+ and compared with experimental measurements by electron-beam-ion-traps (EBITs). Structures of the spectra are similar for all of the cases except for calculated W13+ spectra. The calculated spectra are hardly reconciled with the measured W13+ spectrum using the compact electron-beam-ion-trap (CoBIT) [Phys. Rev. A 92 (2015) 022510].

Collisional evolution - an analytical study for the nonsteady-state mass distribution

NASA Astrophysics Data System (ADS)

Martins, R. Vieira

1999-05-01

To study the collisional evolution of asteroidal groups we can use an analytical solutionfor the self-similar collision cascades. This solution is suitable to study the steady-state massdistribution of the collisional fragmentation. However, out of the steady-state conditions, thissolution is not satisfactory for some values of the collisional parameters. In fact, for some valuesfor the exponent of the mass distribution power law of an asteroidal group and its relation to theexponent of the function which describes how rocks break we arrive at singular points for theequation which describes the collisional evolution. These singularities appear since someapproximations are usually made in the laborious evaluation of many integrals that appear in theanalytical calculations. They concern the cutoff for the smallest and the largest bodies. Thesesingularities set some restrictions to the study of the analytical solution for the collisionalequation. To overcome these singularities we performed an algebraic computationconsidering the smallest and the largest bodies and we obtained the analytical expressions for theintegrals that describe the collisional evolution without restriction on the parameters. However,the new distribution is more sensitive to the values of the collisional parameters. In particular thesteady-state solution for the differential mass distribution has exponents slightly different from11⧸6 for the usual parameters in the Asteroid Belt. The sensitivity of this distribution with respectto the parameters is analyzed for the usual values in the asteroidal groups. With anexpression for the mass distribution without singularities, we can evaluate also its time evolution.We arrive at an analytical expression given by a power series of terms constituted by a smallparameter multiplied by the mass to an exponent, which depends on the initial power lawdistribution. This expression is a formal solution for the equation which describes the collisionalevolution. Furthermore, the first-order term for this solution is the time rate of the distribution atthe initial time. In particular the solution shows the fundamental importance played by theexponent of the power law initial condition in the evolution of the system.

Linear tearing mode stability equations for a low collisionality toroidal plasma

NASA Astrophysics Data System (ADS)

Connor, J. W.; Hastie, R. J.; Helander, P.

2009-01-01

Tearing mode stability is normally analysed using MHD or two-fluid Braginskii plasma models. However for present, or future, large hot tokamaks like JET or ITER the collisionality is such as to place them in the banana regime. Here we develop a linear stability theory for the resonant layer physics appropriate to such a regime. The outcome is a set of 'fluid' equations whose coefficients encapsulate all neoclassical physics: the neoclassical Ohm's law, enhanced ion inertia, cross-field transport of particles, heat and momentum all play a role. While earlier treatments have also addressed this type of neoclassical physics we differ in incorporating the more physically relevant 'semi-collisional fluid' regime previously considered in cylindrical geometry; semi-collisional effects tend to screen the resonant surface from the perturbed magnetic field, preventing reconnection. Furthermore we also include thermal physics, which may modify the results. While this electron description is of wide relevance and validity, the fluid treatment of the ions requires the ion banana orbit width to be less than the semi-collisional electron layer. This limits the application of the present theory to low magnetic shear—however, this is highly relevant to the sawtooth instability—or to colder ions. The outcome of the calculation is a set of one-dimensional radial differential equations of rather high order. However, various simplifications that reduce the computational task of solving these are discussed. In the collisional regime, when the set reduces to a single second-order differential equation, the theory extends previous work by Hahm et al (1988 Phys. Fluids 31 3709) to include diamagnetic-type effects arising from plasma gradients, both in Ohm's law and the ion inertia term of the vorticity equation. The more relevant semi-collisional regime pertaining to JET or ITER, is described by a pair of second-order differential equations, extending the cylindrical equations of Drake et al (1983 Phys. Fluids 26 2509) to toroidal geometry.

Paleozoic tectonics of the Ouachita Orogen through Nd isotopes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gleason, J.D.; Patchett, P.J.; Dickinson, W.R.

1992-01-01

A combined isotopic and trace-element study of the Late Paleozoic Ouachita Orogenic belt has the following goals: (1) define changing provenance of Ouachita sedimentary systems throughout the Paleozoic; (2) constrain sources feeding into the Ouachita flysch trough during the Late Paleozoic; (3) isolate the geochemical signature of proposed colliding terranes to the south; (4) build a data base to compare with possible Ouachita System equivalents in Mexico. The ultimate aim is to constrain the tectonic setting of the southern margin of North America during the Paleozoic, with particular emphasis on collisional events leading to the final suturing of Pangea. Ndmore » isotopic data identify 3 distinct groups: (1) Ordovician passive margin sequence; (2) Carboniferous proto-flysch (Stanley Fm.), main flysch (Jackfork and Atoka Fms.) and molasse (foreland Atoka Fm.); (3) Mississippian ash-flow tuffs. The authors interpret the Ordovician signature to be essentially all craton-derived, whereas the Carboniferous signature reflects mixed sources from the craton plus orogenic sources to the east and possibly the south, including the evolving Appalachian Orogen. The proposed southern source is revealed by the tuffs to be too old and evolved to be a juvenile island arc terrane. They interpret the tuffs to have been erupted in a continental margin arc-type setting. Surprisingly, the foreland molasse sequence is indistinguishable from the main trough flysch sequence, suggesting the Ouachita trough and the craton were both inundated with sediment of a single homogenized isotopic signature during the Late Carboniferous. The possibility that Carboniferous-type sedimentary dispersal patterns began as early as the Silurian has important implications for the tectonics and paleogeography of the evolving Appalachian-Ouachita Orogenic System.« less

The Roles of Standing Genetic Variation and Evolutionary History in Determining the Evolvability of Anti-Predator Strategies

PubMed Central

Dworkin, Ian; Wagner, Aaron P.

2014-01-01

Standing genetic variation and the historical environment in which that variation arises (evolutionary history) are both potentially significant determinants of a population's capacity for evolutionary response to a changing environment. Using the open-ended digital evolution software Avida, we evaluated the relative importance of these two factors in influencing evolutionary trajectories in the face of sudden environmental change. We examined how historical exposure to predation pressures, different levels of genetic variation, and combinations of the two, affected the evolvability of anti-predator strategies and competitive abilities in the presence or absence of threats from new, invasive predator populations. We show that while standing genetic variation plays some role in determining evolutionary responses, evolutionary history has the greater influence on a population's capacity to evolve anti-predator traits, i.e. traits effective against novel predators. This adaptability likely reflects the relative ease of repurposing existing, relevant genes and traits, and the broader potential value of the generation and maintenance of adaptively flexible traits in evolving populations. PMID:24955847

Post-collisional Ediacaran volcanism in oriental Ramada Plateau, southern Brazil

NASA Astrophysics Data System (ADS)

Matté, Vinícius; Sommer, Carlos Augusto; Lima, Evandro Fernandes de; Philipp, Ruy Paulo; Basei, Miguel Angelo Stipp

2016-11-01

Ediacaran volcanic sequences in southernmost Brazil are related to intense post-collisional magmatism of the Brasiliano Orogeny. A portion of this volcanism occurs in the oriental Ramada Plateau located in the center part of the Rio Grande Sul State and is correlated with Hilário and Acampamento Velho formations. The first one is represented dominantly by lava flows and dikes of shoshonitic andesitic composition, besides of volcanogenic sedimentary deposits. The acid rocks of the Acampamento Velho Formation are expressive in the area, comprising high-silica ignimbrites, usually densely welded. Dikes and domes are common too and rhyolitic lava flows occur at the top and intercalated to ignimbrites in the middle of the sequence. The acid rock association has a sodic alkaline affinity. In this unit we mapped a subvolcanic sill of trachyte showing evidence for magma mixing with the rhyolitic magma. It has sodic alkaline affinity, and FeOt/FeO + MgO ratios and agpaitic index lower than those recorded in the rhyolites/ignimbrites. The Acampamento Velho Formation includes in this area, subordinately, basalts as àà flows and dikes intercalated with acid rocks. They have sodic alkaline nature and characteristics of intraplate basic rocks. New zircon U-Pb dating indicates crystallization age of 560 ± 2 Ma in a densely welded ignimbrite, 560 ± 14 Ma for a mafic trachyte and 562 ± 2 Ma for a subvolcanic rhyolite. The sodic alkaline rocks in this region evolved by fractional crystallization processes and magma mixing with major crustal contribution at approximately 560 Ma. The chemical characteristics are similar to those of A-type granites associated with Neoproterozoic post-collision magmatism in the Sul-rio-grandense Shield.

Experimental melting of phlogopite-bearing mantle at 1 GPa: Implications for potassic magmatism

NASA Astrophysics Data System (ADS)

Condamine, Pierre; Médard, Etienne

2014-07-01

We have experimentally investigated the fluid-absent melting of a phlogopite peridotite at 1.0 GPa (1000-1300 °C) to understand the source of K2O- and SiO2-rich magmas that occur in continental, post-collisional and island arc settings. Using a new extraction technique specially developed for hydrous conditions combined with iterative sandwich experiments, we have determined the composition of low- to high-degree melts (Φ=1.4 to 24.2 wt.%) of metasomatized lherzolite and harzburgite sources. Due to small amounts of adsorbed water in the starting material, amphibole crystallized at the lowest investigated temperatures. Amphibole breaks down at 1050-1075 °C, while phlogopite-breakdown occurs at 1150-1200 °C. This last temperature is higher than the previously determined in a mantle assemblage, due to the presence of stabilizing F and Ti. Phlogopite-lherzolite melts incongruently according to the continuous reaction: 0.49 phlogopite + 0.56 orthopyroxene + 0.47 clinopyroxene + 0.05 spinel = 0.58 olivine + 1.00 melt. In the phlogopite-harzburgite, the reaction is: 0.70 phlogopite + 1.24 orthopyroxene + 0.05 spinel = 0.99 olivine + 1.00 melt. The K2O content of water-undersaturated melts in equilibrium with residual phlogopite is buffered, depending on the source fertility: from ∼3.9 wt.% in lherzolite to ∼6.7 wt.% in harzburgite. Primary melts are silica-saturated and evolve from trachyte to basaltic andesite (63.5-52.1 wt.% SiO2) with increasing temperature. Calculations indicate that such silica-rich melts can readily be extracted from their mantle source, due to their low viscosity. Our results confirm that potassic, silica-rich magmas described worldwide in post-collisional settings are generated by melting of a metasomatized phlogopite-bearing mantle in the spinel stability field.

THE INNER COMA OF COMET C/2012 S1 (ISON) AT 0.53 AU AND 0.35 AU FROM THE SUN

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bonev, Boncho P.; Villanueva, Geronimo L.; Paganini, Lucas

2014-11-20

Using long-slit spectroscopy at the NASA Infrared Telescope Facility, we extracted H{sub 2}O production rates and spatial profiles of gas rotational temperature and molecular column abundance in comet C/2012 S1 ISON, observed at heliocentric distances of 0.53 and 0.35 AU. These measurements uniquely probed the physical environment in the inner collisional coma of this comet during its first (and last) approach to the Sun since being emplaced in the Oort Cloud some 4.5 billion years ago. Our observations revealed a comet evolving on various timescales, both over hours and days. At 0.35 AU, ISON showed a considerable decrease in water production ratemore » in less than 2 hr, likely declining from a major outburst. Our measured temperature spatial distributions reflect the competition between the processes that cause heating and cooling in the coma, and also provide insight about the prevalent mechanism(s) of releasing gas-phase H{sub 2}O. The observed temperatures suggest that the comet was likely ejecting icy material continuously, which sublimated in the coma and heated the ambient gas, augmenting fast H-atoms produced by H{sub 2}O photolysis. ISON adds to the very limited sample of comets for which spatial-spectral studies of water temperatures have been conducted. These studies are now feasible and can be extended to comets having a variety of gas production rates. Continued synergy of such observations with both space missions like Rosetta and with physical models is strongly encouraged in order to gain a deeper understanding of the processes in the inner collisional zone of the cometary coma.« less

Rotational level-dependent collisional broadening and line shift of the A2Sigma(+)-X2Pi (1,0) band of OH in hydrogen-air combustion gases

NASA Technical Reports Server (NTRS)

Kessler, W. J.; Allen, M. G.; Davis, S. J.

1993-01-01

Measurements of the collisional broadening and line shift of the (1,0) band of the A2Sigma(+)-X2Pi system of OH are reported in atmospheric pressure hydrogen-air combustion gases. The measurements were made using a single-mode, narrow linewidth, frequency-doubled ring dye laser operating near 283 nm. The OH was generated in the combustion gases of a flat flame H2-air burner. Collisional broadening parameters for equilibrium mixtures of H2, O2, H2O, and N2 were obtained spanning a range of fuel/air equivalence ratios from 0.6 to 1.6 and temperatures from 1500 to 2050 K. Measurements were obtained spanning rotational quantum numbers from 4.5 to 16.5. The collision induced frequency shift was determined to be 0.1 that of the collisional broadening.

An experimental study of OH(A2Σ+) + H2: Electronic quenching, rotational energy transfer, and collisional depolarization

NASA Astrophysics Data System (ADS)

Brouard, M.; Lawlor, J.; McCrudden, G.; Perkins, T.; Seamons, S. A.; Stevenson, P.; Chadwick, H.; Aoiz, F. J.

2017-06-01

Zeeman quantum beat spectroscopy has been used to determine the thermal (300 K) rate constants for electronic quenching, rotational energy transfer, and collisional depolarization of OH(A2Σ+) by H2. Cross sections for both the collisional disorientation and collisional disalignment of the angular momentum in the OH(A2Σ+) radical are reported. The experimental results for OH(A2Σ+) + H2 are compared to previous work on the OH(A2Σ+) + He and Ar systems. Further comparisons are also made to the OH(A2Σ+) + Kr system, which has been shown to display significant non-adiabatic dynamics. The OH(A2Σ+) + H2 experimental data reveal that collisions that survive the electronic quenching process are highly depolarizing, reflecting the deep potential energy wells that exist on the excited electronic state surface.

Radiative and collisional jet energy loss in the quark-gluon plasma at the BNL relativistic heavy ion collider.

PubMed

Qin, Guang-You; Ruppert, Jörg; Gale, Charles; Jeon, Sangyong; Moore, Guy D; Mustafa, Munshi G

2008-02-22

We calculate and compare bremsstrahlung and collisional energy loss of hard partons traversing a quark-gluon plasma. Our treatment of both processes is complete at leading order in the coupling and accounts for the probabilistic nature of the jet energy loss. We find that the nuclear modification factor R(AA) for neutral pi(0) production in heavy ion collisions is sensitive to the inclusion of collisional and radiative energy loss contributions while the averaged energy loss only slightly increases if collisional energy loss is included for parent parton energies E>T. These results are important for the understanding of jet quenching in Au+Au collisions at 200A GeV at the Relativistic Heavy Ion Collider (RHIC). Comparison with data is performed applying the energy loss calculation to a relativistic ideal (3+1)-dimensional hydrodynamic description of the thermalized medium formed at RHIC.

Experimental characterization of a transition from collisionless to collisional interaction between head-on-merging supersonic plasma jets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moser, Auna L., E-mail: mosera@fusion.gat.com; Hsu, Scott C., E-mail: scotthsu@lanl.gov

We present results from experiments on the head-on merging of two supersonic plasma jets in an initially collisionless regime for the counter-streaming ions. The plasma jets are of either an argon/impurity or hydrogen/impurity mixture and are produced by pulsed-power-driven railguns. Based on time- and space-resolved fast-imaging, multi-chord interferometry, and survey-spectroscopy measurements of the overlapping region between the merging jets, we observe that the jets initially interpenetrate, consistent with calculated inter-jet ion collision lengths, which are long. As the jets interpenetrate, a rising mean-charge state causes a rapid decrease in the inter-jet ion collision length. Finally, the interaction becomes collisional andmore » the jets stagnate, eventually producing structures consistent with collisional shocks. These experimental observations can aid in the validation of plasma collisionality and ionization models for plasmas with complex equations of state.« less

Ion mobility studies of carbohydrates as group I adducts: isomer specific collisional cross section dependence on metal ion radius.

PubMed

Huang, Yuting; Dodds, Eric D

2013-10-15

Carbohydrates play numerous critical roles in biological systems. Characterization of oligosaccharide structures is essential to a complete understanding of their functions in biological processes; nevertheless, their structural determination remains challenging in part due to isomerism. Ion mobility spectrometry provides the means to resolve gas phase ions on the basis of their shape-to-charge ratios, thus providing significant potential for separation and differentiation of carbohydrate isomers. Here, we report on the determination of collisional cross sections for four groups of isomeric carbohydrates (including five isomeric disaccharides, four isomeric trisaccharides, two isomeric pentasaccharides, and two isomeric hexasaccharides) as their group I metal ion adducts (i.e., [M + Li](+), [M + Na](+), [M + K](+), [M + Rb](+), and [M + Cs](+)). In all, 65 collisional cross sections were measured, the great majority of which have not been previously reported. As anticipated, the collisional cross sections of the carbohydrate metal ion adducts generally increase with increasing metal ion radius; however, the collisional cross sections were found to scale with the group I cation size in isomer specific manners. Such measurements are of substantial analytical value, as they illustrate how the selection of charge carrier influences carbohydrate ion mobility determinations. For example, certain pairs of isomeric carbohydrates assume unique collisional cross sections upon binding one metal ion, but not another. On the whole, these data suggest a role for the charge carrier as a probe of carbohydrate structure and thus have significant implications for the continued development and application of ion mobility spectrometry for the distinction and resolution of isomeric carbohydrates.

Spatial nonuniformity of electron energy in a microwave atmospheric-pressure microplasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu Liguo; Institute of Fluid Physics, China Academy of Engineering Physics, Mianyang, Sichuan 621900; Zhang Zhibo

The characteristics of the electron energy in a microwave atmospheric-pressure argon microplasma are investigated by a spatially resolved optical emission spectroscopy. By adding tiny amount of xenon (<1 ppm) as tracer gas into the argon discharge, it is found that the spatial distribution of the electrons with energy >8.3 eV is quite different from that of the electrons with energy >11.5 eV. Spatial distribution of the population ratio between 4p and 5p levels of Ar atom is also determined. Furthermore, with a collisional-radiative model, it is found that the spatial variation of this population ratio is mainly attributed to themore » spatial nonuniformity of the effective electron temperature.« less

Investigation of Kibble-Zurek Quench Dynamics in a Spin-1 Ferromagnetic BEC

NASA Astrophysics Data System (ADS)

Anquez, Martin; Robbins, Bryce; Hoang, Thai; Yang, Xiaoyun; Land, Benjamin; Hamley, Christopher; Chapman, Michael

2014-05-01

We study the temporal evolution of spin populations in small spin-1 87Rb condensates following a slow quench. A ferromagnetic spin-1 BEC exhibits a second-order gapless (quantum) phase transition due to a competition between the magnetic and collisional spin interaction energies. The dynamics of slow quenches through the critical point are predicted to exhibit universal power-law scaling as a function of quench speed. In spatially extended condensates, these excitations are revealed as spatial spin domains. In small condensates, the excitations are manifest in the temporal evolution of the spin populations, illustrating a Kibble-Zurek type scaling. We will present the results of our investigation and compare them to full quantum simulations of the system.

Accretion of Interplanetary Dust Particles by the Earth

NASA Astrophysics Data System (ADS)

Kortenkamp, Stephen J.; Dermott, Stanley F.

1998-10-01

Analyses of hypervelocity micrometeoroid impact craters preserved in lunar material and on the panels of the Long Duration Exposure Facility (LDEF) indicate that each year Earth accretes about 3 × 107kg of interplanetary dust particles (IDPs) from the zodiacal cloud (E. Grünet al.1985,Astron. Astrophys.286, 915-924; S. G. Love and D. E. Brownlee, 1993,Science262, 550-553). The size distributions of these lunar and LDEF craters indicate that the mass distribution of IDPs encountering Earth peaks at about 200 μm diameter. This particle-size cutoff may be indicative of collisionally evolved asteroidal dust, where the collisional lifetime of dust particles larger than ∼100 μm is shorter than the time required for their orbits to decay under Poynting-Robertson light drag from the asteroid belt to Earth (B. Å. S. Gustafson, 1994,Annu. Rev. Earth Planet. Sci.22, 553-595). Additionally, analyses of IDPs collected from the stratosphere by high-flying aircraft reveal a diversity in chemical composition which is even narrower than that of the meteorites (G. J. Flynn, 1995,Nature376, 114). Together these findings suggest that IDPs present in the atmosphere and our collections may originate from very limited sources in the asteroid belt. The most abundant sources of dust to be unambiguously linked to the zodiacal cloud are the three asteroid families Eos, Themis, and Koronis-the progenitors of the ten-degree and low-latitude dust bands discovered by the Infrared Astronomical Satellite in 1984. We use direct numerical integration of the full equations of motion to model the orbital evolution of dust particles from these three families as well as from other nonfamily asteroids and from the population of known short period comets. Our simulations include gravitational perturbations from the planets, radiation pressure, and solar wind drag. We find that a large, and perhaps the dominant, fraction of the IDPs accreted by Earth comes from the asteroid families Eos, Themis, and Koronis and that probably fewer than 25% of accreted IDPs come from comets. We also find a seasonal variation in the distribution of ascending nodes of the Themis and Koronis dust particle orbits near Earth. Earth-orbiting instruments utilizing aero-gels could exploit these seasonal variations to collect and return intact samples of these two asteroid families. Finally, we demonstrate how the long-term accretion rate of asteroidal dust from all sources should be anti-correlated with Earth's changing orbital eccentricity.

Hard Collisions in Rubidium using Sub-Doppler Spectroscopy

DTIC Science & Technology

2010-03-01

γdiff and the loss due to electronic collisions γdisch can be ignored in this work. The collisional rate γcoll can also be ignored because the quenching ...rate for ground state rubidium is very, very small. Another way to say it, it takes significant energy (very high temperatures) for 14 quenching of the...component fiso = relative natural abundance fF ′′ = statistical distribution of population among F” states = (2F ′′+1)e −E(F ′′) kBTP F”(2F ′′+1)e

In-situ Plasma Analysis of Ion Kinetics in the Solar Wind and Hermean Magnetosphere

NASA Astrophysics Data System (ADS)

Tracy, Patrick J.

The heating of the solar wind and its interaction with the unique planetary magnetosphere of Mercury is the primary focus of this work. The first aspect of this study focused on the heavy ion population of the solar wind (A > 4 amu), and how well the signature of the heating process responsible for creating the solar wind is preserved in this heavy ion population. We found that this signature in the heavy ion population is primarily erased (thermalized) via Coulomb collisional interactions with solar wind protons. The heavy ions observed in collisionally young solar wind reveal a clear, stable dependence on mass, along with non-thermal heating that is not in agreement with current predictions based on turbulent transport and kinetic dissipation. Due to its weak magnetic dipole, the solar wind can impinge on the surface of Mercury, one of the processes contributing to the desorption of neutrals and, through ionization, ions that make up the planet's exosphere. Differentiating between surface mechanisms and analyzing magnetospheric plasma dynamics requires the quantification of a variety of ion species. A detailed forward model and a robust statistical method were created to identify new ion signatures in the measurement space of the FIPS instrument, formerly orbiting Mercury onboard the MESSENGER spacecraft. The recovery of new heavy ions species, including Al, Ne, Si, and Mg, along with tentative recoveries of S, Ar, K, and C, enable in depth studies of the plasma dynamics in the Hermean magnetosphere. The interaction of the solar wind with the bow shock of the Hermean magnetosphere leads to the creation of a foreshock region. New tools and methods were created to enable the analysis of the diffuse and Field Aligned Beam (FAB) populations in unique parameter regime of the Hermean foreshock. One result suggests that the energization process for the observed FABs can be explained by Shock Drift Acceleration, and not limited by the small spatial size of Mercury's bow shock. Analysis of diffuse populations shows that a connection time limited diffusive shock acceleration is likely responsible for the behavior of the observed energy distributions.

Higher rates of sex evolve in spatially heterogeneous environments.

PubMed

Becks, Lutz; Agrawal, Aneil F

2010-11-04

The evolution and maintenance of sexual reproduction has puzzled biologists for decades. Although this field is rich in hypotheses, experimental evidence is scarce. Some important experiments have demonstrated differences in evolutionary rates between sexual and asexual populations; other experiments have documented evolutionary changes in phenomena related to genetic mixing, such as recombination and selfing. However, direct experiments of the evolution of sex within populations are extremely rare (but see ref. 12). Here we use the rotifer, Brachionus calyciflorus, which is capable of both sexual and asexual reproduction, to test recent theory predicting that there is more opportunity for sex to evolve in spatially heterogeneous environments. Replicated experimental populations of rotifers were maintained in homogeneous environments, composed of either high- or low-quality food habitats, or in heterogeneous environments that consisted of a mix of the two habitats. For populations maintained in either type of homogeneous environment, the rate of sex evolves rapidly towards zero. In contrast, higher rates of sex evolve in populations experiencing spatially heterogeneous environments. The data indicate that the higher level of sex observed under heterogeneity is not due to sex being less costly or selection against sex being less efficient; rather sex is sufficiently advantageous in heterogeneous environments to overwhelm its inherent costs. Counter to some alternative theories for the evolution of sex, there is no evidence that genetic drift plays any part in the evolution of sex in these populations.

Additive genetic variation and evolvability of a multivariate trait can be increased by epistatic gene action.

PubMed

Griswold, Cortland K

2015-12-21

Epistatic gene action occurs when mutations or alleles interact to produce a phenotype. Theoretically and empirically it is of interest to know whether gene interactions can facilitate the evolution of diversity. In this paper, we explore how epistatic gene action affects the additive genetic component or heritable component of multivariate trait variation, as well as how epistatic gene action affects the evolvability of multivariate traits. The analysis involves a sexually reproducing and recombining population. Our results indicate that under stabilizing selection conditions a population with a mixed additive and epistatic genetic architecture can have greater multivariate additive genetic variation and evolvability than a population with a purely additive genetic architecture. That greater multivariate additive genetic variation can occur with epistasis is in contrast to previous theory that indicated univariate additive genetic variation is decreased with epistasis under stabilizing selection conditions. In a multivariate setting, epistasis leads to less relative covariance among individuals in their genotypic, as well as their breeding values, which facilitates the maintenance of additive genetic variation and increases a population׳s evolvability. Our analysis involves linking the combinatorial nature of epistatic genetic effects to the ancestral graph structure of a population to provide insight into the consequences of epistasis on multivariate trait variation and evolution. Copyright © 2015 Elsevier Ltd. All rights reserved.

Collisional Ion and Electron Scale Gyrokinetic Simulations in the Tokamak Pedestal

NASA Astrophysics Data System (ADS)

Belli, E. A.; Candy, J.; Snyder, P. B.

2016-10-01

A new gyrokinetic solver, CGYRO, has been developed for precise studies of high collisionality regimes, such as the H-mode pedestal and L-mode edge. Building on GYRO and NEO, CGYRO uses the same velocity-space coordinates as NEO to optimize the accuracy of the collision dynamics and allow for advanced operators beyond the standard Lorentz pitch-angle scattering model. These advanced operators include energy diffusion and finite-FLR collisional effects. The code is optimized for multiscale (coupled electron and ion turbulence scales) simulations, employing a new spatial discretization and array distribution scheme that targets scalability on next-generation (exascale) HPC systems. In this work, CGYRO is used to study the complex spectrum of modes in the pedestal region. The onset of the linear KBM with full collisional effects is assessed to develop an improved KBM/RBM model for EPED. The analysis is extended to high k to explore the role of electron-scale (ETG-range) physics. Comparisons with new analytic collisional theories are made. Inclusion of sonic toroidal rotation (including full centrifugal effects) for studies including heavy wall impurities is also reported. Work supported in part by the US DOE under DE-FC02-06ER54873 and DE-FC02-08ER54963.

Debris Discs: Modeling/theory review

NASA Astrophysics Data System (ADS)

Thébault, P.

2012-03-01

An impressive amount of photometric, spectroscopic and imaging observations of circumstellar debris discs has been accumulated over the past 3 decades, revealing that they come in all shapes and flavours, from young post-planet-formation systems like Beta-Pic to much older ones like Vega. What we see in these systems are small grains, which are probably only the tip of the iceberg of a vast population of larger (undetectable) collisionally-eroding bodies, leftover from the planet-formation process. Understanding the spatial structure, physical properties, origin and evolution of this dust is of crucial importance, as it is our only window into what is going on in these systems. Dust can be used as a tracer of the distribution of their collisional progenitors and of possible hidden massive pertubers, but can also allow to derive valuable information about the disc's total mass, size distribution or chemical composition. I will review the state of the art in numerical models of debris disc, and present some important issues that are explored by current modelling efforts: planet-disc interactions, link between cold (i.e. Herschel-observed) and hot discs, effect of binarity, transient versus continuous processes, etc. I will finally present some possible perspectives for the development of future models.

Nonlinear regime of electrostatic waves propagation in presence of electron-electron collisions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pezzi, Oreste; Valentini, Francesco; Veltri, Pierluigi

2015-04-15

The effects are presented of including electron-electron collisions in self-consistent Eulerian simulations of electrostatic wave propagation in nonlinear regime. The electron-electron collisions are approximately modeled through the full three-dimensional Dougherty collisional operator [J. P. Dougherty, Phys. Fluids 7, 1788 (1964)]; this allows the elimination of unphysical byproducts due to reduced dimensionality in velocity space. The effects of non-zero collisionality are discussed in the nonlinear regime of the symmetric bump-on-tail instability and in the propagation of the so-called kinetic electrostatic electron nonlinear (KEEN) waves [T. W. Johnston et al., Phys. Plasmas 16, 042105 (2009)]. For both cases, it is shown howmore » collisions work to destroy the phase-space structures created by particle trapping effects and to damp the wave amplitude, as the system returns to the thermal equilibrium. In particular, for the case of the KEEN waves, once collisions have smoothed out the trapped particle population which sustains the KEEN fluctuations, additional oscillations at the Langmuir frequency are observed on the fundamental electric field spectral component, whose amplitude decays in time at the usual collisionless linear Landau damping rate.« less

Dynamical and collisional evolution of Halley-type comets

NASA Astrophysics Data System (ADS)

van der Helm, E.; Jeffers, S. V.

2012-03-01

The number of observed Halley-type comets is hundreds of times less than predicted by models (Levison, H.F., Dones, L., Duncan, M.J. [2001]. Astron. J. 121, 2253-2267). In this paper we investigate the impact of collisions with planetesimals on the evolution of Halley-type comets. First we compute the dynamical evolution of a sub-set of 21 comets using the MERCURY integrator package over 100 Myr. The dynamical lifetime is determined to be of the order of 105-106 years in agreement with previous work. The collisional probability of Halley-type comets colliding with known asteroids, a simulated population of Kuiper-belt objects, and planets, is calculated using a modified, Öpik-based collision code. Our results show that the catastrophic disruption of the cometary nucleus has a very low probability of occurring, and disruption through cumulative minor impacts is concluded to be negligible. The dust mantle formed from ejected material falling back to the comet’s surface is calculated to be less than a few centimeters thick, which is insignificant compared to the mantle formed by volatile depletion, while planetary encounters were found to be a negligible disruption mechanism.

Hyperfine excitation of C2H and C2D by para-H2

NASA Astrophysics Data System (ADS)

Dumouchel, Fabien; Lique, François; Spielfiedel, Annie; Feautrier, Nicole

2017-10-01

The [C2H]/[C2D] abundance ratio is a useful tool to explore the physical and chemical conditions of cold molecular clouds. Hence, an accurate determination of both the C2H and C2D abundances is of fundamental interest. Due to the low density of the interstellar medium, the population of the energy levels of the molecules is not at local thermodynamical equilibrium. Thus, the accurate modelling of the emission spectra requires the calculation of collisional rate coefficients with the most abundant interstellar species. Hence, we provide rate coefficients for the hyperfine excitation of C2H and C2D by para-H2(j=0), the most abundant collisional partner in cold molecular clouds. State-to-state rate coefficients between the lowest levels were computed for temperatures ranging from 5 to 80 K. For both isotopologues, the Δj = ΔF propensity rule is observed. The comparison between C2H and C2D rate coefficients shows that differences by up to a factor of two exist, mainly for Δj = ΔN = 1 transitions. The new rate coefficients will significantly help in the interpretation of recent observed spectra.

Experimental evolution under hyper-promiscuity in Drosophila melanogaster.

PubMed

Perry, Jennifer C; Joag, Richa; Hosken, David J; Wedell, Nina; Radwan, Jacek; Wigby, Stuart

2016-06-16

The number of partners that individuals mate with over their lifetime is a defining feature of mating systems, and variation in mate number is thought to be a major driver of sexual evolution. Although previous research has investigated the evolutionary consequences of reductions in the number of mates, we know little about the costs and benefits of increased numbers of mates. Here, we use a genetic manipulation of mating frequency in Drosophila melanogaster to create a novel, highly promiscuous mating system. We generated D. melanogaster populations in which flies were deficient for the sex peptide receptor (SPR) gene - resulting in SPR- females that mated more frequently - and genetically-matched control populations, and allowed them to evolve for 55 generations. At several time-points during this experimental evolution, we assayed behavioural, morphological and transcriptional reproductive phenotypes expected to evolve in response to increased population mating frequencies. We found that males from the high mating frequency SPR- populations evolved decreased ability to inhibit the receptivity of their mates and decreased copulation duration, in line with predictions of decreased per-mating investment with increased sperm competition. Unexpectedly, SPR- population males also evolved weakly increased sex peptide (SP) gene expression. Males from SPR- populations initially (i.e., before experimental evolution) exhibited more frequent courtship and faster time until mating relative to controls, but over evolutionary time these differences diminished or reversed. In response to experimentally increased mating frequency, SPR- males evolved behavioural responses consistent with decreased male post-copulatory investment at each mating and decreased overall pre-copulatory performance. The trend towards increased SP gene expression might plausibly relate to functional differences in the two domains of the SP protein. Our study highlights the utility of genetic manipulations of animal social and sexual environments coupled with experimental evolution.

Evolution of kin recognition mechanisms in a fish.

PubMed

Hain, Timothy J A; Garner, Shawn R; Ramnarine, Indar W; Neff, Bryan D

2017-03-01

Both selection and phylogenetic history can influence the evolution of phenotypic traits. Here we used recently characterized variation in kin recognition mechanisms among six guppy populations to explore the phylogenetic history of this trait. Guppies can use two different kin recognition mechanisms: either phenotype matching, in which individuals are identified based on comparison with a recognition template, or familiarity, in which individuals are remembered based on previous interactions. Across the six populations, we identified four transitions in recognition mechanism: phenotype matching evolved once and was subsequently lost in a single population, whereas familiarity evolved twice. Based on a molecular clock, these transitions occurred among populations that had diverged on a timescale of hundreds of thousands of years, which is two orders of magnitude faster than previously documented transitions in recognition mechanisms. A randomization test provided no evidence that recognition mechanisms were constrained by phylogeny, suggesting that recognition mechanisms have the capacity to evolve rapidly, although the specific selection pressures that may be contributing to variation in recognition mechanisms across populations remain unknown.

Evolution of antibiotic resistance in biofilm and planktonic P. aeruginosa populations exposed to sub-inhibitory levels of ciprofloxacin.

PubMed

Ahmed, Marwa N; Porse, Andreas; Sommer, Morten Otto Alexander; Høiby, Niels; Ciofu, Oana

2018-05-14

The opportunistic Gram-negative pathogen Pseudomonas aeruginosa , known for its intrinsic and acquired antibiotic resistance, has a notorious ability to form biofilms, which often facilitate chronic infections. The evolutionary paths to antibiotic resistance have mainly been investigated in planktonic cultures and are less studied in biofilms. We experimentally evolved P. aeruginosa PAO1 colony-biofilms and stationary-phase planktonic cultures for seven passages in the presence of sub-inhibitory levels (0.1 mg/L) of ciprofloxacin (CIP) and performed a genotypic (whole bacterial population sequencing) and phenotypic assessment of the populations. We observed a higher proportion of CIP resistance in the CIP-evolved biofilm populations compared to planktonic populations exposed to the same drug concentrations. However, the minimal inhibitory concentrations (MICs) of ciprofloxacin were lower in CIP-resistant isolates selected from biofilm population compared to the MICs of CIP-resistant isolates from the planktonic cultures. We found common evolutionary trajectories between the different lineages, with mutations in known CIP resistance determinants as well as growth condition-dependent adaptations. A general trend towards a reduction in type IV-pili dependent motility (twitching) in CIP-evolved populations, and towards loss of virulence associated traits in the populations evolved in the absence of antibiotic, was observed. In conclusion, our data indicate that biofilms facilitate the development of low-level mutational resistance, probably due to the lower effective drug exposure compared to planktonic cultures. These results provide a framework for the selection process of resistant variants and the evolutionary mechanisms in the two different growth conditions. Copyright © 2018 American Society for Microbiology.

The evolution of distributed sensing and collective computation in animal populations

PubMed Central

Hein, Andrew M; Rosenthal, Sara Brin; Hagstrom, George I; Berdahl, Andrew; Torney, Colin J; Couzin, Iain D

2015-01-01

Many animal groups exhibit rapid, coordinated collective motion. Yet, the evolutionary forces that cause such collective responses to evolve are poorly understood. Here, we develop analytical methods and evolutionary simulations based on experimental data from schooling fish. We use these methods to investigate how populations evolve within unpredictable, time-varying resource environments. We show that populations evolve toward a distinctive regime in behavioral phenotype space, where small responses of individuals to local environmental cues cause spontaneous changes in the collective state of groups. These changes resemble phase transitions in physical systems. Through these transitions, individuals evolve the emergent capacity to sense and respond to resource gradients (i.e. individuals perceive gradients via social interactions, rather than sensing gradients directly), and to allocate themselves among distinct, distant resource patches. Our results yield new insight into how natural selection, acting on selfish individuals, results in the highly effective collective responses evident in nature. DOI: http://dx.doi.org/10.7554/eLife.10955.001 PMID:26652003

Consumer co-evolution as an important component of the eco-evolutionary feedback.

PubMed

Hiltunen, Teppo; Becks, Lutz

2014-10-22

Rapid evolution in ecologically relevant traits has recently been recognized to significantly alter the interaction between consumers and their resources, a key interaction in all ecological communities. While these eco-evolutionary dynamics have been shown to occur when prey populations are evolving, little is known about the role of predator evolution and co-evolution between predator and prey in this context. Here, we investigate the role of consumer co-evolution for eco-evolutionary feedback in bacteria-ciliate microcosm experiments by manipulating the initial trait variation in the predator populations. With co-evolved predators, prey evolve anti-predatory defences faster, trait values are more variable, and predator and prey population sizes are larger at the end of the experiment compared with the non-co-evolved predators. Most importantly, differences in predator traits results in a shift from evolution driving ecology, to ecology driving evolution. Thus we demonstrate that predator co-evolution has important effects on eco-evolutionary dynamics.

Polarization spectroscopy of the sodium dimer utilizing a triple-resonance technique in the presence of argon

NASA Astrophysics Data System (ADS)

Arndt, Phillip; Horton, Timothy; McFarland, Jacob; Bayram, Burcin; Miami University Spectroscopy Team

2015-05-01

The collisional dynamics of molecular sodium in the 61Σg electronic state is under investigation using a triple resonance technique in the presence of argon. A continuous wave ring dye laser is used to populate specific rovibrational levels of the A1Σu electronic state. A pump-probe technique is then employed where the pump laser populates the 61Σg state, and the probe laser dumps the population to the B1Σu state. From this level, fluorescence is detected as the system decays to the X1Σg state. We measure the polarization of this signal in the presence of various argon pressures. We will present our current work as well as the processes involved in the experiment. Financial support from the National Science Foundation (Grant No. NSF-PHY-1309571) is gratefully acknowledged.

Table-top two-color soft X-ray laser by means of Ni-like plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Masoudnia, Leili; Ruiz-Lopez, Mabel; Bleiner, Davide, E-mail: davide.bleiner@empa.ch

2016-04-15

Laser-produced Ni-like plasmas are known as active media for extreme ultraviolet lasing, with the flexibility to two-color lasing. Two-color laser generation is very complex at accelerator facilities. In this work, plasma lasing at the 3d{sup 9}4d{sup 1}(J = 0) → 3d{sup 9}4p{sup 1}(J = 1) (collisional-pumping process) and the 3d{sup 9}4f{sup 1}(J = 1) → 3d{sup 9}4d{sup 1}(J = 1) (photo-pumping process) transitions is studied experimentally and computationally. Several key characteristics of collisional- and photo-pumping laser, such as divergence, pointing stability, and intensity have been investigated. The measurements showed different pulse characteristics for the two lasing processes affected by plasma inhomogeneity in temperature and density. Analytical expressions of these characteristicsmore » for both collisional- and photo-pumping are derived. It is found that the plasma that maximizes the photo-pumping lasing is 20% hotter and 70% denser than the plasma that optimizes the collisional-pumping lasing. The gain of collisional pumping is ≈4 times higher than the gain for the photo-pumping. The gain lifetime is a factor of ≈5.2 larger for the monopole-pumping. Similarly, the gain thickness is a factor of ≈1.8 larger. It is also found that the gain build-up time for collisional- and photo-pumping is 0.7 ps and 0.9 ps, respectively, whereas the build-up length-scale is 11.5 μm and 6.3 μm, respectively.« less

Petrologic evidence for collisional heating of chondritic asteroids

NASA Technical Reports Server (NTRS)

Rubin, Alan E.

1995-01-01

The identification of the mechanism(s) responsible for heating asteroids is among the major problems in planetary science. Because of difficulties with models of electromagnetic induction and the decay of short-lived radionuclides, it is worthwhile to evaluate the evidence for collisional heating. New evidence for localized impact heating comes from the high proportion of relict type-6 material among impact-melt-bearing ordinary chondrites (OC). This relict material was probably metamorphosed by residual heat within large craters. Olivine aggregates composed of faceted crystals with 120 deg triple junctions occur within the melted regions of the Chico and Rose City OC melt rocks; the olivine aggregates formed from shocked, mosaicized olivine grains that underwent contact metamorphism. Large-scale collisional heating is supoorted by the correlation in OC between petrologic type and shock stage; no other heating mechanism can readily account for this correlation. The occurrence of impact-melt-rock clasts in OC that have been metamorphosed along with their whole rocks indicates that some impact events preceded or accompanied thermal metamorphism. Such impacts events, occurring during or shortly after accretion, are probably responsible for substantially melting approximately 0.5% of OC. These events must have heated a larger percentage of OC to subsolidus temperatures sufficient to have caused significant metamorphism. If collisional heating is viable, then OC parent asteroids must have been large; large OC asteroids in the main belt may include those of the S(IV) spectral subtype. Collisional heating is inconsistent with layered ('onion-shell') structures in OC asteroids (wherein the degree of metamorphism increases with depth), but the evidence for such structures is weak. It seems likely that collisional heating played an important role in metamorphosing chondritic asteroids.

An Examination of Problem-Based Teaching and Learning in Population Genetics and Evolution Using EVOLVE, a Computer Simulation.

ERIC Educational Resources Information Center

Soderberg, Patti; Price, Frank

2003-01-01

Examines a lesson in which students are engaged in inquiry in evolutionary biology to develop better understanding of concepts and reasoning skills necessary to support knowledge claims about changes in the genetic structure of populations known as microevolution. Explains how a software simulation, EVOLVE, can be used to foster discussions about…

Automatic Molecular Design using Evolutionary Techniques

NASA Technical Reports Server (NTRS)

Globus, Al; Lawton, John; Wipke, Todd; Saini, Subhash (Technical Monitor)

1998-01-01

Molecular nanotechnology is the precise, three-dimensional control of materials and devices at the atomic scale. An important part of nanotechnology is the design of molecules for specific purposes. This paper describes early results using genetic software techniques to automatically design molecules under the control of a fitness function. The fitness function must be capable of determining which of two arbitrary molecules is better for a specific task. The software begins by generating a population of random molecules. The population is then evolved towards greater fitness by randomly combining parts of the better individuals to create new molecules. These new molecules then replace some of the worst molecules in the population. The unique aspect of our approach is that we apply genetic crossover to molecules represented by graphs, i.e., sets of atoms and the bonds that connect them. We present evidence suggesting that crossover alone, operating on graphs, can evolve any possible molecule given an appropriate fitness function and a population containing both rings and chains. Prior work evolved strings or trees that were subsequently processed to generate molecular graphs. In principle, genetic graph software should be able to evolve other graph representable systems such as circuits, transportation networks, metabolic pathways, computer networks, etc.

Exact collisional moments for plasma fluid theories

NASA Astrophysics Data System (ADS)

Pfefferlé, D.; Hirvijoki, E.; Lingam, M.

2017-04-01

The velocity-space moments of the often troublesome nonlinear Landau collision operator are expressed exactly in terms of multi-index Hermite-polynomial moments of distribution functions. The collisional moments are shown to be generated by derivatives of two well-known functions, namely, the Rosenbluth-MacDonald-Judd-Trubnikov potentials for a Gaussian distribution. The resulting formula has a nonlinear dependency on the relative mean flow of the colliding species normalised to the root-mean-square of the corresponding thermal velocities and a bilinear dependency on densities and higher-order velocity moments of the distribution functions, with no restriction on temperature, flow, or mass ratio of the species. The result can be applied to both the classic transport theory of plasmas that relies on the Chapman-Enskog method, as well as to derive collisional fluid equations that follow Grad's moment approach. As an illustrative example, we provide the collisional ten-moment equations with exact conservation laws for momentum- and energy-transfer rates.

