Science.gov

Sample records for common spatial origin

  1. Common origin of visible and dark universe

    SciTech Connect

    Gu Peihong; Sarkar, Utpal

    2010-02-01

    Dark matter, baryonic matter, and dark energy have different properties but contribute comparable energy density to the present Universe. We point out that they may have a common origin. As the dark energy has a scale far lower than all known scales in particle physics but very close to neutrino masses, while the excess matter over antimatter in the baryonic sector is probably related to the neutrino-mass generation, we unify the origin of the dark and visible universe in a variant of the seesaw model. In our model (i) the dark matter relic density is a dark matter asymmetry emerged simultaneously with the baryon asymmetry from leptogenesis; (ii) the dark energy is due to a pseudo-Nambu-Goldstone-Boson associated with the neutrino-mass generation.

  2. L1-norm-based common spatial patterns.

    PubMed

    Wang, Haixian; Tang, Qin; Zheng, Wenming

    2012-03-01

    Common spatial patterns (CSP) is a commonly used method of spatial filtering for multichannel electroencephalogram (EEG) signals. The formulation of the CSP criterion is based on variance using L2-norm, which implies that CSP is sensitive to outliers. In this paper, we propose a robust version of CSP, called CSP-L1, by maximizing the ratio of filtered dispersion of one class to the other class, both of which are formulated by using L1-norm rather than L2-norm. The spatial filters of CSP-L1 are obtained by introducing an iterative algorithm, which is easy to implement and is theoretically justified. CSP-L1 is robust to outliers. Experiment results on a toy example and datasets of BCI competitions demonstrate the efficacy of the proposed method. PMID:22147288

  3. A spatial interaction model with spatially structured origin and destination effects

    NASA Astrophysics Data System (ADS)

    LeSage, James P.; Llano, Carlos

    2013-07-01

    We introduce a Bayesian hierarchical regression model that extends the traditional least-squares regression model used to estimate gravity or spatial interaction relations involving origin-destination flows. Spatial interaction models attempt to explain variation in flows from n origin regions to n destination regions resulting in a sample of N = n 2 observations that reflect an n by n flow matrix converted to a vector. Explanatory variables typically include origin and destination characteristics as well as distance between each region and all other regions. Our extension introduces latent spatial effects parameters structured to follow a spatial autoregressive process. Individual effects parameters are included in the model to reflect latent or unobservable influences at work that are unique to each region treated as an origin and destination. That is, we estimate 2 n individual effects parameters using the sample of N = n 2 observations. We illustrate the method using a sample of commodity flows between 18 Spanish regions during the 2002 period.

  4. Filter bank common spatial patterns in mental workload estimation.

    PubMed

    Arvaneh, Mahnaz; Umilta, Alberto; Robertson, Ian H

    2015-01-01

    EEG-based workload estimation technology provides a real time means of assessing mental workload. Such technology can effectively enhance the performance of the human-machine interaction and the learning process. When designing workload estimation algorithms, a crucial signal processing component is the feature extraction step. Despite several studies on this field, the spatial properties of the EEG signals were mostly neglected. Since EEG inherently has a poor spacial resolution, features extracted individually from each EEG channel may not be sufficiently efficient. This problem becomes more pronounced when we use low-cost but convenient EEG sensors with limited stability which is the case in practical scenarios. To address this issue, in this paper, we introduce a filter bank common spatial patterns algorithm combined with a feature selection method to extract spatio-spectral features discriminating different mental workload levels. To evaluate the proposed algorithm, we carry out a comparative analysis between two representative types of working memory tasks using data recorded from an Emotiv EPOC headset which is a mobile low-cost EEG recording device. The experimental results showed that the proposed spatial filtering algorithm outperformed the state-of-the algorithms in terms of the classification accuracy.

  5. Bayesian common spatial patterns for multi-subject EEG classification.

    PubMed

    Kang, Hyohyeong; Choi, Seungjin

    2014-09-01

    Multi-subject electroencephalography (EEG) classification involves algorithm development for automatically categorizing brain waves measured from multiple subjects who undergo the same mental task. Common spatial patterns (CSP) or its probabilistic counterpart, PCSP, is a popular discriminative feature extraction method for EEG classification. Models in CSP or PCSP are trained on a subject-by-subject basis so that inter-subject information is neglected. In the case of multi-subject EEG classification, however, it is desirable to capture inter-subject relatedness in learning a model. In this paper we present a nonparametric Bayesian model for a multi-subject extension of PCSP where subject relatedness is captured by assuming that spatial patterns across subjects share a latent subspace. Spatial patterns and the shared latent subspace are jointly learned by variational inference. We use an infinite latent feature model to automatically infer the dimension of the shared latent subspace, placing Indian Buffet process (IBP) priors on our model. Numerical experiments on BCI competition III IVa and IV 2a dataset demonstrate the high performance of our method, compared to PCSP and existing Bayesian multi-task CSP models.

  6. Filter ensemble regularized common spatial pattern for EEG classification

    NASA Astrophysics Data System (ADS)

    Su, Yuxi; Li, Yali; Wang, Shengjin

    2015-07-01

    Common Spatial Pattern (CSP) is one of the most effective feature extraction algorithm for Brain-Computer Interfaces (BCI). Despite its advantages of wide versatility and high efficiency, CSP is shown to be non-robust to noise and prone to over fitting when training sample number is limited. In order to overcome these problems, Regularized Common Spatial Pattern (RCSP) is further proposed. RCSP regularized covariance matrix estimation by two parameters, which reduces the estimation difference and improves the stationarity under small sample condition. However, RCSP does not make full use of the frequency information. In this paper, we presents a filter ensemble technique for RCSP (FERCSP) to further extract frequency information and aggregate all the RCSPs efficiently to get an ensemble-based solution. The performance of the proposed algorithm is evaluated on data set IVa of BCI Competition III against other five RCSPbased algorithms. The experimental results show that FERCSP significantly outperforms those of the existing methods in classification accuracy. The FERCSP outperforms the CSP algorithm and R-CSP-A algorithm in all five subjects with an average improvement of 6% in accuracy.

  7. Stationary common spatial patterns for brain-computer interfacing

    NASA Astrophysics Data System (ADS)

    Samek, Wojciech; Vidaurre, Carmen; Müller, Klaus-Robert; Kawanabe, Motoaki

    2012-04-01

    Classifying motion intentions in brain-computer interfacing (BCI) is a demanding task as the recorded EEG signal is not only noisy and has limited spatial resolution but it is also intrinsically non-stationary. The non-stationarities in the signal may come from many different sources, for instance, electrode artefacts, muscular activity or changes of task involvement, and often deteriorate classification performance. This is mainly because features extracted by standard methods like common spatial patterns (CSP) are not invariant to variations of the signal properties, thus should also change over time. Although many extensions of CSP were proposed to, for example, reduce the sensitivity to noise or incorporate information from other subjects, none of them tackles the non-stationarity problem directly. In this paper, we propose a method which regularizes CSP towards stationary subspaces (sCSP) and show that this increases classification accuracy, especially for subjects who are hardly able to control a BCI. We compare our method with the state-of-the-art approaches on different datasets, show competitive results and analyse the reasons for the improvement.

  8. Stationary common spatial patterns for brain-computer interfacing.

    PubMed

    Samek, Wojciech; Vidaurre, Carmen; Müller, Klaus-Robert; Kawanabe, Motoaki

    2012-04-01

    Classifying motion intentions in brain-computer interfacing (BCI) is a demanding task as the recorded EEG signal is not only noisy and has limited spatial resolution but it is also intrinsically non-stationary. The non-stationarities in the signal may come from many different sources, for instance, electrode artefacts, muscular activity or changes of task involvement, and often deteriorate classification performance. This is mainly because features extracted by standard methods like common spatial patterns (CSP) are not invariant to variations of the signal properties, thus should also change over time. Although many extensions of CSP were proposed to, for example, reduce the sensitivity to noise or incorporate information from other subjects, none of them tackles the non-stationarity problem directly. In this paper, we propose a method which regularizes CSP towards stationary subspaces (sCSP) and show that this increases classification accuracy, especially for subjects who are hardly able to control a BCI. We compare our method with the state-of-the-art approaches on different datasets, show competitive results and analyse the reasons for the improvement.

  9. Despite Appearances, Cosmic Explosions Have Common Origin, Astronomers Discover

    NASA Astrophysics Data System (ADS)

    2003-11-01

    part encounters less resistance and thus can move outward at greater speeds. Frail pointed out that the radio observations alone had the ability to show the total energy output of the burst, thus providing the breakthrough in understanding the common thread among the different types of explosions. "The key fact is that the optical, X-Ray and gamma-ray telescopes missed 90 percent of the energy put out by this burst," Frail added. "As the VLA Expansion Project progresses and the sensitivity of the VLA improves in the coming years, it will become an even more important tool in unravelling this mystery," Frail said. "The exciting part of this new discovery is that explosions that we once thought were quite different now appear to all have a common origin," Frail concluded. "That insight, of course, gives us the new challenge of explaining how a single mechanism can make itself look so different," he added. In addition to Berger and Frail, the other authors of the paper are Professor Shri Kulkarni of Caltech; Guy Pooley of Cambridge University's Mullard Radio Astronomy Observatory; Vince McIntyre and Robin Wark, both of the Australia Telescope National Facility; Re'em Sari, associate professor of astrophysics and planetary science at Caltech; Derek Fox, a postdoctoral scholar in astronomy at Caltech; Alicia Soderberg, a graduate student in astrophysics at Caltech; Sarah Yost, a graduate student in physics at Caltech; and Paul Price, a postdoctoral scholar at the University of Hawaii's Institute for Astronomy. Berger and Soderberg earlier worked on gamma-ray-burst studies as summer students at NRAO. The National Radio Astronomy Observatory is a facility of the National Science Foundation, operated under cooperative agreement by Associated Universities, Inc.

  10. Common origins and the ethics of planetary seeding

    NASA Astrophysics Data System (ADS)

    Milligan, Tony

    2016-10-01

    Faced with a choice between attempting to seed another world with terrestrially-sourced microbes (with which we would have a shared origin) and microbes sourced from elsewhere within the solar system (whose origins might therefore differ), would we have any non-instrumental ethical reason to favour the terrestrial microbes? What follows will argue that in relation to the goals of promoting life similar to our own, or even simply microbial life, we might conceivably make such an appeal and do so in a defensible manner. However, in no case would such a consideration operate as a silencer for rival considerations (such as likelihood of success, enhancing diversity or historical justice). The thought experiment serves to highlight the diversity of considerations which are in play in ethical deliberation about matters of astrobiology and the role of practical wisdom rather than trumping considerations.

  11. Odontomas and supernumerary teeth: is there a common origin?

    PubMed

    Pippi, Roberto

    2014-01-01

    The aim of the present work is to analyze all scientific evidence to verify whether similarities supporting a unified explanation for odontomas and supernumerary teeth exist. A literature search was first conducted for epidemiologic studies indexed by PubMed, to verify their worldwide incidence. The analysis of the literature data shows some interesting similarities between odontomas and supernumerary teeth concerning their topographic distribution and pathologic manifestations. There is also some indication of common genetic and immuno-histochemical factors. Although from a nosological point of view, odontomas and supernumeraries are classified as distinct entities, they seem to be the expression of the same pathologic process, either malformative or hamartomatous. PMID:25419174

  12. Odontomas and supernumerary teeth: is there a common origin?

    PubMed

    Pippi, Roberto

    2014-01-01

    The aim of the present work is to analyze all scientific evidence to verify whether similarities supporting a unified explanation for odontomas and supernumerary teeth exist. A literature search was first conducted for epidemiologic studies indexed by PubMed, to verify their worldwide incidence. The analysis of the literature data shows some interesting similarities between odontomas and supernumerary teeth concerning their topographic distribution and pathologic manifestations. There is also some indication of common genetic and immuno-histochemical factors. Although from a nosological point of view, odontomas and supernumeraries are classified as distinct entities, they seem to be the expression of the same pathologic process, either malformative or hamartomatous.

  13. Odontomas and Supernumerary Teeth: Is There a Common Origin?

    PubMed Central

    Pippi, Roberto

    2014-01-01

    The aim of the present work is to analyze all scientific evidence to verify whether similarities supporting a unified explanation for odontomas and supernumerary teeth exist. A literature search was first conducted for epidemiologic studies indexed by PubMed, to verify their worldwide incidence. The analysis of the literature data shows some interesting similarities between odontomas and supernumerary teeth concerning their topographic distribution and pathologic manifestations. There is also some indication of common genetic and immuno-histochemical factors. Although from a nosological point of view, odontomas and supernumeraries are classified as distinct entities, they seem to be the expression of the same pathologic process, either malformative or hamartomatous. PMID:25419174

  14. Common extensor origin release in recalcitrant lateral epicondylitis - role justified?

    PubMed Central

    2010-01-01

    The aim of our study was to analyse the efficacy of operative management in recalcitrant lateral epicondylitis of elbow. Forty patients included in this study were referred by general practitioners with a diagnosis of tennis elbow to the orthopaedic department at a district general hospital over a five year period. All had two or more steroid injections at the tender spot, without permanent relief of pain. All subsequently underwent simple fasciotomy of the extensor origin. Of forty patients thirty five had improvement in pain and function, two had persistent symptoms and three did not perceive any improvement. Twenty five had excellent, ten had well, two had fair and three had poor outcomes (recurrent problem; pain at rest and night). Two patients underwent revision surgery. Majority of the patients had improvement in pain and function following operative treatment. In this study, an extensor fasciotomy was demonstrated to be an effective treatment for refractory chronic lateral epicondylitis; however, further studies are warranted. PMID:20459701

  15. The Monros - three medical dynasties with a common origin.

    PubMed

    Macintyre, I; Munro, A

    2015-03-01

    From origins in their heartlands in Easter Ross, clan Munro produced no fewer than three distinct medical dynasties, all descended from Hugh Munro, 9th Baron Foulis (c1352-1425), 12th chief of the clan. This paper describes what we believe to be a unique family of related medical dynasties which were influential in Edinburgh, London and the Scottish Highlands. It sets out in detail the family genealogy, provides some biographical information, and explores the reasons for the development of such medical dynasties, which appear to be different for each of the three dynasties within this family. The 'Edinburgh Monros' included the three Alexanders Monro, primus, secundus and tertius, who between them occupied the university chair of Anatomy at the University of Edinburgh for 126 years from 1720. Dr David Monro, son of Alexander Monro tertius, emigrated to New Zealand where his descendants included several doctors, the last of whom died in 2013. The 'Bedlam Monros' achieved fame, and some notoriety, in managing mental illness in London for the 154 years from 1728-1882. In contrast, the 'Bonesetter Munros' practised their skills in the local community in Ross-shire and one of them attracted patients from all over Britain. They practised their trade for over 100 years from the start of the 19th to the early 20th century. PMID:25874835

  16. A common evolutionary origin for mitochondria and hydrogenosomes.

    PubMed

    Bui, E T; Bradley, P J; Johnson, P J

    1996-09-01

    Trichomonads are among the earliest eukaryotes to diverge from the main line of eukaryotic descent. Keeping with their ancient nature, these facultative anaerobic protists lack two "hallmark" organelles found in most eukaryotes: mitochondria and peroxisomes. Trichomonads do, however, contain an unusual organelle involved in carbohydrate metabolism called the hydrogenosome. Like mitochondria, hydrogenosomes are double-membrane bounded organelles that produce ATP using pyruvate as the primary substrate. Hydrogenosomes are, however, markedly different from mitochondria as they lack DNA, cytochromes and the citric acid cycle. Instead, they contain enzymes typically found in anaerobic bacteria and are capable of producing molecular hydrogen. We show here that hydrogenosomes contain heat shock proteins, Hsp70, Hsp60, and Hsp10, with signature sequences that are conserved only in mitochondrial and alpha-Gram-negative purple bacterial Hsps. Biochemical analysis of hydrogenosomal Hsp60 shows that the mature protein isolated from the organelle lacks a short, N-terminal sequence, similar to that observed for most nuclear-encoded mitochondrial matrix proteins. Moreover, phylogenetic analyses of hydrogenosomal Hsp70, Hsp60, and Hsp10 show that these proteins branch within a monophyletic group composed exclusively of mitochondrial homologues. These data establish that mitochondria and hydrogenosomes have a common eubacterial ancestor and imply that the earliest-branching eukaryotes contained the endosymbiont that gave rise to mitochondria in higher eukaryotes.

  17. Despite Appearances, Cosmic Explosions Have Common Origin, Astronomers Discover

    NASA Astrophysics Data System (ADS)

    2003-11-01

    A Fourth of July fireworks display features bright explosions that light the sky with different colors, yet all have the same cause. They just put their explosive energy into different colors of light. Similarly, astronomers have discovered, a variety of bright cosmic explosions all have the same origin and the same amount of total energy. This is the conclusion of an international team of astronomers that used the National Science Foundation's Very Large Array (VLA) radio telescope to study the closest known gamma-ray burst earlier this year. Artist's conception of burst Artist's Conception of Twin Jets in Energetic Cosmic Explosion CREDIT: Dana Berry, SkyWorks Digital (Click on Image for Larger Version) "For some reason we don't yet understand, these explosions put greatly varying percentages of their explosive energy into the gamma-ray portion of their output," said Dale Frail, of the National Radio Astronomy Observatory (NRAO) in Socorro, NM. That means, he said, that both strong and weak gamma-ray bursts, along with X-ray flashes, which emit almost no gamma rays, are just different forms of the same cosmic beast. The research team reported their results in the November 13 issue of the scientific journal Nature. The scientists trained the VLA on a gamma-ray burst discovered using NASA's HETE-2 satellite last March 29. This burst, dubbed GRB 030329, was the closest such burst yet seen, about 2.6 billion light-years from Earth. Because of this relative proximity, the burst was bright, with visible light from its explosion reaching a level that could be seen in amateur telescopes. As the burst faded, astronomers noted an underlying distinctive signature of a supernova explosion, confirming that the event was associated with the death of a massive star. Since 1999, astronomers have known that the strong outbursts of gamma rays, X-rays, visible light and radio waves from these bursts form beams, like those from a flashlight, rather than spreading in all directions

  18. Exploring a Common Origin for Slow Slip and Tremor in Cascadia

    NASA Astrophysics Data System (ADS)

    Szeliga, W. M.; Melbourne, T. I.; Tahtinen, H.

    2013-12-01

    The close spatial and temporal proximity of many slow faulting phenomena has led to the hypothesis that they are manifestations of a common process. However, the exact nature of this common process is unknown and forms a framework for basic questions about the relationship between episodic tremor and slip. To investigate the possibility of a common origin for tremor and slow slip, we attempt to use one phenomena to describe the other, by using existing catalogs of tremor location and duration to predict geodetically observable surface deformation. Our surface deformation predictions are constructed by assuming that each burst of tremor occurs at the epicenter listed in the catalog, and is assigned a hypocentral depth corresponding to the most current knowledge of the location of the plate interface. Each tremor burst is modeled as a purely dip slip elastic point source dislocation with a moment linearly proportional to duration. The resulting displacement, tilt and strain time series faithfully reproduce observations of the 2010 ETS event along the Cascadia margin, with the exception of observations immediately above the line separating uplift from subsidence. Along this line, which runs N-S through the Straits of Juan de Fuca near Sequim, predicted displacements are uniquely sensitive to the precise location of tremor. We present evidence that, in order to satisfy the surface observations everywhere as well as tremor timing, displacement along the plate interface must occur upwards of 20 km up-dip of catalog tremor locations. At least two interpretations for this requirement are possible: 1. that existing algorithms for tremor epicentral location are systematically biased or 2. that tremor and slip occur simultaneously at different, but nearby, locations on the plate interface. Further, we present evidence that previously estimated coefficients for duration-versus-moment scaling relationships have been overestimated by a factor of 3.

  19. The origin of life is a spatially localized stochastic transition

    PubMed Central

    2012-01-01

    Background Life depends on biopolymer sequences as catalysts and as genetic material. A key step in the Origin of Life is the emergence of an autocatalytic system of biopolymers. Here we study computational models that address the way a living autocatalytic system could have emerged from a non-living chemical system, as envisaged in the RNA World hypothesis. Results We consider (i) a chemical reaction system describing RNA polymerization, and (ii) a simple model of catalytic replicators that we call the Two’s Company model. Both systems have two stable states: a non-living state, characterized by a slow spontaneous rate of RNA synthesis, and a living state, characterized by rapid autocatalytic RNA synthesis. The origin of life is a transition between these two stable states. The transition is driven by stochastic concentration fluctuations involving relatively small numbers of molecules in a localized region of space. These models are simulated on a two-dimensional lattice in which reactions occur locally on single sites and diffusion occurs by hopping of molecules to neighbouring sites. Conclusions If diffusion is very rapid, the system is well-mixed. The transition to life becomes increasingly difficult as the lattice size is increased because the concentration fluctuations that drive the transition become relatively smaller when larger numbers of molecules are involved. In contrast, when diffusion occurs at a finite rate, concentration fluctuations are local. The transition to life occurs in one local region and then spreads across the rest of the surface. The transition becomes easier with larger lattice sizes because there are more independent regions in which it could occur. The key observations that apply to our models and to the real world are that the origin of life is a rare stochastic event that is localized in one region of space due to the limited rate of diffusion of the molecules involved and that the subsequent spread across the surface is

  20. Similarity in Spatial Origin of Information Facilitates Cue Competition and Interference

    ERIC Educational Resources Information Center

    Amundson, Jeffrey C.; Miller, Ralph R.

    2007-01-01

    Two lick suppression studies were conducted with water-deprived rats to investigate the influence of spatial similarity in cue interaction. Experiment 1 assessed the influence of similarity of the spatial origin of competing cues in a blocking procedure. Greater blocking was observed in the condition in which the auditory blocking cue and the…

  1. Remembering our origin: gender differences in spatial memory are reflected in gender differences in hippocampal lateralization.

    PubMed

    Persson, Jonas; Herlitz, Agneta; Engman, Jonas; Morell, Arvid; Sjölie, Daniel; Wikström, Johan; Söderlund, Hedvig

    2013-11-01

    Gender differences in spatial memory favoring men are frequently reported, and the involvement of the hippocampus in these functions is well-established. However, little is known of whether this behavioral gender difference is mirrored in a gender difference in hippocampal function. Here we assessed hippocampal activity, using functional MRI, while 24 men and women moved through three-dimensional virtual mazes (navigation phase) of varying length, and at the end-point estimated the direction of the starting-point (pointing phase). Men were indeed more accurate than women at estimating direction, and this was especially true in longer mazes. Both genders activated the posterior hippocampus throughout the whole task. During the navigation phase, men showed a larger activation in the right hippocampus than women, while in the pointing phase, women showed a larger activation in the left hippocampus than men. Right-lateralized activation during the navigation phase was associated with greater task performance, and may reflect a spatial strategy that is beneficial in this task. Left-sided activation during the pointing phase might reflect a less efficient post hoc verbal recapitulation of the route. This study is the first to identify neural correlates of the commonly observed male advantage in recalling one's original position, and points to hippocampal lateralization as a possible explanation for this behavioral gender difference.

  2. Bilinear common spatial pattern for single-trial ERP-based rapid serial visual presentation triage

    NASA Astrophysics Data System (ADS)

    Yu, K.; Shen, K.; Shao, S.; Ng, W. C.; Li, X.

    2012-08-01

    Common spatial pattern (CSP) analysis is a useful tool for the feature extraction of event-related potentials (ERP). However, CSP is essentially time invariant, and thus unable to exploit the temporal information of ERP. This paper proposes a variant of CSP, namely bilinear common spatial pattern (BCSP), which is capable of accommodating both spatial and temporal information. BCSP generalizes CSP through iteratively optimizing bilinear filters. These bilinear filters constitute a spatio-temporal subspace in which the separation between two conditions is maximized. The method is unique in the sense that it is mathematically intuitive and simple, as all the bilinear filters are obtained by maximizing the power ratio as CSP does. The proposed method was evaluated on 20 subjects’ ERP data collected in rapid serial visual presentation triage experiments. The results show that BCSP achieved significantly higher average test accuracy (12.3% higher, p < 0.001).

  3. Multicollinearity in spatial genetics: separating the wheat from the chaff using commonality analyses.

    PubMed

    Prunier, J G; Colyn, M; Legendre, X; Nimon, K F; Flamand, M C

    2015-01-01

    Direct gradient analyses in spatial genetics provide unique opportunities to describe the inherent complexity of genetic variation in wildlife species and are the object of many methodological developments. However, multicollinearity among explanatory variables is a systemic issue in multivariate regression analyses and is likely to cause serious difficulties in properly interpreting results of direct gradient analyses, with the risk of erroneous conclusions, misdirected research and inefficient or counterproductive conservation measures. Using simulated data sets along with linear and logistic regressions on distance matrices, we illustrate how commonality analysis (CA), a detailed variance-partitioning procedure that was recently introduced in the field of ecology, can be used to deal with nonindependence among spatial predictors. By decomposing model fit indices into unique and common (or shared) variance components, CA allows identifying the location and magnitude of multicollinearity, revealing spurious correlations and thus thoroughly improving the interpretation of multivariate regressions. Despite a few inherent limitations, especially in the case of resistance model optimization, this review highlights the great potential of CA to account for complex multicollinearity patterns in spatial genetics and identifies future applications and lines of research. We strongly urge spatial geneticists to systematically investigate commonalities when performing direct gradient analyses.

  4. A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids.

    PubMed

    Janouskovec, Jan; Horák, Ales; Oborník, Miroslav; Lukes, Julius; Keeling, Patrick J

    2010-06-15

    The discovery of a nonphotosynthetic plastid in malaria and other apicomplexan parasites has sparked a contentious debate about its evolutionary origin. Molecular data have led to conflicting conclusions supporting either its green algal origin or red algal origin, perhaps in common with the plastid of related dinoflagellates. This distinction is critical to our understanding of apicomplexan evolution and the evolutionary history of endosymbiosis and photosynthesis; however, the two plastids are nearly impossible to compare due to their nonoverlapping information content. Here we describe the complete plastid genome sequences and plastid-associated data from two independent photosynthetic lineages represented by Chromera velia and an undescribed alga CCMP3155 that we show are closely related to apicomplexans. These plastids contain a suite of features retained in either apicomplexan (four plastid membranes, the ribosomal superoperon, conserved gene order) or dinoflagellate plastids (form II Rubisco acquired by horizontal transfer, transcript polyuridylylation, thylakoids stacked in triplets) and encode a full collective complement of their reduced gene sets. Together with whole plastid genome phylogenies, these characteristics provide multiple lines of evidence that the extant plastids of apicomplexans and dinoflagellates were inherited by linear descent from a common red algal endosymbiont. Our phylogenetic analyses also support their close relationship to plastids of heterokont algae, indicating they all derive from the same endosymbiosis. Altogether, these findings support a relatively simple path of linear descent for the evolution of photosynthesis in a large proportion of algae and emphasize plastid loss in several lineages (e.g., ciliates, Cryptosporidium, and Phytophthora).

  5. A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

    PubMed Central

    Janouškovec, Jan; Horák, Aleš; Oborník, Miroslav; Lukeš, Julius; Keeling, Patrick J.

    2010-01-01

    The discovery of a nonphotosynthetic plastid in malaria and other apicomplexan parasites has sparked a contentious debate about its evolutionary origin. Molecular data have led to conflicting conclusions supporting either its green algal origin or red algal origin, perhaps in common with the plastid of related dinoflagellates. This distinction is critical to our understanding of apicomplexan evolution and the evolutionary history of endosymbiosis and photosynthesis; however, the two plastids are nearly impossible to compare due to their nonoverlapping information content. Here we describe the complete plastid genome sequences and plastid-associated data from two independent photosynthetic lineages represented by Chromera velia and an undescribed alga CCMP3155 that we show are closely related to apicomplexans. These plastids contain a suite of features retained in either apicomplexan (four plastid membranes, the ribosomal superoperon, conserved gene order) or dinoflagellate plastids (form II Rubisco acquired by horizontal transfer, transcript polyuridylylation, thylakoids stacked in triplets) and encode a full collective complement of their reduced gene sets. Together with whole plastid genome phylogenies, these characteristics provide multiple lines of evidence that the extant plastids of apicomplexans and dinoflagellates were inherited by linear descent from a common red algal endosymbiont. Our phylogenetic analyses also support their close relationship to plastids of heterokont algae, indicating they all derive from the same endosymbiosis. Altogether, these findings support a relatively simple path of linear descent for the evolution of photosynthesis in a large proportion of algae and emphasize plastid loss in several lineages (e.g., ciliates, Cryptosporidium, and Phytophthora). PMID:20534454

  6. On the origin of the spatial inhomogeneity of photoluminescence in thin-film CIGS solar devices

    NASA Astrophysics Data System (ADS)

    El-Hajje, Gilbert; Ory, Daniel; Guillemoles, Jean-François; Lombez, Laurent

    2016-07-01

    In this letter, we investigate the origin of the spatial inhomogeneity of the photoluminescence (PL) intensity maps obtained on thin-film solar cells. Based on a hyperspectral imager setup, we record an absolute map of the quasi-Fermi level splitting Δμ by applying the generalized Planck's law. Then, using scanning confocal microscopy, we perform spatially and time-resolved photoluminescence measurements. This allowed us to quantify and map the micrometric fluctuations of the trapping defect density within these solar cells. Finally, we demonstrate the existence of a direct correlation between the spatial fluctuations of the quasi-Fermi level splitting and the trapping defect density. The latter was found to be correlated with the frequently reported spatially inhomogeneous PL maps of thin-film solar cells. Based on the observed correlation, we can quantify the local losses in quasi-Fermi level splitting induced by the spatial distribution of the trapping defects.

  7. Mitochondria, the Cell Cycle, and the Origin of Sex via a Syncytial Eukaryote Common Ancestor.

    PubMed

    Garg, Sriram G; Martin, William F

    2016-01-01

    Theories for the origin of sex traditionally start with an asexual mitosing cell and add recombination, thereby deriving meiosis from mitosis. Though sex was clearly present in the eukaryote common ancestor, the order of events linking the origin of sex and the origin of mitosis is unknown. Here, we present an evolutionary inference for the origin of sex starting with a bacterial ancestor of mitochondria in the cytosol of its archaeal host. We posit that symbiotic association led to the origin of mitochondria and gene transfer to host's genome, generating a nucleus and a dedicated translational compartment, the eukaryotic cytosol, in which-by virtue of mitochondria-metabolic energy was not limiting. Spontaneous protein aggregation (monomer polymerization) and Adenosine Tri-phosphate (ATP)-dependent macromolecular movement in the cytosol thereby became selectable, giving rise to continuous microtubule-dependent chromosome separation (reduction division). We propose that eukaryotic chromosome division arose in a filamentous, syncytial, multinucleated ancestor, in which nuclei with insufficient chromosome numbers could complement each other through mRNA in the cytosol and generate new chromosome combinations through karyogamy. A syncytial (or coenocytic, a synonym) eukaryote ancestor, or Coeca, would account for the observation that the process of eukaryotic chromosome separation is more conserved than the process of eukaryotic cell division. The first progeny of such a syncytial ancestor were likely equivalent to meiospores, released into the environment by the host's vesicle secretion machinery. The natural ability of archaea (the host) to fuse and recombine brought forth reciprocal recombination among fusing (syngamy and karyogamy) progeny-sex-in an ancestrally meiotic cell cycle, from which the simpler haploid and diploid mitotic cell cycles arose. The origin of eukaryotes was the origin of vertical lineage inheritance, and sex was required to keep vertically

  8. Mitochondria, the Cell Cycle, and the Origin of Sex via a Syncytial Eukaryote Common Ancestor.

    PubMed

    Garg, Sriram G; Martin, William F

    2016-07-02

    Theories for the origin of sex traditionally start with an asexual mitosing cell and add recombination, thereby deriving meiosis from mitosis. Though sex was clearly present in the eukaryote common ancestor, the order of events linking the origin of sex and the origin of mitosis is unknown. Here, we present an evolutionary inference for the origin of sex starting with a bacterial ancestor of mitochondria in the cytosol of its archaeal host. We posit that symbiotic association led to the origin of mitochondria and gene transfer to host's genome, generating a nucleus and a dedicated translational compartment, the eukaryotic cytosol, in which-by virtue of mitochondria-metabolic energy was not limiting. Spontaneous protein aggregation (monomer polymerization) and Adenosine Tri-phosphate (ATP)-dependent macromolecular movement in the cytosol thereby became selectable, giving rise to continuous microtubule-dependent chromosome separation (reduction division). We propose that eukaryotic chromosome division arose in a filamentous, syncytial, multinucleated ancestor, in which nuclei with insufficient chromosome numbers could complement each other through mRNA in the cytosol and generate new chromosome combinations through karyogamy. A syncytial (or coenocytic, a synonym) eukaryote ancestor, or Coeca, would account for the observation that the process of eukaryotic chromosome separation is more conserved than the process of eukaryotic cell division. The first progeny of such a syncytial ancestor were likely equivalent to meiospores, released into the environment by the host's vesicle secretion machinery. The natural ability of archaea (the host) to fuse and recombine brought forth reciprocal recombination among fusing (syngamy and karyogamy) progeny-sex-in an ancestrally meiotic cell cycle, from which the simpler haploid and diploid mitotic cell cycles arose. The origin of eukaryotes was the origin of vertical lineage inheritance, and sex was required to keep vertically

  9. The examination of commercial printing defects to assess common origin, batch variation, and error rate.

    PubMed

    LaPorte, Gerald M; Stephens, Joseph C; Beuchel, Amanda K

    2010-01-01

    The examination of printing defects, or imperfections, found on printed or copied documents has been recognized as a generally accepted approach for linking questioned documents to a common source. This research paper will highlight the results from two mutually exclusive studies. The first involved the examination and characterization of printing defects found in a controlled production run of 500,000 envelopes bearing text and images. It was concluded that printing defects are random occurrences and that morphological differences can be used to identify variations within the same production batch. The second part incorporated a blind study to assess the error rate of associating randomly selected envelopes from different retail locations to a known source. The examination was based on the comparison of printing defects in the security patterns found in some envelopes. The results demonstrated that it is possible to associate envelopes to a common origin with a 0% error rate.

  10. The developmental origins of spatial navigation: are we headed in the right direction?

    PubMed

    Blumberg, Mark S

    2015-02-01

    Navigation depends upon neural systems that monitor spatial location and head orientation. Recent developmental findings have led some to conclude that these systems are innate. Such claims are premature. But also, there are more meaningful ways to arrive at answers about developmental origins than by invoking the outdated nature-nurture dichotomy. PMID:25600500

  11. Identification of the Common Origins of Osteoclasts, Macrophages, and Dendritic Cells in Human Hematopoiesis.

    PubMed

    Xiao, Yanling; Zijl, Sebastiaan; Wang, Liqin; de Groot, Daniel C; van Tol, Maarten J; Lankester, Arjan C; Borst, Jannie

    2015-06-01

    Osteoclasts (OCs) originate from the myeloid cell lineage, but the successive steps in their lineage commitment are ill-defined, especially in humans. To clarify OC origin, we sorted cell populations from pediatric bone marrow (BM) by flow cytometry and assessed their differentiation potential in vitro. Within the CD11b(-)CD34(+)c-KIT(+) BM cell population, OC-differentiation potential was restricted to FLT3(+) cells and enriched in an IL3 receptor (R)α(high) subset that constituted less than 0.5% of total BM. These IL3Rα(high) cells also generated macrophages (MΦs) and dendritic cells (DCs) but lacked granulocyte (GR)-differentiation potential, as demonstrated at the clonal level. The IL3Rα(low) subset was re-defined as common progenitor of GR, MΦ, OC, and DC (GMODP) and gave rise to the IL3Rα(high) subset that was identified as common progenitor of MΦ, OC, and DC (MODP). Unbiased transcriptome analysis of CD11b(-)CD34(+)c-KIT(+)FLT3(+) IL3Rα(low) and IL3Rα(high) subsets corroborated our definitions of the GMODP and MODP and their developmental relationship.

  12. Noninvasive determination of spatial distribution and temporal gradient of wall shear stress at common carotid artery.

    PubMed

    Sui, Binbin; Gao, Peiyi; Lin, Yan; Qin, Haiqiang; Liu, Long; Liu, Guangrui

    2008-10-20

    Wall shear stress (WSS) has been proved to play a critical role in formation and development of atherosclerotic plaques. Our objective was to quantify local WSS in vivo in normal subjects, and to analyze spatial distribution patterns and determine the temporal gradient of WSS. Seventy-eight CCAs of 42 healthy volunteers at common carotid arteries (CCAs) were studied. Cine phase-contrast MR sequence was used to acquire the flow velocity information. Three-dimensional paraboloid modeling was applied to fit the velocity profiles and WSS values were calculated. Mean WSS value for CCAs was 0.783+/-0.209, with the range of WSS value from -0.541 to 3.464 N/m(2). The 95% confidence interval for mean WSS value in CCA was (0.736-0.830) N/m(2). Different WSS spatial distribution patterns were classified into three types according to the location of low WSS values during a cardiac cycle. Mean value of maximum temporal gradient of WSS was 14.12+/-5.46, with the range from 5.87 to 33.23 N/m(2)s(-1). Skewed velocity profiles were displayed in most CCAs, indicating the flow patterns in CCA were more complicated than commonly assumed. Obvious inter-subject variation were found in magnitude, spatial distribution and the temporal gradient of WSS in CCAs, and the blood flow patterns as well.

  13. Cognitive aging: a common decline of episodic recollection and spatial memory in rats.

    PubMed

    Robitsek, R Jonathan; Fortin, Norbert J; Koh, Ming Teng; Gallagher, Michela; Eichenbaum, Howard

    2008-09-01

    In humans, recognition memory declines with aging, and this impairment is characterized by a selective loss in recollection of previously studied items contrasted with relative sparing of familiarity for items in the study list. Rodent models of cognitive aging have focused on water maze learning and have demonstrated an age-associated loss in spatial, but not cued memory. The current study examined odor recognition memory in young and aged rats and compared performance in recognition with that in water maze learning. In the recognition task, young rats used both recollection and familiarity. In contrast, the aged rats showed a selective loss of recollection and relative sparing of familiarity, similar to the effects of hippocampal damage. Furthermore, performance on the recall component, but not the familiarity component, of recognition was correlated with spatial memory and recollection was poorer in aged rats that were also impaired in spatial memory. These results extend the pattern of impairment in recollection and relative sparing of familiarity observed in human cognitive aging to rats, and suggest a common age-related impairment in both spatial learning and the recollective component of nonspatial recognition memory.

  14. The spatial and temporal organization of origin firing during the S-phase of fission yeast.

    PubMed

    Kaykov, Atanas; Nurse, Paul

    2015-03-01

    Eukaryotes duplicate their genomes using multiple replication origins, but the organization of origin firing along chromosomes and during S-phase is not well understood. Using fission yeast, we report the first genome-wide analysis of the spatial and temporal organization of replication origin firing, analyzed using single DNA molecules that can approach the full length of chromosomes. At S-phase onset, origins fire randomly and sparsely throughout the chromosomes. Later in S-phase, clusters of fired origins appear embedded in the sparser regions, which form the basis of nuclear replication foci. The formation of clusters requires proper histone methylation and acetylation, and their locations are not inherited between cell cycles. The rate of origin firing increases gradually, peaking just before mid S-phase. Toward the end of S-phase, nearly all the available origins within the unreplicated regions are fired, contributing to the timely completion of genome replication. We propose that the majority of origins do not fire as a part of a deterministic program. Instead, origin firing, both individually and as clusters, should be viewed as being mostly stochastic.

  15. Model based generalization analysis of common spatial pattern in brain computer interfaces

    PubMed Central

    Liu, Guangquan; Meng, Jianjun; Zhang, Dingguo; Zhu, Xiangyang

    2010-01-01

    In the motor imagery based Brain Computer Interface (BCI) research, Common Spatial Pattern (CSP) algorithm is used widely as a spatial filter on multi-channel electroencephalogram (EEG) recordings. Recently the overfitting effect of CSP has been gradually noticed, but what influence the overfitting is still unclear. In this work, the generalization of CSP is investigated by a simple linear mixing model. Several factors in this model are discussed, and the simulation results indicate that channel numbers and the correlation between signals influence the generalization of CSP significantly. A larger number of training trials and a longer time length of the trial would prevent overfitting. The experiments on real data also verify our conclusion. PMID:21886674

  16. [Study on Electroencephalogram Recognition Framework by Common Spatial Pattern and Fuzzy Fusion].

    PubMed

    Xu, Luqiang; Xiao, Guangcan; Li, Maofeng

    2015-12-01

    Common spatial pattern (CSP) is a very popular method for spatial filtering to extract the features from electroencephalogram (EEG) signals, but it may cause serious over-fitting issue. In this paper, after the extraction and recognition of feature, we present a new way in which the recognition results are fused to overcome the over-fitting and improve recognition accuracy. And then a new framework for EEG recognition is proposed by using CSP to extract features from EEG signals, using linear discriminant analysis (LDA) classifiers to identify the user's mental state from such features, and using Choquet fuzzy integral to fuse classifiers results. Brain-computer interface (BCI) competition 2005 data sets IVa was used to validate the framework. The results demonstrated that it effective ly improved recognition and to some extent overcome the over-fitting problem of CSP. It showed the effectiveness of this framework for dealing with EEG. PMID:27079082

  17. Contrarian clade confirms the ubiquity of spatial origination patterns in the production of latitudinal diversity gradients

    PubMed Central

    Krug, Andrew Z.; Jablonski, David; Valentine, James W.

    2007-01-01

    The latitudinal diversity gradient (LDG), wherein the number of species and higher taxa peaks in the tropics and decreases toward the poles, is the best-documented large-scale diversity pattern on Earth, but hypotheses explaining the standard LDG must also account for rare “contrarian” taxa that show diversity maxima outside of the tropics. For marine bivalves, one of the few groups that provide spatially explicit temporal data on a global scale, we show that a major contrarian group, the Anomalodesmata, unexpectedly exhibits the same large-scale dynamics as related clades having normal LDGs in two key respects. First, maxima in standing genus diversity and genus origination rates coincide spatially. Second, the strength of a clade's present-day LDG is significantly related to the proportion of its living genera that originated in the tropics during the late Cenozoic, with the contrarian gradient strength at both species and genus level predicted quantitatively by the values for the other clades. Geologic age distributions indicate that the anomalous LDG results from origination that is damped in the tropics rather than heightened in the temperate zones. The pervasive role of spatial origination patterns in shaping LDGs, regardless of the position of their diversity maxima, corroborates hypotheses based on clades showing standard gradients and underscores the insights that contrarian groups can provide into general principles of diversity dynamics. PMID:17989214

  18. [Dementia and psychotic disorders in parkinsonism: common origin and new perspectives in therapy].

    PubMed

    Litvinenko, I V

    2004-01-01

    In this article, we reviewed and analysed the literature of mechanism of cognitive and psychotic disorders in schizophrenia, dementia and Parkinson's disease. Despite of opposite neurotransmitter disturbances in schizophrenia and Parkinson's disease, there is common origin in development of psychotic symptoms. The main risk factors in producing psychotic symptoms are age, cognitive impairment and general disease severity. The key neurotransmitter disturbance of dementia is hypofunction of glutamatergic and cholinergic transmitter systems. An hypofunction of the NMDA glutamate receptors can produce excessively stimulation corticolimbic dopaminergic and serotonergic neurons and appearance of psychosis. We suggest glutamate NMDA receptors can modulate activity of dopaminergic, serotonergic and cholinergic transmitter systems. Successful pharmacological approaches in therapy of cognitive and psychotic disorders in Parkinson's disease may be normalization conditions of glutamatergic and cholinergic transmitter systems.

  19. Common variants spanning PLK4 are associated with mitotic-origin aneuploidy in human embryos.

    PubMed

    McCoy, Rajiv C; Demko, Zachary; Ryan, Allison; Banjevic, Milena; Hill, Matthew; Sigurjonsson, Styrmir; Rabinowitz, Matthew; Fraser, Hunter B; Petrov, Dmitri A

    2015-04-10

    Aneuploidy, the inheritance of an atypical chromosome complement, is common in early human development and is the primary cause of pregnancy loss. By screening day-3 embryos during in vitro fertilization cycles, we identified an association between aneuploidy of putative mitotic origin and linked genetic variants on chromosome 4 of maternal genomes. This associated region contains a candidate gene, Polo-like kinase 4 (PLK4), that plays a well-characterized role in centriole duplication and has the ability to alter mitotic fidelity upon minor dysregulation. Mothers with the high-risk genotypes contributed fewer embryos for testing at day 5, suggesting that their embryos are less likely to survive to blastocyst formation. The associated region coincides with a signature of a selective sweep in ancient humans, suggesting that the causal variant was either the target of selection or hitchhiked to substantial frequency.

  20. Fever of unknown origin in a patient with common variable immunodeficiency associated with multisystemic granulomatous disease.

    PubMed

    Fernández-Ruiz, Mario; Guerra-Vales, Juan-Manuel; Francisco-Javier, Castelbón-Fernández; Yolanda, Rodriguez-Gil; Miguel-Ingel, Martánez-González; Cristina, Garfia-Castillo; Jesús, Ruiz-Contreras

    2007-01-01

    Non-caseating epithelioid granulomas have been described in a small number of patients with common variable immunodeficiency (CVID). We report a 26-year-old woman diagnosed with CVID nine years earlier, who developed non-caseating granulomas in the liver, bone marrow and skin. She was referred to our department for a fever of more than one year duration without apparent focus. Extensive search for underlying malignancy or occult infection was unremarkable. Empirical treatment with prednisone was begun and the patient showed a marked improvement. The literature on the association between CVID and non-caseating granulomatous disease, and the differential diagnosis of hepatic granulomas as a cause of fever of unknown origin, is also reviewed.

  1. Cells of a common developmental origin regulate REM/non-REM sleep and wakefulness in mice.

    PubMed

    Hayashi, Yu; Kashiwagi, Mitsuaki; Yasuda, Kosuke; Ando, Reiko; Kanuka, Mika; Sakai, Kazuya; Itohara, Shigeyoshi

    2015-11-20

    Mammalian sleep comprises rapid eye movement (REM) sleep and non-REM (NREM) sleep. To functionally isolate from the complex mixture of neurons populating the brainstem pons those involved in switching between REM and NREM sleep, we chemogenetically manipulated neurons of a specific embryonic cell lineage in mice. We identified excitatory glutamatergic neurons that inhibit REM sleep and promote NREM sleep. These neurons shared a common developmental origin with neurons promoting wakefulness; both derived from a pool of proneural hindbrain cells expressing Atoh1 at embryonic day 10.5. We also identified inhibitory γ-aminobutyric acid-releasing neurons that act downstream to inhibit REM sleep. Artificial reduction or prolongation of REM sleep in turn affected slow-wave activity during subsequent NREM sleep, implicating REM sleep in the regulation of NREM sleep.

  2. Feature Extraction for BCIs Based on Electromagnetic Source Localization and Multiclass Filter Bank Common Spatial Patterns.

    PubMed

    Zaitcev, Aleksandr; Cook, Greg; Wei Liu; Paley, Martyn; Milne, Elizabeth

    2015-08-01

    Brain-Computer Interfaces (BCIs) provide means for communication and control without muscular movement and, therefore, can offer significant clinical benefits. Electrical brain activity recorded by electroencephalography (EEG) can be interpreted into software commands by various classification algorithms according to the descriptive features of the signal. In this paper we propose a novel EEG BCI feature extraction method employing EEG source reconstruction and Filter Bank Common Spatial Patterns (FBCSP) based on Joint Approximate Diagonalization (JAD). The proposed method is evaluated by the commonly used reference EEG dataset yielding an average classification accuracy of 77.1 ± 10.1 %. It is shown that FBCSP feature extraction applied to reconstructed source components outperforms conventional CSP and FBCSP feature extraction methods applied to signals in the sensor domain.

  3. Genomic selection for recovery of original genetic background from hybrids of endangered and common breeds

    PubMed Central

    Amador, Carmen; Hayes, Ben J; Daetwyler, Hans D

    2014-01-01

    Critically endangered breeds and populations are often crossed with more common breeds or subspecies. This results in genetic admixture that can be undesirable when it challenges the genetic integrity of wild and domestic populations, causing a loss in special characteristics or unique genetic material and ultimately extinction. Here, we present two genomic selection strategies, using genome-wide DNA markers, to recover the genomic content of the original endangered population from admixtures. Each strategy relies on the estimation of the proportion of nonintrogressed genome in individuals based on a different method: either genomic prediction or identification of breed-specific haplotypes. Then, breeding programs that remove introgressed genomic information can be designed. To test these strategies, we used empirical 50K SNP array data from two pure sheep breeds, Merino (used as target breed), Poll Dorset and an existing admixed population of both breeds. Sheep populations with varying degrees of introgression and admixture were simulated starting from these real genotypes. Both strategies were capable of identifying segment origin, and both removed up to the 100% of the Poll Dorset segments. While the selection process led to substantial inbreeding, we controlled it by imposing a minimum number of individuals contributing to the next generation. PMID:24567744

  4. Origin and Evolution of Water Oxidation before the Last Common Ancestor of the Cyanobacteria.

    PubMed

    Cardona, Tanai; Murray, James W; Rutherford, A William

    2015-05-01

    Photosystem II, the water oxidizing enzyme, altered the course of evolution by filling the atmosphere with oxygen. Here, we reconstruct the origin and evolution of water oxidation at an unprecedented level of detail by studying the phylogeny of all D1 subunits, the main protein coordinating the water oxidizing cluster (Mn4CaO5) of Photosystem II. We show that D1 exists in several forms making well-defined clades, some of which could have evolved before the origin of water oxidation and presenting many atypical characteristics. The most ancient form is found in the genome of Gloeobacter kilaueensis JS-1 and this has a C-terminus with a higher sequence identity to D2 than to any other D1. Two other groups of early evolving D1 correspond to those expressed under prolonged far-red illumination and in darkness. These atypical D1 forms are characterized by a dramatically different Mn4CaO5 binding site and a Photosystem II containing such a site may assemble an unconventional metal cluster. The first D1 forms with a full set of ligands to the Mn4CaO5 cluster are grouped with D1 proteins expressed only under low oxygen concentrations and the latest evolving form is the dominant type of D1 found in all cyanobacteria and plastids. In addition, we show that the plastid ancestor had a D1 more similar to those in early branching Synechococcus. We suggest each one of these forms of D1 originated from transitional forms at different stages toward the innovation and optimization of water oxidation before the last common ancestor of all known cyanobacteria.

  5. Origin and Evolution of Water Oxidation before the Last Common Ancestor of the Cyanobacteria

    PubMed Central

    Cardona, Tanai; Murray, James W.; Rutherford, A. William

    2015-01-01

    Photosystem II, the water oxidizing enzyme, altered the course of evolution by filling the atmosphere with oxygen. Here, we reconstruct the origin and evolution of water oxidation at an unprecedented level of detail by studying the phylogeny of all D1 subunits, the main protein coordinating the water oxidizing cluster (Mn4CaO5) of Photosystem II. We show that D1 exists in several forms making well-defined clades, some of which could have evolved before the origin of water oxidation and presenting many atypical characteristics. The most ancient form is found in the genome of Gloeobacter kilaueensis JS-1 and this has a C-terminus with a higher sequence identity to D2 than to any other D1. Two other groups of early evolving D1 correspond to those expressed under prolonged far-red illumination and in darkness. These atypical D1 forms are characterized by a dramatically different Mn4CaO5 binding site and a Photosystem II containing such a site may assemble an unconventional metal cluster. The first D1 forms with a full set of ligands to the Mn4CaO5 cluster are grouped with D1 proteins expressed only under low oxygen concentrations and the latest evolving form is the dominant type of D1 found in all cyanobacteria and plastids. In addition, we show that the plastid ancestor had a D1 more similar to those in early branching Synechococcus. We suggest each one of these forms of D1 originated from transitional forms at different stages toward the innovation and optimization of water oxidation before the last common ancestor of all known cyanobacteria. PMID:25657330

  6. Common origins of diverse misconceptions: cognitive principles and the development of biology thinking.

    PubMed

    Coley, John D; Tanner, Kimberly D

    2012-01-01

    Many ideas in the biological sciences seem especially difficult to understand, learn, and teach successfully. Our goal in this feature is to explore how these difficulties may stem not from the complexity or opacity of the concepts themselves, but from the fact that they may clash with informal, intuitive, and deeply held ways of understanding the world that have been studied for decades by psychologists. We give a brief overview of the field of developmental cognitive psychology. Then, in each of the following sections, we present a number of common challenges faced by students in the biological sciences. These may be in the form of misconceptions, biases, or simply concepts that are difficult to learn and teach, and they occur at all levels of biological analysis (molecular, cellular, organismal, population, and ecosystem). We then introduce the notion of a cognitive construal and discuss specific examples of how these cognitive principles may explain what makes some misconceptions so alluring and some biological concepts so challenging for undergraduates. We will argue that seemingly unrelated misconceptions may have common origins in a single underlying cognitive construal. These ideas emerge from our own ongoing cross-disciplinary conversation, and we think that expanding this conversation to include other biological scientists and educators, as well as other cognitive scientists, could have significant utility in improving biology teaching and learning.

  7. Common Origins of Diverse Misconceptions: Cognitive Principles and the Development of Biology Thinking

    PubMed Central

    Coley, John D.; Tanner, Kimberly D.

    2012-01-01

    Many ideas in the biological sciences seem especially difficult to understand, learn, and teach successfully. Our goal in this feature is to explore how these difficulties may stem not from the complexity or opacity of the concepts themselves, but from the fact that they may clash with informal, intuitive, and deeply held ways of understanding the world that have been studied for decades by psychologists. We give a brief overview of the field of developmental cognitive psychology. Then, in each of the following sections, we present a number of common challenges faced by students in the biological sciences. These may be in the form of misconceptions, biases, or simply concepts that are difficult to learn and teach, and they occur at all levels of biological analysis (molecular, cellular, organismal, population, and ecosystem). We then introduce the notion of a cognitive construal and discuss specific examples of how these cognitive principles may explain what makes some misconceptions so alluring and some biological concepts so challenging for undergraduates. We will argue that seemingly unrelated misconceptions may have common origins in a single underlying cognitive construal. These ideas emerge from our own ongoing cross-disciplinary conversation, and we think that expanding this conversation to include other biological scientists and educators, as well as other cognitive scientists, could have significant utility in improving biology teaching and learning. PMID:22949417

  8. Effects of spatial disturbance on common loon nest site selection and territory success

    USGS Publications Warehouse

    McCarthy, K.P.; DeStefano, S.

    2011-01-01

    The common loon (Gavia immer) breeds during the summer on northern lakes and water bodies that are also often desirable areas for aquatic recreation and human habitation. In northern New England, we assessed how the spatial nature of disturbance affects common loon nest site selection and territory success. We found through classification and regression analysis that distance to and density of disturbance factors can be used to classify observed nest site locations versus random points, suggesting that these factors affect loon nest site selection (model 1: Correct classification = 75%, null = 50%, K = 0.507, P < 0.001; model 2: Correct classification = 78%, null = 50%, K = 0.551, P < 0.001). However, in an exploratory analysis, we were unable to show a relation between spatial disturbance variables and breeding success (P = 0.595, R 2 = 0.436), possibly because breeding success was so low during the breeding seasons of 2007-2008. We suggest that by selecting nest site locations that avoid disturbance factors, loons thereby limit the effect that disturbance will have on their breeding success. Still, disturbance may force loons to use sub-optimal nesting habitat, limiting the available number of territories, and overall productivity. We advise that management efforts focus on limiting disturbance factors to allow breeding pairs access to the best nesting territories, relieving disturbance pressures that may force sub-optimal nest placement. ?? 2011 The Wildlife Society.

  9. Estimating seed vs. pollen dispersal from spatial genetic structure in the common ash.

    PubMed

    Heuertz, M; Vekemans, X; Hausman, J-F; Palada, M; Hardy, O J

    2003-09-01

    Spatial genetic structure was analysed with five highly polymorphic microsatellite loci in a Romanian population of common ash (Fraxinus excelsior L.), a wind-pollinated and wind-dispersed tree species occurring in mixed deciduous forests over almost all of Europe. Contributions of seed and pollen dispersal to total gene flow were investigated by analysing the pattern of decrease in kinship coefficients among pairs of individuals with geographical distance and comparing it with simulation results. Plots of kinship against the logarithm of distance were decomposed into a slope and a shape component. Simulations showed that the slope is informative about the global level of gene flow, in agreement with theoretical expectations, whereas the shape component was correlated with the relative importance of seed vs. pollen dispersal. Hence, our results indicate that insights into the relative contributions of seed and pollen dispersal to overall gene flow can be gained from details of the pattern of spatial genetic structure at biparentally inherited loci. In common ash, the slope provided an estimate of total gene dispersal in terms of Wright's neighbourhood size of Nb = 519 individuals. No precise estimate of seed vs. pollen flow could be obtained from the shape because of the stochasticity inherent to the data, but the parameter combinations that best fitted the data indicated restricted seed flow, sigmas pound 14 m, and moderate pollen flow, 70 m pound sigmap pound 140 m.

  10. Spatially Common Sparsity Based Adaptive Channel Estimation and Feedback for FDD Massive MIMO

    NASA Astrophysics Data System (ADS)

    Gao, Zhen; Dai, Linglong; Wang, Zhaocheng; Chen, Sheng

    2015-12-01

    This paper proposes a spatially common sparsity based adaptive channel estimation and feedback scheme for frequency division duplex based massive multi-input multi-output (MIMO) systems, which adapts training overhead and pilot design to reliably estimate and feed back the downlink channel state information (CSI) with significantly reduced overhead. Specifically, a non-orthogonal downlink pilot design is first proposed, which is very different from standard orthogonal pilots. By exploiting the spatially common sparsity of massive MIMO channels, a compressive sensing (CS) based adaptive CSI acquisition scheme is proposed, where the consumed time slot overhead only adaptively depends on the sparsity level of the channels. Additionally, a distributed sparsity adaptive matching pursuit algorithm is proposed to jointly estimate the channels of multiple subcarriers. Furthermore, by exploiting the temporal channel correlation, a closed-loop channel tracking scheme is provided, which adaptively designs the non-orthogonal pilot according to the previous channel estimation to achieve an enhanced CSI acquisition. Finally, we generalize the results of the multiple-measurement-vectors case in CS and derive the Cramer-Rao lower bound of the proposed scheme, which enlightens us to design the non-orthogonal pilot signals for the improved performance. Simulation results demonstrate that the proposed scheme outperforms its counterparts, and it is capable of approaching the performance bound.

  11. Origin of apparent period variations in eclipsing post-common-envelope binaries

    NASA Astrophysics Data System (ADS)

    Zorotovic, M.; Schreiber, M. R.

    2013-01-01

    Context. Apparent period variations detected in several eclipsing, close-compact binaries are frequently interpreted as being caused by circumbinary giant planets. This interpretation raises the question of the origin of the potential planets that must have either formed in the primordial circumbinary disk, together with the host binary star, and survived its evolution into a close-compact binary or formed in a post-common-envelope circumbinary disk that remained bound to the post-common-envelope binary (PCEB). Aims: Here we combine current knowledge of planet formation and the statistics of giant planets around primordial and evolved binary stars with the theory of close-compact binary star evolution aiming to derive new constraints on possible formation scenarios. Methods: We compiled a comprehensive list of observed eclipsing PCEBs, estimated the fraction of systems showing apparent period variations, reconstructed the evolutionary history of the PCEBs, and performed binary population models of PCEBs to characterize their main sequence binary progenitors. We reviewed the currently available constraints on the fraction of PCEB progenitors that host circumbinary giant planets. Results: We find that the progenitors of PCEBs are very unlikely to be frequent hosts of giant planets (≲10 per cent), while the frequency of PCEBs with observed apparent period variations is very high (~90 per cent). Conclusions: The variations in eclipse timings measured in eclipsing PCEBs are probably not caused by first-generation planets that survived common-envelope evolution. The remaining options for explaining the observed period variations are second-generation planet formation or perhaps variations in the shape of a magnetically active secondary star. We suggest observational tests for both options. Appendix A is available in electronic form at http://www.aanda.org

  12. Common sole in the northern and central Adriatic Sea: Spatial management scenarios to rebuild the stock

    NASA Astrophysics Data System (ADS)

    Scarcella, Giuseppe; Grati, Fabio; Raicevich, Saša; Russo, Tommaso; Gramolini, Roberto; Scott, Robert D.; Polidori, Piero; Domenichetti, Filippo; Bolognini, Luca; Giovanardi, Otello; Celić, Igor; Sabatini, Laura; Vrgoč, Nedo; Isajlović, Igor; Marčeta, Bojan; Fabi, Gianna

    2014-05-01

    The northern and central Adriatic Sea represents an important spawning and aggregation area for common sole (Solea solea) and provides for around 20% of the Mediterranean landings. In this area, this resource is mainly exploited with rapido trawl and set nets. The stock is not yet depleted and faces a situation of growth overfishing. The comparison between the spatial distribution by age of S. solea and the geographic patterns of the rapido trawl fishing effort evidenced an overlapping of this fishing activity with the area where juveniles concentrate (age groups 0-2). The majority of spawners inhabits specific offshore areas, here defined as ‘sole sanctuaries', where high concentrations of debris and benthic communities make difficult trawling with rapido. The aim of this study was to evaluate existing spatial management regimes and potential new spatial and temporal closures in the northern and central Adriatic Sea using a simple modelling tool. Two spatial simulations were carried out in order to verify the effectiveness of complementary methods for the management of fisheries: the ban of rapido trawling from October to December within 6 nautical miles and 9 nautical miles of the Italian coast. The focus of the simulation is that the effort of the rapido trawl is moved far from the coast during key sole recruitment periods, when the juveniles are moving from the inshore nursery area toward the offshore feeding grounds. The management scenarios showed that a change in selectivity would lead to a clear increase in the spawning stock biomass and an increase in landings of S. solea in the medium-term. The rapido trawl activity could be managed by using a different logic, bearing in mind that catches and incomes would increase with small changes in the spatial pattern of the fishing effort. The present study highlights the importance of taking into account spatial dimensions of fishing fleets and the possible interactions that can occur between fleets and target

  13. Origin of spinal arteriovenous malformation and normal cord vasculature from a common segmental artery: angiographic and therapeutic considerations

    SciTech Connect

    Doppman, J.L.; Di Chiro, G.; Oldfield, E.H.

    1985-03-01

    The dural type of spinal arteriovenous malformation (AVM) can be cured by excision or by embolization of the nidus. The common origin of the blood supply to the malformation and to the cord from the same segmental artery would profoundly affect therapeutic choices. This anatomic situation was encountered in two of nine such lesions. The angiographic appearance and the importance of recognizing this common origin is discussed.

  14. Ancient Humans Influenced the Current Spatial Genetic Structure of Common Walnut Populations in Asia.

    PubMed

    Pollegioni, Paola; Woeste, Keith E; Chiocchini, Francesca; Del Lungo, Stefano; Olimpieri, Irene; Tortolano, Virginia; Clark, Jo; Hemery, Gabriel E; Mapelli, Sergio; Malvolti, Maria Emilia

    2015-01-01

    Common walnut (Juglans regia L) is an economically important species cultivated worldwide for its wood and nuts. It is generally accepted that J. regia survived and grew spontaneously in almost completely isolated stands in its Asian native range after the Last Glacial Maximum. Despite its natural geographic isolation, J. regia evolved over many centuries under the influence of human management and exploitation. We evaluated the hypothesis that the current distribution of natural genetic resources of common walnut in Asia is, at least in part, the product of ancient anthropogenic dispersal, human cultural interactions, and afforestation. Genetic analysis combined with ethno-linguistic and historical data indicated that ancient trade routes such as the Persian Royal Road and Silk Road enabled long-distance dispersal of J. regia from Iran and Trans-Caucasus to Central Asia, and from Western to Eastern China. Ancient commerce also disrupted the local spatial genetic structure of autochthonous walnut populations between Tashkent and Samarkand (Central-Eastern Uzbekistan), where the northern and central routes of the Northern Silk Road converged. A significant association between ancient language phyla and the genetic structure of walnut populations is reported even after adjustment for geographic distances that could have affected both walnut gene flow and human commerce over the centuries. Beyond the economic importance of common walnut, our study delineates an alternative approach for understanding how the genetic resources of long-lived perennial tree species may be affected by the interaction of geography and human history.

  15. Ancient Humans Influenced the Current Spatial Genetic Structure of Common Walnut Populations in Asia.

    PubMed

    Pollegioni, Paola; Woeste, Keith E; Chiocchini, Francesca; Del Lungo, Stefano; Olimpieri, Irene; Tortolano, Virginia; Clark, Jo; Hemery, Gabriel E; Mapelli, Sergio; Malvolti, Maria Emilia

    2015-01-01

    Common walnut (Juglans regia L) is an economically important species cultivated worldwide for its wood and nuts. It is generally accepted that J. regia survived and grew spontaneously in almost completely isolated stands in its Asian native range after the Last Glacial Maximum. Despite its natural geographic isolation, J. regia evolved over many centuries under the influence of human management and exploitation. We evaluated the hypothesis that the current distribution of natural genetic resources of common walnut in Asia is, at least in part, the product of ancient anthropogenic dispersal, human cultural interactions, and afforestation. Genetic analysis combined with ethno-linguistic and historical data indicated that ancient trade routes such as the Persian Royal Road and Silk Road enabled long-distance dispersal of J. regia from Iran and Trans-Caucasus to Central Asia, and from Western to Eastern China. Ancient commerce also disrupted the local spatial genetic structure of autochthonous walnut populations between Tashkent and Samarkand (Central-Eastern Uzbekistan), where the northern and central routes of the Northern Silk Road converged. A significant association between ancient language phyla and the genetic structure of walnut populations is reported even after adjustment for geographic distances that could have affected both walnut gene flow and human commerce over the centuries. Beyond the economic importance of common walnut, our study delineates an alternative approach for understanding how the genetic resources of long-lived perennial tree species may be affected by the interaction of geography and human history. PMID:26332919

  16. Ancient Humans Influenced the Current Spatial Genetic Structure of Common Walnut Populations in Asia

    PubMed Central

    Pollegioni, Paola; Woeste, Keith E.; Chiocchini, Francesca; Del Lungo, Stefano; Olimpieri, Irene; Tortolano, Virginia; Clark, Jo; Hemery, Gabriel E.; Mapelli, Sergio; Malvolti, Maria Emilia

    2015-01-01

    Common walnut (Juglans regia L) is an economically important species cultivated worldwide for its wood and nuts. It is generally accepted that J. regia survived and grew spontaneously in almost completely isolated stands in its Asian native range after the Last Glacial Maximum. Despite its natural geographic isolation, J. regia evolved over many centuries under the influence of human management and exploitation. We evaluated the hypothesis that the current distribution of natural genetic resources of common walnut in Asia is, at least in part, the product of ancient anthropogenic dispersal, human cultural interactions, and afforestation. Genetic analysis combined with ethno-linguistic and historical data indicated that ancient trade routes such as the Persian Royal Road and Silk Road enabled long-distance dispersal of J. regia from Iran and Trans-Caucasus to Central Asia, and from Western to Eastern China. Ancient commerce also disrupted the local spatial genetic structure of autochthonous walnut populations between Tashkent and Samarkand (Central-Eastern Uzbekistan), where the northern and central routes of the Northern Silk Road converged. A significant association between ancient language phyla and the genetic structure of walnut populations is reported even after adjustment for geographic distances that could have affected both walnut gene flow and human commerce over the centuries. Beyond the economic importance of common walnut, our study delineates an alternative approach for understanding how the genetic resources of long-lived perennial tree species may be affected by the interaction of geography and human history. PMID:26332919

  17. Fine-scale spatial genetic structure of common and declining bumble bees across an agricultural landscape

    PubMed Central

    Dreier, Stephanie; Redhead, John W; Warren, Ian A; Bourke, Andrew F G; Heard, Matthew S; Jordan, William C; Sumner, Seirian; Wang, Jinliang; Carvell, Claire

    2014-01-01

    Land-use changes have threatened populations of many insect pollinators, including bumble bees. Patterns of dispersal and gene flow are key determinants of species' ability to respond to land-use change, but have been little investigated at a fine scale (<10 km) in bumble bees. Using microsatellite markers, we determined the fine-scale spatial genetic structure of populations of four common Bombus species (B. terrestris, B. lapidarius, B. pascuorum and B. hortorum) and one declining species (B. ruderatus) in an agricultural landscape in Southern England, UK. The study landscape contained sown flower patches representing agri-environment options for pollinators. We found that, as expected, the B. ruderatus population was characterized by relatively low heterozygosity, number of alleles and colony density. Across all species, inbreeding was absent or present but weak (FIS = 0.01–0.02). Using queen genotypes reconstructed from worker sibships and colony locations estimated from the positions of workers within these sibships, we found that significant isolation by distance was absent in B. lapidarius, B. hortorum and B. ruderatus. In B. terrestris and B. pascuorum, it was present but weak; for example, in these two species, expected relatedness of queens founding colonies 1 m apart was 0.02. These results show that bumble bee populations exhibit low levels of spatial genetic structure at fine spatial scales, most likely because of ongoing gene flow via widespread queen dispersal. In addition, the results demonstrate the potential for agri-environment scheme conservation measures to facilitate fine-scale gene flow by creating a more even distribution of suitable habitats across landscapes. PMID:24980963

  18. Common Evolutionary Origin for the Rotor Domain of Rotary Atpases and Flagellar Protein Export Apparatus

    PubMed Central

    Kishikawa, Jun-ichi; Ibuki, Tatsuya; Nakamura, Shuichi; Nakanishi, Astuko; Minamino, Tohru; Miyata, Tomoko; Namba, Keiichi; Konno, Hiroki; Ueno, Hiroshi; Imada, Katsumi; Yokoyama, Ken

    2013-01-01

    The V1- and F1- rotary ATPases contain a rotor that rotates against a catalytic A3B3 or α3β3 stator. The rotor F1-γ or V1-DF is composed of both anti-parallel coiled coil and globular-loop parts. The bacterial flagellar type III export apparatus contains a V1/F1-like ATPase ring structure composed of FliI6 homo-hexamer and FliJ which adopts an anti-parallel coiled coil structure without the globular-loop part. Here we report that FliJ of Salmonella enterica serovar Typhimurium shows a rotor like function in Thermus thermophilus A3B3 based on both biochemical and structural analysis. Single molecular analysis indicates that an anti-parallel coiled-coil structure protein (FliJ structure protein) functions as a rotor in A3B3. A rotary ATPase possessing an F1-γ-like protein generated by fusion of the D and F subunits of V1 rotates, suggesting F1-γ could be the result of a fusion of the genes encoding two separate rotor subunits. Together with sequence comparison among the globular part proteins, the data strongly suggest that the rotor domains of the rotary ATPases and the flagellar export apparatus share a common evolutionary origin. PMID:23724081

  19. Clonal analysis reveals a common origin between nonsomite-derived neck muscles and heart myocardium.

    PubMed

    Lescroart, Fabienne; Hamou, Wissam; Francou, Alexandre; Théveniau-Ruissy, Magali; Kelly, Robert G; Buckingham, Margaret

    2015-02-01

    Neck muscles constitute a transition zone between somite-derived skeletal muscles of the trunk and limbs, and muscles of the head, which derive from cranial mesoderm. The trapezius and sternocleidomastoid neck muscles are formed from progenitor cells that have expressed markers of cranial pharyngeal mesoderm, whereas other muscles in the neck arise from Pax3-expressing cells in the somites. Mef2c-AHF-Cre genetic tracing experiments and Tbx1 mutant analysis show that nonsomitic neck muscles share a gene regulatory network with cardiac progenitor cells in pharyngeal mesoderm of the second heart field (SHF) and branchial arch-derived head muscles. Retrospective clonal analysis shows that this group of neck muscles includes laryngeal muscles and a component of the splenius muscle, of mixed somitic and nonsomitic origin. We demonstrate that the trapezius muscle group is clonally related to myocardium at the venous pole of the heart, which derives from the posterior SHF. The left clonal sublineage includes myocardium of the pulmonary trunk at the arterial pole of the heart. Although muscles derived from the first and second branchial arches also share a clonal relationship with different SHF-derived parts of the heart, neck muscles are clonally distinct from these muscles and define a third clonal population of common skeletal and cardiac muscle progenitor cells within cardiopharyngeal mesoderm. By linking neck muscle and heart development, our findings highlight the importance of cardiopharyngeal mesoderm in the evolution of the vertebrate heart and neck and in the pathophysiology of human congenital disease.

  20. Clonal analysis reveals a common origin between nonsomite-derived neck muscles and heart myocardium.

    PubMed

    Lescroart, Fabienne; Hamou, Wissam; Francou, Alexandre; Théveniau-Ruissy, Magali; Kelly, Robert G; Buckingham, Margaret

    2015-02-01

    Neck muscles constitute a transition zone between somite-derived skeletal muscles of the trunk and limbs, and muscles of the head, which derive from cranial mesoderm. The trapezius and sternocleidomastoid neck muscles are formed from progenitor cells that have expressed markers of cranial pharyngeal mesoderm, whereas other muscles in the neck arise from Pax3-expressing cells in the somites. Mef2c-AHF-Cre genetic tracing experiments and Tbx1 mutant analysis show that nonsomitic neck muscles share a gene regulatory network with cardiac progenitor cells in pharyngeal mesoderm of the second heart field (SHF) and branchial arch-derived head muscles. Retrospective clonal analysis shows that this group of neck muscles includes laryngeal muscles and a component of the splenius muscle, of mixed somitic and nonsomitic origin. We demonstrate that the trapezius muscle group is clonally related to myocardium at the venous pole of the heart, which derives from the posterior SHF. The left clonal sublineage includes myocardium of the pulmonary trunk at the arterial pole of the heart. Although muscles derived from the first and second branchial arches also share a clonal relationship with different SHF-derived parts of the heart, neck muscles are clonally distinct from these muscles and define a third clonal population of common skeletal and cardiac muscle progenitor cells within cardiopharyngeal mesoderm. By linking neck muscle and heart development, our findings highlight the importance of cardiopharyngeal mesoderm in the evolution of the vertebrate heart and neck and in the pathophysiology of human congenital disease. PMID:25605943

  1. Hemoglobin E: a common hemoglobinopathy among children of Southeast Asian origin.

    PubMed

    Katsanis, E; Luke, K H; Hsu, E; Yates, J R

    1987-07-01

    With the recent immigration of Southeast Asians to Canada, hemoglobin E has become a frequent diagnosis. The clinical and hematologic findings in 42 children (mean age 4.3 years) with hemoglobin E are presented. There were 33 heterozygotes (having hemoglobin E trait), 6 homozygotes (having hemoglobin EE) and 3 double heterozygotes (having hemoglobin E-beta-thalassemia). The heterozygotes had low-normal hemoglobin levels and mean corpuscular volumes; coexisting iron deficiency, present in 62% of these children, resulted in substantially lower hemoglobin levels, very low mean corpuscular volumes and lower than expected levels of hemoglobin E on electrophoresis. The children with hemoglobin EE were only slightly anemic, but those with hemoglobin E-beta-thalassemia had severe anemia and required long-term transfusion therapy. Nutritional factors and parasitic infestations were the main causes of iron depletion, which was common, particularly in children less than 2 years old (87%). Physicians of patients of Southeast Asian origin should be aware of the clinical and hematologic presentation of these hemoglobinopathies.

  2. Indications for common origin and gravitational interaction in three binary LMC clusters

    NASA Technical Reports Server (NTRS)

    Kontizas, E.; Kontizas, M.; Michalitsianos, A.

    1993-01-01

    Three close pair clusters of the LMC, NGC 2006/SL 538, NGC 2011 a/b, and NGC 2042 a/b, have been studied in order to establish their binarity. The stellar content in the outer region of each cluster has been investigated by means of low resolution objective UK Schmidt prism spectra, the cores of the clusters have been examined using low resolution integrated IUE spectra, whereas their density profiles and their observed dynamical parameters have been derived by means of star counts. The integrated spectra of their cores and the stellar content of their outer cluster regions have shown a common origin and a very young age (less than 2 x 10 exp 7 yr) for each member of the pairs, whereas their dynamical study has shown that they are gravitationally interacting. Comparing the age of their stellar content with their dynamical and relaxation times, it has been found that these clusters are physically associated and had no time to relax by stellar encounters, no time to merge, and no time to be destroyed by dynamical friction.

  3. [Channel Selection for Multi-class Motor Imagery Based on Common Spatial Pattern].

    PubMed

    Zhou, Bangyan; Wu, Xiaopei; Lu, Zhao; Zhang, Lei; Guo, Xianjing; Zhang, Chao

    2015-06-01

    High-density channels are often used to acquire electroencephalogram (EEG) spatial information in different cortical regions of the brain in brain-computer interface (BCI) systems. However, applying excessive channels is inconvenient for signal acquisition, and it may bring artifacts. To avoid these defects, the common spatial pattern (CSP) algorithm was used for channel selection and a selection criteria based on norm-2 is proposed in this paper. The channels with the highest M scores were selected for the purpose of using fewer channels to acquire similar rate with high density channels. The Dataset III a from BCI competition 2005 were used for comparing the classification accuracies of three motor imagery between whole channels and the selected channels with the present proposed method. The experimental results showed that the classification accuracies of three subjects using the 20 channels selected with the present method were all higher than the classification accuracies using all 60 channels, which convinced that our method could be more effective and useful. PMID:26485971

  4. Common Spatial Pattern Patches: online evaluation on BCI-naive users.

    PubMed

    Sannelli, Claudia; Vidaurre, Carmen; Müller, Klaus-Robert; Blankertz, Benjamin

    2012-01-01

    Brain-Computer Interfaces (BCI) based on the voluntary modulation of sensorimotor rhythms (SMRs) induced by motor imagery are very prominent because allow a continuous control of the external device. Nevertheless, the design of a SMR-based BCI system that provides every user with a reliable BCI control from the first session, i.e., without extensive training, is still a big challenge. Considerable advances in this direction have been made by the machine learning co-adaptive calibration approach, which combines online adaptation techniques with subject learning in order to offer the user a feedback from the beginning of the experiment. Recently, based on offline analyses, we proposed the novel Common Spatial Patterns Patches (CSPP) technique as a good candidate to improve the co-adaptive calibration. CSPP is an ensemble of localized spatial filters, each of them optimized on subject-specific data by CSP analysis. Here, the evaluation of CSPP in online operation is presented for the first time. Results on three BCI-naive participants show indeed promising results. All three users reach the threshold criterion of 70% accuracy within one session, even one candidate for whom the weak SMR at rest predicted deficient BCI control. Concurrent recordings of the SMR during a relax condition as well as the course of BCI performance indicate a clear learning effect.

  5. Spatial and ontogenetic variability in the chemical composition of juvenile common sole ( Solea solea) otoliths

    NASA Astrophysics Data System (ADS)

    Tanner, S. E.; Vasconcelos, R. P.; Reis-Santos, P.; Cabral, H. N.; Thorrold, S. R.

    2011-01-01

    A description of variations in the chemical composition of fish otoliths at different spatial scales and life history stages is a prerequisite for their use as natural tags in fish population connectivity and migration studies. Otolith geochemistry of juvenile common sole ( Solea solea), a marine migrant species collected in six Portuguese estuaries was examined. Elemental ratios (Mg:Ca, Mn:Ca, Cu:Ca, Sr:Ca, Ba:Ca, Pb:Ca) were analysed in two zones of the right otolith (corresponding to late larval and juvenile stages) using laser ablation inductively coupled plasma mass spectrometry (ICP-MS). Stable carbon and oxygen isotopes (δ 13C and δ 18O) were determined in left otoliths using isotopic ratio monitoring mass spectrometry (irm-MS). Significant differences in otolith geochemical signatures were found among estuaries, among sites within estuaries and between otolith zones. Several elemental ratios (Mg:Ca, Mn:Ca, Cu:Ca and Sr:Ca) showed consistent patterns between otolith zones and were likely influenced by environmental factors and ontogenetic effects associated with physiological changes during metamorphosis. Assignment of individuals to their collection estuary based on the otolith geochemical signatures was more accurate at the site level (81%) than among estuaries (69%). Site temperature was not correlated with any of the elemental or isotope ratios, but salinity was significantly correlated with Ba:Ca, δ 13C and δ 18O. Observed spatial variations among estuaries and sites within estuaries indicate that geochemical signatures in otoliths are accurate natural tags of estuarine habitat in common sole. Nevertheless, the significant variations observed between otolith zones should be taken into account in the design of population connectivity studies.

  6. Hierarchical spatial genetic structure of Common Eiders (Somateria Mollissima) breeding along a migratory corridor

    USGS Publications Warehouse

    Sonsthagen, S.A.; Talbot, S.L.; Lanctot, Richard B.; Scribner, K.T.; McCracken, K.G.

    2009-01-01

    Documentation of spatial genetic discordance among breeding populations of Arctic-nesting avian species is important, because anthropogenic change is altering environmental linkages at micro- and macrogeographic scales. We estimated levels of population subdivision within Pacific Common Eiders (Somateria mollissima v-nigrum) breeding on 12 barrier islands in the western Beaufort Sea, Alaska, using molecular markers and capture-mark-recapture (CMR) data. Common Eider populations were genetically structured on a microgeographic scale. Regional comparisons between populations breeding on island groups separated by 90 km (Mikkelsen Bay and Simpson Lagoon) revealed structuring at 14 microsatellite loci (FST = 0.004, P < 0.01), a nuclear intron (FST = 0.022, P = 0.02), and mitochondrial DNA (??ST = 0.082, P < 0.05). The CMR data (n = 34) did not indicate female dispersal between island groups. Concordance between genetic and CMR data indicates that females breeding in the western Beaufort Sea are strongly philopatric to island groups rather than to a particular island. Despite the apparent high site fidelity of females, coalescence-based models of gene flow suggest that asymmetrical western dispersal occurs between island groups and is likely mediated by Mikkelsen Bay females stopping early on spring migration at Simpson Lagoon to breed. Alternatively, late-arriving females may be predisposed to nest in Simpson Lagoon because of the greater availability and wider distribution of nesting habitat. Our results indicate that genetic discontinuities, mediated by female philopatry, can exist at microgeographic scales along established migratory corridors. ?? The American Ornithologists' Union, 2009.

  7. Intrinsic Difficulties in Learning Common Greek-Originated English Words: The Case of Pluralization

    ERIC Educational Resources Information Center

    Kavakli, Nurdan

    2016-01-01

    Knowing the origin of a language helps us to determine the historical background of that language. As language itself is such a system of a society that is continuously evolving as that aforementioned society learns and technologically develops along with its roots or origins. Like many other languages, English is also a language that has roots or…

  8. Primary-Grade Students' Knowledge and Thinking about Food Production and the Origins of Common Foods

    ERIC Educational Resources Information Center

    Brophy, Jere; Alleman, Janet; O'Mahony, Carolyn

    2003-01-01

    Individual interviews were conducted with 96 K-3 students, stratified according to grade level, achievement level, and gender. The students were asked to explain land-to-hand progressions involved in bringing several common foods to our tables, identify products derived from common farm animals, explain why a pound of cereal costs more than a…

  9. Spatial Dynamics of Human-Origin H1 Influenza A Virus in North American Swine

    PubMed Central

    Nelson, Martha I.; Lemey, Philippe; Tan, Yi; Vincent, Amy; Lam, Tommy Tsan-Yuk; Detmer, Susan; Viboud, Cécile; Suchard, Marc A.; Rambaut, Andrew; Holmes, Edward C.; Gramer, Marie

    2011-01-01

    The emergence and rapid global spread of the swine-origin H1N1/09 pandemic influenza A virus in humans underscores the importance of swine populations as reservoirs for genetically diverse influenza viruses with the potential to infect humans. However, despite their significance for animal and human health, relatively little is known about the phylogeography of swine influenza viruses in the United States. This study utilizes an expansive data set of hemagglutinin (HA1) sequences (n = 1516) from swine influenza viruses collected in North America during the period 2003–2010. With these data we investigate the spatial dissemination of a novel influenza virus of the H1 subtype that was introduced into the North American swine population via two separate human-to-swine transmission events around 2003. Bayesian phylogeographic analysis reveals that the spatial dissemination of this influenza virus in the US swine population follows long-distance swine movements from the Southern US to the Midwest, a corn-rich commercial center that imports millions of swine annually. Hence, multiple genetically diverse influenza viruses are introduced and co-circulate in the Midwest, providing the opportunity for genomic reassortment. Overall, the Midwest serves primarily as an ecological sink for swine influenza in the US, with sources of virus genetic diversity instead located in the Southeast (mainly North Carolina) and South-central (mainly Oklahoma) regions. Understanding the importance of long-distance pig transportation in the evolution and spatial dissemination of the influenza virus in swine may inform future strategies for the surveillance and control of influenza, and perhaps other swine pathogens. PMID:21695237

  10. Spatial dynamics of human-origin H1 influenza A virus in North American swine.

    PubMed

    Nelson, Martha I; Lemey, Philippe; Tan, Yi; Vincent, Amy; Lam, Tommy Tsan-Yuk; Detmer, Susan; Viboud, Cécile; Suchard, Marc A; Rambaut, Andrew; Holmes, Edward C; Gramer, Marie

    2011-06-01

    The emergence and rapid global spread of the swine-origin H1N1/09 pandemic influenza A virus in humans underscores the importance of swine populations as reservoirs for genetically diverse influenza viruses with the potential to infect humans. However, despite their significance for animal and human health, relatively little is known about the phylogeography of swine influenza viruses in the United States. This study utilizes an expansive data set of hemagglutinin (HA1) sequences (n = 1516) from swine influenza viruses collected in North America during the period 2003-2010. With these data we investigate the spatial dissemination of a novel influenza virus of the H1 subtype that was introduced into the North American swine population via two separate human-to-swine transmission events around 2003. Bayesian phylogeographic analysis reveals that the spatial dissemination of this influenza virus in the US swine population follows long-distance swine movements from the Southern US to the Midwest, a corn-rich commercial center that imports millions of swine annually. Hence, multiple genetically diverse influenza viruses are introduced and co-circulate in the Midwest, providing the opportunity for genomic reassortment. Overall, the Midwest serves primarily as an ecological sink for swine influenza in the US, with sources of virus genetic diversity instead located in the Southeast (mainly North Carolina) and South-central (mainly Oklahoma) regions. Understanding the importance of long-distance pig transportation in the evolution and spatial dissemination of the influenza virus in swine may inform future strategies for the surveillance and control of influenza, and perhaps other swine pathogens.

  11. Fragility of estimated spatial temperature patterns in climate field reconstructions of the Common Era

    NASA Astrophysics Data System (ADS)

    Wang, J.; Emile-Geay, J.; Vaccaro, A.; Guillot, D.; Rajaratnam, B.

    2013-12-01

    Climate field reconstructions (CFRs) of the Common Era can provide insight into dynamical causes of low-frequency climate variability. For instance, the Mann et al. [2009] study found that the reconstructed sea-surface temperature difference between the Medieval Climate Anomaly and the Little Ice Age (hereinafter MCA - LIA) is marked by a La-Niña like pattern over the tropical Pacific, and proposed dynamical explanations for this observation. In this talk, we assess the robustness of such spatial patterns. First we examine the impact of the CFR methodology. Starting with the network of Mann et al. [2008] (hereinafter M08), we perform temperature reconstruction using four different CFR techniques: RegEM-TTLS [Schneider, 2001], the Mann et al. [2009] implementation of RegEM-TTLS (hereinafter M09), Canonical Correlation Analysis [Smerdon et al., 2010, CCA] and GraphEM [Guillot et al., in revision]. We find that results are greatly method-dependent even with identical inputs. While the M09 reconstruction displays a La Niña-like pattern over the tropical Pacific for MCA - LIA, CCA gives a neutral pattern, RegEM-TTLS and GraphEM both display El Niño-like pattern but show different amplitudes. Next we assess a given CFR technique's sensitivity to the selection of inputs. Proxies are selected based on the statistical significance of their correlations with HadCRUT3v annual temperature. A multiple hypothesis test [Ventura et al., 2004] is conducted to preclude spurious correlations. This choice has a large impact on resulting CFRs. In particular, whether the correlation is calculated between local or regional temperature-proxy pairs determines the number of significant records included in the proxy network. This in turn greatly affects the reconstructed spatial patterns and the Northern Hemispheric mean temperature time series with all CFR methods investigated. In order to further analyze CFRs' sensitivities to the abovementioned procedural choices, we assemble an

  12. Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies.

    PubMed

    Longet, David; Archibald, John M; Keeling, Patrick J; Pawlowski, Jan

    2003-11-01

    Phylogenetic analysis of small and large subunits of rDNA genes suggested that Foraminifera originated early in the evolution of eukaryotes, preceding the origin of other rhizopodial protists. This view was recently challenged by the analysis of actin and ubiquitin protein sequences, which revealed a close relationship between Foraminifera and Cercozoa, an assemblage of various filose amoebae and amoeboflagellates that branch in the so-called crown of the SSU rDNA tree of eukaryotes. To further test this hypothesis, we sequenced a fragment of the largest subunit of the RNA polymerase II (RPB1) from five foraminiferans, two cercozoans and the testate filosean Gromia oviformis. Analysis of our data confirms a close relationship between Foraminifera and Cercozoa and points to Gromia as the closest relative of Foraminifera.

  13. Common origin of the high energy astronomical gamma rays, neutrinos and cosmic ray positrons?

    NASA Astrophysics Data System (ADS)

    Dado, Shlomo; Dar, Arnon

    2016-03-01

    We show that the observed fluxes, spectra and sky distributions of the high energy astronomical neutrinos, gamma rays and cosmic ray positrons satisfy the simple relations expected from their common production in hadronic collisions in/near source of high energy cosmic rays with diffuse matter.

  14. SPATIAL EXPLICIT POPULATION MODELS FOR RISK ASSESSMENT: COMMON LOONS AND MERCURY AS A CASE STUDY

    EPA Science Inventory

    Factors that significantly impact population dynamics, such as resource availability and exposure to stressors, frequently vary over space and thereby determine the heterogeneous spatial distributions of organisms. Considering this fact, the US Environmental Protection Agency's ...

  15. Perinatal inflammation: a common factor in the early origins of cardiovascular disease?

    PubMed

    Nguyen, Maria U; Wallace, Megan J; Pepe, Salvatore; Menheniott, Trevelyan R; Moss, Timothy J; Burgner, David

    2015-10-01

    Cardiovascular disease continues to be the leading cause of global morbidity and mortality. Traditional risk factors account for only part of the attributable risk. The origins of atherosclerosis are in early life, a potential albeit largely unrecognized window of opportunity for early detection and treatment of subclinical cardiovascular disease. There are robust epidemiological data indicating that poor intrauterine growth and/or prematurity, and perinatal factors such as maternal hypercholesterolaemia, smoking, diabetes and obesity, are associated with adverse cardiovascular intermediate phenotypes in childhood and adulthood. Many of these early-life risk factors result in a heightened inflammatory state. Inflammation is a central mechanism in the development of atherosclerosis and cardiovascular disease, but few studies have investigated the role of overt perinatal infection and inflammation (chorioamnionitis) as a potential contributor to cardiovascular risk. Limited evidence from human and experimental models suggests an association between chorioamnionitis and cardiac and vascular dysfunction. Early life inflammatory events may be an important mechanism in the early development of cardiovascular risk and may provide insights into the associations between perinatal factors and adult cardiovascular disease. This review aims to summarise current data on the early life origins of atherosclerosis and cardiovascular disease, with particular focus on perinatal inflammation.

  16. Common Oncogenic Mutations Are Infrequent in Oral Squamous Cell Carcinoma of Asian Origin

    PubMed Central

    Zanaruddin, Sharifah Nurain Syed; Yee, Pei San; Hor, Seen Yii; Kong, Yink Heay; Ghani, Wan Maria Nabillah Wan Abd; Mustafa, Wan Mahadzir Wan; Zain, Rosnah Binti; Prime, Stephen S.; Rahman, Zainal Ariff Abd; Cheong, Sok-Ching

    2013-01-01

    Objectives The frequency of common oncogenic mutations and TP53 was determined in Asian oral squamous cell carcinoma (OSCC). Materials and Methods The OncoCarta™ panel v1.0 assay was used to characterize oncogenic mutations. In addition, exons 4-11 of the TP53 gene were sequenced. Statistical analyses were conducted to identify associations between mutations and selected clinico-pathological characteristics and risk habits. Results Oncogenic mutations were detected in PIK3CA (5.7%) and HRAS (2.4%). Mutations in TP53 were observed in 27.7% (31/112) of the OSCC specimens. Oncogenic mutations were found more frequently in non-smokers (p = 0.049) and TP53 truncating mutations were more common in patients with no risk habits (p = 0.019). Patients with mutations had worse overall survival compared to those with absence of mutations; and patients who harbored DNA binding domain (DBD) and L2/L3/LSH mutations showed a worse survival probability compared to those patients with wild type TP53. The majority of the oncogenic and TP53 mutations were G:C > A:T and A:T > G:C base transitions, regardless of the different risk habits. Conclusion Hotspot oncogenic mutations which are frequently present in common solid tumors are exceedingly rare in OSCC. Despite differences in risk habit exposure, the mutation frequency of PIK3CA and HRAS in Asian OSCC were similar to that reported in OSCC among Caucasians, whereas TP53 mutations rates were significantly lower. The lack of actionable hotspot mutations argue strongly for the need to comprehensively characterize gene mutations associated with OSCC for the development of new diagnostic and therapeutic tools. PMID:24224046

  17. [Tones and being tuned. Suggestions for the common origins of music therapy and hypnotherapy].

    PubMed

    Vas, József Pál

    2013-01-01

    Sound vibrations are viewed to play an important role in embryonic development. Before the cochlea evolves, the haptic and mechanic skin-receptors detect the amniotic fluid's pressure-waves produced by sounds in uterus. Touching and hearing are seen as primordial and the most relevant stimuli both of mother-fetus attunement and development of fetal nervous system. Man is attuned to environmental stimuli, mainly to human speaking since the embryonic period. Attunement is secured by energy zones (chakras) circling around body. It is considered to be base of our music capacity. Origin of hypnotic susceptibility is viewed as being in embryonic period as well. Movements, experiences supposed, bonding and communication patterns of both of fetus and hypnotized person are suggested to show similarities. Prenatal audio-somatosensory stimulating program facilitates newborn babies' cognitive, emotional and bonding capacities. As a matter of fact, by virtue of regressive fetus-like experiences, hypnotherapy contributes to the restart of personality development halted by trauma.

  18. Common Origin of Four Diverse Families of Large Eukaryotic DNA Viruses

    PubMed Central

    Iyer, Lakshminarayan M.; Aravind, L.; Koonin, Eugene V.

    2001-01-01

    Comparative analysis of the protein sequences encoded in the genomes of three families of large DNA viruses that replicate, completely or partly, in the cytoplasm of eukaryotic cells (poxviruses, asfarviruses, and iridoviruses) and phycodnaviruses that replicate in the nucleus reveals 9 genes that are shared by all of these viruses and 22 more genes that are present in at least three of the four compared viral families. Although orthologous proteins from different viral families typically show weak sequence similarity, because of which some of them have not been identified previously, at least five of the conserved genes appear to be synapomorphies (shared derived characters) that unite these four viral families, to the exclusion of all other known viruses and cellular life forms. Cladistic analysis with the genes shared by at least two viral families as evolutionary characters supports the monophyly of poxviruses, asfarviruses, iridoviruses, and phycodnaviruses. The results of genome comparison allow a tentative reconstruction of the ancestral viral genome and suggest that the common ancestor of all of these viral families was a nucleocytoplasmic virus with an icosahedral capsid, which encoded complex systems for DNA replication and transcription, a redox protein involved in disulfide bond formation in virion membrane proteins, and probably inhibitors of apoptosis. The conservation of the disulfide-oxidoreductase, a major capsid protein, and two virion membrane proteins indicates that the odd-shaped virions of poxviruses have evolved from the more common icosahedral virion seen in asfarviruses, iridoviruses, and phycodnaviruses. PMID:11689653

  19. Fine-scale spatial distribution of the common lugworm Arenicola marina, and effects of intertidal clam fishing

    NASA Astrophysics Data System (ADS)

    Boldina, Inna; Beninger, Peter G.

    2014-04-01

    Despite its ubiquity and its role as an ecosystem engineer on temperate intertidal mudflats, little is known of the spatial ecology of the lugworm Arenicola marina. We estimated lugworm densities and analyzed the spatial distribution of A. marina on a French Atlantic mudflat subjected to long-term clam digging activities, and compared these to a nearby pristine reference mudflat, using a combination of geostatistical techniques: point-pattern analysis, autocorrelation, and wavelet analysis. Lugworm densities were an order of magnitude greater at the reference site. Although A. marina showed an aggregative spatial distribution at both sites, the characteristics and intensity of aggregation differed markedly between sites. The reference site showed an inhibition process (regular distribution) at distances <7.5 cm, whereas the impacted site showed a random distribution at this scale. At distances from 15 cm to several tens of meters, the spatial distribution of A. marina was clearly aggregated at both sites; however, the autocorrelation strength was much weaker at the impacted site. In addition, the non-impacted site presented multi-scale spatial distribution, which was not evident at the impacted site. The differences observed between the spatial distributions of the fishing-impacted vs. the non-impacted site reflect similar findings for other components of these two mudflat ecosystems, suggesting common community-level responses to prolonged mechanical perturbation: a decrease in naturally-occurring aggregation. This change may have consequences for basic biological characteristics such as reproduction, recruitment, growth, and feeding.

  20. Isolation of Left Common Carotid Artery with Its Origin Proximal to Patent Ductus Arteriosus Presenting in Adult Age

    PubMed Central

    Joshi, Anagha R.; Joshi, Saurabh; Kale, Kiran; Jain, Rahul; Bava, Jernail Singh

    2016-01-01

    Anomalies of aortic arch are a common occurrence. Such anomalies of right sided aortic arch with its various branching patterns are of clinical importance. Rarer anomalies include isolation (deficient connection) of either left subclavian artery or left common carotid artery; that is, they do not have their origin from aorta or its major branches. We present a case of an 18-year-old male who presented with gradual onset pulsatile swelling with bruit in neck on left side and was evaluated by CT brain and neck angiography. CT angiography revealed right sided aortic arch with aberrant left subclavian artery and isolated left common carotid artery. Very few cases of such an anomaly have been documented in the literature but none in an adult. PMID:27213071

  1. Common origins of RNA, protein and lipid precursors in a cyanosulfidic protometabolism

    NASA Astrophysics Data System (ADS)

    Patel, Bhavesh H.; Percivalle, Claudia; Ritson, Dougal J.; Duffy, Colm D.; Sutherland, John D.

    2015-04-01

    A minimal cell can be thought of as comprising informational, compartment-forming and metabolic subsystems. To imagine the abiotic assembly of such an overall system, however, places great demands on hypothetical prebiotic chemistry. The perceived differences and incompatibilities between these subsystems have led to the widely held assumption that one or other subsystem must have preceded the others. Here we experimentally investigate the validity of this assumption by examining the assembly of various biomolecular building blocks from prebiotically plausible intermediates and one-carbon feedstock molecules. We show that precursors of ribonucleotides, amino acids and lipids can all be derived by the reductive homologation of hydrogen cyanide and some of its derivatives, and thus that all the cellular subsystems could have arisen simultaneously through common chemistry. The key reaction steps are driven by ultraviolet light, use hydrogen sulfide as the reductant and can be accelerated by Cu(I)-Cu(II) photoredox cycling.

  2. Common origins of RNA, protein and lipid precursors in a cyanosulfidic protometabolism

    PubMed Central

    Patel, Bhavesh H.; Percivalle, Claudia; Ritson, Dougal J.; Duffy, Colm. D.; Sutherland, John D.

    2015-01-01

    A minimal cell can be thought of as comprising informational, compartment-forming and metabolic subsystems. Imagining the abiotic assembly of such an overall system, however, places great demands on hypothetical prebiotic chemistry. The perceived differences and incompatibilities between these subsystems have led to the widely held assumption that one or other subsystem must have preceded the others. Here, we have experimentally investigated the validity of this assumption by examining the assembly of various biomolecular building blocks from prebiotically plausible intermediates and one-carbon feedstock molecules. We show that precursors of ribonucleotides, amino acids and lipids can all be derived by reductive homologation of hydrogen cyanide and some of its derivatives and thus that all the cellular subsystems could have arisen simultaneously through common chemistry. The key reaction steps are driven by UV light, use hydrogen sulfide as reductant and can be accelerated by Cu(I)-Cu(II) photoredox cycling. PMID:25803468

  3. Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin

    SciTech Connect

    Leiman, Petr G.; Basler, Marek; Ramagopal, Udupi A.; Bonanno, Jeffrey B.; Sauder, J. Michael; Pukatzki, Stefan; Burley, Stephen K.; Almo, Steven C.; Mekalanos, John J.

    2009-04-22

    Protein secretion is a common property of pathogenic microbes. Gram-negative bacterial pathogens use at least 6 distinct extracellular protein secretion systems to export proteins through their multilayered cell envelope and in some cases into host cells. Among the most widespread is the newly recognized Type VI secretion system (T6SS) which is composed of 15--20 proteins whose biochemical functions are not well understood. Using crystallographic, biochemical, and bioinformatic analyses, we identified 3 T6SS components, which are homologous to bacteriophage tail proteins. These include the tail tube protein; the membrane-penetrating needle, situated at the distal end of the tube; and another protein associated with the needle and tube. We propose that T6SS is a multicomponent structure whose extracellular part resembles both structurally and functionally a bacteriophage tail, an efficient machine that translocates proteins and DNA across lipid membranes into cells.

  4. Common origins of RNA, protein and lipid precursors in a cyanosulfidic protometabolism.

    PubMed

    Patel, Bhavesh H; Percivalle, Claudia; Ritson, Dougal J; Duffy, Colm D; Sutherland, John D

    2015-04-01

    A minimal cell can be thought of as comprising informational, compartment-forming and metabolic subsystems. To imagine the abiotic assembly of such an overall system, however, places great demands on hypothetical prebiotic chemistry. The perceived differences and incompatibilities between these subsystems have led to the widely held assumption that one or other subsystem must have preceded the others. Here we experimentally investigate the validity of this assumption by examining the assembly of various biomolecular building blocks from prebiotically plausible intermediates and one-carbon feedstock molecules. We show that precursors of ribonucleotides, amino acids and lipids can all be derived by the reductive homologation of hydrogen cyanide and some of its derivatives, and thus that all the cellular subsystems could have arisen simultaneously through common chemistry. The key reaction steps are driven by ultraviolet light, use hydrogen sulfide as the reductant and can be accelerated by Cu(I)-Cu(II) photoredox cycling.

  5. Common Spatial Organization of Number and Emotional Expression: A Mental Magnitude Line

    ERIC Educational Resources Information Center

    Holmes, Kevin J.; Lourenco, Stella F.

    2011-01-01

    Converging behavioral and neural evidence suggests that numerical representations are mentally organized in left-to-right orientation. Here we show that this format of spatial organization extends to emotional expression. In Experiment 1, right-side responses became increasingly faster as number (represented by Arabic numerals) or happiness…

  6. [Tones and being tuned. Suggestions for the common origins of music therapy and hypnotherapy].

    PubMed

    Vas, József Pál

    2013-01-01

    Sound vibrations are viewed to play an important role in embryonic development. Before the cochlea evolves, the haptic and mechanic skin-receptors detect the amniotic fluid's pressure-waves produced by sounds in uterus. Touching and hearing are seen as primordial and the most relevant stimuli both of mother-fetus attunement and development of fetal nervous system. Man is attuned to environmental stimuli, mainly to human speaking since the embryonic period. Attunement is secured by energy zones (chakras) circling around body. It is considered to be base of our music capacity. Origin of hypnotic susceptibility is viewed as being in embryonic period as well. Movements, experiences supposed, bonding and communication patterns of both of fetus and hypnotized person are suggested to show similarities. Prenatal audio-somatosensory stimulating program facilitates newborn babies' cognitive, emotional and bonding capacities. As a matter of fact, by virtue of regressive fetus-like experiences, hypnotherapy contributes to the restart of personality development halted by trauma. PMID:23880513

  7. Ancestry Informative Marker Sets for Determining Continental Origin and Admixture Proportions in Common Populations in America

    PubMed Central

    Kosoy, Roman; Nassir, Rami; Tian, Chao; White, Phoebe A; Butler, Lesley M.; Silva, Gabriel; Kittles, Rick; Alarcon-Riquelme, Marta E.; Gregersen, Peter K.; Belmont, John W.; De La Vega, Francisco M.; Seldin, Michael F.

    2011-01-01

    To provide a resource for assessing continental ancestry in a wide variety of genetic studies we identified, validated and characterized a set of 128 ancestry informative markers (AIMs). The markers were chosen for informativeness, genome-wide distribution, and genotype reproducibility on two platforms (TaqMan® assays and Illumina arrays). We analyzed genotyping data from 825 subjects with diverse ancestry, including European, East Asian, Amerindian, African, South Asian, Mexican, and Puerto Rican. A comprehensive set of 128 AIMs and subsets as small as 24 AIMs are shown to be useful tools for ascertaining the origin of subjects from particular continents, and to correct for population stratification in admixed population sample sets. Our findings provide general guidelines for the application of specific AIM subsets as a resource for wide application. We conclude that investigators can use TaqMan assays for the selected AIMs as a simple and cost efficient tool to control for differences in continental ancestry when conducting association studies in ethnically diverse populations. PMID:18683858

  8. Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America.

    PubMed

    Kosoy, Roman; Nassir, Rami; Tian, Chao; White, Phoebe A; Butler, Lesley M; Silva, Gabriel; Kittles, Rick; Alarcon-Riquelme, Marta E; Gregersen, Peter K; Belmont, John W; De La Vega, Francisco M; Seldin, Michael F

    2009-01-01

    To provide a resource for assessing continental ancestry in a wide variety of genetic studies, we identified, validated, and characterized a set of 128 ancestry informative markers (AIMs). The markers were chosen for informativeness, genome-wide distribution, and genotype reproducibility on two platforms (TaqMan assays and Illumina arrays). We analyzed genotyping data from 825 subjects with diverse ancestry, including European, East Asian, Amerindian, African, South Asian, Mexican, and Puerto Rican. A comprehensive set of 128 AIMs and subsets as small as 24 AIMs are shown to be useful tools for ascertaining the origin of subjects from particular continents, and to correct for population stratification in admixed population sample sets. Our findings provide general guidelines for the application of specific AIM subsets as a resource for wide application. We conclude that investigators can use TaqMan assays for the selected AIMs as a simple and cost efficient tool to control for differences in continental ancestry when conducting association studies in ethnically diverse populations.

  9. The spatial origin of current noise in semiconductor devices in the framework of semiclassical transport

    NASA Astrophysics Data System (ADS)

    Korman, C. E.; Noaman, B. A.

    2010-10-01

    A new model to semiconductor device electronic noise is presented in the framework of semiclassical transport theory. The salient feature of this model is that it connects the current noise characteristics directly to the physics of scattering of the semiclassical transport theory and makes no additional assumption regarding the nature of noise. Employing this approach, this work investigates the spatial origin of the current noise across two semiconductor structures. In this approach the terminal current noise is directly related to carrier scattering inside the device, which is accounted for in the Boltzmann transport equation (BTE), without the need to add Langevin noise terms to the calculations. Accordingly, it utilizes the well-established spherical harmonics expansion (SHE) technique to solve the BTE, and it combines analytical and numerical methods, in contrast with the Monte Carlo (MC) approach that employs ensemble averages of randomly generated events. The model leads to the solution of a time-dependent transient solution of the BTE with special initial and Ohmic boundary conditions that is solved in the frequency domain to directly compute the terminal current noise spectral density. It is also shown that with this approach the Nyquist theorem under thermal equilibrium conditions is recovered.

  10. Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda.

    PubMed

    Rota-Stabelli, Omar; Kayal, Ehsan; Gleeson, Dianne; Daub, Jennifer; Boore, Jeffrey L; Telford, Maximilian J; Pisani, Davide; Blaxter, Mark; Lavrov, Dennis V

    2010-01-01

    Ecdysozoa is the recently recognized clade of molting animals that comprises the vast majority of extant animal species and the most important invertebrate model organisms--the fruit fly and the nematode worm. Evolutionary relationships within the ecdysozoans remain, however, unresolved, impairing the correct interpretation of comparative genomic studies. In particular, the affinities of the three Panarthropoda phyla (Arthropoda, Onychophora, and Tardigrada) and the position of Myriapoda within Arthropoda (Mandibulata vs. Myriochelata hypothesis) are among the most contentious issues in animal phylogenetics. To elucidate these relationships, we have determined and analyzed complete or nearly complete mitochondrial genome sequences of two Tardigrada, Hypsibius dujardini and Thulinia sp. (the first genomes to date for this phylum); one Priapulida, Halicryptus spinulosus; and two Onychophora, Peripatoides sp. and Epiperipatus biolleyi; and a partial mitochondrial genome sequence of the Onychophora Euperipatoides kanagrensis. Tardigrada mitochondrial genomes resemble those of the arthropods in term of the gene order and strand asymmetry, whereas Onychophora genomes are characterized by numerous gene order rearrangements and strand asymmetry variations. In addition, Onychophora genomes are extremely enriched in A and T nucleotides, whereas Priapulida and Tardigrada are more balanced. Phylogenetic analyses based on concatenated amino acid coding sequences support a monophyletic origin of the Ecdysozoa and the position of Priapulida as the sister group of a monophyletic Panarthropoda (Tardigrada plus Onychophora plus Arthropoda). The position of Tardigrada is more problematic, most likely because of long branch attraction (LBA). However, experiments designed to reduce LBA suggest that the most likely placement of Tardigrada is as a sister group of Onychophora. The same analyses also recover monophyly of traditionally recognized arthropod lineages such as Arachnida and of

  11. Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda.

    PubMed

    Rota-Stabelli, Omar; Kayal, Ehsan; Gleeson, Dianne; Daub, Jennifer; Boore, Jeffrey L; Telford, Maximilian J; Pisani, Davide; Blaxter, Mark; Lavrov, Dennis V

    2010-07-12

    Ecdysozoa is the recently recognized clade of molting animals that comprises the vast majority of extant animal species and the most important invertebrate model organisms--the fruit fly and the nematode worm. Evolutionary relationships within the ecdysozoans remain, however, unresolved, impairing the correct interpretation of comparative genomic studies. In particular, the affinities of the three Panarthropoda phyla (Arthropoda, Onychophora, and Tardigrada) and the position of Myriapoda within Arthropoda (Mandibulata vs. Myriochelata hypothesis) are among the most contentious issues in animal phylogenetics. To elucidate these relationships, we have determined and analyzed complete or nearly complete mitochondrial genome sequences of two Tardigrada, Hypsibius dujardini and Thulinia sp. (the first genomes to date for this phylum); one Priapulida, Halicryptus spinulosus; and two Onychophora, Peripatoides sp. and Epiperipatus biolleyi; and a partial mitochondrial genome sequence of the Onychophora Euperipatoides kanagrensis. Tardigrada mitochondrial genomes resemble those of the arthropods in term of the gene order and strand asymmetry, whereas Onychophora genomes are characterized by numerous gene order rearrangements and strand asymmetry variations. In addition, Onychophora genomes are extremely enriched in A and T nucleotides, whereas Priapulida and Tardigrada are more balanced. Phylogenetic analyses based on concatenated amino acid coding sequences support a monophyletic origin of the Ecdysozoa and the position of Priapulida as the sister group of a monophyletic Panarthropoda (Tardigrada plus Onychophora plus Arthropoda). The position of Tardigrada is more problematic, most likely because of long branch attraction (LBA). However, experiments designed to reduce LBA suggest that the most likely placement of Tardigrada is as a sister group of Onychophora. The same analyses also recover monophyly of traditionally recognized arthropod lineages such as Arachnida and of

  12. A Model for the Common Origin of Jupiter Family and Halley Type Comets

    NASA Astrophysics Data System (ADS)

    Emel'yanenko, V. V.; Asher, D. J.; Bailey, M. E.

    2013-02-01

    A numerical simulation of the Oort cloud is used to explain the observed orbital distributions and numbers of Jupiter-family (JF) and Halley-type (HT) short-period (SP) comets. Comets are given initial orbits with perihelion distances between 5 and 36 au, and evolve under planetary, stellar and Galactic perturbations for 4.5 Gyr. This process leads to the formation of an Oort cloud (which we define as the region of semimajor axes a > 1,000 au), and to a flux of cometary bodies from the Oort cloud returning to the planetary region at the present epoch. The results are consistent with the dynamical characteristics of SP comets and other observed cometary populations: the near-parabolic flux, Centaurs, and high-eccentricity trans-Neptunian objects. To achieve this consistency with observations, the model requires that the number of comets versus initial perihelion distance is concentrated towards the outer planetary region. Moreover, the mean physical lifetime of observable comets in the inner planetary region ( q < 2.5 au) at the present epoch should be an increasing function of the comets' initial perihelion distances. Virtually all observed HT comets and nearly half of observed JF comets come from the Oort cloud, and initially (4.5 Gyr ago) from orbits concentrated near the outer planetary region. Comets that have been in the Oort cloud also return to the Centaur (5 < q < 28 au, a < 1,000 au) and near-Neptune high-eccentricity regions. Such objects with perihelia near Neptune are hard to discover, but Centaurs with characteristics predicted by the model (e.g. large semimajor axes, above 60 au, or high inclinations, above 40°) are increasingly being found by observers. The model provides a unified picture for the origin of JF and HT comets. It predicts that the mean physical lifetime of all comets in the region q < 1.5 au is less than ˜200 revolutions.

  13. Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda

    PubMed Central

    Rota-Stabelli, Omar; Kayal, Ehsan; Gleeson, Dianne; Daub, Jennifer; Boore, Jeffrey L.; Telford, Maximilian J.; Pisani, Davide; Blaxter, Mark; Lavrov, Dennis V.

    2010-01-01

    Ecdysozoa is the recently recognized clade of molting animals that comprises the vast majority of extant animal species and the most important invertebrate model organisms—the fruit fly and the nematode worm. Evolutionary relationships within the ecdysozoans remain, however, unresolved, impairing the correct interpretation of comparative genomic studies. In particular, the affinities of the three Panarthropoda phyla (Arthropoda, Onychophora, and Tardigrada) and the position of Myriapoda within Arthropoda (Mandibulata vs. Myriochelata hypothesis) are among the most contentious issues in animal phylogenetics. To elucidate these relationships, we have determined and analyzed complete or nearly complete mitochondrial genome sequences of two Tardigrada, Hypsibius dujardini and Thulinia sp. (the first genomes to date for this phylum); one Priapulida, Halicryptus spinulosus; and two Onychophora, Peripatoides sp. and Epiperipatus biolleyi; and a partial mitochondrial genome sequence of the Onychophora Euperipatoides kanagrensis. Tardigrada mitochondrial genomes resemble those of the arthropods in term of the gene order and strand asymmetry, whereas Onychophora genomes are characterized by numerous gene order rearrangements and strand asymmetry variations. In addition, Onychophora genomes are extremely enriched in A and T nucleotides, whereas Priapulida and Tardigrada are more balanced. Phylogenetic analyses based on concatenated amino acid coding sequences support a monophyletic origin of the Ecdysozoa and the position of Priapulida as the sister group of a monophyletic Panarthropoda (Tardigrada plus Onychophora plus Arthropoda). The position of Tardigrada is more problematic, most likely because of long branch attraction (LBA). However, experiments designed to reduce LBA suggest that the most likely placement of Tardigrada is as a sister group of Onychophora. The same analyses also recover monophyly of traditionally recognized arthropod lineages such as Arachnida and of

  14. A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures

    PubMed Central

    Olalde, Iñigo; Schroeder, Hannes; Sandoval-Velasco, Marcela; Vinner, Lasse; Lobón, Irene; Ramirez, Oscar; Civit, Sergi; García Borja, Pablo; Salazar-García, Domingo C.; Talamo, Sahra; María Fullola, Josep; Xavier Oms, Francesc; Pedro, Mireia; Martínez, Pablo; Sanz, Montserrat; Daura, Joan; Zilhão, João; Marquès-Bonet, Tomàs; Gilbert, M. Thomas P.; Lalueza-Fox, Carles

    2015-01-01

    The spread of farming out of the Balkans and into the rest of Europe followed two distinct routes: An initial expansion represented by the Impressa and Cardial traditions, which followed the Northern Mediterranean coastline; and another expansion represented by the LBK (Linearbandkeramik) tradition, which followed the Danube River into Central Europe. Although genomic data now exist from samples representing the second migration, such data have yet to be successfully generated from the initial Mediterranean migration. To address this, we generated the complete genome of a 7,400-year-old Cardial individual (CB13) from Cova Bonica in Vallirana (Barcelona), as well as partial nuclear data from five others excavated from different sites in Spain and Portugal. CB13 clusters with all previously sequenced early European farmers and modern-day Sardinians. Furthermore, our analyses suggest that both Cardial and LBK peoples derived from a common ancient population located in or around the Balkan Peninsula. The Iberian Cardial genome also carries a discernible hunter–gatherer genetic signature that likely was not acquired by admixture with local Iberian foragers. Our results indicate that retrieving ancient genomes from similarly warm Mediterranean environments such as the Near East is technically feasible. PMID:26337550

  15. Social origins, biological treatments: The public health implications of common mental disorders in India

    PubMed Central

    Patel, Vikram

    2005-01-01

    Common mental disorders (CMD) is a term used to describe depressive and anxiety disorders. It replaces the old term ‘neuroses’ and is widely used because of the high level of co-morbidity of depression and anxiety, which limits the validity of categorical models of classification of neurotic disorders, particularly in primary care settings. The global public health significance of CMD is highlighted by the fact that in developing countries, depression is the leading cause of years lived with disability in both men and women aged 15–44 years. This oration brings together research evidence, mostly from South Asia, to show that although the aetiology of CMD may lie in the socioeconomic circumstances faced by many patients, biological treatments such as antidepressants may be among the most cost-effective treatments in resource-poor settings. The oration demonstrates the public health implications of CMD by briefly reviewing the burden of CMD in the region and presents evidence linking the risk for CMD associated with two of the region's most important public health risk factors—poverty and gender disadvantage. The oration also presents recent evidence to establish the association of CMD with some of the region's most important public health issues: maternal and child health; and reproductive and sexual health. Next, the evidence for the efficacy of treatments for CMD in developing countries is presented, focusing on a series of recent trials that show that both psychosocial and biological treatments are effective. Finally, the implications for policy and future research are considered.

  16. Biosynthesis of locust lipophorin. Apolipophorins I and II originate from a common precursor.

    PubMed

    Weers, P M; Van Marrewijk, W J; Beenakkers, A M; Van der Horst, D J

    1993-02-25

    Biosynthesis of apolipophorins of high density lipophorin of the locust Locusta migratoria was studied in vitro. Analysis of immunoprecipitates from homogenates of in vitro labeled fat body revealed a common precursor for apolipophorin I (apoLp-I, M(r) 220,000) and apolipophorin II (apoLp-II, M(r) 72,000) with a molecular mass of approximately 280 kDa. Pulsechase experiments showed that this high molecular mass precursor is cleaved into apoLp-I and apoLp-II which subsequently are secreted as high density lipophorin from the fat body. The time required for the complete synthesis and secretion was estimated to be approximately 35 min. Both apolipophorins are glycoproteins as demonstrated by the incorporation of [3H]mannose. Treatment of [3H]mannose-labeled apolipophorin with endoglycosidase H resulted in the complete removal of the incorporated [3H]mannose. Endoglycosidase H treatment of [3H]leucine-labeled apolipophorins caused a reduction in molecular mass of approximately 3 kDa for apoLp-I and 3.5 kDa for apoLp-II, suggesting the N-linked carbohydrate content to be 1-2 and 5%, respectively. Incubation of fat body tissue in the presence of low concentrations of tunicamycin led to the synthesis and release of nonglycosylated apolipophorins. PMID:8440714

  17. Evidence for a Common Physical Origin of the Landau and BEC Theories of Superfluidity

    DOE PAGES

    Diallo, Souleymane Omar; Azuah, R. T.; Abernathy, D. L.; Taniguchi, Junko; Suzuki, Masaru; Bossy, Jacques; Mulders, N.; Glyde, H. R.

    2014-11-20

    There are two renowned theories of superfluidity in liquid 4He, quite different and each with specific domains of application. In the first, the Landau theory, superflow follows from the existence of a well-defined collective mode supported by dense liquid 4He, the phonon-roton mode. In the second, superflow is a manifestation of Bose-Einstein condensation (BEC) and phase coherence in the liquid. We present combined measurements of superfluidity, BEC and phonon-roton (P-R) modes in liquid 4He confined in the porous medium MCM-41. The results integrate the two theories by showing that well-defined P-R modes exist where there is BEC. The two aremore » common properties of a Bose condensed liquid and either can be used as a basis of a theory of superfluidity. In addition, the confinement and disorder suppresses the critical temperature for superfluidity, Tc, below that for BEC creating a localized BEC phase consisting of islands of BEC and P-R modes. This phase is much like the pseudogap phase in the cuprate superconductors.« less

  18. Evidence for a Common Physical Origin of the Landau and BEC Theories of Superfluidity

    SciTech Connect

    Diallo, Souleymane Omar; Azuah, R. T.; Abernathy, D. L.; Taniguchi, Junko; Suzuki, Masaru; Bossy, Jacques; Mulders, N.; Glyde, H. R.

    2014-11-20

    There are two renowned theories of superfluidity in liquid 4He, quite different and each with specific domains of application. In the first, the Landau theory, superflow follows from the existence of a well-defined collective mode supported by dense liquid 4He, the phonon-roton mode. In the second, superflow is a manifestation of Bose-Einstein condensation (BEC) and phase coherence in the liquid. We present combined measurements of superfluidity, BEC and phonon-roton (P-R) modes in liquid 4He confined in the porous medium MCM-41. The results integrate the two theories by showing that well-defined P-R modes exist where there is BEC. The two are common properties of a Bose condensed liquid and either can be used as a basis of a theory of superfluidity. In addition, the confinement and disorder suppresses the critical temperature for superfluidity, Tc, below that for BEC creating a localized BEC phase consisting of islands of BEC and P-R modes. This phase is much like the pseudogap phase in the cuprate superconductors.

  19. A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures.

    PubMed

    Olalde, Iñigo; Schroeder, Hannes; Sandoval-Velasco, Marcela; Vinner, Lasse; Lobón, Irene; Ramirez, Oscar; Civit, Sergi; García Borja, Pablo; Salazar-García, Domingo C; Talamo, Sahra; María Fullola, Josep; Xavier Oms, Francesc; Pedro, Mireia; Martínez, Pablo; Sanz, Montserrat; Daura, Joan; Zilhão, João; Marquès-Bonet, Tomàs; Gilbert, M Thomas P; Lalueza-Fox, Carles

    2015-12-01

    The spread of farming out of the Balkans and into the rest of Europe followed two distinct routes: An initial expansion represented by the Impressa and Cardial traditions, which followed the Northern Mediterranean coastline; and another expansion represented by the LBK (Linearbandkeramik) tradition, which followed the Danube River into Central Europe. Although genomic data now exist from samples representing the second migration, such data have yet to be successfully generated from the initial Mediterranean migration. To address this, we generated the complete genome of a 7,400-year-old Cardial individual (CB13) from Cova Bonica in Vallirana (Barcelona), as well as partial nuclear data from five others excavated from different sites in Spain and Portugal. CB13 clusters with all previously sequenced early European farmers and modern-day Sardinians. Furthermore, our analyses suggest that both Cardial and LBK peoples derived from a common ancient population located in or around the Balkan Peninsula. The Iberian Cardial genome also carries a discernible hunter-gatherer genetic signature that likely was not acquired by admixture with local Iberian foragers. Our results indicate that retrieving ancient genomes from similarly warm Mediterranean environments such as the Near East is technically feasible.

  20. Evidence for a Common Physical Origin of the Landau and BEC Theories of Superfluidity

    NASA Astrophysics Data System (ADS)

    Diallo, S. O.; Azuah, R. T.; Abernathy, D. L.; Taniguchi, Junko; Suzuki, Masaru; Bossy, Jacques; Mulders, N.; Glyde, H. R.

    2014-11-01

    There are two renowned theories of superfluidity in liquid He 4 , quite different and each with specific domains of application. In the first, the Landau theory, superflow follows from the existence of a well-defined collective mode supported by dense liquid He 4 , the phonon-roton mode. In the second, superflow is a manifestation of Bose-Einstein condensation (BEC) and phase coherence in the liquid. We present combined measurements of superfluidity, BEC and phonon-roton (P-R) modes in liquid He 4 confined in the porous medium MCM-41. The results integrate the two theories by showing that well-defined P-R modes exist where there is BEC. The two are common properties of a Bose condensed liquid and either can be used as a basis of a theory of superfluidity. In addition, the confinement and disorder suppresses the critical temperature for superfluidity, Tc, below that for BEC creating a localized BEC "phase" consisting of islands of BEC and P-R modes. This phase is much like the pseudogap phase in the cuprate superconductors.

  1. Evidence for a Common Origin of Homomorphic and Heteromorphic Sex Chromosomes in Distinct Spinacia Species

    PubMed Central

    Fujito, Satoshi; Takahata, Satoshi; Suzuki, Reimi; Hoshino, Yoichiro; Ohmido, Nobuko; Onodera, Yasuyuki

    2015-01-01

    The dioecious genus Spinacia is thought to include two wild relatives (S. turkestanica Ilj. and S. tetrandra Stev.) of cultivated spinach (S. oleracea L.). In this study, nuclear and chloroplast sequences from 21 accessions of Spinacia germplasm and six spinach cultivars or lines were subjected to phylogenetic analysis to define the relationships among the three species. Maximum-likelihood sequence analysis suggested that the Spinacia plant samples could be classified into two monophyletic groups (Group 1 and Group 2): Group 1 consisted of all accessions, cultivars, and lines of S. oleracea L. and S. turkestanica Ilj. and two of five S. tetrandra Stev. accessions, whereas Group 2 was composed of the three remaining S. tetrandra Stev. accessions. By using flow cytometry, we detected a distinct difference in nuclear genome size between the groups. Group 2 also was characterized by a sexual dimorphism in inflorescence structure, which was not observed in Group 1. Interspecific crosses between the groups produced hybrids with drastically reduced pollen fertility and showed that the male is the heterogametic sex (XY) in Group 2, as is the case in S. oleracea L. (Group 1). Cytogenetic and DNA marker analyses suggested that Group 1 and Group 2 have homomorphic and heteromorphic sex chromosome pairs (XY), respectively, and that the sex chromosome pairs of the two groups evolved from a common ancestral pair. Our data suggest that the Spinacia genus may serve as a good model for investigation of evolutionary mechanisms underlying the emergence of heteromorphic sex chromosome pairs from ancestral homomorphic pairs. PMID:26048564

  2. Measurement Sets and Sites Commonly Used for High Spatial Resolution Image Product Characterization

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary

    2006-01-01

    Scientists within NASA's Applied Sciences Directorate have developed a well-characterized remote sensing Verification & Validation (V&V) site at the John C. Stennis Space Center (SSC). This site has enabled the in-flight characterization of satellite high spatial resolution remote sensing system products form Space Imaging IKONOS, Digital Globe QuickBird, and ORBIMAGE OrbView, as well as advanced multispectral airborne digital camera products. SSC utilizes engineered geodetic targets, edge targets, radiometric tarps, atmospheric monitoring equipment and their Instrument Validation Laboratory to characterize high spatial resolution remote sensing data products. This presentation describes the SSC characterization capabilities and techniques in the visible through near infrared spectrum and examples of calibration results.

  3. An Evolutionary Network of Genes Present in the Eukaryote Common Ancestor Polls Genomes on Eukaryotic and Mitochondrial Origin

    PubMed Central

    Thiergart, Thorsten; Landan, Giddy; Schenk, Marc; Dagan, Tal; Martin, William F.