Exact collisional moments for plasma fluid theories

NASA Astrophysics Data System (ADS)

Pfefferle, David; Hirvijoki, Eero; Lingam, Manasvi

2017-10-01

The velocity-space moments of the often troublesome nonlinear Landau collision operator are expressed exactly in terms of multi-index Hermite-polynomial moments of the distribution functions. The collisional moments are shown to be generated by derivatives of two well-known functions, namely the Rosenbluth-MacDonald-Judd-Trubnikov potentials for a Gaussian distribution. The resulting formula has a nonlinear dependency on the relative mean flow of the colliding species normalised to the root-mean-square of the corresponding thermal velocities, and a bilinear dependency on densities and higher-order velocity moments of the distribution functions, with no restriction on temperature, flow or mass ratio of the species. The result can be applied to both the classic transport theory of plasmas, that relies on the Chapman-Enskog method, as well as to deriving collisional fluid equations that follow Grad's moment approach. As an illustrative example, we provide the collisional ten-moment equations with exact conservation laws for momentum- and energy-transfer rate.

Exact collisional moments for plasma fluid theories

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pfefferlé, D.; Hirvijoki, E.; Lingam, M.

The velocity-space moments of the often troublesome nonlinear Landau collision operator are expressed exactly in terms of multi-index Hermite-polynomial moments of distribution functions. The collisional moments are shown to be generated by derivatives of two well-known functions, namely, the Rosenbluth-MacDonald-Judd-Trubnikov potentials for a Gaussian distribution. The resulting formula has a nonlinear dependency on the relative mean flow of the colliding species normalised to the root-mean-square of the corresponding thermal velocities and a bilinear dependency on densities and higher-order velocity moments of the distribution functions, with no restriction on temperature, flow, or mass ratio of the species. The result can bemore » applied to both the classic transport theory of plasmas that relies on the Chapman-Enskog method, as well as to derive collisional fluid equations that follow Grad's moment approach. As an illustrative example, we provide the collisional ten-moment equations with exact conservation laws for momentum-and energy-transfer rates.« less

Exact collisional moments for plasma fluid theories

DOE PAGES

Pfefferlé, D.; Hirvijoki, E.; Lingam, M.

2017-04-01

The velocity-space moments of the often troublesome nonlinear Landau collision operator are expressed exactly in terms of multi-index Hermite-polynomial moments of distribution functions. The collisional moments are shown to be generated by derivatives of two well-known functions, namely, the Rosenbluth-MacDonald-Judd-Trubnikov potentials for a Gaussian distribution. The resulting formula has a nonlinear dependency on the relative mean flow of the colliding species normalised to the root-mean-square of the corresponding thermal velocities and a bilinear dependency on densities and higher-order velocity moments of the distribution functions, with no restriction on temperature, flow, or mass ratio of the species. The result can bemore » applied to both the classic transport theory of plasmas that relies on the Chapman-Enskog method, as well as to derive collisional fluid equations that follow Grad's moment approach. As an illustrative example, we provide the collisional ten-moment equations with exact conservation laws for momentum-and energy-transfer rates.« less

Anisotropic hydrodynamics with a scalar collisional kernel

NASA Astrophysics Data System (ADS)

Almaalol, Dekrayat; Strickland, Michael

2018-04-01

Prior studies of nonequilibrium dynamics using anisotropic hydrodynamics have used the relativistic Anderson-Witting scattering kernel or some variant thereof. In this paper, we make the first study of the impact of using a more realistic scattering kernel. For this purpose, we consider a conformal system undergoing transversally homogenous and boost-invariant Bjorken expansion and take the collisional kernel to be given by the leading order 2 ↔2 scattering kernel in scalar λ ϕ4 . We consider both classical and quantum statistics to assess the impact of Bose enhancement on the dynamics. We also determine the anisotropic nonequilibrium attractor of a system subject to this collisional kernel. We find that, when the near-equilibrium relaxation-times in the Anderson-Witting and scalar collisional kernels are matched, the scalar kernel results in a higher degree of momentum-space anisotropy during the system's evolution, given the same initial conditions. Additionally, we find that taking into account Bose enhancement further increases the dynamically generated momentum-space anisotropy.

Experimental characterization of a transition from collisionless to collisional interaction between head-on-merging supersonic plasma jets a)

DOE PAGES

Moser, Auna L.; Hsu, Scott C.

2015-05-01

We present results from experiments on the head-on merging of two supersonic plasma jets in an initially collisionless regime for the counter-streaming ions [A. L. Moser & S. C. Hsu, Phys. Plasmas, submitted (2014)]. The plasma jets are of either an argon/impurity or hydrogen/impurity mixture and are produced by pulsed-power-driven railguns. Based on time- and space-resolved fast-imaging, multi-chord interferometry, and survey-spectroscopy measurements of the overlapping region between the merging jets, we observe that the jets initially interpenetrate, consistent with calculated inter-jet ion collision lengths, which are long. As the jets interpenetrate, a rising mean-charge state causes a rapid decrease inmore » the inter-jet ion collision length. Finally, the interaction becomes collisional and the jets stagnate, eventually producing structures consistent with collisional shocks. These experimental observations can aid in the validation of plasma collisionality and ionization models for plasmas with complex equations of state.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sugama, H.; Nunami, M.; Department of Fusion Science, SOKENDAI

Effects of collisions on conservation laws for toroidal plasmas are investigated based on the gyrokinetic field theory. Associating the collisional system with a corresponding collisionless system at a given time such that the two systems have the same distribution functions and electromagnetic fields instantaneously, it is shown how the collisionless conservation laws derived from Noether's theorem are modified by the collision term. Effects of the external source term added into the gyrokinetic equation can be formulated similarly with the collisional effects. Particle, energy, and toroidal momentum balance equations including collisional and turbulent transport fluxes are systematically derived using a novelmore » gyrokinetic collision operator, by which the collisional change rates of energy and canonical toroidal angular momentum per unit volume in the gyrocenter space can be given in the conservative forms. The ensemble-averaged transport equations of particles, energy, and toroidal momentum given in the present work are shown to include classical, neoclassical, and turbulent transport fluxes which agree with those derived from conventional recursive formulations.« less

Experimental characterization of a transition from collisionless to collisional interaction between head-on-merging supersonic plasma jets a)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moser, Auna L.; Hsu, Scott C.

We present results from experiments on the head-on merging of two supersonic plasma jets in an initially collisionless regime for the counter-streaming ions [A. L. Moser & S. C. Hsu, Phys. Plasmas, submitted (2014)]. The plasma jets are of either an argon/impurity or hydrogen/impurity mixture and are produced by pulsed-power-driven railguns. Based on time- and space-resolved fast-imaging, multi-chord interferometry, and survey-spectroscopy measurements of the overlapping region between the merging jets, we observe that the jets initially interpenetrate, consistent with calculated inter-jet ion collision lengths, which are long. As the jets interpenetrate, a rising mean-charge state causes a rapid decrease inmore » the inter-jet ion collision length. Finally, the interaction becomes collisional and the jets stagnate, eventually producing structures consistent with collisional shocks. These experimental observations can aid in the validation of plasma collisionality and ionization models for plasmas with complex equations of state.« less

Two developmentally temporal quantitative trait loci underlie convergent evolution of increased branchial bone length in sticklebacks

PubMed Central

Erickson, Priscilla A.; Glazer, Andrew M.; Cleves, Phillip A.; Smith, Alyson S.; Miller, Craig T.

2014-01-01

In convergent evolution, similar phenotypes evolve repeatedly in independent populations, often reflecting adaptation to similar environments. Understanding whether convergent evolution proceeds via similar or different genetic and developmental mechanisms offers insight towards the repeatability and predictability of evolution. Oceanic populations of threespine stickleback fish, Gasterosteus aculeatus, have repeatedly colonized countless freshwater lakes and streams, where new diets lead to morphological adaptations related to feeding. Here, we show that heritable increases in branchial bone length have convergently evolved in two independently derived freshwater stickleback populations. In both populations, an increased bone growth rate in juveniles underlies the convergent adult phenotype, and one population also has a longer cartilage template. Using F2 crosses from these two freshwater populations, we show that two quantitative trait loci (QTL) control branchial bone length at distinct points in development. In both populations, a QTL on chromosome 21 controls bone length throughout juvenile development, and a QTL on chromosome 4 controls bone length only in adults. In addition to these similar developmental profiles, these QTL show similar chromosomal locations in both populations. Our results suggest that sticklebacks have convergently evolved longer branchial bones using similar genetic and developmental programmes in two independently derived populations. PMID:24966315

An Empirical Planetesimal Belt Radius–Stellar Luminosity Relation

NASA Astrophysics Data System (ADS)

Matrà, L.; Marino, S.; Kennedy, G. M.; Wyatt, M. C.; Öberg, K. I.; Wilner, D. J.

2018-05-01

Resolved observations of millimeter-sized dust, tracing larger planetesimals, have pinpointed the location of 26 Edgeworth–Kuiper Belt analogs. We report that a belt’s distance R to its host star correlates with the star’s luminosity L ⋆, following R\\propto {L}\\star 0.19 with a low intrinsic scatter of ∼17%. Remarkably, our Edgeworth–Kuiper Belt in the solar system and the two CO snow lines imaged in protoplanetary disks lie close to this R–L ⋆ relation, suggestive of an intrinsic relationship between protoplanetary disk structures and belt locations. To test the effect of bias on the relation, we use a Monte Carlo approach and simulate uncorrelated model populations of belts. We find that observational bias could produce the slope and intercept of the R–L ⋆ relation but is unable to reproduce its low scatter. We then repeat the simulation taking into account the collisional evolution of belts, following the steady-state model that fits the belt population as observed through infrared excesses. This significantly improves the fit by lowering the scatter of the simulated R–L ⋆ relation; however, this scatter remains only marginally consistent with the one observed. The inability of observational bias and collisional evolution alone to reproduce the tight relationship between belt radius and stellar luminosity could indicate that planetesimal belts form at preferential locations within protoplanetary disks. The similar trend for CO snow line locations would then indicate that the formation of planetesimals or planets in the outer regions of planetary systems is linked to the volatility of their building blocks, as postulated by planet formation models.

How Closely Related Are Conformations of Protein Ions Sampled by IM-MS to Native Solution Structures?

NASA Astrophysics Data System (ADS)

Chen, Shu-Hua; Russell, David H.

2015-09-01

Here, we critically evaluate the effects of changes in the ion internal energy (Eint) on ion-neutral collision cross sections (CCS) of ions of two structurally diverse proteins, specifically the [M + 6H]6+ ion of ubiquitin (ubq6+), the [M + 5H]5+ ion of the intrinsically disordered protein (IDP) apo-metallothionein-2A (MT), and its partially- and fully-metalated isoform, the [CdiMT]5+ ion. The ion-neutral CCS for ions formed by "native-state" ESI show a strong dependence on Eint. Collisional activation is used to increase Eint prior to the ions entering and within the traveling wave (TW) ion mobility analyzer. Comparisons of experimental CCSs with those generated by molecular dynamics (MD) simulation for solution-phase ions and solvent-free ions as a function of temperature provide new insights about conformational preferences and retention of solution conformations. The Eint-dependent CCSs, which reveal increased conformational diversity of the ion population, are discussed in terms of folding/unfolding of solvent-free ions. For example, ubiquitin ions that have low internal energies retain native-like conformations, whereas ions that are heated by collisional activation possess higher internal energies and yield a broader range of CCS owing to increased conformational diversity due to losses of secondary and tertiary structures. In contrast, the CCS profile for the IDP apoMT is consistent with kinetic trapping of an ion population composed of a wide range of conformers, and as the Eint is increased, these structurally labile conformers unfold to an elongated conformation.

Determination of electron density and temperature in non-LTE plasmas from spectral lines of impurity ions

NASA Technical Reports Server (NTRS)

Kunc, Joseph A.

1988-01-01

A novel approach for calculating the populations of the excited Li-like ions C IV, N V, O VI, and Ne VIII is presented. The populations of the 2(2P), 3(2S), 3(2P), and 3(2D) electronic levels in these ions in optically thin plasmas with a broad range of electron density, N(e), and temperature, T(e), are determined from the collisional-radiative model by solving the system of rate equations for the production of excited ions; the equations are linear with respect to the excited ion populations, and the N(e) and T(e) are taken as independent variables. These populations are used to determine the ratios of line intensities for dipole allowed transitions between various energy levels. This approach can be applied to impurities other than the lithiumlike ions and is especially useful for diagnostics of systems where nonintrusive spectroscopic techniques must be used.

Collisional dissipation in Vlasov turbulence

NASA Astrophysics Data System (ADS)

Pezzi, O.; Perrone, D.; Servidio, S.; Valentini, F.; Sorriso-Valvo, L.; Zouganelis, Y.; Veltri, P.

2017-12-01

A puzzling aspect of solar-wind dynamics consists in the empirical evidence that it is hotter than expected for an adiabatic expanding gas. The cooling of the expanding solar wind is less efficient than it should be, then a key question is how does the solar wind energy turn into heat and keep it hot. Understanding the mechanisms of energy dissipation into heat from the Sun in such a collision-free system represents a key challenge not only in space plasma physics but also from a general thermodynamic perspective. Indeed, any mechanism which does not take into account collisions lacks the final part of the heating process description, related to the irreversible degradation of information. In the solar wind collisions are considered far too weak to produce significant effects on plasma behavior. However, the presence of strong out-of-equilibrium phase space structures, whose signature has been highlighted by in-situ spacecraft measurements and by means of kinetic numerical simulations, could enhance the inter-particle collisions and convert the non-equilibrium features into heat. Here, by focusing on a spatially homogeneous force-free weakly collisional plasma, it is shown that several characteristic times are recovered during the collisional relaxation of fine velocity structures and, hence, fine velocity structures are dissipated by collisions in a time much shorter compared to global non-Maxwellian features, as temperature anisotropies. This indicates that plasma collisionality can locally increase due to the strong velocity space deformation of the particle velocity distribution function (VDF). To quantify the effect of collisions in a turbulent scenario, a hybrid Vlasov-Maxwell simulation has been performed to generate the typical turbulent kinetic plasma regime, characterized by the presence of coherent structures, such as vortices and current sheets, where the ion distribution function is found to be strongly deformed. A direct measure of the collisional dissipation confirms that VDF deformations are significantly related to the enhancement of the plasma collisionality. Finally, the use of the collisional operator in an already developed turbulence allows us to investigate the inter-play of collisions, which tend to restore the thermal equilibrium, and other collisionless physical processes.

Jupiter's decisive role in the inner Solar System's early evolution.

PubMed

Batygin, Konstantin; Laughlin, Greg

2015-04-07

The statistics of extrasolar planetary systems indicate that the default mode of planet formation generates planets with orbital periods shorter than 100 days and masses substantially exceeding that of the Earth. When viewed in this context, the Solar System is unusual. Here, we present simulations which show that a popular formation scenario for Jupiter and Saturn, in which Jupiter migrates inward from a > 5 astronomical units (AU) to a ≈ 1.5 AU before reversing direction, can explain the low overall mass of the Solar System's terrestrial planets, as well as the absence of planets with a < 0.4 AU. Jupiter's inward migration entrained s ≳ 10-100 km planetesimals into low-order mean motion resonances, shepherding and exciting their orbits. The resulting collisional cascade generated a planetesimal disk that, evolving under gas drag, would have driven any preexisting short-period planets into the Sun. In this scenario, the Solar System's terrestrial planets formed from gas-starved mass-depleted debris that remained after the primary period of dynamical evolution.

Integrated modeling of temperature and rotation profiles in JET ITER-like wall discharges

NASA Astrophysics Data System (ADS)

Rafiq, T.; Kritz, A. H.; Kim, Hyun-Tae; Schuster, E.; Weiland, J.

2017-10-01

Simulations of 78 JET ITER-like wall D-D discharges and 2 D-T reference discharges are carried out using the TRANSP predictive integrated modeling code. The time evolved temperature and rotation profiles are computed utilizing the Multi-Mode anomalous transport model. The discharges involve a broad range of conditions including scans over gyroradius, collisionality, and values of q95. The D-T reference discharges are selected in anticipation of the D-T experimental campaign planned at JET in 2019. The simulated temperature and rotation profiles are compared with the corresponding experimental profiles in the radial range from the magnetic axis to the ρ = 0.9 flux surface. The comparison is quantified by calculating the RMS deviations and Offsets. Overall, good agreement is found between the profiles produced in the simulations and the experimental data. It is planned that the simulations obtained using the Multi-Mode model will be compared with the simulations using the TGLF model. Research supported in part by the US, DoE, Office of Sciences.

Parallel trait adaptation across opposing thermal environments in experimental Drosophila melanogaster populations

PubMed Central

Tobler, Ray; Hermisson, Joachim; Schlötterer, Christian

2015-01-01

Thermal stress is a pervasive selective agent in natural populations that impacts organismal growth, survival, and reproduction. Drosophila melanogaster exhibits a variety of putatively adaptive phenotypic responses to thermal stress in natural and experimental settings; however, accompanying assessments of fitness are typically lacking. Here, we quantify changes in fitness and known thermal tolerance traits in replicated experimental D. melanogaster populations following more than 40 generations of evolution to either cyclic cold or hot temperatures. By evaluating fitness for both evolved populations alongside a reconstituted starting population, we show that the evolved populations were the best adapted within their respective thermal environments. More strikingly, the evolved populations exhibited increased fitness in both environments and improved resistance to both acute heat and cold stress. This unexpected parallel response appeared to be an adaptation to the rapid temperature changes that drove the cycling thermal regimes, as parallel fitness changes were not observed when tested in a constant thermal environment. Our results add to a small, but growing group of studies that demonstrate the importance of fluctuating temperature changes for thermal adaptation and highlight the need for additional work in this area. PMID:26080903

Center of Excellence in Theoretical Geoplasma Research

DTIC Science & Technology

1993-08-31

of the Balescu -Lenard-Poisson ecluations for collisional plasmas were reported by J.R. Jasperse of the Geophysics Directorate. Discussions at the...the Chairperson: W. Burke (AFGL) 15:00 - 16:30 1. "Solutions of the linearized Balescu -Lenard-Poisson Equations for a Weakly-Collisional Plasma: Some

Center of Excellence in Theoretical Geoplasma Research

DTIC Science & Technology

1989-11-10

iii) First results of closed-form solutions of the3 Balescu -Lenard-Poisson equations for collisional plasmas were reported I REPORT November 10, 1989...Basu, "Solutions of the Linearized Balescu -Lenard-Poisson Equations for a Weakly-Collisional Plasma: Some New Results". [511 American Geophysical Union

Anomalous transport in the H-mode pedestal of Alcator C-Mod discharges

NASA Astrophysics Data System (ADS)

Pankin, A. Y.; Hughes, J. W.; Greenwald, M. J.; Kritz, A. H.; Rafiq, T.

2017-02-01

Anomalous transport in the H-mode pedestal region of five Alcator C-Mod discharges, representing a collisionality scan is analyzed. The understanding of anomalous transport in the pedestal region is important for the development of a comprehensive model for the H-mode pedestal slope. In this research, a possible role of the drift resistive inertial ballooning modes (Rafiq et al 2010 Phys. Plasmas 17 082511) in the edge of Alcator C-Mod discharges is analyzed. The stability analysis, carried out using the TRANSP code, indicates that the DRIBM modes are strongly unstable in Alcator C-Mod discharges with large electron collisionality. An improved interpretive analysis of H-mode pedestal experimental data is carried out utilizing the additive flux minimization technique (Pankin et al 2013 Phys. Plasmas 20 102501) together with the guiding-center neoclassical kinetic XGC0 code. The neoclassical and neutral physics are simulated in the XGC0 code and the anomalous fluxes are computed using the additive flux minimization technique. The anomalous fluxes are reconstructed and compared with each other for the collisionality scan Alcator C-Mod discharges. It is found that the electron thermal anomalous diffusivities at the pedestal top increase with the electron collisionality. This dependence can also point to the drift resistive inertial ballooning modes as the modes that drive the anomalous transport in the plasma edge of highly collisional discharges.

Evolution of increased adult longevity in Drosophila melanogaster populations selected for adaptation to larval crowding.

PubMed

Shenoi, V N; Ali, S Z; Prasad, N G

2016-02-01

In holometabolous animals such as Drosophila melanogaster, larval crowding can affect a wide range of larval and adult traits. Adults emerging from high larval density cultures have smaller body size and increased mean life span compared to flies emerging from low larval density cultures. Therefore, adaptation to larval crowding could potentially affect adult longevity as a correlated response. We addressed this issue by studying a set of large, outbred populations of D. melanogaster, experimentally evolved for adaptation to larval crowding for 83 generations. We assayed longevity of adult flies from both selected (MCUs) and control populations (MBs) after growing them at different larval densities. We found that MCUs have evolved increased mean longevity compared to MBs at all larval densities. The interaction between selection regime and larval density was not significant, indicating that the density dependence of mean longevity had not evolved in the MCU populations. The increase in longevity in MCUs can be partially attributed to their lower rates of ageing. It is also noteworthy that reaction norm of dry body weight, a trait probably under direct selection in our populations, has indeed evolved in MCU populations. To the best of our knowledge, this is the first report of the evolution of adult longevity as a correlated response of adaptation to larval crowding. © 2015 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2015 European Society For Evolutionary Biology.

Genetic architecture and the evolution of sex.

PubMed

Lohaus, Rolf; Burch, Christina L; Azevedo, Ricardo B R

2010-01-01

Theoretical investigations of the advantages of sex have tended to treat the genetic architecture of organisms as static and have not considered that genetic architecture might coevolve with reproductive mode. As a result, some potential advantages of sex may have been missed. Using a gene network model, we recently showed that recombination imposes selection for robustness to mutation and that negative epistasis can evolve as a by-product of this selection. These results motivated a detailed exploration of the mutational deterministic hypothesis, a hypothesis in which the advantage of sex depends critically on epistasis. We found that sexual populations do evolve higher mean fitness and lower genetic load than asexual populations at equilibrium, and, under moderate stabilizing selection and large population size, these equilibrium sexual populations resist invasion by asexuals. However, we found no evidence that these long- and short-term advantages to sex were explained by the negative epistasis that evolved in our experiments. The long-term advantage of sex was that sexual populations evolved a lower deleterious mutation rate, but this property was not sufficient to account for the ability of sexual populations to resist invasion by asexuals. The ability to resist asexual invasion was acquired simultaneously with an increase in recombinational robustness that minimized the cost of sex. These observations provide the first direct evidence that sexual reproduction does indeed select for conditions that favor its own maintenance. Furthermore, our results highlight the importance of considering a dynamic view of the genetic architecture to understand the evolution of sex and recombination.

Population kinetics on K alpha lines of partially ionized Cl atoms.

PubMed

Kawamura, Tohru; Nishimura, Hiroaki; Koike, Fumihiro; Ochi, Yoshihiro; Matsui, Ryoji; Miao, Wen Yong; Okihara, Shinichiro; Sakabe, Shuji; Uschmann, Ingo; Förster, Eckhart; Mima, Kunioki

2002-07-01

A population kinetics code was developed to analyze K alpha emission from partially ionized chlorine atoms in hydrocarbon plasmas. Atomic processes are solved under collisional-radiative equilibrium for two-temperature plasmas. It is shown that the fast electrons dominantly contribute to ionize the K-shell bound electrons (i.e., inner-shell ionization) and the cold electrons to the outer-shell bound ones. Ratios of K alpha lines of partially ionized atoms are presented as a function of cold-electron temperature. The model was validated by observation of the K alpha lines from a chlorinated plastic target irradiated with 1 TW Ti:sapphire laser pulses at 1.5 x 10(17) W/cm(2), inferring a plasma temperature of about 100 eV on the target surface.

The environmental zero-point problem in evolutionary reaction norm modeling.

PubMed

Ergon, Rolf

2018-04-01

There is a potential problem in present quantitative genetics evolutionary modeling based on reaction norms. Such models are state-space models, where the multivariate breeder's equation in some form is used as the state equation that propagates the population state forward in time. These models use the implicit assumption of a constant reference environment, in many cases set to zero. This zero-point is often the environment a population is adapted to, that is, where the expected geometric mean fitness is maximized. Such environmental reference values follow from the state of the population system, and they are thus population properties. The environment the population is adapted to, is, in other words, an internal population property, independent of the external environment. It is only when the external environment coincides with the internal reference environment, or vice versa, that the population is adapted to the current environment. This is formally a result of state-space modeling theory, which is an important theoretical basis for evolutionary modeling. The potential zero-point problem is present in all types of reaction norm models, parametrized as well as function-valued, and the problem does not disappear when the reference environment is set to zero. As the environmental reference values are population characteristics, they ought to be modeled as such. Whether such characteristics are evolvable is an open question, but considering the complexity of evolutionary processes, such evolvability cannot be excluded without good arguments. As a straightforward solution, I propose to model the reference values as evolvable mean traits in their own right, in addition to other reaction norm traits. However, solutions based on an evolvable G matrix are also possible.

Different Evolutionary Paths to Complexity for Small and Large Populations of Digital Organisms

PubMed Central

2016-01-01

A major aim of evolutionary biology is to explain the respective roles of adaptive versus non-adaptive changes in the evolution of complexity. While selection is certainly responsible for the spread and maintenance of complex phenotypes, this does not automatically imply that strong selection enhances the chance for the emergence of novel traits, that is, the origination of complexity. Population size is one parameter that alters the relative importance of adaptive and non-adaptive processes: as population size decreases, selection weakens and genetic drift grows in importance. Because of this relationship, many theories invoke a role for population size in the evolution of complexity. Such theories are difficult to test empirically because of the time required for the evolution of complexity in biological populations. Here, we used digital experimental evolution to test whether large or small asexual populations tend to evolve greater complexity. We find that both small and large—but not intermediate-sized—populations are favored to evolve larger genomes, which provides the opportunity for subsequent increases in phenotypic complexity. However, small and large populations followed different evolutionary paths towards these novel traits. Small populations evolved larger genomes by fixing slightly deleterious insertions, while large populations fixed rare beneficial insertions that increased genome size. These results demonstrate that genetic drift can lead to the evolution of complexity in small populations and that purifying selection is not powerful enough to prevent the evolution of complexity in large populations. PMID:27923053

More rapid climate change promotes evolutionary rescue through selection for increased dispersal distance.

PubMed

Boeye, Jeroen; Travis, Justin M J; Stoks, Robby; Bonte, Dries

2013-02-01

Species can either adapt to new conditions induced by climate change or shift their range in an attempt to track optimal environmental conditions. During current range shifts, species are simultaneously confronted with a second major anthropogenic disturbance, landscape fragmentation. Using individual-based models with a shifting climate window, we examine the effect of different rates of climate change on the evolution of dispersal distances through changes in the genetically determined dispersal kernel. Our results demonstrate that the rate of climate change is positively correlated to the evolved dispersal distances although too fast climate change causes the population to crash. When faced with realistic rates of climate change, greater dispersal distances evolve than those required for the population to keep track of the climate, thereby maximizing population size. Importantly, the greater dispersal distances that evolve when climate change is more rapid, induce evolutionary rescue by facilitating the population in crossing large gaps in the landscape. This could ensure population persistence in case of range shifting in fragmented landscapes. Furthermore, we highlight problems in using invasion speed as a proxy for potential range shifting abilities under climate change.

Spectral flux from low-density photospheres - Numerical results

NASA Technical Reports Server (NTRS)

Hershkowitz, S.; Linder, E.; Wagoner, R. V.

1986-01-01

Radiative transfer through sharp, quasi-static atmospheres whose opacity is dominated by hydrogen is considered at densities low enough that scattering usually dominates absorption and radiative excitations usually dominate collisional excitations. Numerical results for the continuum spectral flux are obtained for effective temperatures T(e) = 6000-16,000 K and scale heights Delta-R = 10 to the 10th - 10 to the 14th cm. Spectra are significantly different than if LTE level populations were assumed. Comparison with observations of the Type II supernova 1980k tends to increase the value of the Hubble constant previously obtained by the Baade (1926) method.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Morrill, J.S.; Benesch, W.M.

Previous model results have shown that the N{sub 2} triplet vibrational level populations in the aurora are strongly affected by cascade and quenching by atomic and molecular oxygen. As the aurora penetrates to lower altitudes (less than 100 km) the role of quenching by atomic oxygen becomes less important and processes involving N{sub 2} collisions begin to play a more prominent part. The authors are developing a model which will yield steady state vibrational level populations for both the singlet and triplet valence states of N{sub 2}. The model currently provides results for the seven low-lying N{sub 2} triplet statesmore » (A {sup 3}{Sigma}{sub u}{sup +}, B {sup 3}{Pi}{sub g}, W {sup 3}{Delta}{sub u}, B{prime}{sup 3}{Sigma}{sub u}, C{sup 3}{Pi}{sub u}, D{sup 3}{Sigma}{sub u}{sup +}, and E{sup 3}{Sigma}{sub g}{sup +}). These states are responsible for auroral emissions from the UV (Vegard-Kaplan (VK), second positive (2PG)) through the visible to the infrared (first positive (1PG), infrared afterglow (IRA), Wu-Benesch (WB)). The authors have included two additional collisional processes in the current model which were not treated previously. These are the intersystem collisional transfer of excitation (ICT) between the B state and the A, W, and B{prime} states and vibrational redistribution within the A state vibrational manifold, both due to collisions with ground state N{sub 2}. The present work compares the current model results with those of a previous model as well as ground, airborne, and rocket observations. The comparison between N{sub 2}(A) (VK) and N{sub 2}(B) (1PG) vibrational level populations predicted by this model and a number of auroral observations indicate that the current model achieves a significant improvement in the fit between calculation and observation. 81 refs., 12 figs., 2 tabs.« less

A Case Study of the De Novo Evolution of a Complex Odometric Behavior in Digital Organisms

PubMed Central

Grabowski, Laura M.; Bryson, David M.; Dyer, Fred C.; Pennock, Robert T.; Ofria, Charles

2013-01-01

Investigating the evolution of animal behavior is difficult. The fossil record leaves few clues that would allow us to recapitulate the path that evolution took to build a complex behavior, and the large population sizes and long time scales required prevent us from re-evolving such behaviors in a laboratory setting. We present results of a study in which digital organisms–self-replicating computer programs that are subject to mutations and selection–evolved in different environments that required information about past experience for fitness-enhancing behavioral decisions. One population evolved a mechanism for step-counting, a surprisingly complex odometric behavior that was only indirectly related to enhancing fitness. We examine in detail the operation of the evolved mechanism and the evolutionary transitions that produced this striking example of a complex behavior. PMID:23577113

Terahertz generation by beating two Langmuir waves in a warm and collisional plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Xiao-Bo; Qiao, Xin; Cheng, Li-Hong

2015-09-15

Terahertz (THz) radiation generated by beating of two Langmuir waves in a warm and collisional plasma is discussed theoretically. The critical angle between the two Langmuir waves and the critical wave-length (wave vector) of Langmuir waves for generating THz radiation are obtained analytically. Furthermore, the maximum radiation energy is obtained. We find that the critical angle, the critical wave-length, and the generated radiation energy strongly depend on plasma temperature and wave-length of the Langmuir waves. That is, the THz radiation generated by beating of two Langmuir waves in a warm and collisional plasma can be controlled by adjusting the plasmamore » temperature and the Langmuir wave-length.« less

Experimental observation of strong coupling effects on the dispersion of dust acoustic waves in a plasma

NASA Astrophysics Data System (ADS)

Bandyopadhyay, P.; Prasad, G.; Sen, A.; Kaw, P. K.

2007-09-01

The dispersion properties of low frequency dust acoustic waves in the strong coupling regime are investigated experimentally in an argon plasma embedded with a mixture of kaolin and MnO2 dust particles. The neutral pressure is varied over a wide range to change the collisional properties of the dusty plasma. In the low collisional regime the turnover of the dispersion curve at higher wave numbers and the resultant region of ∂ω/∂k<0 are identified as signatures of dust dust correlations. In the high collisional regime dust neutral collisions produce a similar effect and prevent an unambiguous identification of strong coupling effects.

Evolved pesticide tolerance in amphibians: Predicting mechanisms based on pesticide novelty and mode of action.

PubMed

Hua, Jessica; Jones, Devin K; Mattes, Brian M; Cothran, Rickey D; Relyea, Rick A; Hoverman, Jason T

2015-11-01

We examined 10 wood frog populations distributed along an agricultural gradient for their tolerance to six pesticides (carbaryl, malathion, cypermethrin, permethrin, imidacloprid, and thiamethoxam) that differed in date of first registration (pesticide novelty) and mode-of-action (MOA). Our goals were to assess whether: 1) tolerance was correlated with distance to agriculture for each pesticide, 2) pesticide novelty predicted the likelihood of evolved tolerance, and 3) populations display cross-tolerance between pesticides that share and differ in MOA. Wood frog populations located close to agriculture were more tolerant to carbaryl and malathion than populations far from agriculture. Moreover, the strength of the relationship between distance to agriculture and tolerance was stronger for older pesticides compared to newer pesticides. Finally, we found evidence for cross-tolerance between carbaryl and malathion (two pesticides that share MOA). This study provides one of the most comprehensive approaches for understanding patterns of evolved tolerance in non-pest species. Copyright © 2015 Elsevier Ltd. All rights reserved.

Collisional and dynamic evolution of dust from the asteroid belt

NASA Technical Reports Server (NTRS)

Gustafson, Bo A. S.; Gruen, Eberhard; Dermott, Stanley F.; Durda, Daniel D.

1992-01-01

The size and spatial distribution of collisional debris from main belt asteroids is modeled over a 10 million year period. The model dust and meteoroid particles spiral toward the Sun under the action of Poynting-Robertson drag and grind down as they collide with a static background of field particles.

Collisional-radiative modeling of tungsten at temperatures of 1200–2400 eV

DOE PAGES

Colgan, James; Fontes, Christopher; Zhang, Honglin; ...

2015-04-30

We discuss new collisional-radiative modeling calculations of tungsten at moderate temperatures of 1200 to 2400 eV. Such plasma conditions are relevant to ongoing experimental work at ASDEX Upgrade and are expected to be relevant for ITER. Our calculations are made using the Los Alamos National Laboratory (LANL) collisional-radiative modeling ATOMIC code. These calculations formed part of a submission to the recent NLTE-8 workshop that was held in November 2013. This series of workshops provides a forum for detailed comparison of plasma and spectral quantities from NLTE collisional-radiative modeling codes. We focus on the LANL ATOMIC calculations for tungsten that weremore » submitted to the NLTE-8 workshop and discuss different models that were constructed to predict the tungsten emission. In particular, we discuss comparisons between semi-relativistic configuration-average and fully relativistic configuration-average calculations. As a result, we also present semi-relativistic calculations that include fine-structure detail, and discuss the difficult problem of ensuring completeness with respect to the number of configurations included in a CR calculation.« less

Gyrokinetics with Advanced Collision Operators

NASA Astrophysics Data System (ADS)

Belli, E. A.; Candy, J.

2014-10-01

For gyrokinetic studies in the pedestal region, collisions are expected to play a more critical role than in the core and there is concern that more advanced collision operators, as well as numerical methods optimized for the strong collisionality regime, are needed. For this purpose, a new gyrokinetic solver CGYRO has been developed for precise studies of high collisionality regimes. Building on GYRO and NEO, CGYRO uses the NEO pitch angle and energy velocity-space coordinate system to optimize the accuracy of the collision dynamics, particularly for multi-species collisions and including energy diffusion. With implementation of the reduced Hirshman-Sigmar collision operator with full cross-species coupling, CGYRO recovers linear ITG growth rates and the collisional GAM test at moderate collision frequency. Methods to improve the behavior in the collisionless regime, particularly for the trapped/passing particle boundary physics for kinetic electrons, are studied. Extensions to advanced model operators with finite-k⊥ corrections, e.g., the Sugama operator, and the impact of high collisionality on linear gyrokinetic stability in the edge are explored. Work supported by the US DOE under DE-FG02-95ER54309.

Measurements of [C I] Emission from Comet Hale-Bopp

NASA Astrophysics Data System (ADS)

Oliversen, R. J.; Doane, N.; Scherb, F.; Harris, W. M.; Morgenthaler, J. P.

2002-12-01

We present quantitative measurements of cometary [C I] 9850 Å emission obtained during observations of comet Hale-Bopp (C/1995 O1) in 1997 March and April. The observations were carried out using a high-resolution (λ/Δλ~40,000) Fabry-Pérot/CCD spectrometer at the McMath-Pierce Solar telescope on Kitt Peak. This forbidden line, the carbon analog of [O I] 6300 Å, is emitted in the radiative decay of C(1D) atoms. In the absence of other sources and sinks, [C I] 9850 Å emission can be used as a direct tracer of CO photodissociation in comets. However, in Hale-Bopp's large, dense coma, other processes, such as collisional excitation of ground-state C(3P), dissociative recombination of CO+, and collisional dissociation of CO and CO2 may produce significant amounts of C(1D). The long C(1D) radiative lifetime (~4000 s) makes collisional deexcitation (quenching) the primary loss mechanism in the inner coma. Thus, a detailed, self-consistent global model of collisional and photochemical interactions is necessary to fully account for [C I] 9850 Å emission in comet Hale-Bopp.

Revisiting Robustness and Evolvability: Evolution in Weighted Genotype Spaces

PubMed Central

Partha, Raghavendran; Raman, Karthik

2014-01-01

Robustness and evolvability are highly intertwined properties of biological systems. The relationship between these properties determines how biological systems are able to withstand mutations and show variation in response to them. Computational studies have explored the relationship between these two properties using neutral networks of RNA sequences (genotype) and their secondary structures (phenotype) as a model system. However, these studies have assumed every mutation to a sequence to be equally likely; the differences in the likelihood of the occurrence of various mutations, and the consequence of probabilistic nature of the mutations in such a system have previously been ignored. Associating probabilities to mutations essentially results in the weighting of genotype space. We here perform a comparative analysis of weighted and unweighted neutral networks of RNA sequences, and subsequently explore the relationship between robustness and evolvability. We show that assuming an equal likelihood for all mutations (as in an unweighted network), underestimates robustness and overestimates evolvability of a system. In spite of discarding this assumption, we observe that a negative correlation between sequence (genotype) robustness and sequence evolvability persists, and also that structure (phenotype) robustness promotes structure evolvability, as observed in earlier studies using unweighted networks. We also study the effects of base composition bias on robustness and evolvability. Particularly, we explore the association between robustness and evolvability in a sequence space that is AU-rich – sequences with an AU content of 80% or higher, compared to a normal (unbiased) sequence space. We find that evolvability of both sequences and structures in an AU-rich space is lesser compared to the normal space, and robustness higher. We also observe that AU-rich populations evolving on neutral networks of phenotypes, can access less phenotypic variation compared to normal populations evolving on neutral networks. PMID:25390641

Parallel trait adaptation across opposing thermal environments in experimental Drosophila melanogaster populations.

PubMed

Tobler, Ray; Hermisson, Joachim; Schlötterer, Christian

2015-07-01

Thermal stress is a pervasive selective agent in natural populations that impacts organismal growth, survival, and reproduction. Drosophila melanogaster exhibits a variety of putatively adaptive phenotypic responses to thermal stress in natural and experimental settings; however, accompanying assessments of fitness are typically lacking. Here, we quantify changes in fitness and known thermal tolerance traits in replicated experimental D. melanogaster populations following more than 40 generations of evolution to either cyclic cold or hot temperatures. By evaluating fitness for both evolved populations alongside a reconstituted starting population, we show that the evolved populations were the best adapted within their respective thermal environments. More strikingly, the evolved populations exhibited increased fitness in both environments and improved resistance to both acute heat and cold stress. This unexpected parallel response appeared to be an adaptation to the rapid temperature changes that drove the cycling thermal regimes, as parallel fitness changes were not observed when tested in a constant thermal environment. Our results add to a small, but growing group of studies that demonstrate the importance of fluctuating temperature changes for thermal adaptation and highlight the need for additional work in this area. © 2015 The Author(s). Evolution published by Wiley Periodicals, Inc. on behalf of The Society for the Study of Evolution.

Foreland-forearc collisional granitoid and mafic magmatism caused by lower-plate lithospheric slab breakoff: The Acadian of Maine, and other orogens

USGS Publications Warehouse

Schoonmaker, A.; Kidd, W.S.F.; Bradley, D.C.

2005-01-01

During collisional convergence, failure in extension of the lithosphere of the lower plate due to slab pull will reduce the thickness or completely remove lower-plate lithosphere and cause decompression melting of the asthenospheric mantle; magmas from this source may subsequently provide enough heat for substantial partial melting of crustal rocks under or beyond the toe of the collisional accretionary system. In central Maine, United States, this type of magmatism is first apparent in the Early Devonian West Branch Volcanics and equivalent mafic volcanics, in the slightly younger voluminous mafic/silicic magmatic event of the Moxie Gabbro-Katahdin batholith and related ignimbrite volcanism, and in other Early Devonian granitic plutons. Similar lower-plate collisional sequences with mafic and related silicic magmatism probably caused by slab breakoff are seen in the Miocene-Holocene Papuan orogen, and the Hercynian-Alleghenian belt. Magmatism of this type is significant because it gives evidence in those examples of whole-lithosphere extension. We infer that normal fault systems in outer trench slopes of collisional orogens in general, and possibly those of oceanic subduction zones, may not be primarily due to flexural bending, but are also driven by whole-lithosphere extension due to slab pull. The Maine Acadian example suggests that slab failure and this type of magmatism may be promoted by pre-existing large margin-parallel faults in the lower plate. ?? 2005 Geological Society of America.

LIDT-DD: A new hybrid model to understand debris discs observations - The case of massive collisions.

NASA Astrophysics Data System (ADS)

Kral, Q.; Thébault, P.; Augereau, J.-C.; Boccaletti, A.; Charnoz, S.

2014-12-01

LIDT-DD is a new hybrid model coupling the collisional and dynamical evolution in debris discs in a self-consistent way. It has been developed in a way that allows to treat a large number of different astrophysical cases where collisions and dynamics have an important role. This interplay was often totally neglected in previous studies whereas, even for the simplest configurations, the real physics of debris discs imposes strong constraints and interactions between dynamics and collisions. After presenting the LIDT-DD model, we will describe the evolution of violent stochastic collisional events with this model. These massive impacts have been invoked as a possible explanation for some debris discs displaying pronounced azimuthal asymmetries or having a luminosity excess exceeding that expected for systems at collisional steady-state. So far, no thorough modelling of the consequences of such stochastic events has been carried out, mainly because of the extreme numerical challenge of coupling the dynamical and collisional evolution of the released dust. We follow the collisional and dynamical evolution of dust released after the breakup of a Ceres-sized body at 6 AU from its central star. We investigate the duration, magnitude and spatial structure of the signature left by such a violent event, as well as its observational detectability. We use the GRaTer package to estimate the system's luminosity at different wavelengths and derive synthetic images for the SPHERE/VLT and MIRI/JWST instruments.

From pebbles to dust: experiments to observe low-velocity collisional outcomes

NASA Astrophysics Data System (ADS)

Dove, A.; Jorges, J.; Colwell, J. E.

2015-12-01

Particle size evolution in planetary ring systems can be driven by collisions at relatively low velocities (<1 m/s) occurring between objects with a range of sizes from very fine dust to decimeter-sized objects. In these complex systems, collisions between centimeter-sized objects may result in particle growth by accretion, rebounding, or erosive processes that result in the production of additional smaller particles. The outcomes of these collisions are dependent on factors such as collisional energy, particle size, and particle morphology. Numerical simulations are limited by a need to understand these collisional parameters over a range of conditions. We present the results of a sequence of laboratory experiments designed to explore collisions over a range of these parameters. We are able to observe low-velocity collisions by conducting experiments in vacuum chambers in our 0.8-sec drop tower apparatus. Initial experiments utilize a variety of impacting spheres, including glass, Teflon, aluminum, stainless steel, and brass. These spheres are either used in their natural state or are "mantled" - coated with a few-mm thick layer of a cohesive powder. A high-speed, high-resolution video camera is used to record the motion of the colliding bodies. These videos are then processed and we track the particles to determine impactor speeds before and after collision and the collisional outcome; in the case of the mantled impactors, we can assess how much of the powder was released in the collision. We also determine how the coefficient of restitution varies as a function of material type, morphology, and impact velocity. Impact velocities range from about 20-60 cm/s, and we observe that mantling of particles significantly reduces their coefficients of restitution. These results will contribute to an empirical model of collisional outcomes that can help refine our understanding of dusty ring system collisional evolution.

Analytic model of a magnetically insulated transmission line with collisional flow electrons

NASA Astrophysics Data System (ADS)

Stygar, W. A.; Wagoner, T. C.; Ives, H. C.; Corcoran, P. A.; Cuneo, M. E.; Douglas, J. W.; Gilliland, T. L.; Mazarakis, M. G.; Ramirez, J. J.; Seamen, J. F.; Seidel, D. B.; Spielman, R. B.

2006-09-01

We have developed a relativistic-fluid model of the flow-electron plasma in a steady-state one-dimensional magnetically insulated transmission line (MITL). The model assumes that the electrons are collisional and, as a result, drift toward the anode. The model predicts that in the limit of fully developed collisional flow, the relation between the voltage Va, anode current Ia, cathode current Ik, and geometric impedance Z0 of a 1D planar MITL can be expressed as Va=IaZ0h(χ), where h(χ)≡[(χ+1)/4(χ-1)]1/2-ln⁡⌊χ+(χ2-1)1/2⌋/2χ(χ-1) and χ≡Ia/Ik. The relation is valid when Va≳1MV. In the minimally insulated limit, the anode current Ia,min⁡=1.78Va/Z0, the electron-flow current If,min⁡=1.25Va/Z0, and the flow impedance Zf,min⁡=0.588Z0. {The electron-flow current If≡Ia-Ik. Following Mendel and Rosenthal [Phys. Plasmas 2, 1332 (1995)PHPAEN1070-664X10.1063/1.871345], we define the flow impedance Zf as Va/(Ia2-Ik2)1/2.} In the well-insulated limit (i.e., when Ia≫Ia,min⁡), the electron-flow current If=9Va2/8IaZ02 and the flow impedance Zf=2Z0/3. Similar results are obtained for a 1D collisional MITL with coaxial cylindrical electrodes, when the inner conductor is at a negative potential with respect to the outer, and Z0≲40Ω. We compare the predictions of the collisional model to those of several MITL models that assume the flow electrons are collisionless. We find that at given values of Va and Z0, collisions can significantly increase both Ia,min⁡ and If,min⁡ above the values predicted by the collisionless models, and decrease Zf,min⁡. When Ia≫Ia,min⁡, we find that, at given values of Va, Z0, and Ia, collisions can significantly increase If and decrease Zf. Since the steady-state collisional model is valid only when the drift of electrons toward the anode has had sufficient time to establish fully developed collisional flow, and collisionless models assume there is no net electron drift toward the anode, we expect these two types of models to provide theoretical bounds on Ia, If, and Zf.

Early Permian intrusions of the Alai range: Understanding tectonic settings of Hercynian post-collisional magmatism in the South Tien Shan, Kyrgyzstan

NASA Astrophysics Data System (ADS)

Konopelko, D.; Wilde, S. A.; Seltmann, R.; Romer, R. L.; Biske, Yu. S.

2018-03-01

We present geochemical and Sr-Nd-Pb-Hf isotope data as well as the results of single grain U-Pb zircon dating for ten granitoid and alkaline intrusions of the Alai segment of Kyrgyz South Tien Shan (STS). The intrusions comprise four geochemically contrasting series or suites, including (1) I-type and (2) shoshonitic granitoids, (3) peraluminous granitoids including S-type leucogranites and (4) alkaline rocks and carbonatites, closely associated in space. New geochronological data indicate that these diverse magmatic series of the Alai segment formed in a post-collisional setting. Five single grain U-Pb zircon ages in the range 287-281 Ma, in combination with published ages, define the main post-collisional magmatic pulse at 290-280 Ma, which is similar to ages of post-collisional intrusions elsewhere in the STS. An age of 287 ± 4 Ma, obtained for peraluminous graniodiorite of the Liayliak massif, emplaced in amphibolite-facies metamorphic rocks of the Zeravshan-Alai block, is indistinguishable from ca. 290 Ma age of peraluminous granitoids emplaced coevally with Barrovian-type metamorphism in the Garm block, located ca. 40 km south-west of the research area. The Sr-Nd-Pb-Hf isotopic compositions of the studied intrusions are consistent with the reworking of crustal material with 1.6-1.1 Ga average crustal residence times, indicating the formation of the Alai segment on a continental basement with Mesoproterozoic or older crust. The pattern of post-collisional magmatism in the Alai segment, characterized by emplacement of I-type and shoshoninitic granitoids in combination with coeval Barrovian-type metamorphism, is markedly different from the pattern of post-collisional magmatism in the adjacent Kokshaal segment of the STS with predominant A-type granitoids that formed on a former passive margin of the Tarim Craton. We suggest that during the middle-late Carboniferous the Alai segment probably comprised a microcontinent with Precambrian basement located between the Turkestan Ocean to the north and an inferred oceanic basin to the south, where the evidence of supra-subduction magmatism was largely destroyed by subsequent tectonic processes. In this scenario, after collision, the position of the Alai microcontinent between two major sutures enabled delamination of its lithospheric mantle, which resulted in production of diverse post-collisional magmatic series by interaction of ascending asthenospheric material with lithospheric mantle and various crustal protoliths.

Rotationally inelastic collisions of He and Ar with NaK: Experiment and theory

NASA Astrophysics Data System (ADS)

Malenda, R. F.; Jones, J.; Faust, C.; Richter, K.; Wolfe, C. M.; Hickman, A. P.; Huennekens, J.; Talbi, D.; Gatti, F.

2012-06-01

We are investigating collisions of the ground (X^1&+circ;) and first excited (A^1&+circ;) electronic states of NaK using both experimental and theoretical methods. Potential surfaces for HeNaK (fixed NaK bond length) are used for coupled channel calculations of cross sections for rotational energy transfer and also for collisional transfer of orientation and alignment. Additional calculations use the MCTDH wavepacket method. The measurements of the A state collisions involve a pump--probe excitation scheme using polarization labeling and laser-induced fluorescence spectroscopy. The pump excites a particular ro-vibrational level (v,J) of the A state from the X state, and the probe laser is scanned over various transitions to the 3^1π state. In addition to strong direct transitions, weak satellite lines are observed that arise from collisionally-induced transitions from the (v,J) level to (v,J'=J+δJ). This method provides information about the cross sections for transfer of population and orientation for A state levels, and it can be adapted to transitions starting in the X state. For the A state we observe a strong δJ=even propensity for both He and Ar perturbers. Preliminary results for the X state do not show this propensity.

Cooling and Laser-Induced Fluorescence of Electronically-Excited He2 in a Supersonic Microcavity Plasma Jet

NASA Astrophysics Data System (ADS)

Su, Rui; Mironov, Andrey; Houlahan, Thomas, Jr.; Eden, J. Gary; LaboratoryOptical Physics; Engineering Team

2016-09-01

Laser-induced fluorescence (LIF) resulting from transitions between different electronic states of helium dimers generated within a microcavity plasma jet was studied with rotational resolution. In particular, the d3Σu+ , e3Πg and f3Σu+ states, all having electronic energies above 24 eV, are populated by a microplasma in 4 bar of helium gas and rotationally cooled through supersonic expansion. Analysis of two dimensional maps (spectrograms) of dimer emission spectra as a function of distance from the nozzle orifice indicates collisional coupling during the expansion between the lowest rotational levels of the e3Πg , f3Σu+ states and high rotational levels (around N=11) of the d3Σu+ state (all of which are in the v = 0 vibrational state). In an attempt to verify the coupling, a scanning dye laser (centered near 596 nm) pumps the b3Πg -> f3Σu+ transition of the molecule several hundred micrometers downstream of the nozzle. As a result, the emission intensities of relevant rotational lines are observed to be enhanced. This research shows the potential of utilizing microcavity plasma jets as a tool to study and manipulate the collisional dynamics of highly-excited diatomic molecules.

On the enhancement of p-11B fusion reaction rate in laser-driven plasma by α → p collisional energy transfer

NASA Astrophysics Data System (ADS)

Belloni, Fabio; Margarone, Daniele; Picciotto, Antonino; Schillaci, Francesco; Giuffrida, Lorenzo

2018-02-01

The possibility of triggering an avalanche reaction in laser-driven p-11B fusion by the effect of collisional energy transfer from α particles to protons has recently been debated, especially in connection to the high yield of α particles (4 × 108 per laser shot) achieved on engineered targets at the Prague Asterix Laser System (PALS), with a pulse of 500 J, 0.3 ns FWHM. We elucidate this controversial subject within the framework of a simple two-population model for protons, based on the binary collision theory in a plasma. We find an avalanche characteristic time of almost 1 μs for the 675 keV fusion cross section resonance in typical PALS plasma, upon idealized confinement conditions. This avalanche time is one order of magnitude higher than previously reported, meaning that no such process can substantially develop in plasma at the PALS on the 675 keV resonance, not even in the most optimistic confinement scenarios. Nevertheless, we put forward for further investigation that more realistic conditions for setting up the avalanche regime could rather be attained by suitably targeting the narrow 163 keV resonance in the fusion cross section, also in connection to recently proposed laser-driven magnetic trapping techniques.

Generation of post-collisional normal calc-alkaline and adakitic granites in the Tongbai orogen, central China

NASA Astrophysics Data System (ADS)

Zhang, Wen-Xiang; Zhu, Liu-Qin; Wang, Hao; Wu, Yuan-Bao

2018-01-01

Post-collisional granites are generally generated by partial melting of continental crust during orogenic extension. The occurrence of normal calc-alkaline granites following adakitic granites in a collisional orogen is frequently supposed as a sign of tectonic regime transition from compression to extension, which has been debated yet. In this paper, we present a comprehensive study of zircon U-Pb ages, Hf-O isotopes, as well as whole-rock major and trace elements and Sr-Nd isotopes, for Tongbai and Jigongshan post-collisional granitic plutons in the Tongbai orogen. Zircon U-Pb dating yields intrusion ages of ca. 140 and 135 Ma for the Tongbai and Jigongshan plutons, respectively, suggesting they are post-collisional granites. These granites are high-K calc-alkaline series, metaluminous to weakly peraluminous with A/CNK ratios of 0.85-1.08. The Tongbai gneissic granites are normal calc-alkaline granite, having variable SiO2 (61.93-76.74 wt%) and Sr/Y (2.9-38.9) and (La/Yb)N (1.7-30.1) ratios with variably negative Eu anomalies (0.41-0.92). They have relatively high initial Sr isotope ratios of 0.707571 to 0.710317, and low εNd(t) (- 15.74 to - 11.09) and εHf(t) (- 17.6 to - 16.9) values. Their Nd and Hf model ages range from 2.2 to 1.8 Ga and 2.3 to 2.2 Ga. On the contrary, the Jigongshan granites show higher SiO2 (66.56-72.11 wt%) and Sr/Y (30.1-182.0) and (La/Yb)N (27.4-91.4) ratios with insignificant Eu anomalies (0.73-1.00), belonging to adakitic granite. They have Isr = 0.707843-0.708366, εNd(t) = - 19.83 to - 17.59, and εHf(t) = - 26.0 to - 23.5. Their Nd and Hf model ages vary from ca. 2.5 to 2.4 Ga and ca. 2.8 to 2.6 Ga. The Tongbai and Jigongshan granites are characterized by mantle-like zircon δ18O values (5.17-5.46‰). These geochemical features suggest that the Tongbai and Jigongshan granites were derived from partial melting of Paleoproterozoic and Archean continental crust, respectively. Fractional crystallization affected the geochemical compositions of the Tongbai gneissic granites, while the compositions of the Jigongshan granites were mainly controlled by partial melting. The adakitic signatures of the Jigongshan granites were either inherited from their source or ascribed to more garnet in their residues. The voluminous post-collisional granites might form by the collapse of the thickened Tongbai orogenic root. The normal Tongbai gneissic granites occurred slightly earlier than the Jigongshan adakitic granites in the Tongbai orogen, suggesting that it is not a mandate to sign the tectonic transition from adakitic to normal calc-alkaline granites in post-collisional settings. Therefore, this study provides another example supporting the burst of voluminous post-collisional granites with different compositions as a consequence of the collapse of the thickened orogenic roots of collisional orogens.

A slowly evolving host moves first in symbiotic interactions

NASA Astrophysics Data System (ADS)

Damore, James; Gore, Jeff

2011-03-01

Symbiotic relationships, both parasitic and mutualistic, are ubiquitous in nature. Understanding how these symbioses evolve, from bacteria and their phages to humans and our gut microflora, is crucial in understanding how life operates. Often, symbioses consist of a slowly evolving host species with each host only interacting with its own sub-population of symbionts. The Red Queen hypothesis describes coevolutionary relationships as constant arms races with each species rushing to evolve an advantage over the other, suggesting that faster evolution is favored. Here, we use a simple game theoretic model of host- symbiont coevolution that includes population structure to show that if the symbionts evolve much faster than the host, the equilibrium distribution is the same as it would be if it were a sequential game where the host moves first against its symbionts. For the slowly evolving host, this will prove to be advantageous in mutualisms and a handicap in antagonisms. The model allows for symbiont adaptation to its host, a result that is robust to changes in the parameters and generalizes to continuous and multiplayer games. Our findings provide insight into a wide range of symbiotic phenomena and help to unify the field of coevolutionary theory.

Collisional-radiative calculations for the J = 0-1 lasing line of neon-like germanium under anisotropic excitation conditions

NASA Astrophysics Data System (ADS)

Bentotoche, M. S.; Inal, M. K.; Benmouna, M.

2018-02-01

A new asymmetry parameter characterizing the differences between the polarized π and σ gain components of the soft-x-ray J = 0-1 lasing line of neon-like ions is calculated in the case of Ge22+ assuming an electron distribution which is a weighted sum of an isotropic Maxwellian and a monoenergetic beam. Using a quasi steady-state collisional-radiative model, we determine in the weak amplification regime the relative populations of the upper M = 0 and lower M=0,+/- 1 magnetic sublevels of the lasing line as a function of electron density from 1020 to 2× {10}21 cm-3. This model includes inelastic and elastic collisional transitions, as well as spontaneous radiative decay between all the 337 M-sublevels arising from the 75 lowest-lying Ge22+ J-levels. The computations were performed for a temperature {T}{{e}} of the Maxwellian component between 1.2× {10}6 and 8× {10}6 K, a kinetic energy E 0 and a fraction f of the beam component in the ranges 1.5{--}20 {keV} and 0.1 % {--}10 % , respectively. The basic atomic data, such as level energies, radiative decay probabilities and inelastic collision strengths, were calculated with the flexible atomic code. However, some modifications of this code were made to get the collision strengths for transitions between M-sublevels due to impact with isotropic electrons as well as due to impact with an electron beam in the case of de-excitation. We find that the newly introduced asymmetry parameter may become significant under certain conditions of electron distribution corresponding to relatively low {T}{{e}} (1.2× {10}6{--}2.5× {10}6 K) and E 0 (3-6 keV). The results reported here may be useful in the evaluation of the polarization degree of the J = 0-1 x-ray laser output from a germanium plasma in the presence of fast directional electrons.

The coevolution of ova defensiveness with sperm competitiveness in house mice.

PubMed

Firman, Renée C; Gomendio, Montserrat; Roldan, Eduardo R S; Simmons, Leigh W

2014-04-01

Theoretical models have suggested that sperm competition can lead to increased ova resistance to fertilization. While there is some comparative evidence that this might be true, there is no experimental evidence to show that ova defensiveness evolves in response to sperm competition. We performed a series of in vitro fertilization assays to gauge the fertilizability of ova produced by female house mice from experimental populations that evolved either with or without sperm competition. Our analysis revealed that after 24 generations of experimental evolution, females that evolved under a polygamous regime produced more defensive ova than females that evolved under a monogamous regime. We therefore provide the first direct line of evidence that sperm competition can generate sexual conflict at the gametic level and lead to asymmetries in fertilization rates among populations. Our results show that females respond to sperm competition via fertilization barriers that have the potential to mediate sperm entry.

Do Close-in Giant Planets Orbiting Evolved Stars Prefer Eccentric Orbits?

NASA Astrophysics Data System (ADS)

Grunblatt, Samuel K.; Huber, Daniel; Gaidos, Eric; Lopez, Eric D.; Barclay, Thomas; Chontos, Ashley; Sinukoff, Evan; Van Eylen, Vincent; Howard, Andrew W.; Isaacson, Howard T.

2018-07-01

The NASA Kepler and K2 Missions have recently revealed a population of transiting giant planets orbiting moderately evolved, low-luminosity red giant branch stars. Here, we present radial velocity (RV) measurements of three of these systems, revealing significantly non-zero orbital eccentricities in each case. Comparing these systems with the known planet population suggests that close-in giant planets around evolved stars tend to have more eccentric orbits than those around main sequence stars. We interpret this as tentative evidence that the orbits of these planets pass through a transient, moderately eccentric phase where they shrink faster than they circularize due to tides raised on evolved host stars. Additional RV measurements of currently known systems, along with new systems discovered by the recently launched NASA Transiting Exoplanet Survey Satellite (TESS) mission, may constrain the timescale and mass dependence of this process.

Experimental evolution gone wild.

PubMed

Scheinin, M; Riebesell, U; Rynearson, T A; Lohbeck, K T; Collins, S

2015-05-06

Because of their large population sizes and rapid cell division rates, marine microbes have, or can generate, ample variation to fuel evolution over a few weeks or months, and subsequently have the potential to evolve in response to global change. Here we measure evolution in the marine diatom Skeletonema marinoi evolved in a natural plankton community in CO2-enriched mesocosms deployed in situ. Mesocosm enclosures are typically used to study how the species composition and biogeochemistry of marine communities respond to environmental shifts, but have not been used for experimental evolution to date. Using this approach, we detect a large evolutionary response to CO2 enrichment in a focal marine diatom, where population growth rate increased by 1.3-fold in high CO2-evolved lineages. This study opens an exciting new possibility of carrying out in situ evolution experiments to understand how marine microbial communities evolve in response to environmental change.

Dust distributions in debris disks: effects of gravity, radiation pressure and collisions

NASA Astrophysics Data System (ADS)

Krivov, A. V.; Löhne, T.; Sremčević, M.

2006-08-01

We model a typical debris disk, treated as an idealized ensemble of dust particles, exposed to stellar gravity and direct radiation pressure and experiencing fragmenting collisions. Applying the kinetic method of statistical physics, written in orbital elements, we calculate size and spatial distibutions expected in a steady-state disk, investigate timescales needed to reach the steady state, and calculate mass loss rates. Particular numerical examples are given for the debris disk around Vega. The disk should comprise a population of larger grains in bound orbits and a population of smaller particles in hyperbolic orbits. The cross section area is dominated by the smallest grains that still can stay in bound orbits, for Vega about 10 {μ m} in radius. The size distribution is wavy, implying secondary peaks in the size distribution at larger sizes. The radial profile of the pole-on surface density or the optical depth in the steady-state disk has a power-law index between about -1 and -2. It cannot be much steeper even if dust production is confined to a narrow planetesimal belt, because collisional grinding produces smaller and smaller grains, and radiation pressure pumps up their orbital eccentricities and spreads them outward, which flattens the radial profile. The timescales to reach a steady state depend on grain sizes and distance from the star. For Vega, they are about 1 Myr for grains up to some hundred {μ m} at 100 AU. The total mass of the Vega disk needed to produce the observed amount of micron and submillimeter-sized dust does not exceed several earth masses for an upper size limit of parent bodies of about 1 km. The collisional depletion of the disk occurs on Gyr timescales.

A coagulation-fragmentation model for the turbulent growth and destruction of preplanetesimals

NASA Astrophysics Data System (ADS)

Johansen, A.; Brauer, F.; Dullemond, C.; Klahr, H.; Henning, T.

2008-08-01

To treat the problem of growing protoplanetary disc solids across the meter barrier, we consider a very simplified two-component coagulation-fragmentation model that consists of macroscopic boulders and smaller dust grains, the latter being the result of catastrophic collisions between the boulders. Boulders in turn increase their radii by sweeping up the dust fragments. An analytical solution of the dynamical equations predicts that growth by coagulation-fragmentation can be efficient and allow agglomeration of 10-m-sized objects within the time-scale of the radial drift. These results are supported by computer simulations of the motion of boulders and fragments in 3-D time-dependent magnetorotational turbulence. However allowing the fragments to diffuse freely out of the sedimentary layer of boulders drastically reduces the density of both boulders and fragments in the mid-plane, and thus also the growth of the boulder radius. The reason is that the turbulent diffusion time-scale is so much shorter than the collisional time-scale that dust fragments leak out of the mid-plane layer before they can be swept up by the boulders there. Our conclusion that coagulation-fragmentation is not an efficient way to grow across the meter barrier in fully turbulent protoplanetary discs confirms recent results by Brauer, Dullemond, & Henning who solved the coagulation equation in a parameterised turbulence model with collisional fragmentation, cratering, radial drift, and a range of particle sizes. We find that a relatively small population of boulders in a sedimentary mid-plane layer can populate the entire vertical extent of the disc with small grains and that these grains are not first generation dust, but have been through several agglomeration-destruction cycles during the simulations.

Studies of Rotationally and Vibrationally Inelastic Collisions of NaK with Atomic Perturbers

NASA Astrophysics Data System (ADS)

Richter, Kara M.

This dissertation discusses investigations of vibrationally and rotationally inelastic collisions of NaK with argon, helium and potassium as collision partners. We have investigated collisions of NaK molecules in the 2(A) 1Sigma+, state with argon and helium collision partners in a laser-induced fluorescence (LIF) experiment. The pump laser prepares the molecules in particular ro-vibrational (v, J) levels in the 2(A) 1Sigma+, state. These excited molecules then emit fluorescence as they make transitions back to the ground [2(X)1Sigma +] state, and this fluorescence is collected by a Bomem Fourier-transform spectrometer. Weak collisional satellite lines appear flanking strong, direct lines in the recorded spectra. These satellite lines are due to collisions of the NaK molecule in the 2(A)1Sigma+, state with noble gas and alkali atom perturbers, which carry population to nearby rotational levels [(v, J) →(v, J + DeltaJ)] or to various rotational levels of nearby vibrational levels, [(v, J)→ (v + Deltav, J + DeltaJ)]. Ratios of the intensity of each collisional line to the intensity of the direct line then yields information pertaining to the transfer of population in the collision. Our results show a propensity for DeltaJ = even collisions of NaK with noble gas atoms, which is slightly more pronounced for collisions with helium than with argon. Such a DeltaJ = even propensity was not observed in the vibrationally inelastic collisions. Although it would be desirable to operate in the single collision regime, practical considerations make that difficult to achieve. Therefore, we have developed a method to estimate the effects of multiple collisions on our measured rate coefficients and have obtained approximate corrected values.

Collisional radiative model for Ar-O2 mixture plasma with fully relativistic fine structure cross sections

NASA Astrophysics Data System (ADS)

Priti, Gangwar, Reetesh Kumar; Srivastava, Rajesh

2018-04-01

A collisional radiative (C-R) model has been developed to diagnose the rf generated Ar-O2 (0%-5%) mixture plasma at low temperatures. Since in such plasmas the most dominant process is an electron impact excitation process, we considered several electron impact fine structure transitions in an argon atom from its ground as well as excited states. The cross-sections for these transitions have been obtained using the reliable fully relativistic distorted wave theory. Processes which account for the coupling of argon with the oxygen molecules have been further added to the model. We couple our model to the optical spectroscopic measurements reported by Jogi et al. [J. Phys. D: Appl. Phys. 47, 335206 (2014)]. The plasma parameters, viz. the electron density (ne) and the electron temperature (Te) as a function of O2 concentration have been obtained using thirteen intense emission lines out of 3p54p → 3p54s transitions observed in their spectroscopic measurements. It is found that as the content of O2 in Ar increases from 0%-5%, Te increases in the range 0.85-1.7 eV, while the electron density decreases from 2.76 × 1012-2.34 × 1011 cm-3. The Ar-3p54s (1si) fine-structure level populations at our extracted plasma parameters are found to be in very good agreement with those obtained from the measurements. Furthermore, we have estimated the individual contributions coming from the ground state, 1si manifolds and cascade contributions to the population of the radiating Ar-3p54p (2pi) states as a function of a trace amount of O2. Such information is very useful to understand the importance of various processes occurring in the plasma.

The Predicted Growth of the Low Earth Orbit Space Debris Environment: An Assessment of Future Risk for Spacecraft

NASA Technical Reports Server (NTRS)

Krisko, Paula H.

2007-01-01

Space debris is a worldwide-recognized issue concerning the safety of commercial, military, and exploration spacecraft. The space debris environment includes both naturally occuring meteoroids and objects in Earth orbit that are generated by human activity, termed orbital debris. Space agencies around the world are addressing the dangers of debris collisions to both crewed and robotic spacecraft. In the United States, the Orbital Debris Program Office at the NASA Johnson Space Center leads the effort to categorize debris, predict its growth, and formulate mitigation policy for the environment from low Earth orbit (LEO) through geosynchronous orbit (GEO). This paper presents recent results derived from the NASA long-term debris environment model, LEGEND. It includes the revised NASA sodium potassium droplet model, newly corrected for a factor of two over-estimation of the droplet population. The study indicates a LEO environment that is already highly collisionally active among orbital debris larger than 1 cm in size. Most of the modeled collision events are non-catastrophic (i.e., They lead to a cratering of the target, but no large scale fragmentation.). But they are potentially mission-ending, and take place between impactors smaller than 10 cm and targets larger than 10 cm. Given the small size of the impactor these events would likely be undetectable by present-day measurement means. The activity continues into the future as would be expected. Impact rates of about four per year are predicted by the current study within the next 30 years, with the majority of targets being abandoned intacts (spent upper stages and spacecraft). Still, operational spacecraft do show a small collisional activity, one that increases over time as the small fragment population increases.

Space Debris Environment Remediation Concepts

NASA Technical Reports Server (NTRS)

Johnson, Nicholas L.; Klinkrad, Heiner

2009-01-01

Long-term projections of the space debris environment indicate that even drastic measures, such as an immediate, complete halt of launch and release activities, will not result in a stable environment of man-made space objects. Collision events between already existing space hardware will within a few decades start to dominate the debris population, and result in a net increase of the space debris population, also in size regimes which may cause further catastrophic collisions. Such a collisional cascading will ultimately lead to a run-away situation ("Kessler syndrome"), with no further possibility of human intervention. The International Academy of Astronautics (IAA) has been investigating the status and the stability of the space debris environment in several studies by first looking into space traffic management possibilities and then investigating means of mitigating the creation of space debris. In an ongoing activity, an IAA study group looks at ways of active space debris environment remediation. In contrast to the former mitigation study, the current activity concentrates on the active removal of small and large objects, such as defunct spacecraft, orbital stages, and mission-related objects, which serve as a latent mass reservoir that fuels initial catastrophic collisions and later collisional cascading. The paper will outline different mass removal concepts, e.g. based on directed energy, tethers (momentum exchange or electrodynamic), aerodynamic drag augmentation, solar sails, auxiliary propulsion units, retarding surfaces, or on-orbit capture. Apart from physical principles of the proposed concepts, their applicability to different orbital regimes, and their effectiveness concerning mass removal efficiency will be analyzed. The IAA activity on space debris environment remediation is a truly international project which involves more than 23 contributing authors from 9 different nations.

Conservative Bin-to-Bin Fractional Collisions

DTIC Science & Technology

2016-06-28

BIN FRACTIONAL COLLISIONS Robert Martin ERC INC., SPACECRAFT PROPULSION BRANCH AIR FORCE RESEARCH LABORATORY EDWARDS AIR FORCE BASE, CA USA 30th...IMPORTANCE OF COLLISION PHYSICS Important Collisions in Spacecraft Propulsion : Discharge and Breakdown in FRC Collisional Radiative Cooling/Ionization...UNLIMITED; PA #16326 3 / 18 IMPORTANCE OF COLLISION PHYSICS Important Collisions in Spacecraft Propulsion : Discharge and Breakdown in FRC Collisional

Kinetic water-bag model of global collisional drift waves and ion temperature gradient instabilities in cylindrical geometry

NASA Astrophysics Data System (ADS)

Gravier, E.; Plaut, E.

2013-04-01

Collisional drift waves and ion temperature gradient (ITG) instabilities are studied using a linear water-bag kinetic model [P. Morel et al., Phys. Plasmas 14, 112109 (2007)]. An efficient spectral method, already validated in the case of drift waves instabilities [E. Gravier et al., Eur. Phys. J. D 67, 7 (2013)], allows a fast solving of the global linear problem in cylindrical geometry. The comparison between the linear ITG instability properties thus computed and the ones given by the COLUMBIA experiment [R. G. Greaves et al., Plasma Phys. Controlled Fusion 34, 1253 (1992)] shows a qualitative agreement. Moreover, the transition between collisional drift waves and ITG instabilities is studied theoretically as a function of the ion temperature profile.

Collisional dependence of Alfvén mode saturation in tokamaks

DOE PAGES

Zhou, Muni; White, Roscoe

2016-10-26

Saturation of Alfvén modes driven unstable by a distribution of high energy particles as a function of collisionality is investigated with a guiding center code, using numerical eigenfunctions produced by linear theory and numerical high energy particle distributions. The most important resonance is found and it is shown that when the resonance domain is bounded, not allowing particles to collisionlessly escape, the saturation amplitude is given by the balance of the resonance mixing time with the time for nearby particles to collisionally diffuse across the resonance width. Finally, saturation amplitudes are in agreement with theoretical predictions as long as themore » mode amplitude is not so large that it produces stochastic loss from the resonance domain.« less

Collisional dependence of Alfvén mode saturation in tokamaks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, Muni; White, Roscoe

Saturation of Alfvén modes driven unstable by a distribution of high energy particles as a function of collisionality is investigated with a guiding center code, using numerical eigenfunctions produced by linear theory and numerical high energy particle distributions. The most important resonance is found and it is shown that when the resonance domain is bounded, not allowing particles to collisionlessly escape, the saturation amplitude is given by the balance of the resonance mixing time with the time for nearby particles to collisionally diffuse across the resonance width. Finally, saturation amplitudes are in agreement with theoretical predictions as long as themore » mode amplitude is not so large that it produces stochastic loss from the resonance domain.« less

Method to estimate the electron temperature and neutral density in a plasma from spectroscopic measurements using argon atom and ion collisional-radiative models.

PubMed

Sciamma, Ella M; Bengtson, Roger D; Rowan, W L; Keesee, Amy; Lee, Charles A; Berisford, Dan; Lee, Kevin; Gentle, K W

2008-10-01

We present a method to infer the electron temperature in argon plasmas using a collisional-radiative model for argon ions and measurements of electron density to interpret absolutely calibrated spectroscopic measurements of argon ion (Ar II) line intensities. The neutral density, and hence the degree of ionization of this plasma, can then be estimated using argon atom (Ar I) line intensities and a collisional-radiative model for argon atoms. This method has been tested for plasmas generated on two different devices at the University of Texas at Austin: the helicon experiment and the helimak experiment. We present results that show good correlation with other measurements in the plasma.

Dissipation of ionospheric irregularities by wave-particle and collisional interactions

NASA Technical Reports Server (NTRS)

Bernhardt, P. A.; Pongratz, M. B.; Gray, S. P.; Thomsen, M. F.

1982-01-01

The nonlinear dissipation of plasma irregularities aligned parallel to an ambient magnetic field is studied numerically using a model which employs both wave-particle and collisional diffusion. A wave-particle diffusion coefficient derived from a local theory of the universal drift instability is used. This coefficient is effective in regions of nonzero plasma gradients and produces triangular-shaped irregularities with spectra which vary as f to the -4th, where f is the spatial frequency. Collisional diffusion acts rapidly on the vertices of the irregularities to reduce their amplitude. The simultaneous action of the two dissipative processes is more efficient than collisions acting alone. In this model, wave-particle diffusion mimics the forward cascade process of wave-wave coupling.

A thick cloud of Neptune Trojans and their colors.

PubMed

Sheppard, Scott S; Trujillo, Chadwick A

2006-07-28

The dynamical and physical properties of asteroids offer one of the few constraints on the formation, evolution, and migration of the giant planets. Trojan asteroids share a planet's semimajor axis but lead or follow it by about 60 degrees near the two triangular Lagrangian points of gravitational equilibrium. Here we report the discovery of a high-inclination Neptune Trojan, 2005 TN(53). This discovery demonstrates that the Neptune Trojan population occupies a thick disk, which is indicative of "freeze-in" capture instead of in situ or collisional formation. The Neptune Trojans appear to have a population that is several times larger than the Jupiter Trojans. Our color measurements show that Neptune Trojans have statistically indistinguishable slightly red colors, which suggests that they had a common formation and evolutionary history and are distinct from the classical Kuiper Belt objects.

Predictable evolution toward flightlessness in volant island birds.

PubMed

Wright, Natalie A; Steadman, David W; Witt, Christopher C

2016-04-26

Birds are prolific colonists of islands, where they readily evolve distinct forms. Identifying predictable, directional patterns of evolutionary change in island birds, however, has proved challenging. The "island rule" predicts that island species evolve toward intermediate sizes, but its general applicability to birds is questionable. However, convergent evolution has clearly occurred in the island bird lineages that have undergone transitions to secondary flightlessness, a process involving drastic reduction of the flight muscles and enlargement of the hindlimbs. Here, we investigated whether volant island bird populations tend to change shape in a way that converges subtly on the flightless form. We found that island bird species have evolved smaller flight muscles than their continental relatives. Furthermore, in 366 populations of Caribbean and Pacific birds, smaller flight muscles and longer legs evolved in response to increasing insularity and, strikingly, the scarcity of avian and mammalian predators. On smaller islands with fewer predators, birds exhibited shifts in investment from forelimbs to hindlimbs that were qualitatively similar to anatomical rearrangements observed in flightless birds. These findings suggest that island bird populations tend to evolve on a trajectory toward flightlessness, even if most remain volant. This pattern was consistent across nine families and four orders that vary in lifestyle, foraging behavior, flight style, and body size. These predictable shifts in avian morphology may reduce the physical capacity for escape via flight and diminish the potential for small-island taxa to diversify via dispersal.

Both size-frequency distribution and sub-populations of the main-belt asteroid population are consistent with YORP-induced rotational fission

NASA Astrophysics Data System (ADS)

Jacobson, S.; Scheeres, D.; Rossi, A.; Marzari, F.; Davis, D.

2014-07-01

From the results of a comprehensive asteroid-population-evolution model, we conclude that the YORP-induced rotational-fission hypothesis has strong repercussions for the small size end of the main-belt asteroid size-frequency distribution and is consistent with observed asteroid-population statistics and with the observed sub-populations of binary asteroids, asteroid pairs and contact binaries. The foundation of this model is the asteroid-rotation model of Marzari et al. (2011) and Rossi et al. (2009), which incorporates both the YORP effect and collisional evolution. This work adds to that model the rotational fission hypothesis (i.e. when the rotation rate exceeds a critical value, erosion and binary formation occur; Scheeres 2007) and binary-asteroid evolution (Jacobson & Scheeres, 2011). The YORP-effect timescale for large asteroids with diameters D > ˜ 6 km is longer than the collision timescale in the main belt, thus the frequency of large asteroids is determined by a collisional equilibrium (e.g. Bottke 2005), but for small asteroids with diameters D < ˜ 6 km, the asteroid-population evolution model confirms that YORP-induced rotational fission destroys small asteroids more frequently than collisions. Therefore, the frequency of these small asteroids is determined by an equilibrium between the creation of new asteroids out of the impact debris of larger asteroids and the destruction of these asteroids by YORP-induced rotational fission. By introducing a new source of destruction that varies strongly with size, YORP-induced rotational fission alters the slope of the size-frequency distribution. Using the outputs of the asteroid-population evolution model and a 1-D collision evolution model, we can generate this new size-frequency distribution and it matches the change in slope observed by the SKADS survey (Gladman 2009). This agreement is achieved with both an accretional power-law or a truncated ''Asteroids were Born Big'' size-frequency distribution (Weidenschilling 2010, Morbidelli 2009). The binary-asteroid evolution model is highly constrained by the modeling done in Jacobson & Scheeres, and therefore the asteroid-population evolution model has only two significant free parameters: the ratio of low-to-high-mass-ratio binaries formed after rotational fission events and the mean strength of the binary YORP (BYORP) effect. Using this model, we successfully reproduce the observed small-asteroid sub-populations, which orthogonally constrain the two free parameters. We find the outcome of rotational fission most likely produces an initial mass-ratio fraction that is four to eight times as likely to produce high-mass-ratio systems as low-mass-ratio systems, which is consistent with rotational fission creating binary systems in a flat distribution with respect to mass ratio. We also find that the mean of the log-normal BYORP coefficient distribution B ≈ 10^{-2}.

An examination of problem-based teaching and learning in population genetics and evolution using EVOLVE, a computer simulation

NASA Astrophysics Data System (ADS)

Soderberg, Patti; Price, Frank

2003-01-01

This study describes a lesson in which students engaged in inquiry in evolutionary biology in order to develop a better understanding of the concepts and reasoning skills necessary to support knowledge claims about changes in the genetic structure of populations, also known as microevolution. This paper describes how a software simulation called EVOLVE can be used to foster discussions about the conceptual knowledge used by advanced secondary or introductory college students when investigating the effects of natural selection on hypothetical populations over time. An experienced professor's use and rationale of a problem-based lesson using the simulation is examined. Examples of student misconceptions and naïve (incomplete) conceptions are described and an analysis of the procedural knowledge for experimenting with the computer model is provided. The results of this case study provide a model of how EVOLVE can be used to engage students in a complex problem-solving experience that encourages student meta-cognitive reflection about their understanding of evolution at the population level. Implications for teaching are provided and ways to improve student learning and problem solving in population genetics are suggested.

More rapid climate change promotes evolutionary rescue through selection for increased dispersal distance

PubMed Central

Boeye, Jeroen; Travis, Justin M J; Stoks, Robby; Bonte, Dries

2013-01-01

Species can either adapt to new conditions induced by climate change or shift their range in an attempt to track optimal environmental conditions. During current range shifts, species are simultaneously confronted with a second major anthropogenic disturbance, landscape fragmentation. Using individual-based models with a shifting climate window, we examine the effect of different rates of climate change on the evolution of dispersal distances through changes in the genetically determined dispersal kernel. Our results demonstrate that the rate of climate change is positively correlated to the evolved dispersal distances although too fast climate change causes the population to crash. When faced with realistic rates of climate change, greater dispersal distances evolve than those required for the population to keep track of the climate, thereby maximizing population size. Importantly, the greater dispersal distances that evolve when climate change is more rapid, induce evolutionary rescue by facilitating the population in crossing large gaps in the landscape. This could ensure population persistence in case of range shifting in fragmented landscapes. Furthermore, we highlight problems in using invasion speed as a proxy for potential range shifting abilities under climate change. PMID:23467649

Acid-adapted strains of Escherichia coli K-12 obtained by experimental evolution.

PubMed

Harden, Mark M; He, Amanda; Creamer, Kaitlin; Clark, Michelle W; Hamdallah, Issam; Martinez, Keith A; Kresslein, Robert L; Bush, Sean P; Slonczewski, Joan L

2015-03-01

Enteric bacteria encounter a wide range of pHs throughout the human intestinal tract. We conducted experimental evolution of Escherichia coli K-12 to isolate clones with increased fitness during growth under acidic conditions (pH 4.5 to 4.8). Twenty-four independent populations of E. coli K-12 W3110 were evolved in LBK medium (10 g/liter tryptone, 5 g/liter yeast extract, 7.45 g/liter KCl) buffered with homopiperazine-N,N'-bis-2-(ethanosulfonic acid) and malate at pH 4.8. At generation 730, the pH was decreased to 4.6 with HCl. By 2,000 generations, all populations had achieved higher endpoint growth than the ancestor at pH 4.6 but not at pH 7.0. All evolving populations showed a progressive loss of activity of lysine decarboxylase (CadA), a major acid stress enzyme. This finding suggests a surprising association between acid adaptation and moderation of an acid stress response. At generation 2,000, eight clones were isolated from four populations, and their genomes were sequenced. Each clone showed between three and eight missense mutations, including one in a subunit of the RNA polymerase holoenzyme (rpoB, rpoC, or rpoD). Missense mutations were found in adiY, the activator of the acid-inducible arginine decarboxylase (adiA), and in gcvP (glycine decarboxylase), a possible acid stress component. For tests of fitness relative to that of the ancestor, lacZ::kan was transduced into each strain. All acid-evolved clones showed a high fitness advantage at pH 4.6. With the cytoplasmic pH depressed by benzoate (at external pH 6.5), acid-evolved clones showed decreased fitness; thus, there was no adaptation to cytoplasmic pH depression. At pH 9.0, acid-evolved clones showed no fitness advantage. Thus, our acid-evolved clones showed a fitness increase specific to low external pH. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Acid-Adapted Strains of Escherichia coli K-12 Obtained by Experimental Evolution

PubMed Central

Harden, Mark M.; He, Amanda; Creamer, Kaitlin; Clark, Michelle W.; Hamdallah, Issam; Martinez, Keith A.; Kresslein, Robert L.; Bush, Sean P.

2015-01-01

Enteric bacteria encounter a wide range of pHs throughout the human intestinal tract. We conducted experimental evolution of Escherichia coli K-12 to isolate clones with increased fitness during growth under acidic conditions (pH 4.5 to 4.8). Twenty-four independent populations of E. coli K-12 W3110 were evolved in LBK medium (10 g/liter tryptone, 5 g/liter yeast extract, 7.45 g/liter KCl) buffered with homopiperazine-N,N′-bis-2-(ethanosulfonic acid) and malate at pH 4.8. At generation 730, the pH was decreased to 4.6 with HCl. By 2,000 generations, all populations had achieved higher endpoint growth than the ancestor at pH 4.6 but not at pH 7.0. All evolving populations showed a progressive loss of activity of lysine decarboxylase (CadA), a major acid stress enzyme. This finding suggests a surprising association between acid adaptation and moderation of an acid stress response. At generation 2,000, eight clones were isolated from four populations, and their genomes were sequenced. Each clone showed between three and eight missense mutations, including one in a subunit of the RNA polymerase holoenzyme (rpoB, rpoC, or rpoD). Missense mutations were found in adiY, the activator of the acid-inducible arginine decarboxylase (adiA), and in gcvP (glycine decarboxylase), a possible acid stress component. For tests of fitness relative to that of the ancestor, lacZ::kan was transduced into each strain. All acid-evolved clones showed a high fitness advantage at pH 4.6. With the cytoplasmic pH depressed by benzoate (at external pH 6.5), acid-evolved clones showed decreased fitness; thus, there was no adaptation to cytoplasmic pH depression. At pH 9.0, acid-evolved clones showed no fitness advantage. Thus, our acid-evolved clones showed a fitness increase specific to low external pH. PMID:25556191

The contribution of comets in Near-Earth Object and Main Belt populations and the role of collisions in the physical properties of members of these populations.

NASA Astrophysics Data System (ADS)

Michel, P.

2008-09-01

The population of Near-Earth Objects (NEOs) is composed of small bodies of various origins. Groundbased observational programs have been developed to perform their inventory and to determine their physical properties. However, these observations contain many biases and the total population of NEOs with diameters down to a few hundreds of meters has not been identified yet. In recent years, the main sources of NEOs have been characterized [1]. Most of these bodies come from the asteroid main belt and the Jupiter-family comets and their source regions are linked to transport mechanisms (mean motion and secular resonances, slow diffusion mechanisms) to the NEO-space. It has then been possible to construct a complete model of the steady-state orbital, size and albedo distribution of NEOs and to determine the level of contribution of each of their sources, including the contribution of Jupiter-family comets. However, nothing is known regarding the contribution of longperiod comets. Physical observations have been conducted in order to identify potential dormant or extinct comets among small bodies in the NEO population and to determine the fraction of "comet candidates within the total NEO population. Combining the results of these observations with our model of NEO population to evaluate source region probabilities [1], it was found that 8 +/- 5% of the total asteroid-like NEO population may have originated as comets from the outer Solar System [2]. In the population of Main Belt (MB) asteroids, three members are known to display transient comet-like physical characteristics, including prolonged periods of dust emission leading to the formation of radiation pressure-swept tails [3]. These physical properties are most naturally explained as the result of sub-limation of near-surface ice from what are, dynamically, mainbelt asteroids (hence the name "main-belt comets" (MBCs) or, equivalently "icy asteroids"). No pausible dynamical path to the asteroid belt from the cometary reservoirs in the Oort cloud or Kuiper belt has been established. Thus, we may have an unsuspected icy region closer to the Sun than expected. However, it has also been suggested that numerous comets may have been captured during a violent period of planetary orbital evolution in the early stages of our Solar System [4]. Most of these bodies experience collisions during their lifetime, which can either disrupt them or modify their physical properties. In particular, collisions are suspected to be the triggering mechanism for the activation of MBCs. Thus the collisional process needs a good understanding in order to determine its contribution in the evolution of these small bodies, as a function of their physical properties. We have recently made a major improvement in the simulations of a small body disruption by introducing a model of fragmentation of porous material which will allows us to study the impact process on cometary bodies [5]. Moreover, for bodies dominated by gravity, our simulations includes the explicit computation of the formation of aggregates during the gravitational reaccumulation of small fragments, allowing us to obtain information on their spin, the number of boulders composing them or lying on their surface, and their shape. We will present the first and preliminary results of this process taking as examples some asteroid families that we reproduced successfully with our previous simulations [6], [7], [8], [9], [10], and their possible implications on the properties of small bodies generated by a disruption. Such information can for instance be compared with data provided by the Japanese space mission Hayabusa of the asteroid Itokawa, a body now understood to be a fragment of a larger parent body. For the population of comets, improving our understanding of their collisional response can then allow us to better characterize their collisional evolution, lifetime and other properties [11] which can have some implications on their contribution in "asteroidal" populations. It is also clear that future space missions to small bodies devoted to precise insitu analysis and sample return will allow us to improve our understanding on the physical properties of these objects, and to check whether our theoretical and numerical works are valid.

Modeling misidentification errors in capture-recapture studies using photographic identification of evolving marks

USGS Publications Warehouse

Yoshizaki, J.; Pollock, K.H.; Brownie, C.; Webster, R.A.