    2012-01-01

    To test the predictions of competing and mutually exclusive hypotheses for the origin of eukaryotes, we identified from a sample of 27 sequenced eukaryotic and 994 sequenced prokaryotic genomes 571 genes that were present in the eukaryote common ancestor and that have homologues among eubacterial and archaebacterial genomes. Maximum-likelihood trees identified the prokaryotic genomes that most frequently contained genes branching as the sister to the eukaryotic nuclear homologues. Among the archaebacteria, euryarchaeote genomes most frequently harbored the sister to the eukaryotic nuclear gene, whereas among eubacteria, the α-proteobacteria were most frequently represented within the sister group. Only 3 genes out of 571 gave a 3-domain tree. Homologues from α-proteobacterial genomes that branched as the sister to nuclear genes were found more frequently in genomes of facultatively anaerobic members of the rhiozobiales and rhodospirilliales than in obligate intracellular ricketttsial parasites. Following α-proteobacteria, the most frequent eubacterial sister lineages were γ-proteobacteria, δ-proteobacteria, and firmicutes, which were also the prokaryote genomes least frequently found as monophyletic groups in our trees. Although all 22 higher prokaryotic taxa sampled (crenarchaeotes, γ-proteobacteria, spirochaetes, chlamydias, etc.) harbor genes that branch as the sister to homologues present in the eukaryotic common ancestor, that is not evidence of 22 different prokaryotic cells participating at eukaryote origins because prokaryotic “lineages” have laterally acquired genes for more than 1.5 billion years since eukaryote origins. The data underscore the archaebacterial (host) nature of the eukaryotic informational genes and the eubacterial (mitochondrial) nature of eukaryotic energy metabolism. The network linking genes of the eukaryote ancestor to contemporary homologues distributed across prokaryotic genomes elucidates eukaryote gene origins in a

  4. Mitochondrial genes support a common origin of rodent malaria parasites and Plasmodium falciparum's relatives infecting great apes

    PubMed Central

    2011-01-01

    Background Plasmodium falciparum is responsible for the most acute form of human malaria. Most recent studies demonstrate that it belongs to a monophyletic lineage specialized in the infection of great ape hosts. Several other Plasmodium species cause human malaria. They all belong to another distinct lineage of parasites which infect a wider range of primate species. All known mammalian malaria parasites appear to be monophyletic. Their clade includes the two previous distinct lineages of parasites of primates and great apes, one lineage of rodent parasites, and presumably Hepatocystis species. Plasmodium falciparum and great ape parasites are commonly thought to be the sister-group of all other mammal-infecting malaria parasites. However, some studies supported contradictory origins and found parasites of great apes to be closer to those of rodents, or to those of other primates. Results To distinguish between these mutually exclusive hypotheses on the origin of Plasmodium falciparum and its great ape infecting relatives, we performed a comprehensive phylogenetic analysis based on a data set of three mitochondrial genes from 33 to 84 malaria parasites. We showed that malarial mitochondrial genes have evolved slowly and are compositionally homogeneous. We estimated their phylogenetic relationships using Bayesian and maximum-likelihood methods. Inferred trees were checked for their robustness to the (i) site selection, (ii) assumptions of various probabilistic models, and (iii) taxon sampling. Our results robustly support a common ancestry of rodent parasites and Plasmodium falciparum's relatives infecting great apes. Conclusions Our results refute the most common view of the origin of great ape malaria parasites, and instead demonstrate the robustness of a less well-established phylogenetic hypothesis, under which Plasmodium falciparum and its relatives infecting great apes are closely related to rodent parasites. This study sheds light on the evolutionary history

  5. Fundamental limits to the accuracy of deuterium isotopes for identifying the spatial origin of migratory animals

    USGS Publications Warehouse

    Farmer, A.; Cade, B.S.; Torres-Dowdall, J.

    2008-01-01

    Deuterium isotope analyses have revolutionized the study of migratory connectivity because global gradients of deuterium in precipitation (??DP) are expressed on a continental scale. Several authors have constructed continental scale base maps of ??DP to provide a spatial reference for studying the movement patterns of migratory species and, although they are very useful, these maps present a static, 40-year average view of the landscape that ignores much underlying inter-annual variation. To more fully understand the consequences of this underlying variation, we analyzed the GNIP deuterium data, the source for all current ??DP maps, to estimate the minimum separation in ??DP (and latitude) necessary to conclude with a given level of confidence that distinct ??DP values represent different geographic sites. Extending analyses of ??DP successfully to deuterium in tissues of living organisms, e.g., feathers in migratory birds (??DF), is dependent on the existence of geographic separation of ??DP, where every geographic location has a distribution of values associated with temporal variability in ??DP. Analyses were conducted for three distinct geographic regions: North America, eastern North America (east of longitude 100??W), and Argentina. At the 80% confidence level, the minimum separation values were 12, 7, and 14?? of latitude (equivalent to 53, 31, and 32???) for North America, eastern North America, and Argentina, respectively. Hence, in eastern North America, for example, one may not be able to accurately assign individual samples to sites separated by less than about 7?? of latitude as the distributions of ??DP were not distinct at latitudes <7?? apart. Moreover, two samples that differ by less than 31??? cannot be confidently said to originate from different latitudes. These estimates of minimum separation for ??DP do not include other known sources of variation in feather deuterium (??D F) and hence are a first order approximation that may be useful, in

  6. Developmental changes in the spatial organization of neurons in the neocortex of humans and common chimpanzees.

    PubMed

    Teffer, Kate; Buxhoeveden, Daniel P; Stimpson, Cheryl D; Fobbs, Archibald J; Schapiro, Steven J; Baze, Wallace B; McArthur, Mark J; Hopkins, William D; Hof, Patrick R; Sherwood, Chet C; Semendeferi, Katerina

    2013-12-15

    In adult humans the prefrontal cortex possesses wider minicolumns and more neuropil space than other cortical regions. These aspects of prefrontal cortex architecture, furthermore, are increased in comparison to chimpanzees and other great apes. In order to determine the developmental appearance of this human cortical specialization, we examined the spatial organization of neurons in four cortical regions (frontal pole [Brodmann's area 10], primary motor [area 4], primary somatosensory [area 3b], and prestriate visual cortex [area 18]) in chimpanzees and humans from birth to approximately the time of adolescence (11 years of age). Horizontal spacing distance (HSD) and gray level ratio (GLR) of layer III neurons were measured in Nissl-stained sections. In both human and chimpanzee area 10, HSD was significantly higher in the postweaning specimens compared to the preweaning ones. No significant age-related differences were seen in the other regions in either species. In concert with other recent studies, the current findings suggest that there is a relatively slower maturation of area 10 in both humans and chimpanzees as compared to other cortical regions, and that further refinement of the spatial organization of neurons within this prefrontal area in humans takes place after the postweaning periods included here.

  7. Spatial regulation of a common precursor from two distinct genes generates metabolite diversity

    DOE PAGES

    Guo, Chun -Jun; Sun, Wei -Wen; Bruno, Kenneth S.; Oakley, Berl R.; Keller, Nancy P.; Wang, Clay C. C.

    2015-07-13

    In secondary metabolite biosynthesis, core synthetic genes such as polyketide synthase genes usually encode proteins that generate various backbone precursors. These precursors are modified by other tailoring enzymes to yield a large variety of different secondary metabolites. The number of core synthesis genes in a given species correlates, therefore, with the number of types of secondary metabolites the organism can produce. In our study, heterologous expression of all the A. terreus NRPSlike genes showed that two NRPS-like proteins, encoded by atmelA and apvA, release the same natural product, aspulvinone E. In hyphae this compound is converted to aspulvinones whereas inmore » conidia it is converted to melanin. The genes are expressed in different tissues and this spatial control is probably regulated by their own specific promoters. Comparative genomics indicates that atmelA and apvA might share a same ancestral gene and the gene apvA is located in a highly conserved region in Aspergillus species that contains genes coding for life-essential proteins. Our data reveal the first case in secondary metabolite biosynthesis in which the tissue specific production of a single compound directs it into two separate pathways, producing distinct compounds with different functions. Our data also reveal that a single trans-prenyltransferase, AbpB, prenylates two substrates, aspulvinones and butyrolactones, revealing that genes outside of contiguous secondary metabolism gene clusters can modify more than one compound thereby expanding metabolite diversity. Our study raises the possibility of incorporation of spatial, cell-type specificity in expression of secondary metabolites of biological interest and provides new insight into designing and reconstituting their biosynthetic pathways.« less

  8. Spatial regulation of a common precursor from two distinct genes generates metabolite diversity

    SciTech Connect

    Guo, Chun -Jun; Sun, Wei -Wen; Bruno, Kenneth S.; Oakley, Berl R.; Keller, Nancy P.; Wang, Clay C. C.

    2015-07-13

    In secondary metabolite biosynthesis, core synthetic genes such as polyketide synthase genes usually encode proteins that generate various backbone precursors. These precursors are modified by other tailoring enzymes to yield a large variety of different secondary metabolites. The number of core synthesis genes in a given species correlates, therefore, with the number of types of secondary metabolites the organism can produce. In our study, heterologous expression of all the A. terreus NRPSlike genes showed that two NRPS-like proteins, encoded by atmelA and apvA, release the same natural product, aspulvinone E. In hyphae this compound is converted to aspulvinones whereas in conidia it is converted to melanin. The genes are expressed in different tissues and this spatial control is probably regulated by their own specific promoters. Comparative genomics indicates that atmelA and apvA might share a same ancestral gene and the gene apvA is located in a highly conserved region in Aspergillus species that contains genes coding for life-essential proteins. Our data reveal the first case in secondary metabolite biosynthesis in which the tissue specific production of a single compound directs it into two separate pathways, producing distinct compounds with different functions. Our data also reveal that a single trans-prenyltransferase, AbpB, prenylates two substrates, aspulvinones and butyrolactones, revealing that genes outside of contiguous secondary metabolism gene clusters can modify more than one compound thereby expanding metabolite diversity. Our study raises the possibility of incorporation of spatial, cell-type specificity in expression of secondary metabolites of biological interest and provides new insight into designing and reconstituting their biosynthetic pathways.

  9. Metrics in the space of orbits and their application to searching for celestial objects of common origin

    NASA Astrophysics Data System (ADS)

    Kholshevnikov, K. V.; Kokhirova, G. I.; Babadzhanov, P. B.; Khamroev, U. H.

    2016-10-01

    Finding a common origin for various celestial bodies, especially the relations between meteoroid streams, comets and asteroids (possibly extinct comets), remains one of the important problems in Solar system astronomy. Different criteria, starting with one by Southworth and Hawkins, have been used for this purpose. Ideally, they must represent some kind of metric in a five-dimensional space of orbits. Unfortunately, they are not ideal. The majority of the criteria have been examined by us. It turns out that they all represent pseudometrics for which the triangle axiom is not fulfilled. Besides this, they are inapplicable if at least one of the orbits is circular. We propose metrics free of all the aforementioned drawbacks. In addition, the metric properties of three factor-spaces, where orbits are identified irrespective of the values of node longitudes, pericentre arguments or both, are examined. The results are applied to the problem of searching for minor bodies of the Solar system with a common origin. The relationship between comet 96P/Machholz 1 and asteroid 2003EH1, as well as that between comet 2P/Encke and asteroid 2004TG10, has been proved. Using all criteria considered and the new metrics leads to practically identical results. This is explained by the fact that only close and essentially non-circular orbits were analysed. Besides this, the measure of orbit triples for which the triangle axiom failed is likely small, though this problem has not been examined yet.

  10. Single-trial detection of visual evoked potentials by common spatial patterns and wavelet filtering for brain-computer interface.

    PubMed

    Tu, Yiheng; Huang, Gan; Hung, Yeung Sam; Hu, Li; Hu, Yong; Zhang, Zhiguo

    2013-01-01

    Event-related potentials (ERPs) are widely used in brain-computer interface (BCI) systems as input signals conveying a subject's intention. A fast and reliable single-trial ERP detection method can be used to develop a BCI system with both high speed and high accuracy. However, most of single-trial ERP detection methods are developed for offline EEG analysis and thus have a high computational complexity and need manual operations. Therefore, they are not applicable to practical BCI systems, which require a low-complexity and automatic ERP detection method. This work presents a joint spatial-time-frequency filter that combines common spatial patterns (CSP) and wavelet filtering (WF) for improving the signal-to-noise (SNR) of visual evoked potentials (VEP), which can lead to a single-trial ERP-based BCI.

  11. Origins.

    ERIC Educational Resources Information Center

    Online-Offline, 1999

    1999-01-01

    Provides an annotated list of resources dealing with the theme of origins of life, the universe, and traditions. Includes Web sites, videos, books, audio materials, and magazines with appropriate grade levels and/or subject disciplines indicated; professional resources; and learning activities. (LRW)

  12. Spatial regulation of a common precursor from two distinct genes generates metabolite diversity

    SciTech Connect

    Guo, Chun-Jun; Sun, Wei-Wen; Bruno, Kenneth S.; Oakley, Berl R.; Keller, Nancy P.; Wang, Clay C.

    2015-07-13

    In secondary metabolite biosynthesis, core synthetic genes such as polyketide synthase genes or non-ribosomal peptide synthase genes usually encode proteins that generate various backbone precursors. These precursors are modified by other tailoring enzymes to yield a large variety of different secondary metabolites. The number of core synthesis genes in a given species correlates, therefore, with the number of types of secondary metabolites the organism can produce. In our study, heterologous expression of all the A. terreus NRPS-like genes showed that two NRPS-like proteins, encoded by atmelA and apvA, release the same natural product, aspulvinone E. More interestingly, further experiments revealed that the aspulvinone E produced by two different genes accumulates in different fungal compartments. And this spatial control of aspulvinone E production is likely to be regulated by their own specific promoters. Comparative genomics indicates that atmelA and apvA might share a same ancestral gene and the gene apvA is inserted in a highly conserved region in Aspergillus species that contains genes coding for life-essential proteins. The study also identified one trans-prenyltransferase AbpB which is capable of prenylating two different substrates aspulvinones and butyrolactones. In total, our study shows the first example in which the locally distribution of the same natural product could lead to its incorporation into different SM pathways.

  13. Compositions of three low-FeO ordinary chondrites: Indications of a common origin with the H chondrites

    SciTech Connect

    Troiano, Julianne; Rumble III, Douglas; Rivers, Mark L.; Friedrich, Jon M.

    2011-11-17

    Burnwell, EET 96031, and LAP 04575 are ordinary chondrites (OC) that possess lower than typical olivine Fa content than has been established for the H chondrites (< 17 mol%). Mean low-Ca pyroxene Fs contents are typically lower than mean Fa content, with generally 16 mol% Fs. We have investigated these three low-FeO chondrites by measuring their trace element abundances, oxygen isotopic compositions, and examining their three-dimensional (3D) petrography with synchrotron X-ray microtomography. We compare our results with those established for more common OC. The low FeO chondrites studied here have bulk trace element abundances that are identical to the H chondrites. From bulk oxygen isotopic analysis, we show that Burnwell, EET 96010, and LAP 04757 sampled oxygen reservoirs identical to the H chondrites. Burnwell, EET 96031, and LAP 04575 possess common 3D opaque mineral structures that could be distinct from the H chondrites, as evidenced by X-ray microtomographic analysis, but our comparison suite of H chondrites is small and unrepresentative. Overall, our data suggest a common origin for the low-FeO chondrites Burnwell, EET 96010, and LAP 04757 and the H chondrites. These three samples are simply extreme members of a redox process where a limiting nebular oxidizing agent, probably ice, reacted with material containing slightly higher amounts of metal than typically seen in the H chondrites.

  14. [Significance of the smell of a conspecific for the spatial distribution of the common shrew Sorex araneus L].

    PubMed

    Tumas'ian, F A; Shchipanova, N A

    2013-01-01

    The significance of smell marks of conspecifics for the spatial distribution of common shrews was studied. The existence of two groups of individuals, which differ in their reaction to the smell of a conspecific, was shown. Individuals with different reactions were shown to have reliable differences in the sizes of the areas visited by them, the mutual location of their plots, and the percent of activity combined with the activity of the neighbor. The significance of such differences in reactions for the formation of the social system of shrews is discussed.

  15. Origins.

    PubMed

    Weinberg, S

    1985-10-01

    The farthest of the galaxies that can be seen through the large ground-based telescopes of modern astronomy, such as those on La Palma in the Canary Islands, are so far away that they appear as they did close to the time of the origin of the universe, perhaps some 10 billion years ago. Much has been learned, and much has still to be learned, about the young universe from optical and radio telescopes, but these instruments cannot be used to look directly at the universe in its first few hundred thousand years. Instead, they are used to search the relatively recent past for relics of much earlier times. Together with experiments planned for the next generation of elementary particle accelerators, astronomical observations should continue to extend what is known about the universe backward in time to the Big Bang and may eventually help to reveal the origins of the physical laws that govern the universe.

  16. Spatial memory alterations in children with epilepsy of genetic origin or unknown cause.

    PubMed

    Cimadevilla, José Manuel; Lizana, Julio Ramos; Roldán, Maria Dolores; Cánovas, Rosa; Rodríguez, Eva

    2014-06-01

    Genetic generalised epilepsy or epilepsy of unknown cause can remit before adolescence. In many children, the disease does not interfere with their academic achievement. Although there are neuropsychological studies characterising the cognitive profile, there are no studies in this population focused on spatial orientation abilities. In this study, we compared children with genetic generalised epilepsy or epilepsy of unknown cause with a control group using a virtual spatial learning task. Children with epilepsy showed worse performance on the spatial orientation task, although their visuo-spatial memory, attention, and working memory were normal. These results confirm that genetic generalised epilepsy or epilepsy of unknown cause is associated with more cognitive deficits. Virtual reality technologies can complement clinical assessment.

  17. Common origin of kinetic scale turbulence and the electron halo in the solar wind - Connection to nanoflares

    NASA Astrophysics Data System (ADS)

    Che, Haihong

    2016-03-01

    We summarize our recent studies on the origin of solar wind kinetic scale turbulence and electron halo in the electron velocity distribution function. Increasing observations of nanoflares and microscopic type III radio bursts strongly suggest that nanoflares and accelerated electron beams are common in the corona. Based on particle-in-cell simulations, we show that both the core-halo feature and kinetic scale turbulence observed in the solar wind can be produced by the nonlinear evolution of electron two-stream instability driven by nanoflare accelerated electron beams. The energy exchange between waves and particles reaches equilibrium in the inner corona and the key features of the turbulence and velocity distribution are preserved as the solar wind escapes into interplanetary space along open magnetic field lines. Observational tests of the model and future theoretical work are discussed.

  18. Transferable Antibiotic Resistance Elements in Haemophilus influenzae Share a Common Evolutionary Origin with a Diverse Family of Syntenic Genomic Islands

    PubMed Central

    Mohd-Zain, Zaini; Turner, Sarah L.; Cerdeño-Tárraga, Ana M.; Lilley, Andrew K.; Inzana, Thomas J.; Duncan, A. Jane; Harding, Rosalind M.; Hood, Derek W.; Peto, Timothy E.; Crook, Derrick W.

    2004-01-01

    Transferable antibiotic resistance in Haemophilus influenzae was first detected in the early 1970s. After this, resistance spread rapidly worldwide and was shown to be transferred by a large 40- to 60-kb conjugative element. Bioinformatics analysis of the complete sequence of a typical H. influenzae conjugative resistance element, ICEHin1056, revealed the shared evolutionary origin of this element. ICEHin1056 has homology to 20 contiguous sequences in the National Center for Biotechnology Information database. Systematic comparison of these homologous sequences resulted in identification of a conserved syntenic genomic island consisting of up to 33 core genes in 16 β- and γ-Proteobacteria. These diverse genomic islands shared a common evolutionary origin, insert into tRNA genes, and have diverged widely, with G+C contents ranging from 40 to 70% and amino acid homologies as low as 20 to 25% for shared core genes. These core genes are likely to account for the conjugative transfer of the genomic islands and may even encode autonomous replication. Accessory gene clusters were nestled among the core genes and encode the following diverse major attributes: antibiotic, metal, and antiseptic resistance; degradation of chemicals; type IV secretion systems; two-component signaling systems; Vi antigen capsule synthesis; toxin production; and a wide range of metabolic functions. These related genomic islands include the following well-characterized structures: SPI-7, found in Salmonella enterica serovar Typhi; PAP1 or pKLC102, found in Pseudomonas aeruginosa; and the clc element, found in Pseudomonas sp. strain B13. This is the first report of a diverse family of related syntenic genomic islands with a deep evolutionary origin, and our findings challenge the view that genomic islands consist only of independently evolving modules. PMID:15547285

  19. Space—The Primal Frontier? Spatial Cognition and the Origins of Concepts

    PubMed Central

    Keil, Frank C.

    2009-01-01

    The more carefully we look, the more impressive the repertoire of infant concepts seems to be. Across a wide range of tasks, infants seem to be using concepts corresponding to surprisingly high-level and abstract categories and relations. It is tempting to try to explain these abilities in terms of a core capacity in spatial cognition that emerges very early in development and then gets extended beyond reasoning about direct spatial arrays and events. Although such a spatial cognitive capacity may indeed form one valuable basis for later cognitive growth, it seems unlikely that it can be the sole or even primary explanation for either the impressive conceptual capacities of infants or the ways in which concepts develop. PMID:19946621

  20. Correction: Charge-tunnelling and self-trapping: common origins for blinking, grey-state emission and photoluminescence enhancement in semiconductor quantum dots

    NASA Astrophysics Data System (ADS)

    Osborne, M. A.; Fisher, A. A. E.

    2016-07-01

    Correction for `Charge-tunnelling and self-trapping: common origins for blinking, grey-state emission and photoluminescence enhancement in semiconductor quantum dots' by M. A. Osborne, et al., Nanoscale, 2016, 8, 9272-9283.

  1. Measuring spatial variation in secondary production and food quality using a common consumer approach in Lake Erie.

    PubMed

    Larson, James H; Richardson, William B; Evans, Mary Anne; Schaeffer, Jeff; Wynne, Timothy; Bartsch, Michelle; Bartsch, Lynn; Nelson, John C; Vallazza, Jon

    2016-04-01

    Lake Erie is a large lake straddling the border of the USA and Canada that has become increasingly eutrophic in recent years. Eutrophication is particularly focused in the shallow western basin. The western basin of Lake Erie is hydrodynamically similar to a large estuary, with riverine inputs from the Detroit and Maumee Rivers mixing together and creating gradients in chemical and physical conditions. This study was driven by two questions: (1) How does secondary production and food quality for consumers vary across this large mixing zone? and (2) Are there correlations between cyanobacterial abundance and secondary production or food quality for consumers? Measuring spatial and temporal variation in secondary production and food quality is difficult for a variety of logistical reasons, so here a common consumer approach was used. In a common consumer approach, individuals of a single species are raised under similar conditions until placed in the field across environmental gradients of interest. After some period of exposure, the response of that common consumer is measured to provide an index of spatial variation in conditions. Here, a freshwater mussel (Lampsilis siliquoidea) was deployed at 32 locations that spanned habitat types and a gradient in cyanobacterial abundance in the western basin of Lake Erie to measure spatial variation in growth (an index of secondary production) and fatty acid (FA) content (an index of food quality). We found secondary production was highest within the Maumee river mouth and lowest in the open waters of the lake. Mussel tissues in the Maumee river mouth also included more eicosapentaenoic and docosapentaenoic fatty acids (EPA and DPA, respectively), but fewer bacterial FAs, suggesting more algae at the base of the food web in the Maumee river mouth compared to open lake sites. The satellite-derived estimate of cyanobacterial abundance was not correlated to secondary production, but was positively related to EPA and DPA content

  2. Measuring spatial variation in secondary production and food quality using a common consumer approach in Lake Erie

    USGS Publications Warehouse

    Larson, James H.; Richardson, William B.; Evans, Mary Anne; Schaeffer, Jeff; Wynne, Timothy; Bartsch, Michelle; Bartsch, Lynn; Nelson, J. C.; Vallazza, Jon M.

    2016-01-01

    Lake Erie is a large lake straddling the border of the U.S. and Canada that has become increasingly eutrophic in recent years. Eutrophication is particularly focused in the shallow western basin. The western basin of Lake Erie is hydrodynamically similar to a large estuary, with riverine inputs from the Detroit and Maumee Rivers mixing together and creating gradients in chemical and physical conditions. This study was driven by two questions: How does secondary production and food quality for consumers vary across this large mixing zone? and Are there correlations between cyanobacterial abundance and secondary production or food quality for consumers? Measuring spatial and temporal variation in secondary production and food quality is difficult for a variety of logistical reasons, so here a common consumer approach was used. In a common consumer approach, individuals of a single species are raised under similar conditions until placed in the field across environmental gradients of interest. After some period of exposure, the response of that common consumer is measured to provide an index of spatial variation in conditions. Here, a freshwater mussel (Lampsilis siliquoidea) was deployed at 32 locations that spanned habitat types and a gradient in cyanobacterial abundance in the western basin of Lake Erie to measure spatial variation in growth (an index of secondary production) and fatty acid (FA) content (an index of food quality). We found secondary production was highest within the Maumee rivermouth and lowest in the open waters of the lake. Mussel tissues in the Maumee rivermouth also included more eicosapentaenoic and docosapentaenoic fatty acids (EPA and DPA, respectively), but fewer bacterial FAs, suggesting more algae at the base of the food web in the Maumee rivermouth compared to open lake sites. The satellite-derived estimate of cyanobacterial abundance was not correlated to secondary production, but was positively related to EPA and DPA content in the

  3. Measuring spatial variation in secondary production and food quality using a common consumer approach in Lake Erie.

    PubMed

    Larson, James H; Richardson, William B; Evans, Mary Anne; Schaeffer, Jeff; Wynne, Timothy; Bartsch, Michelle; Bartsch, Lynn; Nelson, John C; Vallazza, Jon

    2016-04-01

    Lake Erie is a large lake straddling the border of the USA and Canada that has become increasingly eutrophic in recent years. Eutrophication is particularly focused in the shallow western basin. The western basin of Lake Erie is hydrodynamically similar to a large estuary, with riverine inputs from the Detroit and Maumee Rivers mixing together and creating gradients in chemical and physical conditions. This study was driven by two questions: (1) How does secondary production and food quality for consumers vary across this large mixing zone? and (2) Are there correlations between cyanobacterial abundance and secondary production or food quality for consumers? Measuring spatial and temporal variation in secondary production and food quality is difficult for a variety of logistical reasons, so here a common consumer approach was used. In a common consumer approach, individuals of a single species are raised under similar conditions until placed in the field across environmental gradients of interest. After some period of exposure, the response of that common consumer is measured to provide an index of spatial variation in conditions. Here, a freshwater mussel (Lampsilis siliquoidea) was deployed at 32 locations that spanned habitat types and a gradient in cyanobacterial abundance in the western basin of Lake Erie to measure spatial variation in growth (an index of secondary production) and fatty acid (FA) content (an index of food quality). We found secondary production was highest within the Maumee river mouth and lowest in the open waters of the lake. Mussel tissues in the Maumee river mouth also included more eicosapentaenoic and docosapentaenoic fatty acids (EPA and DPA, respectively), but fewer bacterial FAs, suggesting more algae at the base of the food web in the Maumee river mouth compared to open lake sites. The satellite-derived estimate of cyanobacterial abundance was not correlated to secondary production, but was positively related to EPA and DPA content

  4. The Origin of the Metal-Poor Common Proper Motion Pair HD 134439/134440: Insights from New Elemental Abundances

    NASA Astrophysics Data System (ADS)

    Chen, Yu; King, Jeremy R.; Boesgaard, Ann M.

    2014-11-01

    The low [α/Fe] ratio in the metal-poor ([Fe/H] ~ -1.50) common proper motion pair HD 134439 and HD 134440 has been variously attributed to chemical evolution in an extragalactic environment with an irregular star formation history, planetesimal accretion, and formation in an environment with an unusually high dust-to-gas ratio. We explore these various putative origins using CNO, Be, Ag, and Eu abundances derived from high-resolution near-UV Keck/HIRES spectroscopy. While we confirm a previously suggested correlation between elemental abundance ratios and condensation temperature at the 95% confidence level, these ratios lie within the continuum of values manifested by extant dSph data. We argue that the most plausible origin of our stars' distinctive abundance distribution relative to the Galactic halo field is formation in an environment chemically dominated by products of Type II SN of low progenitor mass; such a progenitor mass bias has been previously suggested as an explanation of low α-element ratios of dSph stars. The proper motion pair's heavy-to-light n-capture element ratio, which is >=0.3-0.5 dex lower than in the Galactic halo field and dSph stars, is discussed in the context of the truncated r-process, phenomenological n-capture production models, and α-rich freezeout in a high neutron excess environment; the latter simultaneously provides an attractive explanation of the difference in [Ca, Ti/O, Mg, Si] ratio in HD 134439/134440 compared to in situ dSph stars.

  5. [Spatial distribution pattern and allometric growth of three common species on moving sand dunes in Horqin Sandy Land, China].

    PubMed

    Jia, Mei-yu; Li, Xue-hua; Oh, Choong-hyeon; Park, Hong-chul; Miao, Chun-ping; Han, Xu

    2015-10-01

    Research on fine scale pattern and characteristics of allometric growth could contribute to better understanding plants' adaptation in moving sandy dunes. The abundance, height and biomass of 3 species Agriophilum aquarrosum, Corispermum candelabrum and Setaria viridis in twenty-eight 1 m x 1 m quadrats of Horqin Sandy Land were identified, mapped and described. The nearest neighbor method and O-ring O(r) function analysis were applied to analyze the spatial patterns. The results showed that the individual spatial pattern was mainly aggregated in 1 m x 1 m quadrat at community level but mainly random at population level. At 0-50 cm individual distance scale, both intraspecific and interspecific relationship were facilitation and aggregated distribution occurred at some scales and varied with increasing plant abundance in 1 m x 1 m quadrat. In 0-40 cm, the aggregated distribution of S. viridis and A. aquarrosum increased obviously; in 10-20 cm, both intraspecific and interspecific aggregation increased; in 10-30 cm, the occurrence possibility of positive correlations between S. viridis and A. aquarrosum, S. viridis and C. candelabrum all increased; in 40-50 cm, the possibility of positive correlations between A. squarrosum and S. viridis, A. squarrosum and C. candelabrum all increased. Research on the three species components indicated that the growth rate of above-ground was faster than that of underground. S. viridis had the highest ratio of under-ground biomass to above-ground biomass but its nutritional organs' biomass ratio was medium. C. candelabrum allocated more biomass to propagative organs and stem, but A. squarrosum allocated more biomass to nutritional organs. Based on the spatial distribution and allometric characteristics, the three common species in moving sand dunes preferred r strategy in their life history. PMID:26995902

  6. Joint source separation of simultaneous EEG-fMRI recording in two experimental conditions using common spatial patterns.

    PubMed

    Tan, Ao; Fu, Zening; Tu, Yiheng; Hung, Yeung Sam; Zhang, Zhiguo

    2015-01-01

    Simultaneous collection of electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) data has become increasingly popular in neuroscientific studies, because it can provide neural information with both high spatial and temporal resolution. In order to maximally utilize the information contained in simultaneous EEG-fMRI recording, many sophisticated multimodal data-mining methods, such as joint ICA, have been developed. However, these methods normally deal with data recorded in one experimental condition, and they cannot effectively extract information on activities that are distinct in two conditions. In this paper, a new data decomposition method called joint common spatial pattern (jCSP) is proposed. Compared with previous methods, the jCSP method exploits inter-conditional difference in the strength of brain source activities to achieve source separation, and is able to uncover the source activities with the strongest discriminative power. A group analysis based on clustering is further proposed to reveal distinctive jCSP patterns at group level. We applied joint CSP to a simultaneous EEG-fMRI dataset collected from 21 subjects under two different resting-state conditions (eyes-closed and eyes-open). Results show a distinct dynamic pattern shared by EEG alpha power and fMRI signal during eyes-open resting-state. PMID:26736832

  7. Shared clonality in distinctive lesions of lymphomatoid papulosis and mycosis fungoides occurring in the same patients suggests a common origin.

    PubMed

    de la Garza Bravo, Maria M; Patel, Keyur P; Loghavi, Sanam; Curry, Jonathan L; Torres Cabala, Carlos A; Cason, Ronald C; Gangar, Pamela; Prieto, Victor G; Medeiros, L Jeffrey; Duvic, Madeleine; Tetzlaff, Michael T

    2015-04-01

    Lymphomatoid papulosis (LyP) lies within the spectrum of primary cutaneous CD30-positive lymphoproliferative disorders. Approximately 10% to 15% of patients with LyP develop other lymphomas, most commonly mycosis fungoides (MF), suggesting a biological relationship between these distinctive diseases. Here, we describe the clinical and histopathologic features of 11 patients who had both LyP and MF, including a total of 30 biopsy specimens (14 LyP and 16 MF). Clinically, LyP lesions were characterized by clustered papules undergoing spontaneous regression and were classified as type A (n = 11), type C (n = 2), or type D (n = 1). All cases of MF were characterized clinically by patch/plaque disease, were stage I or II at the time of diagnosis, and consisted of a CD4-predominant epidermotropic T-cell infiltrate. We used polymerase chain reaction-based methods to assess the TCR-β chain (TCRB) and TCR-γ chain (TCRG) in both LyP and MF lesions of all patients. Monoclonal TCR gene rearrangements were detected in 13 LyP lesions from 10 of 11 patients and in 14 MF lesions from 10 of 11 patients. All 10 patients in whom their skin lesions carried monoclonal TCR gene rearrangements exhibited overlapping clones in both their LyP and MF lesions; additional non-overlapping clones were identified in 3 LyP lesions from 2 patients and 1 MF lesion from another patient. The demonstration of shared monoclonal T-cell receptor gene rearrangements in LyP and MF lesions in almost all patients suggests a common origin between these distinctive clinicopathological diseases.

  8. Multivariate spatial analyses of the distribution and origin of trace and major elements in soils surrounding a secondary lead smelter.

    PubMed

    Schneider, Arnaud R; Morvan, Xavier; Saby, Nicolas P A; Cancès, Benjamin; Ponthieu, Marie; Gommeaux, Maxime; Marin, Béatrice

    2016-08-01

    Major and trace elements in soils originate from natural processes and different anthropogenic activities which are difficult to discriminate. On a 17-ha impacted site in northern France, two industrial sources of soil contamination were xidentified: a former iron foundry and a current secondary lead smelter. To discriminate and map natural and anthropogenic sources of major and trace elements on this site, the rarely applied MULTISPATI-principal component analysis (PCA) method was used. Using a 20-m × 20-m grid, 247 topsoil horizons were sampled and analysed with a field-portable X-ray fluorescence analyser for screening soil contamination. The study site was heavily contaminated with Pb and, to a lesser degree, with Sn. Summary statistics and enrichment factors allowed the differentiation of the main lithogenic or anthropogenic origin of the elements. The MULTISPATI-PCA method, which explained 73.9 % of the variability with the three first factors, evidenced strong spatial structures. Those spatial structures were attributed to different natural and artificial processes in the study area. The first axis can be interpreted as a lithogenic effect. Axes 2 and 3 reflect the two different contamination sources. Pb, Sn and S originated from the secondary lead smelter while Fe and Ca were mainly derived from the old iron foundry activity and the old railway built with foundry sand. This study demonstrated that the MULTISPATI-PCA method can be successfully used to investigate multicontaminated sites to discriminate the various sources of contamination.

  9. Multivariate spatial analyses of the distribution and origin of trace and major elements in soils surrounding a secondary lead smelter.

    PubMed

    Schneider, Arnaud R; Morvan, Xavier; Saby, Nicolas P A; Cancès, Benjamin; Ponthieu, Marie; Gommeaux, Maxime; Marin, Béatrice

    2016-08-01

    Major and trace elements in soils originate from natural processes and different anthropogenic activities which are difficult to discriminate. On a 17-ha impacted site in northern France, two industrial sources of soil contamination were xidentified: a former iron foundry and a current secondary lead smelter. To discriminate and map natural and anthropogenic sources of major and trace elements on this site, the rarely applied MULTISPATI-principal component analysis (PCA) method was used. Using a 20-m × 20-m grid, 247 topsoil horizons were sampled and analysed with a field-portable X-ray fluorescence analyser for screening soil contamination. The study site was heavily contaminated with Pb and, to a lesser degree, with Sn. Summary statistics and enrichment factors allowed the differentiation of the main lithogenic or anthropogenic origin of the elements. The MULTISPATI-PCA method, which explained 73.9 % of the variability with the three first factors, evidenced strong spatial structures. Those spatial structures were attributed to different natural and artificial processes in the study area. The first axis can be interpreted as a lithogenic effect. Axes 2 and 3 reflect the two different contamination sources. Pb, Sn and S originated from the secondary lead smelter while Fe and Ca were mainly derived from the old iron foundry activity and the old railway built with foundry sand. This study demonstrated that the MULTISPATI-PCA method can be successfully used to investigate multicontaminated sites to discriminate the various sources of contamination. PMID:27094274

  10. Molecular markers reveal spatially segregated cryptic species in a critically endangered fish, the common skate (Dipturus batis).

    PubMed

    Griffiths, Andrew M; Sims, David W; Cotterell, Stephen P; El Nagar, Aliya; Ellis, Jim R; Lynghammar, Arve; McHugh, Matthew; Neat, Francis C; Pade, Nicolas G; Queiroz, Nuno; Serra-Pereira, Bárbara; Rapp, Toby; Wearmouth, Victoria J; Genner, Martin J

    2010-05-22

    Many sharks and skates are particularly vulnerable to overfishing because of their large size, slow growth, late maturity and low fecundity. In Europe dramatic population declines have taken place in common skate (Dipturus batis L.), one of the largest demersal fish in regional shelf seas, leading to extirpations from substantial parts of its former range. Here we report the discovery of cryptic species in common skate collected from the northeast Atlantic continental shelf. Data from nuclear microsatellite markers indicated two clearly distinct clades and phylogenetic analysis of mitochondrial DNA sequences demonstrated monophyly of each one of them. Capture locations showed evidence of strong spatial segregation, with one taxon occurring mainly in waters off the southern British Isles and around Rockall, while the other was restricted to more northerly shelf waters. These apparently cryptic species showed overlapping substrate and depth preferences, but distributional limits were closely related to temperature gradients, potentially indicating thermal limits to their distributions. This discovery of hidden diversity within a large, critically endangered marine vertebrate demonstrates how marine biodiversity can be underestimated, even in such a relatively well-studied and heavily exploited region. PMID:20106849

  11. Molecular markers reveal spatially segregated cryptic species in a critically endangered fish, the common skate (Dipturus batis).

    PubMed

    Griffiths, Andrew M; Sims, David W; Cotterell, Stephen P; El Nagar, Aliya; Ellis, Jim R; Lynghammar, Arve; McHugh, Matthew; Neat, Francis C; Pade, Nicolas G; Queiroz, Nuno; Serra-Pereira, Bárbara; Rapp, Toby; Wearmouth, Victoria J; Genner, Martin J

    2010-05-22

    Many sharks and skates are particularly vulnerable to overfishing because of their large size, slow growth, late maturity and low fecundity. In Europe dramatic population declines have taken place in common skate (Dipturus batis L.), one of the largest demersal fish in regional shelf seas, leading to extirpations from substantial parts of its former range. Here we report the discovery of cryptic species in common skate collected from the northeast Atlantic continental shelf. Data from nuclear microsatellite markers indicated two clearly distinct clades and phylogenetic analysis of mitochondrial DNA sequences demonstrated monophyly of each one of them. Capture locations showed evidence of strong spatial segregation, with one taxon occurring mainly in waters off the southern British Isles and around Rockall, while the other was restricted to more northerly shelf waters. These apparently cryptic species showed overlapping substrate and depth preferences, but distributional limits were closely related to temperature gradients, potentially indicating thermal limits to their distributions. This discovery of hidden diversity within a large, critically endangered marine vertebrate demonstrates how marine biodiversity can be underestimated, even in such a relatively well-studied and heavily exploited region.

  12. Electronic origin of spatial self-phase modulation: Evidenced by comparing graphite with C60 and graphene

    NASA Astrophysics Data System (ADS)

    Wu, Y. L.; Zhu, L. L.; Wu, Q.; Sun, F.; Wei, J. K.; Tian, Y. C.; Wang, W. L.; Bai, X. D.; Zuo, Xu; Zhao, Jimin

    2016-06-01

    We report unambiguous observation of spatial self-phase modulation (SSPM) in a dispersive suspension of graphite flakes. This coherent nonlinear optical effect in bulk graphite is found to be broadband and large, with a third-order nonlinear susceptibility χ(3) of 2.2 × 10-9 esu (i.e., 3.1 × 10-17 m2/V2 in SI units) at 532 nm excitation. Comparison with other carbon allotropes shows that this value is 5 × 107 times higher than that of C60 but ˜50 times lower than that of graphene, fully exhibiting the electronic origin of SSPM.

  13. A common evolutionary origin for the ON- and OFF-edge motion detection pathways of the Drosophila visual system

    PubMed Central

    Shinomiya, Kazunori; Takemura, Shin-ya; Rivlin, Patricia K.; Plaza, Stephen M.; Scheffer, Louis K.; Meinertzhagen, Ian A.

    2015-01-01

    Synaptic circuits for identified behaviors in the Drosophila brain have typically been considered from either a developmental or functional perspective without reference to how the circuits might have been inherited from ancestral forms. For example, two candidate pathways for ON- and OFF-edge motion detection in the visual system act via circuits that use respectively either T4 or T5, two cell types of the fourth neuropil, or lobula plate (LOP), that exhibit narrow-field direction-selective responses and provide input to wide-field tangential neurons. T4 or T5 both have four subtypes that terminate one each in the four strata of the LOP. Representatives are reported in a wide range of Diptera, and both cell types exhibit various similarities in: (1) the morphology of their dendritic arbors; (2) their four morphological and functional subtypes; (3) their cholinergic profile in Drosophila; (4) their input from the pathways of L3 cells in the first neuropil, or lamina (LA), and by one of a pair of LA cells, L1 (to the T4 pathway) and L2 (to the T5 pathway); and (5) their innervation by a single, wide-field contralateral tangential neuron from the central brain. Progenitors of both also express the gene atonal early in their proliferation from the inner anlage of the developing optic lobe, being alone among many other cell type progeny to do so. Yet T4 receives input in the second neuropil, or medulla (ME), and T5 in the third neuropil or lobula (LO). Here we suggest that these two cell types were originally one, that their ancestral cell population duplicated and split to innervate separate ME and LO neuropils, and that a fiber crossing—the internal chiasma—arose between the two neuropils. The split most plausibly occurred, we suggest, with the formation of the LO as a new neuropil that formed when it separated from its ancestral neuropil to leave the ME, suggesting additionally that ME input neurons to T4 and T5 may also have had a common origin. PMID:26217193

  14. The origin of Metazoa: a transition from temporal to spatial cell differentiation.

    PubMed

    Mikhailov, Kirill V; Konstantinova, Anastasiya V; Nikitin, Mikhail A; Troshin, Peter V; Rusin, Leonid Yu; Lyubetsky, Vassily A; Panchin, Yuri V; Mylnikov, Alexander P; Moroz, Leonid L; Kumar, Sudhir; Aleoshin, Vladimir V

    2009-07-01

    For over a century, Haeckel's Gastraea theory remained a dominant theory to explain the origin of multicellular animals. According to this theory, the animal ancestor was a blastula-like colony of uniform cells that gradually evolved cell differentiation. Today, however, genes that typically control metazoan development, cell differentiation, cell-to-cell adhesion, and cell-to-matrix adhesion are found in various unicellular relatives of the Metazoa, which suggests the origin of the genetic programs of cell differentiation and adhesion in the root of the Opisthokonta. Multicellular stages occurring in the complex life cycles of opisthokont protists (mesomycetozoeans and choanoflagellates) never resemble a blastula. Here, we discuss a more realistic scenario of transition to multicellularity through integration of pre-existing transient cell types into the body of an early metazoon, which possessed a complex life cycle with a differentiated sedentary filter-feeding trophic stage and a non-feeding blastula-like larva, the synzoospore. Choanoflagellates are considered as forms with secondarily simplified life cycles.

  15. High-3He plume origin and temporal-spatial evolution of the Siberian flood basalts

    USGS Publications Warehouse

    Basu, A.R.; Poreda, R.J.; Renne, P.R.; Teichmann, F.; Vasiliev, Y.R.; Sobolev, N.V.; Turrin, B.D.

    1995-01-01

    An olivine nephelinite from the lower part of a thick alkalic ultrabasic and mafic sequence of volcanic rocks of the northeastern part of the Siberian flood basalt province (SFBP) yielded a 40ArX39Ar plateau age of 253.3 ?? 2.6 million years, distinctly older than the main tholeiitic pulse of the SFBP at 250.0 million years. Olivine phenocrysts of this rock showed 3He/4He ratios up to 12.7 times the atmospheric ratio; these values suggest a lower mantle plume origin. The neodymium and strontium isotopes, rare earth element concentration patterns, and cerium/lead ratios of the associated rocks were also consistent with their derivation from a near-cnondritic, primitive plume. Geochemical data from the 250-million-year-old volcanic rocks higher up in the sequence indicate interaction of this high-3He SFBP plume with a suboceanic-type upper mantle beneath Siberia.

  16. High-3He Plume Origin and Temporal-Spatial Evolution of the Siberian Flood Basalts.

    PubMed

    Basu, A R; Poreda, R J; Renne, P R; Teichmann, F; Vasiliev, Y R; Sobolev, N V; Turrin, B D

    1995-08-11

    An olivine nephelinite from the lower part of a thick alkalic ultrabasic and mafic sequence of volcanic rocks of the northeastern part of the Siberian flood basalt province (SFBP) yielded a (40)Ar/(39)Ar plateau age of 253.3 +/- 2.6 million years, distinctly older than the main tholeiitic pulse of the SFBP at 250.0 million years. Olivine phenocrysts of this rock showed (3)He/(4)He ratios up to 12.7 times the atmospheric ratio; these values suggest a lower mantle plume origin. The neodymium and strontium isotopes, rare earth element concentration patterns, and cerium/lead ratios of the associated rocks were also consistent with their derivation from a near-chondritic, primitive plume. Geochemical data from the 250-million-year-old volcanic rocks higher up in the sequence indicate interaction of this high-(3)He SFBP plume with a suboceanic-type upper mantle beneath Siberia.

  17. A co-adaptive sensory motor rhythms Brain-Computer Interface based on common spatial patterns and Random Forest.

    PubMed

    Schwarz, Andreas; Scherer, Reinhold; Steyrl, David; Faller, Josef; Muller-Putz, Gernot R

    2015-08-01

    Sensorimotor rhythm (SMR) based Brain-Computer Interfaces (BCI) typically require lengthy user training. This can be exhausting and fatiguing for the user as data collection may be monotonous and typically without any feedback for user motivation. Hence new ways to reduce user training and improve performance are needed. We recently introduced a two class motor imagery BCI system which continuously adapted with increasing run-time to the brain patterns of the user. The system was designed to provide visual feedback to the user after just five minutes. The aim of the current work was to improve user-specific online adaptation, which was expected to lead to higher performances. To maximize SMR discrimination, the method of filter-bank common spatial patterns (fbCSP) and Random Forest (RF) classifier were combined. In a supporting online study, all volunteers performed significantly better than chance. Overall peak accuracy of 88.6 ± 6.1 (SD) % was reached, which significantly exceeded the performance of our previous system by 13%. Therefore, we consider this system the next step towards fully auto-calibrating motor imagery BCIs. PMID:26736445

  18. Spatial and Temporal Dynamics of Flora in Forest, Grassland and Common Land Ecosystems of Western Chitwan, Nepal

    PubMed Central

    DANGOL, Dharma Raj; MAHARJAN, Keshav Lall

    2013-01-01

    This paper describes changes of species composition and population of flora in space and time in western Chitwan, Nepal. This paper also discusses on the changes in flora due to flood and human activities. To illustrate these changes, we used survey data collected from January to April of 1996, 2000, and 2007 from the Barandabhar forest, National Park forest and the forests along the Narayani River banks, grasslands of National Park and common lands of western Chitwan as a part of longitudinal study on “reciprocal relation of population and the environment”. From these data, density values were calculated to analyze spatial and temporal changes in flora species composition and population. We also noted the changes of top species in time and space in due course of time. If the species and its rank not changed, their densities (population) values of flora species changed. We found that changes in species composition, population, appearance or disappearance of flora from a particular space (research plot) were noted as a result of natural forces or human activities. PMID:25061414

  19. Spatial and Temporal Dynamics of Flora in Forest, Grassland and Common Land Ecosystems of Western Chitwan, Nepal.

    PubMed

    Dangol, Dharma Raj; Maharjan, Keshav Lall

    2012-06-30

    This paper describes changes of species composition and population of flora in space and time in western Chitwan, Nepal. This paper also discusses on the changes in flora due to flood and human activities. To illustrate these changes, we used survey data collected from January to April of 1996, 2000, and 2007 from the Barandabhar forest, National Park forest and the forests along the Narayani River banks, grasslands of National Park and common lands of western Chitwan as a part of longitudinal study on "reciprocal relation of population and the environment". From these data, density values were calculated to analyze spatial and temporal changes in flora species composition and population. We also noted the changes of top species in time and space in due course of time. If the species and its rank not changed, their densities (population) values of flora species changed. We found that changes in species composition, population, appearance or disappearance of flora from a particular space (research plot) were noted as a result of natural forces or human activities.

  20. Motor Imagery Classification Using Mu and Beta Rhythms of EEG with Strong Uncorrelating Transform Based Complex Common Spatial Patterns

    PubMed Central

    Ryu, Jiwoo; Kim, Ko Keun; Mandic, Danilo P.

    2016-01-01

    Recent studies have demonstrated the disassociation between the mu and beta rhythms of electroencephalogram (EEG) during motor imagery tasks. The proposed algorithm in this paper uses a fully data-driven multivariate empirical mode decomposition (MEMD) in order to obtain the mu and beta rhythms from the nonlinear EEG signals. Then, the strong uncorrelating transform complex common spatial patterns (SUTCCSP) algorithm is applied to the rhythms so that the complex data, constructed with the mu and beta rhythms, becomes uncorrelated and its pseudocovariance provides supplementary power difference information between the two rhythms. The extracted features using SUTCCSP that maximize the interclass variances are classified using various classification algorithms for the separation of the left- and right-hand motor imagery EEG acquired from the Physionet database. This paper shows that the supplementary information of the power difference between mu and beta rhythms obtained using SUTCCSP provides an important feature for the classification of the left- and right-hand motor imagery tasks. In addition, MEMD is proved to be a preferred preprocessing method for the nonlinear and nonstationary EEG signals compared to the conventional IIR filtering. Finally, the random forest classifier yielded a high performance for the classification of the motor imagery tasks. PMID:27795702

  1. Origin and spatial-temporal distribution of faecal bacteria in a bay of Lake Geneva, Switzerland.

    PubMed

    Poté, John; Goldscheider, Nico; Haller, Laurence; Zopfi, Jakob; Khajehnouri, Fereidoun; Wildi, Walter

    2009-07-01

    The origin and distribution of microbial contamination in Lake Geneva's most polluted bay were assessed using faecal indicator bacteria (FIB). The lake is used as drinking water, for recreation and fishing. During 1 year, water samples were taken at 23 points in the bay and three contamination sources: a wastewater treatment plant (WWTP), a river and a storm water outlet. Analyses included Escherichia coli, enterococci (ENT), total coliforms (TC), and heterotrophic plate counts (HPC). E. coli input flux rates from the WWTP can reach 2.5 x 10(10) CFU/s; those from the river are one to three orders of magnitude lower. Different pathogenic Salmonella serotypes were identified in water from these sources. FIB levels in the bay are highly variable. Results demonstrate that (1) the WWTP outlet at 30 m depth impacts near-surface water quality during holomixis in winter; (2) when the lake is stratified, the effluent water is generally trapped below the thermocline; (3) during major floods, upwelling across the thermocline may occur; (4) the river permanently contributes to contamination, mainly near the river mouth and during floods, when the storm water outlet contributes additionally; (5) the lowest FIB levels in the near-surface water occur during low-flow periods in the bathing season.

  2. ORIGIN OF SPATIAL VARIATIONS OF SCATTERING POLARIZATION IN THE WINGS OF THE Ca I 4227 A line

    SciTech Connect

    Sampoorna, M.; Nagendra, K. N.; Anusha, L. S.; Stenflo, J. O.; Bianda, M.; Ramelli, R.

    2009-07-10

    Polarization that is produced by coherent scattering can be modified by magnetic fields via the Hanle effect. This has opened a window to explorations of solar magnetism in parameter domains not accessible to the Zeeman effect. According to standard theory the Hanle effect should only be operating in the Doppler core of spectral lines but not in the wings. In contrast, our observations of the scattering polarization in the Ca I 4227 A line reveal the existence of spatial variations of the scattering polarization throughout the far line wings. This raises the question whether the observed spatial variations in wing polarization have a magnetic or nonmagnetic origin. A magnetic origin may be possible if elastic collisions are able to cause sufficient frequency redistribution to make the Hanle effect effective in the wings without causing excessive collisional depolarization, as suggested by recent theories for partial frequency redistribution (PRD) with coherent scattering in magnetic fields. To model the wing polarization we bypass the problem of solving the full polarized radiative transfer equations and instead apply an extended version of the technique based on the 'last scattering approximation'. It assumes that the polarization of the emergent radiation is determined by the anisotropy of the incident radiation field at the last scattering event. We determine this anisotropy from the observed limb darkening as a function of wavelength throughout the spectral line. The empirical anisotropy profile is used together with the single-scattering redistribution matrix, which contains all the PRD, collisional, and magnetic field effects. The model further contains a continuum opacity parameter, which increasingly dilutes the polarized line photons as we move away from the line center, and a continuum polarization parameter that represents the observed polarization level far from the line. This model is highly successful in reproducing the observed Stokes Q

  3. The Origin of Spatial and Temporal Geochemical Variations in the Central American Volcanic Arc

    NASA Astrophysics Data System (ADS)

    Hoernle, K.; Heydolph, K.; Sadofsky, S.; Lissinna, B.; Hauff, F.; van den Bogaard, P.

    2006-12-01

    Variations in age and composition of the subduction input, slab dip, crustal thickness and crustal composition are likely to be the major controls on spatial and temporal variations along the Central American Volcanic Arc (CAVA). Our extensive new geochemical data set from volcanic rocks and olivine-hosted melt inclusions, combined with published data, shows systematic variations along two sections of the CAVA. Along the volcanic front (VF) from NW Nicaragua to Guatemala and across the arc from El Salvador to Honduras, variations in trace element (e.g. decrease in Ba/La and U/Th and increase in La/Yb) and isotopic composition (decrease in 143Nd/144Nd and increase in 206Pb/204Pb) suggest a decreasing role for a hydrous fluid component and an increasing role of a sediment melt component in the arc magmas to the NW along the VF and behind the VF. Since the age and composition of the subduction input are similar along this part of the arc, the decreasing slab dip angle, increase in crustal thickness and/or transition from mafic oceanic to evolved continental type basement are likely to control the observed geochemical variations. From NW Nicaragua to central Costa Rica, the most mafic lavas and melt inclusions show an increase in SiO2, La/Yb and 206Pb/204Pb and a decrease in FeO*, Ba/La, U/Th and 143Nd/144Nd, consistent with an increasing role of hydrous melts with Galapagos hotspot-type geochemical signatures contributing to the arc magmas to the SE. These geochemical variations correlate with an increasing overprinting of the incoming Cocos Plate by the Galapagos hotspot. There is a dramatic increase in Pb isotopic composition beginning at Arenal, which is coincident with the projection of the northern morphological boundary of the subducting Galapagos hotspot track. The fluid-mobile nature of Pb and the high Pb concentrations in the arc magmas indicate that the Pb isotopic composition (and the other geochemical variations) is primarily controlled by the subduction

  4. Estimating Common Growth Patterns in Juvenile Chinook Salmon (Oncorhynchus tshawytscha) from Diverse Genetic Stocks and a Large Spatial Extent

    PubMed Central

    Scheuerell, Mark D.; Simenstad, Charles A.; Bottom, Daniel L.

    2016-01-01

    Life history variation in Pacific salmon (Oncorhynchus spp.) supports species resilience to natural disturbances and fishery exploitation. Within salmon species, life-history variation often manifests during freshwater and estuarine rearing, as variation in growth. To date, however, characterizing variability in growth patterns within and among individuals has been difficult via conventional sampling methods because of the inability to obtain repeated size measurements. In this study we related otolith microstructures to growth rates of individual juvenile Chinook salmon (O. tshawytscha) from the Columbia River estuary over a two-year period (2010–2012). We used dynamic factor analysis to determine whether there were common patterns in growth rates within juveniles based on their natal region, capture location habitat type, and whether they were wild or of hatchery origin. We identified up to five large-scale trends in juvenile growth rates depending on month and year of capture. We also found that hatchery fish had a narrower range of trend loadings for some capture groups, suggesting that hatchery fish do not express the same breadth of growth variability as wild fish. However, we were unable to resolve a relationship between specific growth patterns and habitat transitions. Our study exemplifies how a relatively new statistical analysis can be applied to dating or aging techniques to summarize individual variation, and characterize aspects of life history diversity. PMID:27695094

  5. Spatial distribution of ice blocks on Enceladus and implications for their origin and emplacement

    NASA Astrophysics Data System (ADS)

    Martens, Hilary R.; Ingersoll, Andrew P.; Ewald, Shawn P.; Helfenstein, Paul; Giese, Bernd

    2015-01-01

    We have mapped the locations of over 100,000 ice blocks across the south polar region of Saturn's moon Enceladus, thus generating the first quantitative estimates of ice-block number density distribution in relation to major geological features. Ice blocks were manually identified and mapped from twenty of the highest resolution (4-25 m per pixel) Cassini Imaging Science Subsystem (ISS) narrow-angle images using ArcGIS software. The 10-100 m-diameter positive-relief features are marginally visible at the resolution of the images, making ice-block identifications difficult but not impossible. Our preliminary results reveal that ice blocks in the southern hemisphere are systematically most concentrated within the geologically active South Polar Terrain (SPT) and exhibit peak concentrations within 20 km of the tiger-stripe fractures as well as close to the south pole. We find that ice blocks are concentrated just as heavily between tiger-stripe fractures as on the directly adjacent margins; although significant local fluctuations in ice-block number density do occur, we observe no clear pattern with respect to the tiger stripes or jet sources. We examine possible roles of several mechanisms for ice-block origin, emplacement, and evolution: impact cratering, ejection from fissures during cryovolcanic eruptions, tectonic disruption of lithospheric ice, mass wasting, seismic disturbance, and vapor condensation around icy fumeroles. We conclude that impact cratering as well as mass wasting, perhaps triggered by seismic events, cannot account for a majority of ice-block features within the inner SPT. The pervasiveness of fracturing at many size scales, the ubiquity of ice blocks in the inner SPT, as well as the occurrence of linear block arrangements that parallel through-cutting crack networks along the flanks of tiger stripes indicate that tectonic deformation is an important source of blocky-ice features in the SPT. Ejection during catastrophic cryovolcanic eruptions

  6. Examining Temporal Sample Scale and Model Choice with Spatial Capture-Recapture Models in the Common Leopard Panthera pardus.

    PubMed

    Goldberg, Joshua F; Tempa, Tshering; Norbu, Nawang; Hebblewhite, Mark; Mills, L Scott; Wangchuk, Tshewang R; Lukacs, Paul

    2015-01-01

    Many large carnivores occupy a wide geographic distribution, and face threats from habitat loss and fragmentation, poaching, prey depletion, and human wildlife-conflicts. Conservation requires robust techniques for estimating population densities and trends, but the elusive nature and low densities of many large carnivores make them difficult to detect. Spatial capture-recapture (SCR) models provide a means for handling imperfect detectability, while linking population estimates to individual movement patterns to provide more accurate estimates than standard approaches. Within this framework, we investigate the effect of different sample interval lengths on density estimates, using simulations and a common leopard (Panthera pardus) model system. We apply Bayesian SCR methods to 89 simulated datasets and camera-trapping data from 22 leopards captured 82 times during winter 2010-2011 in Royal Manas National Park, Bhutan. We show that sample interval length from daily, weekly, monthly or quarterly periods did not appreciably affect median abundance or density, but did influence precision. We observed the largest gains in precision when moving from quarterly to shorter intervals. We therefore recommend daily sampling intervals for monitoring rare or elusive species where practicable, but note that monthly or quarterly sample periods can have similar informative value. We further develop a novel application of Bayes factors to select models where multiple ecological factors are integrated into density estimation. Our simulations demonstrate that these methods can help identify the "true" explanatory mechanisms underlying the data. Using this method, we found strong evidence for sex-specific movement distributions in leopards, suggesting that sexual patterns of space-use influence density. This model estimated a density of 10.0 leopards/100 km2 (95% credibility interval: 6.25-15.93), comparable to contemporary estimates in Asia. These SCR methods provide a guide to

  7. Examining Temporal Sample Scale and Model Choice with Spatial Capture-Recapture Models in the Common Leopard Panthera pardus.

    PubMed

    Goldberg, Joshua F; Tempa, Tshering; Norbu, Nawang; Hebblewhite, Mark; Mills, L Scott; Wangchuk, Tshewang R; Lukacs, Paul

    2015-01-01

    Many large carnivores occupy a wide geographic distribution, and face threats from habitat loss and fragmentation, poaching, prey depletion, and human wildlife-conflicts. Conservation requires robust techniques for estimating population densities and trends, but the elusive nature and low densities of many large carnivores make them difficult to detect. Spatial capture-recapture (SCR) models provide a means for handling imperfect detectability, while linking population estimates to individual movement patterns to provide more accurate estimates than standard approaches. Within this framework, we investigate the effect of different sample interval lengths on density estimates, using simulations and a common leopard (Panthera pardus) model system. We apply Bayesian SCR methods to 89 simulated datasets and camera-trapping data from 22 leopards captured 82 times during winter 2010-2011 in Royal Manas National Park, Bhutan. We show that sample interval length from daily, weekly, monthly or quarterly periods did not appreciably affect median abundance or density, but did influence precision. We observed the largest gains in precision when moving from quarterly to shorter intervals. We therefore recommend daily sampling intervals for monitoring rare or elusive species where practicable, but note that monthly or quarterly sample periods can have similar informative value. We further develop a novel application of Bayes factors to select models where multiple ecological factors are integrated into density estimation. Our simulations demonstrate that these methods can help identify the "true" explanatory mechanisms underlying the data. Using this method, we found strong evidence for sex-specific movement distributions in leopards, suggesting that sexual patterns of space-use influence density. This model estimated a density of 10.0 leopards/100 km2 (95% credibility interval: 6.25-15.93), comparable to contemporary estimates in Asia. These SCR methods provide a guide to

  8. Examining Temporal Sample Scale and Model Choice with Spatial Capture-Recapture Models in the Common Leopard Panthera pardus

    PubMed Central

    Goldberg, Joshua F.; Tempa, Tshering; Norbu, Nawang; Hebblewhite, Mark; Mills, L. Scott; Wangchuk, Tshewang R.; Lukacs, Paul

    2015-01-01

    Many large carnivores occupy a wide geographic distribution, and face threats from habitat loss and fragmentation, poaching, prey depletion, and human wildlife-conflicts. Conservation requires robust techniques for estimating population densities and trends, but the elusive nature and low densities of many large carnivores make them difficult to detect. Spatial capture-recapture (SCR) models provide a means for handling imperfect detectability, while linking population estimates to individual movement patterns to provide more accurate estimates than standard approaches. Within this framework, we investigate the effect of different sample interval lengths on density estimates, using simulations and a common leopard (Panthera pardus) model system. We apply Bayesian SCR methods to 89 simulated datasets and camera-trapping data from 22 leopards captured 82 times during winter 2010–2011 in Royal Manas National Park, Bhutan. We show that sample interval length from daily, weekly, monthly or quarterly periods did not appreciably affect median abundance or density, but did influence precision. We observed the largest gains in precision when moving from quarterly to shorter intervals. We therefore recommend daily sampling intervals for monitoring rare or elusive species where practicable, but note that monthly or quarterly sample periods can have similar informative value. We further develop a novel application of Bayes factors to select models where multiple ecological factors are integrated into density estimation. Our simulations demonstrate that these methods can help identify the “true” explanatory mechanisms underlying the data. Using this method, we found strong evidence for sex-specific movement distributions in leopards, suggesting that sexual patterns of space-use influence density. This model estimated a density of 10.0 leopards/100 km2 (95% credibility interval: 6.25–15.93), comparable to contemporary estimates in Asia. These SCR methods provide a guide

  9. Spatial and temporal variability of marine-origin matter along a transect from Zhongshan Station to Dome A, Eastern Antarctica.

    PubMed

    Li, Chuanjin; Xiao, Cunde; Shi, Guitao; Ding, Minghu; Qin, Dahe; Ren, Jiawen

    2016-08-01

    The spatiotemporal distribution pattern of marine-origin matter on the Antarctica ice sheet was used to study variations in the source regions, transport mechanisms and post-depositional influences. We present data on sea salt ions, sulfur components and stable isotopes from surface and snow pit samples collected along the transect route from Zhongshan Station to Dome A during the austral summer in 2012-2013. A general decreasing trend in the accumulation, sea salt ions and sulfur components occurred with increasing distance from the coast and increasing elevation. However, different sources of the marine components, transport pathways and post-depositional influences were responsible for their different spatial distribution patterns. The marine ions in the coastal snow pit varied seasonally, with higher sea salt ion concentrations in the winter and lower concentrations in the summer; the opposite pattern was found for the sulfur compounds. The sea ice area surrounding Antarctica was the main source region for the deposited sea salt and the open sea water for the sulfur compounds. No significant trends in the marine-origin components were detected during the past 3 decades. Several periods of elevated deposition of sea salt ions were associated with lower temperatures (based on δD and δ(18)O) or intensified wind fields. In comparison to the sea salt ions, the sulfur concentrations exhibited the opposite distribution patterns and were associated with changes in the surrounding sea ice extent. PMID:27521951

  10. Common origin of fermion mixing and geometrical CP violation, and its test through Higgs physics at the LHC.

    PubMed

    Bhattacharyya, Gautam; Varzielas, Ivo de Medeiros; Leser, Philipp

    2012-12-14

    We construct for the first time a flavor model, based on the smallest discrete symmetry Δ(27) that implements spontaneous CP violation with a complex phase of geometric origin, which can actually reproduce all quark masses and mixing data. We show that its scalar sector has exotic properties that can be tested at the LHC.