2009-01-01

Misidentification of animals is potentially important when naturally existing features (natural tags) are used to identify individual animals in a capture-recapture study. Photographic identification (photoID) typically uses photographic images of animals' naturally existing features as tags (photographic tags) and is subject to two main causes of identification errors: those related to quality of photographs (non-evolving natural tags) and those related to changes in natural marks (evolving natural tags). The conventional methods for analysis of capture-recapture data do not account for identification errors, and to do so requires a detailed understanding of the misidentification mechanism. Focusing on the situation where errors are due to evolving natural tags, we propose a misidentification mechanism and outline a framework for modeling the effect of misidentification in closed population studies. We introduce methods for estimating population size based on this model. Using a simulation study, we show that conventional estimators can seriously overestimate population size when errors due to misidentification are ignored, and that, in comparison, our new estimators have better properties except in cases with low capture probabilities (<0.2) or low misidentification rates (<2.5%). ?? 2009 by the Ecological Society of America.

Evolutionary Instability of Symbiotic Function in Bradyrhizobium japonicum

PubMed Central

Sachs, Joel L.; Russell, James E.; Hollowell, Amanda C.

2011-01-01

Bacterial mutualists are often acquired from the environment by eukaryotic hosts. However, both theory and empirical work suggest that this bacterial lifestyle is evolutionarily unstable. Bacterial evolution outside of the host is predicted to favor traits that promote an independent lifestyle in the environment at a cost to symbiotic function. Consistent with these predictions, environmentally-acquired bacterial mutualists often lose symbiotic function over evolutionary time. Here, we investigate the evolutionary erosion of symbiotic traits in Bradyrhizobium japonicum, a nodulating root symbiont of legumes. Building on a previous published phylogeny we infer loss events of nodulation capability in a natural population of Bradyrhizobium, potentially driven by mutation or deletion of symbiosis loci. Subsequently, we experimentally evolved representative strains from the symbiont population under host-free in vitro conditions to examine potential drivers of these loss events. Among Bradyrhizobium genotypes that evolved significant increases in fitness in vitro, two exhibited reduced symbiotic quality, but no experimentally evolved strain lost nodulation capability or evolved any fixed changes at six sequenced loci. Our results are consistent with trade-offs between symbiotic quality and fitness in a host free environment. However, the drivers of loss-of-nodulation events in natural Bradyrhizobium populations remain unknown. PMID:22073160

Rotational relaxation of fluoromethane molecules in low-temperature collisions with buffer-gas helium

NASA Astrophysics Data System (ADS)

Li, Xingjia; Xu, Liang; Yin, Yanning; Xu, Supeng; Xia, Yong; Yin, Jianping

2016-06-01

We propose a method to study the rotational relaxation of polar molecules [here taking fluoromethane (CH3F ) as an example] in collisions with 3.5 K buffer-gas helium (He) atoms by using an electrostatic guiding technique. The dependence of the guiding signal of CH3F on the injected He flux and the dependence of the guiding efficiency of CH3F on its rotational temperature are investigated both theoretically and experimentally. By comparing the experimental and simulated results, we find that the translational and rotational temperatures of the buffer-gas cooled CH3F molecules can reach to about 5.48 and 0.60 K, respectively, and the ratio between the translational and average rotational collisional cross sections of CH3F -He is γ =σt/σr=36.49 ±6.15 . In addition, the slowing, cooling, and boosting effects of the molecular beam with different injected He fluxes are also observed and their forming conditions are investigated in some detail. Our study shows that our proposed method can not only be used to measure the translational and rotational temperatures of the buffer-gas cooled molecules, but also to measure the ratio of the translational collisional cross section to the average rotational collisional cross section, and even to measure the average rotational collisional cross section when the translational collisional cross section is measured by fitting the lifetime of molecule signal to get a numerical solution from the diffusion equation of buffer-gas He atoms in the cell.

The maintenance of sex: Ronald Fisher meets the Red Queen.

PubMed

Green, David; Mason, Chris

2013-08-21

Sex in higher diploids carries a two-fold cost of males that should reduce its fitness relative to cloning, and result in its extinction. Instead, sex is widespread and clonal species face early obsolescence. One possible reason is that sex is an adaptation that allows organisms to respond more effectively to endless changes in their environment. The purpose of this study was to model mutation and selection in a diploid organism in an evolving environment and ascertain their support for sex. We used a computational approach to model finite populations where a haploid environment subjects a diploid host to endlessly evolving change. Evolution in both populations is primarily through adoption of novel advantageous mutations within a large allele space. Sex outcompetes cloning by two complementary mechanisms. First, sexual diploids adopt advantageous homozygous mutations more rapidly than clonal ones under conditions of lag load (the gap between the actual adaptation of the diploid population and its theoretical optimum). This rate advantage can offset the higher fecundity of cloning. Second, a relative advantage to sex emerges where populations are significantly polymorphic, because clonal polymorphism runs the risk of clonal interference caused by selection on numerous lines of similar adaptation. This interference extends allele lifetime and reduces the rate of adaptation. Sex abolishes the interference, making selection faster and elevating population fitness. Differences in adaptation between sexual and clonal populations increase markedly with the number of loci under selection, the rate of mutation in the host, and a rapidly evolving environment. Clonal interference in these circumstances leads to conditions where the greater fecundity of clones is unable to offset their poor adaptation. Sexual and clonal populations then either co-exist, or sex emerges as the more stable evolutionary strategy. Sex can out-compete clones in a rapidly evolving environment, such as that characterized by pathogens, where clonal interference reduces the adaptation of clonal populations and clones adopt advantageous mutations more slowly. Since all organisms carry parasitic loads, the model is of potentially general applicability.

Influence of non-collisional laser heating on the electron dynamics in dielectric materials

NASA Astrophysics Data System (ADS)

Barilleau, L.; Duchateau, G.; Chimier, B.; Geoffroy, G.; Tikhonchuk, V.

2016-12-01

The electron dynamics in dielectric materials induced by intense femtosecond laser pulses is theoretically addressed. The laser driven temporal evolution of the energy distribution of electrons in the conduction band is described by a kinetic Boltzmann equation. In addition to the collisional processes for energy transfer such as electron-phonon-photon and electron-electron interactions, a non-collisional process for photon absorption in the conduction band is included. It relies on direct transitions between sub-bands of the conduction band through multiphoton absorption. This mechanism is shown to significantly contribute to the laser heating of conduction electrons for large enough laser intensities. It also increases the time required for the electron distribution to reach the equilibrium state as described by the Fermi-Dirac statistics. Quantitative results are provided for quartz irradiated by a femtosecond laser pulse with a wavelength of 800 nm and for intensities in the range of tens of TW cm-2, lower than the ablation threshold. The change in the energy deposition induced by this non-collisional heating process is expected to have a significant influence on the laser processing of dielectric materials.

The rotational excitation of HF by H

NASA Astrophysics Data System (ADS)

Desrousseaux, Benjamin; Lique, François

2018-06-01

The HF molecule is a key tracer of molecular hydrogen in diffuse interstellar medium (ISM). Accurate modelling of the HF abundance in such media requires one to model its excitation by both radiation and collisions. In diffuse ISM, the dominant collisional partners are atomic and molecular hydrogen. We report quantum time-independent calculations of collisional cross-sections and rate coefficients for the rotational excitation of HF by H. The reactive hydrogen exchange channels are taken into account in the scattering calculations. For the first time, HF-H rate coefficients are provided for temperature ranging from 10 to 500 K. The strongest collision-induced rotational HF transitions are those with Δj = 1, and the order of magnitude of the new HF-H rate coefficients is similar to that of the HF-H2 ones previously computed. As a first application, we simulate the excitation of HF by both H and H2 in typical diffuse ISM. We show that, depending on the rotational transition, hydrogen atoms increase or decrease the simulated excitation temperatures compared to collisional excitation only due to H2 molecules. Such results suggest that the new HF-H collisional data have to be used for properly modelling the abundance of HF in diffuse ISM.

H2-broadening, shifting and mixing coefficients of the doublets in the ν2 and ν4 bands of PH3 at room temperature

NASA Astrophysics Data System (ADS)

Salem, Jamel; Blanquet, Ghislain; Lepère, Muriel; Younes, Rached ben

2018-05-01

The broadening, shifting and mixing coefficients of the doublet spectral lines in the ν2 and ν4 bands of PH3 perturbed by H2 have been determined at room temperature. Indeed, the collisional spectroscopic parameters: intensities, line widths, line shifts and line mixing parameters, are all grouped together in the collisional relaxation matrix. To analyse the collisional process and physical effects on spectra of phosphine (PH3), we have used the measurements carried out using a tunable diode-laser spectrometer in the ν2 and ν4 bands of PH3 perturbed by hydrogen (H2) at room temperature. The recorded spectra are fitted by the Voigt profile and the speed-dependent uncorrelated hard collision model of Rautian and Sobelman. These profiles are developed in the studies of isolated lines and are modified to account for the line mixing effects in the overlapping lines. The line widths, line shifts and line mixing parameters are given for six A1 and A2 doublet lines with quantum numbers K = 3n, (n = 1, 2, …) and overlapped by collisional broadening at pressures of less than 50 mbar.

Collisionality and temperature dependence of the edge main-ion co-current rotation profile feature on DIII-D

NASA Astrophysics Data System (ADS)

Haskey, Shaun; Grierson, Brian; Ashourvan, Arash; Battaglia, Devon; Chrystal, Colin; Burrell, Keith; Groebner, Richard; Degrassie, John; Stagner, Luke; Stoltzfus-Dueck, Timothy; Pablant, Novimir

2017-10-01

A new edge main-ion (D+) CER system and upgraded edge impurity system are revealing clear differences between the main-ion and dominant impurity (C6+) toroidal rotation from the pedestal top to the scrape off layer on DIII-D with implications for intrinsic rotation studies. A peaked co-current edge toroidal rotation is observed for the main ion species near the outboard midplane separatrix with values up to 140 km/s for low collisionality QH modes. In lower power (PNBI = 0.8MW) H-modes the edge rotation is still present but reduced to 50km/s. D+ and C6+ toroidal rotation differences are presented for a variety of scenarios covering a significant range of edge collisionality and Ti. Observations are compared with predictions from several models including collisionless ion orbit loss calculations and more complete modeling using the XGC0 code, which also predicts 140km/s edge rotation for low collisionality QH mode cases. Work supported by the U.S. DOE under DE-AC02-09CH11466, No. DE-FC02-04ER54698, and DE-FC02-95ER54309.

Measurements of [C I] 9850 A Emission from Comet Hale-Bopp

NASA Technical Reports Server (NTRS)

Oliversen, R. J.; Doane, N.; Scherb, F.; Harris, W. M.; Morgenthaler, J. P.

2002-01-01

We present quantitative measurements of cometary [C I] 9850 A, emission obtained during observations of comet Hale-Bopp (C/1995 O1) in 1997 March and April. The observations were carried out using a high-resolution (lambda/Delta lambda approx. 40,000) Fabry-Perot/CCD spectrometer at the McMath-Pierce solar telescope on Kitt Peak. This forbidden line, the carbon analog of [O I] 6300 A, is emitted in the radiative decay of C(1D) atoms. In the absence of other sources and sinks, [C I] 9850 A emission may be used as a direct tracer of CO photodissociation in comets. However, in Hale-Bopp's large, dense coma, other processes, such as collisional excitation of ground-state C(3P), dissociative recombination of CO+, and collisional dissociation of CO and CO2 may produce significant amounts of C(1D). The long C(1D) radiative lifetime (approx. 4000 s) makes collisional de-excitation (quenching) the primary loss mechanism in the inner coma. Thus, a detailed, self-consistent global model of collisional and photochemical interactions is necessary to fully account for [C I] 9850 A emission in comet Hale-Bopp.

Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris

DOE PAGES

Zhou, Aifen; Hillesland, Kristina L.; He, Zhili; ...

2015-04-07

To investigate the genetic basis of microbial evolutionary adaptation to salt (NaCl) stress, populations of Desulfovibrio vulgaris Hildenborough (DvH), a sulfate-reducing bacterium important for the biogeochemical cycling of sulfur, carbon and nitrogen, and potentially the bioremediation of toxic heavy metals and radionuclides, were propagated under salt stress or non-stress conditions for 1200 generations. Whole-genome sequencing revealed 11 mutations in salt stress-evolved clone ES9-11 and 14 mutations in non-stress-evolved clone EC3-10. Whole-population sequencing data suggested the rapid selective sweep of the pre-existing polymorphisms under salt stress within the first 100 generations and the slow fixation of new mutations. Population genotyping datamore » demonstrated that the rapid selective sweep of pre-existing polymorphisms was common in salt stress-evolved populations. In contrast, the selection of pre-existing polymorphisms was largely random in EC populations. Consistently, at 100 generations, stress-evolved population ES9 showed improved salt tolerance, namely increased growth rate (2.0-fold), higher biomass yield (1.8-fold) and shorter lag phase (0.7-fold) under higher salinity conditions. The beneficial nature of several mutations was confirmed by site-directed mutagenesis. All four tested mutations contributed to the shortened lag phases under higher salinity condition. In particular, compared with the salt tolerance improvement in ES9-11, a mutation in a histidine kinase protein gene lytS contributed 27% of the growth rate increase and 23% of the biomass yield increase while a mutation in hypothetical gene DVU2472 contributed 24% of the biomass yield increase. In conclusion, our results suggested that a few beneficial mutations could lead to dramatic improvements in salt tolerance.« less

Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, Aifen; Hillesland, Kristina L.; He, Zhili

To investigate the genetic basis of microbial evolutionary adaptation to salt (NaCl) stress, populations of Desulfovibrio vulgaris Hildenborough (DvH), a sulfate-reducing bacterium important for the biogeochemical cycling of sulfur, carbon and nitrogen, and potentially the bioremediation of toxic heavy metals and radionuclides, were propagated under salt stress or non-stress conditions for 1200 generations. Whole-genome sequencing revealed 11 mutations in salt stress-evolved clone ES9-11 and 14 mutations in non-stress-evolved clone EC3-10. Whole-population sequencing data suggested the rapid selective sweep of the pre-existing polymorphisms under salt stress within the first 100 generations and the slow fixation of new mutations. Population genotyping datamore » demonstrated that the rapid selective sweep of pre-existing polymorphisms was common in salt stress-evolved populations. In contrast, the selection of pre-existing polymorphisms was largely random in EC populations. Consistently, at 100 generations, stress-evolved population ES9 showed improved salt tolerance, namely increased growth rate (2.0-fold), higher biomass yield (1.8-fold) and shorter lag phase (0.7-fold) under higher salinity conditions. The beneficial nature of several mutations was confirmed by site-directed mutagenesis. All four tested mutations contributed to the shortened lag phases under higher salinity condition. In particular, compared with the salt tolerance improvement in ES9-11, a mutation in a histidine kinase protein gene lytS contributed 27% of the growth rate increase and 23% of the biomass yield increase while a mutation in hypothetical gene DVU2472 contributed 24% of the biomass yield increase. In conclusion, our results suggested that a few beneficial mutations could lead to dramatic improvements in salt tolerance.« less

Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, Aifen; Hillesland, Kristina L.; He, Zhili

To investigate the genetic basis of microbial evolutionary adaptation to salt (NaCl) stress, populations of Desulfovibrio vulgaris Hildenborough (DvH), a sulfate-reducing bacterium important for the biogeochemical cycling of sulfur, carbon and nitrogen, and potentially the bioremediation of toxic heavy metals and radionuclides, were propagated under salt stress or non-stress conditions for 1200 generations. Whole-genome sequencing revealed 11 mutations in salt stress-evolved clone ES9-11 and 14 mutations in non-stress-evolved clone EC3-10. Whole-population sequencing data suggested the rapid selective sweep of the pre-existing polymorphisms under salt stress within the first 100 generations and the slow fixation of new mutations. Population genotyping datamore » demonstrated that the rapid selective sweep of pre-existing polymorphisms was common in salt stress-evolved populations. In contrast, the selection of pre-existing polymorphisms was largely random in EC populations. Consistently, at 100 generations, stress-evolved population ES9 showed improved salt tolerance, namely increased growth rate (2.0-fold), higher biomass yield (1.8-fold) and shorter lag phase (0.7-fold) under higher salinity conditions. The beneficial nature of several mutations was confirmed by site-directed mutagenesis. All four tested mutations contributed to the shortened lag phases under higher salinity condition. In particular, compared with the salt tolerance improvement in ES9-11, a mutation in a histidine kinase protein gene lytS contributed 27% of the growth rate increase and 23% of the biomass yield increase while a mutation in hypothetical gene DVU2472 contributed 24% of the biomass yield increase. Our results suggested that a few beneficial mutations could lead to dramatic improvements in salt tolerance.« less

Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.

PubMed

Zhou, Aifen; Hillesland, Kristina L; He, Zhili; Schackwitz, Wendy; Tu, Qichao; Zane, Grant M; Ma, Qiao; Qu, Yuanyuan; Stahl, David A; Wall, Judy D; Hazen, Terry C; Fields, Matthew W; Arkin, Adam P; Zhou, Jizhong

2015-11-01

To investigate the genetic basis of microbial evolutionary adaptation to salt (NaCl) stress, populations of Desulfovibrio vulgaris Hildenborough (DvH), a sulfate-reducing bacterium important for the biogeochemical cycling of sulfur, carbon and nitrogen, and potentially the bioremediation of toxic heavy metals and radionuclides, were propagated under salt stress or non-stress conditions for 1200 generations. Whole-genome sequencing revealed 11 mutations in salt stress-evolved clone ES9-11 and 14 mutations in non-stress-evolved clone EC3-10. Whole-population sequencing data suggested the rapid selective sweep of the pre-existing polymorphisms under salt stress within the first 100 generations and the slow fixation of new mutations. Population genotyping data demonstrated that the rapid selective sweep of pre-existing polymorphisms was common in salt stress-evolved populations. In contrast, the selection of pre-existing polymorphisms was largely random in EC populations. Consistently, at 100 generations, stress-evolved population ES9 showed improved salt tolerance, namely increased growth rate (2.0-fold), higher biomass yield (1.8-fold) and shorter lag phase (0.7-fold) under higher salinity conditions. The beneficial nature of several mutations was confirmed by site-directed mutagenesis. All four tested mutations contributed to the shortened lag phases under higher salinity condition. In particular, compared with the salt tolerance improvement in ES9-11, a mutation in a histidine kinase protein gene lytS contributed 27% of the growth rate increase and 23% of the biomass yield increase while a mutation in hypothetical gene DVU2472 contributed 24% of the biomass yield increase. Our results suggested that a few beneficial mutations could lead to dramatic improvements in salt tolerance.

Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris

PubMed Central

Zhou, Aifen; Hillesland, Kristina L; He, Zhili; Schackwitz, Wendy; Tu, Qichao; Zane, Grant M; Ma, Qiao; Qu, Yuanyuan; Stahl, David A; Wall, Judy D; Hazen, Terry C; Fields, Matthew W; Arkin, Adam P; Zhou, Jizhong

2015-01-01

To investigate the genetic basis of microbial evolutionary adaptation to salt (NaCl) stress, populations of Desulfovibrio vulgaris Hildenborough (DvH), a sulfate-reducing bacterium important for the biogeochemical cycling of sulfur, carbon and nitrogen, and potentially the bioremediation of toxic heavy metals and radionuclides, were propagated under salt stress or non-stress conditions for 1200 generations. Whole-genome sequencing revealed 11 mutations in salt stress-evolved clone ES9-11 and 14 mutations in non-stress-evolved clone EC3-10. Whole-population sequencing data suggested the rapid selective sweep of the pre-existing polymorphisms under salt stress within the first 100 generations and the slow fixation of new mutations. Population genotyping data demonstrated that the rapid selective sweep of pre-existing polymorphisms was common in salt stress-evolved populations. In contrast, the selection of pre-existing polymorphisms was largely random in EC populations. Consistently, at 100 generations, stress-evolved population ES9 showed improved salt tolerance, namely increased growth rate (2.0-fold), higher biomass yield (1.8-fold) and shorter lag phase (0.7-fold) under higher salinity conditions. The beneficial nature of several mutations was confirmed by site-directed mutagenesis. All four tested mutations contributed to the shortened lag phases under higher salinity condition. In particular, compared with the salt tolerance improvement in ES9-11, a mutation in a histidine kinase protein gene lytS contributed 27% of the growth rate increase and 23% of the biomass yield increase while a mutation in hypothetical gene DVU2472 contributed 24% of the biomass yield increase. Our results suggested that a few beneficial mutations could lead to dramatic improvements in salt tolerance. PMID:25848870

Granite emplacement at the termination of a major Variscan transcurrent shear zone: The late collisional Viseu batholith

NASA Astrophysics Data System (ADS)

Valle Aguado, B.; Azevedo, M. R.; Nolan, J.; Medina, J.; Costa, M. M.; Corfu, F.; Martínez Catalán, J. R.

2017-05-01

A major event of plutonic activity occurred all across the Central Iberian Zone of the Iberian Variscan Belt at the end of Late Paleozoic Variscan collisional tectonism. The present study focuses on the western sector of the Viseu late-post-tectonic batholith (central Portugal), a large composite intrusion comprising three main plutonic units: (a) small bodies of mafic to intermediate composition preferentially concentrated along the northern border, (b) a wide ring of coarse porphyritic biotite monzogranite (Cota-Viseu granite) and (c) a more evolved medium porphyritic, biotite-muscovite monzogranite occupying the central part of the intrusion (Alcafache granite). The compositional zonation pattern of the whole batholith and the complex mixing/mingling relationships between the voluminous Cota-Viseu porphyritic granite and the mafic/intermediate rocks suggest that these melts were withdrawn from a lower crustal source region undergoing partial melting, invasion by mantle-derived mafic magmas, mixing and fractional crystallization. New CA-ID-TIMS U-Pb zircon ages indicate that pluton assembly via multipulse injection of successive magma batches took place between 299.4 ± 0.4 Ma and 296.0 ± 0.6 Ma. A detailed anisotropy of magnetic susceptibility (AMS) survey suggests that pluton emplacement occurred at the extensional termination of a regional-scale, ENE-WSW trending, sinistral D3 shear zone - the Juzbado-Penalva Shear Zone (JPSZ). A dilational opening model involving the development of "en-échelon" tensional gashes at the extensional termination of the fault, followed by progressive opening and widening of north-south trending fractures, provided the space into which the successive magma batches arriving from below were emplaced. Vertical inflation was accommodated by depression of the pluton floor. The proposed model is consistent with the asymmetric wedge-shaped geometry of the intrusion (steep root zone on the northern side, discordant subvertical walls and a shallowing pluton floor towards the south).

Collisional stripping of planetary crusts

NASA Astrophysics Data System (ADS)

Carter, Philip J.; Leinhardt, Zoë M.; Elliott, Tim; Stewart, Sarah T.; Walter, Michael J.

2018-02-01

Geochemical studies of planetary accretion and evolution have invoked various degrees of collisional erosion to explain differences in bulk composition between planets and chondrites. Here we undertake a full, dynamical evaluation of 'crustal stripping' during accretion and its key geochemical consequences. Crusts are expected to contain a significant fraction of planetary budgets of incompatible elements, which include the major heat producing nuclides. We present smoothed particle hydrodynamics simulations of collisions between differentiated rocky planetesimals and planetary embryos. We find that the crust is preferentially lost relative to the mantle during impacts, and we have developed a scaling law based on these simulations that approximates the mass of crust that remains in the largest remnant. Using this scaling law and a recent set of N-body simulations of terrestrial planet formation, we have estimated the maximum effect of crustal stripping on incompatible element abundances during the accretion of planetary embryos. We find that on average approximately one third of the initial crust is stripped from embryos as they accrete, which leads to a reduction of ∼20% in the budgets of the heat producing elements if the stripped crust does not reaccrete. Erosion of crusts can lead to non-chondritic ratios of incompatible elements, but the magnitude of this effect depends sensitively on the details of the crust-forming melting process on the planetesimals. The Lu/Hf system is fractionated for a wide range of crustal formation scenarios. Using eucrites (the products of planetesimal silicate melting, thought to represent the crust of Vesta) as a guide to the Lu/Hf of planetesimal crust partially lost during accretion, we predict the Earth could evolve to a superchondritic 176Hf/177Hf (3-5 parts per ten thousand) at present day. Such values are in keeping with compositional estimates of the bulk Earth. Stripping of planetary crusts during accretion can lead to detectable changes in bulk composition of lithophile elements, but the fractionation is relatively subtle, and sensitive to the efficiency of reaccretion.

Continental collision with a sandwiched accreted terrane: Insights into Himalayan-Tibetan lithospheric mantle tectonics?

NASA Astrophysics Data System (ADS)

Kelly, Sean; Butler, Jared P.; Beaumont, Christopher

2016-12-01

Many collisional orogens contain exotic terranes that were accreted to either the subducting or overriding plate prior to terminal continent-continent collision. The ways in which the physical properties of these terranes influence collision remain poorly understood. We use 2D thermomechanical finite element models to examine the effects of prior 'soft' terrane accretion to a continental upper plate (retro-lithosphere) on the ensuing continent-continent collision. The experiments explore how the style of collision changes in response to variations in the density and viscosity of the accreted terrane lithospheric mantle, as well as the density of the pro-lithospheric mantle, which determines its propensity to subduct or compress the accreted terrane and retro-lithosphere. The models evolve self-consistently through several emergent phases: breakoff of subducted oceanic lithosphere; pro-continent subduction; shortening of the retro-lithosphere accreted terrane, sometimes accompanied by lithospheric delamination; and, terminal underthrusting of pro-lithospheric mantle beneath the accreted terrane crust or mantle. The modeled variations in the properties of the accreted terrane lithospheric mantle can be interpreted to reflect metasomatism during earlier oceanic subduction beneath the terrane. Strongly metasomatized (i.e., dense and weak) mantle is easily removed by delamination or entrainment by the subducting pro-lithosphere, and facilitates later flat-slab underthrusting. The models are a prototype representation of the Himalayan-Tibetan orogeny in which there is only one accreted terrane, representing the Lhasa terrane, but they nonetheless exhibit processes like those inferred for the more complex Himalayan-Tibetan system. Present-day underthrusting of the Tibetan Plateau crust by Indian mantle lithosphere requires that the Lhasa terrane lithospheric mantle has been removed. Some of the model results support previous conceptual interpretations that Tibetan lithospheric mantle was removed by convective coupling to the pro-lithosphere. They can also be interpreted to suggest that delamination beneath Tibet was facilitated by densification and weakening of the plateau lithosphere, perhaps owing to long-lived pre- to syn-collisional subduction-related metasomatism beneath the Asian margin.

Supermassive black hole formation by cold accretion shocks in the first galaxies

NASA Astrophysics Data System (ADS)

Inayoshi, Kohei; Omukai, Kazuyuki

2012-05-01

We propose a new scenario for supermassive star (SMS: >rsim 105 M⊙) formation in shocked regions of colliding cold accretion flows near the centres of the first galaxies. Recent numerical simulations indicate that assembly of a typical first galaxy with virial temperature Tvir≳104 K proceeds via cold and dense flows penetrating deep to the centre, where supersonic streams collide with each other to develop a hot (˜104 K) and dense (˜103 cm-3) shocked gas. The post-shock layer first cools by efficient Lyα emission and contracts isobarically until ≃8000 K. Whether the layer continues its isobaric contraction depends on the density at this moment: if the density is high enough to excite H2 rovibrational levels collisionally (>rsim 104 cm-3), enhanced H2 collisional dissociation suppresses the gas from cooling further. In this case, the layer fragments into massive (>rsim 105 M⊙) clouds, which collapse isothermally (˜8000 K) by Lyα cooling without subsequent fragmentation. As an outcome, SMSs are expected to form and eventually evolve into the seeds of supermassive black holes (SMBHs). By calculating the thermal evolution of the post-shock gas, we delimit the range of post-shock conditions for SMS formation, which can be expressed as T≳6000 K (nH/104 cm-3)-1 for ? and T>rsim 5000 -6000 K for nH≳104 cm-3, depending somewhat on the initial ionization degree. We found that metal enrichment does not affect the above condition for metallicity below ≃10-3 Z⊙ if metals are in the gas phase, while condensation of several per cent of metals into dust decreases this critical value of metallicity by an order of magnitude. Unlike the previously proposed scenario for SMS formation, which postulates extremely strong ultraviolet radiation to quench H2 cooling, our scenario here naturally explains SMBH seed formation in the assembly process of the first galaxies, even without such strong radiation.

Ar-Ar dating and petrogenesis of the Early Miocene Taşkapı-Mecitli (Erciş-Van) granitoid, Eastern Anatolia Collisional Zone, Turkey

NASA Astrophysics Data System (ADS)

Oyan, Vural

2018-06-01

The Early Miocene Taşkapı-Mecitli granitoid that is located in the northern section of the Eastern Anatolia Collision Zone has typical I-type, metaluminous and calk-alkaline characteristics. It also contains mafic microgranular / magmatic enclaves (MMEs). New Ar-Ar dating results show that the age of the Taşkapı-Mecitli granitoid is ∼23 Ma and it crystallised in the Early Miocene, in contrast to its previously known Cretaceous age. Identical crystallisation ages (∼23 Ma), similar mineral assemblages and geochemical compositions, and indistinguishable isotopic compositions of MMEs and host rocks imply that the MMEs are most consistent with a cumulate origin formed at earlier stages of the same magmatic system that produced the Taşkapı-Mecitli granitoid. MELTS modelling suggests that magma of the Taşkapı-Mecitli granitoid was the result of fractionation under a crustal pressure of 4 kbar, with a H2O content of 1.5%. EC-AFC model calculation reveals that the Taşkapı-Mecitli granitoid includes from 0.5% to 2% crustal assimilation rates. These rates indicate that crustal contamination can be negligible when compared to fractional crystallisation in the evolution of the magma beneath the Taşkapı-Mecitli granitoid. The partial melting model calculations and MORB-normalised trace element concentrations of the least evolved samples of the Taşkapı-Mecitli granitoid are consistent with those of mafic melts obtained from partial melting of interacting mantle- lower crust with a melting degree of 18%. The age (23 Ma) of the post- or syn-collisional Taşkapı-Mecitli granitoid suggests that the collision between Arabian and Eurasian plates could be before/around ∼23 Ma (Late Oligocene to Early Miocene).

Structure and Evolution of Kuiper Belt Objects: The Case for Compositional Classes

NASA Astrophysics Data System (ADS)

McKinnon, William B.; Prialnik, D.; Stern, S. A.

2007-10-01

Kuiper belt objects (KBOs) accreted from a mélange of ices, carbonaceous matter, and rock of mixed interstellar and solar nebular provenance. The transneptunian region, where this accretion took place, was likely more radially compact than today. This and the influence of gas drag during the solar nebula epoch argue for more rapid KBO accretion than usually considered. Early evolution of KBOs was largely the result of radiogenic heating, with both short-term and long-term contributions being potentially important. Depending on rock content and porous conductivity, KBO interiors may have reached relatively high temperatures. Models suggest that KBOs likely lost very volatile ices during early evolution, whereas less volatile ices should be retained in cold, less altered subsurface layers; initially amorphous ice may have crystallized in the interior as well, releasing trapped volatiles. Generally, KBOs should be stratified in terms of composition and porosity, albeit subject to impact disruption and collisional stripping. KBOs are thus unlikely to be "the most pristine objects in the Solar System.” Large (dwarf planet) KBOs may be fully differentiated. KBO surface color and compositional classes are usually discussed in terms of "nature vs. nurture,” i.e., a generic primordial composition vs. surface processing, but the true nature of KBOs also depends on how they have evolved. The broad range of albedos now found in the Kuiper belt, deep water-ice absorptions on some objects, evidence for differentiation of Pluto and 2003 EL61, and a range of densities incompatible with a single, primordial composition and variable porosity strongly imply significant, intrinsic compositional differences among KBOs. The interplay of formation zone (accretion rate), body size, and dynamical (collisional) history may yield KBO compositional classes (and their spectral correlates) that recall the different classes of asteroids in the inner Solar System, but whose members are broadly distributed among the KBO dynamical subpopulations.

Assessing Multivariate Constraints to Evolution across Ten Long-Term Avian Studies

PubMed Central

Teplitsky, Celine; Tarka, Maja; Møller, Anders P.; Nakagawa, Shinichi; Balbontín, Javier; Burke, Terry A.; Doutrelant, Claire; Gregoire, Arnaud; Hansson, Bengt; Hasselquist, Dennis; Gustafsson, Lars; de Lope, Florentino; Marzal, Alfonso; Mills, James A.; Wheelwright, Nathaniel T.; Yarrall, John W.; Charmantier, Anne

2014-01-01

Background In a rapidly changing world, it is of fundamental importance to understand processes constraining or facilitating adaptation through microevolution. As different traits of an organism covary, genetic correlations are expected to affect evolutionary trajectories. However, only limited empirical data are available. Methodology/Principal Findings We investigate the extent to which multivariate constraints affect the rate of adaptation, focusing on four morphological traits often shown to harbour large amounts of genetic variance and considered to be subject to limited evolutionary constraints. Our data set includes unique long-term data for seven bird species and a total of 10 populations. We estimate population-specific matrices of genetic correlations and multivariate selection coefficients to predict evolutionary responses to selection. Using Bayesian methods that facilitate the propagation of errors in estimates, we compare (1) the rate of adaptation based on predicted response to selection when including genetic correlations with predictions from models where these genetic correlations were set to zero and (2) the multivariate evolvability in the direction of current selection to the average evolvability in random directions of the phenotypic space. We show that genetic correlations on average decrease the predicted rate of adaptation by 28%. Multivariate evolvability in the direction of current selection was systematically lower than average evolvability in random directions of space. These significant reductions in the rate of adaptation and reduced evolvability were due to a general nonalignment of selection and genetic variance, notably orthogonality of directional selection with the size axis along which most (60%) of the genetic variance is found. Conclusions These results suggest that genetic correlations can impose significant constraints on the evolution of avian morphology in wild populations. This could have important impacts on evolutionary dynamics and hence population persistence in the face of rapid environmental change. PMID:24608111

Modern gyrokinetic formulation of collisional and turbulent transport in toroidally rotating plasmas

NASA Astrophysics Data System (ADS)

Sugama, H.

2017-12-01

Collisional and turbulent transport processes in toroidal plasmas with large toroidal flows on the order of the ion thermal velocity are formulated based on the modern gyrokinetic theory. Governing equations for background and turbulent electromagnetic fields and gyrocenter distribution functions are derived from the Lagrangian variational principle with effects of collisions and external sources taken into account. Noether's theorem modified for collisional systems and the collision operator given in terms of Poisson brackets are applied to derivation of the particle, energy, and toroidal momentum balance equations in the conservative forms which are desirable properties for long-time global transport simulation. The resultant balance equations are shown to include the classical, neoclassical, and turbulent transport fluxes which agree with those obtained from the conventional recursive formulations.

Collisional excitation of HC3N by para- and ortho-H2

NASA Astrophysics Data System (ADS)

Faure, Alexandre; Lique, François; Wiesenfeld, Laurent

2016-08-01

New calculations for rotational excitation of cyanoacetylene by collisions with hydrogen molecules are performed to include the lowest 38 rotational levels of HC3N and kinetic temperatures to 300 K. Calculations are based on the interaction potential of Wernli et al. whose accuracy is checked against spectroscopic measurements of the HC3N-H2 complex. The quantum coupled-channel approach is employed and complemented by quasi-classical trajectory calculations. Rate coefficients for ortho-H2 are provided for the first time. Hyperfine resolved rate coefficients are also deduced. Collisional propensity rules are discussed and comparisons between quantum and classical rate coefficients are presented. This collisional data should prove useful in interpreting HC3N observations in the cold and warm ISM, as well as in protoplanetary discs.

Collisional dynamics of perturbed particle disks in the solar system

NASA Technical Reports Server (NTRS)

Roberts, W. W.; Stewart, G. R.

1987-01-01

Investigations of the collisional evolution of particulate disks subject to the gravitational perturbation of a more massive particle orbiting within the disk are underway. Both numerical N-body simulations using a novel collision algorithm and analytical kinetic theory are being employed to extend our understanding of perturbed disks in planetary rings and during the formation of the solar system. Particular problems proposed for investigation are: (1) The development and testing of general criteria for a small moonlet to clear a gap and produce observable morphological features in planetary rings; (2) The development of detailed models of collisional damping of the wavy edges observed on the Encke division of Saturn's A ring; and (3) The determination of the extent of runaway growth of the few largest planetesimals during the early stages of planetary accretion.

Kinetic water-bag model of global collisional drift waves and ion temperature gradient instabilities in cylindrical geometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gravier, E.; Plaut, E.

2013-04-15

Collisional drift waves and ion temperature gradient (ITG) instabilities are studied using a linear water-bag kinetic model [P. Morel et al., Phys. Plasmas 14, 112109 (2007)]. An efficient spectral method, already validated in the case of drift waves instabilities [E. Gravier et al., Eur. Phys. J. D 67, 7 (2013)], allows a fast solving of the global linear problem in cylindrical geometry. The comparison between the linear ITG instability properties thus computed and the ones given by the COLUMBIA experiment [R. G. Greaves et al., Plasma Phys. Controlled Fusion 34, 1253 (1992)] shows a qualitative agreement. Moreover, the transition betweenmore » collisional drift waves and ITG instabilities is studied theoretically as a function of the ion temperature profile.« less

The Fitness Consequences of Aneuploidy Are Driven by Condition-Dependent Gene Effects

PubMed Central

Sunshine, Anna B.; Payen, Celia; Ong, Giang T.; Liachko, Ivan; Tan, Kean Ming; Dunham, Maitreya J.

2015-01-01

Aneuploidy is a hallmark of tumor cells, and yet the precise relationship between aneuploidy and a cell’s proliferative ability, or cellular fitness, has remained elusive. In this study, we have combined a detailed analysis of aneuploid clones isolated from laboratory-evolved populations of Saccharomyces cerevisiae with a systematic, genome-wide screen for the fitness effects of telomeric amplifications to address the relationship between aneuploidy and cellular fitness. We found that aneuploid clones rise to high population frequencies in nutrient-limited evolution experiments and show increased fitness relative to wild type. Direct competition experiments confirmed that three out of four aneuploid events isolated from evolved populations were themselves sufficient to improve fitness. To expand the scope beyond this small number of exemplars, we created a genome-wide collection of >1,800 diploid yeast strains, each containing a different telomeric amplicon (Tamp), ranging in size from 0.4 to 1,000 kb. Using pooled competition experiments in nutrient-limited chemostats followed by high-throughput sequencing of strain-identifying barcodes, we determined the fitness effects of these >1,800 Tamps under three different conditions. Our data revealed that the fitness landscape explored by telomeric amplifications is much broader than that explored by single-gene amplifications. As also observed in the evolved clones, we found the fitness effects of most Tamps to be condition specific, with a minority showing common effects in all three conditions. By integrating our data with previous work that examined the fitness effects of single-gene amplifications genome-wide, we found that a small number of genes within each Tamp are centrally responsible for each Tamp’s fitness effects. Our genome-wide Tamp screen confirmed that telomeric amplifications identified in laboratory-evolved populations generally increased fitness. Our results show that Tamps are mutations that produce large, typically condition-dependent changes in fitness that are important drivers of increased fitness in asexually evolving populations. PMID:26011532

Electronic quenching of OH A 2Σ + radicals in collisions with molecular hydrogen

NASA Astrophysics Data System (ADS)

Pollack, Ilana B.; Lei, Yuxiu; Stephenson, Thomas A.; Lester, Marsha I.

2006-04-01

Collisional quenching of electronically excited OH A 2Σ + radicals by molecular hydrogen introduces nonradiative pathways that rapidly remove OH population from the excited state, and result in a significantly decreased fluorescence lifetime. One of these pathways is shown to lead to ground state OH X 2Π products with ˜1 eV of internal excitation in both highly excited rotational levels of v = 1 and the lowest rotational levels of v = 2. This highly nonstatistical OH X 2Π product distribution reflects the passage of the HO-H 2 system through the conical intersection regions that couple the ground and excited state surfaces.

(Fe II) emission from high-density regions in the Orion Nebula

NASA Technical Reports Server (NTRS)

Bautista, Manuel A.; Pradhan, Anil K.; Osterbrock, Donald E.

1994-01-01

Direct spectroscopic evidence of high-density regions in the Orion Nebula, N(sub e) approximately equals 10(exp 5)-10(exp 7)/cu cm, is obtained from the forbidden optical and near-IR (Fe II) emission lines, using new atomic data. Calculations for level populations and line ratios are carried out using 16, 35, and 142 level collisional-radiative models for Fe II. Estimates of Fe(+) abundances derived from the near-infrared and the optical line intensities are consistent with a high density of 10(exp 6)/cu cm in the (Fe II) emitting regions. Important consequences for abundance determinations in the nebula are pointed out.

Boundary effects in a quasi-two-dimensional driven granular fluid.

PubMed

Smith, N D; Smith, M I

2017-12-01

The effect of a confining boundary on the spatial variations in granular temperature of a driven quasi-two-dimensional layer of particles is investigated experimentally. The radial drop in the relative granular temperature ΔT/T exhibits a maximum at intermediate particle numbers which coincides with a crossover from kinetic to collisional transport of energy. It is also found that at low particle numbers, the distributions of radial velocities are increasingly asymmetric as one approaches the boundary. The radial and tangential granular temperatures split, and in the tails of the radial velocity distribution there is a higher population of fast moving particles traveling away rather than towards the boundary.

Laser-Induced-Emission Spectroscopy In Hg/Ar Discharge

NASA Technical Reports Server (NTRS)

Maleki, Lutfollah; Blasenheim, Barry J.; Janik, Gary R.

1992-01-01

Laser-induced-emission (LIE) spectroscopy used to probe low-pressure mercury/argon discharge to determine influence of mercury atoms in metastable 6(Sup3)P(Sub2) state on emission of light from discharge. LIE used to study all excitation processes affected by metastable population, including possible effects on excitation of atoms, ions, and buffer gas. Technique applied to emissions of other plasmas. Provides data used to make more-accurate models of such emissions, exploited by lighting and laser industries and by laboratories studying discharges. Also useful in making quantitative measurements of relative rates and cross sections of direct and two-step collisional processes involving metastable level.

Measurements of population densities of metastable and resonant levels of argon using laser induced fluorescence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nikolić, M.; Newton, J.; Sukenik, C. I.

2015-01-14

We present a new approach to measure population densities of Ar I metastable and resonant excited states in low temperature Ar plasmas at pressures higher than 1 Torr. This approach combines the time resolved laser induced fluorescence technique with the kinetic model of Ar. The kinetic model of Ar is based on calculating the population rates of metastable and resonant levels by including contributions from the processes that affect population densities of Ar I excited states. In particular, we included collisional quenching processes between atoms in the ground state and excited states, since we are investigating plasma at higher pressures. Wemore » also determined time resolved population densities of Ar I 2 p excited states by employing optical emission spectroscopy technique. Time resolved Ar I excited state populations are presented for the case of the post-discharge of the supersonic flowing microwave discharge at pressures of 1.7 and 2.3 Torr. The experimental set-up consists of a pulsed tunable dye laser operating in the near infrared region and a cylindrical resonance cavity operating in TE{sub 111} mode at 2.45 GHz. Results show that time resolved population densities of Ar I metastable and resonant states oscillate with twice the frequency of the discharge.« less

Evolution of Ecological Diversity in Biofilms of Pseudomonas aeruginosa by Altered Cyclic Diguanylate Signaling

PubMed Central

Flynn, Kenneth M.; Dowell, Gabrielle; Johnson, Thomas M.; Koestler, Benjamin J.; Waters, Christopher M.

2016-01-01

ABSTRACT The ecological and evolutionary forces that promote and maintain diversity in biofilms are not well understood. To quantify these forces, three Pseudomonas aeruginosa populations were experimentally evolved from strain PA14 in a daily cycle of attachment, assembly, and dispersal for 600 generations. Each biofilm population evolved diverse colony morphologies and mutator genotypes defective in DNA mismatch repair. This diversity enhanced population fitness and biofilm output, owing partly to rare, early colonizing mutants that enhanced attachment of others. Evolved mutants exhibited various levels of the intracellular signal cyclic-di-GMP, which associated with their timing of adherence. Manipulating cyclic-di-GMP levels within individual mutants revealed a network of interactions in the population that depended on various attachment strategies related to this signal. Diversification in biofilms may therefore arise and be reinforced by initial colonists that enable community assembly. IMPORTANCE How biofilm diversity assembles, evolves, and contributes to community function is largely unknown. This presents a major challenge for understanding evolution during chronic infections and during the growth of all surface-associated microbes. We used experimental evolution to probe these dynamics and found that diversity, partly related to altered cyclic-di-GMP levels, arose and persisted due to the emergence of ecological interdependencies related to attachment patterns. Clonal isolates failed to capture population attributes, which points to the need to account for diversity in infections. More broadly, this study offers an experimental framework for linking phenotypic variation to distinct ecological strategies in biofilms and for studying eco-evolutionary interactions. PMID:27021563

Quantifying selection in evolving populations using time-resolved genetic data

NASA Astrophysics Data System (ADS)

Illingworth, Christopher J. R.; Mustonen, Ville

2013-01-01

Methods which uncover the molecular basis of the adaptive evolution of a population address some important biological questions. For example, the problem of identifying genetic variants which underlie drug resistance, a question of importance for the treatment of pathogens, and of cancer, can be understood as a matter of inferring selection. One difficulty in the inference of variants under positive selection is the potential complexity of the underlying evolutionary dynamics, which may involve an interplay between several contributing processes, including mutation, recombination and genetic drift. A source of progress may be found in modern sequencing technologies, which confer an increasing ability to gather information about evolving populations, granting a window into these complex processes. One particularly interesting development is the ability to follow evolution as it happens, by whole-genome sequencing of an evolving population at multiple time points. We here discuss how to use time-resolved sequence data to draw inferences about the evolutionary dynamics of a population under study. We begin by reviewing our earlier analysis of a yeast selection experiment, in which we used a deterministic evolutionary framework to identify alleles under selection for heat tolerance, and to quantify the selection acting upon them. Considering further the use of advanced intercross lines to measure selection, we here extend this framework to cover scenarios of simultaneous recombination and selection, and of two driver alleles with multiple linked neutral, or passenger, alleles, where the driver pair evolves under an epistatic fitness landscape. We conclude by discussing the limitations of the approach presented and outlining future challenges for such methodologies.

Mutation Bias Favors Protein Folding Stability in the Evolution of Small Populations

PubMed Central

Porto, Markus; Bastolla, Ugo

2010-01-01

Mutation bias in prokaryotes varies from extreme adenine and thymine (AT) in obligatory endosymbiotic or parasitic bacteria to extreme guanine and cytosine (GC), for instance in actinobacteria. GC mutation bias deeply influences the folding stability of proteins, making proteins on the average less hydrophobic and therefore less stable with respect to unfolding but also less susceptible to misfolding and aggregation. We study a model where proteins evolve subject to selection for folding stability under given mutation bias, population size, and neutrality. We find a non-neutral regime where, for any given population size, there is an optimal mutation bias that maximizes fitness. Interestingly, this optimal GC usage is small for small populations, large for intermediate populations and around 50% for large populations. This result is robust with respect to the definition of the fitness function and to the protein structures studied. Our model suggests that small populations evolving with small GC usage eventually accumulate a significant selective advantage over populations evolving without this bias. This provides a possible explanation to the observation that most species adopting obligatory intracellular lifestyles with a consequent reduction of effective population size shifted their mutation spectrum towards AT. The model also predicts that large GC usage is optimal for intermediate population size. To test these predictions we estimated the effective population sizes of bacterial species using the optimal codon usage coefficients computed by dos Reis et al. and the synonymous to non-synonymous substitution ratio computed by Daubin and Moran. We found that the population sizes estimated in these ways are significantly smaller for species with small and large GC usage compared to species with no bias, which supports our prediction. PMID:20463869

The tectonic evolution of the Irtysh tectonic belt: New zircon U-Pb ages of arc-related and collisional granitoids in the Kalaxiangar tectonic belt, NW China

NASA Astrophysics Data System (ADS)

Hong, Tao; Klemd, Reiner; Gao, Jun; Xiang, Peng; Xu, Xing-Wang; You, Jun; Wang, Xin-Shui; Wu, Chu; Li, Hao; Ke, Qiang

2017-02-01

Precise geochronological constraints of the Irtysh tectonic belt situated between the Saur Island Arc and the Altay Terrane are crucial to a better understanding of the tectonic evolution of the Central Asian Orogenic Belt (CAOB). Recently, we discovered repeatedly deformed arc-related and collisional granitoids in the Kalaxiangar tectonic belt (KTB), which is located in the eastern part of the Irtysh tectonic belt. In this study, we report new whole-rock geochemical, zircon U-Pb and Hf isotopic data of the arc-related and collisional granitoids. Our data reveal that 1) arc-related granodioritic porphyries formed at ca. 382-374 Ma. Recrystallized zircon grains from a (ultra-)mylonitic granodiorite of the Laoshankou zone in the southern KTB display a U-Pb age of ca. 360 Ma; 2) syn-collisional granodioritic porphyries, which distribute along faults and parallel to the cleavage, were emplaced at ca. 367-356 Ma, with εHf(t) values varying from + 7.8 to + 14.2 and Hf model ages from 873 to 459 Ma; 3) a post-collisional A-type granodioritic porphyry, which crosscuts the NW-NNW trending schistosity of the metasedimentary country rocks at a low angle, has an age of ca. 324-320 Ma, while the εHf(t) values range from + 7.6 to + 14.4 with Hf model ages from 850 to 416 Ma; 4) post-collisional strike-slip A-type granite dykes, exposed along strike-slip faults, gave ages between 287 and 279 Ma, whereas the εHf(t) values range from + 4.9 to + 12.7 and the Hf model ages from 995 to 500 Ma; and 5) A-type biotite granite dykes, which intruded along conjugate tension joints, have ages of 274-271 Ma, and εHf(t) values from + 1.5 to + 13.2 with Hf model ages from 1196 to 454 Ma. Consequently, we propose that the collision between the Saur Island Arc and the Altay Terrane occurred in the Early Carboniferous (ca. 367-356 Ma) and the subsequent post-collisional tectonic process continued to the Late Carboniferous (ca. 324-320 Ma). It is further suggested that the Irtysh tectonic belt underwent large-scale strike-slip deformation during the mid-Permian between 287 and 279 Ma. The termination of the Irtysh tectonic belt orogeny is thought to have also occurred during the mid-Permian between 274 and 271 Ma.

A Hybrid Model for Multiscale Laser Plasma Simulations with Detailed Collisional Physics

DTIC Science & Technology

2017-06-23

the effects of inelastic collisions on the Multi-Fluid description of plasmas. 15. SUBJECT TERMS Electric propulsion; plasma; collisional...modeling as well as the effects of inelastic collisions on the Multi-Fluid description of plasmas. This work has been recognized in two workshop...encountered during simulation was to define when breakdown occurred during the simulation and correlating the results to the experimentally determined

Signatures of massive collisions in debris discs. A self-consistent numerical model

NASA Astrophysics Data System (ADS)

Kral, Q.; Thébault, P.; Augereau, J.-C.; Boccaletti, A.; Charnoz, S.

2015-01-01

Context. Violent stochastic collisional events have been invoked as a possible explanation for some debris discs displaying pronounced azimuthal asymmetries or having a luminosity excess exceeding that expected for systems at collisional steady-state. So far, no thorough modelling of the consequences of such stochastic events has been carried out, mainly because of the extreme numerical challenge of coupling the dynamical and collisional evolution of the released dust. Aims: We perform the first fully self-consistent modelling of the aftermath of massive breakups in debris discs. We follow the collisional and dynamical evolution of dust released after the breakup of a Ceres-sized body at 6 AU from its central star. We investigate the duration, magnitude, and spatial structure of the signature left by such a violent event, as well as its observational detectability. Methods: We use the recently developed LIDT-DD code, which handles the coupled collisional and dynamical evolution of debris discs. The main focus is placed on the complex interplay between destructive collisions, Keplerian dynamics, and radiation pressure forces. We use the GRaTer package to estimate the system's luminosity at different wavelengths. Results: The breakup of a Ceres-sized body at 6 AU creates an asymmetric dust disc that is homogenized by the coupled action of collisions and dynamics on a timescale of a few 105 years. After a transient period where it is very steep, the particle size distribution in the system relaxes to a collisional steady-state law after ~104 years. The luminosity excess in the breakup's aftermath should be detectable by mid-IR photometry, from a 30 pc distance, over a period of ~106 years that exceeds the duration of the asymmetric phase of the disc (a few 105 years). As for the asymmetric structures, we derive synthetic images for the VLT/SPHERE and JWST/MIRI instruments, showing that they should be clearly visible and resolved from a 10 pc distance. Images at 1.6 μm (marginally), 11.4, and 15.5 μm show the inner disc structures, while 23 μm images display the outer disc asymmetries.

Non-relativistic Free–Free Emission due to the n -distribution of Electrons—Radiative Cooling and Thermally Averaged and Total Gaunt Factors

DOE Office of Scientific and Technical Information (OSTI.GOV)

De Avillez, Miguel A.; Breitschwerdt, Dieter, E-mail: mavillez@galaxy.lca.uevora.pt

Tracking the thermal evolution of plasmas, characterized by an n -distribution, using numerical simulations, requires the determination of the emission spectra and of the radiative losses due to free–free emission from the corresponding temperature-averaged and total Gaunt factors. Detailed calculations of the latter are presented and associated with n -distributed electrons with the parameter n ranging from 1 (corresponding to the Maxwell–Boltzmann distribution) to 100. The temperature-averaged and total Gaunt factors with decreasing n tend toward those obtained with the Maxwell–Boltzmann distribution. Radiative losses due to free–free emission in a plasma evolving under collisional ionization equilibrium conditions and composed bymore » H, He, C, N, O, Ne, Mg, Si, S, and Fe ions, are presented. These losses decrease with a decrease in the parameter n , reaching a minimum when n  = 1, and thus converge with the loss of thermal plasma. Tables of the thermal-averaged and total Gaunt factors calculated for n -distributions, and a wide range of electron and photon energies, are presented.« less

Jupiter’s decisive role in the inner Solar System’s early evolution

PubMed Central

Batygin, Konstantin; Laughlin, Greg

2015-01-01

The statistics of extrasolar planetary systems indicate that the default mode of planet formation generates planets with orbital periods shorter than 100 days and masses substantially exceeding that of the Earth. When viewed in this context, the Solar System is unusual. Here, we present simulations which show that a popular formation scenario for Jupiter and Saturn, in which Jupiter migrates inward from a > 5 astronomical units (AU) to a ≈ 1.5 AU before reversing direction, can explain the low overall mass of the Solar System’s terrestrial planets, as well as the absence of planets with a < 0.4 AU. Jupiter’s inward migration entrained s ≳ 10−100 km planetesimals into low-order mean motion resonances, shepherding and exciting their orbits. The resulting collisional cascade generated a planetesimal disk that, evolving under gas drag, would have driven any preexisting short-period planets into the Sun. In this scenario, the Solar System’s terrestrial planets formed from gas-starved mass-depleted debris that remained after the primary period of dynamical evolution. PMID:25831540

Gas-drag-assisted capture of Himalia's family

NASA Astrophysics Data System (ADS)

Ćuk, Matija; Burns, Joseph A.

2004-02-01

To elucidate the capture of Jupiter's outer moons, we reverse-evolve satellites from their present orbits to their original heliocentric paths in the presence of Jupiter's primordial circumplanetary disk (Lubow et al., 1999, Astrophys. J. 526, 1001-1012; Canup and Ward, 2003, Astron. J. 124, 3404-3423). Our orbital histories use a symplectic integrator that allows dissipation. We assume that the present satellites Himalia, Elara, Lysithea, Leda, and S/2000 J11 are collisional fragments of a single parent. Our simulations show that this "prograde-cluster progenitor" (PCP) could be derived from objects with heliocentric orbits like those of the Hilda asteroid group. We show analytically that this capture is energetically possible. We also compare the spectroscopic characteristics of the prograde cluster members (Grav et al., 2003, Icarus, submitted for publication) with those of the Hildas, and conclude that the surface color of the prograde-cluster progenitor is consistent with an origin within the Hilda group. Accordingly, gas drag in the primordial jovian nebula is found to offer a plausible explanation for the origin of the prograde cluster. A similar capture mechanism is proposed for Saturn's Phoebe.

Predictable evolution toward flightlessness in volant island birds

PubMed Central

Wright, Natalie A.; Steadman, David W.; Witt, Christopher C.

2016-01-01

Birds are prolific colonists of islands, where they readily evolve distinct forms. Identifying predictable, directional patterns of evolutionary change in island birds, however, has proved challenging. The “island rule” predicts that island species evolve toward intermediate sizes, but its general applicability to birds is questionable. However, convergent evolution has clearly occurred in the island bird lineages that have undergone transitions to secondary flightlessness, a process involving drastic reduction of the flight muscles and enlargement of the hindlimbs. Here, we investigated whether volant island bird populations tend to change shape in a way that converges subtly on the flightless form. We found that island bird species have evolved smaller flight muscles than their continental relatives. Furthermore, in 366 populations of Caribbean and Pacific birds, smaller flight muscles and longer legs evolved in response to increasing insularity and, strikingly, the scarcity of avian and mammalian predators. On smaller islands with fewer predators, birds exhibited shifts in investment from forelimbs to hindlimbs that were qualitatively similar to anatomical rearrangements observed in flightless birds. These findings suggest that island bird populations tend to evolve on a trajectory toward flightlessness, even if most remain volant. This pattern was consistent across nine families and four orders that vary in lifestyle, foraging behavior, flight style, and body size. These predictable shifts in avian morphology may reduce the physical capacity for escape via flight and diminish the potential for small-island taxa to diversify via dispersal. PMID:27071105

Investigation of glyphosate resistance levels and target-site based resistance (TSR) mechanisms in Conyza canadensis (L.) from apple orchards around areas of Bohai seas and Loess Plateau in China.

PubMed

Mei, Yu; Xu, Yufang; Wang, Shipeng; Qiu, Lihong; Zheng, Mingqi

2018-04-01

The resistance levels to glyphosate and target-site based resistance mechanisms in susceptible (S) and resistant (R) Conyza canadensis (L.) populations, which were collected from apple orchards around areas of Bohai seas and Loess Plateau in China, were investigated. Among forty C. canadensis populations, eighteen populations (45%) were still susceptible; fourteen populations (35%) evolved low resistance levels resistance to glyphosate with resistance index (RI) of 2.02 to 3.90. In contrast, eight populations (20%) evolved medium resistance levels with RI of 4.35 to 8.38. The shikimic acid concentrations in R populations were highly negative relative with the glyphosate resistance levels in C. canadensis, the Pearson correlation coefficient was -0.82 treated by glyphosate at 1.8mg/L. Three 5-enoylpyruvylshikimate 3'-phosphate synthase genes (EPSPS1, EPSPS2 and EPSPS3) were cloned in all S and glyphosate-resistant C. canadensis populations. No amino acid substitution was identified at site of 102 and 106 in three EPSPS genes, which were reported to confer glyphosate resistance in other weed species. The relative expression level of EPSPS mRNA in R populations (SD07, LN05, SHX06 and SD09) was 4.5 to 13.2 times higher than in S biotype. The Pearson correlation coefficient between EPSPS expression levels and RI was 0.79, which indicated the over expression of EPSPS mRNA may cause these R populations evolve higher resistance level to glyphosate. Copyright © 2018 Elsevier Inc. All rights reserved.

Birth, life, and demise of the Andean-syn-collisional Gissar arc: Late Paleozoic tectono-magmatic-metamorphic evolution of the southwestern Tian Shan, Tajikistan

NASA Astrophysics Data System (ADS)

Worthington, James R.; Kapp, Paul; Minaev, Vladislav; Chapman, James B.; Mazdab, Frank K.; Ducea, Mihai N.; Oimahmadov, Ilhomjon; Gadoev, Mustafo

2017-10-01

The amalgamation of the Central Asian Orogenic Belt in the southwestern Tian Shan in Tajikistan is represented by tectono-magmatic-metamorphic processes that accompanied late Paleozoic ocean closure and collision between the Karakum-Tarim and Kazakh-Kyrgyz terranes. Integrated U-Pb geochronology, thermobarometry, pseudosection modeling, and Hf geochemistry constrain the timing and petro-tectonic nature of these processes. The Gissar batholith and the Garm massif represent an eastward, along-strike increase in paleodepth from upper-batholith ( 21-7 km) to arc-root ( 36-19 km) levels of the Andean-syn-collisional Gissar arc, which developed from 323-288 Ma in two stages: (i) Andean, I-type granitoid magmatism from 323-306 Ma due to northward subduction of the Gissar back-arc ocean basin under the Gissar microcontinent, which was immediately followed by (ii) syn-collisional, I-S-type granitoid magmatism in the Gissar batholith and the Garm massif from 304-288 Ma due to northward subduction/underthrusting of Karakum marginal-continental crust under the Gissar microcontinent. A rapid isotopic pull-up from 288-286 Ma signals the onset of juvenile, alkaline-syenitic, post-collisional magmatism by 280 Ma, which was driven by delamination of the Gissar arclogite root and consequent convective asthenospheric upwelling. Whereas M-HT/LP prograde metamorphism in the Garm massif (650-750°C/6-7 kbar) from 310-288 Ma was associated with subduction-magma inundation and crustal thickening, HT/LP heating and decompression to peak-metamorphic temperatures ( 800-820°C/6-4 kbar) at 288 ± 6 Ma was driven by the transmission of a post-collisional, mantle-derived heat wave through the Garm-massif crust.

Targeted Approach to Identify Genetic Loci Associated with Evolved Dioxin Tolerance in Atlantic Killifish (Fundulus heteroclitus)

EPA Science Inventory

Extreme tolerance to highly toxic dioxin-like contaminants (DLCs) has evolved independently and contemporaneously in (at least) four populations of Atlantic killifish (Fundulus heteroclitus). Surprisingly, the magnitude and phenotype of DLC tolerance is similar among these killi...

A single molecule perspective on the functional diversity of in vitro evolved β-glucuronidase.

PubMed

Liebherr, Raphaela B; Renner, Max; Gorris, Hans H

2014-04-23

The mechanisms that drive the evolution of new enzyme activity have been investigated by comparing the kinetics of wild-type and in vitro evolved β-glucuronidase (GUS) at the single molecule level. Several hundred single GUS molecules were separated in large arrays of 62,500 ultrasmall reaction chambers etched into the surface of a fused silica slide to observe their individual substrate turnover rates in parallel by fluorescence microscopy. Individual GUS molecules feature long-lived but divergent activity states, and their mean activity is consistent with classic Michaelis-Menten kinetics. The large number of single molecule substrate turnover rates is representative of the activity distribution within an entire enzyme population. Partially evolved GUS displays a much broader activity distribution among individual enzyme molecules than wild-type GUS. The broader activity distribution indicates a functional division of work between individual molecules in a population of partially evolved enzymes that-as so-called generalists-are characterized by their promiscuous activity with many different substrates.

Morphological change in machines accelerates the evolution of robust behavior

PubMed Central

Bongard, Josh

2011-01-01

Most animals exhibit significant neurological and morphological change throughout their lifetime. No robots to date, however, grow new morphological structure while behaving. This is due to technological limitations but also because it is unclear that morphological change provides a benefit to the acquisition of robust behavior in machines. Here I show that in evolving populations of simulated robots, if robots grow from anguilliform into legged robots during their lifetime in the early stages of evolution, and the anguilliform body plan is gradually lost during later stages of evolution, gaits are evolved for the final, legged form of the robot more rapidly—and the evolved gaits are more robust—compared to evolving populations of legged robots that do not transition through the anguilliform body plan. This suggests that morphological change, as well as the evolution of development, are two important processes that improve the automatic generation of robust behaviors for machines. It also provides an experimental platform for investigating the relationship between the evolution of development and robust behavior in biological organisms. PMID:21220304

Non-thermal hydrogen atoms in the terrestrial upper thermosphere.

PubMed

Qin, Jianqi; Waldrop, Lara

2016-12-06

Model predictions of the distribution and dynamical transport of hydrogen atoms in the terrestrial atmosphere have long-standing discrepancies with ultraviolet remote sensing measurements, indicating likely deficiencies in conventional theories regarding this crucial atmospheric constituent. Here we report the existence of non-thermal hydrogen atoms that are much hotter than the ambient oxygen atoms in the upper thermosphere. Analysis of satellite measurements indicates that the upper thermospheric hydrogen temperature, more precisely the mean kinetic energy of the atomic hydrogen population, increases significantly with declining solar activity, contrary to contemporary understanding of thermospheric behaviour. The existence of hot hydrogen atoms in the upper thermosphere, which is the key to reconciling model predictions and observations, is likely a consequence of low atomic oxygen density leading to incomplete collisional thermalization of the hydrogen population following its kinetic energization through interactions with hot atomic or ionized constituents in the ionosphere, plasmasphere or magnetosphere.

Non-thermal hydrogen atoms in the terrestrial upper thermosphere

PubMed Central

Qin, Jianqi; Waldrop, Lara

2016-01-01

Model predictions of the distribution and dynamical transport of hydrogen atoms in the terrestrial atmosphere have long-standing discrepancies with ultraviolet remote sensing measurements, indicating likely deficiencies in conventional theories regarding this crucial atmospheric constituent. Here we report the existence of non-thermal hydrogen atoms that are much hotter than the ambient oxygen atoms in the upper thermosphere. Analysis of satellite measurements indicates that the upper thermospheric hydrogen temperature, more precisely the mean kinetic energy of the atomic hydrogen population, increases significantly with declining solar activity, contrary to contemporary understanding of thermospheric behaviour. The existence of hot hydrogen atoms in the upper thermosphere, which is the key to reconciling model predictions and observations, is likely a consequence of low atomic oxygen density leading to incomplete collisional thermalization of the hydrogen population following its kinetic energization through interactions with hot atomic or ionized constituents in the ionosphere, plasmasphere or magnetosphere. PMID:27922018

PIC Modeling of Argon Plasma Flow in MNX

NASA Astrophysics Data System (ADS)

Cohen, Samuel; Sefkow, Adam

2007-11-01

A linear helicon-heated plasma device - the Magnetic Nozzle Experiment (MNX) at the Princeton Plasma Physics Laboratory - is used for studies of the formation of strong electrostatic double layers near mechanical and magnetic apertures and the acceleration of plasma ions into supersonic directed beams. In order to characterize the role of the aperture and its involvement with ion acceleration, detailed particle-in-cell simulations are employed to study the effects of the surrounding boundary geometry on the plasma dynamics near the aperture region, within which the transition from a collisional to collisionless regime occurs. The presence of a small superthermal electron population is examined, and the model includes a background neutral population which can be ionized by energetic electrons. By self-consistently evaluating the temporal evolution of the plasma in the vicinity of the aperture, the formation mechanism of the double layer is investigated.

Studies of discharge mechanisms in high pressure gases-applications to high efficiency high power lasers. Ph.D. Thesis. Semiannual Progress Report

NASA Technical Reports Server (NTRS)

Cherrington, B. E.; Verdeyen, J. T.; Eden, J. G.; Leslie, S. G.

1975-01-01

By measuring the absorption and emission cantinua of various states in the cesium/xenon molecule, the collisional rates critical in populating the alkali/rare gas excimer levels have been estimated. Cs atomic states that are weakly optically connected to ground have been shown to form excimer levels that are attractive as potential dissociation lasers. In particular, the (Cs/7 2S/Xe) excited molecule appears promising as a source of high energy laser radiation due to its large dissociation energy, stimulated emission cross section, and small population inversion densities. Monitoring of the optically pumped Cs2 molecular absorption profile in the presence of xenon shows a drastic change with increasing xenon pressure for the Cs2C band. Dominant absorption at large xenon densities is centered around approximately 6380 A as opposed to 6300 A for lower perturber pressure.

Global Modeling of Nebulae with Particle Growth, Drift, and Evaporation Fronts. I. Methodology and Typical Results

NASA Astrophysics Data System (ADS)

Estrada, Paul R.; Cuzzi, Jeffrey N.; Morgan, Demitri A.

2016-02-01

We model particle growth in a turbulent, viscously evolving protoplanetary nebula, incorporating sticking, bouncing, fragmentation, and mass transfer at high speeds. We treat small particles using a moments method and large particles using a traditional histogram binning, including a probability distribution function of collisional velocities. The fragmentation strength of the particles depends on their composition (icy aggregates are stronger than silicate aggregates). The particle opacity, which controls the nebula thermal structure, evolves as particles grow and mass redistributes. While growing, particles drift radially due to nebula headwind drag. Particles of different compositions evaporate at “evaporation fronts” (EFs) where the midplane temperature exceeds their respective evaporation temperatures. We track the vapor and solid phases of each component, accounting for advection and radial and vertical diffusion. We present characteristic results in evolutions lasting 2 × 105 years. In general, (1) mass is transferred from the outer to the inner nebula in significant amounts, creating radial concentrations of solids at EFs; (2) particle sizes are limited by a combination of fragmentation, bouncing, and drift; (3) “lucky” large particles never represent a significant amount of mass; and (4) restricted radial zones just outside each EF become compositionally enriched in the associated volatiles. We point out implications for millimeter to submillimeter SEDs and the inference of nebula mass, radial banding, the role of opacity on new mechanisms for generating turbulence, the enrichment of meteorites in heavy oxygen isotopes, variable and nonsolar redox conditions, the primary accretion of silicate and icy planetesimals, and the makeup of Jupiter’s core.

The dynamical evolution of transiting planetary systems including a realistic collision prescription

NASA Astrophysics Data System (ADS)

Mustill, Alexander J.; Davies, Melvyn B.; Johansen, Anders

2018-05-01

Planet-planet collisions are a common outcome of instability in systems of transiting planets close to the star, as well as occurring during in-situ formation of such planets from embryos. Previous N-body studies of instability amongst transiting planets have assumed that collisions result in perfect merging. Here, we explore the effects of implementing a more realistic collision prescription on the outcomes of instability and in-situ formation at orbital radii of a few tenths of an au. There is a strong effect on the outcome of the growth of planetary embryos, so long as the debris thrown off in collisions is rapidly removed from the system (which happens by collisional processing to dust, and then removal by radiation forces) and embryos are small (<0.1 M⊕). If this is the case, then systems form fewer detectable (≥1 M⊕) planets than systems evolved under the assumption of perfect merging in collisions. This provides some contribution to the "Kepler Dichotomy": the observed over-abundance of single-planet systems. The effects of changing the collision prescription on unstable mature systems of super-Earths are less pronounced. Perfect mergers only account for a minority of collision outcomes in such systems, but most collisions resulting in mass loss are grazing impacts in which only a few per cent. of mass is lost. As a result, there is little impact on the final masses and multiplicities of the systems after instability when compared to systems evolved under the assumption that collisions always result in perfect merging.

COUPLED SPIN AND SHAPE EVOLUTION OF SMALL RUBBLE-PILE ASTEROIDS: SELF-LIMITATION OF THE YORP EFFECT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cotto-Figueroa, Desireé; Statler, Thomas S.; Richardson, Derek C.

2015-04-10

We present the first self-consistent simulations of the coupled spin-shape evolution of small gravitational aggregates under the influence of the YORP effect. Because of YORP’s sensitivity to surface topography, even small centrifugally driven reconfigurations of aggregates can alter the YORP torque dramatically, resulting in spin evolution that can differ qualitatively from the rigid-body prediction. One-third of our simulations follow a simple evolution described as a modified YORP cycle. Two-thirds exhibit one or more of three distinct behaviors—stochastic YORP, self-governed YORP, and stagnating YORP—which together result in YORP self-limitation. Self-limitation confines rotation rates of evolving aggregates to far narrower ranges thanmore » those expected in the classical YORP cycle, greatly prolonging the times over which objects can preserve their sense of rotation. Simulated objects are initially randomly packed, disordered aggregates of identical spheres in rotating equilibrium, with low internal angles of friction. Their shape evolution is characterized by rearrangement of the entire body, including the deep interior. They do not evolve to axisymmetric top shapes with equatorial ridges. Mass loss occurs in one-third of the simulations, typically in small amounts from the ends of a prolate-triaxial body. We conjecture that YORP self-limitation may inhibit formation of top-shapes, binaries, or both, by restricting the amount of angular momentum that can be imparted to a deformable body. Stochastic YORP, in particular, will affect the evolution of collisional families whose orbits drift apart under the influence of Yarkovsky forces, in observable ways.« less

Formation of the Oort Cloud: Coupling Dynamical and Collisional Evolutions of Cometesimals

NASA Astrophysics Data System (ADS)

Charnoz, S.; Morbidelli, A.

2002-09-01

Cometesimals are thought to be born in the region of Giant Planets region and were subsequently ejected to the Oort Cloud by gravitational scattering. Some recent works (Stern & Weisman, 2001 Nature 409) have emphasized that during this phase of violent ejection, random velocities among cometesimals become so high that the majority of kilometer-sized comets might have been destroyed by multiple violent collisions before they reach the Oort Cloud, resulting in a low mass Oort Cloud. We present a new approach which allows to couple dynamical and collisional evolutions. This study focuses on cometesimals starting from the Jupiter-Saturn region. We find that the rapid depletion of the disk, due to the gravitational-scattering exerted by the giant planets, prevents a large fraction of cometesimals from rapid collisional destruction. These conclusions support the classical scenario of Oort Cloud formation.

The slow collisional E×B ion drift characterized as the major instability mechanism of a poorly magnetized plasma column with an inward-directed radial electric field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pierre, Thiéry

2016-04-15

The low-frequency instability of a cylindrical poorly magnetized plasma with an inward-directed radial electric field is studied changing the gas pressure and the ion cyclotron frequency. The unstable frequency always decreases when the gas pressure is increased indicating collisional effects. At a fixed pressure, the unstable frequency increases with the magnetic field when the B-field is low and decreases at larger magnetic field strength. We find that the transition between these two regimes is obtained when the ion cyclotron frequency equals the ion-neutrals collision frequency. This is in agreement with the theory of the slow-ion drift instability induced by themore » collisional slowing of the electric ion drift [A. Simon, Phys. Fluids 6, 382 (1963)].« less

A population study of killer viruses reveals different evolutionary histories of two closely related Saccharomyces sensu stricto yeasts.

PubMed

Chang, Shang-Lin; Leu, Jun-Yi; Chang, Tien-Hsien

2015-08-01

Microbes have evolved ways of interference competition to gain advantage over their ecological competitors. The use of secreted killer toxins by yeast cells through acquiring double-stranded RNA viruses is one such prominent example. Although the killer behaviour has been well studied in laboratory yeast strains, our knowledge regarding how killer viruses are spread and maintained in nature and how yeast cells co-evolve with viruses remains limited. We investigated these issues using a panel of 81 yeast populations belonging to three Saccharomyces sensu stricto species isolated from diverse ecological niches and geographic locations. We found that killer strains are rare among all three species. In contrast, killer toxin resistance is widespread in Saccharomyces paradoxus populations, but not in Saccharomyces cerevisiae or Saccharomyces eubayanus populations. Genetic analyses revealed that toxin resistance in S. paradoxus is often caused by dominant alleles that have independently evolved in different populations. Molecular typing identified one M28 and two types of M1 killer viruses in those killer strains. We further showed that killer viruses of the same type could lead to distinct killer phenotypes under different host backgrounds, suggesting co-evolution between the viruses and hosts in different populations. Taken together, our data suggest that killer viruses vary in their evolutionary histories even within closely related yeast species. © 2015 John Wiley & Sons Ltd.

Morphological Studies of Rising Equatorial Spread F Bubbles

DTIC Science & Technology

1977-11-01

depletions. In the present paper , we wish to discuss equatorial Spread F bubble shapes and vertical rise rates within the context of the collisional...simulation results are needed to ascertain which model fits best. All of the models described in this paper , based on collisional Rayleigh-Taylor type...Analysis of Barium Clouds - Semi-Annual Technical Report, RADC-TR-72-103, Vol. I, Avco Everett Reserach Laboratory, Everett, Mass., January 1972

Collisional excitation of interstellar methyl cyanide

NASA Technical Reports Server (NTRS)

Green, Sheldon

1986-01-01

Theoretical calculations are used to determine the collisional excitation rates of methyl cyanide under interstellar molecular cloud conditions. The required Q(L,M) as a function of kinetic temperature were determined by averaging fixed energy IOS (infinite order sudden) results over appropriate Boltzmann distributions of collision energies. At a kinetic temperature of 40 K, rates within a K ladder were found to be accurate to generally better than about 30 percent.

Modeling the ponderomotive interaction of high-power laser beams with collisional plasma: the FDTD-based approach.

PubMed

Lin, Zhili; Chen, Xudong; Ding, Panfeng; Qiu, Weibin; Pu, Jixiong

2017-04-03

The ponderomotive interaction of high-power laser beams with collisional plasma is modeled in the nonrelativistic regime and is simulated using the powerful finite-difference time-domain (FDTD) method for the first time in literature. The nonlinear and dissipative dielectric constant function of the collisional plasma is deduced that takes the ponderomotive effect into account and is implemented in the discrete framework of FDTD algorithms. Maclaurin series expansion approach is applied for implementing the obtained physical model and the time average of the square of light field is extracted by numerically evaluating an integral identity based on the composite trapezoidal rule for numerical integration. Two numerical examples corresponding to two different types of laser beams, Gaussian beam and vortex Laguerre-Gaussian beam, propagating in collisional plasma, are presented for specified laser and plasma parameters to verify the validity of the proposed FDTD-based approach. Simulation results show the anticipated self-focusing and attenuation phenomena of laser beams and the deformation of the spatial density distributions of electron plasma along the beam propagation path. Due to the flexibility of FDTD method in light beam excitation and accurate complex material modeling, the proposed approach has a wide application prospect in the study of the complex laser-plasma interactions in a small scale.

N2 state population in Titan's atmosphere

NASA Astrophysics Data System (ADS)

Lavvas, P.; Yelle, R. V.; Heays, A. N.; Campbell, L.; Brunger, M. J.; Galand, M.; Vuitton, V.

2015-11-01

We present a detailed model for the vibrational population of all non pre-dissociating excited electronic states of N2, as well as for the ground and ionic states, in Titan's atmosphere. Our model includes the detailed energy deposition calculations presented in the past (Lavvas, P. et al. [2011]. Icarus 213(1), 233-251) as well as the more recent developments in the high resolution N2 photo-absorption cross sections that allow us to calculate photo-excitation rates for different vibrational levels of singlet nitrogen states, and provide information for their pre-dissociation yields. In addition, we consider the effect of collisions and chemical reactions in the population of the different states. Our results demonstrate that above 600 km altitude, collisional processes are efficient only for a small sub-set of the excited states limited to the A and W(ν = 0) triplet states, and to a smaller degree to the a‧ singlet state. In addition, we find that a significant population of vibrationally excited ground state N2 survives in Titan's upper atmosphere. Our calculations demonstrate that this hot N2 population can improve the agreement between models and observations for the emission of the c4‧ state that is significantly affected by resonant scattering. Moreover we discuss the potential implications of the vibrationally excited population on the ionospheric densities.

Changes in Age Structure and Rural Community Growth.

ERIC Educational Resources Information Center

McGranahan, David A.

1985-01-01

Whatever migration patterns evolve, changes in the age structure mean that rural communities in general can expect fairly stable elementary school population, reduced high school population, slower growth in new business and employment, and continued increase in the elderly population. (JHZ)

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

USDA-ARS?s Scientific Manuscript database

To gain a detailed understanding of how plant microbes evolve and adapt to hosts, pesticides, and other factors, knowledge of the population dynamics and evolutionary history of populations is crucial. Plant pathogen populations are often clonal or partially clonal which requires different analytica...

Rhyacian A-type tholeiitic granites in southern Brazil: Geochemistry, U-Pb zircon ages and Nd model ages

NASA Astrophysics Data System (ADS)

Mesquita, Maria José; Bitencourt, Maria de Fátima; Nardi, Lauro Stoll; Picanço, Jefferson; Chemale, Farid, Jr.; Pimenta, Vanessa de Almeida

2017-04-01

In the southern South American platform, 2.5 to 2.0 Ga terranes, probably related to the Atlantica supercontinent, occur mainly as minor reworked inliers within Neoproterozoic, Brasiliano/Pan-African orogenic belts, as the Ribeira Belt in southern Brazil. The dispersion of such fragments has generated uncertainties about their geotectonic reconstruction, and their study has been supported mainly by elemental and isotope geochemistry. The southern Ribeira Belt lies between the Paranapanema and Luiz Alves cratons and contains reworked Neoarquean and Paleoproterozoic terranes which outcrop as basement nuclei in supracrustal sequences, as the Setuva Complex. The Água Comprida Suite, situated in the northern part of the Setuva Complex, consists of Amphibole-Biotite Syenogranite (ABS), Porphyritic Biotite Syenogranite (PBS), and Equigranular Biotite Syenogranite (EBS). All granites are foliated and intensively deformed. The oldest foliation (Sn) is marked by augen feldspars set in a recrystallized matrix, followed by a crenulation cleavage (Sn + 1) which evolves to discrete shear zones. ABS is a metaluminous, reduced A-type granite with FeOt / (FeOt + MgO) > 0.9, with high HFSE and REE contents, corresponding to magmas related to continental medium to high-K tholeiitic series. PBS and specially EBS are highly differentiated, metaluminous to peraluminous (EBS), oxidized granites. The increase of Al2O3 and Rb, and decrease of HFS and RE elements relative to ABS indicate their evolution from tholeiitic magmas. The Água Comprida Suite granites are cogenetic rocks evolved from a within-plate mantle source, marked by high Nb, Ta, and Y. The influence of previously metasomatised mantle sources is evidenced by negative Nb, Ti, and P anomalies. The age of ABS is 2187 ± 26 Ma, and that of PBS is between 2180 ± 13 to 2186 ± 22 Ma. The Nd model age of 2.4 Ga, and εNd(2.18 Ga) between - 0.23 and - 0.27 support the interpretation of ABS being formed from juvenile material with a minor crustal component. The deviation of εNd(2.18 Ga) for PBS and EBS (- 0.69 to - 2.65), plus the higher Nd model ages (2.4 to 2.5 Ga) suggest crustal contamination. A post-collisional environment for the interaction of the mafic tholeiitic and felsic crustal magmas is suggested for the formation of the Água Comprida Suite, based mainly on geochemical features of these magmas. Post-collisional environments are still not described in the Rhyacian orogenies of southern Brazil, and this proposition may be an important contribution for the study of the final period of amalgamation of the Paleoproterozoic supercontinent in southern South America.

Vibrational Population Distribution in Formaldehyde Expanding from Chen Pyrolysis Nozzle Measured by Chirped Pulse Millimeter Wave Spectroscopy

NASA Astrophysics Data System (ADS)

Kuyanov-Prozument, Kirill; Vasiliou, Angayle; Park, G. Barratt; Muenter, John S.; Stanton, John F.; Ellison, G. Barney; Field, Robert W.

2011-06-01

Knowing the vibrational population distribution of unimolecular fragmentation reaction products can reveal the reaction mechanism. Here, we applied Chirped Pulse Millimeter Wave (CPmmW) spectroscopy, invented by Brooks Pate and co-workers, to detect the vibrational population distribution of formaldehyde produced by pyrolysis of methyl nitrite (CH_3ONO) or ethyl nitrite (CH_3CH_2ONO). The pure rotational spectrum contains information about vibrational populations via the known vibration dependence of the rotational constants, which is easily observed in the millimeter-wave spectrum. Only two of six vibrational modes of formaldehyde are significantly populated in both pyrolysis decomposition reactions and in an expansion of pure formaldehyde, suggesting that it is the collisional energy transfer that primarily determines the vibrational population distribution. The non-Boltzmann population distribution among the observed vibrational modes demonstrates non-statistical vibrational energy transfer in formaldehyde. It is in sharp contrast with the equilibrated population distribution measured in OCS and the almost complete vibrational relaxation observed in acetaldehyde. This work is supported by grants from the US Department of Energy and the ACS Petroleum Research Fund, and the National Science Foundation grant "Organic Radicals in Biomass Decomposition: Mechanisms & Dynamics," (CHE-0848606) G. G. Brown, B. C. Dian, K. O. Douglass, S. M. Geyer, S. T. Shipman and B. H. Pate Rev. Sci. Instrum. 79, 053103 (1995).

The effect of selection environment on the probability of parallel evolution.

PubMed

Bailey, Susan F; Rodrigue, Nicolas; Kassen, Rees

2015-06-01

Across the great diversity of life, there are many compelling examples of parallel and convergent evolution-similar evolutionary changes arising in independently evolving populations. Parallel evolution is often taken to be strong evidence of adaptation occurring in populations that are highly constrained in their genetic variation. Theoretical models suggest a few potential factors driving the probability of parallel evolution, but experimental tests are needed. In this study, we quantify the degree of parallel evolution in 15 replicate populations of Pseudomonas fluorescens evolved in five different environments that varied in resource type and arrangement. We identified repeat changes across multiple levels of biological organization from phenotype, to gene, to nucleotide, and tested the impact of 1) selection environment, 2) the degree of adaptation, and 3) the degree of heterogeneity in the environment on the degree of parallel evolution at the gene-level. We saw, as expected, that parallel evolution occurred more often between populations evolved in the same environment; however, the extent of parallel evolution varied widely. The degree of adaptation did not significantly explain variation in the extent of parallelism in our system but number of available beneficial mutations correlated negatively with parallel evolution. In addition, degree of parallel evolution was significantly higher in populations evolved in a spatially structured, multiresource environment, suggesting that environmental heterogeneity may be an important factor constraining adaptation. Overall, our results stress the importance of environment in driving parallel evolutionary changes and point to a number of avenues for future work for understanding when evolution is predictable. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

The Genetic Basis for Evolved Tolerance to Dioxin-Like Compounds in Wild Atlantic Killifish: More Than the Aryl Hydrocarbon Receptor

EPA Science Inventory

Populations of Atlantic killifish (Fundulus heteroclitus) resident to some US urban estuaries have independently evolved extreme and inherited tolerance to toxic dioxin-like compounds (DLCs). To further understand the genetic basis for this trait, we densely genotyped families o...

Atomic data and line intensities for the S V ion

NASA Astrophysics Data System (ADS)

Iorga, C.; Stancalie, V.

2017-05-01

The energy levels, oscillator strengths, spontaneous radiative decay rates, lifetimes and electron impact collision strengths have been obtained for the [ Ne ] 3s nl, [ Ne ] 3p nl, [ Ne ] 3d nl configurations belonging to S V ion, with n ≤ 7 and l ≤ 4, resulting in 567 fine-structure levels. The calculations have been performed within the fully relativistic Flexible Atomic Code (FAC, Gu, 2008) framework and the distorted wave approximation. To attain the desired accuracy for the levels energy, the valence-valence and valence-core correlations have been taken care of by including 96 configuration state functions (CSFs) in the model, reaching a total of 3147 fine-structure levels. Two separate calculations have been performed with the local central potential computed for two different average configurations. A third calculation is also performed without the addition of the core-excited states in the atomic model for completeness. The effects of slightly different mean configurations and valence-core correlations on the energy levels and decay rates are investigated. The collision data have been computed employing the relativistic distorted-wave method along with the atomic model containing the 96 CSFs and corresponding to the ground state mean configuration. The collision strengths corresponding to excitation from the first four fine-structure levels are given for five energy values of the scattered electron 2.65, 6.18, 11.02, 17.36, 25.43 Rydberg, plus an additional variable small energy value near the threshold. A collisional-radiative model has been employed to solve the rate equations for the populations of the 567 fine-structure levels, for a temperature of LogTE(K) = 5.2 corresponding to the maximum abundance of S V, and at densities 106-1016cm-3, assuming a Maxwellian electron energy distribution function and black body radiation of temperature 6000 K and dilution factor 0.35 for the photon distribution function. The main processes responsible for the level population variations are the electron-impact collisional excitation and the radiative decay along with their inverse processes. As a result, the level populations along with the spectral high-line intensity ratios are provided.

Topological Signatures for Population Admixture

USDA-ARS?s Scientific Manuscript database

Topological Signatures for Population AdmixtureDeniz Yorukoglu1, Filippo Utro1, David Kuhn2, Saugata Basu3 and Laxmi Parida1* Abstract Background: As populations with multi-linear transmission (i.e., mixing of genetic material from two parents, say) evolve over generations, the genetic transmission...

Collisional-Radiative Modeling of Free-Burning Arc Plasma in Argon

DTIC Science & Technology

2013-06-01

temeratures of electrons and heavy particles was demonstrated. The plasma chemistry is important but yet just one element of the complex arc...description. Therefore, the present work is aimed at the analysis of the plasma chemistry in a way that the model enables a deeper look into the polulations... PLASMA CHEMISTRY The present study aims at analyzing the collisional and radiative processes in argon with a view toward application to non

Ion acoustic solitons in magnetized collisional non-thermal dusty plasmas

NASA Astrophysics Data System (ADS)

Sultana, S.

2018-05-01

The oblique propagation of ion-acoustic solitary waves (IASWs) is considered, in a magnetized non-thermal collisional dusty plasma, composed of non-Maxwelian κ-distributed electrons, inertial ions, and stationary dust. The reductive perturbation approach is adopted to derive the damped Korteweg de-Vries (dKdV) equation, and the dissipative oblique ion-acoustic wave properties are investigated in terms of different key plasma parameters via the numerical solution of the dKdV equation. The collisional effect, describing the ion-neutral collision in the plasma, is taken into account, and seen to influence the dynamics of IASWs significantly. The basic features of IASWs are observed to modify, and the polarity of the wave is seen to change due to the variation of dust to that of ion number density and also due to the variation of the supethermality index κ in the considered plasma system.

Electromagnetic eigenmodes of collisional and collisionless plasmas and their stability to stimulated Brillouin scattering

NASA Astrophysics Data System (ADS)

Pathak, Vishwa Bandhu; Tripathi, V. K.

2007-02-01

Nonlinear electromagnetic eigenmodes of collisional and collisionless plasmas, when the temporal extent of the modes is longer than the ambipolar diffusion time, have been investigated. The nonlinearity in a collisionless plasma arises through ponderomotive force, whereas in collisional plasmas Ohmic nonlinearity prevails. The mode structure in both cases, representing a balance between the nonlinearity-induced self-convergence and diffraction-induced divergence, closely resembles Gaussian form. The spot size of the mode decreases with the increasing axial amplitude of the laser, attains a minimum, and then rises very gradually. The modes are susceptible to stimulated Brillouin backscattering. The growth rate of the Brillouin process initially increases with mode amplitude, attains a maximum, and then decreases. The reduction in the growth rate is caused by strong electron evacuation from the axial region by the ponderomotive force and thermal pressure gradient force created by nonuniform Ohmic heating.

Constraining heating processes in the solar wind with kinetic properties of heavy ions

NASA Astrophysics Data System (ADS)

Kasper, J. C.; Tracy, P.; Zurbuchen, T.; Raines, J. M.; Gilbert, J. A.; Shearer, P.