  11. Common multiple dsRNAs are present in populations of the fungus Discula destructiva originating from widely separated geographic locations.

    PubMed

    Rong, R; Rao, S; Scott, S W; Tainter, F H

    2001-02-01

    DsRNAs were detected in 85/108 isolates of Discula destructiva, the cause of dogwood anthracnose, collected in South Carolina, Idaho, and Alabama. The eastern isolates contained a greater diversity of dsRNA than did Idaho isolates, but most isolates, irrespective of state of origin, contained two small bands (ca. 1.5-2.5 kb) with sequence homology indicated by Northern hybridization. Differences in the banding patterns suggest that genetic diversity of dsRNA in D. destructiva is generated rapidly and that D. destructiva can be simultaneously infected by multiple dsRNA viruses.

  12. The origin of life and the last universal common ancestor: do we need a change of perspective?

    PubMed

    Glansdorff, Nicolas; Xu, Ying; Labedan, Bernard

    2009-09-01

    A complete tree with roots, trunk and crown remains an appropriate model to represent all steps of life's development, from the emergence of a unique genetic code up to the last universal common ancestor and its further radiation. Catalytic closure of a mixture of prebiotic polymers is a heuristic alternative to the RNA world. Conjectures about emergence of life in an infinite multiverse should not confuse probability with possibility. PMID:19524037

  13. Domestication patterns in common bean (Phaseolus vulgaris L.) and the origin of the Mesoamerican and Andean cultivated races.

    PubMed

    Chacón S, M I; Pickersgill, B; Debouck, D G

    2005-02-01

    Chloroplast DNA polymorphisms were studied by PCR sequencing and PCR-restriction fragment length polymorphism in 165 accessions of domesticated landraces of common bean from Latin America and the USA, 23 accessions of weedy beans, and 134 accessions of wild beans covering the entire geographic range of wild Phaseolus vulgaris. Fourteen chloroplast haplotypes were identified in wild beans, only five of which occur also in domesticated beans. The chloroplast data agree with those obtained from analyses based on morphology and isozymes and with other DNA polymorphisms in supporting independent domestications of common bean in Mesoamerica and the Andean region and in demonstrating a founder effect associated with domestication in each region. Andean landraces have been classified into three different racial groups, but all share the same chloroplast haplotype. This suggests that common bean was domesticated once only in South America and that the races diverged post-domestication. The haplotype found in Andean domesticated beans is confined to the southern part of the range of wild beans, so Andean beans were probably domesticated somewhere within this area. Mesoamerican landraces have been classified into four racial groups. Our limited samples of Races Jalisco and Guatemala differ from the more widespread and commercially important Races Mesoamerica and Durango in types and/or frequencies of haplotypes. All four Mesoamerican races share their haplotypes with local wild beans in parts of their ranges. Independent domestications of at least some of the races in Mesoamerica and/or conversion of some locally adapted wild beans to cultigens by hybridization with introduced domesticated beans, followed by introgression of the "domestication syndrome" seem the most plausible explanations of the chloroplast and other molecular data.

  14. Electron transfer and ionic displacements at the origin of the 2D electron gas at the LAO/STO interface: direct measurements with atomic-column spatial resolution.

    PubMed

    Cantoni, Claudia; Gazquez, Jaume; Miletto Granozio, Fabio; Oxley, Mark P; Varela, Maria; Lupini, Andrew R; Pennycook, Stephen J; Aruta, Carmela; di Uccio, Umberto Scotti; Perna, Paolo; Maccariello, Davide

    2012-08-01

    Using state-of-the-art, aberration-corrected scanning transmission electron microscopy and electron energy loss spectroscopy with atomic-scale spatial resolution, experimental evidence for an intrinsic electronic reconstruction at the LAO/STO interface is shown. Simultaneous measurements of interfacial electron density and system polarization are crucial for establishing the highly debated origin of the 2D electron gas.

  15. Tracing the Temporal and Spatial Variations in the Origin of Fecal Material in Three Oklahoma Watersheds Using Sterol Fingerprints

    NASA Astrophysics Data System (ADS)

    Lu, Y.; Philp, P. R.

    2014-12-01

    Organic wastes, in particular fecal material, are qualified as one of the major causes of water quality deterioration. Their accumulation in water bodies may increase algal proliferation and eutrophication and the number of pathogenic organisms, which are responsible for many intestinal diseases especially when the water is used for recreational activities and/or as a supply for drinking water. In order to estimate the risk level associated with primary body contact in recreational water bodies, enumeration of some specific micro-organisms, such as Enterococci and Escherichia coli, are commonly used. Sterol distributions can provide some relevant information on the origin of fecal material in water system, since they are ubiquitous organic compounds and their distributions in many warm-blooded animal feces can be used as evidence for their source. In this study, we monitored fecal material contamination in three Oklahoma watersheds based on sterol fingerprints over a one-year period (2012 ~ 2013). The sterols from sediments and water samples (sterols associated to suspended particles as well as free sterols in water) were recovered using sonication and solid phase extraction (SPE), respectively, using different organic solvents. They were then identified and quantified by gas chromatography - mass spectrometry (GC-MS) using an internal standard. The GC-MS was previously calibrated with a sterol mixture injected at different concentrations. Our primary results show that the concentration of total sterols generally increases from the Upper Canadian < Neosho Grand < Cimarron - Upper Arkansas Basins in Oklahoma. The fecal sterols commonly represent a small proportion (<15%) within the total sterols quantified in these three basins. Their distributions show a significant contribution from herbivore feces. By means of this monitoring, we are able to determine the presence of fecal contamination and provide a better understanding on the ability of using sterol

  16. Endogenous origin of endo-β-1,4-glucanase in common woodlouse Porcellio scaber (Crustacea, Isopoda).

    PubMed

    Kostanjšek, Rok; Milatovič, Maša; Strus, Jasna

    2010-11-01

    Because endogenous cellulases have been observed in arthropods, the potential ability to produce cellulose degrading enzymes was examined in the terrestrial isopod Porcellio scaber, an important decomposer of decayed plant material. cDNA fragments encoding portions of two novel endo-β-1,4-glucanase amino acid sequences were amplified by RT-PCR, and the amino acid sequences predicted were affiliated to endo-β-1,4-glucanases from other arthropods, where they cluster with endo-β-1,4-glucanases of decapod crustaceans. Hybridization in situ reveals the hepatopancreas to be the primary site of gene expression and provides direct evidence of the endogenous origin of endo-β-1,4-glucanase in P. scaber. Conservation of catalytically important amino acid residues suggests that both sequences translate into functional cellulases. Cellulolytic activity was detected in hepatopancreatic extract after separation by SDS-PAGE, which included CMC as substrate. This is the first evidence of endogenous cellulases in peracarid crustaceans and gives strong support for the involvement of isopod endo-β-1,4-glucanases in the degradation of cellulose in their diet.

  17. The Common-origin of Kinetic Turbulence and Electron-Halo of Velocity Distribution Function in the Solar Wind

    NASA Astrophysics Data System (ADS)

    Che, Haihong

    2015-04-01

    Observations of solar wind show that the power spectra of magnetic fluctuations break from Kolmogorov scaling law at ion inertial length. In addition, the electron velocity distribution function of solar wind exhibits an isotropic halo. What causes the spectral break and electron halo are two puzzles in heliophysics. I present a new model (Che et al., PRL 112, 2014 and ApJL, 795, 2014) that accounts for both puzzles--the kinetic turbulence and electron halo of solar wind originate from the nanoflare-accelerated keV electron beams in the inner corona. With PIC simulations, we found that the keV electron beams drive strong two-stream instabilities. The nonlinear evolution of the two-stream instability gives rise to an isotropic electron halo, kinetic Alfvenic wave and whistler wave turbulence through forward and inverse energy cascades.The most important predictions of this model include: 1) the energy injection plateau in the magnetic power spectra; 2) the enhanced parallel electrostatic fluctuation in the solar wind; 3) the core-halo relative drift, a relic of the saturated two-stream instability; 4) the temperature ratio of core-halo is determined by the two-stream instability heating property and the core-halo density ratio. The generation of Langmuir waves can produce type III micro-radio bursts that resemble the well-studied type III bursts observed in solar flares.

  18. Model-dependent spatial skill in pseudoproxy experiments testing climate field reconstruction methods for the Common Era

    NASA Astrophysics Data System (ADS)

    Smerdon, Jason E.; Coats, Sloan; Ault, Toby R.

    2016-03-01

    The spatial skill of four climate field reconstruction (CFR) methods is investigated using pseudoproxy experiments (PPEs) based on five last millennium and historical simulations from the Coupled and Paleo Model Intercomparison Projects Phases 5 and 3 (CMIP5/PMIP3) data archives. These simulations are used for the first time in a PPE context, the frameworks of which are constructed to test a recently assembled multiproxy network and multiple CFR techniques. The experiments confirm earlier findings demonstrating consistent methodological performance across the employed methods and spatially dependent reconstruction errors in all of the derived CFRs. Spectral biases in the reconstructed fields demonstrate that CFR methods can alone alter the ratio of spectral power at all locations in the field, independent of whether there are any spectral biases inherent in the underlying pseudoproxy series. The patterns of spectral biases are model dependent and indicate the potential for regions in the derived CFRs to be biased by changes in either low or high-frequency spectral power. CFR methods are also shown to alter the pattern of mean differences in the tropical Pacific during the Medieval Climate Anomaly and the Little Ice Age, with some model experiments indicating that CFR methodologies enhance the statistical likelihood of achieving larger mean differences between independent 300-year periods in the region. All of the characteristics of CFR performance are model dependent, indicating that CFR methods must be evaluated across multiple models and that conclusions from PPEs should be carefully connected to the spatial statistics of real-world climatic fields.

  19. The origin and implementation of the Broadening Experiences in Scientific Training programs: an NIH common fund initiative.

    PubMed

    Meyers, Frederick J; Mathur, Ambika; Fuhrmann, Cynthia N; O'Brien, Theresa C; Wefes, Inge; Labosky, Patricia A; Duncan, D'Anne S; August, Avery; Feig, Andrew; Gould, Kathleen L; Friedlander, Michael J; Schaffer, Chris B; Van Wart, Audra; Chalkley, Roger

    2016-02-01

    Recent national reports and commentaries on the current status and needs of the U.S. biomedical research workforce have highlighted the limited career development opportunities for predoctoral and postdoctoral trainees in academia, yet little attention is paid to preparation for career pathways outside of the traditional faculty path. Recognizing this issue, in 2013, the U.S. National Institutes of Health (NIH) Common Fund issued a request for application titled "NIH Director's Biomedical Research Workforce Innovation Award: Broadening Experiences in Scientific Training (BEST)." These 5-yr 1-time grants, awarded to 17 single or partnering institutions, were designed to develop sustainable approaches to broaden graduate and postgraduate training, aimed at creating training programs that reflect the range of career options that trainees may ultimately pursue. These institutions have formed a consortium in order to work together to develop, evaluate, share, and disseminate best practices and challenges. This is a first report on the early experiences of the consortium and the scope of participating BEST programs. In this report, we describe the state of the U.S. biomedical workforce and development of the BEST award, variations of programmatic approaches to assist with program design without BEST funding, and novel approaches to engage faculty in career development programs. To test the effectiveness of these BEST programs, external evaluators will assess their outcomes not only over the 5 yr grant period but also for an additional 10 yr beyond award completion.

  20. The orbital motion of the quintuplet cluster—a common origin for the arches and quintuplet clusters?

    SciTech Connect

    Stolte, A.; Hußmann, B.; Habibi, M.; Morris, M. R.; Ghez, A. M.; Brandner, W.; Lu, J. R.; Clarkson, W. I.; Matthews, K. E-mail: ghez@astro.ucla.edu E-mail: brandner@mpia.de E-mail: wiclarks@umich.edu

    2014-07-10

    We investigate the orbital motion of the Quintuplet cluster near the Galactic center with the aim of constraining formation scenarios of young, massive star clusters in nuclear environments. Three epochs of adaptive optics high-angular resolution imaging with the Keck/NIRC2 and Very Large Telescope/NAOS-CONICA systems were obtained over a time baseline of 5.8 yr, delivering an astrometric accuracy of 0.5-1 mas yr{sup –1}. Proper motions were derived in the cluster reference frame and were used to distinguish cluster members from the majority of the dense field star population toward the inner bulge. Fitting the cluster and field proper motion distributions with two-dimensional (2D) Gaussian models, we derive the orbital motion of the cluster for the first time. The Quintuplet is moving with a 2D velocity of 132 ± 15 km s{sup –1} with respect to the field along the Galactic plane, which yields a three-dimensional orbital velocity of 167 ± 15 km s{sup –1} when combined with the previously known radial velocity. From a sample of 119 stars measured in three epochs, we derive an upper limit to the velocity dispersion of σ{sub 1D} < 10 km s{sup –1} in the core of the Quintuplet cluster. Knowledge of the three velocity components of the Quintuplet allows us to model the cluster orbit in the potential of the inner Galaxy. Under the assumption that the Quintuplet is located in the central 200 pc at the present time, these simulations exclude the possibility that the cluster is moving on a circular orbit. Comparing the Quintuplet's orbit with our earlier measurements of the Arches' orbit, we discuss the possibility that both clusters originated in the same area of the central molecular zone (CMZ). According to the model of Binney et al., two families of stable cloud orbits are located along the major and minor axes of the Galactic bar, named x1 and x2 orbits, respectively. The formation locus of these clusters is consistent with the outermost x2 orbit and might

  1. MgrB inactivation is a common mechanism of colistin resistance in KPC-producing Klebsiella pneumoniae of clinical origin.

    PubMed

    Cannatelli, Antonio; Giani, Tommaso; D'Andrea, Marco Maria; Di Pilato, Vincenzo; Arena, Fabio; Conte, Viola; Tryfinopoulou, Kyriaki; Vatopoulos, Alkiviadis; Rossolini, Gian Maria

    2014-10-01

    Klebsiella pneumoniae strains producing KPC-type carbapenemases (KPC-KP) are challenging multidrug-resistant pathogens due to their extensively drug-resistant phenotypes and potential for epidemic dissemination in health care settings. Colistin is a key component of the combination antimicrobial regimens used for treatment of severe KPC-KP infections. We previously reported that insertional inactivation of the mgrB gene, encoding a negative-feedback regulator of the PhoQ-PhoP signaling system, can be responsible for colistin resistance in KPC-KP, due to the resulting upregulation of the Pmr lipopolysaccharide modification system. In this work we investigated the status of the mgrB gene in a collection of 66 colistin-resistant nonreplicate clinical strains of KPC-KP isolated from different hospitals in Italy and Greece. Overall, 35 strains (53%) exhibited alterations of the mgrB gene, including insertions of different types of mobile elements (IS5-like, IS1F-like, or ISKpn14), nonsilent point mutations, and small intragenic deletions. Four additional strains had a larger deletion of the mgrB locus, while the remaining 27 strains (41%) did not show mgrB alterations. Transcriptional upregulation of the phoQ and pmrK genes (part of the phoPQ and pmrHFIJKLM operon, respectively) was observed in all strains with mgrB alterations. Complementation experiments with a wild-type mgrB gene restored colistin susceptibility and basal expression levels of phoQ and pmrK genes in strains carrying different types of mgrB alterations. The present results suggest that mgrB alteration can be a common mechanism of colistin resistance among KPC-KP in the clinical setting.

  2. The Orbital Motion of the Quintuplet Cluster—A Common Origin for the Arches and Quintuplet Clusters?

    NASA Astrophysics Data System (ADS)

    Stolte, A.; Hußmann, B.; Morris, M. R.; Ghez, A. M.; Brandner, W.; Lu, J. R.; Clarkson, W. I.; Habibi, M.; Matthews, K.

    2014-07-01

    We investigate the orbital motion of the Quintuplet cluster near the Galactic center with the aim of constraining formation scenarios of young, massive star clusters in nuclear environments. Three epochs of adaptive optics high-angular resolution imaging with the Keck/NIRC2 and Very Large Telescope/NAOS-CONICA systems were obtained over a time baseline of 5.8 yr, delivering an astrometric accuracy of 0.5-1 mas yr-1. Proper motions were derived in the cluster reference frame and were used to distinguish cluster members from the majority of the dense field star population toward the inner bulge. Fitting the cluster and field proper motion distributions with two-dimensional (2D) Gaussian models, we derive the orbital motion of the cluster for the first time. The Quintuplet is moving with a 2D velocity of 132 ± 15 km s-1 with respect to the field along the Galactic plane, which yields a three-dimensional orbital velocity of 167 ± 15 km s-1 when combined with the previously known radial velocity. From a sample of 119 stars measured in three epochs, we derive an upper limit to the velocity dispersion of σ1D < 10 km s-1 in the core of the Quintuplet cluster. Knowledge of the three velocity components of the Quintuplet allows us to model the cluster orbit in the potential of the inner Galaxy. Under the assumption that the Quintuplet is located in the central 200 pc at the present time, these simulations exclude the possibility that the cluster is moving on a circular orbit. Comparing the Quintuplet's orbit with our earlier measurements of the Arches' orbit, we discuss the possibility that both clusters originated in the same area of the central molecular zone (CMZ). According to the model of Binney et al., two families of stable cloud orbits are located along the major and minor axes of the Galactic bar, named x1 and x2 orbits, respectively. The formation locus of these clusters is consistent with the outermost x2 orbit and might hint at cloud collisions at the

  3. Spatial and temporal genetic structure of Symbiodinium populations within a common reef-building coral on the Great Barrier Reef.

    PubMed

    Howells, Emily J; Willis, Bette L; Bay, Line K; van Oppen, Madeleine J H

    2013-07-01

    The dinoflagellate photosymbiont Symbiodinium plays a fundamental role in defining the physiological tolerances of coral holobionts, but little is known about the dynamics of these endosymbiotic populations on coral reefs. Sparse data indicate that Symbiodinium populations show limited spatial connectivity; however, no studies have investigated temporal dynamics for in hospite Symbiodinium populations following significant mortality and recruitment events in coral populations. We investigated the combined influences of spatial isolation and disturbance on the population dynamics of the generalist Symbiodinium type C2 (ITS1 rDNA) hosted by the scleractinian coral Acropora millepora in the central Great Barrier Reef. Using eight microsatellite markers, we genotyped Symbiodinium in a total of 401 coral colonies, which were sampled from seven sites across a 12-year period including during flood plume-induced coral bleaching. Genetic differentiation of Symbiodinium was greatest within sites, explaining 70-86% of the total genetic variation. An additional 9-27% of variation was explained by significant differentiation of populations among sites separated by 0.4-13 km, which is consistent with low levels of dispersal via water movement and historical disturbance regimes. Sampling year accounted for 6-7% of total genetic variation and was related to significant coral mortality following severe bleaching in 1998 and a cyclone in 2006. Only 3% of the total genetic variation was related to coral bleaching status, reflecting generally small (8%) reductions in allelic diversity within bleached corals. This reduction probably reflected a loss of genotypes in hospite during bleaching, although no site-wide changes in genetic diversity were observed. Combined, our results indicate the importance of disturbance regimes acting together with limited oceanographic transport to determine the genetic composition of Symbiodinium types within reefs.

  4. Origin of a common trunk for the inferior phrenic arteries from the right renal artery: a new anatomic vascular variant with clinical implications.

    PubMed

    Topaz, On; Topaz, Allyne; Polkampally, Pritam R; Damiano, Thomas; King, Christopher A

    2010-01-01

    The inferior phrenic arteries constitute a pair of important vessels, supplying multiple organs including the diaphragm, adrenal glands, esophagus, stomach, liver, inferior vena cava, and retroperitoneum. The vast majority (80-90%) of inferior phrenic arteries originate as separate vessels with near equal frequency from either the abdominal aorta or the celiac trunk. Infrequently, the right and left inferior phrenic arteries can arise in the form of a common trunk from the aorta or from the celiac trunk. We herein present three patients with a new anatomic vascular variant: a common trunk of the inferior phrenic arteries arising from the right renal artery. In one case, the left inferior phrenic branch of the common trunk provided collaterals connecting with a supra-diaphragmatic branch of the left internal mammary artery and in another with the lateral wall of the pericardium. Angiographic identification of a common trunk for the inferior phrenic arteries arising from the right renal artery is important for proper diagnosis and clinical management. The presence of this unique vascular variant can impact revascularization of the renal arteries.

  5. Three forms of spatial temporal feedforward inhibition are common to different ganglion cell types in rabbit retina.

    PubMed

    Chen, Xin; Hsueh, Hain-Ann; Greenberg, Kenneth; Werblin, Frank S

    2010-05-01

    There exist more than 30 different morphological amacrine cell types, but there may be fewer physiological types. Here we studied the amacrine cell outputs by measuring the temporal and spatial properties of feedforward inhibition to four different types of ganglion cells. These ganglion cells, each with concentric receptive field organization, appear to receive a different relative contribution of the same three forms of feed-forward inhibition, namely: local glycinergic, local sustained GABAergic, and broad transient GABAergic inhibition. Two of these inhibitory components, local glycinergic inhibition and local sustained GABAergic inhibition were localized to narrow regions confined to the dendritic fields of the ganglion cells. The third, a broad transient GABAergic inhibition, was driven from regions peripheral to the dendritic area. Each inhibitory component is also correlated with characteristic kinetics expressed in all ganglion cells: broad transient GABAergic inhibition had the shortest latency, local glycinergic inhibition had an intermediate latency, and local sustained GABAergic inhibition had the longest latency. We suggest each of these three inhibitory components represents the output from a distinct class of amacrine cell, mediates a specific visual function, and each forms a basic functional component for the four ganglion cell types. Similar subunits likely exist in the circuits of other ganglion cell types as well.

  6. Discriminative Common Spatial Pattern Sub-bands Weighting Based on Distinction Sensitive Learning Vector Quantization Method in Motor Imagery Based Brain-computer Interface

    PubMed Central

    Jamaloo, Fatemeh; Mikaeili, Mohammad

    2015-01-01

    Common spatial pattern (CSP) is a method commonly used to enhance the effects of event-related desynchronization and event-related synchronization present in multichannel electroencephalogram-based brain-computer interface (BCI) systems. In the present study, a novel CSP sub-band feature selection has been proposed based on the discriminative information of the features. Besides, a distinction sensitive learning vector quantization based weighting of the selected features has been considered. Finally, after the classification of the weighted features using a support vector machine classifier, the performance of the suggested method has been compared with the existing methods based on frequency band selection, on the same BCI competitions datasets. The results show that the proposed method yields superior results on “ay” subject dataset compared against existing approaches such as sub-band CSP, filter bank CSP (FBCSP), discriminative FBCSP, and sliding window discriminative CSP. PMID:26284171

  7. Mesoamerican origin and pre- and post-columbian expansions of the ranges of Acanthoscelides obtectus say, a cosmopolitan insect pest of the common bean.

    PubMed

    Oliveira, Márcia Rodrigues Carvalho; Corrêa, Alberto Soares; de Souza, Giselle Anselmo; Guedes, Raul Narciso Carvalho; de Oliveira, Luiz Orlando

    2013-01-01

    An unprecedented global transfer of agricultural resources followed the discovery of the New World; one consequence of this process was that staple food plants of Neotropical origin, such as the common bean (Phaseolus vulgaris), soon expanded their ranges overseas. Yet many pests and diseases were also transported. Acanthoscelides obtectus is a cosmopolitan seed predator associated with P. vulgaris. Codispersal within the host seed seems to be an important determinant of the ability of A. obtectus to expand its range over long distances. We examined the phylogeographic structure of A. obtectus by (a) sampling three mitochondrial gene sequences (12s rRNA, 16s rRNA, and the gene that encodes cytochrome c oxidase subunit I (COI)) throughout most of the species' range and (b) exploring its late evolutionary history. Our findings indicate a Mesoamerican origin for the current genealogical lineages of A. obtectus. Each of the two major centers of genetic diversity of P. vulgaris (the Andes and Mesoamerica) contains a highly differentiated lineage of the bean beetle. Brazil has two additional, closely related lineages, both of which predate the Andean lineage and have the Mesoamerican lineage as their ancestor. The cosmopolitan distribution of A. obtectus has resulted from recent expansions of the two Brazilian lineages. We present additional evidence for both pre-Columbian and post-Columbian range expansions as likely events that shaped the current distribution of A. obtectus worldwide.

  8. A Common Polymorphism within the IGF2 Imprinting Control Region Is Associated with Parent of Origin Specific Effects in Infantile Hemangiomas

    PubMed Central

    Schultz, Brent; Yao, Xiaopan; Deng, Yanhong; Waner, Milton; Spock, Christopher; Tom, Laura; Persing, John; Narayan, Deepak

    2015-01-01

    Infantile hemangioma (IH) is the most common tumor of the pediatric age group, affecting up to 4% of newborns ranging from inconsequential blemishes, to highly aggressive tumors. Following well defined growth phases (proliferative, plateau involutional) IH usually regress into a fibro-fatty residuum. Despite the high prevalence of IH, little is known regarding the pathogenesis of disease. A reported six fold decrease in IGF2 expression (correlating with transformation of proliferative to involuted lesions) prompted us to study the IGF-2 axis further. We demonstrate that IGF2 expression in IH is strongly related to the expression of a cancer testes and suspected oncogene BORIS (paralog of CTCF), placing IH in the unique category of being the first known benign BORIS positive tumor. IGF2 expression was strongly and positively related to BORIS transcript expression. Furthermore, a stronger association was made when comparing BORIS levels against the expression of CTCF via either a percentage or difference between the two. A common C/T polymorphism at CTCF BS6 appeared to modify the correlation between CTCF/BORIS and IGF2 expression in a parent of origin specific manner. Moreover, these effects may have phenotypic consequences as tumor growth also correlates with the genotype at CTCF BS6. This may provide a framework for explaining the clinical variability seen in IH and suggests new insights regarding CTCF and BORIS related functionality in both normal and malignant states. PMID:26496499

  9. Frequency gradients of DHCR7 mutations in patients with Smith-Lemli-Opitz syndrome in Europe: evidence for different origins of common mutations.

    PubMed

    Witsch-Baumgartner, M; Ciara, E; Löffler, J; Menzel, H J; Seedorf, U; Burn, J; Gillessen-Kaesbach, G; Hoffmann, G F; Fitzky, B U; Mundy, H; Clayton, P; Kelley, R I; Krajewska-Walasek, M; Utermann, G

    2001-01-01

    Smith-Lemli-Opitz syndrome/RSH (SLOS) is a multiple congenital anomaly syndrome caused by mutations in the gene for Delta7-sterol reductase (DHCR7) which catalyses the last step in the biosynthesis of cholesterol. SLOS is among the common recessive disorders in Europeans but almost absent in most other populations. More than 40 mutations in the DHCR7 gene some of which are frequent have been described in SLOS patients of various origins. Here we report mutation analysis of the DHCR7 gene in SLOS patients from Poland (n = 15), Germany/Austria (n = 22) and Great Britain (n = 22). Altogether 35 different mutations were identified and the two null mutations IVS8-1G > C and W151X were the most frequent in the total sample. In all three populations three mutations accounted for >0.5 of SLOS chromosomes. The mutational spectra were, however, significantly different across these populations with each of the common mutations showing an east-west gradient (W151X, V326L) or vice versa (IVS8-1G > C). W151X is the most frequent (0.33) mutation in Polish SLOS patients. It has an intermediate frequency in German/Austrian patients (0.18) and is rare among British patients (0.02). V326L shows the same distribution pattern (Poland 0.23, Germany/Austria 0.18, Britain 0.02). In contrast IVS8-1G > C is most frequent in Britain (0.34) intermediate in Germany/Austria (0.20) and rare in Poland (0.03). All analysed IVS8-1G > C and V326L alleles shared the same DHCR7 haplotype, whereas the W151X mutation occurred on different haplotypes. There is evidence for both recurrent mutations and founder effects. Together this suggests that the common SLOS mutations in Europe have different geographic and historic origins and spread across the continent in opposite directions. PMID:11175299

  10. Performance of common spatial pattern under a smaller set of EEG electrodes in brain-computer interface on chronic stroke patients: a multi-session dataset study.

    PubMed

    Tam, Wing-Kin; Ke, Zheng; Tong, Kai-Yu

    2011-01-01

    Brain-computer interface (BCI) uses non-muscular channel of the nervous system for communication. Common Spatial Pattern (CSP) is a popular spatial filtering method used to reduce the effect of volume conduction on EEG signals. It is thought that CSP requires a large number of electrodes to be effective. Using a 20-session dataset of motor imagery BCI usage by 5 stroke patients, we demonstrated that after channel selection, CSP can still maintain a high accuracy with low number of electrodes using a newly proposed channel selection method called CSP-rank (higher than 90% with 8 electrodes). The results showed that using only the first session for channel selection, a high accuracy can be maintained in subsequent sessions. CSP-rank has been compared to the popular support vector machine recursive feature elimination (SVM-RFE). The results showed that the CSP-rank required less electrodes to maintain accuracy higher than 90% (a minimum of 8 compared to 12 of SVM-RFE) and it attained a higher maximum accuracy (91.7% compared with 90.7% of SVM-RFE). This could support clinicians to apply more BCI in routine rehabilitation. PMID:22255789

  11. Spatially resolved chemical imaging of individual atmospheric particles using nanoscale imaging mass spectrometry: insight into particle origin and chemistry

    DOE PAGES

    Ghosal, Sutapa; Weber, Peter K.; Laskin, Alexander

    2014-01-14

    Knowledge of the spatially resolved composition of atmospheric particles is essential for differentiating between their surface versus bulk chemistry and understanding particle reactivity and the potential environmental impact. Here, we demonstrate the application of nanometer-scale secondary ion mass spectrometry (CAMECA NanoSIMS 50 ion probe) for 3D chemical imaging of individual atmospheric particles without any sample pre-treatment, such as sectioning of particles. Use of NanoSIMS depth profile analysis enables elemental mapping of particles with nanometer spatial resolution over a broad range of particle sizes. We have used this technique to probe the spatially resolved composition of ambient particles collected during amore » field campaign in Mexico City. Particles collected during this campaign have been extensively characterized in the past using other particle analysis techniques and hence offer a unique opportunity for exploring the utility of depth-resolved chemical imaging in ambient particle research. The particles that we examined in our study include those collected during a pollution episode related to urban waste incineration as well as background particles from the same location before the episode. Particles from the pollution episode show substantial intra-particle compositional variability typical of particles resulting from multiple emission sources. In contrast, the background particles have relatively homogeneous compositions with enhanced presence of nitrogen, oxygen, and chlorine at the particle surface. We also observed the surface enhancement of nitrogen and oxygen species is consistent with the presence of surface nitrates resulting from gas–particle heterogeneous interactions and is indicative of atmospheric ageing of the particles. The results presented here illustrate 3D characterization of ambient particles for insight into their chemical history.« less

  12. Spatially resolved chemical imaging of individual atmospheric particles using nanoscale imaging mass spectrometry: insight into particle origin and chemistry

    SciTech Connect

    Ghosal, Sutapa; Weber, Peter K.; Laskin, Alexander

    2014-01-14

    Knowledge of the spatially resolved composition of atmospheric particles is essential for differentiating between their surface versus bulk chemistry and understanding particle reactivity and the potential environmental impact. Here, we demonstrate the application of nanometer-scale secondary ion mass spectrometry (CAMECA NanoSIMS 50 ion probe) for 3D chemical imaging of individual atmospheric particles without any sample pre-treatment, such as sectioning of particles. Use of NanoSIMS depth profile analysis enables elemental mapping of particles with nanometer spatial resolution over a broad range of particle sizes. We have used this technique to probe the spatially resolved composition of ambient particles collected during a field campaign in Mexico City. Particles collected during this campaign have been extensively characterized in the past using other particle analysis techniques and hence offer a unique opportunity for exploring the utility of depth-resolved chemical imaging in ambient particle research. The particles that we examined in our study include those collected during a pollution episode related to urban waste incineration as well as background particles from the same location before the episode. Particles from the pollution episode show substantial intra-particle compositional variability typical of particles resulting from multiple emission sources. In contrast, the background particles have relatively homogeneous compositions with enhanced presence of nitrogen, oxygen, and chlorine at the particle surface. We also observed the surface enhancement of nitrogen and oxygen species is consistent with the presence of surface nitrates resulting from gas–particle heterogeneous interactions and is indicative of atmospheric ageing of the particles. The results presented here illustrate 3D characterization of ambient particles for insight into their chemical history.

  13. Spatially resolved chemical imaging of individual atmospheric particles using nanoscale imaging mass spectrometry: Insighs into particle origin and chemistry

    SciTech Connect

    Ghosal, Sutapa; Weber, Peter K.; Laskin, Alexander

    2014-04-21

    Knowledge of the spatially-resolved composition of atmospheric particles is essential for differentiating between their surface versus bulk chemistry, understanding particle reactivity and the potential environmental impact. We demonstrate the application of nanometer-scale secondary ion mass spectrometry (Cameca NanoSIMS 50 ion probe) for 3D chemical imaging of individual atmospheric particles without any sample pre-treatment, such as the sectioning of particles. Use of NanoSIMS depth profile analysis enables elemental mapping of particles with nanometer spatial resolution over a broad of range of particle sizes. We have used this technique to probe spatially resolved composition of ambient particles collected during a field campaign in Mexico City. Particles collected during this campaign have been extensively characterized in the past using other particle analysis techniques and hence offer a unique opportunity for exploring the utility of depth resolved chemical imaging in ambient particle research. 1 Particles examined in this study include those collected during a pollution episode related to urban waste incineration as well as background particles from the same location prior to the episode. Particles from the pollution episode show substantial intra-particle compositional variability typical of particles resulting from multiple emission sources. In contrast, the background particles have relatively homogeneous compositions with enhanced presence of nitrogen, oxygen and chlorine at the particle surface. The observed surface enhancement of nitrogen and oxygen species is consistent with the presence of surface nitrates resulting from gas-particle heterogeneous interactions and is indicative of atmospheric ageing of the particles. The results presented here illustrate 3D characterization of ambient particles for insights into their chemical history.

  14. Spatially resolved chemical imaging of individual atmospheric particles using nanoscale imaging mass spectrometry: Insights into particle origin and chemistry

    NASA Astrophysics Data System (ADS)

    Ghosal, S.; Weber, P. K.; Laskin, A.

    2014-12-01

    Knowledge of the spatially-resolved composition of atmospheric particles is essential for differentiating between their surface versus bulk chemistry, understanding particle reactivity and the potential environmental impact. We demonstrate the application of nanometer-scale secondary ion mass spectrometry (Cameca NanoSIMS 50 ion probe) for 3D chemical imaging of individual atmospheric particles without any sample pre-treatment, such as the sectioning of particles. Use of NanoSIMS depth profile analysis enables elemental mapping of particles with nanometer spatial resolution over a broad of range of particle sizes. We have used this technique to probe spatially resolved composition of ambient particles collected during a field campaign in Mexico City. Particles collected during this campaign have been extensively characterized in the past using other particle analysis techniques and hence offer a unique opportunity for exploring the utility of depth resolved chemical imaging in ambient particle research. Particles examined in this study include those collected during a pollution episode related to urban waste incineration as well as background particles from the same location prior to the episode. Particles from the pollution episode show substantial intra-particle compositional variability typical of particles resulting from multiple emission sources. In contrast, the background particles have relatively homogeneous compositions with enhanced presence of nitrogen, oxygen and chlorine at the particle surface. The observed surface enhancement of nitrogen and oxygen species is consistent with the presence of surface nitrates resulting from gas-particle heterogeneous interactions and is indicative of atmospheric ageing of the particles. The results presented here illustrate 3D characterization of ambient particles for insights into their chemical history.

  15. Charge-tunnelling and self-trapping: common origins for blinking, grey-state emission and photoluminescence enhancement in semiconductor quantum dots

    NASA Astrophysics Data System (ADS)

    Osborne, M. A.; Fisher, A. A. E.

    2016-04-01

    Understanding instabilities in the photoluminescence (PL) from light emitting materials is crucial to optimizing their performance for different applications. Semiconductor quantum dots (QDs) offer bright, size tunable emission, properties that are now being exploited in a broad range of developing technologies from displays and solar cells to biomaging and optical storage. However, instabilities such as photoluminescence intermittency, enhancement and bleaching of emission in these materials can be detrimental to their utility. Here, we report dielectric dependent blinking, intensity-``spikes'' and low-level, ``grey''-state emission, as well as PL enhancement in ZnS capped CdSe QDs; observations that we found consistent with a charge-tunnelling and self-trapping (CTST) description of exciton-dynamics on the QD-host system. In particular, modulation of PL in grey-states and PL enhancement are found to have a common origin in the equilibrium between exciton charge carrier core and surface-states within the CTST framework. Parameterized in terms of size and electrostatic properties of the QD and its nanoenvironment, the CTST offers predictive insight into exciton-dynamics in these nanomaterials.Understanding instabilities in the photoluminescence (PL) from light emitting materials is crucial to optimizing their performance for different applications. Semiconductor quantum dots (QDs) offer bright, size tunable emission, properties that are now being exploited in a broad range of developing technologies from displays and solar cells to biomaging and optical storage. However, instabilities such as photoluminescence intermittency, enhancement and bleaching of emission in these materials can be detrimental to their utility. Here, we report dielectric dependent blinking, intensity-``spikes'' and low-level, ``grey''-state emission, as well as PL enhancement in ZnS capped CdSe QDs; observations that we found consistent with a charge-tunnelling and self-trapping (CTST

  16. The G6055A (G2019S) mutation in LRRK2 is frequent in both early and late onset Parkinson's disease and originates from a common ancestor

    PubMed Central

    Goldwurm, S; Fonzo, A; Simons, E; Rohe, C; Zini, M; Canesi, M; Tesei, S; Zecchinelli, A; Antonini, A; Mariani, C; Meucci, N; Sacilotto, G; Sironi, F; Salani, G; Ferreira, J; Chien, H; Fabrizio, E; Vanacore, N; Libera, A; Stocchi, F; Diroma, C; Lamberti, P; Sampaio, C; Meco, G; Barbosa, E; Bertoli-Avella, A; Breedveld, G; Oostra, B; Pezzoli, G; Bonifati, V

    2005-01-01

    Background: Mutations in the gene Leucine-Rich Repeat Kinase 2 (LRRK2) were recently identified as the cause of PARK8 linked autosomal dominant Parkinson's disease. Objective: To study recurrent LRRK2 mutations in a large sample of patients from Italy, including early (<50 years) and late onset familial and sporadic Parkinson's disease. Results: Among 629 probands, 13 (2.1%) were heterozygous carriers of the G2019S mutation. The mutation frequency was higher among familial (5.1%, 9/177) than among sporadic probands (0.9%, 4/452) (p<0.002), and highest among probands with one affected parent (8.7%, 6/69) (p<0.001). There was no difference in the frequency of the G2019S mutation in probands with early v late onset disease. Among 600 probands, one heterozygous R1441C but no R1441G or Y1699C mutations were detected. None of the four mutations was found in Italian controls. Haplotype analysis in families from five countries suggested that the G2019S mutation originated from a single ancient founder. The G2019S mutation was associated with the classical Parkinson's disease phenotype and a broad range of onset age (34 to 73 years). Conclusions: G2019S is the most common genetic determinant of Parkinson's disease identified so far. It is especially frequent among cases with familial Parkinson's disease of both early and late onset, but less common among sporadic cases. These findings have important implications for diagnosis and genetic counselling in Parkinson's disease. PMID:16272257

  17. Two distinct origins of a common BRCA1 mutation in breast-ovarian cancer families: a genetic study of 15 185delAG-mutation kindreds.

    PubMed Central

    Berman, D. B.; Wagner-Costalas, J.; Schultz, D. C.; Lynch, H. T.; Daly, M.; Godwin, A. K.

    1996-01-01

    We screened 163 women from breast-ovarian cancer-prone families, as well as 178 individuals affected with breast and/or ovarian cancer but unselected for family history, for germ-line mutations in exon 2 of BRCA1, by SSCP analysis and direct sequencing. A total of 25 mutations were detected. Thirteen of 64 Jewish Ashkenazi women and 2 non-Jewish individuals were found to possess the 185delAG mutation. Haplotype data for all 15 individuals, with markers intragenic to BRCA1, suggest that the Jewish Ashkenazi individuals share a common ancestry that is distinct from the lineage shared by the other two women. These data provide the first evidence of two distinct lines of transmission for the 185delAG mutation, only one of which has its origins in the Jewish Ashkenazi population. Our screening also uncovered 10 affected individuals with an 11-bp deletion at nucleotide 188 of BRCA1 (188del11), 4 of whom are Ashkenazi Jews. This is only the third reported mutation detected within the Jewish Ashkenazi population and may represent the second most common alteration in BRCA1 found in Ashkenazi Jews in the United States. The observed overrepresentation of specific mutations within a subgroup of the general population may eventually contribute to the development of inexpensive and routine tests for BRCA1 mutations, as well as to the elucidation of other contributory factors (e.g., diet, environment, and chemical exposures) that may play a key role in cancer initiation and development. The implications of the mutational data, as well as the role that founder effect, demographic history, and penetrance play in the resulting observed phenomena, are discussed. Images Figure 1 Figure 2 Figure 3 PMID:8651293

  18. Two distinct origins of a common BRCA1 mutation in breast-ovarian cancer families: A genetic study of 15 185delAG-mutation kindreds

    SciTech Connect

    Berman, D.B.; Schultz, D.C.; Godwin, A.K.

    1996-06-01

    We screened 163 women from breast-ovarian cancer-prone families, as well as 178 individuals affected with breast and/or ovarian cancer but unselected for family history, for germ-line mutations in exon 2 of BRCA1, by SSCP analysis and direct sequencing. A total of 25 mutations were detected. Thirteen of 64 Jewish Ashkenazi women and 2 non-Jewish individuals were found to possess the 185delAG mutation. Haplotype data for all 15 individuals, with markers intragenic to BRCA1, suggest that the Jewish Ashkenazi individuals share a common ancestry that is distinct from the lineage shared by the other two women. These data provide the first evidence of two distinct lines of transmission for the 185delAG mutation, only one of which has its origins in the Jewish Ashkenazi population. Our screening also uncovered 10 affected individuals with an 11-bp deletion at nucleotide 188 of BRCA1 (188del11), 4 of whom are Ashkenazi Jews. This is only the third reported mutation detected within the Jewish Ashkenazi population and may represent the second most common alteration in BRCA1 found in Ashkenazi Jews in the United States. The observed overrepresentation of specific mutations within a subgroup of the general population may eventually contribute to the development of inexpensive and routine tests for BRCA1 mutations, as well as to the elucidation of other contributory factors (e.g., diet, environment, and chemical exposures) that may play a key role in cancer initiation and development. The implications of the mutational data, as well as the role that founder effect, demographic history, and penetrance play in the resulting observed phenomena, are discussed. 32 refs., 3 figs., 2 tabs.

  19. Phylogenetic analysis of spring virema of carp virus reveals distinct subgroups with common origins for recent isolates in North America and the UK.

    PubMed

    Miller, O; Fuller, F J; Gebreyes, W A; Lewbart, G A; Shchelkunov, I S; Shivappa, R B; Joiner, C; Woolford, G; Stone, D M; Dixon, P F; Raley, M E; Levine, J F

    2007-07-16

    Genetic relationships between 35 spring viremia of carp virus (SVCV) genogroup Ia isolates were determined based on the nucleotide sequences of the phosphoprotein (P) gene and glycoprotein (G) genes. Phylogenetic analysis based on P gene sequences revealed 2 distinct subgroups within SVCV genogroup Ia, designated SVCV Iai and Iaii, and suggests at least 2 independent introductions of the virus into the USA in 2002. Combined P- and G-sequence data support the emergence of SVCV in Illinois, USA, and in Lake Ontario, Canada, from the initial outbreak in Wisconsin, USA, and demonstrate a close genetic link to viruses isolated during routine import checks on fish brought into the UK from Asia. The data also showed a genetic link between SVCV isolations made in Missouri and Washington, USA, in 2004 and the earlier isolation made in North Carolina, USA, in 2002. However, based on the close relationship to a 2004 UK isolate, the data suggest than the Washington isolate represents a third introduction into the US from a common source, rather than a reemergence from the 2002 isolate. There was strong phylogenetic support for an Asian origin for 9 of 16 UK viruses isolated either from imported fish, or shown to have been in direct contact with fish imported from Asia. In one case, there was 100% nucleotide identity in the G-gene with a virus isolated in China.

  20. Evolution of an ancient venom: recognition of a novel family of cnidarian toxins and the common evolutionary origin of sodium and potassium neurotoxins in sea anemone.

    PubMed

    Jouiaei, Mahdokht; Sunagar, Kartik; Federman Gross, Aya; Scheib, Holger; Alewood, Paul F; Moran, Yehu; Fry, Bryan G

    2015-06-01

    Despite Cnidaria (sea anemones, corals, jellyfish, and hydroids) being the oldest venomous animal lineage, structure-function relationships, phyletic distributions, and the molecular evolutionary regimes of toxins encoded by these intriguing animals are poorly understood. Hence, we have comprehensively elucidated the phylogenetic and molecular evolutionary histories of pharmacologically characterized cnidarian toxin families, including peptide neurotoxins (voltage-gated Na(+) and K(+) channel-targeting toxins: NaTxs and KTxs, respectively), pore-forming toxins (actinoporins, aerolysin-related toxins, and jellyfish toxins), and the newly discovered small cysteine-rich peptides (SCRiPs). We show that despite long evolutionary histories, most cnidarian toxins remain conserved under the strong influence of negative selection-a finding that is in striking contrast to the rapid evolution of toxin families in evolutionarily younger lineages, such as cone snails and advanced snakes. In contrast to the previous suggestions that implicated SCRiPs in the biomineralization process in corals, we demonstrate that they are potent neurotoxins that are likely involved in the envenoming function, and thus represent the first family of neurotoxins from corals. We also demonstrate the common evolutionary origin of type III KTxs and NaTxs in sea anemones. We show that type III KTxs have evolved from NaTxs under the regime of positive selection, and likely represent a unique evolutionary innovation of the Actinioidea lineage. We report a correlation between the accumulation of episodically adaptive sites and the emergence of novel pharmacological activities in this rapidly evolving neurotoxic clade.

  1. Charge-tunnelling and self-trapping: common origins for blinking, grey-state emission and photoluminescence enhancement in semiconductor quantum dots.

    PubMed

    Osborne, M A; Fisher, A A E

    2016-04-28

    Understanding instabilities in the photoluminescence (PL) from light emitting materials is crucial to optimizing their performance for different applications. Semiconductor quantum dots (QDs) offer bright, size tunable emission, properties that are now being exploited in a broad range of developing technologies from displays and solar cells to biomaging and optical storage. However, instabilities such as photoluminescence intermittency, enhancement and bleaching of emission in these materials can be detrimental to their utility. Here, we report dielectric dependent blinking, intensity-"spikes" and low-level, "grey"-state emission, as well as PL enhancement in ZnS capped CdSe QDs; observations that we found consistent with a charge-tunnelling and self-trapping (CTST) description of exciton-dynamics on the QD-host system. In particular, modulation of PL in grey-states and PL enhancement are found to have a common origin in the equilibrium between exciton charge carrier core and surface-states within the CTST framework. Parameterized in terms of size and electrostatic properties of the QD and its nanoenvironment, the CTST offers predictive insight into exciton-dynamics in these nanomaterials. PMID:27088542

  2. Hopkins-Skellam index and origin of spatial regularity in InAs quantum dot formation on GaAs(001)

    SciTech Connect

    Konishi, Tomoya Tsukamoto, Shiro; Bell, Gavin R.

    2015-04-14

    We investigate the origin of the spatial regularity of arrays of InAs quantum dots (QDs) grown on GaAs(001). The Hopkins-Skellam index (HSI) is used with a newly developed calculation algorithm to quantify the spatial regularity both of QDs and of nm-sized surface reconstruction territories (SRTs) present in the In{sub x}Ga{sub 1−x}As wetting layer prior to QD nucleation. The SRT is the minimum extent of a surface reconstruction region needed for one QD to nucleate. By computing the evolving HSI of SRTs from sequences of in situ scanning tunnelling microscopy images during growth, we find that the spatial regularity of QDs is traced back to that of the (n × 3) SRTs as early as 0.6 monolayers of InAs coverage. This regularity is disturbed by the (n × 4) SRTs which appear at higher coverage. The SRT approach is discussed in comparison to conventional capture zone theories of surface growth.

  3. Spatial Variation in the Origin of Dissolved Organic Carbon in Snow on the Juneau Icefield, Southeast Alaska.

    PubMed

    Fellman, Jason B; Hood, Eran; Raymond, Peter A; Stubbins, Aron; Spencer, Robert G M

    2015-10-01

    Dissolved organic carbon (DOC) plays a fundamental role in the biogeochemistry of glacier ecosystems. However, the specific sources of glacier DOC remain unresolved. To assess the origin and nature of glacier DOC, we collected snow from 10 locations along a transect across the Juneau Icefield, Alaska extending from the coast toward the interior. The Δ(14)C-DOC of snow varied from -743 to -420‰ showing progressive depletion across the Icefield as δ(18)O of water became more depleted (R(2) = 0.56). Older DOC corresponded to lower DOC concentrations in snow (R(2) = 0.31) and a decrease in percent humic-like fluorescence (R(2) = 0.36), indicating an overall decrease in modern DOC across the Icefield. Carbon isotopic signatures ((13)C and (14)C) combined with a three-source mixing model showed that DOC deposited in snow across the Icefield reflects fossil fuel combustion products (43-73%) and to a lesser extent marine (21-41%) and terrestrial sources (1-26%). Our finding that combustion aerosols are a large source of DOC to the glacier ecosystem during the early spring (April-May) together with the pronounced rates of glacier melting in the region suggests that the delivery of relic DOC to the ocean may be increasing and consequently impacting the biogeochemistry of glacial and proglacial ecosystems in unanticipated ways.

  4. Co-Infestation and Spatial Distribution of Bactrocera carambolae and Anastrepha spp. (Diptera: Tephritidae) in Common Guava in the Eastern Amazon

    PubMed Central

    Deus, E. G.; Godoy, W. A. C.; Sousa, M. S. M.; Lopes, G. N.; Jesus-Barros, C. R.; Silva, J. G.; Adaime, R.

    2016-01-01

    Field infestation and spatial distribution of introduced Bactrocera carambolae Drew and Hancock and native species of Anastrepha in common guavas [Psidium guajava (L.)] were investigated in the eastern Amazon. Fruit sampling was carried out in the municipalities of Calçoene and Oiapoque in the state of Amapá, Brazil. The frequency distribution of larvae in fruit was fitted to the negative binomial distribution. Anastrepha striata was more abundant in both sampled areas in comparison to Anastrepha fraterculus (Wiedemann) and B. carambolae. The frequency distribution analysis of adults revealed an aggregated pattern for B. carambolae as well as for A. fraterculus and Anastrepha striata Schiner, described by the negative binomial distribution. Although the populations of Anastrepha spp. may have suffered some impact due to the presence of B. carambolae, the results are still not robust enough to indicate effective reduction in the abundance of Anastrepha spp. caused by B. carambolae in a general sense. The high degree of aggregation observed for both species suggests interspecific co-occurrence with the simultaneous presence of both species in the analysed fruit. Moreover, a significant fraction of uninfested guavas also indicated absence of competitive displacement. PMID:27638949

  5. Co-Infestation and Spatial Distribution of Bactrocera carambolae and Anastrepha spp. (Diptera: Tephritidae) in Common Guava in the Eastern Amazon.

    PubMed

    Deus, E G; Godoy, W A C; Sousa, M S M; Lopes, G N; Jesus-Barros, C R; Silva, J G; Adaime, R

    2016-01-01

    Field infestation and spatial distribution of introduced Bactrocera carambolae Drew and Hancock and native species of Anastrepha in common guavas [Psidium guajava (L.)] were investigated in the eastern Amazon. Fruit sampling was carried out in the municipalities of Calçoene and Oiapoque in the state of Amapá, Brazil. The frequency distribution of larvae in fruit was fitted to the negative binomial distribution. Anastrepha striata was more abundant in both sampled areas in comparison to Anastrepha fraterculus (Wiedemann) and B. carambolae The frequency distribution analysis of adults revealed an aggregated pattern for B. carambolae as well as for A. fraterculus and Anastrepha striata Schiner, described by the negative binomial distribution. Although the populations of Anastrepha spp. may have suffered some impact due to the presence of B. carambolae, the results are still not robust enough to indicate effective reduction in the abundance of Anastrepha spp. caused by B. carambolae in a general sense. The high degree of aggregation observed for both species suggests interspecific co-occurrence with the simultaneous presence of both species in the analysed fruit. Moreover, a significant fraction of uninfested guavas also indicated absence of competitive displacement.

  6. Co-Infestation and Spatial Distribution of Bactrocera carambolae and Anastrepha spp. (Diptera: Tephritidae) in Common Guava in the Eastern Amazon.

    PubMed

    Deus, E G; Godoy, W A C; Sousa, M S M; Lopes, G N; Jesus-Barros, C R; Silva, J G; Adaime, R

    2016-01-01

    Field infestation and spatial distribution of introduced Bactrocera carambolae Drew and Hancock and native species of Anastrepha in common guavas [Psidium guajava (L.)] were investigated in the eastern Amazon. Fruit sampling was carried out in the municipalities of Calçoene and Oiapoque in the state of Amapá, Brazil. The frequency distribution of larvae in fruit was fitted to the negative binomial distribution. Anastrepha striata was more abundant in both sampled areas in comparison to Anastrepha fraterculus (Wiedemann) and B. carambolae The frequency distribution analysis of adults revealed an aggregated pattern for B. carambolae as well as for A. fraterculus and Anastrepha striata Schiner, described by the negative binomial distribution. Although the populations of Anastrepha spp. may have suffered some impact due to the presence of B. carambolae, the results are still not robust enough to indicate effective reduction in the abundance of Anastrepha spp. caused by B. carambolae in a general sense. The high degree of aggregation observed for both species suggests interspecific co-occurrence with the simultaneous presence of both species in the analysed fruit. Moreover, a significant fraction of uninfested guavas also indicated absence of competitive displacement. PMID:27638949

  7. Classification of brain signals associated with imagination of hand grasping, opening and reaching by means of wavelet-based common spatial pattern and mutual information.

    PubMed

    Amanpour, Behzad; Erfanian, Abbas

    2013-01-01

    An important issue in designing a practical brain-computer interface (BCI) is the selection of mental tasks to be imagined. Different types of mental tasks have been used in BCI including left, right, foot, and tongue motor imageries. However, the mental tasks are different from the actions to be controlled by the BCI. It is desirable to select a mental task to be consistent with the desired action to be performed by BCI. In this paper, we investigated the detecting the imagination of the hand grasping, hand opening, and hand reaching in one hand using electroencephalographic (EEG) signals. The results show that the ERD/ERS patterns, associated with the imagination of hand grasping, opening, and reaching are different. For classification of brain signals associated with these mental tasks and feature extraction, a method based on wavelet packet, regularized common spatial pattern (CSP), and mutual information is proposed. The results of an offline analysis on five subjects show that the two-class mental tasks can be classified with an average accuracy of 77.6% using proposed method. In addition, we examine the proposed method on datasets IVa from BCI Competition III and IIa from BCI Competition IV. PMID:24110165

  8. Spatial variation in local work function as an origin of moiré contrast in scanning tunneling microscopy images of Pb thin films/Si(111)

    NASA Astrophysics Data System (ADS)

    Kim, Howon; Hasegawa, Yukio

    2016-08-01

    By scanning tunneling microscopy (STM), we measured an evolution of electrical conductance from the tunneling to point contact regimes on Pb thin films formed on a Si(111) substrate. Immediately before the contact formation, the conductance evolution curves exhibit an onset of the conductance that is presumably due to a short-range chemical interaction between the tip apex atom and surface atom(s), and we found that the onset can be utilized as a reference of the tip–sample distance. By measuring the spatial variation in onset distance, we investigated surface atomic corrugation in moiré-corrugated areas and found that the geometrical corrugation is negligibly small (less than 2 pm) on the surfaces of 7-monolayer Pb thin films. We also observed a local variation in apparent barrier height depending on the moiré contrast in the tunneling regime, which leads us to conclude that the spatial variation in local work function is the origin of the moiré corrugation observed in STM images.

  9. Fast and Furious: Shock heated gas as the origin of spatially resolved hard X-ray emission in the central 5 kpc of the galaxy merger NGC 6240

    SciTech Connect

    Wang, Junfeng; Nardini, Emanuele; Fabbiano, Giuseppina; Karovska, Margarita; Elvis, Martin; Risaliti, Guido; Zezas, Andreas; Pellegrini, Silvia; Max, Claire; U, Vivian

    2014-01-20

    We have obtained a deep, subarcsecond resolution X-ray image of the nuclear region of the luminous galaxy merger NGC 6240 with Chandra, which resolves the X-ray emission from the pair of active nuclei and the diffuse hot gas in great detail. We detect extended hard X-ray emission from kT ∼ 6 keV (∼70 MK) hot gas over a spatial scale of 5 kpc, indicating the presence of fast shocks with a velocity of ∼2200 km s{sup –1}. For the first time, we obtain the spatial distribution of this highly ionized gas emitting Fe XXV, which shows a remarkable correspondence to the large-scale morphology of H{sub 2}(1-0) S(1) line emission and Hα filaments. Propagation of fast shocks originating in the starburst-driven wind into the ambient dense gas can account for this morphological correspondence. With an observed L {sub 0.5-8} {sub keV} = 5.3 × 10{sup 41} erg s{sup –1}, the diffuse hard X-ray emission is ∼100 times more luminous than that observed in the classic starburst galaxy M82. Assuming a filling factor of 1% for the 70 MK temperature gas, we estimate its total mass (M {sub hot} = 1.8 × 10{sup 8} M {sub ☉}) and thermal energy (E {sub th} = 6.5 × 10{sup 57} erg). The total iron mass in the highly ionized plasma is M {sub Fe} = 4.6 × 10{sup 5} M {sub ☉}. Both the energetics and the iron mass in the hot gas are consistent with the expected injection from the supernovae explosion during the starburst that is commensurate with its high star formation rate. No evidence for fluorescent Fe I emission is found in the CO filament connecting the two nuclei.

  10. Fast and Furious: Shock Heated Gas as the Origin of Spatially Resolved Hard X-Ray Emission in the Central 5 kpc of the Galaxy Merger NGC 6240

    NASA Astrophysics Data System (ADS)

    Wang, Junfeng; Nardini, Emanuele; Fabbiano, Giuseppina; Karovska, Margarita; Elvis, Martin; Pellegrini, Silvia; Max, Claire; Risaliti, Guido; U, Vivian; Zezas, Andreas

    2014-01-01

    We have obtained a deep, subarcsecond resolution X-ray image of the nuclear region of the luminous galaxy merger NGC 6240 with Chandra, which resolves the X-ray emission from the pair of active nuclei and the diffuse hot gas in great detail. We detect extended hard X-ray emission from kT ~ 6 keV (~70 MK) hot gas over a spatial scale of 5 kpc, indicating the presence of fast shocks with a velocity of ~2200 km s-1. For the first time, we obtain the spatial distribution of this highly ionized gas emitting Fe XXV, which shows a remarkable correspondence to the large-scale morphology of H2(1-0) S(1) line emission and Hα filaments. Propagation of fast shocks originating in the starburst-driven wind into the ambient dense gas can account for this morphological correspondence. With an observed L 0.5-8 keV = 5.3 × 1041 erg s-1, the diffuse hard X-ray emission is ~100 times more luminous than that observed in the classic starburst galaxy M82. Assuming a filling factor of 1% for the 70 MK temperature gas, we estimate its total mass (M hot = 1.8 × 108 M ⊙) and thermal energy (E th = 6.5 × 1057 erg). The total iron mass in the highly ionized plasma is M Fe = 4.6 × 105 M ⊙. Both the energetics and the iron mass in the hot gas are consistent with the expected injection from the supernovae explosion during the starburst that is commensurate with its high star formation rate. No evidence for fluorescent Fe I emission is found in the CO filament connecting the two nuclei.

  11. Origin of the left subclavian artery as the first branch and origin of the right subclavian artery as the fourth branch of the aortic arch with crisscrossing posterior to the common carotid arteries

    PubMed Central

    Zhang, Junlin; Guileyardo, Joseph M.

    2016-01-01

    We describe an aortic arch anomaly consisting of the origin of the left subclavian artery as the fourth branch and the right subclavian artery as the first branch off the aortic arch with crisscrossing of these two arteries anterior to the trachea without clinical consequences. This anomaly, to our knowledge, has not been reported previously. PMID:27695185

  12. Origin of the left subclavian artery as the first branch and origin of the right subclavian artery as the fourth branch of the aortic arch with crisscrossing posterior to the common carotid arteries

    PubMed Central

    Zhang, Junlin; Guileyardo, Joseph M.

    2016-01-01

    We describe an aortic arch anomaly consisting of the origin of the left subclavian artery as the fourth branch and the right subclavian artery as the first branch off the aortic arch with crisscrossing of these two arteries anterior to the trachea without clinical consequences. This anomaly, to our knowledge, has not been reported previously.

  13. Haplotype variation of Glu-D1 locus and the origin of Glu-D1d allele conferring superior end-use qualities in common wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In common wheat (Triticum aestivum, AABBDD), the Glu-D1 locus possesses multiple alleles, with Glu-D1a (coding for 1Dx2 and 1Dy12 subunits) and Glu-D1d (encoding 1Dx5 and 1Dy10 subunits) being intensively used in the genetic improvement of end-use qualities. Here, we studied the molecular variatio...

  14. [The origin of novel proteins by gene duplication: what is common in evolution of the color-sensitive pigment proteins and translation termination factors].

    PubMed

    Zhuravleva, G A; Inge-Vechtomov, S G

    2009-01-01

    The review is discussing a role of duplications in evolution, including events from genes to genomes duplications. The important role of duplications is their participation in the block-modular reorganizations leading to a combination of fragments from various genes. Examples of gene duplications leading to occurrence of proteins with divergent functions are shown. For instance, human and Old World monkey trichromatic vision has arisen due to consecutive duplications of the genes encoding color-sensitive pigment proteins, and their subsequent divergence. Many proteins participating in regulation and the control of protein synthesis have resulted from series of gene duplications that has led to origin of modern translation elongation and termination factors. It is supposed, that proteins participating in the control of newly synthesized mRNA quality have arisen also due to duplication of the genes encoding ancient translation elongation factors. Their subsequent divergence has led to the origin of proteins with the new properties, but already unable to participate in the control of translation. PMID:19899624

  15. [The origin of novel proteins by gene duplication: what is common in evolution of the color-sensitive pigment proteins and translation termination factors].

    PubMed

    Zhuravleva, G A; Inge-Vechtomov, S G

    2009-01-01

    The review is discussing a role of duplications in evolution, including events from genes to genomes duplications. The important role of duplications is their participation in the block-modular reorganizations leading to a combination of fragments from various genes. Examples of gene duplications leading to occurrence of proteins with divergent functions are shown. For instance, human and Old World monkey trichromatic vision has arisen due to consecutive duplications of the genes encoding color-sensitive pigment proteins, and their subsequent divergence. Many proteins participating in regulation and the control of protein synthesis have resulted from series of gene duplications that has led to origin of modern translation elongation and termination factors. It is supposed, that proteins participating in the control of newly synthesized mRNA quality have arisen also due to duplication of the genes encoding ancient translation elongation factors. Their subsequent divergence has led to the origin of proteins with the new properties, but already unable to participate in the control of translation.

  16. The Temporal Context Model in Spatial Navigation and Relational Learning: Toward a Common Explanation of Medial Temporal Lobe Function Across Domains

    ERIC Educational Resources Information Center

    Howard, Marc W.; Fotedar, Mrigankka S.; Datey, Aditya V.; Hasselmo, Michael E.

    2005-01-01

    The medial temporal lobe (MTL) has been studied extensively at all levels of analysis, yet its function remains unclear. Theory regarding the cognitive function of the MTL has centered along 3 themes. Different authors have emphasized the role of the MTL in episodic recall, spatial navigation, or relational memory. Starting with the temporal…

  17. Mapping the spatial variations of the hydrographic properties of warm subtropical-origin waters penetrating the previously unmapped glacial fjords of Northwest Greenland

    NASA Astrophysics Data System (ADS)

    Fenty, I. G.; Rignot, E. J.; Willis, J. K.