2016-12-01

Heavy ion components (A > 4 amu) in collisionally young solar wind plasma show a clear, stable dependence of temperature on mass, probably reflecting the conditions in the solar corona. Using results from the Solar Wind Ion Composition Spectrometer (SWICS) onboard the Advanced Composition Explorer (ACE), we find that the heavy ion temperatures are well organized by a simple linear fit of the form Ti/Tp=(1.35+/- .02) mi/mp. Most importantly we find that the current model predictions based on turbulent transport and kinetic dissipation are in agreement with observed nonthermal heating in intermediate collisional age plasma for m/q < 3.5 amu/e, but are not in quantitative or qualitative agreement with the lowest collisional age results. These dependencies provide new constraints on the physics of ion heating in multispecies plasma, along with predictions to be tested by the upcoming Solar Probe Plus and Solar Orbiter missions to the near-Sun environment.

Parallel Transport with Sheath and Collisional Effects in Global Electrostatic Turbulent Transport in FRCs

NASA Astrophysics Data System (ADS)

Bao, Jian; Lau, Calvin; Kuley, Animesh; Lin, Zhihong; Fulton, Daniel; Tajima, Toshiki; Tri Alpha Energy, Inc. Team

2017-10-01

Collisional and turbulent transport in a field reversed configuration (FRC) is studied in global particle simulation by using GTC (gyrokinetic toroidal code). The global FRC geometry is incorporated in GTC by using a field-aligned mesh in cylindrical coordinates, which enables global simulation coupling core and scrape-off layer (SOL) across the separatrix. Furthermore, fully kinetic ions are implemented in GTC to treat magnetic-null point in FRC core. Both global simulation coupling core and SOL regions and independent SOL region simulation have been carried out to study turbulence. In this work, the ``logical sheath boundary condition'' is implemented to study parallel transport in the SOL. This method helps to relax time and spatial steps without resolving electron plasma frequency and Debye length, which enables turbulent transports simulation with sheath effects. We will study collisional and turbulent SOL parallel transport with mirror geometry and sheath boundary condition in C2-W divertor.

Anti-screening optically allowed and forbidden collisional excitations in nonthermal astrophysical plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hong, Woo-Pyo; Jung, Young-Dae, E-mail: ydjung@hanyang.ac.kr

2014-08-01

The influence of nonthermal shielding on the optically allowed and forbidden anti-screening channels for ion-ion collisional excitations is investigated in astrophysical Lorentzian plasmas. The semiclassical trajectory method and effective interaction Hamiltonian are employed to obtain the transition amplitudes, differential cross-sections, and momentum transfer-dependent effective projectile charges for the optically allowed and forbidden excitation channels as functions of the impact parameter, collision energy, Debye radius, and spectral index of nonthermal astrophysical plasmas. It is found that the nonthermal effect suppresses the ion-ion collisional excitation probability in astrophysical Lorentzian plasmas. Additionally, the influence of nonthermal shielding on the optically allowed transition ismore » found to be more significant than that on the optically forbidden transition. The variations of the nonthermal shielding effects on the optically allowed and forbidden anti-screening channels in astrophysical nonthermal plasmas are also discussed.« less

Hydrogen atom scrambling in selectively labeled anionic peptides upon collisional activation by MALDI tandem time-of-flight mass spectrometry.

PubMed

Bache, Nicolai; Rand, Kasper D; Roepstorff, Peter; Ploug, Michael; Jørgensen, Thomas J D

2008-12-01

We have previously shown that peptide amide hydrogens undergo extensive intramolecular migration (i.e., complete hydrogen scrambling) upon collisional activation of protonated peptides (Jørgensen et al. J. Am. Chem. Soc. 2005, 127, 2785-2793). The occurrence of hydrogen scrambling enforces severe limitations on the application of gas-phase fragmentation as a convenient method to obtain information about the site-specific deuterium uptake for proteins and peptides in solution. To investigate whether deprotonated peptides exhibit a lower level of scrambling relative to their protonated counterparts, we have now measured the level of hydrogen scrambling in a deprotonated, selectively labeled peptide using MALDI tandem time-of-flight mass spectrometry. Our results conclusively show that hydrogen scrambling is prevalent in the deprotonated peptide upon collisional activation. The amide hydrogens ((1)H/(2)H) have migrated extensively in the anionic peptide, thereby erasing the original regioselective deuteration pattern obtained in solution.

Ambient tremors in a collisional orogenic belt

USGS Publications Warehouse

Chuang, Lindsay Yuling; Chen, Kate Huihsuan; Wech, Aaron G.; Byrne, Timothy; Peng, Wei

2014-01-01

Deep-seated tectonic tremors have been regarded as an observation tied to interconnected fluids at depth, which have been well documented in worldwide subduction zones and transform faults but not in a collisional mountain belt. In this study we explore the general features of collisional tremors in Taiwan and discuss the possible generation mechanism. In the 4 year data, we find 231 ambient tremor episodes with durations ranging from 5 to 30 min. In addition to a coseismic slip-induced stress change from nearby major earthquake, increased tremor rate is also highly correlated with the active, normal faulting earthquake swarms at the shallower depth. Both the tremor and earthquake swarm activities are confined in a small, area where the high attenuation, high thermal anomaly, the boundary between high and low resistivity, and localized veins on the surfaces distributed, suggesting the involvement of fluids from metamorphic dehydration within the orogen.

The effect of catastrophic collisional fragmentation and diffuse medium accretion on a computational interstellar dust system

NASA Technical Reports Server (NTRS)

Liffman, Kurt

1990-01-01

The effects of catastrophic collisional fragmentation and diffuse medium accretion on a the interstellar dust system are computed using a Monte Carlo computer model. The Monte Carlo code has as its basis an analytic solution of the bulk chemical evolution of a two-phase interstellar medium, described by Liffman and Clayton (1989). The model is subjected to numerous different interstellar processes as it transfers from one interstellar phase to another. Collisional fragmentation was found to be the dominant physical process that shapes the size spectrum of interstellar dust. It was found that, in the diffuse cloud phase, 90 percent of the refractory material is locked up in the dust grains, primarily due to accretion in the molecular medium. This result is consistent with the observed depletions of silicon. Depletions were found to be affected only slightly by diffuse cloud accretion.

The radial electric field dynamics in the neoclassical plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Novakovskii, S.V.; Liu, C.S.; Sagdeev, R.Z.

1997-12-01

A numerical simulation and analytical theory of the radial electric field dynamics in low collisional tokamak plasmas are presented. An initial value code {open_quotes}ELECTRIC{close_quotes} has been developed to solve the ion drift kinetic equation with a full collisional operator in the Hirshman{endash}Sigmar{endash}Clarke form together with the Maxwell equations. Different scenarios of relaxation of the radial electric field toward the steady-state in response to sudden and adiabatic changes of the equilibrium temperature gradient are presented. It is shown, that while the relaxation is usually accompanied by the geodesic acoustic oscillations, during the adiabatic change these oscillations are suppressed and only themore » magnetic pumping remains. Both the collisional damping and the Landau resonance interaction are shown to be important relaxation mechanisms. Scalings of the relaxation rates versus basic plasma parameters are presented. {copyright} {ital 1997 American Institute of Physics.}« less

Behavior of collisional sheath in electronegative plasma with q-nonextensive electron distribution

NASA Astrophysics Data System (ADS)

Borgohain, Dima Rani; Saharia, K.

2018-03-01

Electronegative plasma sheath is addressed in a collisional unmagnetized plasma consisting of q-nonextensive electrons, Boltzmann distributed negative ions and cold fluid positive ions. Considering the positive ion-neutral collisions and ignoring the effects of ionization and collisions between negative species and positive ions (neutrals), a modified Bohm sheath criterion and hence floating potential are derived by using multifluid model. Using the modified Bohm sheath criterion, the sheath characteristics such as spatial profiles of density, potential and net space charge density have been numerically investigated. It is found that increasing values of q-nonextensivity, electronegativity and collisionality lead to a decrease of the sheath thickness and an increase of the sheath potential and the net space charge density. With increasing values of the electron temperature to negative ion temperature ratio, the sheath thickness increases and the sheath potential as well as the net space charge density in the sheath region decreases.

Nonextensive statistics and skin depth of transverse wave in collisional plasma

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hashemzadeh, M., E-mail: hashemzade@gmail.com

Skin depth of transverse wave in a collisional plasma is studied taking into account the nonextensive electron distribution function. Considering the kinetic theory for charge particles and using the Bhatnagar-Gross-Krook collision model, a generalized transverse dielectric permittivity is obtained. The transverse dispersion relation in different frequency ranges is investigated. Obtaining the imaginary part of the wave vector from the dispersion relation, the skin depth for these frequency ranges is also achieved. Profiles of the skin depth show that by increasing the q parameter, the penetration depth decreases. In addition, the skin depth increases by increasing the electron temperature. Finally, itmore » is found that in the high frequency range and high electron temperature, the penetration depth decreases by increasing the collision frequency. In contrast, by increasing the collision frequency in a highly collisional frequency range, the skin depth of transverse wave increases.« less

Thermal Boundary Layer Effects on Line-of-Sight Tunable Diode Laser Absorption Spectroscopy (TDLAS) Gas Concentration Measurements.

PubMed

Qu, Zhechao; Werhahn, Olav; Ebert, Volker

2018-06-01

The effects of thermal boundary layers on tunable diode laser absorption spectroscopy (TDLAS) measurement results must be quantified when using the line-of-sight (LOS) TDLAS under conditions with spatial temperature gradient. In this paper, a new methodology based on spectral simulation is presented quantifying the LOS TDLAS measurement deviation under conditions with thermal boundary layers. The effects of different temperature gradients and thermal boundary layer thickness on spectral collisional widths and gas concentration measurements are quantified. A CO 2 TDLAS spectrometer, which has two gas cells to generate the spatial temperature gradients, was employed to validate the simulation results. The measured deviations and LOS averaged collisional widths are in very good agreement with the simulated results for conditions with different temperature gradients. We demonstrate quantification of thermal boundary layers' thickness with proposed method by exploitation of the LOS averaged the collisional width of the path-integrated spectrum.

Collisional entanglement fidelities in quantum plasmas including strong quantum recoil and oscillation effects

NASA Astrophysics Data System (ADS)

Lee, Myoung-Jae; Jung, Young-Dae

2017-10-01

The quantum recoil and oscillation effects on the entanglement fidelity and the electron-exchange function for the electron-ion collision are investigated in a semiconductor plasma by using the partial wave analysis and effective interaction potential in strong quantum recoil regime. The magnitude of the electron-exchange function is found to increase as the collision energy increases, but it decreases with an increase in the exchange parameter. It is also found that the collisional entanglement fidelity in strong quantum recoil plasmas is enhanced by the quantum-mechanical and shielding effects. The collisional entanglement fidelity in a semiconductor plasma is also enhanced by the collective plasmon oscillation and electron-exchange effect. However, the electron-exchange effect on the fidelity ratio function is reduced as the plasmon energy increases. Moreover, the electron-exchange influence on the fidelity ratio function is found to increase as the Fermi energy in the semiconductor plasma increases.

Analytic Methods for Predicting Significant Multi-Quanta Effects in Collisional Molecular Energy Transfer

NASA Technical Reports Server (NTRS)

Bieniek, Ronald J.

1996-01-01

Collision-induced transitions can significantly affect molecular vibrational-rotational populations and energy transfer in atmospheres and gaseous systems. This, in turn. can strongly influence convective heat transfer through dissociation and recombination of diatomics. and radiative heat transfer due to strong vibrational coupling. It is necessary to know state-to-state rates to predict engine performance and aerothermodynamic behavior of hypersonic flows, to analyze diagnostic radiative data obtained from experimental test facilities, and to design heat shields and other thermal protective systems. Furthermore, transfer rates between vibrational and translational modes can strongly influence energy flow in various 'disturbed' environments, particularly where the vibrational and translational temperatures are not equilibrated.

Far-infrared rotational emission by carbon monoxide

NASA Technical Reports Server (NTRS)

Mckee, C. F.; Storey, J. W. V.; Watson, D. M.; Green, S.

1982-01-01

Accurate theoretical collisional excitation rates are used to determine the emissivities of CO rotational lines for an H2 molecule content of at least 10,000/cu cm, temperature in the range 100-3000 K, and J not more than 60 under the assumption that the lines are optically thin. An approximate analytic expression for the emissivities which is valid in this region is obtained. Population inversions in the lower rotational levels occur for densities of molecular H2 around 1000-100,000/cu cm and temperatures T not more than about 50 K provided photon trapping is unimportant. Interstellar shocks observed edge-on are a potential source of weak millimeter-wave CO maser emission.

Spectroscopy of X-ray Photoionized Plasmas in the Laboratory

NASA Astrophysics Data System (ADS)

Liedahl, Duane A.; Loisel, Guillaume; Bailey, James E.; Nagayama, Taisuke; Hansen, Stephanie B.; Rochau, Gregory; Fontes, Christopher J.; Mancini, Roberto; Kallman, Timothy R.

2018-06-01

The physical processes operating in astrophysical plasmas --- heating, cooling, ionization, recombination, level population kinetics, and radiation transport --- are all accessible to observation in the laboratory. What distinguishes X-ray photoionized plasmas from the more common case of high-temperature collisionally-ionized plasmas is the elevated level of importance of the radiation/matter interaction. The advent of laboratory facilities with the capability to generate high-powered X-ray sources has provided the means by which to study this interaction, which is also fundamental to active galactic nuclei and other accretion-powered objects. We discuss recent and ongoing experiments, with an emphasis on X-ray spectroscopic measurements of silicon plasmas obtained at the Sandia Z Pulsed Power Facility.

Kinematics and spectra of planetary nebulae with O VI-sequence nuclei

NASA Technical Reports Server (NTRS)

Johnson, H. M.

1976-01-01

Spectral features of NGC 5189 and NGC 6905 are tabulated. Fabry-Perot profiles around H alpha and O III lambda 5007 of NGC 5189, NGC 6905, NGC 246, and NGC 1535, are illustrated. The latter planetary nebula is a non-O VI-sequence, comparison object of high excitation. The kinematics of the four planetary nebulae are simply analyzed. Discussion of these data is motivated by the possibility of collisional excitation by high-speed ejecta from broad-lined O VI-sequence nuclei, and by the opportunity to make a comparison with conditions in the supernova remnant or ring nebula, G2.4 + 1.4, which contains an O VI-sequence nucleus of Population I.

Evolution of increased larval competitive ability in Drosophila melanogaster without increased larval feeding rate.

PubMed

Sarangi, Manaswini; Nagarajan, Archana; Dey, Snigdhadip; Bose, Joy; Joshi, Amitabh

2016-09-01

Multiple experimental evolution studies on Drosophila melanogaster in the 1980s and 1990s indicated that enhanced competitive ability evolved primarily through increased larval tolerance to nitrogenous wastes and increased larval feeding and foraging rate, at the cost of efficiency of food conversion to biomass, and this became the widely accepted view of how adaptation to larval crowding evolves in fruitflies.We recently showed that populations of D. ananassae and D. n. nasuta subjected to extreme larval crowding evolved greater competitive ability without evolving higher feeding rates, primarily through a combination of reduced larval duration, faster attainment of minimum critical size for pupation, greater efficiency of food conversion to biomass, increased pupation height and, perhaps, greater urea/ammonia tolerance. This was a very different suite of traits than that seen to evolve under similar selection in D. melanogaster and was closer to the expectations from the theory of K-selection. At that time, we suggested two possible reasons for the differences in the phenotypic correlates of greater competitive ability seen in the studies with D. melanogaster and the other two species. First, that D. ananassae and D. n. nasuta had a very different genetic architecture of traits affecting competitive ability compared to the long-term laboratory populations of D. melanogaster used in the earlier studies, either because the populations of the former two species were relatively recently wild-caught, or by virtue of being different species. Second, that the different evolutionary trajectories in D. ananassae and D. n. nasuta versus D. melanogaster were a reflection of differences in the manner in which larval crowding was imposed in the two sets of selection experiments. The D. melanogaster studies used a higher absolute density of eggs per unit volume of food, and a substantially larger total volume of food, than the studies on D. ananassae and D. n. nasuta. Here, we show that long-term laboratory populations of D. melanogaster, descended from some of the populations used in the earlier studies, evolve essentially the same set of traits as the D. ananassae and D. n. nasuta crowding-adapted populations when subjected to a similar larval density at low absolute volumes of food. As in the case of D. ananassae and D. n. nasuta, and in stark contrast to earlier studies with D. melanogaster, these crowding-adapted populations of D. melanogaster did not evolve greater larval feeding rates as a correlate of increased competitive ability. The present results clearly suggest that the suite of phenotypes through which the evolution of greater competitive ability is achieved in fruitflies depends critically not just on larval density per unit volume of food, but also on the total amount of food available in the culture vials. We discuss these results in the context of an hypothesis about how larval density and the height of the food column in culture vials might interact to alter the fitness costs and benefits of increased larval feeding rates, thus resulting in different routes to the evolution of greater competitive ability, depending on the details of exactly how the larval crowding was implemented.

Consequences of parental care on population dynamics

NASA Astrophysics Data System (ADS)

de Oliveira, S. Moss

1999-12-01

We review the results obtained using the Penna model for biological ageing (T.J.P. Penna, J. Stat. Phys. 78 (1995) 1629) when different strategies of parental care are introduced into evolving populations. These results concern to: longevity of semelparous populations; self-organization of female menopause; the spatial distribution of the populations and finally, sexual fidelity.

Inertia: the discrepancy between individual and common good in dispersal and prospecting behaviour.

PubMed

Delgado, María del Mar; Ratikainen, Irja I; Kokko, Hanna

2011-08-01

The group selection debate of the 1960s made it clear that evolution does not necessarily increase population performance. Individuals can be selected to have traits that diminish a common good and make population persistence difficult. At the extreme, the discrepancy between levels of selection is predicted to make traits evolve towards values at which a population can no longer persist (evolutionary suicide). Dispersal and prospecting are prime examples of traits that have a strong influence on population persistence under environmental and demographic stochasticity. Theory predicts that an 'optimal' dispersal strategy from a population point of view can differ considerably from that produced by individual-level selection. Because dispersal is frequently risky or otherwise costly, individuals are often predicted to disperse less than would be ideal for population performance (persistence or size). We define this discrepancy as 'inertia' and examine current knowledge of its occurrence and effects on population dynamics in nature. We argue that inertia is potentially widespread but that a framework is currently lacking for predicting precisely the extent to which it has a real influence on population persistence. The opposite of inertia, 'hypermobility' (more dispersal by individuals than would maximize population performance) remains a possibility: it is known that highest dispersal rates do not lead to best expected population performance, and examples of such high dispersal evolving exist at least in the theoretical literature. We also show, by considering prospecting behaviour, that similar issues arise in species with advanced cognitive and learning abilities. Individual prospecting strategies and the information acquired during dispersal are known to influence the decisions and therefore the fate of individuals and, as a corollary, populations. Again, the willingness of individuals to sample environments might evolve to levels that are not optimal for populations. This conflict can take intriguing forms. For example, better cognitive abilities of individuals may not always lead to better population-level performance. Simulation studies have found that 'blind' dispersal can lead to better connected metapopulations than cognitively more advanced habitat choice rules: the latter can lead to too many individuals sticking to nearby safe habitat. The study of the mismatch between individual and population fitness should not be a mere intellectual exercise. Population managers typically need to take a population-level view of performance, which may necessitate human intervention if it differs from what is selected for. We conclude that our knowledge of inertia and hypermobility would advance faster if theoretical studies--without much additional effort--quantified the population consequences of the evolving traits and compared this with hypothetical (not selectively favoured) dispersal rules, and if empirical studies were similarly conducted with the differing levels of selection in mind. © 2010 The Authors. Biological Reviews © 2010 Cambridge Philosophical Society.

Bootstrap Current for the Edge Pedestal Plasma in a Diverted Tokamak Geometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koh, S.; Chang, C. S.; Ku, S.

The edge bootstrap current plays a critical role in the equilibrium and stability of the steep edge pedestal plasma. The pedestal plasma has an unconventional and difficult neoclassical property, as compared with the core plasma. It has a narrow passing particle region in velocity space that can be easily modified or destroyed by Coulomb collisions. At the same time, the edge pedestal plasma has steep pressure and electrostatic potential gradients whose scale-lengths are comparable with the ion banana width, and includes a magnetic separatrix surface, across which the topological properties of the magnetic field and particle orbits change abruptly. Amore » driftkinetic particle code XGC0, equipped with a mass-momentum-energy conserving collision operator, is used to study the edge bootstrap current in a realistic diverted magnetic field geometry with a self-consistent radial electric field. When the edge electrons are in the weakly collisional banana regime, surprisingly, the present kinetic simulation confirms that the existing analytic expressions [represented by O. Sauter et al. , Phys. Plasmas 6 , 2834 (1999)] are still valid in this unconventional region, except in a thin radial layer in contact with the magnetic separatrix. The agreement arises from the dominance of the electron contribution to the bootstrap current compared with ion contribution and from a reasonable separation of the trapped-passing dynamics without a strong collisional mixing. However, when the pedestal electrons are in plateau-collisional regime, there is significant deviation of numerical results from the existing analytic formulas, mainly due to large effective collisionality of the passing and the boundary layer trapped particles in edge region. In a conventional aspect ratio tokamak, the edge bootstrap current from kinetic simulation can be significantly less than that from the Sauter formula if the electron collisionality is high. On the other hand, when the aspect ratio is close to unity, the collisional edge bootstrap current can be significantly greater than that from the Sauter formula. Rapid toroidal rotation of the magnetic field lines at the high field side of a tight aspect-ratio tokamak is believed to be the cause of the different behavior. A new analytic fitting formula, as a simple modification to the Sauter formula, is obtained to bring the analytic expression to a better agreement with the edge kinetic simulation results« less

Bootstrap current for the edge pedestal plasma in a diverted tokamak geometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koh, S.; Choe, W.; Chang, C. S.

The edge bootstrap current plays a critical role in the equilibrium and stability of the steep edge pedestal plasma. The pedestal plasma has an unconventional and difficult neoclassical property, as compared with the core plasma. It has a narrow passing particle region in velocity space that can be easily modified or destroyed by Coulomb collisions. At the same time, the edge pedestal plasma has steep pressure and electrostatic potential gradients whose scale-lengths are comparable with the ion banana width, and includes a magnetic separatrix surface, across which the topological properties of the magnetic field and particle orbits change abruptly. Amore » drift-kinetic particle code XGC0, equipped with a mass-momentum-energy conserving collision operator, is used to study the edge bootstrap current in a realistic diverted magnetic field geometry with a self-consistent radial electric field. When the edge electrons are in the weakly collisional banana regime, surprisingly, the present kinetic simulation confirms that the existing analytic expressions [represented by O. Sauter et al., Phys. Plasmas 6, 2834 (1999)] are still valid in this unconventional region, except in a thin radial layer in contact with the magnetic separatrix. The agreement arises from the dominance of the electron contribution to the bootstrap current compared with ion contribution and from a reasonable separation of the trapped-passing dynamics without a strong collisional mixing. However, when the pedestal electrons are in plateau-collisional regime, there is significant deviation of numerical results from the existing analytic formulas, mainly due to large effective collisionality of the passing and the boundary layer trapped particles in edge region. In a conventional aspect ratio tokamak, the edge bootstrap current from kinetic simulation can be significantly less than that from the Sauter formula if the electron collisionality is high. On the other hand, when the aspect ratio is close to unity, the collisional edge bootstrap current can be significantly greater than that from the Sauter formula. Rapid toroidal rotation of the magnetic field lines at the high field side of a tight aspect-ratio tokamak is believed to be the cause of the different behavior. A new analytic fitting formula, as a simple modification to the Sauter formula, is obtained to bring the analytic expression to a better agreement with the edge kinetic simulation results.« less

An improved probabilistic approach for linking progenitor and descendant galaxy populations using comoving number density

NASA Astrophysics Data System (ADS)

Wellons, Sarah; Torrey, Paul

2017-06-01

Galaxy populations at different cosmic epochs are often linked by cumulative comoving number density in observational studies. Many theoretical works, however, have shown that the cumulative number densities of tracked galaxy populations not only evolve in bulk, but also spread out over time. We present a method for linking progenitor and descendant galaxy populations which takes both of these effects into account. We define probability distribution functions that capture the evolution and dispersion of galaxy populations in number density space, and use these functions to assign galaxies at redshift zf probabilities of being progenitors/descendants of a galaxy population at another redshift z0. These probabilities are used as weights for calculating distributions of physical progenitor/descendant properties such as stellar mass, star formation rate or velocity dispersion. We demonstrate that this probabilistic method provides more accurate predictions for the evolution of physical properties than the assumption of either a constant number density or an evolving number density in a bin of fixed width by comparing predictions against galaxy populations directly tracked through a cosmological simulation. We find that the constant number density method performs least well at recovering galaxy properties, the evolving method density slightly better and the probabilistic method best of all. The improvement is present for predictions of stellar mass as well as inferred quantities such as star formation rate and velocity dispersion. We demonstrate that this method can also be applied robustly and easily to observational data, and provide a code package for doing so.

The Evolution of Vicia ramuliflora (Fabaceae) at Tetraploid and Diploid Levels Revealed with FISH and RAPD

PubMed Central

Han, Ying; Liu, Yuan; Wang, Haoyou; Liu, Xiangjun

2017-01-01

Vicia ramuliflora L. is a widely distributed species in Eurasia with high economic value. For past 200 years, it has evolved a tetraploid cytotype and new subspecies at the diploid level. Based on taxonomy, cytogeography and other lines of evidence, previous studies have provided valuable information about the evolution of V. ramuliflora ploidy level, but due to the limited resolution of traditional methods, important questions remain. In this study, fluorescence in situ hybridization (FISH) and random amplified polymorphic DNA (RAPD) were used to analyze the evolution of V. ramuliflora at the diploid and tetraploid levels. Our aim was to reveal the genomic constitution and parents of the tetraploid V. ramuliflora and the relationships among diploid V. ramuliflora populations. Our study showed that the tetraploid cytotype of V. ramuliflora at Changbai Mountains (M) has identical 18S and 5S rDNA distribution patterns with the diploid Hengdaohezi population (B) and the diploid Dailing population (H). However, UPGMA clustering, Neighbor-Joining clustering and principal coordinates analysis based on RAPD showed that the tetraploid cytotype (M) has more close relationships with Qianshan diploid population T. Based on our results and the fact that interspecific hybridization among Vicia species is very difficult, we think that the tetraploid V. ramuliflora is an autotetraploid and its genomic origin still needs further study. In addition, our study also found that Qianshan diploid population (T) had evolved distinct new traits compared with other diploid populations, which hints that V. ramuliflora evolved further at diploid level. We suggest that diploid population T be re-classified as a new subspecies. PMID:28135314

The Evolution of Vicia ramuliflora (Fabaceae) at Tetraploid and Diploid Levels Revealed with FISH and RAPD.

PubMed

Han, Ying; Liu, Yuan; Wang, Haoyou; Liu, Xiangjun

2017-01-01

Vicia ramuliflora L. is a widely distributed species in Eurasia with high economic value. For past 200 years, it has evolved a tetraploid cytotype and new subspecies at the diploid level. Based on taxonomy, cytogeography and other lines of evidence, previous studies have provided valuable information about the evolution of V. ramuliflora ploidy level, but due to the limited resolution of traditional methods, important questions remain. In this study, fluorescence in situ hybridization (FISH) and random amplified polymorphic DNA (RAPD) were used to analyze the evolution of V. ramuliflora at the diploid and tetraploid levels. Our aim was to reveal the genomic constitution and parents of the tetraploid V. ramuliflora and the relationships among diploid V. ramuliflora populations. Our study showed that the tetraploid cytotype of V. ramuliflora at Changbai Mountains (M) has identical 18S and 5S rDNA distribution patterns with the diploid Hengdaohezi population (B) and the diploid Dailing population (H). However, UPGMA clustering, Neighbor-Joining clustering and principal coordinates analysis based on RAPD showed that the tetraploid cytotype (M) has more close relationships with Qianshan diploid population T. Based on our results and the fact that interspecific hybridization among Vicia species is very difficult, we think that the tetraploid V. ramuliflora is an autotetraploid and its genomic origin still needs further study. In addition, our study also found that Qianshan diploid population (T) had evolved distinct new traits compared with other diploid populations, which hints that V. ramuliflora evolved further at diploid level. We suggest that diploid population T be re-classified as a new subspecies.

Clear: Composition of Likelihoods for Evolve and Resequence Experiments.

PubMed

Iranmehr, Arya; Akbari, Ali; Schlötterer, Christian; Bafna, Vineet

2017-06-01

The advent of next generation sequencing technologies has made whole-genome and whole-population sampling possible, even for eukaryotes with large genomes. With this development, experimental evolution studies can be designed to observe molecular evolution "in action" via evolve-and-resequence (E&R) experiments. Among other applications, E&R studies can be used to locate the genes and variants responsible for genetic adaptation. Most existing literature on time-series data analysis often assumes large population size, accurate allele frequency estimates, or wide time spans. These assumptions do not hold in many E&R studies. In this article, we propose a method-composition of likelihoods for evolve-and-resequence experiments (Clear)-to identify signatures of selection in small population E&R experiments. Clear takes whole-genome sequences of pools of individuals as input, and properly addresses heterogeneous ascertainment bias resulting from uneven coverage. Clear also provides unbiased estimates of model parameters, including population size, selection strength, and dominance, while being computationally efficient. Extensive simulations show that Clear achieves higher power in detecting and localizing selection over a wide range of parameters, and is robust to variation of coverage. We applied the Clear statistic to multiple E&R experiments, including data from a study of adaptation of Drosophila melanogaster to alternating temperatures and a study of outcrossing yeast populations, and identified multiple regions under selection with genome-wide significance. Copyright © 2017 by the Genetics Society of America.

Rapid evolution meets invasive species control: The potential for pesticide resistance in sea lamprey

USGS Publications Warehouse

Dunlop, Erin S.; McLaughlin, Robert L.; Adams, Jean V.; Jones, Michael L.; Birceanu, Oana; Christie, Mark R.; Criger, Lori A.; Hinderer, Julia L.M.; Hollingworth, Robert M.; Johnson, Nicholas; Lantz, Stephen R.; Li, Weiming; Miller, James R.; Morrison, Bruce J.; Mota-Sanchez, David; Muir, Andrew M.; Sepulveda, Maria S.; Steeves, Todd B.; Walter, Lisa; Westman, Erin; Wirgin, Isaac; Wilkie, Michael P.

2018-01-01

Rapid evolution of pest, pathogen and wildlife populations can have undesirable effects; for example, when insects evolve resistance to pesticides or fishes evolve smaller body size in response to harvest. A destructive invasive species in the Laurentian Great Lakes, the sea lamprey (Petromyzon marinus) has been controlled with the pesticide 3-trifluoromethyl-4-nitrophenol (TFM) since the 1950s. We evaluated the likelihood of sea lamprey evolving resistance to TFM by (1) reviewing sea lamprey life history and control; (2) identifying physiological and behavioural resistance strategies; (3) estimating the strength of selection from TFM; (4) assessing the timeline for evolution; and (5) analyzing historical toxicity data for evidence of resistance. The number of sea lamprey generations exposed to TFM was within the range observed for fish populations where rapid evolution has occurred. Mortality from TFM was estimated as 82-90%, suggesting significant selective pressure. However, 57 years of toxicity data revealed no increase in lethal concentrations of TFM. Vigilance and the development of alternative controls are required to prevent this aquatic invasive species from evolving strategies to evade control.

Molecular spectroscopy and collisional excitation. [in astrophysics

NASA Technical Reports Server (NTRS)

Green, S.

1975-01-01

The paper examines the basic principles underlying the molecular transitions responsible for interstellar molecular spectra. The energy levels of molecules are discussed in detail with special attention given to the Born-Oppenheimer approximation, the electronic Hamiltonian, and the parameters of vibrational and rotational energy. The probabilities for radiative and collisional transitions are calculated. A brief review of techniques for molecular spectroscopy is presented along with methods used to determine collision cross sections on both an experimental and a theoretical basis.

Verlet scheme non-conservativeness for simulation of spherical particles collisional dynamics and method of its compensation

NASA Astrophysics Data System (ADS)

Savin, Andrei V.; Smirnov, Petr G.

2018-05-01

Simulation of collisional dynamics of a large ensemble of monodisperse particles by the method of discrete elements is considered. Verle scheme is used for integration of the equations of motion. Non-conservativeness of the finite-difference scheme is discovered depending on the time step, which is equivalent to a pure-numerical energy source appearance in the process of collision. Compensation method for the source is proposed and tested.

Modeling the Collisional-Plastic Stress Transition for Bin Discharge of Granular Material

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pannala, Sreekanth; Daw, C Stuart; FINNEY, Charles E A

2009-01-01

We propose a heuristic model for the transition between collisional and frictional/plastic stresses in the flow of granular material. Our approach is based on a physically motivated, nonlinear blending function that produces a weighted average of the limiting stresses, depending on the local void fraction in the flow field. Previously published stress models are utilized to describe the behavior in the collisional (Lun et al., 1984) and quasi-static limits (Schaeffer, 1987 and Syamlal et al., 1993). Sigmoidal and hyperbolic tangent functions are used to mimic the observed smooth yet rapid transition between the collisional and plastic stress zones. We implementmore » our stress transition model in an opensource multiphase flow solver, MFIX (Multiphase Flow with Interphase eXchanges, www.mfix.org) and demonstrate its application to a standard bin discharge problem. The model s effectiveness is illustrated by comparing computational predictions to the experimentally derived Beverloo correlation. With the correct choice of function parameters, the model predicts bin discharge rates within the error margins of the Beverloo correlation and is more accurate than one of the alternative granular stress models proposed in the literature. Although a second granular stress model in the literature is also reasonably consistent with the Beverloo correlation, we propose that our alternative blending function is likely to be more adaptable to situations with more complex solids properties (e.g., sticky solids).« less

Transforming healthcare delivery: Why and how accountable care organizations must evolve.

PubMed

Chen, Christopher T; Ackerly, D Clay; Gottlieb, Gary

2016-09-01

Accountable care organizations (ACOs) have shown promise in reducing healthcare spending growth, but have proven to be financially unsustainable for many healthcare organizations. Even ACOs with shared savings have experienced overall losses because the shared savings bonuses have not covered the costs of delivering population health. As physicians and former ACO leaders, we believe in the concept of accountable care, but ACOs need to evolve if they are to have a viable future. We propose the novel possibility of allowing ACOs to bill fee-for-service for their population health interventions, a concept we call population health billing. Journal of Hospital Medicine 2016;11:658-661. © 2016 Society of Hospital Medicine. © 2016 Society of Hospital Medicine.

Modeling collisions in circumstellar debris disks

NASA Astrophysics Data System (ADS)

Nesvold, Erika

2015-10-01

Observations of resolved debris disks show a spectacular variety of features and asymmetries, including inner cavities and gaps, inclined secondary disks or warps, and eccentric, sharp-edged rings. Embedded exoplanets could create many of these features via gravitational perturbations, which sculpt the disk directly and by generating planetesimal collisions. In this thesis, I present the Superparticle Model/Algorithm for Collisions in Kuiper belts and debris disks (SMACK), a new method for simultaneously modeling, in 3-D, the collisional and dynamical evolution of planetesimals in a debris disk with planets. SMACK can simulate azimuthal asymmetries and how these asymmetries evolve over time. I show that SMACK is stable to numerical viscosity and numerical heating over 107 yr, and that it can reproduce analytic models of disk evolution. As an example of the algorithm's capabilities, I use SMACK to model the evolution of a debris ring containing a planet on an eccentric orbit and demonstrate that differential precession creates a spiral structure as the ring evolves, but collisions subsequently break up the spiral, leaving a narrower eccentric ring. To demonstrate SMACK's utility in studying debris disk physics, I apply SMACK to simulate a planet on a circular orbit near a ring of planetesimals that are experiencing destructive collisions. Previous simulations of a planet opening a gap in a collisionless debris disk have found that the width of the gap scales as the planet mass to the 2/7th power (alpha = 2/7). I find that gap sizes in a collisional disk still obey a power law scaling with planet mass, but that the index alpha of the power law depends on the age of the system t relative to the collisional timescale t coll of the disk by alpha = 0.32(t/ tcoll)-0.04, with inferred planet masses up to five times smaller than those predicted by the classical gap law. The increased gap sizes likely stem from the interaction between collisions and the mean motion resonances near the chaotic zone. I investigate the effects of the initial eccentricity distribution of the disk particles and find a negligible effect on the gap size at Jovian planet masses, since collisions tend to erase memory of the initial particle eccentricity distributions. I also find that the presence of Trojan analogs is a potentially powerful diagnostic of planets in the mass range ˜1--10MJup. I apply my model to place new upper limits on planets around Fomalhaut, HR 4796 A, HD 202628, HD 181327, and beta Pictoris. Finally, to show how SMACK can be used to analyze a single debris disk in detail, I present a new model of the beta Pictoris disk and planet system that, for the first time, combines simulations of the colliding planetesimals and the dynamics of the dust grains, allowing me to model features and asymmetries in both submillimeter and scattered light images of the disk. I combine a 100,000 superparticle SMACK simulation with N-body integrations of the dust produced by the simulated collisions. I find that secular perturbations of the planet's measured inclination and eccentricity can explain the observed warp and planetesimal ring, while collisions between planetesimals shape the disk by eroding close-in material. The complex 3D structure of the disk due to the perturbations from the planet creates an azimuthally asymmetric spatial distribution of collisions, which could contribute to the observed azimuthal clump of CO gas seen with ALMA. My simulations of the small dust grains produced by collisions demonstrate that the "birth ring" approximation for beta Pictoris fails to account for the ˜54% of dust mass produced outside of the planetesimal ring. I also reproduce the gross morphology of high-resolution scattered light images of the disk, including the two-disk "x"-pattern seen in scattered light, which has not been replicated by previous dust dynamics models.

Genetic constraints predict evolutionary divergence in Dalechampia blossoms.

PubMed

Bolstad, Geir H; Hansen, Thomas F; Pélabon, Christophe; Falahati-Anbaran, Mohsen; Pérez-Barrales, Rocío; Armbruster, W Scott

2014-08-19

If genetic constraints are important, then rates and direction of evolution should be related to trait evolvability. Here we use recently developed measures of evolvability to test the genetic constraint hypothesis with quantitative genetic data on floral morphology from the Neotropical vine Dalechampia scandens (Euphorbiaceae). These measures were compared against rates of evolution and patterns of divergence among 24 populations in two species in the D. scandens species complex. We found clear evidence for genetic constraints, particularly among traits that were tightly phenotypically integrated. This relationship between evolvability and evolutionary divergence is puzzling, because the estimated evolvabilities seem too large to constitute real constraints. We suggest that this paradox can be explained by a combination of weak stabilizing selection around moving adaptive optima and small realized evolvabilities relative to the observed additive genetic variance.

Field-evolved resistance to λ-cyhalothrin in the lady beetle Eriopis connexa.

PubMed

Costa, P M G; Torres, J B; Rondelli, V M; Lira, R

2018-06-01

Natural enemies are exposed to insecticide sprays for herbivorous species and may evolve field resistance to insecticides. Natural enemies selected for resistance in the field, however, are welcome for pest control. The susceptibility of 20 populations of Eriopis connexa from various crop ecosystems to λ-cyhalothrin was tested. Three bioassays were conducted: (i) topical treatment with lethal dose (LD)50 previously determined for populations considered standard for susceptibility (LD50S) and for resistance (LD50R) to λ-cyhalothrin at technical grade; (ii) dose-mortality assay to calculate the LD for populations exhibiting significant survival to the LD50R; and (iii) determination of survival when exposed to dried residues at field rates. Among the 20 tested populations, seven populations did not survive or survival rates were lower than 10% when treated with LD50R; three populations survived >20%, but lower than 50%; while ten populations exhibited equal or greater survival rates compared with the 50% expected survival for the LD50R. Thus, these ten populations were subjected to dose-mortality response, and the LD50 values varied from 0.046 to 5.44 µg a.i./insect with resistance ratio of 8.52- to 884.08-folds. Adults from these ten populations that were ranked as resistant according to the LD50R exhibited survival from 44.5 to 100% exposed to the lowest and from 38.8 to 100% exposed to the highest field rates of λ-cyhalothrin, respectively. Otherwise, the remaining ten populations ranked as susceptible according to the LD50R showed survival from 3.3 to 56% exposed to the lowest and from 0 to 17.7% exposed to the highest field rates of λ-cyhalothrin, respectively. Therefore, 50% of the tested E. connexa populations exhibited field-evolved resistance to λ-cyhalothrin and the use of a discriminatory LD50 for resistance matched the survival obtained when exposed to the insecticide field rates.

Population Genetic Structure in Glyphosate-Resistant and -Susceptible Palmer Amaranth (Amaranthus palmeri) Populations Using Genotyping-by-sequencing (GBS)

PubMed Central

Küpper, Anita; Manmathan, Harish K.; Giacomini, Darci; Patterson, Eric L.; McCloskey, William B.; Gaines, Todd A.

2018-01-01

Palmer amaranth (Amaranthus palmeri) is a major weed in United States cotton and soybean production systems. Originally native to the Southwest, the species has spread throughout the country. In 2004 a population of A. palmeri was identified with resistance to glyphosate, a herbicide heavily relied on in modern no-tillage and transgenic glyphosate-resistant (GR) crop systems. This project aims to determine the degree of genetic relatedness among eight different populations of GR and glyphosate-susceptible (GS) A. palmeri from various geographic regions in the United States by analyzing patterns of phylogeography and diversity to ascertain whether resistance evolved independently or spread from outside to an Arizona locality (AZ-R). Shikimic acid accumulation and EPSPS genomic copy assays confirmed resistance or susceptibility. With a set of 1,351 single nucleotide polymorphisms (SNPs), discovered by genotyping-by-sequencing (GBS), UPGMA phylogenetic analysis, principal component analysis, Bayesian model-based clustering, and pairwise comparisons of genetic distances were conducted. A GR population from Tennessee and two GS populations from Georgia and Arizona were identified as genetically distinct while the remaining GS populations from Kansas, Arizona, and Nebraska clustered together with two GR populations from Arizona and Georgia. Within the latter group, AZ-R was most closely related to the GS populations from Kansas and Arizona followed by the GR population from Georgia. GR populations from Georgia and Tennessee were genetically distinct from each other. No isolation by distance was detected and A. palmeri was revealed to be a species with high genetic diversity. The data suggest the following two possible scenarios: either glyphosate resistance was introduced to the Arizona locality from the east, or resistance evolved independently in Arizona. Glyphosate resistance in the Georgia and Tennessee localities most likely evolved separately. Thus, modern farmers need to continue to diversify weed management practices and prevent seed dispersal to mitigate herbicide resistance evolution in A. palmeri. PMID:29422910

The Geomorphology of Comet Churymov-Gerasimenko As Revealed By Rosetta/Osiris: Implicationsfor Past Collisional Evolution

NASA Astrophysics Data System (ADS)

Marchi, S.; A'Hearn, M. F.; Barbieri, C.; Barucci, M. A.; Besse, S.; Cremonese, G.; Ip, W. H.; Keller, H. U.; Koschny, D.; Kuhrt, E.; Lamy, P. L.; Marzari, F.; Massironi, M.; Pajola, M.; Rickman, H.; Rodrigo, R.; Sierks, H.; Snodgrass, C.; Thomas, N.; Vincent, J. B.

2014-12-01

In this paper we present the major geomorphological features of comet Churymov-Gerasimenko (C-G), with emphasis on those that may have formed through collisional processes. The C-G nucleus has been imaged with the Rosetta/OSIRIS camera system at varying spatial resolution. At the moment of this writing the maximum spatial resolution achieved is ~20 meter per pixel, and it will improve to reach the unprecedented centimeter-scale in November 2014. This resolution should allow us to identify and characterize pits, lineaments and blocks that could be the result of collisional evolution. Indeed, C-G has spent some 1000 years on orbits crossing the main asteroid belt, and a much longer time in the outer solar system. Collisions may have, therefore, shaped the morphology of the nucleus in various ways. Previously imaged Jupiter Family Comets (e.g., Tempel 1) show significant numbers of pits and lineaments, some of which could be due to collisions. Additional proposed formation mechanisms are related to cometary activity processes, such as volatile outgassing.In addition to small scale features, the overall shape of C-G could also provide insights into the role of collisional processes. A striking feature is that C-G's shape is that of a contact binary. Similar shapes have been observed on rocky asteroids (e.g., Itokawa) and are generally interpreted as an indication of their rubble pile nature. A possibility is that C-G underwent similar processes, and therefore it may be constituted by reaccumulated fragments ejected from a larger precursor. An alternative view is that the current shape is the result of inhomogeneous outgassing activity, which may have dug a ~1-km deep trench responsible for the apparent contact binary shape.The role of the various proposed formation mechanisms (collisional vs outgassing) for both small scale and global features will be investigated and their implications for the evolution of C-G will be discussed.

Rate of novel host invasion affects adaptability of evolving RNA virus lineages.

PubMed

Morley, Valerie J; Mendiola, Sandra Y; Turner, Paul E

2015-08-22

Although differing rates of environmental turnover should be consequential for the dynamics of adaptive change, this idea has been rarely examined outside of theory. In particular, the importance of RNA viruses in disease emergence warrants experiments testing how differing rates of novel host invasion may impact the ability of viruses to adaptively shift onto a novel host. To test whether the rate of environmental turnover influences adaptation, we experimentally evolved 144 Sindbis virus lineages in replicated tissue-culture environments, which transitioned from being dominated by a permissive host cell type to a novel host cell type. The rate at which the novel host 'invaded' the environment varied by treatment. The fitness (growth rate) of evolved virus populations was measured on each host type, and molecular substitutions were mapped via whole genome consensus sequencing. Results showed that virus populations more consistently reached high fitness levels on the novel host when the novel host 'invaded' the environment more gradually, and gradual invasion resulted in less variable genomic outcomes. Moreover, virus populations that experienced a rapid shift onto the novel host converged upon different genotypes than populations that experienced a gradual shift onto the novel host, suggesting a strong effect of historical contingency. © 2015 The Author(s).

Collision lifetimes and impact statistics of near-Earth asteroids

NASA Technical Reports Server (NTRS)

Bottke, W. F., Jr.; Nolan, M. C.; Greenberg, R.

1993-01-01

We have examined the lifetimes of Near-Earth asteroids (NEA's) by directly computing the collision probabilities with other asteroids and with the terrestrial planets. We compare these to the dynamical lifetimes, and to collisional lifetimes assumed by other workers. We discuss the implications of the differences. The lifetimes of NEA's are important because, along with the statistics of craters on the Earth and Moon, they help us to compute the number of NEA's and the rate at which new NEA's are brought to the vicinity of the Earth. Assuming that the NEA population is in steady-state, the lifetimes determine the flux of new bodies needed to replenish the population. Earlier estimates of the lifetimes ignored (or incompletely accounted for) the differences in the velocities of asteroids as they move in their orbits, so our results differ from (for example) Greenberg and Chapman (1983, Icarus 55, 455) and Wetherill (1988, Icarus 76, 1) by factors of 2 to 10. We have computed the collision rates and relative velocities of NEA's with each other, the main-belt asteroids, and the terrestrial planets, using the corrected method described by Bottke et. al. (1992, GRL, in press). We find that NEA's typically have shorter collisional lifetimes than do main-belt asteroids of the same size, due to their high eccentricities, which typically give them aphelia in the main belt. Consequently, they spend a great deal of time in the main belt, and are moving much slower than the bodies around them, making them 'sitting ducks' for impacts with other asteroids. They cross the paths of many objects, and their typical collision velocities are much higher (10-15 km/s) than the collision velocities (5 km/s) among objects within the main belt. These factors combine to give them substantially shorter lifetimes than had been previously estimated.

The Formation of Giant Planets and the Collisional Evolution of Planetesimals: Lessons Learned from the Solar System

NASA Astrophysics Data System (ADS)

Turrini, Diego

2013-07-01

The formation of giant planets is one of the milestones in the history of planetary systems, as they shape the evolution of the protoplanetary disks they are embedded in. While observational facilities approach the sensitivity necessary to probe these primordial phases in disks around other stars (e.g. Quanz et al. 2013), there are still lessons we can draw from our own Solar System. Safronov (1969) was the first to recognize that the formation of Jupiter would trigger the first bombardment in the history of the Solar System by scattering of planetesimals residing near its formation region. This scenario was further explored by Weidenschilling (1975) and Weidenschilling et al. (2001), who observed that part of these planetesimals ejected from the outer Solar System would cross the asteroid belt and contribute to the catastrophic destruction of primordial asteroids. Later, Turrini et al. (2011) showed that the appearance of the orbital resonances with Jupiter in the asteroid belt would create a second but dominant population of impactors. The combination of these two populations of impactors represents the Jovian Early Bombardment (Turrini et al. 2011). The formation of Jupiter is the sole necessary condition to trigger the Jovian Early Bombardment, yet migration can play an important role in enhancing its effects due to the sweeping of the resonances through the asteroid belt (Turrini et al. 2011). Across the Jovian Early Bombardment, collisional erosion played a more important role than catastrophic impacts and could bring to the destruction of planetesimals of 200 km in diameter or even larger (Turrini et al. 2012). As pointed out by Turrini et al. (2012), the processes causing the Jovian Early Bombardment are not exclusive to the Solar Nebula: they are general to all circumstellar disks that host forming giant planets. As a consequence, all these results describe an evolutionary path that is common to planetary systems where giant planets are forming and migrating.

Programming adaptive control to evolve increased metabolite production.

PubMed

Chou, Howard H; Keasling, Jay D

2013-01-01

The complexity inherent in biological systems challenges efforts to rationally engineer novel phenotypes, especially those not amenable to high-throughput screens and selections. In nature, increased mutation rates generate diversity in a population that can lead to the evolution of new phenotypes. Here we construct an adaptive control system that increases the mutation rate in order to generate diversity in the population, and decreases the mutation rate as the concentration of a target metabolite increases. This system is called feedback-regulated evolution of phenotype (FREP), and is implemented with a sensor to gauge the concentration of a metabolite and an actuator to alter the mutation rate. To evolve certain novel traits that have no known natural sensors, we develop a framework to assemble synthetic transcription factors using metabolic enzymes and construct four different sensors that recognize isopentenyl diphosphate in bacteria and yeast. We verify FREP by evolving increased tyrosine and isoprenoid production.

Evolution of Implicit and Explicit Communication in Mobile Robots

NASA Astrophysics Data System (ADS)

de Greeff, Joachim; Nolfi, Stefano

This work investigates the conditions in which a population of embodied agents evolved for the ability to display coordinated/cooperative skills can develop an ability to communicate, whether and to what extent the evolved communication system can complexify during the course of the evolutionary process, and how the characteristics of such communication system varies evolutionarily. The analysis of the obtained results indicates that evolving robots develop a capacity to access/generate information which has a communicative value, an ability to produce different signals encoding useful regularities, and an ability to react appropriately to explicit and implicit signals. The analysis of the obtained results allows us to formulate detailed hypothesis on the evolution of communication for what concern aspects such us: (i) how communication can emerge from a population of initially non-communicating agents, (ii) how communication systems can complexify, (iii) how signals/meanings can originate and how they can be grounded in agents' sensory-motor states.

Evolution under monogamy feminizes gene expression in Drosophila melanogaster.

PubMed

Hollis, Brian; Houle, David; Yan, Zheng; Kawecki, Tadeusz J; Keller, Laurent

2014-03-18

Many genes have evolved sexually dimorphic expression as a consequence of divergent selection on males and females. However, because the sexes share a genome, the extent to which evolution can shape gene expression independently in each sex is controversial. Here, we use experimental evolution to reveal suboptimal sex-specific expression for much of the genome. By enforcing a monogamous mating system in populations of Drosophila melanogaster for over 100 generations, we eliminated major components of selection on males: female choice and male-male competition. If gene expression is subject to sexually antagonistic selection, relaxed selection on males should cause evolution towards female optima. Monogamous males and females show this pattern of feminization in both the whole-body and head transcriptomes. Genes with male-biased expression patterns evolved decreased expression under monogamy, while genes with female-biased expression evolved increased expression, relative to polygamous populations. Our results demonstrate persistent and widespread evolutionary tension between male and female adaptation.

Predissociation and collisional depopulation of the Cs/sub 2/(E) state

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, Z.; Huennekens, J.

1984-11-15

We report here an experimental study of depopulation mechanisms of the Cs/sub 2/(E) state. By combining ratios of atomic to molecular fluorescence with E state lifetimes obtained by the phase shift technique, all studied as a function of Cs density, we were able to obtain absolute values for predissociation, radiative, and collisional depopulation rates as well as the total quenching rates for the Cs/sub 2/(E) state. The results are discussed in relation to those of other experiments.

Two-Color Resonant Four-Wave Mixing Spectroscopy: New Perspectives for Direct Studies of Collisional State-to-State Transfer

NASA Astrophysics Data System (ADS)

Chen, X.; Settersten, T. B.; Radi, P. P.; Kouzov, A. P.

2008-10-01

The two-color resonant four-wave mixing (TC-RFWM) is advertised as a unique spectroscopic device enabling one to directly measure the collisional state-to-state transfer characteristics (rates and correlation times). In contrast to the laser-induced fluorescence, these characteristics are phase-sensitive and open wider opportunities to study the rotational relaxation processes. Further perspectives are offered by the recently recorded collision-induced picosecond TC-RFWM signals of OH. Their quantitative interpretation is now under development.

The nature of the evolution of galaxies by mergers

NASA Technical Reports Server (NTRS)

Chatterjee, Tapan K.

1993-01-01

The merger theory for the formation of elliptical galaxies is examined by conducting a dynamical study of the expected frequency of merging galaxies on the basis of the collisional theory, using galaxy models without halos. The expected merger rates obtained on the basis of the collisional theory fall about a magnitude below the observational value in the present epoch. In the light of current observational evidence and the results obtained, a marked regularity in the formation of ellipticals is indicated, followed by secular evolution by mergers.

Collisional Histories of Comets and Trojan Asteroids: Insights from Forsterite and Enstatite Impact Studies

NASA Technical Reports Server (NTRS)

Lederer. S. M.; Jensen, E. A.; Wooden, D. H.; Lindsay, S. S.; Smith, D. C.; Cintala, M. J.; Nakamura-Messenger, K.; Keller, L. P.

2012-01-01

Impacts into forsterite and orthoenstatite at speeds typically encountered by comets demonstrate that shock imparted by collisions is detectable in the infrared signatures of their dust. The spectral signatures can be traced to physical alterations in their crystalline structures, as observed in TEM imaging and modeled using a dipole approximation. These results yield tantalizing insights into the collisional history of our solar system, as well as the history of individual comets and Trojan asteroids.

LIDT-DD: A New Self-Consistent Debris Disc Model Including Radiation Pressure and Coupling Dynamical and Collisional Evolution

NASA Astrophysics Data System (ADS)

Kral, Q.; Thebault, P.; Charnoz, S.

2014-01-01

The first attempt at developing a fully self-consistent code coupling dynamics and collisions to study debris discs (Kral et al. 2013) is presented. So far, these two crucial mechanisms were studied separately, with N-body and statistical collisional codes respectively, because of stringent computational constraints. We present a new model named LIDT-DD which is able to follow over long timescales the coupled evolution of dynamics (including radiation forces) and collisions in a self-consistent way.

The electromagnetic interchange mode in a partially ionized collisional plasma. [spread F region

NASA Technical Reports Server (NTRS)

Hudson, M. K.; Kennel, C. F.

1974-01-01

A collisional electromagnetic dispersion relation is derived from two-fluid theory for the interchange mode coupled to the Alfven, acoustic, drift and entropy modes in a partially ionized plasma. The fundamental electromagnetic nature of the interchange model is noted; coupling to the intermediate Alfven mode is strongly stabilizing for finite k sub z. Both ion viscous and ion-neutral stabilization are included, and it was found that collisions destroy the ion finite Larmor radius cutoff at short perpendicular wavelengths.

Kinetic model for the collisionless sheath of a collisional plasma

DOE PAGES

Tang, Xian-Zhu; Guo, Zehua

2016-08-04

Collisional plasmas typically have mean-free-path still much greater than the Debye length, so the sheath is mostly collisionless. Once the plasma density, temperature, and flow are specified at the sheath entrance, the profile variation of electron and ion density, temperature, flow speed, and conductive heat fluxes inside the sheath is set by collisionless dynamics, and can be predicted by an analytical kinetic model distribution. Finally, these predictions are contrasted in this paper with direct kinetic simulations, showing good agreement.

Collisional rate coefficients of C3H2 and the determination of physical conditions in molecular clouds

NASA Technical Reports Server (NTRS)

Avery, L. W.; Green, Sheldon

1989-01-01

Collisional excitation rates for C3H2, calculated using the coupled states approximation at temperatures of 10-30 K, are presented. C3H2 produces a number of spectral line pairs whose members are close together in frequency but arise from levels with different excitation energies. The rates are used in statistical equilibrium calculations to illustrate the excitation properties and density-dependent behavior of various C3H2 line ratios.

Collisional and dynamical processes in moon and planet formation

NASA Technical Reports Server (NTRS)

1979-01-01

The collisional and dynamical processes in moon and planet formation are discussed. A hydrodynamic code of collision calculations, the orbital element changes due to gravitational scattering, a validation of the mass shifting algorithm, a theory of rotations, and the origin of asteroids are studied. A numerical model of planet growth is discussed and a methodology to evaluate the rate at which megaregolith increases its depth as a function of total accumulate number of impacts on an initially smooth, coherent surface is described.

Hints of a rotating spiral structure in the innermost regions around IRC +10216

PubMed Central

Quintana-Lacaci, G.; Cernicharo, J.; Agúndez, M.; Prieto, L. Velilla; Castro-Carrizo, A.; Marcelino, N.; Cabezas, C.; Peña, I.; Alonso, J.L.; Zúñiga, J.; Requena, A.; Bastida, A.; Kalugina, Y.; Lique, F.; Guélin, M.

2016-01-01

The Atacama Large Millimeter/submillimeter Array (ALMA) is allowing us to study the innermost regions of the circumstellar envelopes of evolved stars with un-precedented precision and sensitivity. Key processes in the ejection of matter and dust from these objects occur in their inner zones. In this work, we present sub-arcsecond interferometric maps of transitions of metal-bearing molecules towards the prototypical C-rich evolved star IRC +10216. While Al-bearing molecules seem to be present as a roughly spherical shell, the molecular emission from the salts NaCl and KCl presents an elongation in the inner regions, with a central minimum. In order to accurately analyze the emission from the NaCl rotational lines, we present new calculations of the collisional rates for this molecule based on new spectroscopic constants. The most plausible interpretation for the spatial distribution of the salts is a spiral with a NaCl mass of 0.08M☉. Alternatively, a torus of gas and dust would result in similar structures as those observed. From the torus scenario we derive a mass of ~ 1.1 × 10−4M☉. In both cases, the spiral and the torus, the NaCl structure presents an inner minimum of 27 AU. In the case of the torus, the outer radius is 73 AU. The kinematics of both the spiral and the torus suggests that they are slowly expanding and rotating. Alternative explanations for the presence of the elongation are explored. The presence of these features only in KCl and NaCl might be a result of their comparatively high dipole moment with respect to the Al-bearing species. PMID:26997665

Stochasticity and predictability in terrestrial planet formation

NASA Astrophysics Data System (ADS)

Hoffmann, Volker; Grimm, Simon L.; Moore, Ben; Stadel, Joachim

2017-02-01

Terrestrial planets are thought to be the result of a vast number of gravitational interactions and collisions between smaller bodies. We use numerical simulations to show that practically identical initial conditions result in a wide array of final planetary configurations. This is a result of the chaotic evolution of trajectories which are highly sensitive to minuscule displacements. We determine that differences between systems evolved from virtually identical initial conditions can be larger than the differences between systems evolved from very different initial conditions. This implies that individual simulations lack predictive power. For example, there is not a reproducible mapping between the initial and final surface density profiles. However, some key global properties can still be extracted if the statistical spread across many simulations is considered. Based on these spreads, we explore the collisional growth and orbital properties of terrestrial planets, which assemble from different initial conditions (we vary the initial planetesimal distribution, planetesimal masses, and giant planet orbits.). Confirming past work, we find that the resulting planetary systems are sculpted by sweeping secular resonances. Configurations with giant planets on eccentric orbits produce fewer and more massive terrestrial planets on tighter orbits than those with giants on circular orbits. This is further enhanced if the initial mass distribution is biased to the inner regions. In all cases, the outer edge of the system is set by the final location of the ν6 resonance and we find that the mass distribution peaks at the ν5 resonance. Using existing observations, we find that extrasolar systems follow similar trends. Although differences between our numerical modelling and exoplanetary systems remain, we suggest that CoRoT-7, HD 20003 and HD 20781 may host undetected giant planets.

Hints of a rotating spiral structure in the innermost regions around IRC +10216.

PubMed

Quintana-Lacaci, G; Cernicharo, J; Agúndez, M; Prieto, L Velilla; Castro-Carrizo, A; Marcelino, N; Cabezas, C; Peña, I; Alonso, J L; Zúñiga, J; Requena, A; Bastida, A; Kalugina, Y; Lique, F; Guélin, M

2016-02-20

The Atacama Large Millimeter/submillimeter Array (ALMA) is allowing us to study the innermost regions of the circumstellar envelopes of evolved stars with un-precedented precision and sensitivity. Key processes in the ejection of matter and dust from these objects occur in their inner zones. In this work, we present sub-arcsecond interferometric maps of transitions of metal-bearing molecules towards the prototypical C-rich evolved star IRC +10216. While Al-bearing molecules seem to be present as a roughly spherical shell, the molecular emission from the salts NaCl and KCl presents an elongation in the inner regions, with a central minimum. In order to accurately analyze the emission from the NaCl rotational lines, we present new calculations of the collisional rates for this molecule based on new spectroscopic constants. The most plausible interpretation for the spatial distribution of the salts is a spiral with a NaCl mass of 0.08 M ☉ . Alternatively, a torus of gas and dust would result in similar structures as those observed. From the torus scenario we derive a mass of ~ 1.1 × 10 -4 M ☉ . In both cases, the spiral and the torus, the NaCl structure presents an inner minimum of 27 AU. In the case of the torus, the outer radius is 73 AU. The kinematics of both the spiral and the torus suggests that they are slowly expanding and rotating. Alternative explanations for the presence of the elongation are explored. The presence of these features only in KCl and NaCl might be a result of their comparatively high dipole moment with respect to the Al-bearing species.

Hints of a Rotating Spiral Structure in the Innermost Regions around IRC+10216

NASA Astrophysics Data System (ADS)

Quintana-Lacaci, G.; Cernicharo, J.; Agúndez, M.; Velilla Prieto, L.; Castro-Carrizo, A.; Marcelino, N.; Cabezas, C.; Peña, I.; Alonso, J. L.; Zúñiga, J.; Requena, A.; Bastida, A.; Kalugina, Y.; Lique, F.; Guélin, M.

2016-02-01

The Atacama Large Millimeter/submillimeter Array is allowing us to study the innermost regions of the circumstellar envelopes of evolved stars with unprecedented precision and sensitivity. Key processes in the ejection of matter and dust from these objects occur in their inner zones. In this work, we present sub-arcsecond interferometric maps of transitions of metal-bearing molecules toward the prototypical C-rich evolved star IRC +10216. While Al-bearing molecules seem to be present as a roughly spherical shell, the molecular emission from the salts NaCl and KCl presents an elongation in the inner regions with a central minimum. In order to accurately analyze the emission from the NaCl rotational lines, we present new calculations of the collisional rates for this molecule based on new spectroscopic constants. The most plausible interpretation for the spatial distribution of the salts is a spiral with a NaCl mass of 0.08 {M}⊙ . Alternatively, a torus of gas and dust would result in structures similar to those observed. From the torus scenario we derive a mass of ˜1.1 × 10-4 {M}⊙ . In both cases, the spiral and the torus, the NaCl structure presents an inner minimum of 27 AU. In the case of the torus, the outer radius is 73 AU. The kinematics of both the spiral and the torus suggests that they are slowly expanding and rotating. Alternative explanations for the presence of the elongation are explored. The presence of these features only in KCl and NaCl might be a result of their comparatively high dipole moment with respect to the Al-bearing species.

Solar flare model atmospheres

NASA Technical Reports Server (NTRS)

Hawley, Suzanne L.; Fisher, George H.

1993-01-01

Solar flare model atmospheres computed under the assumption of energetic equilibrium in the chromosphere are presented. The models use a static, one-dimensional plane parallel geometry and are designed within a physically self-consistent coronal loop. Assumed flare heating mechanisms include collisions from a flux of non-thermal electrons and x-ray heating of the chromosphere by the corona. The heating by energetic electrons accounts explicitly for variations of the ionized fraction with depth in the atmosphere. X-ray heating of the chromosphere by the corona incorporates a flare loop geometry by approximating distant portions of the loop with a series of point sources, while treating the loop leg closest to the chromospheric footpoint in the plane-parallel approximation. Coronal flare heating leads to increased heat conduction, chromospheric evaporation and subsequent changes in coronal pressure; these effects are included self-consistently in the models. Cooling in the chromosphere is computed in detail for the important optically thick HI, CaII and MgII transitions using the non-LTE prescription in the program MULTI. Hydrogen ionization rates from x-ray photo-ionization and collisional ionization by non-thermal electrons are included explicitly in the rate equations. The models are computed in the 'impulsive' and 'equilibrium' limits, and in a set of intermediate 'evolving' states. The impulsive atmospheres have the density distribution frozen in pre-flare configuration, while the equilibrium models assume the entire atmosphere is in hydrostatic and energetic equilibrium. The evolving atmospheres represent intermediate stages where hydrostatic equilibrium has been established in the chromosphere and corona, but the corona is not yet in energetic equilibrium with the flare heating source. Thus, for example, chromospheric evaporation is still in the process of occurring.

GLOBAL MODELING OF NEBULAE WITH PARTICLE GROWTH, DRIFT, AND EVAPORATION FRONTS. I. METHODOLOGY AND TYPICAL RESULTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Estrada, Paul R.; Cuzzi, Jeffrey N.; Morgan, Demitri A., E-mail: Paul.R.Estrada@nasa.gov

2016-02-20

We model particle growth in a turbulent, viscously evolving protoplanetary nebula, incorporating sticking, bouncing, fragmentation, and mass transfer at high speeds. We treat small particles using a moments method and large particles using a traditional histogram binning, including a probability distribution function of collisional velocities. The fragmentation strength of the particles depends on their composition (icy aggregates are stronger than silicate aggregates). The particle opacity, which controls the nebula thermal structure, evolves as particles grow and mass redistributes. While growing, particles drift radially due to nebula headwind drag. Particles of different compositions evaporate at “evaporation fronts” (EFs) where the midplanemore » temperature exceeds their respective evaporation temperatures. We track the vapor and solid phases of each component, accounting for advection and radial and vertical diffusion. We present characteristic results in evolutions lasting 2 × 10{sup 5} years. In general, (1) mass is transferred from the outer to the inner nebula in significant amounts, creating radial concentrations of solids at EFs; (2) particle sizes are limited by a combination of fragmentation, bouncing, and drift; (3) “lucky” large particles never represent a significant amount of mass; and (4) restricted radial zones just outside each EF become compositionally enriched in the associated volatiles. We point out implications for millimeter to submillimeter SEDs and the inference of nebula mass, radial banding, the role of opacity on new mechanisms for generating turbulence, the enrichment of meteorites in heavy oxygen isotopes, variable and nonsolar redox conditions, the primary accretion of silicate and icy planetesimals, and the makeup of Jupiter’s core.« less

The organization and control of an evolving interdependent population

PubMed Central

Vural, Dervis C.; Isakov, Alexander; Mahadevan, L.

2015-01-01

Starting with Darwin, biologists have asked how populations evolve from a low fitness state that is evolutionarily stable to a high fitness state that is not. Specifically of interest is the emergence of cooperation and multicellularity where the fitness of individuals often appears in conflict with that of the population. Theories of social evolution and evolutionary game theory have produced a number of fruitful results employing two-state two-body frameworks. In this study, we depart from this tradition and instead consider a multi-player, multi-state evolutionary game, in which the fitness of an agent is determined by its relationship to an arbitrary number of other agents. We show that populations organize themselves in one of four distinct phases of interdependence depending on one parameter, selection strength. Some of these phases involve the formation of specialized large-scale structures. We then describe how the evolution of independence can be manipulated through various external perturbations. PMID:26040593

Experimental evolution of protozoan traits in response to interspecific competition.

PubMed

terHorst, C P

2011-01-01

Decades of experiments have demonstrated the ecological effect of competition, but experimental evidence for competitive effects on trait evolution is rare. I measured the evolution of six protozoan traits in response to competitors from the inquiline community of pitcher plants. Replicate populations of Colpoda, a ciliated protozoan, were allowed to evolve in response to intra- and interspecific competition for 20 days (approximately 100 generations), before traits were measured in two common garden environments. Populations that evolved with interspecific competition had smaller cell sizes, produced fewer cysts and had higher population growth rates relative to populations grown in monoculture. The presence of interspecific competitors led to differential lineage sorting, most likely by increasing the strength of selection. These results are the first to demonstrate protozoan evolution in response to competition and may have implications for species coexistence in this system. © 2010 The Author. Journal of Evolutionary Biology © 2010 European Society For Evolutionary Biology.

Experimental Evolution as a High-Throughput Screen for Genetic Adaptations.

PubMed

Cooper, Vaughn S

2018-06-27

Experimental evolution is a method in which populations of organisms, often microbes, are founded by one or more ancestors of known genotype and then propagated under controlled conditions to study the evolutionary process. These evolving populations are influenced by all population genetic forces, including selection, mutation, drift, and recombination, and the relative contributions of these forces may be seen as mysterious. Here, I describe why the outcomes of experimental evolution should be viewed with greater certainty because the force of selection typically dominates. Importantly, any mutant rising rapidly to high frequency in large populations must have acquired adaptive traits in the selective environment. Sequencing the genomes of these mutants can identify genes or pathways that contribute to an adaptation. I review the logic and simple mathematics why this evolve-and-resequence approach is a powerful way to find the mutations or mutation combinations that best increase fitness in any new environment. Copyright © 2018 Cooper.

PARTIAL REPRODUCTIVE ISOLATION OF A RECENTLY DERIVED RESIDENT-FRESHWATER POPULATION OF THREESPINE STICKLEBACK (GASTEROSTEUS ACULEATUS) FROM ITS PUTATIVE ANADROMOUS ANCESTOR

PubMed Central

Furin, Christoff G.; Von Hippel, Frank A.; Bell, Michael A.

2012-01-01

We used no-choice mating trials to test for assortative mating between a newly derived resident-freshwater population (8 – 22 generations since founding) of threespine stickleback (Gasterosteus aculeatus) in Loberg Lake, Alaska and its putative anadromous ancestor as well as a morphologically convergent but distantly related resident-freshwater population. Partial reproductive isolation has evolved between the Loberg Lake population and its ancestor within a remarkably short time period. However, Loberg stickleback readily mate with morphologically similar, but distantly related resident-freshwater stickleback. Partial pre-mating isolation is asymmetrical; anadromous females and smaller, resident-freshwater males from Loberg Lake readily mate, but the anadromous males and smaller Loberg females do not. Our results indicate that pre-mating isolation can begin to evolve in allopatry within a few generations after isolation as a correlated effect of evolution of reduced body size. PMID:23025615

Exploring the collisional evolution of the asteroid belt

NASA Astrophysics Data System (ADS)

Bottke, W.; Broz, M.; O'Brien, D.; Campo Bagatin, A.; Morbidelli, A.

2014-07-01

The asteroid belt is a remnant of planet-formation processes. By modeling its collisional and dynamical history, and linking the results to constraints, we can probe how the planets and small bodies formed and evolved. Some key model constraints are: (i) The wavy shape of the main-belt size distribution (SFD), with inflection points near 100-km, 10--20-km, 1 to a few km, and ˜0.1-km diameter; (ii) The number of asteroid families created by the catastrophic breakup of large asteroid bodies over the last ˜ 4 Gy, with the number of disrupted D > 100 km bodies as small as ˜20 or as large as 60; (iii) the flux of small asteroids derived from the main belt that have struck the Moon over the last 3.5 Ga --- crater SFDs on lunar terrains with known ages suggest the D < 0.1 km projectile population has not varied appreciably over this interval; (iv) Vesta has an intact basaltic crust with two very large basins, but only two, on its surface. Fits to these parameters allow us to predict the shape of the initial main-belt SFD after accretion and the approximate asteroid disruption scaling law, with the latter consistent with numerical hydrocode simulations. Overall, we find that the asteroid belt probably experienced the equivalent of ˜6--10 Gy of comminution over its history. This value may seem strange, considering the solar system is only 4.56 Gy old. One way to interpret it is that the main belt once had more mass that was eliminated by early dynamical processes between 4--4.56 Ga. This would allow for more early grinding, and it would suggest the main belt's wavy-shaped SFD is a ''fossil'' from a more violent early epoch. Simulations suggest that most D > 100 km bodies have been significantly battered, but only a fraction have been catastrophically disrupted. Conversely, most small asteroids today are byproducts of fragmentation events. These results are consistent with growing evidence that most of the prominent meteorite classes were produced by young asteroid families. The big question is how to use what we know to determine the main belt's original size and state. This work is ongoing, but dynamical models hint at many possibilities, including both the late arrival and late removal of material from the main belt. In addition, no model has yet properly accounted for the bombardment of the primordial main belt by leftover planetesimals in the terrestrial planet region. It is also possible to use additional constraints, such as the apparent paucity of Vesta-like or V-type objects in the outer main belt, to argue that the primordial main belt at best only 3--4 its current mass at its start. In our talk, we will review what is known, what has been predicted, and some intriguing directions for the future.

A study of the dynamics and photochemistry of vibrationally excited ozone in the middle atmosphere

NASA Astrophysics Data System (ADS)

Kaufmann, M.; Gil-Lopez, S.; Imk-Iaa Mipas/Envisat Team

The vibrational states of ozone depart from local thermodynamic equilibrium (LTE) due to radiative absorption, chemical pumping, spontaneous emission, and photochemical reaction. The recombination reaction of O+O_2 is the most important source of highly excited ozone, however the distribution of the energy disposal (nascent distribution) is poorly known. In addition, the collisional relaxation scheme is another significant source of uncertainty in the modeling of ozone infrared radiation. We have built a non-LTE model being part of the Generic RAdiative traNsfer AnD non-LTE population Algorithm (GRANADA) that represents the nascent distribution by means of a linear surprisal model. For the collisional relaxation we extrapolate measured rates of the fundamental bands to hot band transitions by using a Landau-Teller type scaling in combination with a relaxation-path dependent energy-gap model. In this talk we present model results in terms of ozone vibrational temperatures and atmospheric limb radiances in the 4-15 μm region. The modeled limb spectra will be compared with measurements from the MIPAS (Michelson Interferometer for Passive Atmosphere Sounding) instrument on board of the polar orbiter ENVISAT. The high spectral resolution of this instrument gives a unique opportunity to observe ozone non-LTE emissions down to the lower stratosphere where ozone densities are high enough to sense even highly excited vibrational states. These give valuable information for the validation of the non-LTE scheme, and therefore will improve the quality of upper mesospheric ozone retrievals.

IONIZATION EQUILIBRIUM TIMESCALES IN COLLISIONAL PLASMAS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, Randall K.; Hughes, John P., E-mail: rsmith@cfa.harvard.ed, E-mail: jph@physics.rutgers.ed

2010-07-20

Astrophysical shocks or bursts from a photoionizing source can disturb the typical collisional plasma found in galactic interstellar media or the intergalactic medium. The spectrum emitted by this plasma contains diagnostics that have been used to determine the time since the disturbing event, although this determination becomes uncertain as the elements in the plasma return to ionization equilibrium. A general solution for the equilibrium timescale for each element arises from the elegant eigenvector method of solution to the problem of a non-equilibrium plasma described by Masai and Hughes and Helfand. In general, the ionization evolution of an element Z inmore » a constant electron temperature plasma is given by a coupled set of Z + 1 first-order differential equations. However, they can be recast as Z uncoupled first-order differential equations using an eigenvector basis for the system. The solution is then Z separate exponential functions, with the time constants given by the eigenvalues of the rate matrix. The smallest of these eigenvalues gives the scale of the slowest return to equilibrium independent of the initial conditions, while conversely the largest eigenvalue is the scale of the fastest change in the ion population. These results hold for an ionizing plasma, a recombining plasma, or even a plasma with random initial conditions, and will allow users of these diagnostics to determine directly if their best-fit result significantly limits the timescale since a disturbance or is so close to equilibrium as to include an arbitrarily long time.« less

Intraspecific competition favours niche width expansion in Drosophila melanogaster.

PubMed

Bolnick, D I

2001-03-22

Ecologists have proposed that when interspecific competition is reduced, competition within a species becomes a potent evolutionary force leading to rapid diversification. This view reflects the observation that populations invading species-poor communities frequently evolve broader niches. Niche expansion can be associated with an increase in phenotypic variance (known as character release), with the evolution of polymorphisms, or with divergence into many species using distinct resources (adaptive radiation). The relationship between intraspecific competition and diversification is known from theory, and has been used as the foundation for some models of speciation. However, there has been little empirical proof that niches evolve in response to intraspecific competition. To test this hypothesis, I introduced cadmium-intolerant Drosophila melanogaster populations to environments containing both cadmium-free and cadmium-laced resources. Here I show that populations experiencing high competition adapted to cadmium more rapidly than low competition populations. This provides experimental confirmation that competition in a population can drive niche expansion onto new resources for which competition is less severe.

Directional selection effects on patterns of phenotypic (co)variation in wild populations

PubMed Central

Patton, J. L.; Hubbe, A.; Marroig, G.

2016-01-01

Phenotypic (co)variation is a prerequisite for evolutionary change, and understanding how (co)variation evolves is of crucial importance to the biological sciences. Theoretical models predict that under directional selection, phenotypic (co)variation should evolve in step with the underlying adaptive landscape, increasing the degree of correlation among co-selected traits as well as the amount of genetic variance in the direction of selection. Whether either of these outcomes occurs in natural populations is an open question and thus an important gap in evolutionary theory. Here, we documented changes in the phenotypic (co)variation structure in two separate natural populations in each of two chipmunk species (Tamias alpinus and T. speciosus) undergoing directional selection. In populations where selection was strongest (those of T. alpinus), we observed changes, at least for one population, in phenotypic (co)variation that matched theoretical expectations, namely an increase of both phenotypic integration and (co)variance in the direction of selection and a re-alignment of the major axis of variation with the selection gradient. PMID:27881744

Stickleback fishes: Bridging the gap between population biology and paleobiology.

PubMed

Bell, M A

1988-12-01

Integration of evolutionary mechanisms and phylogeny requires study of phenotypes that change in the fossil record and continue to evolve in extant populations. Pelvic reduction in the three-spined stickle-back has evolved rapidly in a Miocene fossil assemblage and in numerous extant isolated lake populations throughout its distribution. Although pelvic reduction is caused by selection, expression of reduced pelvic phenotypes is constrained by development and other factors. However, lineages with pelvis reduction rapidly go extinct while lineages that retain the fully formed pelvic girdle tend to persist. Existence of pelvic reduction since the Miocene has depended on an equilibrium between divergence and extinction. The phylogenetic topology resulting from this process differs greatly from the conventional view of evolutionary history, and could only be recognized by analysis of both extant populations and fossil material. If this phylogenetic topology is common, it may help to account for the different perceptions that population biologists and paleobiologists have of evolutionary tempo. Copyright © 1988. Published by Elsevier Ltd.

On the rarity of X-ray binaries with Wolf-Rayet donors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Linden, T.; Valsecchi, F.; Kalogera, V.

The paucity of High mass X-Ray binaries (HMXB) consisting of a neutron star (NS) accretor and Wolf-Rayet (WR) donor has long been at odds with expectations from population synthesis studies indicating that these systems should survive as the evolved offspring of the observed HMXB population. This tension is particularly troubling in light of recent observations uncovering a preponderance of HMXBs containing loosely bound Be donors which would be expected to naturally evolve into WR-HMXBs. Reconciling the unexpectedly large population of Be-HMXBs with the lack of observed WR-HMXB sources thus serves to isolate the dynamics of CE physics from other binarymore » evolution parameters. We find that binary mergers during CE events must be common in order to resolve tension between these observed populations. Furthermore, future observations which better constrain the background population of loosely bound O/B-NS binaries are likely to place significant constraints on the efficiency of CE removal.« less

Yarkovsky footprints in the Eos family

NASA Astrophysics Data System (ADS)

Vokrouhlický, D.; Brož, M.; Morbidelli, A.; Bottke, W. F.; Nesvorný, D.; Lazzaro, D.; Rivkin, A. S.

2006-05-01

The Eos asteroid family is the third most populous, after Themis and Koronis, and one of the largest non-random groups of asteroids in the main belt. It has been known and studied for decades, but its structure and history still presented difficulties to understand. We first revise the Eos family identification as a statistical cluster in the space of proper elements. Using the most to-date catalogue of proper elements we determine a nominal Eos family, defined by us using the hierarchical-clustering method with the cut-off velocity of 55 m/s, contains some 4400 members. This unforeseen increase in known Eos asteroids allows us to perform a much more detailed study than was possible so far. We show, in particular, that most of the previously thought peculiar features are explained within the following model: (i) collisional disruption of the parent body leads to formation of a compact family in the proper element space (with characteristic escape velocities of the observed asteroids of tens of meters per second, compatible with hydrocode simulations), and (ii) as time goes, the family dynamically evolves due to a combination of the thermal effects and planetary perturbations. This model allows us to explain sharp termination of the family at the J7/3 mean motion resonance with Jupiter, uneven distribution of family members about the J9/4 mean motion resonance with Jupiter, semimajor axis distribution of large vs small members in the family and anomalous residence of Eos members inside the high-order secular resonance z. Our dynamical method also allows us to estimate Eos family age to 1.3-0.2+0.15 Gyr. Several formal members of the Eos family are in conflict with our model and these are suspected interlopers. We use spectroscopic observations, whose results are also reported here, and results of 5-color wide-band Sloan Digital Sky Survey photometry to prove some of them are indeed spectrally incompatible with the family.

Charnockites and granites of the western Adirondacks, New York, USA: a differentiated A-type suite

USGS Publications Warehouse

Whitney, P.R.

1992-01-01

Granitic rocks in the west-central Adirondack Highlands of New York State include both relatively homogeneous charnockitic and hornblende granitic gneisses (CG), that occur in thick stratiform bodies and elliptical domes, and heterogeneous leucogneisses (LG), that commonly are interlayered with metasedimentary rocks. Major- and trace-element geochemical analyses were obtained for 115 samples, including both types of granitoids. Data for CG fail to show the presence of more than one distinct group based on composition. Most of the variance within the CG sample population is consistent with magmatic differentiation combined with incomplete separation of early crystals of alkali feldspar, plagioclase, and pyroxenes or amphibole from the residual liquid. Ti, Fe, Mg, Ca, P, Sr, Ba, and Zr decrease with increasing silica, while Rb and K increase. Within CG, the distinction between charnockitic (orthopyroxene-bearing) and granitic gneisses is correlated with bulk chemistry. The charnockites are consistently more mafic than the hornblende granitic gneisses, although forming a continuum with them. The leucogneisses, while generally more felsic than the charnockites and granitic gneisses, are otherwise geochemically similar to them. The data are consistent with the LG suite being an evolved extrusive equivalent of the intrusive CG suite. Both CG and LG suites are metaluminous to mildly peraluminous and display an A-type geochemical signature, enriched in Fe, K, Ce, Y, Nb, Zr, and Ga and depleted in Ca, Mg, and Sr relative to I- and S-type granites. Rare earth element patterns show moderate LREE enrichment and a negative Eu anomaly throughout the suite. The geochemical data suggest an origin by partial melting of biotite- and plagioclase-rich crustal rocks. Emplacement occurred in an anorogenic or post-collisional tectonic setting, probably at relatively shallow depths. Deformation and granulite-facies metamorphism with some partial melting followed during the Ottawan phase of the Grenville Orogeny, yielding the present migmatitic granitic and charnockitic gneisses. ?? 1992.

Runaway electron production in DIII-D killer pellet experiments, calculated with the CQL3D/KPRAD model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harvey, R. W.; Chan, V. S.; Chiu, S. C.

2000-11-01

Runaway electrons are calculated to be produced during the rapid plasma cooling resulting from ''killer pellet'' injection experiments, in general agreement with observations in the DIII-D [J. L. Luxon , Plasma Physics and Controlled Nuclear Fusion Research 1986 (International Atomic Energy Agency, Vienna, 1987), Vol. I, p. 159] tokamak. The time-dependent dynamics of the kinetic runaway distributions are obtained with the CQL3D [R. W. Harvey and M. G. McCoy, ''The CQL3D Code,'' in Proceedings of the IAEA Technical Committee Meeting on Numerical Modeling, Montreal, 1992 (International Atomic Energy Agency, Vienna, 1992), p. 489] collisional Fokker--Planck code, including the effect ofmore » small and large angle collisions and stochastic magnetic field transport losses. The background density, temperature, and Z{sub eff} are evolved according to the KPRAD [D. G. Whyte and T. E. Evans , in Proceedings of the 24th European Conference on Controlled Fusion and Plasma Physics, Berchtesgaden, Germany (European Physical Society, Petit-Lancy, 1997), Vol. 21A, p. 1137] deposition and radiation model of pellet--plasma interactions. Three distinct runway mechanisms are apparent: (1) prompt ''hot-tail runaways'' due to the residual hot electron tail remaining from the pre-cooling phase, (2) ''knock-on'' runaways produced by large-angle Coulomb collisions on existing high energy electrons, and (3) Dreicer ''drizzle'' runaway electrons due to diffusion of electrons up to the critical velocity for electron runaway. For electron densities below {approx}1x10{sup 15}cm{sup -3}, the hot-tail runaways dominate the early time evolution, and provide the seed population for late time knock-on runaway avalanche. For small enough stochastic magnetic field transport losses, the knock-on production of electrons balances the losses at late times. For losses due to radial magnetic field perturbations in excess of {approx}0.1% of the background field, i.e., {delta}B{sub r}/B{>=}0.001, the losses prevent late-time electron runaway.« less

Activation of the cryptic PhnE permease promotes rapid adaptive evolution in a population of Escherichia coli K-12 starved for phosphate.

PubMed

Guillemet, Mélanie L; Moreau, Patrice L

2012-01-01

Escherichia coli K-12 suffers acetic acid stress during prolonged incubation in glucose minimal medium containing a limiting concentration of inorganic phosphate (0.1 mM P(i)), which decreases the number of viable cells from 6 × 10(8) to ≤10 CFU/ml between days 6 and 14 of incubation. Here we show that following two serial transfers into P(i)-limiting medium, evolved mutants survived prolonged incubation (≈10(7) CFU/ml on day 14 of incubation). The evolved strains that overtook the populations were generally PhnE(+), whereas the ancestral K-12 strain carries an inactive phnE allele, which prevents the transport of phosphonates. The switching in phnE occurred with a high frequency as a result of the deletion of an 8-bp repeated sequence. In a mixed culture starved for P(i) that contained the K-12 ancestral strain in majority, evolved strains grew through PhnE-dependent scavenging of probably organic phosphate esters (not phosphonates or P(i)) released by E. coli K-12 between days 1 and 3, before acetic acid excreted by E. coli K-12 reached toxic levels. The growth yield of phnE(+) strains in mixed culture was dramatically enhanced by mutations that affect glucose metabolism, such as an rpoS mutation inactivating the alternative sigma factor RpoS. The long-term viability of evolved populations was generally higher when the ancestral strain carried an inactive rather than an active phnE allele, which indicates that cross-feeding of phosphorylated products as a result of the phnE polymorphism may be essential for the spread of mutants which eventually help populations to survive under P(i) starvation conditions.

Ecological speciation in an island snail: evidence for the parallel evolution of a novel ecotype and maintenance by ecologically dependent postzygotic isolation.

PubMed

Stankowski, Sean

2013-05-01

Speciation is the process by which reproductive isolation evolves between populations. Two general models of speciation have been proposed: ecological speciation, where reproductive barriers evolve due to ecologically based divergent selection, and mutation-order speciation, where populations fix different mutations as they adapt to similar selection pressures. I evaluate these alternative models and determine the progress of speciation in a diverse group of land snails, genus Rhagada, inhabiting Rosemary Island. A recently derived keeled-flat morphotype occupies two isolated rocky hills, while globose-shelled snails inhabit the surrounding plains. The study of one hill reveals that they are separated by a narrow hybrid zone. As predicted by ecological speciation theory, there are local and landscape level associations between shell shape and habitat, and the morphological transition coincides with a narrow ecotone between the two distinct environments. Microsatellite DNA revealed a cline of hybrid index scores much wider than the morphological cline, further supporting the ecological maintenance of the morphotypes. The hybrid zone does not run through an area of low population density, as is expected for mutation-order hybrid zones, and there is a unimodal distribution of phenotypes at the centre, suggesting that there is little or no prezygotic isolation. Instead, these data suggest that the ecotypes are maintained by ecologically dependent postzygotic isolation (i.e. ecological selection against hybrids). Mitochondrial and Microsatellite DNA indicate that the keeled-flat form evolved recently, and without major historical disruptions to gene flow. The data also suggest that the two keeled-flat populations, inhabiting similar rocky hills, have evolved in parallel. These snails provide a complex example of ecological speciation in its early stages. © 2013 Blackwell Publishing Ltd.

Relativistic high-current electron-beam stopping-power characterization in solids and plasmas: collisional versus resistive effects.

PubMed

Vauzour, B; Santos, J J; Debayle, A; Hulin, S; Schlenvoigt, H-P; Vaisseau, X; Batani, D; Baton, S D; Honrubia, J J; Nicolaï, Ph; Beg, F N; Benocci, R; Chawla, S; Coury, M; Dorchies, F; Fourment, C; d'Humières, E; Jarrot, L C; McKenna, P; Rhee, Y J; Tikhonchuk, V T; Volpe, L; Yahia, V

2012-12-21

We present experimental and numerical results on intense-laser-pulse-produced fast electron beams transport through aluminum samples, either solid or compressed and heated by laser-induced planar shock propagation. Thanks to absolute K(α) yield measurements and its very good agreement with results from numerical simulations, we quantify the collisional and resistive fast electron stopping powers: for electron current densities of ≈ 8 × 10(10) A/cm(2) they reach 1.5 keV/μm and 0.8 keV/μm, respectively. For higher current densities up to 10(12)A/cm(2), numerical simulations show resistive and collisional energy losses at comparable levels. Analytical estimations predict the resistive stopping power will be kept on the level of 1 keV/μm for electron current densities of 10(14)A/cm(2), representative of the full-scale conditions in the fast ignition of inertially confined fusion targets.