    2015-12-01

    Motivated by the widely-recognized need to understand the possible connection between the warming subpolar North Atlantic Ocean and the increasing contribution to sea level rise due to ice mass loss from the Greenland Ice Sheet multiple hydrographic and bathymetric surveys were conducted in the summer 2015 under the aegis of the NASA sub-orbital mission, Oceans Melting Greenland (OMG). Here, we report for the first time on the spatial variations of the hydrographic properties of the warm, subsurface subtropical-origin waters penetrating the numerous previously unmapped glacial fjords of Northwest Greenland spanning more than 1000 km of coast between Upernavik Fjord (73°N) and Inglefield Gulf (77.5°N). To interpret the distribution of hydrographic properties of these warm subsurface waters above the inner continental shelf and within glacial fjords, we analyze more than 5500 km of new high-resolution swath bathymetry and 1000 km of single-beam bathymetry data. These new bathymetry data reveal a network of deep troughs within which warm subsurface waters can penetrate from the continental shelf into glacial fjords and numerous shallow sills and ledges that inhibit the warm water contact with glacial termini. While these new hydrographic data are synoptic and therefore cannot reveal information about hydrographic temporal variability, the positive identification of warm waters in some glacial fjords in mid to late summer when subglacial discharge-fueled submarine melting is greatest provides useful information about the vulnerability of certain marine-terminating glaciers to future ocean-forced thinning, retreat, and acceleration.

  18. The systematic profiling of false identity documents: method validation and performance evaluation using seizures known to originate from common and different sources.

    PubMed

    Baechler, Simon; Terrasse, Vincent; Pujol, Jean-Philippe; Fritz, Thibaud; Ribaux, Olivier; Margot, Pierre

    2013-10-10

    False identity documents constitute a potential powerful source of forensic intelligence because they are essential elements of transnational crime and provide cover for organized crime. In previous work, a systematic profiling method using false documents' visual features has been built within a forensic intelligence model. In the current study, the comparison process and metrics lying at the heart of this profiling method are described and evaluated. This evaluation takes advantage of 347 false identity documents of four different types seized in two countries whose sources were known to be common or different (following police investigations and dismantling of counterfeit factories). Intra-source and inter-sources variations were evaluated through the computation of more than 7500 similarity scores. The profiling method could thus be validated and its performance assessed using two complementary approaches to measuring type I and type II error rates: a binary classification and the computation of likelihood ratios. Very low error rates were measured across the four document types, demonstrating the validity and robustness of the method to link documents to a common source or to differentiate them. These results pave the way for an operational implementation of a systematic profiling process integrated in a developed forensic intelligence model. PMID:24053879

  19. The systematic profiling of false identity documents: method validation and performance evaluation using seizures known to originate from common and different sources.

    PubMed

    Baechler, Simon; Terrasse, Vincent; Pujol, Jean-Philippe; Fritz, Thibaud; Ribaux, Olivier; Margot, Pierre

    2013-10-10

    False identity documents constitute a potential powerful source of forensic intelligence because they are essential elements of transnational crime and provide cover for organized crime. In previous work, a systematic profiling method using false documents' visual features has been built within a forensic intelligence model. In the current study, the comparison process and metrics lying at the heart of this profiling method are described and evaluated. This evaluation takes advantage of 347 false identity documents of four different types seized in two countries whose sources were known to be common or different (following police investigations and dismantling of counterfeit factories). Intra-source and inter-sources variations were evaluated through the computation of more than 7500 similarity scores. The profiling method could thus be validated and its performance assessed using two complementary approaches to measuring type I and type II error rates: a binary classification and the computation of likelihood ratios. Very low error rates were measured across the four document types, demonstrating the validity and robustness of the method to link documents to a common source or to differentiate them. These results pave the way for an operational implementation of a systematic profiling process integrated in a developed forensic intelligence model.

  20. On the tool use behavior of the bonobo-chimpanzee last common ancestor, and the origins of hominine stone tool use.

    PubMed

    Haslam, Michael

    2014-10-01

    The last common ancestor (LCA) shared by chimpanzees (Pan troglodytes) and bonobos (P. paniscus) was an Early Pleistocene African ape, which, based on the behavior of modern chimpanzees, may be assumed to be a tool-using animal. However, the character of tool use in the Pan lineage prior to the 20th century is largely unknown. Here, I use available data on wild bonobo tool use and emerging molecular estimates of demography during Pan evolution to hypothesise the plausible tool use behavior of the bonobo-chimpanzee LCA (or "Pancestor") at the start of the Pleistocene, over 2 million years ago. This method indicates that the common ancestor of living Pan apes likely used plant tools for probing, sponging, and display, but it did not use stone tools. Instead, stone tool use appears to have been independently invented by Western African chimpanzees (P. t. verus) during the Middle Pleistocene in the region of modern Liberia-Ivory Coast-Guinea, possibly as recently as 200,000-150,000 years ago. If this is the case, then the LCA of humans and chimpanzees likely also did not use stone tools, and this trait probably first emerged among hominins in Pliocene East Africa. This review also suggests that the consistently higher population sizes of Central African chimpanzees (P. t. troglodytes) over the past million years may have contributed to the increased complexity of wild tool use seen in this sub-species today.

  1. Spatial patterns in PCBs, pesticides, mercury and cadmium in the common sole in the NW Mediterranean Sea, and a novel use of contaminants as biomarkers.

    PubMed

    Dierking, J; Wafo, E; Schembri, T; Lagadec, V; Nicolas, C; Letourneur, Y; Harmelin-Vivien, M

    2009-11-01

    We assessed spatial patterns in 37 PCB congeners, eight pesticides, and the heavy metals mercury and cadmium in the flatfish Solea solea at four sites in the Gulf of Lions (NW Mediterranean). Overall contaminant concentrations generally exceeded those reported for S. solea elsewhere, but fell into the range of other Gulf fishes, testifying of a relatively high contaminant load of this area. Spatial patterns in all three contaminant classes were highly significant, but differed among classes. PCB congener and chlorination class profiles also differed among sites. The observed patterns would be consistent with (1) PCB point-sources in the Eastern Gulf (Marseille, Rhone River) versus dominance of atmospheric input in the West, (2) pesticide input by the Rhone and from agricultural fields in the West, and (3) mercury point-sources near Marseille. The unique, site-specific contaminant profiles prove to be a powerful tool to differentiate between S. solea populations from different sites. PMID:19692097

  2. How tufted capuchin monkeys (Cebus apella spp) and common chimpanzees (Pan troglodytes) align objects to surfaces: Insights into spatial reasoning and implications for tool use

    PubMed Central

    Fragaszy, Dorothy M.; Stone, Brian; Scott, Nicole M.; Menzel, Charles

    2011-01-01

    This report addresses phylogenetic variation in a spatial skill that underlies tool use: aligning objects to a feature of a surface. Fragaszy and Cummins-Sebree’s [2005] model of relational spatial reasoning and Skill Development and Perception-Action theories guided the design of the study. We examined how capuchins and chimpanzees place stick objects of varying shapes into matching grooves on a flat surface. Although most individuals aligned the long axis of the object with the matching groove more often than expected by chance, all typically did so with poor precision. Some individuals managed to align a second feature, and only one (a capuchin monkey) achieved above-chance success at aligning three features with matching grooves. Our findings suggest that capuchins and chimpanzees do not reliably align objects along even one axis, and that neither species can reliably or easily master object placement tasks that require managing two or more spatial relations concurrently. Moreover, they did not systematically vary their behavior in a manner that would aid discovery of the affordances of the stick-surface combination beyond sliding the stick along the surface (which may have provided haptic information about the location of the groove). These limitations have profound consequences for the forms of tool use we can expect these individuals to master. PMID:21608008

  3. Bioenergetics in human evolution and disease: implications for the origins of biological complexity and the missing genetic variation of common diseases

    PubMed Central

    Wallace, Douglas C.

    2013-01-01

    Two major inconsistencies exist in the current neo-Darwinian evolutionary theory that random chromosomal mutations acted on by natural selection generate new species. First, natural selection does not require the evolution of ever increasing complexity, yet this is the hallmark of biology. Second, human chromosomal DNA sequence variation is predominantly either neutral or deleterious and is insufficient to provide the variation required for speciation or for predilection to common diseases. Complexity is explained by the continuous flow of energy through the biosphere that drives the accumulation of nucleic acids and information. Information then encodes complex forms. In animals, energy flow is primarily mediated by mitochondria whose maternally inherited mitochondrial DNA (mtDNA) codes for key genes for energy metabolism. In mammals, the mtDNA has a very high mutation rate, but the deleterious mutations are removed by an ovarian selection system. Hence, new mutations that subtly alter energy metabolism are continuously introduced into the species, permitting adaptation to regional differences in energy environments. Therefore, the most phenotypically significant gene variants arise in the mtDNA, are regional, and permit animals to occupy peripheral energy environments where rarer nuclear DNA (nDNA) variants can accumulate, leading to speciation. The neutralist–selectionist debate is then a consequence of mammals having two different evolutionary strategies: a fast mtDNA strategy for intra-specific radiation and a slow nDNA strategy for speciation. Furthermore, the missing genetic variation for common human diseases is primarily mtDNA variation plus regional nDNA variants, both of which have been missed by large, inter-population association studies. PMID:23754818

  4. Evidence for a Common Origin of Blacksmiths and Cultivators in the Ethiopian Ari within the Last 4500 Years: Lessons for Clustering-Based Inference

    PubMed Central

    van Dorp, Lucy; Balding, David; Myers, Simon; Pagani, Luca; Tyler-Smith, Chris; Bekele, Endashaw; Tarekegn, Ayele; Thomas, Mark G.; Bradman, Neil; Hellenthal, Garrett

    2015-01-01

    The Ari peoples of Ethiopia are comprised of different occupational groups that can be distinguished genetically, with Ari Cultivators and the socially marginalised Ari Blacksmiths recently shown to have a similar level of genetic differentiation between them (F ST ≈ 0.023 − 0.04) as that observed among multiple ethnic groups sampled throughout Ethiopia. Anthropologists have proposed two competing theories to explain the origins of the Ari Blacksmiths as (i) remnants of a population that inhabited Ethiopia prior to the arrival of agriculturists (e.g. Cultivators), or (ii) relatively recently related to the Cultivators but presently marginalized in the community due to their trade. Two recent studies by different groups analysed genome-wide DNA from samples of Ari Blacksmiths and Cultivators and suggested that genetic patterns between the two groups were more consistent with model (i) and subsequent assimilation of the indigenous peoples into the expanding agriculturalist community. We analysed the same samples using approaches designed to attenuate signals of genetic differentiation that are attributable to allelic drift within a population. By doing so, we provide evidence that the genetic differences between Ari Blacksmiths and Cultivators can be entirely explained by bottleneck effects consistent with hypothesis (ii). This finding serves as both a cautionary tale about interpreting results from unsupervised clustering algorithms, and suggests that social constructions are contributing directly to genetic differentiation over a relatively short time period among previously genetically similar groups. PMID:26291793

  5. Genomic and phylogenetic analyses of an adenovirus isolated from a corn snake (Elaphe guttata) imply a common origin with members of the proposed new genus Atadenovirus.

    PubMed

    Farkas, Szilvia L; Benko, Mária; Elo, Péter; Ursu, Krisztina; Dán, Adám; Ahne, Winfried; Harrach, Balázs

    2002-10-01

    Approximately 60% of the genome of an adenovirus isolated from a corn snake (Elaphe guttata) was cloned and sequenced. The results of homology searches showed that the genes of the corn snake adenovirus (SnAdV-1) were closest to their counterparts in members of the recently proposed new genus ATADENOVIRUS: In phylogenetic analyses of the complete hexon and protease genes, SnAdV-1 indeed clustered together with the atadenoviruses. The characteristic features in the genome organization of SnAdV-1 included the presence of a gene homologous to that for protein p32K, the lack of structural proteins V and IX and the absence of homologues of the E1A and E3 regions. These characteristics are in accordance with the genus-defining markers of atadenoviruses. Comparison of the cleavage sites of the viral protease in core protein pVII also confirmed SnAdV-1 as a candidate member of the genus ATADENOVIRUS: Thus, the hypothesis on the possible reptilian origin of atadenoviruses (Harrach, Acta Veterinaria Hungarica 48, 484-490, 2000) seems to be supported. However, the base composition of DNA sequence (>18 kb) determined from the SnAdV-1 genome showed an equilibrated GC content of 51%, which is unusual for an atadenovirus.

  6. Low- and high-TiO 2 flood basalts of southern Brazil: origin from picritic parentage and a common mantle source

    NASA Astrophysics Data System (ADS)

    Fodor, R. V.

    1987-08-01

    The Serra Geral (Paraná) continental flood-basalt province of southern Brazil has two main basalt types: low-TiO 2 (˜ 1 wt.%) basalts occupy the southern portion, and high-TiO 2 (> 3 wt.%) basalts are largely in the northern part. Low-Ti basalts are less evolved (Mg# 60) and more radiogenic (e.g., 87Sr/ 86Sr˜ 0.708) than high-Ti basalts (Mg# 35; 87Sr/ 86Sr˜ 0.705). This is consistent with a model that invokes variable melting of a single mantle source to produce picritic magmas that have relatively lower and higher incompatible element contents. Varying percentages of melting can be related to varying proximity to the early Tristan da Cunha hotspot. The Mg-rich magmas fractionated 60-75% olivine, clinopyroxene, and plagioclase to yield low- or high-Ti flood basalts, assimilating more or less crust in the process. The extent of fractionation and assimilation depended on crustal "warmth" (also tied to location relative to hotspot): (1) above zones of ˜ 25% melting, warm crust relatively easily contaminated crystallizing picritic magma that originated by a high degree of melting (i.e., magma with lower incompatible element contents); additionally, high degrees of melting sustained replenishment of magma with low-Ti magma characteristics; (2) above ˜ 10% melting zones, cooler crust comparatively restricted assimilation during crystallization (of magma with higher incompatible element contents) and permitted magma evolution to high-Ti derivatives; lesser degrees of melting also limited replenishment magma and thereby allowed greater evolution of existing magma. This model refers all diagnostic geochemical and isotopic features of Serra Geral basalts to percentages of partial melting of an essentially homogeneous mantle material.

  7. Older adults' fears about diabetes: using common sense models of disease to understand fear origins and implications for self-management.

    PubMed

    Quandt, Sara A; Reynolds, Teresa; Chapman, Christine; Bell, Ronny A; Grzywacz, Joseph G; Ip, Edward H; Kirk, Julienne K; Arcury, Thomas A

    2013-10-01

    This study examines older adults' fears of diabetes complications and their effects on self-management practices. Existing models of diabetes self-management posit that patients' actions are grounded in disease beliefs and experience, but there is little supporting evidence. In-depth qualitative interviews were conducted with a community-based sample of 74 African American, American Indian, and white older adults with diabetes. Analysis uses Leventhal's Common Sense Model of Diabetes to link fears to early experience and current self-management. Sixty-three identified fears focused on complications that could limit carrying out normal activities: amputation, blindness, low blood glucose and coma, and disease progression to insulin use and dialysis. Most focused self-management on actions to prevent specific complications, rather than on managing the disease as a whole. Early experiences focused attention on the inevitability of complications and the limited ability of patients to prevent them. Addressing older adults' fears about diabetes may improve their diabetes self-management practices.

  8. Exploration of the mechanisms of temperature-dependent grain boundary mobility: Search for the common origin of ultrafast grain boundary motion

    DOE PAGES

    O’Brien, C. J.; Foiles, S. M.

    2016-04-19

    The temperature dependence of grain boundary mobility is complex, varied, and rarely fits ideal Arrhenius behavior. This work presents a series of case studies of planar grain boundaries in a model FCC system that were previously demonstrated to exhibit a variety of temperature-dependent mobility behaviors. It is demonstrated that characterization of the mobility versus temperature plots is not sufficient to predict the atomic motion mechanism of the grain boundaries. Herein, the temperature-dependent motion and atomistic motion mechanisms of planar grain boundaries are driven by a synthetic, orientation-dependent, driving force. The systems studied include CSL boundaries with Σ values of 5,more » 7, and 15, including both symmetric and asymmetric boundaries. These boundaries represent a range of temperature-dependent trends including thermally activated, antithermal, and roughening behaviors. Examining the atomic-level motion mechanisms of the thermally activated boundaries reveals that each involves a complex shuffle, and at least one atom that changes the plane it resides on. The motion mechanism of the antithermal boundary is qualitatively different and involves an in-plane coordinated shuffle that rotates atoms about a fixed atom lying on a point in the coincident site lattice. Furthermore, this provides a mechanistic reason for the observed high mobility, even at low temperatures, which is due to the low activation energy needed for such motion. However, it will be demonstrated that this mechanism is not universal, or even common, to other boundaries exhibiting non-thermally activated motion. This work concludes that no single atomic motion mechanism is sufficient to explain the existence of non-thermally activated boundary motion.« less

  9. The drug:H+ antiporters of family 2 (DHA2), siderophore transporters (ARN) and glutathione:H+ antiporters (GEX) have a common evolutionary origin in hemiascomycete yeasts

    PubMed Central

    2013-01-01

    siderophore transporters are abundant in the Hemiascomycetes and form an ancient gene lineage extending to the filamentous fungi. Conclusions The evolutionary history of DHA2, ARN and GEX genes was reconstructed and a common evolutionary root shared by the encoded proteins is hypothesized. A new protein family, denominated DAG, is proposed to span these three phylogenetic subfamilies of 14-spanner MFS transporters. PMID:24345006

  10. Comparative genome analysis of Lactobacillus casei strains isolated from Actimel and Yakult products reveals marked similarities and points to a common origin.

    PubMed

    Douillard, François P; Kant, Ravi; Ritari, Jarmo; Paulin, Lars; Palva, Airi; de Vos, Willem M

    2013-09-01

    The members of the Lactobacillus genus are widely used in the food and feed industry and show a remarkable ecological adaptability. Several Lactobacillus strains have been marketed as probiotics as they possess health-promoting properties for the host. In the present study, we used two complementary next-generation sequencing technologies to deduce the genome sequences of two Lactobacillus casei strains LcA and LcY, which were isolated from the products Actimel and Yakult, commercialized as probiotics. The LcA and LcY draft genomes have, respectively, an estimated size of 3067 and 3082 Mb and a G+C content of 46.3%. Both strains are close to identical to each other and differ by no more than minor chromosomal re-arrangements, substitutions, insertions and deletions, as evident from the verified presence of one insertion-deletion (InDel) and only 29 single-nucleotide polymorphisms (SNPs). In terms of coding capacity, LcA and LcY are predicted to encode a comparable exoproteome, indicating that LcA and LcY are likely to establish similar interactions with human intestinal cells. Moreover, both L. casei LcA and LcY harboured a 59.6 kb plasmid that shared high similarities with plasmids found in other L. casei strains, such as W56 and BD-II. Further analysis revealed that the L. casei plasmids constitute a good evolution marker within the L. casei species. The plasmids of the LcA and LcY strains are almost identical, as testified by the presence of only three verified SNPs, and share a 3.5 kb region encoding a remnant of a lactose PTS system that is absent from the plasmids of W56 and BD-II but conserved in another smaller L. casei plasmid (pLC2W). Our observations imply that the results obtained in animal and human experiments performed with the Actimel and Yakult strains can be compared with each other as these strains share a very recent common ancestor. PMID:23815335

  11. Comparative genome analysis of Lactobacillus casei strains isolated from Actimel and Yakult products reveals marked similarities and points to a common origin

    PubMed Central

    Douillard, François P; Kant, Ravi; Ritari, Jarmo; Paulin, Lars; Palva, Airi; Vos, Willem M

    2013-01-01

    Summary The members of the Lactobacillus genus are widely used in the food and feed industry and show a remarkable ecological adaptability. Several Lactobacillus strains have been marketed as probiotics as they possess health-promoting properties for the host. In the present study, we used two complementary next-generation sequencing technologies to deduce the genome sequences of two Lactobacillus casei strains LcA and LcY, which were isolated from the products Actimel and Yakult, commercialized as probiotics. The LcA and LcY draft genomes have, respectively, an estimated size of 3067 and 3082 Mb and a G+C content of 46.3%. Both strains are close to identical to each other and differ by no more than minor chromosomal re-arrangements, substitutions, insertions and deletions, as evident from the verified presence of one insertion-deletion (InDel) and only 29 single-nucleotide polymorphisms (SNPs). In terms of coding capacity, LcA and LcY are predicted to encode a comparable exoproteome, indicating that LcA and LcY are likely to establish similar interactions with human intestinal cells. Moreover, both L. casei LcA and LcY harboured a 59.6 kb plasmid that shared high similarities with plasmids found in other L. casei strains, such as W56 and BD-II. Further analysis revealed that the L. casei plasmids constitute a good evolution marker within the L. casei species. The plasmids of the LcA and LcY strains are almost identical, as testified by the presence of only three verified SNPs, and share a 3.5 kb region encoding a remnant of a lactose PTS system that is absent from the plasmids of W56 and BD-II but conserved in another smaller L. casei plasmid (pLC2W). Our observations imply that the results obtained in animal and human experiments performed with the Actimel and Yakult strains can be compared with each other as these strains share a very recent common ancestor. Funding Information The present work was supported by the Center of Excellence in

  12. The Temporal Context Model in spatial navigation and relational learning: Toward a common explanation of medial temporal lobe function across domains

    PubMed Central

    Howard, Marc W.; Fotedar, Mrigankka S.; Datey, Aditya V.; Hasselmo, Michael E.

    2005-01-01

    The medial temporal lobe (MTL) has been studied extensively at all levels of analysis, yet its function remains unclear. Theory regarding the cognitive function of the MTL has centered along 3 themes. Different authors have emphasized the role of the MTL in episodic recall, spatial navigation, or relational memory. Starting with the temporal context model (M. W. Howard and M. J. Kahana, 2002), a distributed memory model that has been applied to benchmark data from episodic recall tasks, the authors propose that the entorhinal cortex supports a gradually changing representation of temporal context and the hippocampus proper enables retrieval of these contextual states. Simulation studies show this hypothesis explains the firing of place cells in the entorhinal cortex and the behavioral effects of hippocampal lesion in relational memory tasks. These results constitute a first step towards a unified computational theory of MTL function that integrates neurophysiological, neuropsychological and cognitive findings. PMID:15631589

  13. Using Common Spatial Distributions of Atoms to Relate Functionally Divergent Influenza Virus N10 and N11 Protein Structures to Functionally Characterized Neuraminidase Structures, Toxin Cell Entry Domains, and Non-Influenza Virus Cell Entry Domains

    PubMed Central

    Weininger, Arthur; Weininger, Susan

    2015-01-01

    The ability to identify the functional correlates of structural and sequence variation in proteins is a critical capability. We related structures of influenza A N10 and N11 proteins that have no established function to structures of proteins with known function by identifying spatially conserved atoms. We identified atoms with common distributed spatial occupancy in PDB structures of N10 protein, N11 protein, an influenza A neuraminidase, an influenza B neuraminidase, and a bacterial neuraminidase. By superposing these spatially conserved atoms, we aligned the structures and associated molecules. We report spatially and sequence invariant residues in the aligned structures. Spatially invariant residues in the N6 and influenza B neuraminidase active sites were found in previously unidentified spatially equivalent sites in the N10 and N11 proteins. We found the corresponding secondary and tertiary structures of the aligned proteins to be largely identical despite significant sequence divergence. We found structural precedent in known non-neuraminidase structures for residues exhibiting structural and sequence divergence in the aligned structures. In N10 protein, we identified staphylococcal enterotoxin I-like domains. In N11 protein, we identified hepatitis E E2S-like domains, SARS spike protein-like domains, and toxin components shared by alpha-bungarotoxin, staphylococcal enterotoxin I, anthrax lethal factor, clostridium botulinum neurotoxin, and clostridium tetanus toxin. The presence of active site components common to the N6, influenza B, and S. pneumoniae neuraminidases in the N10 and N11 proteins, combined with the absence of apparent neuraminidase function, suggests that the role of neuraminidases in H17N10 and H18N11 emerging influenza A viruses may have changed. The presentation of E2S-like, SARS spike protein-like, or toxin-like domains by the N10 and N11 proteins in these emerging viruses may indicate that H17N10 and H18N11 sialidase-facilitated cell

  14. Using common spatial distributions of atoms to relate functionally divergent influenza virus N10 and N11 protein structures to functionally characterized neuraminidase structures, toxin cell entry domains, and non-influenza virus cell entry domains.

    PubMed

    Weininger, Arthur; Weininger, Susan

    2015-01-01

    The ability to identify the functional correlates of structural and sequence variation in proteins is a critical capability. We related structures of influenza A N10 and N11 proteins that have no established function to structures of proteins with known function by identifying spatially conserved atoms. We identified atoms with common distributed spatial occupancy in PDB structures of N10 protein, N11 protein, an influenza A neuraminidase, an influenza B neuraminidase, and a bacterial neuraminidase. By superposing these spatially conserved atoms, we aligned the structures and associated molecules. We report spatially and sequence invariant residues in the aligned structures. Spatially invariant residues in the N6 and influenza B neuraminidase active sites were found in previously unidentified spatially equivalent sites in the N10 and N11 proteins. We found the corresponding secondary and tertiary structures of the aligned proteins to be largely identical despite significant sequence divergence. We found structural precedent in known non-neuraminidase structures for residues exhibiting structural and sequence divergence in the aligned structures. In N10 protein, we identified staphylococcal enterotoxin I-like domains. In N11 protein, we identified hepatitis E E2S-like domains, SARS spike protein-like domains, and toxin components shared by alpha-bungarotoxin, staphylococcal enterotoxin I, anthrax lethal factor, clostridium botulinum neurotoxin, and clostridium tetanus toxin. The presence of active site components common to the N6, influenza B, and S. pneumoniae neuraminidases in the N10 and N11 proteins, combined with the absence of apparent neuraminidase function, suggests that the role of neuraminidases in H17N10 and H18N11 emerging influenza A viruses may have changed. The presentation of E2S-like, SARS spike protein-like, or toxin-like domains by the N10 and N11 proteins in these emerging viruses may indicate that H17N10 and H18N11 sialidase-facilitated cell

  15. Comparative genomic and phylogenetic analyses of Gammaproteobacterial glg genes traced the origin of the Escherichia coli glycogen glgBXCAP operon to the last common ancestor of the sister orders Enterobacteriales and Pasteurellales.

    PubMed

    Almagro, Goizeder; Viale, Alejandro M; Montero, Manuel; Rahimpour, Mehdi; Muñoz, Francisco José; Baroja-Fernández, Edurne; Bahaji, Abdellatif; Zúñiga, Manuel; González-Candelas, Fernando; Pozueta-Romero, Javier

    2015-01-01

    Production of branched α-glucan, glycogen-like polymers is widely spread in the Bacteria domain. The glycogen pathway of synthesis and degradation has been fairly well characterized in the model enterobacterial species Escherichia coli (order Enterobacteriales, class Gammaproteobacteria), in which the cognate genes (branching enzyme glgB, debranching enzyme glgX, ADP-glucose pyrophosphorylase glgC, glycogen synthase glgA, and glycogen phosphorylase glgP) are clustered in a glgBXCAP operon arrangement. However, the evolutionary origin of this particular arrangement and of its constituent genes is unknown. Here, by using 265 complete gammaproteobacterial genomes we have carried out a comparative analysis of the presence, copy number and arrangement of glg genes in all lineages of the Gammaproteobacteria. These analyses revealed large variations in glg gene presence, copy number and arrangements among different gammaproteobacterial lineages. However, the glgBXCAP arrangement was remarkably conserved in all glg-possessing species of the orders Enterobacteriales and Pasteurellales (the E/P group). Subsequent phylogenetic analyses of glg genes present in the Gammaproteobacteria and in other main bacterial groups indicated that glg genes have undergone a complex evolutionary history in which horizontal gene transfer may have played an important role. These analyses also revealed that the E/P glgBXCAP genes (a) share a common evolutionary origin, (b) were vertically transmitted within the E/P group, and (c) are closely related to glg genes of some phylogenetically distant betaproteobacterial species. The overall data allowed tracing the origin of the E. coli glgBXCAP operon to the last common ancestor of the E/P group, and also to uncover a likely glgBXCAP transfer event from the E/P group to particular lineages of the Betaproteobacteria.

  16. Comparative Genomic and Phylogenetic Analyses of Gammaproteobacterial glg Genes Traced the Origin of the Escherichia coli Glycogen glgBXCAP Operon to the Last Common Ancestor of the Sister Orders Enterobacteriales and Pasteurellales

    PubMed Central

    Almagro, Goizeder; Viale, Alejandro M.; Montero, Manuel; Rahimpour, Mehdi; Muñoz, Francisco José; Baroja-Fernández, Edurne; Bahaji, Abdellatif; Zúñiga, Manuel; González-Candelas, Fernando; Pozueta-Romero, Javier

    2015-01-01

    Production of branched α-glucan, glycogen-like polymers is widely spread in the Bacteria domain. The glycogen pathway of synthesis and degradation has been fairly well characterized in the model enterobacterial species Escherichia coli (order Enterobacteriales, class Gammaproteobacteria), in which the cognate genes (branching enzyme glgB, debranching enzyme glgX, ADP-glucose pyrophosphorylase glgC, glycogen synthase glgA, and glycogen phosphorylase glgP) are clustered in a glgBXCAP operon arrangement. However, the evolutionary origin of this particular arrangement and of its constituent genes is unknown. Here, by using 265 complete gammaproteobacterial genomes we have carried out a comparative analysis of the presence, copy number and arrangement of glg genes in all lineages of the Gammaproteobacteria. These analyses revealed large variations in glg gene presence, copy number and arrangements among different gammaproteobacterial lineages. However, the glgBXCAP arrangement was remarkably conserved in all glg-possessing species of the orders Enterobacteriales and Pasteurellales (the E/P group). Subsequent phylogenetic analyses of glg genes present in the Gammaproteobacteria and in other main bacterial groups indicated that glg genes have undergone a complex evolutionary history in which horizontal gene transfer may have played an important role. These analyses also revealed that the E/P glgBXCAP genes (a) share a common evolutionary origin, (b) were vertically transmitted within the E/P group, and (c) are closely related to glg genes of some phylogenetically distant betaproteobacterial species. The overall data allowed tracing the origin of the E. coli glgBXCAP operon to the last common ancestor of the E/P group, and also to uncover a likely glgBXCAP transfer event from the E/P group to particular lineages of the Betaproteobacteria. PMID:25607991

  17. 'Berries' and Rock Share Common Origins

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This false-color composite image, taken at a region of the rock outcrop dubbed 'Shoemaker's Patio' near the Mars Exploration Rover Opportunity's landing site, shows finely layered sediments, which have been accentuated by erosion. The sphere-like grains or 'blueberries' distributed throughout the outcrop can be seen lining up with individual layers. This observation indicates that the spherules are geologic features called concretions, which form in pre-existing wet sediments. Other sphere-like grains, such as impact spherules or volcanic lapilli (fragments of material etween 2 and 64 millimeters or .08 and 2.5 inches in maximum dimension that are ejected from a volcano) are thought to be deposited with sediments and thus would form layers distinct from those of the rocks. This image was captured by the rover's panoramic camera on the 50th martian day, or sol, of the mission. Data from the camera's infrared, green and violet filters were used to create this false-color picture.

  18. Common Cold

    MedlinePlus

    ... nose, coughing - everyone knows the symptoms of the common cold. It is probably the most common illness. In ... avoid colds. There is no cure for the common cold. For relief, try Getting plenty of rest Drinking ...

  19. Spatial variation of chemical constituents from the burning of commonly used biomass fuels in rural areas of the Indo-Gangetic Plain (IGP), India

    NASA Astrophysics Data System (ADS)

    Saud, T.; Saxena, M.; Singh, D. P.; Saraswati; Dahiya, Manisha; Sharma, S. K.; Datta, A.; Gadi, Ranu; Mandal, T. K.

    2013-06-01

    In the present paper, we have determined emission factor of chemical composition of the emission from the burning of biomass (e.g. Dung cake, Acacia, Neem, Mulberry, Indian Rosewood, Pigeon pea etc.) commonly used as a residential fuel in the rural sector of Indo-Gangetic Plain (IGP) (Delhi, Punjab, Haryana, Uttar Pradesh, Bihar and West Bengal), India. For comparison, we have selected only those biomass fuels, which are used in at least three of the above mentioned states. Dung cake from all the states reports highest emission of particulate matter (PM) (15.68 g kg-1), Organic Carbon (OC) (4.32 g kg-1) and Elemental Carbon (EC) (0.51 g kg-1). Among all biomass fuels studied, agricultural residue reports substantial amount of emission of Na+ (104 mg kg-1), K+ (331 mg kg-1) and Cl- (447 mg kg-1) particularly in Pigeon pea and Mustard stem. Eucalyptus (fuel wood) emits large amounts of Ca2+ (21.47 mg kg-1) and NO3- (614 mg kg-1). The emission of PM from dung cake is higher in Delhi (19.31 g kg-1) and followed by Uttar Pradesh (17.58 g kg-1) > Haryana (15.46 g kg-1) > Bihar (14.99 g kg-1) > Punjab (12.06 g kg-1) > West Bengal (5.90 g kg-1). Carbonaceous aerosols (OC and EC) and dominant Ionic species (Cl-, K+, SO42-, NO3- and PO43-) are altogether contributing 40-70% of total emissions. Characteristics and ratios of chemical species of emissions may help to develop a methodology of discriminating the sources of ambient particulate matter. Using a laboratory determined emission factor of chemical species, we have determined the emission budget over IGP, India.

  20. Spatial Localization in Dissipative Systems

    NASA Astrophysics Data System (ADS)

    Knobloch, E.

    2015-03-01

    Spatial localization is a common feature of physical systems, occurring in both conservative and dissipative systems. This article reviews the theoretical foundations of our understanding of spatial localization in forced dissipative systems, from both a mathematical point of view and a physics perspective. It explains the origin of the large multiplicity of simultaneously stable spatially localized states present in a parameter region called the pinning region and its relation to the notion of homoclinic snaking. The localized states are described as bound states of fronts, and the notions of front pinning, self-pinning, and depinning are emphasized. Both one-dimensional and two-dimensional systems are discussed, and the reasons behind the differences in behavior between dissipative systems with conserved and nonconserved dynamics are explained. The insights gained are specific to forced dissipative systems and are illustrated here using examples drawn from fluid mechanics (convection and shear flows) and a simple model of crystallization.

  1. 40Ar/ 39Ar ages of mafic dykes from the Mesoproterozoic Chhattisgarh basin, Bastar craton, Central India: Implication for the origin and spatial extent of the Deccan Large Igneous Province

    NASA Astrophysics Data System (ADS)

    Rao, N. V. Chalapathi; Burgess, R.; Lehmann, B.; Mainkar, D.; Pande, S. K.; Hari, K. R.; Bodhankar, N.

    2011-08-01

    We present 40Ar/ 39Ar whole-rock ages of 63.7 ± 2.7 Ma (2σ, 92% Ar release) and 66.6 ± 2.2 Ma (2σ, 96% Ar release) for two samples of sub-surface mafic dykes intrusive into the sedimentary rocks of the Mesoproterozoic Chhattisgarh basin, Bastar craton, Central India. The obtained ages are synchronous with those of the Deccan Traps whose nearest exposures are at a distance of ~ 200 km to the west, and the recently dated diamondiferous orangeites (Group-II kimberlites) of the Mainpur area (located ~ 100 km SE within the Bastar craton). The chemical composition of the Chhattisgarh mafic dykes is indistinguishable from the chemostratigraphic horizons of the upper Deccan lavas of the Wai Subgroup (Ambenali and Poladpur Formations) and confirms them to be a part of the Deccan Large Igneous Province (LIP). The geological setting of the Deccan-age mafic dykes in the Chhattisgarh basin is analogous to that observed in other LIPs of the world such as (i) Pasco Basin of NW U.S.A, (ii) Ellisras sub-basin of southern Africa, (iii) Rift basins of New England in the NE U.S.A and (iv) the West Siberian Basin of Russia where LIP-related basalts and sills have been emplaced in distant domains from the main province. The Deccan-age of the Chhattisgarh dykes and the Mainpur orangeites permits a substantial increase of at least 8.5 × 10 4 km 2 in the spatial extent of the Deccan LIP. The temporal link at ~ 65 Ma between the Deccan Traps and (i) sub-surface mafic dykes within the Chhattisgarh basin and orangeites in the Bastar craton, (ii) Ambadongar carbonatite in western India, (iii) Salma mafic dyke in the Eastern Indian craton, (iv) Rajahmundry Traps off the eastern coast of southern India and (v) tholeiitic dykes and basalts from the Seychelles, suggests a common tectonomagmatic control, via a vast mantle plume-head of the order of 2000-2500 km. Our study has relevance to the (i) origin (plume vs non-plume) of the Deccan LIP, (ii) plumbing system for Deccan dykes and lavas in

  2. Common Cold

    MedlinePlus

    ... News & Events Volunteer NIAID > Health & Research Topics > Common Cold Skip Website Tools Website Tools Print this page ... Help people who are suffering from the common cold by volunteering for NIAID clinical studies on ClinicalTrials. ...

  3. Clays, common

    USGS Publications Warehouse

    Virta, R.L.

    1998-01-01

    Part of a special section on the state of industrial minerals in 1997. The state of the common clay industry worldwide for 1997 is discussed. Sales of common clay in the U.S. increased from 26.2 Mt in 1996 to an estimated 26.5 Mt in 1997. The amount of common clay and shale used to produce structural clay products in 1997 was estimated at 13.8 Mt.

  4. The analysis of core and symbiotic genes of rhizobia nodulating Vicia from different continents reveals their common phylogenetic origin and suggests the distribution of Rhizobium leguminosarum strains together with Vicia seeds.

    PubMed

    Alvarez-Martínez, Estela R; Valverde, Angel; Ramírez-Bahena, Martha Helena; García-Fraile, Paula; Tejedor, Carmen; Mateos, Pedro F; Santillana, Nery; Zúñiga, Doris; Peix, Alvaro; Velázquez, Encarna

    2009-08-01

    In this work, we analysed the core and symbiotic genes of rhizobial strains isolated from Vicia sativa in three soils from the Northwest of Spain, and compared them with other Vicia endosymbionts isolated in other geographical locations. The analysis of rrs, recA and atpD genes and 16S-23S rRNA intergenic spacer showed that the Spanish strains nodulating V. sativa are phylogenetically close to those isolated from V. sativa and V. faba in different European, American and Asian countries forming a group related to Rhizobium leguminosarum. The analysis of the nodC gene of strains nodulating V. sativa and V. faba in different continents showed they belong to a phylogenetically compact group indicating that these legumes are restrictive hosts. The results of the nodC gene analysis allow the delineation of the biovar viciae showing a common phylogenetic origin of V. sativa and V. faba endosymbionts in several continents. Since these two legume species are indigenous from Europe, our results suggest a world distribution of strains from R. leguminosarum together with the V. sativa and V. faba seeds and a close coevolution among chromosome, symbiotic genes and legume host in this Rhizobium-Vicia symbiosis.

  5. Student Commons

    ERIC Educational Resources Information Center

    Gordon, Douglas

    2010-01-01

    Student commons are no longer simply congregation spaces for students with time on their hands. They are integral to providing a welcoming environment and effective learning space for students. Many student commons have been transformed into spaces for socialization, an environment for alternative teaching methods, a forum for large group meetings…

  6. Differentiating Spatial Memory from Spatial Transformations

    ERIC Educational Resources Information Center

    Street, Whitney N.; Wang, Ranxiao Frances

    2014-01-01

    The perspective-taking task is one of the most common paradigms used to study the nature of spatial memory, and better performance for certain orientations is generally interpreted as evidence of spatial representations using these reference directions. However, performance advantages can also result from the relative ease in certain…

  7. Spatial differences of cellular origins and in vivo hypoxia modify contractile properties of pulmonary artery smooth muscle cells: lessons for arterial tissue engineering.

    PubMed

    Hall, S M; Soueid, A; Smith, T; Brown, R A; Haworth, S G; Mudera, V

    2007-01-01

    Tissue engineering of functional arteries is challenging. Within the pulmonary artery wall, smooth muscle cells (PASMCs) have site-specific developmental and functional phenotypes, reflecting differing contractile roles. The force generated by PASMCs isolated from the inner 25% and outer 50% of the media of intrapulmonary elastic arteries from five normal and eight chronically hypoxic (hypertensive) 14 day-old piglets was quantified in a three-dimensional (3D) collagen construct, using a culture force monitor. Outer medial PASMCs from normal piglets exerted more force (528 +/- 50 dynes) than those of hypoxic piglets (177 +/- 42 dynes; p < 0.01). Force generation by inner medial PASMCs from normal and hypoxic piglets was similar (349 +/- 35 and 239 +/- 60 dynes). In response to agonist (thromboxane) stimulation, all PASMCs from normal and hypoxic piglets contracted, but the increase in force generated by outer and inner hypoxic PASMCs (ranges 13-72 and 14-56 dynes) was less than by normal PASMCs (ranges 27-154 and 34-159 dynes, respectively; p < 0.05 for both). All hypoxic PASMCs were unresponsive to antagonist (sodium nitroprusside) stimulation, all normal PASMCs relaxed (range - 87 to - 494 dynes). Myosin heavy chain expression by both hypoxic PASMC phenotypes was less than normal (p < 0.05 for both), as was the activity of focal adhesion kinase, regulating contraction, in hypoxic inner PASMCs (p < 0.01). Chronic hypoxia resulted in the development of abnormal PASMC phenotypes, which in collagen constructs exhibited a reduction in contractile force and reactivity to agonists. Characterization of the mechanical response of spatially distinct cells and modification of their behaviour by hypoxia is critical for successful tissue engineering of major blood vessels. PMID:18038419

  8. Common cold

    MedlinePlus

    ... been tried for colds, such as vitamin C, zinc supplements, and echinacea. Talk to your health care ... nih.gov/pubmed/22962927 . Singh M, Das RR. Zinc for the common cold. Cochrane Database of Systematic ...

  9. Pandemic Swine-Origin H1N1 Influenza Virus Replicates to Higher Levels and Induces More Fever and Acute Inflammatory Cytokines in Cynomolgus versus Rhesus Monkeys and Can Replicate in Common Marmosets.

    PubMed

    Mooij, Petra; Koopman, Gerrit; Mortier, Daniëlla; van Heteren, Melanie; Oostermeijer, Herman; Fagrouch, Zahra; de Laat, Rudy; Kobinger, Gary; Li, Yan; Remarque, Edmond J; Kondova, Ivanela; Verschoor, Ernst J; Bogers, Willy M J M

    2015-01-01

    The close immunological and physiological resemblance with humans makes non-human primates a valuable model for studying influenza virus pathogenesis and immunity and vaccine efficacy against infection. Although both cynomolgus and rhesus macaques are frequently used in influenza virus research, a direct comparison of susceptibility to infection and disease has not yet been performed. In the current study a head-to-head comparison was made between these species, by using a recently described swine-origin pandemic H1N1 strain, A/Mexico/InDRE4487/2009. In comparison to rhesus macaques, cynomolgus macaques developed significantly higher levels of virus replication in the upper airways and in the lungs, involving both peak level and duration of virus production, as well as higher increases in body temperature. In contrast, clinical symptoms, including respiratory distress, were more easily observed in rhesus macaques. Expression of sialyl-α-2,6-Gal saccharides, the main receptor for human influenza A viruses, was 50 to 73 times more abundant in trachea and bronchus of cynomolgus macaques relative to rhesus macaques. The study also shows that common marmosets, a New World non-human primate species, are susceptible to infection with pandemic H1N1. The study results favor the cynomolgus macaque as model for pandemic H1N1 influenza virus research because of the more uniform and high levels of virus replication, as well as temperature increases, which may be due to a more abundant expression of the main human influenza virus receptor in the trachea and bronchi. PMID:25946071

  10. Pandemic Swine-Origin H1N1 Influenza Virus Replicates to Higher Levels and Induces More Fever and Acute Inflammatory Cytokines in Cynomolgus versus Rhesus Monkeys and Can Replicate in Common Marmosets

    PubMed Central

    Mooij, Petra; Koopman, Gerrit; Mortier, Daniëlla; van Heteren, Melanie; Oostermeijer, Herman; Fagrouch, Zahra; de Laat, Rudy; Kobinger, Gary; Li, Yan; Remarque, Edmond J.; Kondova, Ivanela; Verschoor, Ernst J.; Bogers, Willy M. J. M.

    2015-01-01

    The close immunological and physiological resemblance with humans makes non-human primates a valuable model for studying influenza virus pathogenesis and immunity and vaccine efficacy against infection. Although both cynomolgus and rhesus macaques are frequently used in influenza virus research, a direct comparison of susceptibility to infection and disease has not yet been performed. In the current study a head-to-head comparison was made between these species, by using a recently described swine-origin pandemic H1N1 strain, A/Mexico/InDRE4487/2009. In comparison to rhesus macaques, cynomolgus macaques developed significantly higher levels of virus replication in the upper airways and in the lungs, involving both peak level and duration of virus production, as well as higher increases in body temperature. In contrast, clinical symptoms, including respiratory distress, were more easily observed in rhesus macaques. Expression of sialyl-α-2,6-Gal saccharides, the main receptor for human influenza A viruses, was 50 to 73 times more abundant in trachea and bronchus of cynomolgus macaques relative to rhesus macaques. The study also shows that common marmosets, a New World non-human primate species, are susceptible to infection with pandemic H1N1. The study results favor the cynomolgus macaque as model for pandemic H1N1 influenza virus research because of the more uniform and high levels of virus replication, as well as temperature increases, which may be due to a more abundant expression of the main human influenza virus receptor in the trachea and bronchi. PMID:25946071

  11. Pandemic Swine-Origin H1N1 Influenza Virus Replicates to Higher Levels and Induces More Fever and Acute Inflammatory Cytokines in Cynomolgus versus Rhesus Monkeys and Can Replicate in Common Marmosets.

    PubMed

    Mooij, Petra; Koopman, Gerrit; Mortier, Daniëlla; van Heteren, Melanie; Oostermeijer, Herman; Fagrouch, Zahra; de Laat, Rudy; Kobinger, Gary; Li, Yan; Remarque, Edmond J; Kondova, Ivanela; Verschoor, Ernst J; Bogers, Willy M J M

    2015-01-01

    The close immunological and physiological resemblance with humans makes non-human primates a valuable model for studying influenza virus pathogenesis and immunity and vaccine efficacy against infection. Although both cynomolgus and rhesus macaques are frequently used in influenza virus research, a direct comparison of susceptibility to infection and disease has not yet been performed. In the current study a head-to-head comparison was made between these species, by using a recently described swine-origin pandemic H1N1 strain, A/Mexico/InDRE4487/2009. In comparison to rhesus macaques, cynomolgus macaques developed significantly higher levels of virus replication in the upper airways and in the lungs, involving both peak level and duration of virus production, as well as higher increases in body temperature. In contrast, clinical symptoms, including respiratory distress, were more easily observed in rhesus macaques. Expression of sialyl-α-2,6-Gal saccharides, the main receptor for human influenza A viruses, was 50 to 73 times more abundant in trachea and bronchus of cynomolgus macaques relative to rhesus macaques. The study also shows that common marmosets, a New World non-human primate species, are susceptible to infection with pandemic H1N1. The study results favor the cynomolgus macaque as model for pandemic H1N1 influenza virus research because of the more uniform and high levels of virus replication, as well as temperature increases, which may be due to a more abundant expression of the main human influenza virus receptor in the trachea and bronchi.

  12. Spatially-Heterodyned Holography

    DOEpatents

    Thomas, Clarence E [Knoxville, TN; Hanson, Gregory R [Clinton, TN

    2006-02-21

    A method of recording a spatially low-frequency heterodyne hologram, including spatially heterodyne fringes for Fourier analysis, includes: splitting a laser beam into a reference beam and an object beam; interacting the object beam with an object; focusing the reference beam and the object beam at a focal plane of a digital recorder to form a spatially low-frequency heterodyne hologram including spatially heterodyne fringes for Fourier analysis; digital recording the spatially low-frequency heterodyne hologram; Fourier transforming axes of the recorded spatially low-frequency heterodyne hologram including spatially heterodyne fringes in Fourier space to sit on top of a heterodyne carrier frequency defined by an angle between the reference beam and the object beam; cutting off signals around an origin; and performing an inverse Fourier transform.

  13. Comparison of spatial learning in the partially baited radial-arm maze task between commonly used rat strains: Wistar, Spargue-Dawley, Long-Evans, and outcrossed Wistar/Sprague-Dawley.

    PubMed

    Gökçek-Saraç, Çiğdem; Wesierska, Malgorzata; Jakubowska-Doğru, Ewa

    2015-03-01

    Strain-related differences in animals' cognitive ability affect the outcomes of experiments and may be responsible for discrepant results obtained by different research groups. Therefore, behavioral phenotyping of laboratory animals belonging to different strains is important. The aim of the present study was to compare the variation in allothetic visuospatial learning in most commonly used laboratory rat strains: inbred Wistar (W) and Sprague-Dawley (SD), outcrossed Wistar/Sprague-Dawley (W/SD), and outbred Long Evans (LE) rats. All rats were trained to the arbitrary performance criterion of 83 % correct responses in the partially baited 12-arm radial maze allowing for simultaneous evaluation of both working and reference memory. In the present study, testing albino versus pigmented and inbred versus outcrossed rats revealed significant strain-dependent differences with the inbred SD rats manifesting lower performance on all learning measures compared to other strains. On the other hand, the outcrossed W/SD rats showed a lower frequency of reference memory errors and faster rate of task acquisition compared to both LE and W rats, with W rats showing a lower frequency of working memory errors compared to other strains. In conclusion, albinism apparently did not reduce the animals' performance in the allothetic visuospatial learning task, while outcrossing improved the spatial learning. A differential effect of strain on the contribution of each error type to the animals' overall performance was observed. The strain-dependent differences were more pronounced between subpopulations of learning-deficient individuals ("poor" learners), and generally the reference memory errors contributed more to the final behavioral output than did the working memory errors. PMID:25537841

  14. Making the Common Good Common

    ERIC Educational Resources Information Center

    Chase, Barbara

    2011-01-01

    How are independent schools to be useful to the wider world? Beyond their common commitment to educate their students for meaningful lives in service of the greater good, can they educate a broader constituency and, thus, share their resources and skills more broadly? Their answers to this question will be shaped by their independence. Any…

  15. On the nature of origins of DNA replication in eukaryotes.

    PubMed

    Benbow, R M; Zhao, J; Larson, D D

    1992-10-01

    Chromosomal origins of DNA replication in higher eukaryotes differ significantly from those of E. coli (oriC) and the tumor virus, SV40 (ori sequence). Initiation events appear to occur throughout broad zones rather than at specific origin sequences. Analysis of four chromosomal origin regions reveals that they share common modular sequence elements. These include DNA unwinding elements, pyrimidine tracts that may serve as strong DNA polymerase-primase start sites, scaffold associated regions, transcriptional regulatory sequences, and, possibly, initiator protein binding sites and inherently destabilized regions. Based on the novel organization of chromosomal origin regions, we propose a model for initiation of DNA replication in higher eukaryotes. Unwinding of duplex DNA during initiation may be uncoupled, both temporally and spatially, from DNA synthesis, resulting in transient single-stranded intermediates that function in lieu of conventional replication forks during chromosomal DNA replication. DNA synthesis begins subsequently at multiple sites within the unwound regions rather than at specific origin sequences.

  16. Common hyperspectral image database design

    NASA Astrophysics Data System (ADS)

    Tian, Lixun; Liao, Ningfang; Chai, Ali

    2009-11-01

    This paper is to introduce Common hyperspectral image database with a demand-oriented Database design method (CHIDB), which comprehensively set ground-based spectra, standardized hyperspectral cube, spectral analysis together to meet some applications. The paper presents an integrated approach to retrieving spectral and spatial patterns from remotely sensed imagery using state-of-the-art data mining and advanced database technologies, some data mining ideas and functions were associated into CHIDB to make it more suitable to serve in agriculture, geological and environmental areas. A broad range of data from multiple regions of the electromagnetic spectrum is supported, including ultraviolet, visible, near-infrared, thermal infrared, and fluorescence. CHIDB is based on dotnet framework and designed by MVC architecture including five main functional modules: Data importer/exporter, Image/spectrum Viewer, Data Processor, Parameter Extractor, and On-line Analyzer. The original data were all stored in SQL server2008 for efficient search, query and update, and some advance Spectral image data Processing technology are used such as Parallel processing in C#; Finally an application case is presented in agricultural disease detecting area.

  17. SPATIALLY RESOLVED [Fe II] 1.64 {mu}m EMISSION IN NGC 5135: CLUES FOR UNDERSTANDING THE ORIGIN OF THE HARD X-RAYS IN LUMINOUS INFRARED GALAXIES

    SciTech Connect

    Colina, L.; Pereira-Santaella, M.; Alonso-Herrero, A.; Arribas, S.; Bedregal, A. G.

    2012-04-20

    Spatially resolved near-IR and X-ray imaging of the central region of the luminous infrared galaxy (LIRG) NGC 5135 is presented. The kinematical signatures of strong outflows are detected in the [Fe II] 1.64 {mu}m emission line in a compact region at 0.9 kpc from the nucleus. The derived mechanical energy release is consistent with a supernova rate of 0.05-0.1 yr{sup -1}. The apex of the outflowing gas spatially coincides with the strongest [Fe II] emission peak and with the dominant component of the extranuclear hard X-ray emission. All these features provide evidence for a plausible direct physical link between supernova-driven outflows and the hard X-ray emitting gas in an LIRG. This result is consistent with model predictions of starbursts concentrated in small volumes and with high thermalization efficiencies. A single high-mass X-ray binary (HMXB) as the major source of the hard X-ray emission, although not favored, cannot be ruled out. Outside the active galactic nucleus, the hard X-ray emission in NGC 5135 appears to be dominated by the hot interstellar medium produced by supernova explosions in a compact star-forming region, and not by the emission due to HMXBs. If this scenario is common to (ultra)luminous infrared galaxies, the hard X-rays would only trace the most compact ({<=}100 pc) regions with high supernova and star formation densities, therefore a lower limit to their integrated star formation. The star formation rate derived in NGC 5135 based on its hard X-ray luminosity is a factor of two and four lower than the values obtained from the 24 {mu}m and soft X-ray luminosities, respectively.

  18. Temperature Impacts the Development and Survival of Common Cutworm (Spodoptera litura): Simulation and Visualization of Potential Population Growth in India under Warmer Temperatures through Life Cycle Modelling and Spatial Mapping.

    PubMed

    Fand, Babasaheb B; Sul, Nitin T; Bal, Santanu K; Minhas, P S

    2015-01-01

    The common cutworm, Spodoptera litura, has become a major pest of soybean (Glycine max) throughout its Indian range. With a changing climate, there is the potential for this insect to become an increasingly severe pest in certain regions due to increased habitat suitability. To examine this possibility, we developed temperature-based phenology model for S. litura, by constructing thermal reaction norms for cohorts of single life stages, at both constant and fluctuating temperatures within the ecologically relevant range (15-38°C) for its development. Life table parameters were estimated stochastically using cohort updating and rate summation approach. The model was implemented in the geographic information system to examine the potential future pest status of S. litura using temperature change projections from SRES A1B climate change scenario for the year 2050. The changes were visualized by means of three spatial indices demonstrating the risks for establishment, number of generations per year and pest abundance according to the temperature conditions. The results revealed that the development rate as a function of temperature increased linearly for all the immature stages of S. litura until approximately 34-36°C, after which it became non-linear. The extreme temperature of 38°C was found lethal to larval and pupal stages of S. litura wherein no development to the next stage occurred. Females could lay no eggs at the extreme low (15°C) and high (> 35°C) test temperatures, demonstrating the importance of optimum temperature in determining the suitability of climate for the mating and reproduction in S. litura. The risk mapping predicts that due to temperature increase under future climate change, much of the soybean areas in Indian states like Madhya Pradesh, Maharashtra and Rajasthan, will become suitable for S. litura establishment and increased pest activity, indicating the expansion of the suitable and favourable areas over time. This has serious

  19. Temperature Impacts the Development and Survival of Common Cutworm (Spodoptera litura): Simulation and Visualization of Potential Population Growth in India under Warmer Temperatures through Life Cycle Modelling and Spatial Mapping

    PubMed Central

    Fand, Babasaheb B.; Sul, Nitin T.; Bal, Santanu K.; Minhas, P. S.

    2015-01-01

    The common cutworm, Spodoptera litura, has become a major pest of soybean (Glycine max) throughout its Indian range. With a changing climate, there is the potential for this insect to become an increasingly severe pest in certain regions due to increased habitat suitability. To examine this possibility, we developed temperature-based phenology model for S. litura, by constructing thermal reaction norms for cohorts of single life stages, at both constant and fluctuating temperatures within the ecologically relevant range (15–38°C) for its development. Life table parameters were estimated stochastically using cohort updating and rate summation approach. The model was implemented in the geographic information system to examine the potential future pest status of S. litura using temperature change projections from SRES A1B climate change scenario for the year 2050. The changes were visualized by means of three spatial indices demonstrating the risks for establishment, number of generations per year and pest abundance according to the temperature conditions. The results revealed that the development rate as a function of temperature increased linearly for all the immature stages of S. litura until approximately 34–36°C, after which it became non-linear. The extreme temperature of 38°C was found lethal to larval and pupal stages of S. litura wherein no development to the next stage occurred. Females could lay no eggs at the extreme low (15°C) and high (> 35°C) test temperatures, demonstrating the importance of optimum temperature in determining the suitability of climate for the mating and reproduction in S. litura. The risk mapping predicts that due to temperature increase under future climate change, much of the soybean areas in Indian states like Madhya Pradesh, Maharashtra and Rajasthan, will become suitable for S. litura establishment and increased pest activity, indicating the expansion of the suitable and favourable areas over time. This has serious

  20. Original Misunderstanding

    ERIC Educational Resources Information Center

    Holtzman, Alexander

    2009-01-01

    Humorist Josh Billings quipped, "About the most originality that any writer can hope to achieve honestly is to steal with good judgment." Billings was harsh in his view of originality, but his critique reveals a tension faced by students every time they write a history paper. Research is the essence of any history paper. Especially in high school,…

  1. The common ancestry of life

    PubMed Central

    2010-01-01

    Background It is common belief that all cellular life forms on earth have a common origin. This view is supported by the universality of the genetic code and the universal conservation of multiple genes, particularly those that encode key components of the translation system. A remarkable recent study claims to provide a formal, homology independent test of the Universal Common Ancestry hypothesis by comparing the ability of a common-ancestry model and a multiple-ancestry model to predict sequences of universally conserved proteins. Results We devised a computational experiment on a concatenated alignment of universally conserved proteins which shows that the purported demonstration of the universal common ancestry is a trivial consequence of significant sequence similarity between the analyzed proteins. The nature and origin of this similarity are irrelevant for the prediction of "common ancestry" of by the model-comparison approach. Thus, homology (common origin) of the compared proteins remains an inference from sequence similarity rather than an independent property demonstrated by the likelihood analysis. Conclusion A formal demonstration of the Universal Common Ancestry hypothesis has not been achieved and is unlikely to be feasible in principle. Nevertheless, the evidence in support of this hypothesis provided by comparative genomics is overwhelming. Reviewers this article was reviewed by William Martin, Ivan Iossifov (nominated by Andrey Rzhetsky) and Arcady Mushegian. For the complete reviews, see the Reviewers' Report section. PMID:21087490

  2. Enracinement or the earth, the originary ark, does not move: on the phenomenological (historical and ontogenetic) origin of common and scientific sense and the genetic method of teaching (for) understanding

    NASA Astrophysics Data System (ADS)

    Roth, Wolff-Michael

    2015-06-01

    For many students, the experience with science tends to be alienating and uprooting. In this study, I take up Simone Weil's concepts of enracinement (rooting) and déracinement (uprooting) to theorize the root of this alienation, the confrontation between children's familiarity with the world and unfamiliar/strange scientific conceptions. I build on the works of the phenomenological philosopher Edmund Husserl and the German physics educator Martin Wagenschein (who directly refers to Weil's concepts) to make a case for the rooting function of original/originary experiences and the genetic method to science teaching. The genetic approach allows students to retain their foundational familiarity with the world and their descriptions thereof all the while evolving other (more scientific) ways of explaining natural phenomena.

  3. The impact of spatial scales and spatial smoothing on the outcome of bayesian spatial model.

    PubMed

    Kang, Su Yun; McGree, James; Mengersen, Kerrie

    2013-01-01

    Discretization of a geographical region is quite common in spatial analysis. There have been few studies into the impact of different geographical scales on the outcome of spatial models for different spatial patterns. This study aims to investigate the impact of spatial scales and spatial smoothing on the outcomes of modelling spatial point-based data. Given a spatial point-based dataset (such as occurrence of a disease), we study the geographical variation of residual disease risk using regular grid cells. The individual disease risk is modelled using a logistic model with the inclusion of spatially unstructured and/or spatially structured random effects. Three spatial smoothness priors for the spatially structured component are employed in modelling, namely an intrinsic Gaussian Markov random field, a second-order random walk on a lattice, and a Gaussian field with Matérn correlation function. We investigate how changes in grid cell size affect model outcomes under different spatial structures and different smoothness priors for the spatial component. A realistic example (the Humberside data) is analyzed and a simulation study is described. Bayesian computation is carried out using an integrated nested Laplace approximation. The results suggest that the performance and predictive capacity of the spatial models improve as the grid cell size decreases for certain spatial structures. It also appears that different spatial smoothness priors should be applied for different patterns of point data. PMID:24146799

  4. The Space in Spatial Language

    ERIC Educational Resources Information Center

    Carlson, Laura A.; Van Deman, Shannon R.

    2004-01-01

    Projective spatial terms such as ''below'' specify the location of one object by indicating its spatial relation with respect to a reference object. These relations are defined via a reference frame that consists of a number of parameters (orientation, direction, origin, and distance) whose settings configure the space surrounding the reference…

  5. Spatial compression algorithm for the analysis of very large multivariate images

    DOEpatents

    Keenan, Michael R.

    2008-07-15

    A method for spatially compressing data sets enables the efficient analysis of very large multivariate images. The spatial compression algorithms use a wavelet transformation to map an image into a compressed image containing a smaller number of pixels that retain the original image's information content. Image analysis can then be performed on a compressed data matrix consisting of a reduced number of significant wavelet coefficients. Furthermore, a block algorithm can be used for performing common operations more efficiently. The spatial compression algorithms can be combined with spectral compression algorithms to provide further computational efficiencies.

  6. Common HEP UNIX Environment

    NASA Astrophysics Data System (ADS)

    Taddei, Arnaud

    After it had been decided to design a common user environment for UNIX platforms among HEP laboratories, a joint project between DESY and CERN had been started. The project consists in 2 phases: 1. Provide a common user environment at shell level, 2. Provide a common user environment at graphical level (X11). Phase 1 is in production at DESY and at CERN as well as at PISA and RAL. It has been developed around the scripts originally designed at DESY Zeuthen improved and extended with a 2 months project at CERN with a contribution from DESY Hamburg. It consists of a set of files which are customizing the environment for the 6 main shells (sh, csh, ksh, bash, tcsh, zsh) on the main platforms (AIX, HP-UX, IRIX, SunOS, Solaris 2, OSF/1, ULTRIX, etc.) and it is divided at several "sociological" levels: HEP, site, machine, cluster, group of users and user with some levels which are optional. The second phase is under design and a first proposal has been published. A first version of the phase 2 exists already for AIX and Solaris, and it should be available for all other platforms, by the time of the conference. This is a major collective work between several HEP laboratories involved in the HEPiX-scripts and HEPiX-X11 working-groups.

  7. Eukaryotic origins.

    PubMed

    Lake, James A

    2015-09-26

    The origin of the eukaryotes is a fundamental scientific question that for over 30 years has generated a spirited debate between the competing Archaea (or three domains) tree and the eocyte tree. As eukaryotes ourselves, humans have a personal interest in our origins. Eukaryotes contain their defining organelle, the nucleus, after which they are named. They have a complex evolutionary history, over time acquiring multiple organelles, including mitochondria, chloroplasts, smooth and rough endoplasmic reticula, and other organelles all of which may hint at their origins. It is the evolutionary history of the nucleus and their other organelles that have intrigued molecular evolutionists, myself included, for the past 30 years and which continues to hold our interest as increasingly compelling evidence favours the eocyte tree. As with any orthodoxy, it takes time to embrace new concepts and techniques.