Constraining Solar Wind Heating Processes by Kinetic Properties of Heavy Ions

NASA Astrophysics Data System (ADS)

Tracy, Patrick J.; Kasper, Justin C.; Raines, Jim M.; Shearer, Paul; Gilbert, Jason A.; Zurbuchen, Thomas H.

2016-06-01

We analyze the heavy ion components (A >4 amu ) in collisionally young solar wind plasma and show that there is a clear, stable dependence of temperature on mass, probably reflecting the conditions in the solar corona. We consider both linear and power law forms for the dependence and find that a simple linear fit of the form Ti/Tp=(1.35 ±.02 )mi/mp describes the observations twice as well as the equivalent best fit power law of the form Ti/Tp=(mi/mp) 1.07 ±.01 . Most importantly we find that current model predictions based on turbulent transport and kinetic dissipation are in agreement with observed nonthermal heating in intermediate collisional age plasma for m /q <3.5 , but are not in quantitative or qualitative agreement with the lowest collisional age results. These dependencies provide new constraints on the physics of ion heating in multispecies plasmas, along with predictions to be tested by the upcoming Solar Probe Plus and Solar Orbiter missions to the near-Sun environment.

Properties of Highly Rotationally Excited H2 in Photodissociation Regions

NASA Astrophysics Data System (ADS)

Cummings, Sally Jane; Wan, Yier; Stancil, Phillip C.; Yang, Benhui H.; Zhang, Ziwei

2018-06-01

H2 is the dominant molecular species in the vast majority of interstellar environments and it plays a crucial role as a radiative coolant. In photodissociation regions, it is one of the primary emitters in the near to mid-infrared which are due to lines originating from highly excited rotational levels. However, collisional data for rotational levels j>10 are sparse, particularly for H2-H2 collisions. Utilizing new calculations for para-H2 and ortho-H2 collisional rate coefficients with H2 for j as high as 30, we investigate the effects of the new results in standard PDR models with the spectral simulation package Cloudy. We also perform Cloudy models of the Orion Bar and use Radex to explore rotational line ratio diagnostics. The resulting dataset of H2 collisional data should find wide application to other molecular environments. This work was support by Hubble Space Telescope grant HST-AR-13899.001-A and NASA grants NNX15AI61G and NNX16AF09G.

Optimal electric potential profile in a collisional magnetized thruster

NASA Astrophysics Data System (ADS)

Fruchtman, Amnon; Makrinich, Gennady

2016-10-01

A major figure of merit in propulsion in general and in electric propulsion in particular is the thrust per unit of deposited power, the ratio of thrust over power. We have recently demonstrated experimentally and theoretically that for a fixed deposited power in the ions, the momentum delivered by the electric force is larger if the accelerated ions collide with neutrals during the acceleration. As expected, the higher thrust for given power is achieved for a collisional plasma at the expense of a lower thrust per unit mass flow rate. Operation in the collisional regime can be advantageous for certain space missions. We analyze a Hall thruster configuration in which the flow is only weakly ionized but there are frequent ion-neutral collisions. With a variational method we seek an electric potential profile that maximizes thrust over power. We then examine what radial magnetic field profile should determine such a potential profile. Supported by the Israel Science Foundation Grant 765/11.

Collisional perturbation of radio-frequency E1 transitions in an atomic beam of dysprosium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cingoez, A.; Lapierre, Alain; Nguyen, A.-T.

2005-12-15

We have studied collisional perturbations of radio-frequency (rf) electric-dipole (E1) transitions between the nearly degenerate opposite-parity levels in atomic dysprosium (Dy) in the presence of 10 to 80 {mu}Torr of H{sub 2}, N{sub 2}, He, Ar, Ne, Kr, and Xe. Collisional broadening and shift of the resonance, as well as the attenuation of the signal amplitude are observed to be proportional to the foreign-gas density with the exception of H{sub 2} and Ne, for which no shifts were observed. Corresponding rates and cross sections are presented. In addition, rates and cross sections for O{sub 2} are extracted from measurements usingmore » air as foreign gas. The primary motivation for this study is the need for accurate determination of the shift rates, which are needed in a laboratory search for the temporal variation of the fine-structure constant [A. T. Nguyen, D. Budker, S. K. Lamoreaux, and J. R. Torgerson, Phys. Rev. A 69, 22105 (2004)].« less

Solar-Wind Observations of Collisional Thermalization among Multiple Ion-Species

NASA Astrophysics Data System (ADS)

Maruca, B.; Qudzi, R.; Hellinger, P.; Stevens, M. L.; Kasper, J. C.; Korreck, K. E.

2017-12-01

The rate of Coulomb collisions among ions in the solar wind is low enough that significant departures from thermal equilibrium (e.g., different ion species having different temperatures) are frequently observed. Nevertheless, collisions have been found to play an important role in the plasma's large-scale evolution as it expands from the corona and through the heliosphere. Many statistical analyses have found that the temperature ratio of the two most abundant ions, protons (ionized hydrogen) and alpha-particles (fully ionized helium), is heavily influenced by collisional thermalization. This ongoing study expands on this work by including oxygen +6, which, during select periods (of cold, slow, dense plasma), the Wind spacecraft's Faraday Cups can measure at high cadences. Using well-established models of collisional relaxation, the in-situ measurements at 1 AU can be used to estimate ion conditions earlier in the plasma's expansion history. Assessing the physicality of these predictions can indicate to what degree preferential heating and/or heating beyond the corona affected the plasma's evolution.

Nonlinear Gyro-Landau-Fluid Equations

NASA Astrophysics Data System (ADS)

Raskolnikov, I.; Mattor, Nathan; Parker, Scott E.

1996-11-01

We present fluid equations which describe the effects of both linear and nonlinear Landau damping (wave-particle-wave effects). These are derived using a recently developed analytical method similar to renormalization group theory. (Scott E. Parker and Daniele Carati, Phys. Rev. Lett. 75), 441 (1995). In this technique, the phase space structure inherent in Landau damping is treated analytically by building a ``renormalized collisionality'' onto a bare collisionality (which may be taken as vanishingly small). Here we apply this technique to the nonlinear ion gyrokinetic equation in slab geometry, obtaining nonlinear fluid equations for density, parallel momentum and heat. Wave-particle resonances are described by two functions appearing in the heat equation: a renormalized ``collisionality'' and a renormalized nonlinear coupling coeffient. It will be shown that these new equations may correct a deficiency in existing gyrofluid equations, (G. W. Hammett and F. W. Perkins, Phys. Rev. Lett. 64,) 3019 (1990). which can severely underestimate the strength of nonlinear interaction in regimes where linear resonance is strong. (N. Mattor, Phys. Fluids B 4,) 3952 (1992).

Collisional tests and an extension of the TEMPEST continuum gyrokinetic code

NASA Astrophysics Data System (ADS)

Cohen, R. H.; Dorr, M.; Hittinger, J.; Kerbel, G.; Nevins, W. M.; Rognlien, T.; Xiong, Z.; Xu, X. Q.

2006-04-01

An important requirement of a kinetic code for edge plasmas is the ability to accurately treat the effect of colllisions over a broad range of collisionalities. To test the interaction of collisions and parallel streaming, TEMPEST has been compared with published analytic and numerical (Monte Carlo, bounce-averaged Fokker-Planck) results for endloss of particles confined by combined electrostatic and magnetic wells. Good agreement is found over a wide range of collisionality, confining potential and mirror ratio, and the required velocity space resolution is modest. We also describe progress toward extension of (4-dimensional) TEMPEST into a ``kinetic edge transport code'' (a kinetic counterpart of UEDGE). The extension includes averaging of the gyrokinetic equations over fast timescales and approximating the averaged quadratic terms by diffusion terms which respect the boundaries of inaccessable regions in phase space. F. Najmabadi, R.W. Conn and R.H. Cohen, Nucl. Fusion 24, 75 (1984); T.D. Rognlien and T.A. Cutler, Nucl. Fusion 20, 1003 (1980).

Reduction of collisional-radiative models for transient, atomic plasmas

NASA Astrophysics Data System (ADS)

Abrantes, Richard June; Karagozian, Ann; Bilyeu, David; Le, Hai

2017-10-01

Interactions between plasmas and any radiation field, whether by lasers or plasma emissions, introduce many computational challenges. One of these computational challenges involves resolving the atomic physics, which can influence other physical phenomena in the radiated system. In this work, a collisional-radiative (CR) model with reduction capabilities is developed to capture the atomic physics at a reduced computational cost. Although the model is made with any element in mind, the model is currently supplemented by LANL's argon database, which includes the relevant collisional and radiative processes for all of the ionic stages. Using the detailed data set as the true solution, reduction mechanisms in the form of Boltzmann grouping, uniform grouping, and quasi-steady-state (QSS), are implemented to compare against the true solution. Effects on the transient plasma stemming from the grouping methods are compared. Distribution A: Approved for public release; unlimited distribution, PA (Public Affairs) Clearance Number 17449. This work was supported by the Air Force Office of Scientific Research (AFOSR), Grant Number 17RQCOR463 (Dr. Jason Marshall).

Evolution of Resistance to Quorum Quenching in Digital Organisms

PubMed Central

Beckmann, Benjamin E.; Knoester, David B.; Connelly, Brian D.; Waters, Christopher M.

2014-01-01

Quorum sensing (QS) is a collective behavior whereby actions of individuals depend on the density of the surrounding population. Bacteria use QS to trigger secretion of digestive enzymes, formation and destruction of biofilms, and, in the case of pathogenic organisms, expression of virulence factors that cause disease. Investigations of mechanisms that prevent or disrupt QS, referred to as quorum quenching, are of interest because they provide a new alternative to antibiotics for treating bacterial infections. Traditional antibiotics either kill bacteria or inhibit their growth, producing selective pressures that promote resistant strains. In contrast, quorum quenching and other so-called anti-infective strategies focus on altering behavior. In this article we evolve QS in populations of digital organisms, a type of self-replicating computer program, and investigate the effects of quorum quenching on these populations. Specifically, we injected the populations with mutant organisms that were impaired in selected ways to disrupt the QS process. The experimental results indicate that the rate at which these mutants are introduced into a population influences both the evolvability of QS and the persistence of an existing QS behavior. Surprisingly, we also observed resistance to quorum quenching. Effectively, populations evolved resistance by reaching quorum at lower cell densities than did the parent strain. Moreover, the level of resistance was highest when the rate of mutant introduction increased over time. These results show that digital organisms can serve as a model to study the evolution and disruption of QS, potentially informing wet-lab studies aimed at identifying targets for anti-infective development. PMID:22662911

Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature.

PubMed

Ghalambor, Cameron K; Hoke, Kim L; Ruell, Emily W; Fischer, Eva K; Reznick, David N; Hughes, Kimberly A

2015-09-17

Phenotypic plasticity is the capacity for an individual genotype to produce different phenotypes in response to environmental variation. Most traits are plastic, but the degree to which plasticity is adaptive or non-adaptive depends on whether environmentally induced phenotypes are closer or further away from the local optimum. Existing theories make conflicting predictions about whether plasticity constrains or facilitates adaptive evolution. Debate persists because few empirical studies have tested the relationship between initial plasticity and subsequent adaptive evolution in natural populations. Here we show that the direction of plasticity in gene expression is generally opposite to the direction of adaptive evolution. We experimentally transplanted Trinidadian guppies (Poecilia reticulata) adapted to living with cichlid predators to cichlid-free streams, and tested for evolutionary divergence in brain gene expression patterns after three to four generations. We find 135 transcripts that evolved parallel changes in expression within the replicated introduction populations. These changes are in the same direction exhibited in a native cichlid-free population, suggesting rapid adaptive evolution. We find 89% of these transcripts exhibited non-adaptive plastic changes in expression when the source population was reared in the absence of predators, as they are in the opposite direction to the evolved changes. By contrast, the remaining transcripts exhibiting adaptive plasticity show reduced population divergence. Furthermore, the most plastic transcripts in the source population evolved reduced plasticity in the introduction populations, suggesting strong selection against non-adaptive plasticity. These results support models predicting that adaptive plasticity constrains evolution, whereas non-adaptive plasticity potentiates evolution by increasing the strength of directional selection. The role of non-adaptive plasticity in evolution has received relatively little attention; however, our results suggest that it may be an important mechanism that predicts evolutionary responses to new environments.

Field-evolved resistance to insecticides in the invasive western flower thrips Frankliniella occidentalis (Pergande) (Thysanoptera: Thripidae) in China.

PubMed

Wang, Ze-Hua; Gong, Ya-Jun; Jin, Gui-Hua; Li, Bing-Yan; Chen, Jin-Cui; Kang, Zong-Jiang; Zhu, Liang; Gao, Yu-Lin; Reitz, Stuart; Wei, Shu-Jun

2016-07-01

To understand the current status of insecticide resistance of the invasive western flower thrips, Frankliniella occidentalis, in China, the responses of six field populations to six commonly used insecticides, i.e. spinosad, spinetoram, cyantraniliprole, imidacloprid, acetamiprid and pyriproxyfen, were evaluated in comparison with a susceptible laboratory strain. Field populations tended to be less susceptible than the laboratory strain. The population from Shouguang, Shandong Province, showed the lowest levels of susceptibility. A 15.64-fold and 17.29-fold resistance to spinosad and spinetoram was detected in the Shouguang population. A 11.74-fold and 13.64-fold resistance to cyantraniliprole was detected in populations from Daxing in the Beijing area and Shouguang. All populations showed a low level of resistance to imidacloprid, acetamiprid and pyriproxyfen, except for the Shouguang population, which was 127.58-fold more resistant to pyriproxyfen. Variations in resistance to the tested insecticides were observed among the sampled population. Spinosad and spinetoram were the most efficient insecticides and are recommended for use in an integrated management programme. Resistance management strategies should be implemented to reduce the potential for resistance evolving. © 2015 Society of Chemical Industry. © 2015 Society of Chemical Industry.

Genetic constraints predict evolutionary divergence in Dalechampia blossoms

PubMed Central

Bolstad, Geir H.; Hansen, Thomas F.; Pélabon, Christophe; Falahati-Anbaran, Mohsen; Pérez-Barrales, Rocío; Armbruster, W. Scott

2014-01-01

If genetic constraints are important, then rates and direction of evolution should be related to trait evolvability. Here we use recently developed measures of evolvability to test the genetic constraint hypothesis with quantitative genetic data on floral morphology from the Neotropical vine Dalechampia scandens (Euphorbiaceae). These measures were compared against rates of evolution and patterns of divergence among 24 populations in two species in the D. scandens species complex. We found clear evidence for genetic constraints, particularly among traits that were tightly phenotypically integrated. This relationship between evolvability and evolutionary divergence is puzzling, because the estimated evolvabilities seem too large to constitute real constraints. We suggest that this paradox can be explained by a combination of weak stabilizing selection around moving adaptive optima and small realized evolvabilities relative to the observed additive genetic variance. PMID:25002700

The effects of stabilizing and directional selection on phenotypic and genotypic variation in a population of RNA enzymes.

PubMed

Hayden, Eric J; Bratulic, Sinisa; Koenig, Iwo; Ferrada, Evandro; Wagner, Andreas

2014-02-01

The distribution of variation in a quantitative trait and its underlying distribution of genotypic diversity can both be shaped by stabilizing and directional selection. Understanding either distribution is important, because it determines a population's response to natural selection. Unfortunately, existing theory makes conflicting predictions about how selection shapes these distributions, and very little pertinent experimental evidence exists. Here we study a simple genetic system, an evolving RNA enzyme (ribozyme) in which a combination of high throughput genotyping and measurement of a biochemical phenotype allow us to address this question. We show that directional selection, compared to stabilizing selection, increases the genotypic diversity of an evolving ribozyme population. In contrast, it leaves the variance in the phenotypic trait unchanged.

SELECTIVE ADVANTAGE OF RECOMBINATION IN EVOLVING PROTEIN POPULATIONS: A LATTICE MODEL STUDY

PubMed Central

WILLIAMS, PAUL D.; POLLOCK, DAVID D.

2010-01-01

Recent research has attempted to clarify the contributions of several mutational processes, such as substitutions or homologous recombination. Simplistic, tractable protein models, which determine the compact native structure phenotype from the sequence genotype, are well-suited to such studies. In this paper, we use a lattice-protein model to examine the effects of point mutation and homologous recombination on evolving populations of proteins. We find that while the majority of mutation and recombination events are neutral or deleterious, recombination is far more likely to be beneficial. This results in a faster increase in fitness during evolution, although the final fitness level is not significantly changed. This transient advantage provides an evolutionary advantage to subpopulations that undergo recombination, allowing fixation of recombination to occur in the population. PMID:25473139

Reduced swimming performance repeatedly evolves upon loss of migration in landlocked populations of Alewife

USGS Publications Warehouse

Velotta, Jonathan P.; McCormick, Stephen; Jones, Andrew W.; Schultz, Eric T.

2018-01-01

Whole-organism performance tasks are accomplished by the integration of morphological traits and physiological functions. Understanding how evolutionary change in morphology and physiology influences whole-organism performance will yield insight into the factors that shape its own evolution. We demonstrate that nonmigratory populations of alewife (Alosa pseudoharengus) have evolved reduced swimming performance in parallel, compared with their migratory ancestor. In contrast to theoretically and empirically based predictions, poor swimming among nonmigratory populations is unrelated to the evolution of osmoregulation and occurs despite the fact that nonmigratory alewives have a more fusiform (torpedo-like) body shape than their ancestor. Our results suggest that elimination of long-distance migration from the life cycle has shaped performance more than changes in body shape and physiological regulatory capacity.

Selective Advantage of Recombination in Evolving Protein Populations:. a Lattice Model Study

NASA Astrophysics Data System (ADS)

Williams, Paul D.; Pollock, David D.; Goldstein, Richard A.

Recent research has attempted to clarify the contributions of several mutational processes, such as substitutions or homologous recombination. Simplistic, tractable protein models, which determine the compact native structure phenotype from the sequence genotype, are well-suited to such studies. In this paper, we use a lattice-protein model to examine the effects of point mutation and homologous recombination on evolving populations of proteins. We find that while the majority of mutation and recombination events are neutral or deleterious, recombination is far more likely to be beneficial. This results in a faster increase in fitness during evolution, although the final fitness level is not significantly changed. This transient advantage provides an evolutionary advantage to subpopulations that undergo recombination, allowing fixation of recombination to occur in the population.

Exploring the universe through discovery science on NIF

NASA Astrophysics Data System (ADS)

Remington, Bruce

2016-10-01

New regimes of science are being experimentally studied at high energy density facilities around the world, spanning drive energies from microjoules to megajoules, and time scales from femtoseconds to microseconds. The ability to shock and ramp compress samples to very high pressures and densities allows new states of matter relevant to planetary and stellar interiors to be studied. Shock driven hydrodynamic instabilities evolving into turbulent flows relevant to the dynamics of exploding stars (such as supernovae), accreting compact objects (such as white dwarfs, neutron stars, and black holes), and planetary formation dynamics are being probed. The dynamics of magnetized plasmas relevant to astrophysics, both in collisional and collisionless systems, are starting to be studied. High temperature, high velocity interacting flows are being probed for evidence of astrophysical collisionless shock formation, the turbulent magnetic dynamo effect, magnetic reconnection, and particle acceleration. And new results from thermonuclear reactions in hot dense plasmas relevant to stellar and big bang nucleosynthesis are starting to emerge. A selection of examples providing a compelling vision for frontier science on NIF in the coming decade will be presented. This work was performed under the auspices of U.S. DOE by LLNL under Contract DE-AC52-07NA27344.

Exploring the universe through Discovery Science on NIF

NASA Astrophysics Data System (ADS)

Remington, Bruce

2017-10-01

New regimes of science are being experimentally studied at high energy density facilities around the world, spanning drive energies from microjoules to megajoules, and time scales from femtoseconds to microseconds. The ability to shock and ramp compress samples to very high pressures and densities allows new states of matter relevant to planetary and stellar interiors to be studied. Shock driven hydrodynamic instabilities evolving into turbulent flows relevant to the dynamics of exploding stars (such as supernovae), accreting compact objects (such as white dwarfs, neutron stars, and black holes), and planetary formation dynamics (relevant to the exoplanets) are being probed. The dynamics of magnetized plasmas relevant to astrophysics, both in collisional and collisionless systems, are starting to be studied. High temperature, high velocity interacting flows are being probed for evidence of astrophysical collisionless shock formation, the turbulent magnetic dynamo effect, magnetic reconnection, and particle acceleration. And new results from thermonuclear reactions in hot dense plasmas relevant to stellar and big bang nucleosynthesis are starting to emerge. A selection of examples of frontier research through NIF Discovery Science in the coming decade will be presented. This work was performed under the auspices of U.S. DOE by LLNL under Contract DE-AC52-07NA27344.

A nonlocal fluid closure for antiparallel reconnection

NASA Astrophysics Data System (ADS)

Ng, J.; Hakim, A.; Bhattacharjee, A.

2016-12-01

The integration of kinetic effects in fluid models is an important problem in global simulations of the Earth's magnetosphere and space weather modelling. In particular, it has been shown that ion kinetics play an important role in the dynamics of large reconnecting systems, and that fluid models can account of some of these effects[1,2] . Here we introduce a new fluid model and closure for collisionless magnetic reconnection and more general applications. Taking moments of the kinetic equation, we evolve the full pressure tensor for electrons and ions, which includes the off diagonal terms necessary for reconnection. Kinetic effects are recovered by using a nonlocal heat flux closure, which approximates linear Landau damping in the fluid framework [3]. Using the island coalescence problem as a test, we show how the nonlocal ion closure improves on the typical collisional closures used for ten-moment models and circumvents the need for a colllisional free parameter. Finally, we extend the closure to study guide-field reconnection and discuss the implementation of a twenty-moment model.[1] A. Stanier et al. Phys Rev Lett (2015)[2] J. Ng et al. Phys Plasmas (2015)[3] G. Hammett et al. Phys Rev Lett (1990)

Efficient simulation of pitch angle collisions in a 2+2-D Eulerian Vlasov code

NASA Astrophysics Data System (ADS)

Banks, Jeff; Berger, R.; Brunner, S.; Tran, T.

2014-10-01

Here we discuss pitch angle scattering collisions in the context of the Eulerian-based kinetic code LOKI that evolves the Vlasov-Poisson system in 2+2-dimensional phase space. The collision operator is discretized using 4th order accurate conservative finite-differencing. The treatment of the Vlasov operator in phase-space uses an approach based on a minimally diffuse, fourth-order-accurate discretization (Banks and Hittinger, IEEE T. Plasma Sci. 39, 2198). The overall scheme is therefore discretely conservative and controls unphysical oscillations. Some details of the numerical scheme will be presented, and the implementation on modern highly concurrent parallel computers will be discussed. We will present results of collisional effects on linear and non-linear Landau damping of electron plasma waves (EPWs). In addition we will present initial results showing the effect of collisions on the evolution of EPWs in two space dimensions. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344 and funded by the LDRD program at LLNL under project tracking code 12-ERD-061.

Collisional Processing of Olivine and Pyroxene in Cometary Dust

NASA Technical Reports Server (NTRS)

Lederer, S. M.; Cintala, M. J.; Olney, R. D.; Keller, L. P.; Nakamura-Messenger, K.; Zolensky, M.

2008-01-01

According to the nebular theory of solar-system formation, collisions between bodies occurred frequently early in the solar system s history and continue at a lower rate even today. Collisions have reworked the surface compositions and structures of cometary nuclei, though to an unknown degree. The majority of the collisional history of a typical Jupiter-family comet takes place while it resides in the Kuiper Belt. Impacts occur on the surfaces of small bodies over a large range of velocities by impactors of all sizes, but typical encounter speeds within the Kuiper Belt are 1.5 to 2.0 km/s[1]. Durda and Stern suggest that the interiors of most cometary nuclei with diameters <5 km have been heavily damaged by collisions [2]. They estimate that over a period of 3.5 Gy, a nucleus with a diameter of 2 km and an orbit between 35-45 AU will experience 90-300 collisions with objects greater than 8 m in diameter. In this same time interval, collisions between a typical Trans-Neptunian Object (TNO) 200 km in diameter and objects with d > 8 m would rework up to one-third of that TNO s surface. In fact, it has been proposed that most short-period comets from the Kuiper Belt (90%) are collisional fragments from larger TNOs - not primordial objects themselves [3] - and that most short-period comets from the Kuiper Belt will be collisionally processed both on their surfaces as well as in their interiors.

Shock Structure: Application to the heliospheric termination shock and an interstellar shock

NASA Astrophysics Data System (ADS)

Mostafavi, P.; Zank, G. P.

2017-12-01

The structure of parallel and perpendicular shocks is often mediated by energetic particles. Here we describe shock structure when mediated by energetic particle heat flux and viscosity. We present a general theoretical model of shock mediation, which is then applied to Voyager 2 observations of the heliospheric termination shock (HTS) and Voyage 1 observations of a shock in very local interstellar medium (VLISM). Voyager 2 observations showed that the downstream HTS flow remained supersonic with respect to the thermal gas [Richardson et al., 2008]. Thus the thermal gas remains cold through the HTS and does not provide the dissipation to account for the deceleration of the supersonic solar wind. We show that PUIs are the primary dissipation mechanism and gain most of the solar wind kinetic energy in crossing the HTS. The interstellar shock observed by Voyager 1 [Burlaga et al., 2013] was extremely broad and so far there no theoretical explanation has been provided that describes the VLISM shock structure. Using the Chandrasekhar function, we show that the VLISM is collisional with respect to the thermal plasma and that electron and proton collisional mean free paths are very small. Thus, thermal collisionality should determine the structure of VLISM shocks. PUIs outside the heliosphere are generated by secondary charge exchange and contribute a very small pressure. Since PUIs and the dissipation associated with them cannot mediate the shock observed in the VLISM, we suggest that the thickness of the shock observed in the VLISM is due to collisional thermal gas dissipation.

Genome-wide analysis of allele frequency change in sunflower crop-wild hybrid populations evolving under natural conditions

USDA-ARS?s Scientific Manuscript database

Hybridization is known to occur between cultivated and wild populations of numerous plant species. This represents a major mechanism by which a wild population’s genetic structure and evolutionary dynamics could be altered. Studying crop-derived alleles in wild populations is also relevant to assess...

Growth and decay of runaway electrons above the critical electric field under quiescent conditions

DOE PAGES

Paz-Soldan, Carlos; Eidietis, Nicholas W.; Granetz, Robert S.; ...

2014-02-27

Extremely low density operation free of error eld penetration supports the excitation of trace-level quiescent runaway electron (RE) populations during the at-top of DIII-D Ohmic discharges. Operation in the quiescent regime allows accurate measurement of all key parameters important to RE excitation, including the internal broadband magnetic fluctuation level. RE onset is characterized and found to be consistent with primary (Dreicer) generation rates. Impurity-free collisional suppression of the RE population is investigated by stepping the late-time main-ion density until RE decay is observed. The transition from growth to decay is found to occur 3-5 times above the theoretical critical electricmore » eld for avalanche growth and is thus indicative of anomalous RE loss. Lastly, this suggests that suppression of tokamak RE avalanches can be achieved at lower density than previously expected, though extrapolation requires predictive understanding of the RE loss mechanism and magnitude.« less

Electron beam-generated Ar/N{sub 2} plasmas: The effect of nitrogen addition on the brightest argon emission lines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lock, E. H., E-mail: evgeniya.lock@nrl.navy.mil, E-mail: scott.walton@nrl.navy.mil; Petrova, Tz. B.; Petrov, G. M.

2016-04-15

The effect of nitrogen addition on the emission intensities of the brightest argon lines produced in a low pressure argon/nitrogen electron beam-generated plasmas is characterized using optical emission spectroscopy. In particular, a decrease in the intensities of the 811.5 nm and 763.5 nm lines is observed, while the intensity of the 750.4 nm line remains unchanged as nitrogen is added. To explain this phenomenon, a non-equilibrium collisional-radiative model is developed and used to compute the population of argon excited states and line intensities as a function of gas composition. The results show that the addition of nitrogen to argon modifies the electron energymore » distribution function, reduces the electron temperature, and depopulates Ar metastables in exchange reactions with electrons and N{sub 2} molecules, all of which lead to changes in argon excited states population and thus the emission originating from the Ar 4p levels.« less

RAPID EVOLUTION CAUSED BY POLLINATOR LOSS IN MIMULUS GUTTATUS

PubMed Central

Bodbyl Roels, Sarah A.; Kelly, John K.

2018-01-01

Anthropogenic perturbations including habitat loss and emerging disease are changing pollinator communities and generating novel selection pressures on plant populations. Disruption of plant–pollinator relationships is predicted to cause plant mating system evolution, although this process has not been directly observed. This study demonstrates the immediate evolutionary effects of pollinator loss within experimental populations of a predominately outcrossing wildflower. Initially equivalent populations evolved for five generations within two pollination treatments: abundant bumblebee pollinators versus no pollinators. The populations without pollinators suffered greatly reduced fitness in early generations but rebounded as they evolved an improved ability to self-fertilize. All populations diverged in floral, developmental, and life-history traits, but only a subset of characters showed clear association with pollination treatment. Pronounced treatment effects were noted for anther–stigma separation and autogamous seed set. Dramatic allele frequency changes at two chromosomal polymorphisms occurred in the no pollinator populations, explaining a large fraction of divergence in pollen viability. The pattern of phenotypic and genetic changes in this experiment favors a sequential model for the evolution of the multitrait “selfing syndrome” observed throughout angiosperms. PMID:21884055

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data.

PubMed Central

Drummond, Alexei J; Nicholls, Geoff K; Rodrigo, Allen G; Solomon, Wiremu

2002-01-01

Molecular sequences obtained at different sampling times from populations of rapidly evolving pathogens and from ancient subfossil and fossil sources are increasingly available with modern sequencing technology. Here, we present a Bayesian statistical inference approach to the joint estimation of mutation rate and population size that incorporates the uncertainty in the genealogy of such temporally spaced sequences by using Markov chain Monte Carlo (MCMC) integration. The Kingman coalescent model is used to describe the time structure of the ancestral tree. We recover information about the unknown true ancestral coalescent tree, population size, and the overall mutation rate from temporally spaced data, that is, from nucleotide sequences gathered at different times, from different individuals, in an evolving haploid population. We briefly discuss the methodological implications and show what can be inferred, in various practically relevant states of prior knowledge. We develop extensions for exponentially growing population size and joint estimation of substitution model parameters. We illustrate some of the important features of this approach on a genealogy of HIV-1 envelope (env) partial sequences. PMID:12136032

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data.

PubMed

Drummond, Alexei J; Nicholls, Geoff K; Rodrigo, Allen G; Solomon, Wiremu

2002-07-01

Molecular sequences obtained at different sampling times from populations of rapidly evolving pathogens and from ancient subfossil and fossil sources are increasingly available with modern sequencing technology. Here, we present a Bayesian statistical inference approach to the joint estimation of mutation rate and population size that incorporates the uncertainty in the genealogy of such temporally spaced sequences by using Markov chain Monte Carlo (MCMC) integration. The Kingman coalescent model is used to describe the time structure of the ancestral tree. We recover information about the unknown true ancestral coalescent tree, population size, and the overall mutation rate from temporally spaced data, that is, from nucleotide sequences gathered at different times, from different individuals, in an evolving haploid population. We briefly discuss the methodological implications and show what can be inferred, in various practically relevant states of prior knowledge. We develop extensions for exponentially growing population size and joint estimation of substitution model parameters. We illustrate some of the important features of this approach on a genealogy of HIV-1 envelope (env) partial sequences.

Rapid evolution caused by pollinator loss in Mimulus guttatus.

PubMed

Roels, Sarah A Bodbyl; Kelly, John K

2011-09-01

Anthropogenic perturbations including habitat loss and emerging disease are changing pollinator communities and generating novel selection pressures on plant populations. Disruption of plant-pollinator relationships is predicted to cause plant mating system evolution, although this process has not been directly observed. This study demonstrates the immediate evolutionary effects of pollinator loss within experimental populations of a predominately outcrossing wildflower. Initially equivalent populations evolved for five generations within two pollination treatments: abundant bumblebee pollinators versus no pollinators. The populations without pollinators suffered greatly reduced fitness in early generations but rebounded as they evolved an improved ability to self-fertilize. All populations diverged in floral, developmental, and life-history traits, but only a subset of characters showed clear association with pollination treatment. Pronounced treatment effects were noted for anther-stigma separation and autogamous seed set. Dramatic allele frequency changes at two chromosomal polymorphisms occurred in the no pollinator populations, explaining a large fraction of divergence in pollen viability. The pattern of phenotypic and genetic changes in this experiment favors a sequential model for the evolution of the multitrait "selfing syndrome" observed throughout angiosperms. © 2011 The Author(s).

Far-infrared rotational emission by carbon monoxide

NASA Technical Reports Server (NTRS)

Mckee, C. F.; Storey, J. W. V.; Watson, D. M.; Green, S.

1981-01-01

Accurate theoretical collisional excitation rates are used to determine the emissivities of CO rotational lines 10 to the 4th power/cu cm n(H2), 100 K T 2000 K, and J 50. An approximate analytic expression for the emissitivities which is valid over most of this region is obtained. Population inversions in the lower rotational levels occur for densities n(H2) approximately 10 (to the 3rd to 5th power)/cu cm and temperatures T approximately 50 K. Interstellar shocks observed edge on are a potential source of millimeter wave CO maser emission. The CO rotational cooling function suggested by Hollenbach and McKee (1979) is verified, and accurate numerical values given. Application of these results to other linear molecules should be straightforward.

Dust in the Outer Solar System as measured by Cassini-CDA: KBOs, Centaurs and TNOs as parent bodies?

NASA Astrophysics Data System (ADS)

Altobelli, N.; Kempf, S.; Srama, R.

2017-09-01

We analyse 13 years of data acquired by the Cosmic Dust Analyser (CDA)-Entrance Grid (EG) subsystem on-board the Cassini spacecraft around Saturn. We confirm the presence of exogenous dust, originating from the interplanetary space and permanently crossing the Saturnian system. We analyse the range of possible heliocentric orbital elements in order to identify their possible origin. We observe particles whose dynamics is compatible with 'old' collisional debris from the Kuiper-Belt, migrating inward the Solar System under influence of the Poynting-Robertson drag, or relatively fresh grains from recently discovered cometary activity of Centaurs. A population of particles entering the Saturn's system with high velocities can be linked to Halley-type comets as parent bodies.

Standing Genetic Variation and the Evolution of Drug Resistance in HIV

PubMed Central

Pennings, Pleuni Simone

2012-01-01

Drug resistance remains a major problem for the treatment of HIV. Resistance can occur due to mutations that were present before treatment starts or due to mutations that occur during treatment. The relative importance of these two sources is unknown. Resistance can also be transmitted between patients, but this process is not considered in the current study. We study three different situations in which HIV drug resistance may evolve: starting triple-drug therapy, treatment with a single dose of nevirapine and interruption of treatment. For each of these three cases good data are available from literature, which allows us to estimate the probability that resistance evolves from standing genetic variation. Depending on the treatment we find probabilities of the evolution of drug resistance due to standing genetic variation between and . For patients who start triple-drug combination therapy, we find that drug resistance evolves from standing genetic variation in approximately 6% of the patients. We use a population-dynamic and population-genetic model to understand the observations and to estimate important evolutionary parameters under the assumption that treatment failure is caused by the fixation of a single drug resistance mutation. We find that both the effective population size of the virus before treatment, and the fitness of the resistant mutant during treatment, are key-parameters which determine the probability that resistance evolves from standing genetic variation. Importantly, clinical data indicate that both of these parameters can be manipulated by the kind of treatment that is used. PMID:22685388

Some aspects of the role of rift inheritance on Alpine-type orogens

NASA Astrophysics Data System (ADS)

Tugend, Julie; Manatschal, Gianreto; Mohn, Geoffroy; Chevrot, Sébastien

2017-04-01

Processes commonly recognized as fundamental for the formation of collisional orogens include oceanic subduction, arc-continent and continent-continent collision. As collisional belts result from the closure of oceanic basins and subsequent inversion of former rifted margins, their formation and evolution may also in theory be closely interlinked with the initial architecture of the former rifted margins. This assumption is indeed more likely to be applicable in the case of Alpine-type orogens, mainly controlled by mechanical processes and mostly devoid of arc-related magmatism. More and more studies from present-day magma-poor rifted margins illustrate the complex evolution of hyperextended domains (i.e. severely thinned continental crust (<10 km) and/or exhumed serpentinized mantle with relatively minor magmatic additions) between unequivocal continental and oceanic domains. In this contribution, we compare the deep structure of the Pyrenean and Alpine belts to discuss some aspects of the relative role of rift-inherited hyperextension and collisional processes in building Alpine-type orogens. The Pyrenees and Western to Central Alps respectively result from the inversion of a Late Jurassic to Mid Cretaceous and an Early to Middle Jurassic rift system eventually floored by hyperextended crust, exhumed mantle and/or proto-oceanic crust. In spite of uncertainties on the initial width of the hyperextended and proto-oceanic domains, the rift-related pre-collisional architecture of the Alps shows many similarities with that proposed for the Pyrenees. Remnants of these domains occur in the internal parts of both orogens, but they are largely affected by orogeny-related deformation and show a HP-LT to HT-MP metamorphic overprint in the Alps as a result of a polyphase deformation history. Yet, recent high-resolution tomographic images across the Pyrenees (PYROPE) and the Alps (CIFALPS) reveal a surprisingly comparable present-day overall crustal and lithospheric structure. Based on the comparison between the two orogens we discuss: (1) the nature and depth of decoupling levels inherited from hyperextension; (2) the implications for restorations and interpretations of orogenic roots (former hyperextended domains vs. lower crust only); and (3) the nature and major role of buttresses in controlling the final stage of collisional processes. Eventually, we discuss the variability of the role of rift-inheritance in building Alpine-type orogens. The Pyrenees seem to represent one extreme, where rift-inheritance is important at different stages of collisional processes. In contrast, in the Alps the role of rift-inheritance is subtler, likely because of its more complex and polyphase compressional deformation history.

Post-collisional magmatism in the Late Miocene Rodna-Bârgău district (East Carpathians, Romania): Geochemical constraints and petrogenetic models

NASA Astrophysics Data System (ADS)

Fedele, Lorenzo; Seghedi, Ioan; Chung, Sun-Lin; Laiena, Fabio; Lin, Te-Hsien; Morra, Vincenzo; Lustrino, Michele

2016-12-01

Post-collisional magmatism in the Late Miocene Rodna-Bârgău subvolcanic district (East Carpathians) gave rise to a wide variety of rock compositions, allowing recognition of four groups of calcalkaline rocks with distinctive petrography, mineral chemistry, whole-rock geochemistry and Sr-Nd-Hf isotope features. New U-Pb zircon datings, together with literature data, indicate that the emplacement of the four rock groups was basically contemporaneous in the 11.5-8 Ma time span. The low potassium group (LKG) includes the most abundant lithotypes of the area, ranging from basaltic andesite to dacite, characterized by K-poor tschermakitic amphibole, weak enrichment in LILE and LREE, relatively low 87Sr/86Sr, coupled with relatively high 143Nd/144Nd and 176Hf/177Hf. The high potassium group (HKG) includes amphibole-bearing microgabbro, amphibole andesite and amphibole- and biotite dacite, with K-richer magnesio-hastingsite to hastingsite amphibole, more marked enrichments in incompatible elements, higher 87Sr/86Sr and lower 143Nd/144Nd and 176Hf/177Hf. These two main rock groups seem to have originated from similar juxtaposed mantle sources, with the HKG possibly related to slightly more enriched domains (with higher H2O reflected by the higher modal amphibole) with respect to LKG (with higher plagioclase/amphibole ratios). The evolution of the two rock series involved also open-system processes, taking place mainly in the upper crust for the HKG, in the lower crust for LKG magmas. In addition, limited occurrences of generally younger strongly evolved peraluminous rhyolites and microgranites (Acid group) and sialic-dominated "leucocratic" andesites and dacites (LAD group) were also recognized to the opposite outermost areas of the district. These two latter rock groups were generated by the melting of a basic metamorphic crustal source (respectively in hydrous and anhydrous conditions), favored by the heat released by mantle melts from the adjoining central area. The peculiar distribution of the products of the four rock groups in well defined sectors argues for a strong control of the local crustal tectonic regime on magmatism, influenced by the change from a transpressional to trastensional stage.

Impact simulations on the rubble pile asteroid (2867) Steins

NASA Astrophysics Data System (ADS)

Deller, Jakob; Lowry, Stephen; Snodgrass, Colin; Price, Mark; Sierks, Holger

2015-04-01

Images from the OSIRIS camera system on board the Rosetta spacecraft (Keller et al. 2010) have revealed several interesting features on asteroid (2867) Steins. Its macro porosity of 40%, together with the shape that looks remarkably like a YORP evolved body, both indicate a rubble pile structure. A large crater on the southern pole is evidence for collisional evolution of this rubble pile asteroid. We have developed a new approach for simulating impacts on asteroid bodies that connects formation history to their collisional evolution. This is achieved by representing the interior as a 'rubble pile', created from the gravitational aggregation of spherical 'pebbles' that represent fragments from a major disruption event. These 'pebbles' follow a power-law size function and constitute the building blocks of the rubble pile. This allows us to explicitly model the interior of rubble pile asteroids in hyper-velocity impact simulations in a more realistic way. We present preliminary results of a study validating our approach in a large series of simulated impacts on a typical small main-belt rubble pile asteroid using the Smoothed Particle Hydrodynamics solver in LS-DYNA. We show that this approach allows us to explicitly follow the behavior of a single 'pebble', while preserving the expected properties of the bulk asteroid as known from observations and experiments (Holsapple 2009). On the example of Steins, we use this model to relate surface features like the northern hill at 75/100 degrees lon/lat distance to the largest crater (Jorda et al. 2012), or the catena of depletion pits, to the displacement of large fragments in the interior of the asteroid during the impact. We do this by following the movement of pebbles below the surface feature in simulations that recreate the shape of the impact crater. We show that while it is not straightforward to explain the formation of the hill-like structure, the formation of cracks possibly leading to depletion zones can be observed. References: Keller et al., 2010, Science, 327(5962), pp. 190-193; Jorda et al., 2012, Icarus, vol. 221 (2) pp. 1089-1100; Holsapple, 2009, PSS, 57(2), 127-141.

Impact Simulations on the Rubble Pile Asteroid (2867) Steins

NASA Astrophysics Data System (ADS)

Deller, Jakob; Snodgrass, Colin; Lowry, Stephen C.; Price, Mark C.; Sierks, Holger

2014-11-01

Images from the OSIRIS camera system on board the Rosetta spacecraft (Keller et al. 2010) has revealed several interesting features on asteroid (2867) Steins. Its macro porosity of 40%, together with the shape that looks remarkably like a YORP evolved body, both indicate a rubble pile structure. A large crater on the southern pole is evidence for collisional evolution of this rubble pile asteroid. We have developed a new approach for simulating impacts on asteroid bodies that connects formation history to their collisional evolution. This is achieved by representing the interior as a ‘rubble pile’, created from the gravitational aggregation of spherical ‘pebbles’ that represent fragments from a major disruption event. These ‘pebbles’ follow a power law size function and constitute the building blocks of the rubble pile. This allows us to explicitly model the interior of rubble pile asteroids in hyper-velocity impact simulations in a more realistic way. We present preliminary results of a study validating our approach in a large series of simulated impacts on a typical small main belt rubble pile asteroid using the Smoothed Particle Hydrodynamics solver in Autodyn. We show that this approach allows us to explicitly follow the behavior of a single ‘pebble’, while preserving the expected properties of the bulk asteroid as known from observations and experiments (Holsapple 2009). On the example of Steins, we use this model to investigate if surface features like the northern hill at 75/100 degrees lon/lat distance to the largest crater (Jorda et al. 2012), or the catena of depletion pits, can be explained by the displacement of large fragments in the interior of the asteroid during the impact. We do this by following the movement of pebbles below the surface feature in simulations that recreate the shape of the impact crater.Acknowledgements: Jakob Deller thanks the Planetary Science Institute for a Pierazzo International Student Travel Award that funds his attendance at this conference. References: Keller et al., 2010, Science, 327(5962), pp. 190-193 Jorda et al., 2012, Icarus, vol. 221 (2) pp. 1089-1100; Holsapple, 2009, PSS, 57(2), 127-141.

Sexual imprinting: what strategies should we expect to see in nature?

PubMed

Chaffee, Dalton W; Griffin, Hayes; Gilman, R Tucker

2013-12-01

Sexual imprinting occurs when juveniles learn mate preferences by observing the phenotypes of other members of their populations, and it is ubiquitous in nature. Imprinting strategies, that is which individuals and phenotypes are observed and how strong preferences become, vary among species. Imprinting can affect trait evolution and the probability of speciation, and different imprinting strategies are expected to have different effects. However, little is known about how and why different imprinting strategies evolve, or which strategies we should expect to see in nature. We used a mathematical model to study how the evolution of sexual imprinting depends on (1) imprinting costs and (2) the sex-specific fitness effects of the phenotype on which individuals imprint. We found that even small fixed costs prevent the evolution of sexual imprinting, but small relative costs do not. When imprinting does evolve, we identified the conditions under which females should evolve to imprint on their fathers, their mothers, or on other members of their populations. Our results provide testable hypotheses for empirical work and help to explain the conditions under which sexual imprinting might evolve to promote speciation. © 2013 The Author(s). Evolution © 2013 The Society for the Study of Evolution.