  8. Eukaryotic origins

    PubMed Central

    Lake, James A.

    2015-01-01

    The origin of the eukaryotes is a fundamental scientific question that for over 30 years has generated a spirited debate between the competing Archaea (or three domains) tree and the eocyte tree. As eukaryotes ourselves, humans have a personal interest in our origins. Eukaryotes contain their defining organelle, the nucleus, after which they are named. They have a complex evolutionary history, over time acquiring multiple organelles, including mitochondria, chloroplasts, smooth and rough endoplasmic reticula, and other organelles all of which may hint at their origins. It is the evolutionary history of the nucleus and their other organelles that have intrigued molecular evolutionists, myself included, for the past 30 years and which continues to hold our interest as increasingly compelling evidence favours the eocyte tree. As with any orthodoxy, it takes time to embrace new concepts and techniques. PMID:26323753

  9. Spatial Data Analysis.

    PubMed

    Banerjee, Sudipto

    2016-01-01

    With increasing accessibility to geographic information systems (GIS) software, statisticians and data analysts routinely encounter scientific data sets with geocoded locations. This has generated considerable interest in statistical modeling for location-referenced spatial data. In public health, spatial data routinely arise as aggregates over regions, such as counts or rates over counties, census tracts, or some other administrative delineation. Such data are often referred to as areal data. This review article provides a brief overview of statistical models that account for spatial dependence in areal data. It does so in the context of two applications: disease mapping and spatial survival analysis. Disease maps are used to highlight geographic areas with high and low prevalence, incidence, or mortality rates of a specific disease and the variability of such rates over a spatial domain. They can also be used to detect hot spots or spatial clusters that may arise owing to common environmental, demographic, or cultural effects shared by neighboring regions. Spatial survival analysis refers to the modeling and analysis for geographically referenced time-to-event data, where a subject is followed up to an event (e.g., death or onset of a disease) or is censored, whichever comes first. Spatial survival analysis is used to analyze clustered survival data when the clustering arises from geographical regions or strata. Illustrations are provided in these application domains. PMID:26789381

  10. Spatial Data Analysis.

    PubMed

    Banerjee, Sudipto

    2016-01-01

    With increasing accessibility to geographic information systems (GIS) software, statisticians and data analysts routinely encounter scientific data sets with geocoded locations. This has generated considerable interest in statistical modeling for location-referenced spatial data. In public health, spatial data routinely arise as aggregates over regions, such as counts or rates over counties, census tracts, or some other administrative delineation. Such data are often referred to as areal data. This review article provides a brief overview of statistical models that account for spatial dependence in areal data. It does so in the context of two applications: disease mapping and spatial survival analysis. Disease maps are used to highlight geographic areas with high and low prevalence, incidence, or mortality rates of a specific disease and the variability of such rates over a spatial domain. They can also be used to detect hot spots or spatial clusters that may arise owing to common environmental, demographic, or cultural effects shared by neighboring regions. Spatial survival analysis refers to the modeling and analysis for geographically referenced time-to-event data, where a subject is followed up to an event (e.g., death or onset of a disease) or is censored, whichever comes first. Spatial survival analysis is used to analyze clustered survival data when the clustering arises from geographical regions or strata. Illustrations are provided in these application domains.

  11. Original Version

    Cancer.gov

    The EPEC-O (Education in Palliative and End-of-Life Care for Oncology) Self-Study Original Version is a free comprehensive multimedia curricula for health professionals caring for persons with cancer and their families. The curricula is available as an online Self-Study Section and as a CD-ROM you can order.

  12. Spatial cognition

    NASA Technical Reports Server (NTRS)

    Kaiser, Mary Kister; Remington, Roger

    1988-01-01

    Spatial cognition is the ability to reason about geometric relationships in the real (or a metaphorical) world based on one or more internal representations of those relationships. The study of spatial cognition is concerned with the representation of spatial knowledge, and our ability to manipulate these representations to solve spatial problems. Spatial cognition is utilized most critically when direct perceptual cues are absent or impoverished. Examples are provided of how human spatial cognitive abilities impact on three areas of space station operator performance: orientation, path planning, and data base management. A videotape provides demonstrations of relevant phenomena (e.g., the importance of orientation for recognition of complex, configural forms). The presentation is represented by abstract and overhead visuals only.

  13. Planetary Spatial Analyst

    NASA Technical Reports Server (NTRS)

    Keely, Leslie

    2008-01-01

    This is a status report for the project entitled Planetary Spatial Analyst (PSA). This report covers activities from the project inception on October 1, 2007 to June 1, 2008. Originally a three year proposal, PSA was awarded funding for one year and required a revised work statement and budget. At the time of this writing the project is well on track both for completion of work as well as budget. The revised project focused on two objectives: build a solid connection with the target community and implement a prototype software application that provides 3D visualization and spatial analysis technologies for that community. Progress has been made for both of these objectives.

  14. Spatial Displays and Spatial Instruments

    NASA Technical Reports Server (NTRS)

    Ellis, Stephen R. (Editor); Kaiser, Mary K. (Editor); Grunwald, Arthur J. (Editor)

    1989-01-01

    The conference proceedings topics are divided into two main areas: (1) issues of spatial and picture perception raised by graphical electronic displays of spatial information; and (2) design questions raised by the practical experience of designers actually defining new spatial instruments for use in new aircraft and spacecraft. Each topic is considered from both a theoretical and an applied direction. Emphasis is placed on discussion of phenomena and determination of design principles.

  15. Controversy on chloroplast origins.

    PubMed

    Lockhart, P J; Penny, D; Hendy, M D; Howe, C J; Beanland, T J; Larkum, A W

    1992-04-20

    Controversy exists over the origins of photosynthetic organelles in that contradictory trees arise from different sequence, biochemical and ultrastructural data sets. We propose a testable hypothesis which explains this inconsistency as a result of the differing GC contents of sequences. We report that current methods of tree reconstruction tend to group sequences with similar GC contents irrespective of whether the similar GC content is due to common ancestry or is independently acquired. Nuclear encoded sequences (high GC) give different trees from chloroplast encoded sequences (low GC). We find that current data is consistent with the hypothesis of multiple origins for photosynthetic organelles and single origins for each type of light harvesting complex. PMID:1568469

  16. Common Cause Failures and Ultra Reliability

    NASA Technical Reports Server (NTRS)

    Jones, Harry W.

    2012-01-01

    A common cause failure occurs when several failures have the same origin. Common cause failures are either common event failures, where the cause is a single external event, or common mode failures, where two systems fail in the same way for the same reason. Common mode failures can occur at different times because of a design defect or a repeated external event. Common event failures reduce the reliability of on-line redundant systems but not of systems using off-line spare parts. Common mode failures reduce the dependability of systems using off-line spare parts and on-line redundancy.

  17. Spatial clustering of tuning in mouse primary visual cortex.

    PubMed

    Ringach, Dario L; Mineault, Patrick J; Tring, Elaine; Olivas, Nicholas D; Garcia-Junco-Clemente, Pablo; Trachtenberg, Joshua T

    2016-01-01

    The primary visual cortex of higher mammals is organized into two-dimensional maps, where the preference of cells for stimulus parameters is arranged regularly on the cortical surface. In contrast, the preference of neurons in the rodent appears to be arranged randomly, in what is termed a salt-and-pepper map. Here we revisited the spatial organization of receptive fields in mouse primary visual cortex by measuring the tuning of pyramidal neurons in the joint orientation and spatial frequency domain. We found that the similarity of tuning decreases as a function of cortical distance, revealing a weak but statistically significant spatial clustering. Clustering was also observed across different cortical depths, consistent with a columnar organization. Thus, the mouse visual cortex is not strictly a salt-and-pepper map. At least on a local scale, it resembles a degraded version of the organization seen in higher mammals, hinting at a possible common origin. PMID:27481398

  18. Spatial clustering of tuning in mouse primary visual cortex

    PubMed Central

    Ringach, Dario L.; Mineault, Patrick J.; Tring, Elaine; Olivas, Nicholas D.; Garcia-Junco-Clemente, Pablo; Trachtenberg, Joshua T.

    2016-01-01

    The primary visual cortex of higher mammals is organized into two-dimensional maps, where the preference of cells for stimulus parameters is arranged regularly on the cortical surface. In contrast, the preference of neurons in the rodent appears to be arranged randomly, in what is termed a salt-and-pepper map. Here we revisited the spatial organization of receptive fields in mouse primary visual cortex by measuring the tuning of pyramidal neurons in the joint orientation and spatial frequency domain. We found that the similarity of tuning decreases as a function of cortical distance, revealing a weak but statistically significant spatial clustering. Clustering was also observed across different cortical depths, consistent with a columnar organization. Thus, the mouse visual cortex is not strictly a salt-and-pepper map. At least on a local scale, it resembles a degraded version of the organization seen in higher mammals, hinting at a possible common origin. PMID:27481398

  19. Generation of spatial filters by ICA for detecting motor-related oscillatory EEG.

    PubMed

    Kanoh, Shin'ichiro; Miyamoto, Ko-ichiro; Yoshinobu, Tatsuo

    2012-01-01

    To detect the imagined limb movement from EEG for the use in BCI, the increase (ERS) and decrease (ERD) of the band power of the EEG originated from the sensorimotor cortex are commonly used. A spatial filter using neighboring channels is generally applied to the measured EEG for detecting such brain activity related to the motor imagery. However, the configuration and location of the spatial filter have been selected by the empirical method on trial-and-error basis. In this study, we recorded the EEG during motor imagery of left hand, right hand and feet from five subjects, and the ICA (independent component analysis) was applied to discover the spatial filters for extracting event-related EEG components of the motor imagery. It was suggested that the application of ICA might offer the experimenters appropriate local spatial filters, or at least, the "initial guess" for designing or selecting custom local spatial filters. PMID:23366237

  20. The origin of lunar concentric craters

    NASA Astrophysics Data System (ADS)

    Trang, David; Gillis-Davis, Jeffrey J.; Hawke, B. Ray

    2016-11-01

    Lunar concentric craters are a unique class of impact craters because the interior of the craters contains a concentric ridge, but their formation mechanism is unknown. In order to determine the origin of concentric craters, we examined multiple working hypotheses, which include eight impact-related and endogenic processes. We analyzed data sets that originated from instruments onboard Clementine, Kaguya, and the Lunar Reconnaissance Orbiter to characterize the morphology, spatial distribution, composition, and absolute model ages of 114 concentric craters. Concentric craters contain five key properties: (1) a concentric ridge, (2) anomalously shallow floors, (3) their occurrence is concentrated near mare margins and in mare pond regions (4) the concentric ridge composition is similar to the surrounding area and (5) concentric crater ages are Eratosthenian and older. These five key properties served as constraints for testing impact-related and endogenic mechanisms of formation. We find that most impact-related hypotheses cannot explain the spatial and age distribution of concentric craters. As for endogenic hypotheses, we deduce that igneous intrusions are the likely mechanism that formed concentric craters because of the close relationship between concentric craters and floor-fractured craters and the concentration of both features near mare-highland boundaries and in mare ponds. Furthermore, we observe that floor-fractured craters are common at crater diameters > 15 km, whereas concentric craters are common at crater diameters < 15 km. We suggest that igneous intrusions underneath small craters (<15 km) are likely to form concentric craters, whereas intrusions under large craters (>15 km) produce floor-fractured craters.

  1. No Common Opinion on the Common Core

    ERIC Educational Resources Information Center

    Henderson, Michael B.; Peterson, Paul E.; West, Martin R.

    2015-01-01

    According to the three authors of this article, the 2014 "EdNext" poll yields four especially important new findings: (1) Opinion with respect to the Common Core has yet to coalesce. The idea of a common set of standards across the country has wide appeal, and the Common Core itself still commands the support of a majority of the public.…

  2. Sex Differences in Spatial Ability: A Critique.

    ERIC Educational Resources Information Center

    Clear, Sarah-Jane

    1978-01-01

    Explores (1) problems of the validity of tests of spatial ability, and (2) problems of the recessive gene influence theory of the origin of sex differences in spatial ability. Studies of cognitive strategies in spatial problem solving are suggested as a way to further investigate recessive gene influence. (Author/RH)

  3. Generating original ideas: The neural underpinning of originality.

    PubMed

    Mayseless, Naama; Eran, Ayelet; Shamay-Tsoory, Simone G

    2015-08-01

    One of the key aspects of creativity is the ability to produce original ideas. Originality is defined in terms of the novelty and rarity of an idea and is measured by the infrequency of the idea compared to other ideas. In the current study we focused on divergent thinking (DT) - the ability to produce many alternate ideas - and assessed the neural pathways associated with originality. Considering that generation of original ideas involves both the ability to generate new associations and the ability to overcome automatic common responses, we hypothesized that originality would be associated with activations in regions related to associative thinking, including areas of the default mode network (DMN) such as medial prefrontal areas, as well as with areas involved in cognitive control and inhibition. Thirty participants were scanned while performing a DT task that required the generation of original uses for common objects. The results indicate that the ability to produce original ideas is mediated by activity in several regions that are part of the DMN including the medial prefrontal cortex (mPFC) and the posterior cingulate cortex (PCC). Furthermore, individuals who are more original exhibited enhanced activation in the ventral anterior cingulate cortex (vACC), which was also positively coupled with activity in the left occipital-temporal area. These results are in line with the dual model of creativity, according to which original ideas are a product of the interaction between a system that generates ideas and a control system that evaluates these ideas. PMID:26003860

  4. Developmental Origins of Common Disease: Epigenetic Contributions to Obesity

    PubMed Central

    Kappil, Maya; Wright, Robert O.; Sanders, Alison P.

    2016-01-01

    The perinatal period is a window of susceptibility for later life disease. Recent epigenetic findings are beginning to increase our understanding of the molecular mechanisms that may contribute to the programming of obesity. This review summarizes recent evidence that supports the role of epigenetically mediated early life programming in the later onset of obesity. Establishing such links between environmental exposures and modifiable molecular changes ultimately holds promise to inform interventional efforts toward alleviating the environmentally mediated onset of obesity. PMID:27216778

  5. Comparing Common Origins: Using Biotechnology To Teach Evolution.

    ERIC Educational Resources Information Center

    McLaughlin, John; Glasson, George

    2001-01-01

    Presents an innovative, inquiry-oriented lesson plan for using biotechnology to teach evolution. Using acrylamide gel electrophoresis, students learn how to isolate and compare different proteins from the muscle tissue of readily available seafood specimens to determine phylogenetic relationships. Uses a 5E (engagement, exploration, explanation,…

  6. Correlated Raman micro-spectroscopy and scanning electron microscopy analyses of flame retardants in environmental samples: a micro-analytical tool for probing chemical composition, origin and spatial distribution.

    PubMed

    Ghosal, Sutapa; Wagner, Jeff

    2013-07-01

    We present correlated application of two micro-analytical techniques: scanning electron microscopy/energy dispersive X-ray spectroscopy (SEM/EDS) and Raman micro-spectroscopy (RMS) for the non-invasive characterization and molecular identification of flame retardants (FRs) in environmental dusts and consumer products. The SEM/EDS-RMS technique offers correlated, morphological, molecular, spatial distribution and semi-quantitative elemental concentration information at the individual particle level with micrometer spatial resolution and minimal sample preparation. The presented methodology uses SEM/EDS analyses for rapid detection of particles containing FR specific elements as potential indicators of FR presence in a sample followed by correlated RMS analyses of the same particles for characterization of the FR sub-regions and surrounding matrices. The spatially resolved characterization enabled by this approach provides insights into the distributional heterogeneity as well as potential transfer and exposure mechanisms for FRs in the environment that is typically not available through traditional FR analysis. We have used this methodology to reveal a heterogeneous distribution of highly concentrated deca-BDE particles in environmental dust, sometimes in association with identifiable consumer materials. The observed coexistence of deca-BDE with consumer material in dust is strongly indicative of its release into the environment via weathering/abrasion of consumer products. Ingestion of such enriched FR particles in dust represents a potential for instantaneous exposure to high FR concentrations. Therefore, correlated SEM/RMS analysis offers a novel investigative tool for addressing an area of important environmental concern.

  7. Threads of common knowledge.

    PubMed

    Icamina, P

    1993-04-01

    Indigenous knowledge is examined as it is affected by development and scientific exploration. The indigenous culture of shamanism, which originated in northern and southeast Asia, is a "political and religious technique for managing societies through rituals, myths, and world views." There is respect for the natural environment and community life as a social common good. This world view is still practiced by many in Latin America and in Colombia specifically. Colombian shamanism has an environmental accounting system, but the Brazilian government has established its own system of land tenure and political representation which does not adequately represent shamanism. In 1992 a conference was held in the Philippines by the International Institute for Rural Reconstruction and IDRC on sustainable development and indigenous knowledge. The link between the two is necessary. Unfortunately, there are already examples in the Philippines of loss of traditional crop diversity after the introduction of modern farming techniques and new crop varieties. An attempt was made to collect species, but without proper identification. Opposition was expressed to the preservation of wilderness preserves; the desire was to allow indigenous people to maintain their homeland and use their time-tested sustainable resource management strategies. Property rights were also discussed during the conference. Of particular concern was the protection of knowledge rights about biological diversity or pharmaceutical properties of indigenous plant species. The original owners and keepers of the knowledge must retain access and control. The research gaps were identified and found to be expansive. Reference was made to a study of Mexican Indian children who knew 138 plant species while non-Indian children knew only 37. Sometimes there is conflict of interest where foresters prefer timber forests and farmers desire fuelwood supplies and fodder and grazing land, which is provided by shrubland. Information

  8. Threads of common knowledge.

    PubMed

    Icamina, P

    1993-04-01

    Indigenous knowledge is examined as it is affected by development and scientific exploration. The indigenous culture of shamanism, which originated in northern and southeast Asia, is a "political and religious technique for managing societies through rituals, myths, and world views." There is respect for the natural environment and community life as a social common good. This world view is still practiced by many in Latin America and in Colombia specifically. Colombian shamanism has an environmental accounting system, but the Brazilian government has established its own system of land tenure and political representation which does not adequately represent shamanism. In 1992 a conference was held in the Philippines by the International Institute for Rural Reconstruction and IDRC on sustainable development and indigenous knowledge. The link between the two is necessary. Unfortunately, there are already examples in the Philippines of loss of traditional crop diversity after the introduction of modern farming techniques and new crop varieties. An attempt was made to collect species, but without proper identification. Opposition was expressed to the preservation of wilderness preserves; the desire was to allow indigenous people to maintain their homeland and use their time-tested sustainable resource management strategies. Property rights were also discussed during the conference. Of particular concern was the protection of knowledge rights about biological diversity or pharmaceutical properties of indigenous plant species. The original owners and keepers of the knowledge must retain access and control. The research gaps were identified and found to be expansive. Reference was made to a study of Mexican Indian children who knew 138 plant species while non-Indian children knew only 37. Sometimes there is conflict of interest where foresters prefer timber forests and farmers desire fuelwood supplies and fodder and grazing land, which is provided by shrubland. Information

  9. ALGORITHM DEVELOPMENT FOR SPATIAL OPERATORS.

    USGS Publications Warehouse

    Claire, Robert W.

    1984-01-01

    An approach is given that develops spatial operators about the basic geometric elements common to spatial data structures. In this fashion, a single set of spatial operators may be accessed by any system that reduces its operands to such basic generic representations. Algorithms based on this premise have been formulated to perform operations such as separation, overlap, and intersection. Moreover, this generic approach is well suited for algorithms that exploit concurrent properties of spatial operators. The results may provide a framework for a geometry engine to support fundamental manipulations within a geographic information system.

  10. Common Cause Failure Modeling

    NASA Technical Reports Server (NTRS)

    Hark, Frank; Britton, Paul; Ring, Robert; Novack, Steven

    2015-01-01

    Space Launch System (SLS) Agenda: Objective; Key Definitions; Calculating Common Cause; Examples; Defense against Common Cause; Impact of varied Common Cause Failure (CCF) and abortability; Response Surface for various CCF Beta; Takeaways.

  11. The origin of life

    NASA Astrophysics Data System (ADS)

    McClendon, John H.

    1999-07-01

    Microfossil finds have been firmly established at about 3.5 Ga (giga annee=10 9 years), but no rocks older than about 4.0 Ga have been demonstrated, leaving the history of the first 0.6 Ga missing. This gap has been filled by models of the solar system. The origin of the ocean, atmosphere, and much crustal material apparently lies in a heavy rain of comets, subsequent to the catastrophic Moon-forming event. The earliest microfossils are those of the Apex chert in Australia, about 3.5 Ga old. `Prebiotic' simulations of possible biochemistry have made some progress in recent years, but many obstacles remain, and there is no agreement as to the course of development. The `ribose nucleic acid (RNA) World', aboriginal `clay genes', and catalysis on iron-sulfide precipitates are not ruled out. The search for the `last common ancestor' has reached a point between the Bacteria and the Archaea. It is possible that this organism may have been a thermophile, similar to many modern hot spring organisms. But it is likely to have been an autotroph, and a late development after the true origin of life. Even more speculative are suggestions about the origins of metabolic sequences, in particular the origin of the genetic code. Since all modern organisms share this code (and many other things), there had to be a long history of development during the blank period of Earth history.

  12. Spatial vulnerability assessments by regression kriging

    NASA Astrophysics Data System (ADS)

    Pásztor, László; Laborczi, Annamária; Takács, Katalin; Szatmári, Gábor

    2016-04-01

    Two fairly different complex environmental phenomena, causing natural hazard were mapped based on a combined spatial inference approach. The behaviour is related to various environmental factors and the applied approach enables the inclusion of several, spatially exhaustive auxiliary variables that are available for mapping. Inland excess water (IEW) is an interrelated natural and human induced phenomenon causes several problems in the flat-land regions of Hungary, which cover nearly half of the country. The term 'inland excess water' refers to the occurrence of inundations outside the flood levee that originate from sources differing from flood overflow, it is surplus surface water forming due to the lack of runoff, insufficient absorption capability of soil or the upwelling of groundwater. There is a multiplicity of definitions, which indicate the complexity of processes that govern this phenomenon. Most of the definitions have a common part, namely, that inland excess water is temporary water inundation that occurs in flat-lands due to both precipitation and groundwater emerging on the surface as substantial sources. Radon gas is produced in the radioactive decay chain of uranium, which is an element that is naturally present in soils. Radon is transported mainly by diffusion and convection mechanisms through the soil depending mainly on soil physical and meteorological parameters and can enter and accumulate in the buildings. Health risk originating from indoor radon concentration attributed to natural factors is characterized by geogenic radon potential (GRP). In addition to geology and meteorology, physical soil properties play significant role in the determination of GRP. Identification of areas with high risk requires spatial modelling, that is mapping of specific natural hazards. In both cases external environmental factors determine the behaviour of the target process (occurrence/frequncy of IEW and grade of GRP respectively). Spatial auxiliary

  13. Common Career Technical Core: Common Standards, Common Vision for CTE

    ERIC Educational Resources Information Center

    Green, Kimberly

    2012-01-01

    This article provides an overview of the National Association of State Directors of Career Technical Education Consortium's (NASDCTEc) Common Career Technical Core (CCTC), a state-led initiative that was created to ensure that career and technical education (CTE) programs are consistent and high quality across the United States. Forty-two states,…

  14. HIV-1 and microvesicles from T cells share a common glycome, arguing for a common origin.

    PubMed

    Krishnamoorthy, Lakshmi; Bess, Julian W; Preston, Alex B; Nagashima, Kunio; Mahal, Lara K

    2009-04-01

    HIV-1 is a master at deceiving the immune system and usurping host biosynthetic machinery. Although HIV-1 is coated with host-derived glycoproteins, only glycosylation of viral gp120 has been described. Here we use lectin microarray technology to analyze the glycome of intact HIV-1 virions. We show that the glycan coat of human T cell line-derived HIV-1 matches that of native immunomodulatory microvesicles. The carbohydrate composition of both virus and microvesicles is cell-line dependent, which suggests a mechanism to rapidly camouflage the virus within the host. In addition, binding of both virus and microvesicles to antiviral lectins is enriched over the host cell, raising concern about targeting these glycans for therapeutics. This work also sheds light on the binding of HIV-1 to galectin-1, an important human immune lectin. Overall, our work strongly supports the theory that HIV-1 co-opts the exocytic pathway of microvesicles, thus potentially explaining why eliciting a protective antiviral immune response is difficult.

  15. Multiple order common path spectrometer

    NASA Technical Reports Server (NTRS)

    Newbury, Amy B. (Inventor)

    2010-01-01

    The present invention relates to a dispersive spectrometer. The spectrometer allows detection of multiple orders of light on a single focal plane array by splitting the orders spatially using a dichroic assembly. A conventional dispersion mechanism such as a defraction grating disperses the light spectrally. As a result, multiple wavelength orders can be imaged on a single focal plane array of limited spectral extent, doubling (or more) the number of spectral channels as compared to a conventional spectrometer. In addition, this is achieved in a common path device.

  16. Malignant chondroblastoma of extraskeletal origin

    PubMed Central

    Duttaluri, Ramu; Sultanpurkar, Guru Prasad; Raorane, Harshvardhan; Vikram, Harsha

    2016-01-01

    Chondroblastoma is a rare benign neoplasm of cartilaginous origin. It typically arises in the epiphysis of a long bone. They occur mostly in the second decade of life and is more common in males. Extraskeletal origin of chondroblastoma is a rarity and virulent behavior by its local aggressive nature or metastasis is reported in very few cases. We hereby, present a case of chondroblastoma in the left popliteal fossa first of its kind in a 62-year-old female, primary tumor extraskeletal in origin which turned locally aggressive and eventually metastasized to lungs. The patient is now on palliative therapy. PMID:27127749

  17. Malignant chondroblastoma of extraskeletal origin.

    PubMed

    Duttaluri, Ramu; Sultanpurkar, Guru Prasad; Raorane, Harshvardhan; Vikram, Harsha

    2016-01-01

    Chondroblastoma is a rare benign neoplasm of cartilaginous origin. It typically arises in the epiphysis of a long bone. They occur mostly in the second decade of life and is more common in males. Extraskeletal origin of chondroblastoma is a rarity and virulent behavior by its local aggressive nature or metastasis is reported in very few cases. We hereby, present a case of chondroblastoma in the left popliteal fossa first of its kind in a 62-year-old female, primary tumor extraskeletal in origin which turned locally aggressive and eventually metastasized to lungs. The patient is now on palliative therapy.

  18. Malignant chondroblastoma of extraskeletal origin.

    PubMed

    Duttaluri, Ramu; Sultanpurkar, Guru Prasad; Raorane, Harshvardhan; Vikram, Harsha

    2016-01-01

    Chondroblastoma is a rare benign neoplasm of cartilaginous origin. It typically arises in the epiphysis of a long bone. They occur mostly in the second decade of life and is more common in males. Extraskeletal origin of chondroblastoma is a rarity and virulent behavior by its local aggressive nature or metastasis is reported in very few cases. We hereby, present a case of chondroblastoma in the left popliteal fossa first of its kind in a 62-year-old female, primary tumor extraskeletal in origin which turned locally aggressive and eventually metastasized to lungs. The patient is now on palliative therapy. PMID:27127749

  19. A review of lateralization of spatial functioning in nonhuman primates.

    PubMed

    Oleksiak, Anna; Postma, Albert; van der Ham, Ineke J M; Klink, P Christiaan; van Wezel, Richard J A

    2011-06-24

    The majority of research on functional cerebral lateralization in primates revolves around vocal abilities, addressing the evolutionary origin of the human language faculty and its predominance in the left hemisphere of the brain. Right hemisphere specialization in spatial cognition is commonly reported in humans. This functional asymmetry is especially evident in the context of the unilateral neglect, a deficit in attention to and awareness of one side of space, that more frequently occurs after right-side rather than left-side brain damage. Since most of the research efforts are concentrated on vocalization in primates, much less is known about the presence or absence of spatial functions lateralization. Obtaining this knowledge can provide insight into the evolutionary aspect of the functionally lateralized brain of Homo sapiens and deliver refinement and validation of the nonhuman primate unilateral neglect model. This paper reviews the literature on functional brain asymmetries in processing spatial information, limiting the search to nonhuman primates, and concludes there is no clear evidence that monkeys process spatial information with different efficiency in the two hemispheres. We suggest that lateralization of spatial cognition in humans represents a relatively new feature on the evolutionary time scale, possibly developed as a by-product of the left hemisphere intrusion of language competence. Further, we argue that the monkey model of hemispatial neglect requires reconsideration. PMID:21059373

  20. Spatial patterns and ratios of ¹³⁷Cs, ⁹⁰Sr, and Pu isotopes in the top layer of undisturbed meadow soils as indicators for contamination origin.

    PubMed

    Lukšienė, Benedikta; Puzas, Andrius; Remeikis, Vidmantas; Druteikienė, Rūta; Gudelis, Arūnas; Gvozdaitė, Rasa; Buivydas, Šarūnas; Davidonis, Rimantas; Kandrotas, Gintautas

    2015-05-01

    Spatial distribution of activity concentrations of (137)Cs, (90)Sr, and (239,240)Pu in the top layer of undisturbed meadow soils was compared between two regional transects across Lithuania: one in the SW region, more affected by the Chernobyl radioactive fallout, and the other in the NE region. Radiochemical, γ-, α-, β-, and mass spectrometric methods were used to determine the radionuclide activity. Our results validate that higher activity concentrations in the top soil layer were present in the SW region, despite the fact that sampling was performed after 22 years of the Chernobyl Nuclear Power Plant (NPP) accident. Using the activity concentration ratio (137)Cs/(239,240)Puglobal, the contribution of the Chernobyl NPP accident to the total radiocesium activity concentrations in these meadow soils was evaluated and found to be in the range of 6.5-59.1%. Meanwhile, the activity concentration ratio (238)Pu/(239,240)Pu showed that Chernobyl-derived Pu occurred at almost half of the sampling sites. The locations with maximal values of 47% of Chernobyl-derived Pu material were close to northeastern Poland, where deposition of most of non-volatile radioisotopes from the Chernobyl plume was determined. PMID:25893760

  1. Governing the global commons with local institutions.

    PubMed

    Bodnar, Todd; Salathé, Marcel

    2012-01-01

    Most problems faced by modern human society have two characteristics in common--they are tragedy-of-the-commons type of problems, and they are global problems. Tragedy-of-the-commons type of problems are those where a commonly shared resource is overexploited by free riders at the expense of everyone sharing the resource. The exploitation of global resources such as clean air and water, political stability and peace, etc. underlies many of the most pressing human problems. Punishment of free riding behavior is one of the most frequently used strategies to combat the problem, but the spatial reach of sanctioning institutions is often more limited than the spatial effects of overexploitation. Here, we analyze a general game theoretical model to assess under what circumstances sanctioning institutions with limited reach can maintain the larger commons. We find that the effect of the spatial reach has a strong effect on whether and how the commons can be maintained, and that the transitions between those outcomes are characterized by phase transitions. The latter indicates that a small change in the reach of sanctioning systems can profoundly change the way the global commons can be managed. PMID:22509269

  2. Governing the global commons with local institutions.

    PubMed

    Bodnar, Todd; Salathé, Marcel

    2012-01-01

    Most problems faced by modern human society have two characteristics in common--they are tragedy-of-the-commons type of problems, and they are global problems. Tragedy-of-the-commons type of problems are those where a commonly shared resource is overexploited by free riders at the expense of everyone sharing the resource. The exploitation of global resources such as clean air and water, political stability and peace, etc. underlies many of the most pressing human problems. Punishment of free riding behavior is one of the most frequently used strategies to combat the problem, but the spatial reach of sanctioning institutions is often more limited than the spatial effects of overexploitation. Here, we analyze a general game theoretical model to assess under what circumstances sanctioning institutions with limited reach can maintain the larger commons. We find that the effect of the spatial reach has a strong effect on whether and how the commons can be maintained, and that the transitions between those outcomes are characterized by phase transitions. The latter indicates that a small change in the reach of sanctioning systems can profoundly change the way the global commons can be managed.

  3. Common Interventional Radiology Procedures

    MedlinePlus

    ... of common interventional techniques is below. Common Interventional Radiology Procedures Angiography An X-ray exam of the ... into the vertebra. Copyright © 2016 Society of Interventional Radiology. All rights reserved. 3975 Fair Ridge Drive • Suite ...

  4. How Common Is the Common Core?

    ERIC Educational Resources Information Center

    Thomas, Amande; Edson, Alden J.

    2014-01-01

    Since the introduction of the Common Core State Standards for Mathematics (CCSSM) in 2010, stakeholders in adopting states have engaged in a variety of activities to understand CCSSM standards and transition from previous state standards. These efforts include research, professional development, assessment and modification of curriculum resources,…

  5. a Novel Approach to Veterinary Spatial Epidemiology: Dasymetric Refinement of the Swiss Dog Tumor Registry Data

    NASA Astrophysics Data System (ADS)

    Boo, G.; Fabrikant, S. I.; Leyk, S.

    2015-08-01

    In spatial epidemiology, disease incidence and demographic data are commonly summarized within larger regions such as administrative units because of privacy concerns. As a consequence, analyses using these aggregated data are subject to the Modifiable Areal Unit Problem (MAUP) as the geographical manifestation of ecological fallacy. In this study, we create small area disease estimates through dasymetric refinement, and investigate the effects on predictive epidemiological models. We perform a binary dasymetric refinement of municipality-aggregated dog tumor incidence counts in Switzerland for the year 2008 using residential land as a limiting ancillary variable. This refinement is expected to improve the quality of spatial data originally aggregated within arbitrary administrative units by deconstructing them into discontinuous subregions that better reflect the underlying population distribution. To shed light on effects of this refinement, we compare a predictive statistical model that uses unrefined administrative units with one that uses dasymetrically refined spatial units. Model diagnostics and spatial distributions of model residuals are assessed to evaluate the model performances in different regions. In particular, we explore changes in the spatial autocorrelation of the model residuals due to spatial refinement of the enumeration units in a selected mountainous region, where the rugged topography induces great shifts of the analytical units i.e., residential land. Such spatial data quality refinement results in a more realistic estimation of the population distribution within administrative units, and thus, in a more accurate modeling of dog tumor incidence patterns. Our results emphasize the benefits of implementing a dasymetric modeling framework in veterinary spatial epidemiology.

  6. The New Common School.

    ERIC Educational Resources Information Center

    Glenn, Charles L.

    1987-01-01

    Horace Mann's goal of creating a common school that brings our society's children together in mutual respect and common learning need not be frustrated by residential segregation and geographical separation of the haves and have-nots. Massachusetts' new common school vision boasts a Metro Program for minority students, 80 magnet schools, and…

  7. Knowledge representation for commonality

    NASA Technical Reports Server (NTRS)

    Yeager, Dorian P.

    1990-01-01

    Domain-specific knowledge necessary for commonality analysis falls into two general classes: commonality constraints and costing information. Notations for encoding such knowledge should be powerful and flexible and should appeal to the domain expert. The notations employed by the Commonality Analysis Problem Solver (CAPS) analysis tool are described. Examples are given to illustrate the main concepts.

  8. Canonical Commonality Analysis.

    ERIC Educational Resources Information Center

    Leister, K. Dawn

    Commonality analysis is a method of partitioning variance that has advantages over more traditional "OVA" methods. Commonality analysis indicates the amount of explanatory power that is "unique" to a given predictor variable and the amount of explanatory power that is "common" to or shared with at least one predictor variable. This paper outlines…

  9. The Origin of Roman Numerals

    ERIC Educational Resources Information Center

    Dapre, P. A.

    1977-01-01

    A theory on the origin of Roman numerals proposes that the principal numbers can be stylized in terms of a square. It is speculated that the abacus or its equivalents, such as the counter or chequer-board, was used to count before the alphabet became common. (SW)

  10. Spatial degradation of satellite data

    NASA Technical Reports Server (NTRS)

    Justice, C. O.; Markham, B. L.; Townshend, J. R. G.; Kennard, R. L.

    1989-01-01

    Consideration is given to a technique for spatially degrading high-resolution satellite data to produce comparable data sets over a range of coarser resolutions. Landsat MSS data is used to produce seven spatial resolution data sets by applying a spatial filter designed to simulate sensor response. Also, spatial degradation of coarse resolution data to provide data compression for the production of global-scale data sets is examined. NOAA AVHRR Global Area Coverage data is compared to other sampling procedures. It is found that sampling procedures that incorporate averaging result in decreased variance, while sampling procedures adopting single-value selection have higher variances and produce data values comparable with those from the original data.

  11. Spatial features register: toward standardization of spatial features

    USGS Publications Warehouse

    Cascio, Janette

    1994-01-01

    As the need to share spatial data increases, more than agreement on a common format is needed to ensure that the data is meaningful to both the importer and the exporter. Effective data transfer also requires common definitions of spatial features. To achieve this, part 2 of the Spatial Data Transfer Standard (SDTS) provides a model for a spatial features data content specification and a glossary of features and attributes that fit this model. The model provides a foundation for standardizing spatial features. The glossary now contains only a limited subset of hydrographic and topographic features. For it to be useful, terms and definitions must be included for other categories, such as base cartographic, bathymetric, cadastral, cultural and demographic, geodetic, geologic, ground transportation, international boundaries, soils, vegetation, water, and wetlands, and the set of hydrographic and topographic features must be expanded. This paper will review the philosophy of the SDTS part 2 and the current plans for creating a national spatial features register as one mechanism for maintaining part 2.

  12. Conceptualizing an Information Commons.

    ERIC Educational Resources Information Center

    Beagle, Donald

    1999-01-01

    Concepts from Strategic Alignment, a technology-management theory, are used to discuss the Information Commons as a new service-delivery model in academic libraries. The Information Commons, as a conceptual, physical, and instructional space, involves an organizational realignment from print to the digital environment. (Author)

  13. Campus Common Law

    ERIC Educational Resources Information Center

    Bakken, Gordon Morris

    1976-01-01

    Discusses the legal principle of common law as it applies to the personnel policies of colleges and universities in an attempt to define the parameters of campus common law and to clarify its relationship to written university policies and relevant state laws. (JG)

  14. Humanism as a common factor in psychotherapy.

    PubMed

    Wampold, Bruce E

    2012-12-01

    There are many forms of psychotherapies, each distinctive in its own way. From the origins of psychotherapy, it has been suggested that psychotherapy is effective through factors that are common to all therapies. In this article, I suggest that the commonalities that are at the core of psychotherapy are related to evolved human characteristics, which include (a) making sense of the world, (b) influencing through social means, and (c) connectedness, expectation, and mastery. In this way, all psychotherapies are humanistic.

  15. Spatial neglect

    PubMed Central

    Li, Korina; Malhotra, Paresh A

    2015-01-01

    The syndrome of visuospatial neglect is a common consequence of unilateral brain injury. It is most often associated with stroke and is more severe and persistent following right hemisphere damage, with reported frequencies in the acute stage of up to 80%. Neglect is primarily a disorder of attention whereby patients characteristically fail to orientate, to report or to respond to stimuli located on the contralesional side. Neglect is usually caused by large strokes in the middle cerebral artery territory and is heterogeneous, such that most patients do not manifest every feature of the syndrome. A number of treatments may improve neglect, but there is no widely accepted universal approach to therapy. Although most patients recover spontaneously, the evidence suggests that they continue to have significant cognitive impairments, particularly relating to attention. PMID:26023203

  16. Communication and common interest.

    PubMed

    Godfrey-Smith, Peter; Martínez, Manolo

    2013-01-01

    Explaining the maintenance of communicative behavior in the face of incentives to deceive, conceal information, or exaggerate is an important problem in behavioral biology. When the interests of agents diverge, some form of signal cost is often seen as essential to maintaining honesty. Here, novel computational methods are used to investigate the role of common interest between the sender and receiver of messages in maintaining cost-free informative signaling in a signaling game. Two measures of common interest are defined. These quantify the divergence between sender and receiver in their preference orderings over acts the receiver might perform in each state of the world. Sampling from a large space of signaling games finds that informative signaling is possible at equilibrium with zero common interest in both senses. Games of this kind are rare, however, and the proportion of games that include at least one equilibrium in which informative signals are used increases monotonically with common interest. Common interest as a predictor of informative signaling also interacts with the extent to which agents' preferences vary with the state of the world. Our findings provide a quantitative description of the relation between common interest and informative signaling, employing exact measures of common interest, information use, and contingency of payoff under environmental variation that may be applied to a wide range of models and empirical systems.

  17. Spatial memory in foraging games.

    PubMed

    Kerster, Bryan E; Rhodes, Theo; Kello, Christopher T

    2016-03-01

    Foraging and foraging-like processes are found in spatial navigation, memory, visual search, and many other search functions in human cognition and behavior. Foraging is commonly theorized using either random or correlated movements based on Lévy walks, or a series of decisions to remain or leave proximal areas known as "patches". Neither class of model makes use of spatial memory, but search performance may be enhanced when information about searched and unsearched locations is encoded. A video game was developed to test the role of human spatial memory in a canonical foraging task. Analyses of search trajectories from over 2000 human players yielded evidence that foraging movements were inherently clustered, and that clustering was facilitated by spatial memory cues and influenced by memory for spatial locations of targets found. A simple foraging model is presented in which spatial memory is used to integrate aspects of Lévy-based and patch-based foraging theories to perform a kind of area-restricted search, and thereby enhance performance as search unfolds. Using only two free parameters, the model accounts for a variety of findings that individually support competing theories, but together they argue for the integration of spatial memory into theories of foraging. PMID:26752603

  18. Spatial continuity measures for probabilistic and deterministic geostatistics

    SciTech Connect

    Isaaks, E.H.; Srivastava, R.M.

    1988-05-01

    Geostatistics has traditionally used a probabilistic framework, one in which expected values or ensemble averages are of primary importance. The less familiar deterministic framework views geostatistical problems in terms of spatial integrals. This paper outlines the two frameworks and examines the issue of which spatial continuity measure, the covariance C(h) or the variogram ..sigma..(h), is appropriate for each framework. Although C(h) and ..sigma..(h) were defined originally in terms of spatial integrals, the convenience of probabilistic notation made the expected value definitions more common. These now classical expected value definitions entail a linear relationship between C(h) and ..sigma..(h); the spatial integral definitions do not. In a probabilistic framework, where available sample information is extrapolated to domains other than the one which was sampled, the expected value definitions are appropriate; furthermore, within a probabilistic framework, reasons exist for preferring the variogram to the covariance function. In a deterministic framework, where available sample information is interpolated within the same domain, the spatial integral definitions are appropriate and no reasons are known for preferring the variogram. A case study on a Wiener-Levy process demonstrates differences between the two frameworks and shows that, for most estimation problems, the deterministic viewpoint is more appropriate. Several case studies on real data sets reveal that the sample covariance function reflects the character of spatial continuity better than the sample variogram. From both theoretical and practical considerations, clearly for most geostatistical problems, direct estimation of the covariance is better than the traditional variogram approach.

  19. Common clay and shale

    USGS Publications Warehouse

    Virta, R.L.

    2004-01-01

    Part of the 2003 industrial minerals review. The legislation, production, and consumption of common clay and shale are discussed. The average prices of the material and outlook for the market are provided.

  20. ACS: ALMA Common Software

    NASA Astrophysics Data System (ADS)

    Chiozzi, Gianluca; Šekoranja, Matej

    2013-02-01

    ALMA Common Software (ACS) provides a software infrastructure common to all ALMA partners and consists of a documented collection of common patterns and components which implement those patterns. The heart of ACS is based on a distributed Component-Container model, with ACS Components implemented as CORBA objects in any of the supported programming languages. ACS provides common CORBA-based services such as logging, error and alarm management, configuration database and lifecycle management. Although designed for ALMA, ACS can and is being used in other control systems and distributed software projects, since it implements proven design patterns using state of the art, reliable technology. It also allows, through the use of well-known standard constructs and components, that other team members whom are not authors of ACS easily understand the architecture of software modules, making maintenance affordable even on a very large project.

  1. Barry Commoner Assails Petrochemicals

    ERIC Educational Resources Information Center

    Chemical and Engineering News, 1973

    1973-01-01

    Discusses Commoner's ideas on the social value of the petrochemical industry and his suggestions for curtailment or elimination of its productive operation to produce a higher environmental quality for mankind at a relatively low loss in social benefit. (CC)

  2. Genomic Data Commons launches

    Cancer.gov

    The Genomic Data Commons (GDC), a unified data system that promotes sharing of genomic and clinical data between researchers, launched today with a visit from Vice President Joe Biden to the operations center at the University of Chicago.

  3. Common clay and shale

    USGS Publications Warehouse

    Virta, R.L.

    2011-01-01

    The article discusses the latest developments in the global common clay and shale industry, particularly in the U.S. It claims that common clay and shale is mainly used in the manufacture of heavy clay products like brick, flue tile and sewer pipe. The main producing states in the U.S. include North Carolina, New York and Oklahoma. Among the firms that manufacture clay and shale-based products are Mid America Brick & Structural Clay Products LLC and Boral USA.

  4. Common skin conditions.

    PubMed Central

    Ridley, M.; Safranek, M.

    1992-01-01

    Four common conditions: acne, psoriasis, eczema and urticaria are considered. Guidance is given on appropriate topical and systematic treatment for the different types and degrees of these conditions, with notes on management in general and criteria for referral to hospital outpatient departments. Where there are different types of the condition, with varying aetiology, for example in urticaria and eczema, management of the common types is outlined. PMID:1345156

  5. Common clay and shale

    USGS Publications Warehouse

    Virta, R.L.

    2006-01-01

    At present, 150 companies produce common clay and shale in 41 US states. According to the United States Geological Survey (USGS), domestic production in 2005 reached 24.8 Mt valued at $176 million. In decreasing order by tonnage, the leading producer states include North Carolina, Texas, Alabama, Georgia and Ohio. For the whole year, residential and commercial building construction remained the major market for common clay and shale products such as brick, drain tile, lightweight aggregate, quarry tile and structural tile.

  6. The Spatial Behaviour of Animals and Men

    ERIC Educational Resources Information Center

    Brindley, T. S.

    1973-01-01

    Describes some common patterns of animal spatial behavior, and discusses spatial relationships that can be observed as an important component of human social behavior. Reports the results of a study relating to the interpersonal distances of people in bus queues in Britain. (JR)

  7. Correlation as Probability of Common Descent.

    ERIC Educational Resources Information Center

    Falk, Ruma; Well, Arnold D.

    1996-01-01

    One interpretation of the Pearson product-moment correlation ("r"), correlation as the probability of originating from common descent, important to the genetic measurement of inbreeding, is examined. The conditions under which "r" can be interpreted as the probability of "identity by descent" are specified, and the possibility of generalizing this…

  8. Spatial-heterodyne interferometry for transmission (SHIFT) measurements

    DOEpatents

    Bingham, Philip R.; Hanson, Gregory R.; Tobin, Ken W.

    2006-10-10

    Systems and methods are described for spatial-heterodyne interferometry for transmission (SHIFT) measurements. A method includes digitally recording a spatially-heterodyned hologram including spatial heterodyne fringes for Fourier analysis using a reference beam, and an object beam that is transmitted through an object that is at least partially translucent; Fourier analyzing the digitally recorded spatially-heterodyned hologram, by shifting an original origin of the digitally recorded spatially-heterodyned hologram to sit on top of a spatial-heterodyne carrier frequency defined by an angle between the reference beam and the object beam, to define an analyzed image; digitally filtering the analyzed image to cut off signals around the original origin to define a result; and performing an inverse Fourier transform on the result.

  9. Lineage origins of GABAergic versus glutamatergic neurons in the neocortex

    PubMed Central

    Marín, Oscar; Müller, Ulrich

    2014-01-01

    Summary Neocortical circuits are assembled from subtypes of glutamatergic excitatory and GABAergic inhibitory neurons with divergent anatomical and molecular signatures and unique physiological properties. Excitatory neurons derive from progenitors in the pallium, whereas inhibitory neurons originate from progenitors in the subpallium. Both classes of neurons subsequently migrate along well-defined routes to their final target area, where they integrate into common neuronal circuits. Recent findings show that neuronal diversity within the lineages of excitatory and inhibitory neurons is in part already established at the level of progenitor cells prior to migration. This poses challenges for our understanding of how radial units of interconnected excitatory and inhibitory neurons are assembled from progenitors that are spatially segregated and diverse in nature. PMID:24549207

  10. Power system commonality study

    NASA Astrophysics Data System (ADS)

    Littman, Franklin D.

    1992-07-01

    A limited top level study was completed to determine the commonality of power system/subsystem concepts within potential lunar and Mars surface power system architectures. A list of power system concepts with high commonality was developed which can be used to synthesize power system architectures which minimize development cost. Examples of potential high commonality power system architectures are given in this report along with a mass comparison. Other criteria such as life cycle cost (which includes transportation cost), reliability, safety, risk, and operability should be used in future, more detailed studies to select optimum power system architectures. Nineteen potential power system concepts were identified and evaluated for planetary surface applications including photovoltaic arrays with energy storage, isotope, and nuclear power systems. A top level environmental factors study was completed to assess environmental impacts on the identified power system concepts for both lunar and Mars applications. Potential power system design solutions for commonality between Mars and lunar applications were identified. Isotope, photovoltaic array (PVA), regenerative fuel cell (RFC), stainless steel liquid-metal cooled reactors (less than 1033 K maximum) with dynamic converters, and in-core thermionic reactor systems were found suitable for both lunar and Mars environments. The use of SP-100 thermoelectric (TE) and SP-100 dynamic power systems in a vacuum enclosure may also be possible for Mars applications although several issues need to be investigated further (potential single point failure of enclosure, mass penalty of enclosure and active pumping system, additional installation time and complexity). There are also technical issues involved with development of thermionic reactors (life, serviceability, and adaptability to other power conversion units). Additional studies are required to determine the optimum reactor concept for Mars applications. Various screening

  11. Common Cause Failure Modes

    NASA Technical Reports Server (NTRS)

    Wetherholt, Jon; Heimann, Timothy J.; Anderson, Brenda

    2011-01-01

    High technology industries with high failure costs commonly use redundancy as a means to reduce risk. Redundant systems, whether similar or dissimilar, are susceptible to Common Cause Failures (CCF). CCF is not always considered in the design effort and, therefore, can be a major threat to success. There are several aspects to CCF which must be understood to perform an analysis which will find hidden issues that may negate redundancy. This paper will provide definition, types, a list of possible causes and some examples of CCF. Requirements and designs from NASA projects will be used in the paper as examples.

  12. Commonality based interoperability

    NASA Astrophysics Data System (ADS)

    Moulton, Christine L.; Hepp, Jared J.; Harrell, John

    2016-05-01

    What interoperability is and why the Army wants it between systems is easily understood. Enabling multiple systems to work together and share data across boundaries in a co-operative manner will benefit the warfighter by allowing for easy access to previously hard-to-reach capabilities. How to achieve interoperability is not as easy to understand due to the numerous different approaches that accomplish the goal. Commonality Based Interoperability (CBI) helps establish how to achieve the goal by extending the existing interoperability definition. CBI is not an implementation, nor is it an architecture; it is a definition of interoperability with a foundation of establishing commonality between systems.

  13. Did Darwin write the Origin backwards?

    PubMed Central

    Sober, Elliott

    2009-01-01

    After clarifying how Darwin understood natural selection and common ancestry, I consider how the two concepts are related in his theory. I argue that common ancestry has evidential priority. Arguments about natural selection often make use of the assumption of common ancestry, whereas arguments for common ancestry do not require the assumption that natural selection has been at work. In fact, Darwin held that the key evidence for common ancestry comes from characters whose evolution is not caused by natural selection. This raises the question of why Darwin puts natural selection first and foremost in the Origin. PMID:19528655

  14. Spatial Encounters: Exercises in Spatial Awareness.

    ERIC Educational Resources Information Center

    New Mexico Univ., Albuquerque.

    This series of activities on spatial relationships was designed to help users acquire the skills of spatial visualization and orientation and to improve their effectiveness in applying those skills. The series contains an introduction to spatial orientation with several self-directed activities to help improve that skill. It also contains seven…

  15. Four-dimensional spatial reasoning in humans.

    PubMed

    Aflalo, T N; Graziano, M S A

    2008-10-01

    Human subjects practiced navigation in a virtual, computer-generated maze that contained 4 spatial dimensions rather than the usual 3. The subjects were able to learn the spatial geometry of the 4-dimensional maze as measured by their ability to perform path integration, a standard test of spatial ability. They were able to travel down a winding corridor to its end and then point back accurately toward the occluded origin. One interpretation is that the brain substrate for spatial navigation is not a built-in map of the 3-dimensional world. Instead it may be better described as a set of general rules for manipulating spatial information that can be applied with practice to a diversity of spatial frameworks.

  16. Animal Evolution: The Hard Problem of Cartilage Origins.

    PubMed

    Brunet, Thibaut; Arendt, Detlev

    2016-07-25

    Our skeletons evolved from cartilaginous tissue, but it remains a mystery how cartilage itself first arose in evolution. Characterization of cartilage in cuttlefish and horseshoe crabs reveals surprising commonalities with chordate chondrocytes, suggesting a common evolutionary origin. PMID:27458918

  17. Animal Evolution: The Hard Problem of Cartilage Origins.

    PubMed

    Brunet, Thibaut; Arendt, Detlev

    2016-07-25

    Our skeletons evolved from cartilaginous tissue, but it remains a mystery how cartilage itself first arose in evolution. Characterization of cartilage in cuttlefish and horseshoe crabs reveals surprising commonalities with chordate chondrocytes, suggesting a common evolutionary origin.

  18. Solving Common Mathematical Problems

    NASA Technical Reports Server (NTRS)

    Luz, Paul L.

    2005-01-01

    Mathematical Solutions Toolset is a collection of five software programs that rapidly solve some common mathematical problems. The programs consist of a set of Microsoft Excel worksheets. The programs provide for entry of input data and display of output data in a user-friendly, menu-driven format, and for automatic execution once the input data has been entered.

  19. Common food allergies.

    PubMed

    McKevith, Brigid; Theobald, Hannah

    The incidence of allergic disease, including food allergy, appears to be increasing in the UK (Gupta et al 2003). Although any food has the potential to cause an allergic reaction, certain foods are more common causes of allergy than others. If diagnosed, food allergy is manageable. Correct diagnosis is important to ensure optimal management and a nutritionally balanced diet.

  20. Common clay and shale

    USGS Publications Warehouse

    Virta, R.L.

    2003-01-01

    Part of the 2002 industrial minerals review. The production, consumption, and price of shale and common clay in the U.S. during 2002 are discussed. The impact of EPA regulations on brick and structural clay product manufacturers is also outlined.

  1. Common clay and shale

    USGS Publications Warehouse

    Virta, R.L.

    2001-01-01

    Part of the 2000 annual review of the industrial minerals sector. A general overview of the common clay and shale industry is provided. In 2000, U.S. production increased by 5 percent, while sales or use declined to 23.6 Mt. Despite the slowdown in the economy, no major changes are expected for the market.

  2. Math, Literacy, & Common Standards

    ERIC Educational Resources Information Center

    Education Week, 2012

    2012-01-01

    Nearly every state has signed on to use the Common Core State Standards as a framework for teaching English/language arts and mathematics to students. Translating them for the classroom, however, requires schools, teachers, and students to change the way they approach teaching and learning. This report examines the progress some states have made…

  3. Common Carrier Services.

    ERIC Educational Resources Information Center

    Federal Communications Commission, Washington, DC.

    This bulletin outlines the Federal Communications Commission's (FCC) responsibilities in regulating the interstate and foreign common carrier communication via electrical means. Also summarized are the history, technological development, and current capabilities and prospects of telegraph, wire telephone, radiotelephone, satellite communications,…

  4. Common Carrier Services.

    ERIC Educational Resources Information Center

    Federal Communications Commission, Washington, DC.

    After outlining the Federal Communications Commission's (FCC) responsibility for regulating interstate common carrier communication (non-broadcast communication whose carriers are required by law to furnish service at reasonable charges upon request), this information bulletin reviews the history, technological development, and current…

  5. Pleasure: the common currency.

    PubMed

    Cabanac, M

    1992-03-21

    At present as physiologists studying various homeostatic behaviors, such as thermoregulatory behavior and food and fluid intake, we have no common currency that allows us to equate the strength of the motivational drive that accompanies each regulatory need, in terms of how an animal or a person will choose to satisfy his needs when there is a conflict between two or more of them. Yet the behaving organism must rank his priorities and needs a common currency to achieve the ranking (McFarland & Sibly, 1975, Phil. Trans. R. Soc. Lond. 270 Biol 265-293). A theory is proposed here according to which pleasure is this common currency. The perception of pleasure, as measured operationally and quantitatively by choice behavior (in the case of animals), or by the rating of the intensity of pleasure or displeasure (in the case of humans) can serve as such a common currency. The tradeoffs between various motivations would thus be accomplished by simple maximization of pleasure. In what follows, the scientific work arising recently on this subject, with be reviewed briefly and our recent experimental findings will be presented. This will serve as the support for the theoretical position formulated in this essay.

  6. Common Dermatoses of Infancy

    PubMed Central

    Gora, Irv

    1986-01-01

    Within the pediatric population of their practices, family physicians frequently encounter infants with skin rashes. This article discusses several of the more common rashes of infancy: atopic dermatitis, cradle cap, diaper dermatitis and miliaria. Etiology, clinical picture and possible approaches to treatment are presented. ImagesFigure 1Figure 2Figure 3Figure 4Figure 5Figure 6Figure 7 PMID:21267297

  7. Space station commonality analysis

    NASA Technical Reports Server (NTRS)

    1988-01-01

    This study was conducted on the basis of a modification to Contract NAS8-36413, Space Station Commonality Analysis, which was initiated in December, 1987 and completed in July, 1988. The objective was to investigate the commonality aspects of subsystems and mission support hardware while technology experiments are accommodated on board the Space Station in the mid-to-late 1990s. Two types of mission are considered: (1) Advanced solar arrays and their storage; and (2) Satellite servicing. The point of departure for definition of the technology development missions was a set of missions described in the Space Station Mission Requirements Data Base. (MRDB): TDMX 2151 Solar Array/Energy Storage Technology; TDMX 2561 Satellite Servicing and Refurbishment; TDMX 2562 Satellite Maintenance and Repair; TDMX 2563 Materials Resupply (to a free-flyer materials processing platform); TDMX 2564 Coatings Maintenance Technology; and TDMX 2565 Thermal Interface Technology. Issues to be addressed according to the Statement of Work included modularity of programs, data base analysis interactions, user interfaces, and commonality. The study was to consider State-of-the-art advances through the 1990s and to select an appropriate scale for the technology experiments, considering hardware commonality, user interfaces, and mission support requirements. The study was to develop evolutionary plans for the technology advancement missions.

  8. Common Standards for All

    ERIC Educational Resources Information Center

    Principal, 2010

    2010-01-01

    About three-fourths of the states have already adopted the Common Core State Standards, which were designed to provide more clarity about and consistency in what is expected of student learning across the country. However, given the brief time since the standards' final release in June, questions persist among educators, who will have the…

  9. Common Magnets, Unexpected Polarities

    ERIC Educational Resources Information Center

    Olson, Mark

    2013-01-01

    In this paper, I discuss a "misconception" in magnetism so simple and pervasive as to be typically unnoticed. That magnets have poles might be considered one of the more straightforward notions in introductory physics. However, the magnets common to students' experiences are likely different from those presented in educational…

  10. Common File Formats.

    PubMed

    Mills, Lauren

    2014-03-21

    An overview of the many file formats commonly used in bioinformatics and genome sequence analysis is presented, including various data file formats, alignment file formats, and annotation file formats. Example workflows illustrate how some of the different file types are typically used.

  11. Pleasure: the common currency.

    PubMed

    Cabanac, M

    1992-03-21

    At present as physiologists studying various homeostatic behaviors, such as thermoregulatory behavior and food and fluid intake, we have no common currency that allows us to equate the strength of the motivational drive that accompanies each regulatory need, in terms of how an animal or a person will choose to satisfy his needs when there is a conflict between two or more of them. Yet the behaving organism must rank his priorities and needs a common currency to achieve the ranking (McFarland & Sibly, 1975, Phil. Trans. R. Soc. Lond. 270 Biol 265-293). A theory is proposed here according to which pleasure is this common currency. The perception of pleasure, as measured operationally and quantitatively by choice behavior (in the case of animals), or by the rating of the intensity of pleasure or displeasure (in the case of humans) can serve as such a common currency. The tradeoffs between various motivations would thus be accomplished by simple maximization of pleasure. In what follows, the scientific work arising recently on this subject, with be reviewed briefly and our recent experimental findings will be presented. This will serve as the support for the theoretical position formulated in this essay. PMID:12240693

  12. Navagating the Common Core

    ERIC Educational Resources Information Center

    McShane, Michael Q.

    2014-01-01

    This article presents a debate over the Common Core State Standards Initiative as it has rocketed to the forefront of education policy discussions around the country. The author contends that there is value in having clear cross state standards that will clarify the new online and blended learning that the growing use of technology has provided…

  13. Information Commons to Go

    ERIC Educational Resources Information Center

    Bayer, Marc Dewey

    2008-01-01

    Since 2004, Buffalo State College's E. H. Butler Library has used the Information Commons (IC) model to assist its 8,500 students with library research and computer applications. Campus Technology Services (CTS) plays a very active role in its IC, with a centrally located Computer Help Desk and a newly created Application Support Desk right in the…

  14. Common conversion factors.

    PubMed

    2001-05-01

    This appendix presents tables of some of the more common conversion factors for units of measure used throughout Current Protocols manuals, as well as prefixes indicating powers of ten for SI units. Another table gives conversions between temperatures on the Celsius (Centigrade) and Fahrenheit scales. PMID:18770653

  15. Common file formats.

    PubMed

    Leonard, Shonda A; Littlejohn, Timothy G; Baxevanis, Andreas D

    2007-01-01

    This appendix discusses a few of the file formats frequently encountered in bioinformatics. Specifically, it reviews the rules for generating FASTA files and provides guidance for interpreting NCBI descriptor lines, commonly found in FASTA files. In addition, it reviews the construction of GenBank, Phylip, MSF and Nexus files. PMID:18428774

  16. A Language in Common.

    ERIC Educational Resources Information Center

    1963

    This collection of articles reprinted from the "London Times Literary Supplement" indicates the flexibility of English as a common literary language in its widespread use outside the United States and England. Major articles present the thesis that English provides an artistic medium which is enriched through colloquial idioms in the West Indies…

  17. COMMON LISP: The language

    SciTech Connect

    Steele, G.L. Jr.

    1984-01-01

    This book describes COMMON LISP,which is becoming the industry and government standard AI language. Topics covered include the following: data types; scope and extent; type specifiers; program structure; predicates; control structure; macros; declarations; symbols; packages; numbers; characters; sequences; lists; hash tables; arrays; strings; structures; the evaluator; streams; input/output; file system interface; and errors.

  18. Chunking in Spatial Memory

    PubMed Central

    Sargent, Jesse; Dopkins, Stephen; Philbeck, John; Chichka, David

    2010-01-01

    In order to gain insight into the nature of human spatial representations, the current study examined how those representations are affected by blind rotation. Evidence was sought on the possibility that whereas certain environmental aspects may be updated independently of one another, other aspects may be grouped (or chunked) together and updated as a unit. Participants learned the locations of an array of objects around them in a room, then were blindfolded and underwent a succession of passive, whole-body rotations. After each rotation, participants pointed to remembered target locations. Targets were located more precisely relative to each other if they were (a) separated by smaller angular distances, (b) contained within the same regularly configured arrangement, or (c) corresponded to parts of a common object. A hypothesis is presented describing the roles played by egocentric and allocentric information within the spatial updating system. Results are interpreted in terms of an existing neural systems model, elaborating the model’s conceptualization of how parietal (egocentric) and medial temporal (allocentric) representations interact. PMID:20438258

  19. Common Magnets, Unexpected Polarities

    NASA Astrophysics Data System (ADS)

    Olson, Mark

    2013-11-01

    In this paper, I discuss a "misconception" in magnetism so simple and pervasive as to be typically unnoticed. That magnets have poles might be considered one of the more straightforward notions in introductory physics. However, the magnets common to students' experiences are likely different from those presented in educational contexts. This leads students, in my experience, to frequently and erroneously attribute magnetic poles based on geometric associations rather than actual observed behavior. This polarity discrepancy can provide teachers the opportunity to engage students in authentic inquiry about objects in their daily experiences. I've found that investigation of the magnetic polarities of common magnets provides a productive context for students in which to develop valuable and authentic scientific inquiry practices.

  20. Common tester platform concept.

    SciTech Connect

    Hurst, Michael James

    2008-05-01

    This report summarizes the results of a case study on the doctrine of a common tester platform, a concept of a standardized platform that can be applicable across the broad spectrum of testing requirements throughout the various stages of a weapons program, as well as across the various weapons programs. The common tester concept strives to define an affordable, next-generation design that will meet testing requirements with the flexibility to grow and expand; supporting the initial development stages of a weapons program through to the final production and surveillance stages. This report discusses a concept investing key leveraging technologies and operational concepts combined with prototype tester-development experiences and practical lessons learned gleaned from past weapons programs.

  1. Common Cause Failure Modeling

    NASA Technical Reports Server (NTRS)

    Hark, Frank; Britton, Paul; Ring, Rob; Novack, Steven D.

    2015-01-01

    Common Cause Failures (CCFs) are a known and documented phenomenon that defeats system redundancy. CCFS are a set of dependent type of failures that can be caused by: system environments; manufacturing; transportation; storage; maintenance; and assembly, as examples. Since there are many factors that contribute to CCFs, the effects can be reduced, but they are difficult to eliminate entirely. Furthermore, failure databases sometimes fail to differentiate between independent and CCF (dependent) failure and data is limited, especially for launch vehicles. The Probabilistic Risk Assessment (PRA) of NASA's Safety and Mission Assurance Directorate at Marshall Space Flight Center (MFSC) is using generic data from the Nuclear Regulatory Commission's database of common cause failures at nuclear power plants to estimate CCF due to the lack of a more appropriate data source. There remains uncertainty in the actual magnitude of the common cause risk estimates for different systems at this stage of the design. Given the limited data about launch vehicle CCF and that launch vehicles are a highly redundant system by design, it is important to make design decisions to account for a range of values for independent and CCFs. When investigating the design of the one-out-of-two component redundant system for launch vehicles, a response surface was constructed to represent the impact of the independent failure rate versus a common cause beta factor effect on a system's failure probability. This presentation will define a CCF and review estimation calculations. It gives a summary of reduction methodologies and a review of examples of historical CCFs. Finally, it presents the response surface and discusses the results of the different CCFs on the reliability of a one-out-of-two system.

  2. Common Anorectal Disorders

    PubMed Central

    Foxx-Orenstein, Amy E.; Umar, Sarah B.; Crowell, Michael D.

    2014-01-01

    Anorectal disorders result in many visits to healthcare specialists. These disorders include benign conditions such as hemorrhoids to more serious conditions such as malignancy; thus, it is important for the clinician to be familiar with these disorders as well as know how to conduct an appropriate history and physical examination. This article reviews the most common anorectal disorders, including hemorrhoids, anal fissures, fecal incontinence, proctalgia fugax, excessive perineal descent, and pruritus ani, and provides guidelines on comprehensive evaluation and management. PMID:24987313

  3. Common Cause Failure Modeling

    NASA Technical Reports Server (NTRS)

    Hark, Frank; Britton, Paul; Ring, Rob; Novack, Steven D.

    2016-01-01

    Common Cause Failures (CCFs) are a known and documented phenomenon that defeats system redundancy. CCFS are a set of dependent type of failures that can be caused by: system environments; manufacturing; transportation; storage; maintenance; and assembly, as examples. Since there are many factors that contribute to CCFs, the effects can be reduced, but they are difficult to eliminate entirely. Furthermore, failure databases sometimes fail to differentiate between independent and CCF (dependent) failure and data is limited, especially for launch vehicles. The Probabilistic Risk Assessment (PRA) of NASA's Safety and Mission Assurance Directorate at Marshal Space Flight Center (MFSC) is using generic data from the Nuclear Regulatory Commission's database of common cause failures at nuclear power plants to estimate CCF due to the lack of a more appropriate data source. There remains uncertainty in the actual magnitude of the common cause risk estimates for different systems at this stage of the design. Given the limited data about launch vehicle CCF and that launch vehicles are a highly redundant system by design, it is important to make design decisions to account for a range of values for independent and CCFs. When investigating the design of the one-out-of-two component redundant system for launch vehicles, a response surface was constructed to represent the impact of the independent failure rate versus a common cause beta factor effect on a system's failure probability. This presentation will define a CCF and review estimation calculations. It gives a summary of reduction methodologies and a review of examples of historical CCFs. Finally, it presents the response surface and discusses the results of the different CCFs on the reliability of a one-out-of-two system.

  4. 'Historicising common sense'.

    PubMed

    Millstone, Noah

    2012-12-01

    This essay is an expanded set of comments on the social psychology papers written for the special issue on History and Social Psychology. It considers what social psychology, and particularly the theory of social representations, might offer historians working on similar problems, and what historical methods might offer social psychology. The social history of thinking has been a major theme in twentieth and twenty-first century historical writing, represented most recently by the genre of 'cultural history'. Cultural history and the theory of social representations have common ancestors in early twentieth-century social science. Nevertheless, the two lines of research have developed in different ways and are better seen as complementary than similar. The theory of social representations usefully foregrounds issues, like social division and change over time, that cultural history relegates to the background. But for historians, the theory of social representations seems oddly fixated on comparing the thought styles associated with positivist science and 'common sense'. Using historical analysis, this essay tries to dissect the core opposition 'science : common sense' and argues for a more flexible approach to comparing modes of thought.

  5. Common Geometry Module

    2005-01-01

    The Common Geometry Module (CGM) is a code library which provides geometry functionality used for mesh generation and other applications. This functionality includes that commonly found in solid modeling engines, like geometry creation, query and modification; CGM also includes capabilities not commonly found in solid modeling engines, like geometry decomposition tools and support for shared material interfaces. CGM is built upon the ACIS solid modeling engine, but also includes geometry capability developed beside and onmore » top of ACIS. CGM can be used as-is to provide geometry functionality for codes needing this capability. However, CGM can also be extended using derived classes in C++, allowing the geometric model to serve as the basis for other applications, for example mesh generation. CGM is supported on Sun Solaris, SGI, HP, IBM, DEC, Linux and Windows NT platforms. CGM also indudes support for loading ACIS models on parallel computers, using MPI-based communication. Future plans for CGM are to port it to different solid modeling engines, including Pro/Engineer or SolidWorks. CGM is being released into the public domain under an LGPL license; the ACIS-based engine is available to ACIS licensees on request.« less

  6. Spatial attention systems in spatial neglect.

    PubMed

    Karnath, Hans-Otto

    2015-08-01

    It has been established that processes relating to 'spatial attention' are implemented at cortical level by goal-directed (top-down) and stimulus-driven (bottom-up) networks. Spatial neglect in brain-damaged individuals has been interpreted as a distinguished exemplar for a disturbance of these processes. The present paper elaborates this assumption. Functioning of the two attentional networks seem to dissociate in spatial neglect; behavioral studies of patients' orienting and exploration behavior point to a disturbed stimulus-driven but preserved goal-directed attention system. When a target suddenly appears somewhere in space, neglect patients demonstrate disturbed detection and orienting if it is located in contralesional direction. In contrast, if neglect patients explore a scene with voluntarily, top-down controlled shifts of spatial attention, they perform movements that are oriented into all spatial directions without any direction-specific disturbances. The paper thus argues that not the top-down control of spatial attention itself, rather a body-related matrix on top of which this process is executed, seems affected. In that sense, the traditional role of spatial neglect as a stroke model for 'spatial attention' requires adjustment. Beyond its insights into the human stimulus-driven attentional system, the disorder most notably provides vistas in how our brain encodes topographical information and organizes spatially oriented action - including the top-down control of spatial attention - in relation to body position.

  7. Phenotyping common beans for adaptation to drought.

    PubMed

    Beebe, Stephen E; Rao, Idupulapati M; Blair, Matthew W; Acosta-Gallegos, Jorge A

    2013-01-01

    Common beans (Phaseolus vulgaris L.) originated in the New World and are the grain legume of greatest production for direct human consumption. Common bean production is subject to frequent droughts in highland Mexico, in the Pacific coast of Central America, in northeast Brazil, and in eastern and southern Africa from Ethiopia to South Africa. This article reviews efforts to improve common bean for drought tolerance, referring to genetic diversity for drought response, the physiology of drought tolerance mechanisms, and breeding strategies. Different races of common bean respond differently to drought, with race Durango of highland Mexico being a major source of genes. Sister species of P. vulgaris likewise have unique traits, especially P. acutifolius which is well adapted to dryland conditions. Diverse sources of tolerance may have different mechanisms of plant response, implying the need for different methods of phenotyping to recognize the relevant traits. Practical considerations of field management are discussed including: trial planning; water management; and field preparation.

  8. Phenotyping common beans for adaptation to drought

    PubMed Central

    Beebe, Stephen E.; Rao, Idupulapati M.; Blair, Matthew W.; Acosta-Gallegos, Jorge A.

    2013-01-01

    Common beans (Phaseolus vulgaris L.) originated in the New World and are the grain legume of greatest production for direct human consumption. Common bean production is subject to frequent droughts in highland Mexico, in the Pacific coast of Central America, in northeast Brazil, and in eastern and southern Africa from Ethiopia to South Africa. This article reviews efforts to improve common bean for drought tolerance, referring to genetic diversity for drought response, the physiology of drought tolerance mechanisms, and breeding strategies. Different races of common bean respond differently to drought, with race Durango of highland Mexico being a major source of genes. Sister species of P. vulgaris likewise have unique traits, especially P. acutifolius which is well adapted to dryland conditions. Diverse sources of tolerance may have different mechanisms of plant response, implying the need for different methods of phenotyping to recognize the relevant traits. Practical considerations of field management are discussed including: trial planning; water management; and field preparation. PMID:23507928

  9. Managing the wildlife tourism commons.

    PubMed

    Pirotta, Enrico; Lusseau, David

    2015-04-01

    The nonlethal effects of wildlife tourism can threaten the conservation status of targeted animal populations. In turn, such resource depletion can compromise the economic viability of the industry. Therefore, wildlife tourism exploits resources that can become common pool and that should be managed accordingly. We used a simulation approach to test whether different management regimes (tax, tax and subsidy, cap, cap and trade) could provide socioecologically sustainable solutions. Such schemes are sensitive to errors in estimated management targets. We determined the sensitivity of each scenario to various realistic uncertainties in management implementation and in our knowledge of the population. Scenarios where time quotas were enforced using a tax and subsidy approach, or they were traded between operators were more likely to be sustainable. Importantly, sustainability could be achieved even when operators were assumed to make simple rational economic decisions. We suggest that a combination of the two regimes might offer a robust solution, especially on a small spatial scale and under the control of a self-organized, operator-level institution. Our simulation platform could be parameterized to mimic local conditions and provide a test bed for experimenting different governance solutions in specific case studies.

  10. On the common envelope efficiency

    NASA Astrophysics Data System (ADS)

    Zuo, Zhao-Yu; Li, Xiang-Dong

    2014-08-01

    In this work, we try to use the apparent luminosity versus displacement (i.e. LX versus R) correlation of high-mass X-ray binaries (HMXBs) to constrain the common envelope (CE) efficiency αCE, which is a key parameter affecting the evolution of the binary orbit during the CE phase. The major updates that are crucial for the CE evolution include a variable λ parameter and a new CE criterion for Hertzsprung gap donor stars, both of which are recently developed. We find that, within the framework of the standard energy formula for CE and core definition at mass X = 10 per cent, a high value of αCE, i.e. around 0.8-1.0, is more preferable, while αCE < ˜0.4 likely can not reconstruct the observed LX versus R distribution. However, due to an ambiguous definition for the core boundary in the literature, the used λ here still carries almost two order of magnitude uncertainty, which may translate directly to the expected value of αCE. We present the detailed components of current HMXBs and their spatial offsets from star clusters, which may be further testified by future observations of HMXB populations in nearby star-forming galaxies.

  11. Approximate spatial reasoning

    NASA Technical Reports Server (NTRS)

    Dutta, Soumitra

    1988-01-01

    A model for approximate spatial reasoning using fuzzy logic to represent the uncertainty in the environment is presented. Algorithms are developed which can be used to reason about spatial information expressed in the form of approximate linguistic descriptions similar to the kind of spatial information processed by humans. Particular attention is given to static spatial reasoning.

  12. The Origin(s) of Whales

    NASA Astrophysics Data System (ADS)

    Uhen, Mark D.

    2010-05-01

    Whales are first found in the fossil record approximately 52.5 million years ago (Mya) during the early Eocene in Indo-Pakistan. Our knowledge of early and middle Eocene whales has increased dramatically during the past three decades to the point where hypotheses of whale origins can be supported with a great deal of evidence from paleontology, anatomy, stratigraphy, and molecular biology. Fossils also provide preserved evidence of behavior and habitats, allowing the reconstruction of the modes of life of these semiaquatic animals during their transition from land to sea. Modern whales originated from ancient whales at or near the Eocene/Oligocene boundary, approximately 33.7 Mya. During the Oligocene, ancient whales coexisted with early baleen whales and early toothed whales. By the end of the Miocene, most modern families had originated, and most archaic forms had gone extinct. Whale diversity peaked in the late middle Miocene and fell thereafter toward the Recent, yielding our depauperate modern whale fauna.

  13. Spatial Vision in Bombus terrestris.

    PubMed

    Chakravarthi, Aravin; Baird, Emily; Dacke, Marie; Kelber, Almut

    2016-01-01

    Bombus terrestris is one of the most commonly used insect models to investigate visually guided behavior and spatial vision in particular. Two fundamental measures of spatial vision are spatial resolution and contrast sensitivity. In this study, we report the threshold of spatial resolution in B. terrestris and characterize the contrast sensitivity function of the bumblebee visual system for a dual choice discrimination task. We trained bumblebees in a Y-maze experimental set-up to associate a vertical sinusoidal grating with a sucrose reward, and a horizontal grating with absence of a reward. Using a logistic psychometric function, we estimated a resolution threshold of 0.21 cycles deg(-1) of visual angle. This resolution is in the same range but slightly lower than that found in honeybees (Apis mellifera and A. cerana) and another bumblebee species (B. impatiens). We also found that the contrast sensitivity of B. terrestris was 1.57 for the spatial frequency 0.090 cycles deg(-1) and 1.26 for 0.18 cycles deg(-1). PMID:26912998

  14. Spatial Vision in Bombus terrestris

    PubMed Central

    Chakravarthi, Aravin; Baird, Emily; Dacke, Marie; Kelber, Almut

    2016-01-01

    Bombus terrestris is one of the most commonly used insect models to investigate visually guided behavior and spatial vision in particular. Two fundamental measures of spatial vision are spatial resolution and contrast sensitivity. In this study, we report the threshold of spatial resolution in B. terrestris and characterize the contrast sensitivity function of the bumblebee visual system for a dual choice discrimination task. We trained bumblebees in a Y-maze experimental set-up to associate a vertical sinusoidal grating with a sucrose reward, and a horizontal grating with absence of a reward. Using a logistic psychometric function, we estimated a resolution threshold of 0.21 cycles deg−1 of visual angle. This resolution is in the same range but slightly lower than that found in honeybees (Apis mellifera and A. cerana) and another bumblebee species (B. impatiens). We also found that the contrast sensitivity of B. terrestris was 1.57 for the spatial frequency 0.090 cycles deg−1 and 1.26 for 0.18 cycles deg−1. PMID:26912998

  15. Spatial Vision in Bombus terrestris.

    PubMed

    Chakravarthi, Aravin; Baird, Emily; Dacke, Marie; Kelber, Almut

    2016-01-01

    Bombus terrestris is one of the most commonly used insect models to investigate visually guided behavior and spatial vision in particular. Two fundamental measures of spatial vision are spatial resolution and contrast sensitivity. In this study, we report the threshold of spatial resolution in B. terrestris and characterize the contrast sensitivity function of the bumblebee visual system for a dual choice discrimination task. We trained bumblebees in a Y-maze experimental set-up to associate a vertical sinusoidal grating with a sucrose reward, and a horizontal grating with absence of a reward. Using a logistic psychometric function, we estimated a resolution threshold of 0.21 cycles deg(-1) of visual angle. This resolution is in the same range but slightly lower than that found in honeybees (Apis mellifera and A. cerana) and another bumblebee species (B. impatiens). We also found that the contrast sensitivity of B. terrestris was 1.57 for the spatial frequency 0.090 cycles deg(-1) and 1.26 for 0.18 cycles deg(-1).

  16. Common rodent procedures.

    PubMed

    Klaphake, Eric

    2006-05-01

    Rodents are commonly owned exotic animal pets that may be seen by veterinary practitioners. Although most owners presenting their animals do care about their pets, they may not be aware of the diagnostic possibilities and challenges that can be offered by rodents to the veterinarian. Understanding clinical anatomy, proper hand-ling technique, realistic management of emergency presentations,correct and feasible diagnostic sampling, anesthesia, and humane euthanasia procedures is important to enhancing the doctor-client-patient relationship, especially when financial constraints may be imposed by the owner. PMID:16759953

  17. Common pediatric epilepsy syndromes.

    PubMed

    Park, Jun T; Shahid, Asim M; Jammoul, Adham

    2015-02-01

    Benign rolandic epilepsy (BRE), childhood idiopathic occipital epilepsy (CIOE), childhood absence epilepsy (CAE), and juvenile myoclonic epilepsy (JME) are some of the common epilepsy syndromes in the pediatric age group. Among the four, BRE is the most commonly encountered. BRE remits by age 16 years with many children requiring no treatment. Seizures in CAE also remit at the rate of approximately 80%; whereas, JME is considered a lifelong condition even with the use of antiepileptic drugs (AEDs). Neonates and infants may also present with seizures that are self-limited with no associated psychomotor disturbances. Benign familial neonatal convulsions caused by a channelopathy, and inherited in an autosomal dominant manner, have a favorable outcome with spontaneous resolution. Benign idiopathic neonatal seizures, also referred to as "fifth-day fits," are an example of another epilepsy syndrome in infants that carries a good prognosis. BRE, CIOE, benign familial neonatal convulsions, benign idiopathic neonatal seizures, and benign myoclonic epilepsy in infancy are characterized as "benign" idiopathic age-related epilepsies as they have favorable implications, no structural brain abnormality, are sensitive to AEDs, have a high remission rate, and have no associated psychomotor disturbances. However, sometimes selected patients may have associated comorbidities such as cognitive and language delay for which the term "benign" may not be appropriate.

  18. Common Variable Immunodeficiency.

    PubMed

    Saikia, Biman; Gupta, Sudhir

    2016-04-01

    Common variable immunodeficiency (CVID) is the most common primary immunodeficiency of young adolescents and adults which also affects the children. The disease remains largely under-diagnosed in India and Southeast Asian countries. Although in majority of cases it is sporadic, disease may be inherited in a autosomal recessive pattern and rarely, in autosomal dominant pattern. Patients, in addition to frequent sino-pulmonary infections, are also susceptible to various autoimmune diseases and malignancy, predominantly lymphoma and leukemia. Other characteristic lesions include lymphocytic and granulomatous interstitial lung disease, and nodular lymphoid hyperplasia of gut. Diagnosis requires reduced levels of at least two immunoglobulin isotypes: IgG with IgA and/or IgM and impaired specific antibody response to vaccines. A number of gene mutations have been described in CVID; however, these genetic alterations account for less than 20% of cases of CVID. Flow cytometry aptly demonstrates a disturbed B cell homeostasis with reduced or absent memory B cells and increased CD21(low) B cells and transitional B cell populations. Approximately one-third of patients with CVID also display T cell functional defects. Immunoglobulin therapy remains the mainstay of treatment. Immunologists and other clinicians in India and other South East Asian countries need to be aware of CVID so that early diagnosis can be made, as currently, majority of these patients still go undiagnosed. PMID:26868026

  19. Faster processing of multiple spatially-heterodyned direct to digital holograms

    DOEpatents

    Hanson, Gregory R [Clinton, TN; Bingham, Philip R [Knoxville, TN

    2008-09-09

    Systems and methods are described for faster processing of multiple spatially-heterodyned direct to digital holograms. A method includes of obtaining multiple spatially-heterodyned holograms, includes: digitally recording a first spatially-heterodyned hologram including spatial heterodyne fringes for Fourier analysis; digitally recording a second spatially-heterodyned hologram including spatial heterodyne fringes for Fourier analysis; Fourier analyzing the recorded first spatially-heterodyned hologram by shifting a first original origin of the recorded first spatially-heterodyned hologram including spatial heterodyne fringes in Fourier space to sit on top of a spatial-heterodyne carrier frequency defined as a first angle between a first reference beam and a first object beam; applying a first digital filter to cut off signals around the first original origin and performing an inverse Fourier transform on the result; Fourier analyzing the recorded second spatially-heterodyned hologram by shifting a second original origin of the recorded second spatially-heterodyned hologram including spatial heterodyne fringes in Fourier space to sit on top of a spatial-heterodyne carrier frequency defined as a second angle between a second reference beam and a second object beam; and applying a second digital filter to cut off signals around the second original origin and performing an inverse Fourier transform on the result, wherein digitally recording the first spatially-heterodyned hologram is completed before digitally recording the second spatially-heterodyned hologram and a single digital image includes both the first spatially-heterodyned hologram and the second spatially-heterodyned hologram.

  20. Faster processing of multiple spatially-heterodyned direct to digital holograms

    DOEpatents

    Hanson, Gregory R.; Bingham, Philip R.

    2006-10-03

    Systems and methods are described for faster processing of multiple spatially-heterodyned direct to digital holograms. A method includes of obtaining multiple spatially-heterodyned holograms, includes: digitally recording a first spatially-heterodyned hologram including spatial heterodyne fringes for Fourier analysis; digitally recording a second spatially-heterodyned hologram including spatial heterodyne fringes for Fourier analysis; Fourier analyzing the recorded first spatially-heterodyned hologram by shifting a first original origin of the recorded first spatially-heterodyned hologram including spatial heterodyne fringes in Fourier space to sit on top of a spatial-heterodyne carrier frequency defined as a first angle between a first reference beam and a first, object beam; applying a first digital filter to cut off signals around the first original origin and performing an inverse Fourier transform on the result; Fourier analyzing the recorded second spatially-heterodyned hologram by shifting a second original origin of the recorded second spatially-heterodyned hologram including spatial heterodyne fringes in Fourier space to sit on top of a spatial-heterodyne carrier frequency defined as a second angle between a second reference beam and a second object beam; and applying a second digital filter to cut off signals around the second original origin and performing an inverse Fourier transform on the result, wherein digitally recording the first spatially-heterodyned hologram is completed before digitally recording the second spatially-heterodyned hologram and a single digital image includes both the first spatially-heterodyned hologram and the second spatially-heterodyned hologram.

  1. The Common Sense Guide to the Common Core: Teacher-Tested Tools for Implementation

    ERIC Educational Resources Information Center

    McKnight, Katherine

    2014-01-01

    Based on the original source document for the Common Core State Standards and tested by 1,000 educators in diverse classrooms across the country, these research-based tools will help readers examine their current practices and adapt existing curriculum. Each of the 40 tools is clearly presented, explained, and exemplified, guiding educators…

  2. Swine origin influenza (swine flu).

    PubMed

    Sebastian, Meghna R; Lodha, Rakesh; Kabra, S K

    2009-08-01

    Swine origin influenza was first recognized in the border area of Mexico and United States in April 2009 and during a short span of two months became the first pandemic. The currently circulating strain of swine origin influenza virus of the H1N1 strain has undergone triple reassortment and contains genes from the avian, swine and human viruses. It is transmitted by droplets or fomites. Incubation period is 2 to 7 days. Common clinical symptoms are indistinguishable by any viral respiratory illness, and include fever, cough, sore throat and myalgia. A feature seen more frequently with swine origin influenza is GI upset. Less than 10% of patients require hospitalization. Patients at risk of developing severe disease are - younger than five years, elderly, pregnant women, with chronic systemic illnesses, adolescents on aspirin. Of the severe manifestations of swine origin influenza, pneumonia and respiratory failure are the most common. Unusual symptoms reported are conjunctivitis, parotitis, hemophagocytic syndrome. Infants may present with fever and lethargy with no respiratory symptoms. Diagnosis is based on RT PCR, Viral culture or increasing neutralizing antibodies. Principle of treatment consist of isolation, universal precautions, good infection control practices, supportive care and use of antiviral drugs. Antiviral drugs effective against H1N1 virus include: oseltamivir and zamanavir. With good supportive care case fatality is less than 1%. Preventive measures include: social distancing, practicing respiratory etiquette, hand hygiene and use of chemoprohylaxis with antiviral drugs. Vaccine against H1N1 is not available at present, but will be available in near future.

  3. Role of origin and release location in pre-spawning distribution and movements of anadromous alewife

    USGS Publications Warehouse

    Frank, Holly J.; Mather, M. E.; Smith, Joseph M.; Muth, Robert M.; Finn, John T.

    2011-01-01

    Capturing adult anadromous fish that are ready to spawn from a self sustaining population and transferring them into a depleted system is a common fisheries enhancement tool. The behaviour of these transplanted fish, however, has not been fully evaluated. The movements of stocked and native anadromous alewife, Alosa pseudoharengus (Wilson), were monitored in the Ipswich River, Massachusetts, USA, to provide a scientific basis for this management tool. Radiotelemetry was used to examine the effect of origin (native or stocked) and release location (upstream or downstream) on distribution and movement during the spawning migration. Native fish remained in the river longer than stocked fish regardless of release location. Release location and origin influenced where fish spent time and how they moved. The spatial mosaic of available habitats and the entire trajectory of freshwater movements should be considered to restore effectively spawners that traverse tens of kilometres within coastal rivers.

  4. Origins of hydrogenosomes and mitochondria.

    PubMed

    Rotte, C; Henze, K; Müller, M; Martin, W

    2000-10-01

    Complete genome sequences for many oxygen-respiring mitochondria, as well as for some bacteria, leave no doubt that mitochondria are descendants of alpha-proteobacteria, a finding for which the endosymbiont hypothesis can easily account. Yet a wealth of data indicate that mitochondria and hydrogenosomes - the ATP-producing organelles of many anaerobic protists - share a common ancestry, a finding that traditional formulations of the endosymbiont hypothesis less readily accommodates. Available evidence suggests that a more in-depth understanding of the origins of eukaryotes and their organelles will hinge upon data from the genomes of protists that synthesize ATP without the need for oxygen.

  5. [Common anemias in neonatology].

    PubMed

    Humbert, J; Wacker, P

    1999-01-28

    We describe the four most common groups of neonatal anemia and their treatments, with particular emphasis on erythropoietin therapy. The hemolytic anemias include the ABO incompatibility (much more frequent, nowadays, than the Rh incompatibility, which has nearly disappeared following the use of anti-D immunoglobulin in postpartum Rh-negative mothers), hereditary spherocytosis and G-6-PD deficiency. Among hypoplastic anemias, that caused by Parvovirus B19 predominates, by far, over Diamond-Blackfan anemia, alpha-thalassemia and the rare sideroblastic anemias. "Hemorrhagic" anemias occur during twin-to-twin transfusions, or during feto-maternal transfusions. Finally, the multifactorial anemia of prematurity develops principally as a result of the rapid expansion of the blood volume in this group of patients. Erythropoietin therapy, often at doses much higher than those used in the adult, should be seriously considered in most cases of non-hypoplastic neonatal anemias, to minimise maximally the use of transfusions.

  6. The origins of lactase persistence in Europe.

    PubMed

    Itan, Yuval; Powell, Adam; Beaumont, Mark A; Burger, Joachim; Thomas, Mark G

    2009-08-01

    Lactase persistence (LP) is common among people of European ancestry, but with the exception of some African, Middle Eastern and southern Asian groups, is rare or absent elsewhere in the world. Lactase gene haplotype conservation around a polymorphism strongly associated with LP in Europeans (-13,910 C/T) indicates that the derived allele is recent in origin and has been subject to strong positive selection. Furthermore, ancient DNA work has shown that the--13,910*T (derived) allele was very rare or absent in early Neolithic central Europeans. It is unlikely that LP would provide a selective advantage without a supply of fresh milk, and this has lead to a gene-culture coevolutionary model where lactase persistence is only favoured in cultures practicing dairying, and dairying is more favoured in lactase persistent populations. We have developed a flexible demic computer simulation model to explore the spread of lactase persistence, dairying, other subsistence practices and unlinked genetic markers in Europe and western Asia's geographic space. Using data on--13,910*T allele frequency and farming arrival dates across Europe, and approximate Bayesian computation to estimate parameters of interest, we infer that the--13,910*T allele first underwent selection among dairying farmers around 7,500 years ago in a region between the central Balkans and central Europe, possibly in association with the dissemination of the Neolithic Linearbandkeramik culture over Central Europe. Furthermore, our results suggest that natural selection favouring a lactase persistence allele was not higher in northern latitudes through an increased requirement for dietary vitamin D. Our results provide a coherent and spatially explicit picture of the coevolution of lactase persistence and dairying in Europe.

  7. System Safety Common Cause Analysis

    1992-03-10

    The COMCAN fault tree analysis codes are designed to analyze complex systems such as nuclear plants for common causes of failure. A common cause event, or common mode failure, is a secondary cause that could contribute to the failure of more than one component and violates the assumption of independence. Analysis of such events is an integral part of system reliability and safety analysis. A significant common cause event is a secondary cause common tomore » all basic events in one or more minimal cut sets. Minimal cut sets containing events from components sharing a common location or a common link are called common cause candidates. Components share a common location if no barrier insulates any one of them from the secondary cause. A common link is a dependency among components which cannot be removed by a physical barrier (e.g.,a common energy source or common maintenance instructions).« less

  8. Multiple origins of life

    NASA Technical Reports Server (NTRS)

    Raup, D. M.; Valentine, J. W.

    1983-01-01

    There is some indication that life may have originated readily under primitive earth conditions. If there were multiple origins of life, the result could have been a polyphyletic biota today. Using simple stochastic models for diversification and extinction, we conclude: (1) the probability of survival of life is low unless there are multiple origins, and (2) given survival of life and given as many as 10 independent origins of life, the odds are that all but one would have gone extinct, yielding the monophyletic biota we have now. The fact of the survival of our particular form of life does not imply that it was unique or superior.

  9. Common Control System Vulnerability

    SciTech Connect

    Trent Nelson

    2005-12-01

    The Control Systems Security Program and other programs within the Idaho National Laboratory have discovered a vulnerability common to control systems in all sectors that allows an attacker to penetrate most control systems, spoof the operator, and gain full control of targeted system elements. This vulnerability has been identified on several systems that have been evaluated at INL, and in each case a 100% success rate of completing the attack paths that lead to full system compromise was observed. Since these systems are employed in multiple critical infrastructure sectors, this vulnerability is deemed common to control systems in all sectors. Modern control systems architectures can be considered analogous to today's information networks, and as such are usually approached by attackers using a common attack methodology to penetrate deeper and deeper into the network. This approach often is composed of several phases, including gaining access to the control network, reconnaissance, profiling of vulnerabilities, launching attacks, escalating privilege, maintaining access, and obscuring or removing information that indicates that an intruder was on the system. With irrefutable proof that an external attack can lead to a compromise of a computing resource on the organization's business local area network (LAN), access to the control network is usually considered the first phase in the attack plan. Once the attacker gains access to the control network through direct connections and/or the business LAN, the second phase of reconnaissance begins with traffic analysis within the control domain. Thus, the communications between the workstations and the field device controllers can be monitored and evaluated, allowing an attacker to capture, analyze, and evaluate the commands sent among the control equipment. Through manipulation of the communication protocols of control systems (a process generally referred to as ''reverse engineering''), an attacker can then map out the

  10. Vortices in Spatially Inhomogeneous Superfluids

    NASA Astrophysics Data System (ADS)

    Sheehy, Daniel E.; Radzihovsky, Leo

    2004-03-01

    Trapped degenerate Bose gases exhibit superfluidity with spatially nonuniform superfluid density. We study the vortex distribution in such rotating nonuniform superfluids, focusing particularly on deviations from a uniform distribution corresponding to an average rigid-body rotation. The origin of such deviations is the discrete way in which vortices impart angular momentum to the superfluid. This effect favors highest vortex density in regions where the superfluid density is most uniform, i.e., at the center of a trap, while tending to decrease the overall number of vortices. Supported by NSF DMR-0321848 and the Packard Foundation.

  11. COMMON ENVELOPE: ENTHALPY CONSIDERATION

    SciTech Connect

    Ivanova, N.; Chaichenets, S.

    2011-04-20

    In this Letter, we discuss a modification to the criterion for the common envelope (CE) event to result in envelope dispersion. We emphasize that the current energy criterion for the CE phase is not sufficient for an instability of the CE, nor for an ejection. However, in some cases, stellar envelopes undergo stationary mass outflows, which are likely to occur during the slow spiral-in stage of the CE event. We propose the condition for such outflows, in a manner similar to the currently standard {alpha}{sub CE}{lambda}-prescription but with an addition of P/{rho} term in the energy balance equation, accounting therefore for the enthalpy of the envelope rather than merely the gas internal energy. This produces a significant correction, which might help to dispense with an unphysically high value of energy efficiency parameter during the CE phase, currently required in the binary population synthesis studies to make the production of low-mass X-ray binaries with a black hole companion to match the observations.

  12. Building a North American Spatial Data Infrastructure

    USGS Publications Warehouse

    Coleman, D.J.; Nebert, D.D.

    1998-01-01

    This paper addresses the state of spatial data infrastructures within North America in late 1997. After providing some background underlying the philosophy and development of the SDI concept, the authors discuss effects of technology, institutions, and standardization that confront the cohesive implementation of a common infrastructure today. The paper concludes with a comparative framework and specific examples of elements and initiatives defining respective spatial data infrastructure initiatives in the United States and Canada.

  13. Spatial Structure of Evolutionary Models of Dialects in Contact.

    PubMed

    Murawaki, Yugo

    2015-01-01

    Phylogenetic models, originally developed to demonstrate evolutionary biology, have been applied to a wide range of cultural data including natural language lexicons, manuscripts, folktales, material cultures, and religions. A fundamental question regarding the application of phylogenetic inference is whether trees are an appropriate approximation of cultural evolutionary history. Their validity in cultural applications has been scrutinized, particularly with respect to the lexicons of dialects in contact. Phylogenetic models organize evolutionary data into a series of branching events through time. However, branching events are typically not included in dialectological studies to interpret the distributions of lexical terms. Instead, dialectologists have offered spatial interpretations to represent lexical data. For example, new lexical items that emerge in a politico-cultural center are likely to spread to peripheries, but not vice versa. To explore the question of the tree model's validity, we present a simple simulation model in which dialects form a spatial network and share lexical items through contact rather than through common ancestors. We input several network topologies to the model to generate synthetic data. We then analyze the synthesized data using conventional phylogenetic techniques. We found that a group of dialects can be considered tree-like even if it has not evolved in a temporally tree-like manner but has a temporally invariant, spatially tree-like structure. In addition, the simulation experiments appear to reproduce unnatural results observed in reconstructed trees for real data. These results motivate further investigation into the spatial structure of the evolutionary history of dialect lexicons as well as other cultural characteristics.

  14. Spatial Structure of Evolutionary Models of Dialects in Contact

    PubMed Central

    Murawaki, Yugo

    2015-01-01

    Phylogenetic models, originally developed to demonstrate evolutionary biology, have been applied to a wide range of cultural data including natural language lexicons, manuscripts, folktales, material cultures, and religions. A fundamental question regarding the application of phylogenetic inference is whether trees are an appropriate approximation of cultural evolutionary history. Their validity in cultural applications has been scrutinized, particularly with respect to the lexicons of dialects in contact. Phylogenetic models organize evolutionary data into a series of branching events through time. However, branching events are typically not included in dialectological studies to interpret the distributions of lexical terms. Instead, dialectologists have offered spatial interpretations to represent lexical data. For example, new lexical items that emerge in a politico-cultural center are likely to spread to peripheries, but not vice versa. To explore the question of the tree model’s validity, we present a simple simulation model in which dialects form a spatial network and share lexical items through contact rather than through common ancestors. We input several network topologies to the model to generate synthetic data. We then analyze the synthesized data using conventional phylogenetic techniques. We found that a group of dialects can be considered tree-like even if it has not evolved in a temporally tree-like manner but has a temporally invariant, spatially tree-like structure. In addition, the simulation experiments appear to reproduce unnatural results observed in reconstructed trees for real data. These results motivate further investigation into the spatial structure of the evolutionary history of dialect lexicons as well as other cultural characteristics. PMID:26221958

  15. Spatial Visualization by Realistic 3D Views

    ERIC Educational Resources Information Center

    Yue, Jianping

    2008-01-01

    In this study, the popular Purdue Spatial Visualization Test-Visualization by Rotations (PSVT-R) in isometric drawings was recreated with CAD software that allows 3D solid modeling and rendering to provide more realistic pictorial views. Both the original and the modified PSVT-R tests were given to students and their scores on the two tests were…

  16. Productive Taboos: Cultivating Spatialized Literacy Practices

    ERIC Educational Resources Information Center

    Vander Zanden, Sarah

    2015-01-01

    The fifth grade students in this project were part of a yearlong ethnographic study in an urban elementary school. They engaged in a student initiated inquiry project combining bakeries and mysteries, which culminated in the production of an original film. Situated in a socio-spatialized stance on literacy involving networks of participation and…

  17. DNA replication origins.

    PubMed

    Leonard, Alan C; Méchali, Marcel

    2013-10-01

    The onset of genomic DNA synthesis requires precise interactions of specialized initiator proteins with DNA at sites where the replication machinery can be loaded. These sites, defined as replication origins, are found at a few unique locations in all of the prokaryotic chromosomes examined so far. However, replication origins are dispersed among tens of thousands of loci in metazoan chromosomes, thereby raising questions regarding the role of specific nucleotide sequences and chromatin environment in origin selection and the mechanisms used by initiators to recognize replication origins. Close examination of bacterial and archaeal replication origins reveals an array of DNA sequence motifs that position individual initiator protein molecules and promote initiator oligomerization on origin DNA. Conversely, the need for specific recognition sequences in eukaryotic replication origins is relaxed. In fact, the primary rule for origin selection appears to be flexibility, a feature that is modulated either by structural elements or by epigenetic mechanisms at least partly linked to the organization of the genome for gene expression.

  18. Religion: Origins and Evolution.

    ERIC Educational Resources Information Center

    Meyer, John K.

    2004-01-01

    We present the purpose of study of the origins and development of affect-relevant and religion-relevant hypotheses, and conjectured prediction of proto-religious sequences in pre-human anthropoids and primitive human cultures. We anticipate more comprehensive study of modern cultural outcomes of these origins and developments.

  19. Chemical Origins of Life

    ERIC Educational Resources Information Center

    Fox, J. Lawrence

    1972-01-01

    Reviews ideas and evidence bearing on the origin of life. Shows that evidence to support modifications of Oparin's theories of the origin of biological constituents from inorganic materials is accumulating, and that the necessary components are readily obtained from the simple gases found in the universe. (AL)

  20. The Moon's Origin.

    ERIC Educational Resources Information Center

    Cadogan, Peter

    1983-01-01

    Presents findings and conclusions about the origin of the moon, favoring the capture hypothesis of lunar origin. Advantage of the hypothesis is that it allows the moon to have been formed elsewhere, specifically in a hotter part of the solar nebula, accounting for chemical differences between earth and moon. (JN)

  1. Originalism in the Classroom

    ERIC Educational Resources Information Center

    Forte, David F.

    2011-01-01

    In this article, the author provides a detailed legal history of originalism and investigates whether, and to what extent, originalism is a part of law school teaching on the Constitution. He shares the results of an examination of the leading constitutional law textbooks used in the top fifty law schools and a selection of responses gathered from…

  2. The Growth of Originalism

    ERIC Educational Resources Information Center

    Bork, Robert H.

    2011-01-01

    The latest episode in the long-running struggle for control of the Constitution, and the political power that goes with it, is playing out in the federal courts in California. The contending philosophies are originalism, which holds that the Constitution should be read as it was originally understood by the framers and ratifiers, and the congeries…

  3. Modelling spatial oscillations in soil borehole bacteria.

    PubMed

    McGuinness, M J; Cribbin, L B; Winstanley, H F; Fowler, A C

    2014-12-21

    Spatial oscillations in groundwater contaminant concentrations can be successfully explained by consideration of a competitive microbial community in conditions of poor nutrient supply, in which the effects of spatial diffusion of the nutrient sources are included. In previous work we showed that the microbial competition itself allowed oscillations to occur, and, in common with other reaction-diffusion systems, the addition of spatial diffusion transforms these temporal oscillations into travelling waves, sometimes chaotic. We therefore suggest that irregular chemical profiles sometimes found in contaminant plume borehole profiles may be a consequence of this competition.

  4. Memoz - Spatial Weblogging

    NASA Astrophysics Data System (ADS)

    Hoem, Jon

    The article argues that spatial webpublishing has influence on weblogging, and calls for a revision of the current weblog definition. The weblog genre should be able to incorporate spatial representation, not only the sequential ordering of articles. The article show examples of different spatial forms, including material produced in Memoz (MEMory OrganiZer).

  5. Effects of spatial resolution

    NASA Technical Reports Server (NTRS)

    Abrams, M.

    1982-01-01

    Studies of the effects of spatial resolution on extraction of geologic information are woefully lacking but spatial resolution effects can be examined as they influence two general categories: detection of spatial features per se; and the effects of IFOV on the definition of spectral signatures and on general mapping abilities.

  6. Spatial Language Learning

    ERIC Educational Resources Information Center

    Fu, Zhengling

    2016-01-01

    Spatial language constitutes part of the basic fabric of language. Although languages may have the same number of terms to cover a set of spatial relations, they do not always do so in the same way. Spatial languages differ across languages quite radically, thus providing a real semantic challenge for second language learners. The essay first…

  7. A Review of Spatial Methods in Epidemiology, 2000–2010

    PubMed Central

    Auchincloss, Amy H.; Gebreab, Samson Y.; Mair, Christina; Roux, Ana V. Diez

    2013-01-01

    Understanding the impact of place on health is a key element of epidemiologic investigation, and numerous tools are being employed for analysis of spatial health-related data. This review documents the huge growth in spatial epidemiology, summarizes the tools that have been employed, and provides in-depth discussion of several methods. Relevant research articles for 2000–2010 from seven epidemiology journals were included if the study utilized a spatial analysis method in primary analysis (n = 207). Results summarized frequency of spatial methods and substantive focus; graphs explored trends over time. The most common spatial methods were distance calculations, spatial aggregation, clustering, spatial smoothing and interpolation, and spatial regression. Proximity measures were predominant and were applied primarily to air quality and climate science and resource access studies. The review concludes by noting emerging areas that are likely to be important to future spatial analysis in public health. PMID:22429160

  8. Plane-wave decomposition of spatially random fields.

    PubMed

    Nguyen, Tan H; Majeed, Hassaan; Popescu, Gabriel

    2015-04-01

    We investigate the uniqueness of the plane-wave decomposition of temporally deterministic, spatially random fields. Specifically, we consider the decomposition of spatially ergodic and, thus, statistically homogeneous fields. We show that when the spatial power spectrum is injective, the plane waves are the only possible coherent modes. Furthermore, the randomness of such fields originates in the spatial spectral phase, i.e., the phase associated with the coefficients of each plane wave in the expansion. By contrast, the spectral amplitude is deterministic and is specified by the spatial power spectrum. We end with a discussion showing how the results can be translated in full to the time domain.

  9. D1/D5 dopamine receptors modulate spatial memory formation.

    PubMed

    da Silva, Weber C N; Köhler, Cristiano C; Radiske, Andressa; Cammarota, Martín

    2012-02-01

    We investigated the effect of the intra-CA1 administration of the D1/D5 receptor antagonist SCH23390 and the D1/D5 receptor agonist SKF38393 on spatial memory in the water maze. When given immediately, but not 3h after training, SCH23390 hindered long-term spatial memory formation without affecting non-spatial memory or the normal functionality of the hippocampus. On the contrary, post-training infusion of SKF38393 enhanced retention and facilitated the spontaneous recovery of the original spatial preference after reversal learning. Our findings demonstrate that hippocampal D1/D5 receptors play an essential role in spatial memory processing.

  10. Automated Filtering of Common Mode Artifacts in Multi-Channel Physiological Recordings

    PubMed Central

    Kelly, John W.; Siewiorek, Daniel P.; Smailagic, Asim; Wang, Wei

    2014-01-01

    The removal of spatially correlated noise is an important step in processing multi-channel recordings. Here, a technique termed the adaptive common average reference (ACAR) is presented as an effective and simple method for removing this noise. The ACAR is based on a combination of the well-known common average reference (CAR) and an adaptive noise canceling (ANC) filter. In a convergent process, the CAR provides a reference to an ANC filter, which in turn provides feedback to enhance the CAR. This method was effective on both simulated and real data, outperforming the standard CAR when the amplitude or polarity of the noise changes across channels. In many cases the ACAR even outperformed independent component analysis (ICA). On 16 channels of simulated data the ACAR was able to attenuate up to approximately 290 dB of noise and could improve signal quality if the original SNR was as high as 5 dB. With an original SNR of 0 dB, the ACAR improved signal quality with only two data channels and performance improved as the number of channels increased. It also performed well under many different conditions for the structure of the noise and signals. Analysis of contaminated electrocorticographic (ECoG) recordings further showed the effectiveness of the ACAR. PMID:23708770

  11. Spatial prediction and ordinary kriging

    SciTech Connect

    Cressie, N.

    1988-05-01

    Suppose data /Z(s/sub i/):i = 1,...,n/ are observed at spatial locations /s/sub i/:i = 1,...,n/. From these data, an unknown Z(s/sub 0/) is to be predicted at a known location s/sub 0/, or, if Z(s/sub 0/) has a component of measurement error, then a smooth version S(s/sub 0/) should be predicted. This article considers the assumptions needed to carry out the spatial prediction using ordinary kriging, and looks at how nugget effect, range, and sill of the variogram affect the predictor. It is concluded that certain commonly held interpretations of these variogram parameters should be modified.

  12. Spatially Characterizing Effective Timber Supply

    NASA Technical Reports Server (NTRS)

    Berry, J. K.; Sailor, J.

    1982-01-01

    The structure of a computer-oriented cartographic model for assessing roundwood supply for generation of base load electricity is discussed. The model provides an analytical procedure for coupling spatial information of harvesting economics and owner willingness to sell stumpages. Supply is characterized in terms of standing timber; of accessibility considering various harvesting and hauling factors; and of availability as affected by ownership and residential patterns. Factors governing accessibility to timber include effective harvesting distance to haulic roads as modified by barriers and slopes. Haul distance is expressed in units that take into account the relative ease of travel along various road types to a central processing facility. Areas of accessible timber are grouped into spatial units, termed 'timbersheds', of common access to particular haul road segments that belong to unique 'transport zones'. Timber availability considerations include size of ownership parcels, housing density and excluded areas. The analysis techniques are demonstrated for a cartographic data base in western Massachusetts.

  13. Joint Service Common Operating Environment (COE) Common Geographic Information System functional requirements

    SciTech Connect

    Meitzler, W.D.

    1992-06-01

    In the context of this document and COE, the Geographic Information Systems (GIS) are decision support systems involving the integration of spatially referenced data in a problem solving environment. They are digital computer systems for capturing, processing, managing, displaying, modeling, and analyzing geographically referenced spatial data which are described by attribute data and location. The ability to perform spatial analysis and the ability to combine two or more data sets to create new spatial information differentiates a GIS from other computer mapping systems. While the CCGIS allows for data editing and input, its primary purpose is not to prepare data, but rather to manipulate, analyte, and clarify it. The CCGIS defined herein provides GIS services and resources including the spatial and map related functionality common to all subsystems contained within the COE suite of C4I systems. The CCGIS, which is an integral component of the COE concept, relies on the other COE standard components to provide the definition for other support computing services required.

  14. Designing the Microbial Research Commons

    SciTech Connect

    Uhlir, Paul F.

    2011-10-01

    Recent decades have witnessed an ever-increasing range and volume of digital data. All elements of the pillars of science--whether observation, experiment, or theory and modeling--are being transformed by the continuous cycle of generation, dissemination, and use of factual information. This is even more so in terms of the re-using and re-purposing of digital scientific data beyond the original intent of the data collectors, often with dramatic results. We all know about the potential benefits and impacts of digital data, but we are also aware of the barriers, the challenges in maximizing the access, and use of such data. There is thus a need to think about how a data infrastructure can enhance capabilities for finding, using, and integrating information to accelerate discovery and innovation. How can we best implement an accessible, interoperable digital environment so that the data can be repeatedly used by a wide variety of users in different settings and with different applications? With this objective: to use the microbial communities and microbial data, literature, and the research materials themselves as a test case, the Board on Research Data and Information held an International Symposium on Designing the Microbial Research Commons at the National Academy of Sciences in Washington, DC on 8-9 October 2009. The symposium addressed topics such as models to lower the transaction costs and support access to and use of microbiological materials and digital resources from the perspective of publicly funded research, public-private interactions, and developing country concerns. The overall goal of the symposium was to stimulate more research and implementation of improved legal and institutional models for publicly funded research in microbiology.

  15. No ownership of common factors.

    PubMed

    Tryon, Warren W; Tryon, Georgiana Shick

    2011-01-01

    Comments on the original article, "The efficacy of psychodynamic psychotherapy," by J. Shedler (see record 2010-02208-012). Shedler's informative article raised several issues worthy of comment. His choice of the word distinctive (p. 98) in describing aspects of psychodynamic technique is open to at least two interpretations. On the one hand, distinctive can have a qualitative meaning and indicate the presence of a characteristic that is not shared. For example, a sign in the Bronx Zoo distinguishes birds from all other creatures as follows: "If it has feathers it's a bird, if it doesn't, it isn't." On the other hand, distinctive can have a quantitative meaning and indicate that one practice has more of a common element than another practice. Careful reading of Shedler's article and the article by Blagys and Hilsenroth (2000) that forms the basis of the "seven features [that] reliably distinguished psychodynamic therapies from other therapies" (Shedler, 2010, p. 98) shows that Shedler subscribes to the latter, quantitative, definition of distinctive. In other words, the seven features he presented are present in both psychodynamic therapies and the cognitive-behavioral therapies to which he compares them. For example, although Shedler did not mention it, dialectical behavior therapy explicitly focuses on six of the seven features, namely, "focus on affect and expression of emotion," "exploration of attempts to avoid distressing thoughts and feelings," "identification of recurring themes and patterns," "discussion of past experience," "focus on interpersonal relations," and "focus on the therapy relationship" (Shedler, 2010, p. 99). However, in the articles that Blagys and Hilsenroth reviewed, psychodyamic therapists engaged in more of these behaviors than did cognitive-behavioral therapists. PMID:21299265

  16. Approximation-based common principal component for feature extraction in multi-class brain-computer interfaces.

    PubMed

    Hoang, Tuan; Tran, Dat; Huang, Xu

    2013-01-01

    Common Spatial Pattern (CSP) is a state-of-the-art method for feature extraction in Brain-Computer Interface (BCI) systems. However it is designed for 2-class BCI classification problems. Current extensions of this method to multiple classes based on subspace union and covariance matrix similarity do not provide a high performance. This paper presents a new approach to solving multi-class BCI classification problems by forming a subspace resembled from original subspaces and the proposed method for this approach is called Approximation-based Common Principal Component (ACPC). We perform experiments on Dataset 2a used in BCI Competition IV to evaluate the proposed method. This dataset was designed for motor imagery classification with 4 classes. Preliminary experiments show that the proposed ACPC feature extraction method when combining with Support Vector Machines outperforms CSP-based feature extraction methods on the experimental dataset.

  17. Can a Place of Origin of the Main Cystic Fibrosis Mutations Be Identified?

    PubMed Central

    Mateu, Eva; Calafell, Francesc; Ramos, Maria Dolors; Casals, Teresa; Bertranpetit, Jaume

    2002-01-01

    The genetic background of the mutations that most often cause cystic fibrosis (CF) is different from that of non-CF chromosomes in populations of European origin. It is not known whether these haplotype backgrounds could be found at high frequencies in populations in which CF is, at present, not common; such populations would be candidates for the place of origin of CF mutations. An analysis of haplotypes of CF transmembrane conductance regulator, together with their variation in specific CF chromosomes, in a worldwide survey of normal chromosomes shows (1) a very low frequency or absence of the most common CF haplotypes in all populations analyzed and (2) a strong genetic variability and divergence, among various populations, of the chromosomes that carry disease-causing mutations. The depth of the gene genealogy associated with disease-causing mutations may be greater than that of the evolutionary process that gave rise to present-day human populations. The concept of “population of origin” lacks either spatial or temporal meaning for mutations that are likely to have been present in Europeans before the ethnogenesis of present populations; subsequent population processes may have erased the traces of their geographic origin. PMID:11713719

  18. Effects of spatial configurations on the resolution of spatial working memory.

    PubMed

    Mutluturk, Aysu; Boduroglu, Aysecan

    2014-11-01

    Recent research demonstrated that people represent spatial information configurally and preservation of configural cues at retrieval helps memory for spatial locations (Boduroğlu & Shah, Memory & Cognition, 37(8), 1120-1131 2009; Jiang, Olson, & Chun, Journal of Experimental Psychology: Learning, Memory, and Cognition, 26(3), 683-702 2000). The present study investigated the effects of spatial configurations on the resolution of individual location representations. In an open-ended task, participants first studied a set of object locations (three and five locations). Then, in a test display where available configural cues were manipulated, participants were asked to determine the original location of a target object whose color was auditorially cued. The difference between the reported location and the original location was taken as a measure of spatial resolution. In three experiments, we consistently observed that the resolution of spatial representations was facilitated by the preservation of spatial configurations at retrieval. We argue that participants may be using available configural cues in conjunction with the summary representation (e.g., centroid) of the original display in the computation of target locations. PMID:24939236

  19. The Complex Origins of the Registrar

    ERIC Educational Resources Information Center

    Smith, Shawn C.

    2012-01-01

    The origins of the registrar's office are complex. According to common tradition, the registrar was, or evolved from, the office of the beadle (sometimes referred to as "bedel") in the medieval university. This tradition is incorrect; the story is more complex. The beadle sometimes performed functions similar to those performed by the modern-day…

  20. Concise Historical Origins of Selected Registrar's Terms.

    ERIC Educational Resources Information Center

    Hudson, Paul Stephen

    1989-01-01

    The history and etymology of terms commonly used by registrars in maintaining records are summarized, with focus on their Latin origins. Terms include record, copy, file, rolls, register, data, enrollment, total, census, notary, minutes, office, delegate, catalog, schedule, procedure, memorandum, authentic, seal, signature, diploma, certify, and…

  1. Parcellating connectivity in spatial maps.

    PubMed

    Baldassano, Christopher; Beck, Diane M; Fei-Fei, Li

    2015-01-01

    A common goal in biological sciences is to model a complex web of connections using a small number of interacting units. We present a general approach for dividing up elements in a spatial map based on their connectivity properties, allowing for the discovery of local regions underlying large-scale connectivity matrices. Our method is specifically designed to respect spatial layout and identify locally-connected clusters, corresponding to plausible coherent units such as strings of adjacent DNA base pairs, subregions of the brain, animal communities, or geographic ecosystems. Instead of using approximate greedy clustering, our nonparametric Bayesian model infers a precise parcellation using collapsed Gibbs sampling. We utilize an infinite clustering prior that intrinsically incorporates spatial constraints, allowing the model to search directly in the space of spatially-coherent parcellations. After showing results on synthetic datasets, we apply our method to both functional and structural connectivity data from the human brain. We find that our parcellation is substantially more effective than previous approaches at summarizing the brain's connectivity structure using a small number of clusters, produces better generalization to individual subject data, and reveals functional parcels related to known retinotopic maps in visual cortex. Additionally, we demonstrate the generality of our method by applying the same model to human migration data within the United States. This analysis reveals that migration behavior is generally influenced by state borders, but also identifies regional communities which cut across state lines. Our parcellation approach has a wide range of potential applications in understanding the spatial structure of complex biological networks.

  2. Cofunctional Subpathways Were Regulated by Transcription Factor with Common Motif, Common Family, or Common Tissue

    PubMed Central

    Su, Fei; Shang, Desi; Xu, Yanjun; Feng, Li; Yang, Haixiu; Liu, Baoquan; Su, Shengyang; Chen, Lina; Li, Xia

    2015-01-01

    Dissecting the characteristics of the transcription factor (TF) regulatory subpathway is helpful for understanding the TF underlying regulatory function in complex biological systems. To gain insight into the influence of TFs on their regulatory subpathways, we constructed a global TF-subpathways network (TSN) to analyze systematically the regulatory effect of common-motif, common-family, or common-tissue TFs on subpathways. We performed cluster analysis to show that the common-motif, common-family, or common-tissue TFs that regulated the same pathway classes tended to cluster together and contribute to the same biological function that led to disease initiation and progression. We analyzed the Jaccard coefficient to show that the functional consistency of subpathways regulated by the TF pairs with common motif, common family, or common tissue was significantly greater than the random TF pairs at the subpathway level, pathway level, and pathway class level. For example, HNF4A (hepatocyte nuclear factor 4, alpha) and NR1I3 (nuclear receptor subfamily 1, group I, member 3) were a pair of TFs with common motif, common family, and common tissue. They were involved in drug metabolism pathways and were liver-specific factors required for physiological transcription. In short, we inferred that the cofunctional subpathways were regulated by common-motif, common-family, or common-tissue TFs. PMID:26688819

  3. Temporal and Spatial Variations in the Twinning Rate in Norway.

    PubMed

    Fellman, Johan

    2016-08-01

    Strong geographical variations have been noted in the twinning rate (TWR). In general, the rate is high among people of African origin, intermediate among Europeans, and low among most Asiatic populations. In Europe, there tends to be a south-north cline, with a progressive increase in the TWR from south to north and a minimum around the Basque provinces. The highest TWRs in Europe have been found among the Nordic populations. Furthermore, within larger populations, small isolated subpopulations have been identified to have extreme, mainly high, TWRs. In the study of the temporal variation of the TWR in Norway, we consider the period from 1900 to 2014. The regional variation of the TWR in Norway is analyzed for the different counties for two periods, 1916-1926 and 1960-1988. Heterogeneity between the regional TWRs in Norway during 1916-1926 was found, but the goodness of fit for the alternative spatial models was only slight. The optimal regression model for the TWR in Norway has the longitude and its square as regressors. According to this model, the spatial variation is distributed in a west-east direction. For 1960-1988, no significant regional variation was observed. One may expect that the environmental and genetic differences between the counties in Norway have disappeared and that the regional TWRs have converged towards a common low level. PMID:27339822

  4. Temporal and Spatial Variations in the Twinning Rate in Norway.

    PubMed

    Fellman, Johan

    2016-08-01

    Strong geographical variations have been noted in the twinning rate (TWR). In general, the rate is high among people of African origin, intermediate among Europeans, and low among most Asiatic populations. In Europe, there tends to be a south-north cline, with a progressive increase in the TWR from south to north and a minimum around the Basque provinces. The highest TWRs in Europe have been found among the Nordic populations. Furthermore, within larger populations, small isolated subpopulations have been identified to have extreme, mainly high, TWRs. In the study of the temporal variation of the TWR in Norway, we consider the period from 1900 to 2014. The regional variation of the TWR in Norway is analyzed for the different counties for two periods, 1916-1926 and 1960-1988. Heterogeneity between the regional TWRs in Norway during 1916-1926 was found, but the goodness of fit for the alternative spatial models was only slight. The optimal regression model for the TWR in Norway has the longitude and its square as regressors. According to this model, the spatial variation is distributed in a west-east direction. For 1960-1988, no significant regional variation was observed. One may expect that the environmental and genetic differences between the counties in Norway have disappeared and that the regional TWRs have converged towards a common low level.

  5. Hierarchical spatial structure of stream fish colonization and extinction

    USGS Publications Warehouse

    Hitt, N.P.; Roberts, J.H.

    2012-01-01

    Spatial variation in extinction and colonization is expected to influence community composition over time. In stream fish communities, local species richness (alpha diversity) and species turnover (beta diversity) are thought to be regulated by high extinction rates in headwater streams and high colonization rates in downstream areas. We evaluated the spatiotemporal structure of fish communities in streams originally surveyed by Burton and Odum 1945 (Ecology 26: 182-194) in Virginia, USA and explored the effects of species traits on extinction and colonization dynamics. We documented dramatic changes in fish community structure at both the site and stream scales. Of the 34 fish species observed, 20 (59%) were present in both time periods, but 11 (32%) colonized the study area and three (9%) were extirpated over time. Within streams, alpha diversity increased in two of three streams but beta diversity decreased dramatically in all streams due to fish community homogenization caused by colonization of common species and extirpation of rare species. Among streams, however, fish communities differentiated over time. Regression trees indicated that reproductive life-history traits such as spawning mound construction, associations with mound-building species, and high fecundity were important predictors of species persistence or colonization. Conversely, native fishes not associated with mound-building exhibited the highest rates of extirpation from streams. Our results demonstrate that stream fish colonization and extinction dynamics exhibit hierarchical spatial structure and suggest that mound-building fishes serve as keystone species for colonization of headwater streams.

  6. Triboluminescence Spectroscopy of Common Candies.

    ERIC Educational Resources Information Center

    Angelos, Rebecca; And Others

    1979-01-01

    Spectroscopic aspects of the triboluminescence spectra of three Lifesaver candies are discussed. Emphasis is placed on the experimental methods of measuring spectra and origins of the tribaluminescence. (SA)

  7. Spatial services grid

    NASA Astrophysics Data System (ADS)

    Cao, Jian; Li, Qi; Cheng, Jicheng

    2005-10-01

    This paper discusses the concept, key technologies and main application of Spatial Services Grid. The technologies of Grid computing and Webservice is playing a revolutionary role in studying the spatial information services. The concept of the SSG (Spatial Services Grid) is put forward based on the SIG (Spatial Information Grid) and OGSA (open grid service architecture). Firstly, the grid computing is reviewed and the key technologies of SIG and their main applications are reviewed. Secondly, the grid computing and three kinds of SIG (in broad sense)--SDG (spatial data grid), SIG (spatial information grid) and SSG (spatial services grid) and their relationships are proposed. Thirdly, the key technologies of the SSG (spatial services grid) is put forward. Finally, three representative applications of SSG (spatial services grid) are discussed. The first application is urban location based services gird, which is a typical spatial services grid and can be constructed on OGSA (Open Grid Services Architecture) and digital city platform. The second application is region sustainable development grid which is the key to the urban development. The third application is Region disaster and emergency management services grid.

  8. [Hypotension from endocrine origin].

    PubMed

    Vantyghem, Marie-Christine; Douillard, Claire; Balavoine, Anne-Sophie

    2012-11-01

    Hypotension is defined by a low blood pressure either permanently or only in upright posture (orthostatic hypotension). In contrast to hypertension, there is no threshold defining hypotension. The occurrence of symptoms for systolic and diastolic measurements respectively below 90 and 60 mm Hg establishes the diagnosis. Every acute hypotensive event should suggest shock, adrenal failure or an iatrogenic cause. Chronic hypotension from endocrine origin may be linked to adrenal failure from adrenal or central origin, isolated hypoaldosteronism, pseudohypoaldosteronism, pheochromocytoma, neuro-endocrine tumors (carcinoïd syndrome) or diabetic dysautonomia. Hypotension related to hypoaldosteronism associates low blood sodium and above all high blood potassium levels. They are generally classified according to their primary (hyperreninism) or secondary (hyporeninism) adrenal origin. Isolated primary hypoaldosteronisms are rare in adults (intensive care unit, selective injury of the glomerulosa area) and in children (aldosterone synthase deficiency). Isolated secondary hypoaldosteronism is related to mellitus diabetes complicated with dysautonomia, kidney failure, age, iatrogenic factors, and HIV infections. In both cases, they can be associated to glucocorticoid insufficiency from primary adrenal origin (adrenal failure of various origins with hyperreninism, among which congenital 21 hydroxylase deficiency with salt loss) or from central origin (hypopituitarism with hypo-reninism). Pseudohypoaldosteronisms are linked to congenital (type 1 pseudohypoaldosteronism) or acquired states of resistance to aldosterone. Acquired salt losses from enteric (total colectomy with ileostomy) or renal (interstitial nephropathy, Bartter and Gitelman syndromes…) origin might be responsible for hypotension and are associated with hyperreninism-hyperaldosteronism. Hypotension is a rare manifestation of pheochromocytomas, especially during surgical removal when the patient has not been

  9. Committee Handbook for Common Learning.

    ERIC Educational Resources Information Center

    Burton, Sharon; And Others

    This manual on general education and common learning was prepared by and for the Dallas County Community College District's (DCCCD's) Committees for Common Learning (CCL's), which have been charged with reviewing the DCCCD's general education curriculum and degree requirements and making recommendations concerning common learning requirements and…

  10. Culture and the Common School

    ERIC Educational Resources Information Center

    Feinberg, Walter

    2007-01-01

    This essay addresses the question: given the flattening out of the cultural hierarchy that was the vestige of colonialism and nation-building, is there anything that might be uniquely common about the common school in this postmodern age? By "uniquely common" I do not mean those subjects that all schools might teach, such as reading or arithmetic.…

  11. Common Core State Standards 101

    ERIC Educational Resources Information Center

    Rothman, Robert

    2013-01-01

    The Common Core State Standards (CCSS) represent the first time that nearly every state has set common expectations for what students should know and be able to do. In the past, each state set its own standards, and the results varied widely. And while states collectively developed these common standards, decisions about the curriculum and…

  12. Retroperitoneal Bronchogenic Cyst Originating from Diaphragmatic Crura.

    PubMed

    Herek, Duygu; Erbiş, Halil; Kocyigit, Ali; Yagci, Ahmet Baki

    2015-12-01

    Bronchogenic cyst is a benign lesion which is commonly seen in the posterior mediastinum. Diaphragmatic origin in retroperitoneum is an unusual location for a bronchogenic cyst. Cross-sectional imaging modalities describe the origin and content of the cyst evidently. Magnetic resonance (MR) images of a 42-year-old male patient who attended ER with back pain revealed a huge retroperitoneal complicated bronchogenic cyst arising from the diaphragm and surrounding the abdominal aorta anteriorly. Bronchogenic cysts in the retroperitoneum rarely originate from the diaphragm and should be kept in mind in the differential diagnoses of abdominal cystic lesions. MR imaging (MRI) is superior to other imaging techniques such as computerized tomography (CT) in detecting the origin and content of these cystic lesions.

  13. Reptile Critical Care and Common Emergencies.

    PubMed

    Music, Meera Kumar; Strunk, Anneliese

    2016-05-01

    Reptile emergencies are an important part of exotic animal critical care, both true emergencies and those perceived as emergencies by owners. The most common presentations for reptile emergencies are addressed here, with information on differential diagnoses, helpful diagnostics, and approach to treatment. In many cases, reptile emergencies are actually acute presentations originating from a chronic problem, and the treatment plan must include both clinical treatment and addressing husbandry and dietary deficiencies at home. Accurate owner expectations must be set in order to have owner compliance to long-term treatment plans. PMID:27131163

  14. Reptile Critical Care and Common Emergencies.

    PubMed

    Music, Meera Kumar; Strunk, Anneliese

    2016-05-01

    Reptile emergencies are an important part of exotic animal critical care, both true emergencies and those perceived as emergencies by owners. The most common presentations for reptile emergencies are addressed here, with information on differential diagnoses, helpful diagnostics, and approach to treatment. In many cases, reptile emergencies are actually acute presentations originating from a chronic problem, and the treatment plan must include both clinical treatment and addressing husbandry and dietary deficiencies at home. Accurate owner expectations must be set in order to have owner compliance to long-term treatment plans.

  15. Common ocular problems of Shin Tzu dogs.

    PubMed

    Christmas, R E

    1992-06-01

    In recent years the Shih Tzu has become a popular breed of dog. It has a number of serious diseases of the eye which are not being recognized by breeders, owners, and sometimes veterinarians. The purpose of this communication is to assist veterinarians in recognizing and treating, where possible, some of the common ocular problems of this breed, including medial canthal entropion, various trichiasis problems, dermoids, third eyelid gland prolapse, chronic keratitis and corneal ulcers, progressive retinal atrophy, vitreal syneresis, and retinal detachment. Because most of the problems are inherited or of suspected genetic origin, breeders should receive genetic counselling from their veterinarian.

  16. Spatial properties of koniocellular cells in the lateral geniculate nucleus of the marmoset Callithrix jacchus

    PubMed Central

    White, Andrew J R; Solomon, Samuel G; Martin, Paul R

    2001-01-01

    The receptive field dimensions, contrast sensitivity and linearity of spatial summation of koniocellular (KC), parvocellular (PC) and magnocellular (MC) cells in the lateral geniculate nucleus (LGN) of 11 adult marmosets were measured using achromatic sinusoidal gratings. The receptive field centre diameter of cells in each (PC, KC and MC) class increases with distance from the fovea. There is substantial overlap in centre size between the three cell classes at any eccentricity, but the PC cells have, on average, the smallest centres and the KC cells have the largest. Some PC and KC cells did not respond at all to the grating stimulus. The contrast sensitivity of the receptive field centre mechanism in KC cells decreases in proportion to the centre area. A similar trend was seen for the surround mechanism. These characteristics are common to PC and MC cells, suggesting that they originate at an early stage of visual processing in the retina. The KC cells showed, in general, lower peak evoked discharge rates than PC or MC cells. The spontaneous discharge rate of KC cells was lower than that of PC cells and similar to that of MC cells. The majority of cells in all divisions of the LGN show linear spatial summation. A few cells did show non-linear spatial summation; these cells were predominantly located in the MC and ventral KC layers. The ventral KC layers below and between the MC layers contain cells with larger and more transiently responding receptive fields than cells in the more dorsal KC layers. We conclude that many of the contrast-dependent spatial properties of cells in the marmoset LGN are common to PC, MC and KC cells. The main difference between KC cells and the other two classes is that there is more variability in their response properties, and they are less responsive to high spatial frequencies. PMID:11389209

  17. Spatial regulation and organization of DNA replication within the nucleus.

    PubMed

    Natsume, Toyoaki; Tanaka, Tomoyuki U

    2010-01-01

    Duplication of chromosomal DNA is a temporally and spatially regulated process. The timing of DNA replication initiation at various origins is highly coordinated; some origins fire early and others late during S phase. Moreover, inside the nuclei, the bulk of DNA replication is physically organized in replication factories, consisting of DNA polymerases and other replication proteins. In this review article, we discuss how DNA replication is organized and regulated spatially within the nucleus and how this spatial organization is linked to temporal regulation. We focus on DNA replication in budding yeast and fission yeast and, where applicable, compare yeast DNA replication with that in bacteria and metazoans.

  18. Spatial dynamics of ecological public goods.

    PubMed

    Wakano, Joe Yuichiro; Nowak, Martin A; Hauert, Christoph

    2009-05-12

    The production, consumption, and exploitation of common resources ranging from extracellular products in microorganisms to global issues of climate change refer to public goods interactions. Individuals can cooperate and sustain common resources at some cost or defect and exploit the resources without contributing. This generates a conflict of interest, which characterizes social dilemmas: Individual selection favors defectors, but for the community, it is best if everybody cooperates. Traditional models of public goods do not take into account that benefits of the common resource enable cooperators to maintain higher population densities. This leads to a natural feedback between population dynamics and interaction group sizes as captured by "ecological public goods." Here, we show that the spatial evolutionary dynamics of ecological public goods in "selection-diffusion" systems promotes cooperation based on different types of pattern formation processes. In spatial settings, individuals can migrate (diffuse) to populate new territories. Slow diffusion of cooperators fosters aggregation in highly productive patches (activation), whereas fast diffusion enables defectors to readily locate and exploit these patches (inhibition). These antagonistic forces promote coexistence of cooperators and defectors in static or dynamic patterns, including spatial chaos of ever-changing configurations. The local environment of cooperators and defectors is shaped by the production or consumption of common resources. Hence, diffusion-induced self-organization into spatial patterns not only enhances cooperation but also provides simple mechanisms for the spontaneous generation of habitat diversity, which denotes a crucial determinant of the viability of ecological systems.

  19. Spatial capture-recapture

    USGS Publications Warehouse

    Royle, J. Andrew; Chandler, Richard B.; Sollmann, Rahel; Gardner, Beth

    2013-01-01

    Spatial Capture-Recapture provides a revolutionary extension of traditional capture-recapture methods for studying animal populations using data from live trapping, camera trapping, DNA sampling, acoustic sampling, and related field methods. This book is a conceptual and methodological synthesis of spatial capture-recapture modeling. As a comprehensive how-to manual, this reference contains detailed examples of a wide range of relevant spatial capture-recapture models for inference about population size and spatial and temporal variation in demographic parameters. Practicing field biologists studying animal populations will find this book to be a useful resource, as will graduate students and professionals in ecology, conservation biology, and fisheries and wildlife management.

  20. Spatially embedded random networks.

    PubMed

    Barnett, L; Di Paolo, E; Bullock, S

    2007-11-01

    Many real-world networks analyzed in modern network theory have a natural spatial element; e.g., the Internet, social networks, neural networks, etc. Yet, aside from a comparatively small number of somewhat specialized and domain-specific studies, the spatial element is mostly ignored and, in particular, its relation to network structure disregarded. In this paper we introduce a model framework to analyze the mediation of network structure by spatial embedding; specifically, we model connectivity as dependent on the distance between network nodes. Our spatially embedded random networks construction is not primarily intended as an accurate model of any specific class of real-world networks, but rather to gain intuition for the effects of spatial embedding on network structure; nevertheless we are able to demonstrate, in a quite general setting, some constraints of spatial embedding on connectivity such as the effects of spatial symmetry, conditions for scale free degree distributions and the existence of small-world spatial networks. We also derive some standard structural statistics for spatially embedded networks and illustrate the application of our model framework with concrete examples. PMID:18233726

  1. Spatially embedded random networks

    NASA Astrophysics Data System (ADS)

    Barnett, L.; di Paolo, E.; Bullock, S.

    2007-11-01

    Many real-world networks analyzed in modern network theory have a natural spatial element; e.g., the Internet, social networks, neural networks, etc. Yet, aside from a comparatively small number of somewhat specialized and domain-specific studies, the spatial element is mostly ignored and, in particular, its relation to network structure disregarded. In this paper we introduce a model framework to analyze the mediation of network structure by spatial embedding; specifically, we model connectivity as dependent on the distance between network nodes. Our spatially embedded random networks construction is not primarily intended as an accurate model of any specific class of real-world networks, but rather to gain intuition for the effects of spatial embedding on network structure; nevertheless we are able to demonstrate, in a quite general setting, some constraints of spatial embedding on connectivity such as the effects of spatial symmetry, conditions for scale free degree distributions and the existence of small-world spatial networks. We also derive some standard structural statistics for spatially embedded networks and illustrate the application of our model framework with concrete examples.

  2. Spatial vegetation patterns and desertification

    NASA Astrophysics Data System (ADS)

    Rietkerk, M.; Kéfi, S.

    2009-04-01

    Arid ecosystems are amongst the most sensitive ecosystems to human pressure and climate change, and are liable to undergo desertification. This is a main concern because this may occur abruptly and irreversibly, with concomitant losses of ecological and economic resources. Such ecosystem shifts have been theoretically attributed to positive feedback and alternative stable ecosystem states. However, verifications and predictive power with respect to such ecosystem dynamics are lacking for spatially extensive ecosystems. Therefore, management and recovery strategies against desertification for arid ecosystems are difficult to achieve. Theoretical models predict that so-called regular vegetation patterns observed in large areas in arid ecosystems world-wide are a result of spatial self-organization, and the shapes of the patterns are associated with approaching desertification thresholds. Also, patch-size distribution of the vegetation in various arid ecosystems follows a power law, and consistent deviations from power laws occur if grazing pressure is high. Model analysis suggests that such deviations from power laws may be a warning signal for the onset of desertification, independent of the vegetation cover. So, spatial patterns of vegetation, not cover, can be used to assess the vulnerability of arid ecosystems to increased human pressure or ongoing climate change. Common ecological mechanisms that account for these patterns are scale-dependent feedback and local facilitation. Our results are relevant to identify areas that are vulnerable to desertification in the face of increased human pressure and ongoing global climate change, as well as for the restoration of areas that are already degraded.

  3. Thick Photoresist Original Master:

    NASA Astrophysics Data System (ADS)

    Mizuno, Hirotaka; Sugihara, Okihiro; Kaino, Toshikuni; Ohe, Yuka; Okamoto, Naomichi; Hoshino, Masahito

    A simple and low-cost fabrication method of polymeric optical waveguides with large core sizes for plastic optical fibers is presented. The waveguides are fabricated by hot embossing with a rectangular ridge ultraviolet (UV)-cured epoxy resin stamper. The stamper is fabricated by replication of a rectangular groove mold that is made from silicone rubber replicated from a rectangular ridge original master made from thick photoresist (SU-8). A rectangular ridge shape of the original photoresist master of 1 mm size was realized by using a flattening process, which involves hot embossing before the exposure process and using a UV-cut filter during the exposure process.

  4. Tektites and their origin

    NASA Technical Reports Server (NTRS)

    Okeefe, J. A.

    1976-01-01

    Questions concerning the tektite distribution are examined, taking into account the Australasian strewn field, the Ivory Coast strewn field, the Moldavite strewn field, the North American strewn field, the Libyan desert glass, the Aouelloul crater glass, and amerikanites. Attention is given to the shapes of tektites, the internal structure of tektites, the physical properties of tektite glass, the chemical composition of tektites, isotopes, fission tracks, cosmic ray tracks, and arguments in favor and against the terrestrial origin of tektites. It is concluded that tektites cannot be terrestrial in origin. They are probably volcanic ejects, of geologically recent epochs, from one or a number of lunar volcanoes.

  5. Leading the Common Core State Standards: From Common Sense to Common Practice

    ERIC Educational Resources Information Center

    Dunkle, Cheryl A.

    2012-01-01

    Many educators agree that we already know how to foster student success, so what is keeping common sense from becoming common practice? The author provides step-by-step guidance for overcoming the barriers to adopting the Common Core State Standards (CCSS) and achieving equity and excellence for all students. As an experienced teacher and…

  6. On the Origin of Heterotrophy.

    PubMed

    Schönheit, Peter; Buckel, Wolfgang; Martin, William F

    2016-01-01

    The theory of autotrophic origins of life posits that the first cells on Earth satisfied their carbon needs from CO2. At hydrothermal vents, spontaneous synthesis of methane via serpentinization links an energy metabolic reaction with a geochemical homologue. If the first cells were autotrophs, how did the first heterotrophs arise, and what was their substrate? We propose that cell mass roughly similar to the composition of Escherichia coli was the substrate for the first chemoorganoheterotrophs. Amino acid fermentations, pathways typical of anaerobic clostridia and common among anaerobic archaea, in addition to clostridial type purine fermentations, might have been the first forms of heterotrophic carbon and energy metabolism. Ribose was probably the first abundant sugar, and the archaeal type III RubisCO pathway of nucleoside monophosphate conversion to 3-phosphoglycerate might be a relic of ancient heterotrophy. Participation of chemiosmotic coupling and flavin-based electron bifurcation--a soluble energy coupling process--in clostridial amino acid and purine fermentations is consistent with an autotrophic origin of both metabolism and heterotrophy, as is the involvement of S(0) as an electron acceptor in the facilitated fermentations of anaerobic heterotrophic archaea. PMID:26578093

  7. Smart POI: Open and linked spatial data

    NASA Astrophysics Data System (ADS)

    Cerba, Otakar; Berzins, Raitis; Charvat, Karel; Mildorf, Tomas

    2016-04-01

    The Smart Point of Interest (SPOI) represents an unique seamless spatial data set based on standards recommended for Linked and open data, which are supported by scientist and researchers as well as by several government authorities and European Union. This data set developed in cooperation of partners of SDI4Apps project contains almost 24 millions points of interest focused mainly on tourism, natural features, transport or citizen services. The SPOI data covers almost all countries and territories over the world. It is created as a harmonized combination of global data resources (selected points from OpenStreetMap, Natural Earth and GeoNames.org) and several local data sets (for example data published by the Citadel on the Move project, data from Posumavi region in the Czech Republic or experimental ontologies developed in the University of West Bohemia including ski regions in Europe or historical sights in Rome). The added value of the SDI4Apps approach in comparison to other similar solutions consists in implementation of linked data approach (several objects are connected to DBpedia or GeoNames.org), using of universal RDF format, using of standardized and respected properties or vocabularies (for example FOAF or GeoSPARQL) and development of the completely harmonized data set with uniform data model and common classification (not only a copy of original resources). The SPOI data is published as SPARQL endpoint as well as in the map client. The SPOI dataset is a specific set of POIs which could be "a data fuel" for applications and services related to tourism, local business, statistics or landscape monitoring. It can be used also as a background data layer for thematic maps.

  8. Architectural Implications for Spatial Object Association Algorithms*

    PubMed Central

    Kumar, Vijay S.; Kurc, Tahsin; Saltz, Joel; Abdulla, Ghaleb; Kohn, Scott R.; Matarazzo, Celeste

    2013-01-01

    Spatial object association, also referred to as crossmatch of spatial datasets, is the problem of identifying and comparing objects in two or more datasets based on their positions in a common spatial coordinate system. In this work, we evaluate two crossmatch algorithms that are used for astronomical sky surveys, on the following database system architecture configurations: (1) Netezza Performance Server®, a parallel database system with active disk style processing capabilities, (2) MySQL Cluster, a high-throughput network database system, and (3) a hybrid configuration consisting of a collection of independent database system instances with data replication support. Our evaluation provides insights about how architectural characteristics of these systems affect the performance of the spatial crossmatch algorithms. We conducted our study using real use-case scenarios borrowed from a large-scale astronomy application known as the Large Synoptic Survey Telescope (LSST). PMID:25692244

  9. Architectural Implications for Spatial Object Association Algorithms

    SciTech Connect

    Kumar, V S; Kurc, T; Saltz, J; Abdulla, G; Kohn, S R; Matarazzo, C

    2009-01-29

    Spatial object association, also referred to as cross-match of spatial datasets, is the problem of identifying and comparing objects in two or more datasets based on their positions in a common spatial coordinate system. In this work, we evaluate two crossmatch algorithms that are used for astronomical sky surveys, on the following database system architecture configurations: (1) Netezza Performance Server R, a parallel database system with active disk style processing capabilities, (2) MySQL Cluster, a high-throughput network database system, and (3) a hybrid configuration consisting of a collection of independent database system instances with data replication support. Our evaluation provides insights about how architectural characteristics of these systems affect the performance of the spatial crossmatch algorithms. We conducted our study using real use-case scenarios borrowed from a large-scale astronomy application known as the Large Synoptic Survey Telescope (LSST).

  10. SPATIAL AND TEMPORAL VARIABILITY AND DRIVERS OF NET ECOSYSTEM METABOLISM IN WESTERN GULF OF MEXICO ESTUARIES

    EPA Science Inventory

    Net ecosystem metabolism (NEM) is becoming a commonly used ecological indicator of estuarine ecosystem metabolic rates. Estuarine ecosystem processes are spatially and temporally variable, but the corresponding variability in NEM has not been properly assessed. Spatial and temp...

  11. Effects of habitat fragmentation on the fitness of two common wetland species, Carex davalliana and Succisa pratensis.

    PubMed

    Hooftman, Danny A P; van Kleunen, Mark; Diemer, Matthias

    2003-02-01

    Small habitat size and spatial isolation may cause plant populations to suffer from genetic drift and inbreeding, leading to a reduced fitness of individual plants. We examined the germination, establishment, growth, and reproductive capacity of two characteristic species of mown fen meadows, Carex davalliana, and Succisa pratensis, common in Switzerland. Plants were grown from seeds, which were collected in 18 habitat islands, differing in size and in degree of isolation. We used both common garden and reciprocal transplant experiments to assess effects of habitat fragmentation. In the common garden, plants of Carex originating from small habitat islands yielded 35% less biomass, 30% fewer tillers, and 45% fewer flowering tillers than plants from larger ones. In contrast, plants of Succisa originating from small habitat islands yielded 19% more biomass, 14% more flower heads and 35% more flowers per flower head than plants from larger ones. Moreover, plants of Succisa from small isolated habitats yielded 32% more rosettes than did plants from small connected islands. Reciprocally transplanted plants of Succisa originating from small habitat islands produced 7% more rosettes than plants from larger ones. There was no effect of small habitat size and isolation on germination and establishment of both species in the field. Our results document genetic differences in performance attributable to habitat fragmentation in both species. We suggest that fitness loss in Carex is caused by inbreeding depression, whereas in Succisa the differences in fitness are more likely caused by genetic differentiation. Our study implies that habitat fragmentation affects common habitat-specific species, such as Carex and Succisa, as well as rare ones.

  12. Placing the pieces: Reconstructing the original property mosaic in a warrant and patent watershed

    USGS Publications Warehouse

    Bain, D.J.; Brush, G.S.

    2005-01-01

    Recent research shows that land use history is an important determinant of current ecosystem function. In the United States, characterization of land use change following European settlement requires reconstruction of the original property mosaic. However, this task is difficult in unsystematically surveyed areas east of the Appalachian Mountains. The Gwynns Falls watershed (Baltimore, MD) was originally surveyed in the 1600-1700s under a system of warrants and patents (commonly known as 'metes and bounds'). A method for the reconstruction and mapping of warrant and patent properties is presented and used to map the original property mosaic in the Gwynns Falls watershed. Using the mapped mosaic, the persistence of properties and property lines in the current Gwynns Falls landscape is considered. The results of this research indicate that as in agricultural areas, the original property lines in the Gwynns Falls watershed are persistent. At the same time, the results suggest that the property mosaic in heavily urbanized/suburbanized areas is generally 'reset.' Further, trends in surveying technique, parcel size, and settlement patterns cause property line density and property shape complexity to increase in the less urbanized upper watershed. The persistence of original patterns may be damping expression of heterogeneity gradients in this urban landscape. This spatial pattern of complexity in the original mosaic is directly opposite of hypothesized patterns of landscape heterogeneity arising from urbanization. The technique reported here and the resulting observations are important for landscape pattern studies in areas settled under unsystematic survey systems, especially the heavily urbanized areas of the eastern United States. ?? 2004 Kluwer Academic Publishers.

  13. Origins of evolution: non-acquired characters dominates over acquired characters in changing environment.

    PubMed

    Gaucherel, Cédric; Jensen, Henrik Jeldtoft

    2012-07-01

    Natural Selection is so ubiquitous that we never wonder how it appeared as the evolution rule driving Life. We usually wonder how Life appeared, and seldom do we make an explicit distinction between Life and natural selection. Here, we apply the evolution concept commonly used for studying Life to evolution itself. More precisely, we developed two models aiming at selecting among different evolution rules competing for their supremacy. We explored competition between acquired (AQ) versus non-acquired (NAQ) character inheritance. The first model is parsimonious and non-spatial, in order to understand relationships between environmental forcings and rule selection. The second model is spatially explicit and studies the adaptation differences between AQ and NAQ populations. We established that NAQ evolution rule is dominating in case of changing environment. Furthermore, we observed that a more adapted population better fits its environmental constraints, but fails in rapidly changing environments. NAQ principle and less adapted populations indeed act as a reservoir of traits that helps populations to survive in rapidly changing environments, such as the ones that probably Life experienced at its origins. Although perfectible, our modeling approaches will certainly help us to improve our understanding of origins of Life and Evolution, on Earth or elsewhere.

  14. Why do spatial abilities predict mathematical performance?

    PubMed

    Tosto, Maria Grazia; Hanscombe, Ken B; Haworth, Claire M A; Davis, Oliver S P; Petrill, Stephen A; Dale, Philip S; Malykh, Sergey; Plomin, Robert; Kovas, Yulia

    2014-05-01

    Spatial ability predicts performance in mathematics and eventual expertise in science, technology and engineering. Spatial skills have also been shown to rely on neuronal networks partially shared with mathematics. Understanding the nature of this association can inform educational practices and intervention for mathematical underperformance. Using data on two aspects of spatial ability and three domains of mathematical ability from 4174 pairs of 12-year-old twins, we examined the relative genetic and environmental contributions to variation in spatial ability and to its relationship with different aspects of mathematics. Environmental effects explained most of the variation in spatial ability (~70%) and in mathematical ability (~60%) at this age, and the effects were the same for boys and girls. Genetic factors explained about 60% of the observed relationship between spatial ability and mathematics, with a substantial portion of the relationship explained by common environmental influences (26% and 14% by shared and non-shared environments respectively). These findings call for further research aimed at identifying specific environmental mediators of the spatial-mathematics relationship. PMID:24410830

  15. Rasdaman for Big Spatial Raster Data

    NASA Astrophysics Data System (ADS)

    Hu, F.; Huang, Q.; Scheele, C. J.; Yang, C. P.; Yu, M.; Liu, K.

    2015-12-01

    Spatial raster data have grown exponentially over the past decade. Recent advancements on data acquisition technology, such as remote sensing, have allowed us to collect massive observation data of various spatial resolution and domain coverage. The volume, velocity, and variety of such spatial data, along with the computational intensive nature of spatial queries, pose grand challenge to the storage technologies for effective big data management. While high performance computing platforms (e.g., cloud computing) can be used to solve the computing-intensive issues in big data analysis, data has to be managed in a way that is suitable for distributed parallel processing. Recently, rasdaman (raster data manager) has emerged as a scalable and cost-effective database solution to store and retrieve massive multi-dimensional arrays, such as sensor, image, and statistics data. Within this paper, the pros and cons of using rasdaman to manage and query spatial raster data will be examined and compared with other common approaches, including file-based systems, relational databases (e.g., PostgreSQL/PostGIS), and NoSQL databases (e.g., MongoDB and Hive). Earth Observing System (EOS) data collected from NASA's Atmospheric Scientific Data Center (ASDC) will be used and stored in these selected database systems, and a set of spatial and non-spatial queries will be designed to benchmark their performance on retrieving large-scale, multi-dimensional arrays of EOS data. Lessons learnt from using rasdaman will be discussed as well.

  16. The Origin of Life

    ERIC Educational Resources Information Center

    Hodson, D.

    1975-01-01

    Presents an outline of lectures given on this topic to British secondary students. Man's various ideas about the origin of life are included in three categories: those that consider life to have been created by a Divine Being; those that consider life to have developed from non-living matter; and those that consider life to be eternal. (MLH)

  17. The Origins of Mass

    ScienceCinema

    Lincoln, Don

    2016-07-12

    The Higgs boson was discovered in July of 2012 and is generally understood to be the origin of mass. While those statements are true, they are incomplete. It turns out that the Higgs boson is responsible for only about 2% of the mass of ordinary matter. In this dramatic new video, Dr. Don Lincoln of Fermilab tells us the rest of the story.

  18. Conscientiousness: Origins in Childhood?

    ERIC Educational Resources Information Center

    Eisenberg, Nancy; Duckworth, Angela L.; Spinrad, Tracy L.; Valiente, Carlos

    2014-01-01

    In this review, we evaluate developmental and personality research with the aim of determining whether the personality trait of conscientiousness can be identified in children and adolescents. After concluding that conscientiousness does emerge in childhood, we discuss the developmental origins of conscientiousness with a specific focus on…

  19. Originality and Creativity.

    ERIC Educational Resources Information Center

    Tan, Shaun

    This paper discusses the creative process of one author, a professional author/illustrator of picture books. The paper muses about the meaning of creativity and originality and states inspiration has to do with careful research and looking for a challenge. Creativity is about testing one proposition against another and seeing how things combine…

  20. The Origins of Mass

    SciTech Connect

    Lincoln, Don

    2014-07-30

    The Higgs boson was discovered in July of 2012 and is generally understood to be the origin of mass. While those statements are true, they are incomplete. It turns out that the Higgs boson is responsible for only about 2% of the mass of ordinary matter. In this dramatic new video, Dr. Don Lincoln of Fermilab tells us the rest of the story.

  1. Origins of Coordinate Searching.

    ERIC Educational Resources Information Center

    Kilgour, Frederick G.

    1997-01-01

    Reviews the origins of post-coordinate searching and emphasizes that the focal point should be on the searcher, not on the item being indexed. Highlights include the history of the term information retrieval; edge notched punch cards; the "peek-a-boo" system; the Uniterm system; and using computers to search for information. (LRW)

  2. The Origin of Gravitation

    NASA Astrophysics Data System (ADS)

    Zheng, Sheng Ming

    2012-10-01

    In the natural world, people have discovered four kinds of forces: electromagnetic force, gravitation, weak force, and strong force. Although the gravitation has been discovered more than three hundred years, its mechanism of origin is unclear until today. While investigating the origin of gravitation, I do some experiments discover the moving photons produce gravitation. This discovery shows the origin of gravitation. Meanwhile I do some experiments discover the light interference fringes are produced by the gravitation: my discovery demonstrate light is a particle, but is not a wave-particle duality. Furthermore, applications of this discovery to other moving particles show a similar effect. In a word: the micro particle moving produce gravitation and electromagnetic force. Then I do quantity experiment get a general formula: Reveal the essence of gravitational mass and the essence of electric charge; reveal the origin of gravitation and the essence of matter wave. Along this way, I unify the gravitation and electromagnetic force. Namely I find a natural law that from atomic world to star world play in moving track. See website: https://www.lap-publishing.com/catalog/details/store/gb/book/978-3-8473-2658-8/mechanism-of-interaction-in-moving-matter

  3. Development of spatial cognition.

    PubMed

    Vasilyeva, Marina; Lourenco, Stella F

    2012-05-01

    Spatial cognition plays an essential role in everyday functioning and provides a foundation for successful performance in scientific and technological fields. Reasoning about space involves processing information about distance, angles, and direction. Starting from infancy, children display sensitivity to these spatial properties, although their initial skills are quite limited. Subsequent development during early childhood and through the elementary school years involves gradual improvement in the use of individual frames of reference (i.e., egocentric and allocentric), as well as in the ability to flexibly combine different types of spatial information. Similarly, there is a relatively long progression from the starting points, when infants and young children display sensitivity to distance and form simple spatial categories, to more mature spatial competence when older children and adults integrate distance and categorical information hierarchically. Such developments are associated with both the maturation of specific brain regions and accumulating experience, including interactions with the physical world and the acquisition of cultural tools. In particular, the mastery of symbolic spatial representations, such as maps and models, significantly augments basic spatial capabilities. While growing evidence implicates both biological and experiential factors in the development of spatial cognition, a deeper understanding of the mechanisms that underlie the developmental process requires further investigation of how such factors interact to produce organisms that function competently in their environments. WIREs Cogn Sci 2012, 3:349-362. doi: 10.1002/wcs.1171 For further resources related to this article, please visit the WIREs website.

  4. Room 103, transom woodwork and original clock. All clocks are ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Room 103, transom woodwork and original clock. All clocks are driven by a common signal. - San Bernardino Valley College, Life Science Building, 701 South Mount Vernon Avenue, San Bernardino, San Bernardino County, CA

  5. Individual Differences in Spatial Text Processing: High Spatial Ability Can Compensate for Spatial Working Memory Interference

    ERIC Educational Resources Information Center

    Meneghetti, Chiara; Gyselinck, Valerie; Pazzaglia, Francesca; De Beni, Rossana

    2009-01-01

    The present study investigates the relation between spatial ability and visuo-spatial and verbal working memory in spatial text processing. In two experiments, participants listened to a spatial text (Experiments 1 and 2) and a non-spatial text (Experiment 1), at the same time performing a spatial or a verbal concurrent task, or no secondary task.…

  6. Constructing the Commons: Practical Projects To Build the Information Commons.

    ERIC Educational Resources Information Center

    Lee, Daniel R.

    2003-01-01

    Describes several projects aimed at building the Information Commons, including: Knowledge Conservancy plans to create a database of all freely available digitized content; the Universal Library, a project with the long-term goal of providing free, online access to all books; and several projects of the Creative Commons intended to build a robust…

  7. Secure ultrafast communication with spatial-temporal converters.

    PubMed

    Matoba, O; Javidi, B

    2000-06-10

    An encrypted database interfaced with an ultrafast secure data communication system using spatial-temporal converters is proposed. The original spatial signal is optically encrypted, and the encrypted signal is holographically stored in a storage medium such as photorefractive materials. The spatially encrypted signal is sampled to avoid the overlap of each datum at the receiver. The sampled data are converted into a temporal signal to transmit the information through an optical fiber. At the receiver the temporal signal is converted back into the spatially encrypted signal. Retrieval of the original data can be achieved when the correct phase key is used in the decryption system. We developed an expression for encrypted output and decrypted data. We numerically evaluate the effect of sampling the spatially encrypted signal on the quality of the decrypted data.

  8. Recording multiple spatially-heterodyned direct to digital holograms in one digital image

    DOEpatents

    Hanson, Gregory R.; Bingham, Philip R.

    2008-03-25

    Systems and methods are described for recording multiple spatially-heterodyned direct to digital holograms in one digital image. A method includes digitally recording, at a first reference beam-object beam angle, a first spatially-heterodyned hologram including spatial heterodyne fringes for Fourier analysis; Fourier analyzing the recorded first spatially-heterodyned hologram by shifting a first original origin of the recorded first spatially-heterodyned hologram to sit on top of a first spatial-heterodyne carrier frequency defined by the first reference beam-object beam angle; digitally recording, at a second reference beam-object beam angle, a second spatially-heterodyned hologram including spatial heterodyne fringes for Fourier analysis; Fourier analyzing the recorded second spatially-heterodyned hologram by shifting a second original origin of the recorded second spatially-heterodyned hologram to sit on top of a second spatial-heterodyne carrier frequency defined by the second reference beam-object beam angle; applying a first digital filter to cut off signals around the first original origin and define a first result; performing a first inverse Fourier transform on the first result; applying a second digital filter to cut off signals around the second original origin and define a second result; and performing a second inverse Fourier transform on the second result, wherein the first reference beam-object beam angle is not equal to the second reference beam-object beam angle and a single digital image includes both the first spatially-heterodyned hologram and the second spatially-heterodyned hologram.

  9. Spatial Variability of Streambed Hydraulic Conductivity of a Lowland River

    NASA Astrophysics Data System (ADS)

    Schneidewind, Uwe; Thornton, Steven; Van De Vijver, Ellen; Joris, Ingeborg; Seuntjens, Piet

    2015-04-01

    Streambed hydraulic conductivity K is a key physical parameter, which describes flow processes in the hyporheic zone (HZ), i.e. the dynamic interface between aquifers and streams or rivers. Knowledge of the spatial variability of K is also important for the interpretation of contaminant transport processes in the HZ. Streambed K can vary over several magnitudes at small spatial scales. It depends mostly on streambed sediment characteristics (e.g. effective porosity, grain size, packing), streambed processes (e.g. sedimentation, colmation and erosion) and the development of stream channel geometry and streambed morphology (e.g. dunes, anti-dunes, pool-riffle sequences, etc.). Although heterogeneous in natural streambeds, streambed K is often considered to be a constant parameter due to a lack of information on its spatial distribution. Here we show the spatial variability of streambed K for a small section of the River Tern, a lowland river in the UK. Streambed K was determined for more than 120 vertically and horizontally distributed locations from grain size analyses using four empirical approaches (Hazen, Beyer, Kozeny and the USBR model). Additionally, streambed K was estimated from falling head tests in 36 piezometers installed into the streambed on a 4 m by 16 m grid, by applying the Springer-Gelhar Model. For both methods streambed K followed a log-normal distribution. Variogram analysis was used to deduce the spatial variability of the streambed K values within several streambed profiles parallel and perpendicular to the main flow direction in the stream. Hydraulic conductivity Kg estimated from grain size analyses varied between 1 m/d and 155 m/d with standard deviations of 79% to 99% depending on the empirical approach used. Kh estimated from falling head tests varied between 1 m/d and 22 m/d with a standard deviation of about 50%, depending on the degree of anisotropy assumed. After rescaling the data to obtain a common sample support, Pearson correlation

  10. Reasoning with inaccurate spatial knowledge. [for Planetary Rover

    NASA Technical Reports Server (NTRS)

    Doshi, Rajkumar S.; White, James E.; Lam, Raymond; Atkinson, David J.

    1988-01-01

    This paper describes work in progress on spatial planning for a semiautonomous mobile robot vehicle. The overall objective is to design a semiautonomous rover to plan routes in unknown, natural terrains. The approach to spatial planning involves deduction of common-sense spatial knowledge using geographical information, natural terrain representations, and assimilation of new and possibly conflicting terrain information. This report describes the ongoing research and implementation.

  11. How Common is Common Use Facilities at Airports

    NASA Astrophysics Data System (ADS)

    Barbeau, Addison D.

    This study looked at common use airports across the country and at the implementation of common use facailities at airports. Common use consists of several elements that maybe installed at an airport. One of the elements is the self-service kiosks that allow passengers to have a faster check-in process, therefore moving them more quickly within the airport. Another element is signage and the incorporation of each airline's logo. Another aspect of common useis an airport regaining control of terminal gates by reducing the number of gates that are exclusively leased to a specific air carrier. This research focused on the current state of the common use facilities across the United States and examines the advantages and disadvantages of this approach. The research entailed interviews with personnel at a wide range of airports and found that each airport is in a different stage of implementation; some have fully implemented the common use concept while others are in the beginning stages of implementation. The questions were tailored to determine what the advantages and disadvantages are of a common use facility. The most common advantages reported included flexibility and cost. In the commom use system the airport reserves the right to move any airline to a different gate at any time for any reason. In turn, this helps reduce gates delays at that facility. For the airports that were interviewed no major disadvantages were reported. One down side of common use facilities for the airport involved is the major capital cost that is required to move to a common use system.

  12. Spatial-Operator Algebra For Flexible-Link Manipulators

    NASA Technical Reports Server (NTRS)

    Jain, Abhinandan; Rodriguez, Guillermo

    1994-01-01

    Method of computing dynamics of multiple-flexible-link robotic manipulators based on spatial-operator algebra, which originally applied to rigid-link manipulators. Aspects of spatial-operator-algebra approach described in several previous articles in NASA Tech Briefs-most recently "Robot Control Based on Spatial-Operator Algebra" (NPO-17918). In extension of spatial-operator algebra to manipulators with flexible links, each link represented by finite-element model: mass of flexible link apportioned among smaller, lumped-mass rigid bodies, coupling of motions expressed in terms of vibrational modes. This leads to operator expression for modal-mass matrix of link.

  13. The origins of cellular life.

    PubMed

    Schrum, Jason P; Zhu, Ting F; Szostak, Jack W

    2010-09-01

    Understanding the origin of cellular life on Earth requires the discovery of plausible pathways for the transition from complex prebiotic chemistry to simple biology, defined as the emergence of chemical assemblies capable of Darwinian evolution. We have proposed that a simple primitive cell, or protocell, would consist of two key components: a protocell membrane that defines a spatially localized compartment, and an informational polymer that allows for the replication and inheritance of functional information. Recent studies of vesicles composed of fatty-acid membranes have shed considerable light on pathways for protocell growth and division, as well as means by which protocells could take up nutrients from their environment. Additional work with genetic polymers has provided insight into the potential for chemical genome replication and compatibility with membrane encapsulation. The integration of a dynamic fatty-acid compartment with robust, generalized genetic polymer replication would yield a laboratory model of a protocell with the potential for classical Darwinian biological evolution, and may help to evaluate potential pathways for the emergence of life on the early Earth. Here we discuss efforts to devise such an integrated protocell model.

  14. Identifying the origin of waterbird carcasses in Lake Michigan using a neural network source tracking model

    USGS Publications Warehouse

    Kenow, Kevin P.; Ge, Zhongfu; Fara, Luke J.; Houdek, Steven C.; Lubinski, B.

    2016-01-01

    Avian botulism type E is responsible for extensive waterbird mortality on the Great Lakes, yet the actual site of toxin exposure remains unclear. Beached carcasses are often used to describe the spatial aspects of botulism mortality outbreaks, but lack specificity of offshore toxin source locations. We detail methodology for developing a neural network model used for predicting waterbird carcass motions in response to wind, wave, and current forcing, in lieu of a complex analytical relationship. This empirically trained model uses current velocity, wind velocity, significant wave height, and wave peak period in Lake Michigan simulated by the Great Lakes Coastal Forecasting System. A detailed procedure is further developed to use the model for back-tracing waterbird carcasses found on beaches in various parts of Lake Michigan, which was validated using drift data for radiomarked common loon (Gavia immer) carcasses deployed at a variety of locations in northern Lake Michigan during September and October of 2013. The back-tracing model was further used on 22 non-radiomarked common loon carcasses found along the shoreline of northern Lake Michigan in October and November of 2012. The model-estimated origins of those cases pointed to some common source locations offshore that coincide with concentrations of common loons observed during aerial surveys. The neural network source tracking model provides a promising approach for identifying locations of botulinum neurotoxin type E intoxication and, in turn, contributes to developing an understanding of the dynamics of toxin production and possible trophic transfer pathways.

  15. Spatial patterns in ant colonies.

    PubMed

    Theraulaz, Guy; Bonabeau, Eric; Nicolis, Stamatios C; Solé, Ricard V; Fourcassié, Vincent; Blanco, Stéphane; Fournier, Richard; Joly, Jean-Louis; Fernández, Pau; Grimal, Anne; Dalle, Patrice; Deneubourg, Jean-Louis

    2002-07-23

    The origins of large-scale spatial patterns in biology have been an important source of theoretical speculation since the pioneering work by Turing (1952) on the chemical basis of morphogenesis. Knowing how these patterns emerge and their functional role is important to our understanding of the evolution of biocomplexity and the role played by self organization. However, so far, conclusive evidence for local activation-long-range inhibition mechanisms in real biological systems has been elusive. Here a well-defined experimental and theoretical analysis of the pattern formation dynamics exhibited by clustering behavior in ant colonies is presented. These experiments and a simple mathematical model show that these colonies do indeed use this type of mechanism. All microscopic variables have been measured and provide the first evidence, to our knowledge, for this type of self-organized behavior in complex biological systems, supporting early conjectures about its role in the organization of insect societies. PMID:12114538

  16. 52. Photocopy of copy of original Officers' Duplex Quarters drawing ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    52. Photocopy of copy of original Officers' Duplex Quarters drawing by Copeland, 7 April 1932 (Original in possession of Veterans Administration, Wichita, Kansas, copy at Ablah Library, Wichita State University). Heating - Veterans Administration Center, Officers Duplex Quarters, 5302 East Kellogg (Legal Address); 5500 East Kellogg (Common Address), Wichita, Sedgwick County, KS

  17. 51. Photocopy of copy of original Officers' Duplex Quarters drawing ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    51. Photocopy of copy of original Officers' Duplex Quarters drawing by B.S. Elliott, 7 April 1932 (original in possession of Veterans Administration, Wichita, Kansas, copy at Ablah Library, Wichita State University). Plumbing - Veterans Administration Center, Officers Duplex Quarters, 5302 East Kellogg (Legal Address); 5500 East Kellogg (Common Address), Wichita, Sedgwick County, KS

  18. 48. Photocopy of copy of original Officers' Duplex Quarters drawing ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    48. Photocopy of copy of original Officers' Duplex Quarters drawing by Turner, 7 April 1932 (original in possession of Veterans Administration, Wichita, Kansas, copy at Ablah Library, Wichita State University). Attic and roof, basement, first floor, and second floor plans - Veterans Administration Center, Officers Duplex Quarters, 5302 East Kellogg (Legal Address); 5500 East Kellogg (Common Address), Wichita, Sedgwick County, KS

  19. 50. Photocopy of copy of original Officers' Duplex Quarters drawing ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    50. Photocopy of copy of original Officers' Duplex Quarters drawing by Turner, 7 April 1932 (original in possession of Veterans Administration, Wichita, Kansas, copy at Ablah Library, Wichita State University. Detail of front entrance and of gable dormer - Veterans Administration Center, Officers Duplex Quarters, 5302 East Kellogg (Legal Address); 5500 East Kellogg (Common Address), Wichita, Sedgwick County, KS

  20. 49. Photocopy of copy of original Officers' Duplex Quarters drawing ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    49. Photocopy of copy of original Officers' Duplex Quarters drawing by Turner, 7 April 1932 (original in possession of Veterans Administration, Wichita, Kansas, copy at Ablah Library, Wichita State University). Front, rear, and side elevations, and cross-section - Veterans Administration Center, Officers Duplex Quarters, 5302 East Kellogg (Legal Address); 5500 East Kellogg (Common Address), Wichita, Sedgwick County, KS

  1. 47 CFR 32.6310 - Information origination/termination expenses.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 47 Telecommunication 2 2011-10-01 2011-10-01 false Information origination/termination expenses. 32.6310 Section 32.6310 Telecommunication FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) COMMON... Accounts § 32.6310 Information origination/termination expenses. Class B telephone companies shall use...

  2. Children's Spatial Thinking: Does Talk about the Spatial World Matter?

    ERIC Educational Resources Information Center

    Pruden, Shannon M.; Levine, Susan C.; Huttenlocher, Janellen

    2011-01-01

    In this paper we examine the relations between parent spatial language input, children's own production of spatial language, and children's later spatial abilities. Using a longitudinal study design, we coded the use of spatial language (i.e. words describing the spatial features and properties of objects; e.g. big, tall, circle, curvy, edge) from…

  3. Robustness of spatial micronetworks

    NASA Astrophysics Data System (ADS)

    McAndrew, Thomas C.; Danforth, Christopher M.; Bagrow, James P.

    2015-04-01

    Power lines, roadways, pipelines, and other physical infrastructure are critical to modern society. These structures may be viewed as spatial networks where geographic distances play a role in the functionality and construction cost of links. Traditionally, studies of network robustness have primarily considered the connectedness of large, random networks. Yet for spatial infrastructure, physical distances must also play a role in network robustness. Understanding the robustness of small spatial networks is particularly important with the increasing interest in microgrids, i.e., small-area distributed power grids that are well suited to using renewable energy resources. We study the random failures of links in small networks where functionality depends on both spatial distance and topological connectedness. By introducing a percolation model where the failure of each link is proportional to its spatial length, we find that when failures depend on spatial distances, networks are more fragile than expected. Accounting for spatial effects in both construction and robustness is important for designing efficient microgrids and other network infrastructure.

  4. The spatial rotator.

    PubMed

    Rasmusson, A; Hahn, U; Larsen, J O; Gundersen, H J G; Jensen, E B Vedel; Nyengaard, J R

    2013-05-01

    This paper presents a new local volume estimator, the spatial rotator, which is based on measurements on a virtual 3D probe, using computer assisted microscopy. The basic design of the probe builds upon the rotator principle which requires only a few manual intersection markings, thus making the spatial rotator fast to use. Since a 3D probe is involved, it is expected that the spatial rotator will be more efficient than the the nucleator and the planar rotator, which are based on measurements in a single plane. An extensive simulation study shows that the spatial rotator may be more efficient than the traditional local volume estimators. Furthermore, the spatial rotator can be seen as a further development of the Cavalieri estimator, which does not require randomization of sectioning or viewing direction. The tissue may thus be sectioned in any arbitrary direction, making it easy to identify the specific tissue region under study. In order to use the spatial rotator in practice, however, it is necessary to be able to identify intersection points between cell boundaries and test rays in a series of parallel focal planes, also at the peripheral parts of the cell boundaries. In cases where over- and underprojection phenomena are not negligible, they should therefore be corrected for if the spatial rotator is to be applied. If such a correction is not possible, it is needed to avoid these phenomena by using microscopy with increased resolution in the focal plane. PMID:23488880

  5. Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower.

    PubMed

    Chanderbali, André S; Yoo, Mi-Jeong; Zahn, Laura M; Brockington, Samuel F; Wall, P Kerr; Gitzendanner, Matthew A; Albert, Victor A; Leebens-Mack, James; Altman, Naomi S; Ma, Hong; dePamphilis, Claude W; Soltis, Douglas E; Soltis, Pamela S

    2010-12-28

    The origin and rapid diversification of the angiosperms (Darwin's "Abominable Mystery") has engaged generations of researchers. Here, we examine the floral genetic programs of phylogenetically pivotal angiosperms (water lily, avocado, California poppy, and Arabidopsis) and a nonflowering seed plant (a cycad) to obtain insight into the origin and subsequent evolution of the flower. Transcriptional cascades with broadly overlapping spatial domains, resembling the hypothesized ancestral gymnosperm program, are deployed across morphologically intergrading organs in water lily and avocado flowers. In contrast, spatially discrete transcriptional programs in distinct floral organs characterize the more recently derived angiosperm lineages represented by California poppy and Arabidopsis. Deep evolutionary conservation in the genetic programs of putatively homologous floral organs traces to those operating in gymnosperm reproductive cones. Female gymnosperm cones and angiosperm carpels share conserved genetic features, which may be associated with the ovule developmental program common to both organs. However, male gymnosperm cones share genetic features with both perianth (sterile attractive and protective) organs and stamens, supporting the evolutionary origin of the floral perianth from the male genetic program of seed plants. PMID:21149731

  6. Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower.

    PubMed

    Chanderbali, André S; Yoo, Mi-Jeong; Zahn, Laura M; Brockington, Samuel F; Wall, P Kerr; Gitzendanner, Matthew A; Albert, Victor A; Leebens-Mack, James; Altman, Naomi S; Ma, Hong; dePamphilis, Claude W; Soltis, Douglas E; Soltis, Pamela S

    2010-12-28

    The origin and rapid diversification of the angiosperms (Darwin's "Abominable Mystery") has engaged generations of researchers. Here, we examine the floral genetic programs of phylogenetically pivotal angiosperms (water lily, avocado, California poppy, and Arabidopsis) and a nonflowering seed plant (a cycad) to obtain insight into the origin and subsequent evolution of the flower. Transcriptional cascades with broadly overlapping spatial domains, resembling the hypothesized ancestral gymnosperm program, are deployed across morphologically intergrading organs in water lily and avocado flowers. In contrast, spatially discrete transcriptional programs in distinct floral organs characterize the more recently derived angiosperm lineages represented by California poppy and Arabidopsis. Deep evolutionary conservation in the genetic programs of putatively homologous floral organs traces to those operating in gymnosperm reproductive cones. Female gymnosperm cones and angiosperm carpels share conserved genetic features, which may be associated with the ovule developmental program common to both organs. However, male gymnosperm cones share genetic features with both perianth (sterile attractive and protective) organs and stamens, supporting the evolutionary origin of the floral perianth from the male genetic program of seed plants.

  7. Uncovering common bacterial skin infections.

    PubMed

    Napierkowski, Daria

    2013-03-10

    The four most common bacterial skin infections are impetigo, erysipelas, cellulitis, and folliculitis. This article summarizes current information about the etiology, clinical presentation, diagnosis, prevention, treatment, and implications for primary care practice needed to effectively diagnose and treat common bacterial skin infections. PMID:23361375

  8. Common Pyraloidea species of Dominica

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Forty-six adult crambid moths of the superfamily Pyraloidea from Dominica are illustrated and identified. These images are a tool for the identification of large, common species in the Caribbean. The Caribbean is a common entry and pathway of invasive species to southeastern United States....

  9. Building on the Common Core

    ERIC Educational Resources Information Center

    Conley, David T.

    2011-01-01

    The Common Core State Standards, released in June 2010, offer an opportunity to shift education away from shallow, test-prep instruction and toward a focus on key cognitive skills, writes Conley. Two consortia of states are now developing common assessments to measure these standards--assessments that will be designed to capture deeper, more…

  10. The Tragedy of the Commons

    ERIC Educational Resources Information Center

    Short, Daniel

    2016-01-01

    The tragedy of the commons is one of the principal tenets of ecology. Recent developments in experiential computer-based simulation of the tragedy of the commons are described. A virtual learning environment is developed using the popular video game "Minecraft". The virtual learning environment is used to experience first-hand depletion…

  11. The Common Core Takes Hold

    ERIC Educational Resources Information Center

    Rothman, Robert

    2014-01-01

    A survey administered in the spring of 2013 by the Center on Education Policy (CEP) inquired into the implementation of Common Core State Standards at that time. Based on self-reports by state officials, the survey found that curricula aligned to the common core were already being taught in at least some districts or grade levels. All states…

  12. Understanding Common Core State Standards

    ERIC Educational Resources Information Center

    Kendall, John S.

    2011-01-01

    Now that the Common Core standards are coming to just about every school, what every school leader needs is a straightforward explanation that lays out the benefits of the Common Core in plain English, provides a succinct overview, and gets everyone thinking about how to transition to this promising new paradigm. This handy, inexpensive booklet…

  13. Remedies for Common Cold Symptoms

    PubMed Central

    Miller, Penny F.

    1991-01-01

    Individuals suffering from intolerable symptoms of the common cold can now be advised of safe and effective products for symptomatic relief. This article describes and discusses four categories of drugs used to treat the common cold. To simplify the product selection process for family physicians, suggestions are included for possible ingredients for treatments of specific cold symptoms. PMID:21234087

  14. OSTA commonality analysis, volume 2

    NASA Technical Reports Server (NTRS)

    Stolarik, E. G.

    1981-01-01

    The 13 OSTA disciplines are examined and the applications being performed under each discipline and the parameter requirements associated with the various applications are identified. It contains a variety of printouts from the commonality database built using DRS on the Vax. It also shows commonality of parameter requirements by discipline and by application.

  15. Spatial Relation Predicates in Topographic Feature Semantics

    USGS Publications Warehouse

    Varanka, Dalia E.; Caro, Holly K.

    2013-01-01

    Topographic data are designed and widely used for base maps of diverse applications, yet the power of these information sources largely relies on the interpretive skills of map readers and relational database expert users once the data are in map or geographic information system (GIS) form. Advances in geospatial semantic technology offer data model alternatives for explicating concepts and articulating complex data queries and statements. To understand and enrich the vocabulary of topographic feature properties for semantic technology, English language spatial relation predicates were analyzed in three standard topographic feature glossaries. The analytical approach drew from disciplinary concepts in geography, linguistics, and information science. Five major classes of spatial relation predicates were identified from the analysis; representations for most of these are not widely available. The classes are: part-whole (which are commonly modeled throughout semantic and linked-data networks), geometric, processes, human intention, and spatial prepositions. These are commonly found in the ‘real world’ and support the environmental science basis for digital topographical mapping. The spatial relation concepts are based on sets of relation terms presented in this chapter, though these lists are not prescriptive or exhaustive. The results of this study make explicit the concepts forming a broad set of spatial relation expressions, which in turn form the basis for expanding the range of possible queries for topographical data analysis and mapping.

  16. Bioenergetics and Life's Origins

    PubMed Central

    Deamer, David; Weber, Arthur L.

    2010-01-01

    Bioenergetics is central to our understanding of living systems, yet has attracted relatively little attention in origins of life research. This article focuses on energy resources available to drive primitive metabolism and the synthesis of polymers that could be incorporated into molecular systems having properties associated with the living state. The compartmented systems are referred to as protocells, each different from all the rest and representing a kind of natural experiment. The origin of life was marked when a rare few protocells happened to have the ability to capture energy from the environment to initiate catalyzed heterotrophic growth directed by heritable genetic information in the polymers. This article examines potential sources of energy available to protocells, and mechanisms by which the energy could be used to drive polymer synthesis. PMID:20182625

  17. Origin of Life

    NASA Astrophysics Data System (ADS)

    Lal, Ashwini Kumar

    2008-10-01

    The evolution of life has been a big enigma despite rapid advancements in the field of astrobiology, microbiology and genetics in recent years. The answer to this puzzle is as mindboggling as the riddle relating to evolution of the universe itself. Despite the fact that panspermia has gained considerable support as a viable explanation for origin of life on the earth and elsewhere in the universe, the issue, however, remains far from a tangible solution. This paper examines the various prevailing hypotheses regarding origin of life-like abiogenesis, RNA world, iron-sulphur world and panspermia, and concludes that delivery of life-bearing organic molecules by the comets in the early epoch of the earth alone possibly was not responsible for kick-starting the process of evolution of life on our planet.

  18. Endosymbionts and mitochondrial origins

    NASA Technical Reports Server (NTRS)

    Woese, C. R.

    1977-01-01

    The possibility is put forth that the mitochondrion did not originate from an endosymbiosis 1-2 billion years ago involving an aerobic bacterium. Rather, it arose by endosymbiosis in a much earlier anaerobic period and was initially a photosynthetic organelle analogous to the modern chloroplast. This suggestion arises from a reconsideration of the nature of endosymbiosis. It explains the remarkable diversity in mitochondrial information storage and processing systems.

  19. The tragedy of the commons: twenty-two years later.

    PubMed

    Feeny, D; Berkes, F; Mccay, B J; Acheson, J M

    1990-03-01

    The authors take up the hypothesis originally proposed by Garrett Hardin that resources held in common, such as oceans, rivers, air, and parklands, are bound to be subject to massive degradation. Specifically, they "examine the accumulated evidence pertaining to common-property resource management and provide a critique of the conventional theory expounded by Hardin." They conclude that recent evidence suggests that users of such resources are able to restrict access to them and establish rules among themselves for their sustainable use.

  20. Spatial Light Amplifier Modulators

    NASA Technical Reports Server (NTRS)

    Eng, Sverre T.; Olsson, N. Anders

    1992-01-01

    Spatial light amplifier modulators (SLAM's) are conceptual devices that effect two-dimensional spatial modulation in optical computing and communication systems. Unlike current spatial light modulators, these provide gain. Optical processors incorporating SLAM's designed to operate in reflection or transmission mode. Each element of planar SLAM array is optical amplifier - surface-emitting diode laser. Array addressed electrically with ac modulating signals superimposed on dc bias currents supplied to lasers. SLAM device provides both desired modulation and enough optical gain to enable splitting of output signal into many optical fibers without excessive loss of power.

  1. Origins of magnetospheric plasma

    SciTech Connect

    Moore, T.E. )

    1991-01-01

    A review is given of recent (1987-1990) progress in understanding of the origins of plasmas in the earth's magnetosphere. In counterpoint to the early supposition that geomagnetic phenomena are produced by energetic plasmas of solar origin, 1987 saw the publication of a provocative argument that accelerated ionospheric plasma could supply all magnetospheric auroral and ring current particles. Significant new developments of existing data sets, as well as the establishment of entirely new data sets, have improved the ability to identify plasma source regions and to track plasma through the magnetospheric system of boundary layers and reservoirs. These developments suggest that the boundary between ionospheric and solar plasmas, once taken to lie at the plasmapause, actually lies much nearer to the magnetopause. Defining this boundary as the surface where solar wind and ionosphere contribute equally to the plasma, it is referred to herein as the 'geopause'. It is now well established that the infusion of ionospheric O(+) plays a major role in the storm-time distention of the magnetotail and inflation of the inner magnetosphere. After more than two decades of observation and debate, the question remains whether magnetosheric are protons of solar or terrestrial origin. 161 refs.

  2. Origin of tektites

    NASA Technical Reports Server (NTRS)

    O'Keefe, John A.

    1994-01-01

    The origin of tektites has been obscure because of the following dilemma. The application of physical principles to the data available on tektites points strongly to origin from one or more lunar volcanoes; but few glasses of tektite composition have hitherto been reported from the lunar samples. Instead, the lunar silicic glasses consist chiefly of a material very rich in K2O and poor in MgO. The ratio of K2O/MgO is higher in these glasses than in any tektites reported. The solution of the dilemma seems to come from the study of some recently discovered terrestrial deposits of tektite glass with high values of K2O/MgO at the Cretaceous Tertiary boundary. These glasses are found to be very vulnerable to crystallization into sandine or to alteration to smectite. These end products are known and are more abundant than any terrestrial deposits of tektite glass. It seems possible that, in fact, the moon produces tektite glass, mostly of the high K2O-low MgO type; but on Earth these deposits are destroyed. The much less abundant deposits with lower K and higher Mg are observed because they survive. Other objections to the lunar origin hypothesis appear to be answerable.

  3. Random lasing with spatially nonuniform gain

    NASA Astrophysics Data System (ADS)

    Fan, Ting; Lü, Jiantao

    2016-07-01

    Spatial and spectral properties of random lasing with spatially nonuniform gain were investigated in two-dimensional (2D) disordered medium. The pumping light was described by an individual electric field and coupled into the rate equations by using the polarization equation. The spatially nonuniform gain comes from the multiple scattering of this pumping light. Numerical simulation of the random system with uniform and nonuniform gain were performed both in weak and strong scattering regime. In weak scattering sample, all the lasing modes correspond to those of the passive system whether the nonuniform gain is considered. However, in strong scattering regime, new lasing modes appear with nonuniform gain as the localization area changes. Our results show that it is more accurate to describe the random lasing behavior with introducing the nonuniform gain origins from the multiple light scattering.

  4. Origin of Spliceosomal Introns and Alternative Splicing

    PubMed Central

    Irimia, Manuel; Roy, Scott William

    2014-01-01

    In this work we review the current knowledge on the prehistory, origins, and evolution of spliceosomal introns. First, we briefly outline the major features of the different types of introns, with particular emphasis on the nonspliceosomal self-splicing group II introns, which are widely thought to be the ancestors of spliceosomal introns. Next, we discuss the main scenarios proposed for the origin and proliferation of spliceosomal introns, an event intimately linked to eukaryogenesis. We then summarize the evidence that suggests that the last eukaryotic common ancestor (LECA) had remarkably high intron densities and many associated characteristics resembling modern intron-rich genomes. From this intron-rich LECA, the different eukaryotic lineages have taken very distinct evolutionary paths leading to profoundly diverged modern genome structures. Finally, we discuss the origins of alternative splicing and the qualitative differences in alternative splicing forms and functions across lineages. PMID:24890509

  5. Diversity of LFPs Activated in Different Target Regions by a Common CA3 Input.

    PubMed

    Martín-Vázquez, Gonzalo; Benito, Nuria; Makarov, Valeri A; Herreras, Oscar; Makarova, Julia

    2016-10-01

    Identifying the pathways contributing to local field potential (LFP) events and oscillations is essential to determine whether synchronous interregional patterns indicate functional connectivity. Here, we studied experimentally and numerically how different target structures receiving input from a common population shape their LFPs. We focused on the bilateral CA3 that sends gamma-paced excitatory packages to the bilateral CA1, the lateral septum, and itself (recurrent input). The CA3-specific contribution was isolated from multisite LFPs in target regions using spatial discrimination techniques. We found strong modulation of LFPs by target-specific features, including the morphology and population arrangement of cells, the timing of CA3 inputs, volume conduction from nearby targets, and co-activated inhibition. Jointly they greatly affect the LFP amplitude, profile, and frequency characteristics. For instance, ipsilateral (Schaffer) LFPs occluded contralateral ones, and septal LFPs arise mostly from remote sources while local contribution from CA3 input was minor. In the CA3 itself, gamma waves have dual origin from local networks: in-phase excitatory and nearly antiphase inhibitory. Also, waves may have different duration and varying phase in different targets. These results indicate that to explore the cellular basis of LFPs and the functional connectivity between structures, besides identifying the origin population/s, target modifiers should be considered.

  6. Clonal and spatial genetic structures of aspen (Populus tremuloides Michx.).

    PubMed

    Namroud, Marie-Claire; Park, Andrew; Tremblay, Francine; Bergeron, Yves

    2005-09-01

    To portray aspen clonal and spatial genetic structures, we mapped and genotyped trees in two 1-ha plots, each containing three aspen cohorts originating from fire or subsequent secondary disturbances. We used four microsatellite loci to identify aspen clones and increment core analysis to determine tree age. Clonal dimensions were measured by the maximum distance between two ramets and the number of ramets per genet. Standard normal deviate (SND) was used to assess the spatial distribution of aspen genets and cohorts, and multivariate spatial genetic autocorrelations to assess the spatial distribution of aspen genetic variation. Most aspen genets consisted of only one ramet (> 75%). Median clonal dimensions were 19 and 29 m (maxima: 104 and 72 m in the two plots). No segregation was observed between clones. Aspen cohorts were spatially segregated but trees were spatially aggregated within old and medium-aged cohorts. In contrast, trees were more randomly distributed within the youngest cohorts. This coincided with a spatial genetic autocorrelation at small scales (up to 30 m) in the older cohorts and a more random genetic distribution in the youngest ones. Our results suggest that aspen spatial genetic structuring reflects the spatial patterns produced by the regeneration of discrete cohorts at different stages of succession. Vegetative reproduction leads to aspen genetic spatial structuring at small scales (few metres) until midsuccession. However, as the stand gets older, the spatial distribution of aspen trees and genetic structure evolve from a structured pattern to a more random one under a gap disturbances regime.

  7. Spatial Data Supply Chains

    NASA Astrophysics Data System (ADS)

    Varadharajulu, P.; Azeem Saqiq, M.; Yu, F.; McMeekin, D. A.; West, G.; Arnold, L.; Moncrieff, S.

    2015-06-01

    This paper describes current research into the supply of spatial data to the end user in as close to real time as possible via the World Wide Web. The Spatial Data Infrastructure paradigm has been discussed since the early 1990s. The concept has evolved significantly since then but has almost always examined data from the perspective of the supplier. It has been a supplier driven focus rather than a user driven focus. The current research being conducted is making a paradigm shift and looking at the supply of spatial data as a supply chain, similar to a manufacturing supply chain in which users play a significant part. A comprehensive consultation process took place within Australia and New Zealand incorporating a large number of stakeholders. Three research projects that have arisen from this consultation process are examining Spatial Data Supply Chains within Australia and New Zealand and are discussed within this paper.

  8. Spatially Distributed Cell Signalling

    PubMed Central

    Kholodenko, Boris N.

    2009-01-01

    Emerging evidence indicates that complex spatial gradients and (micro)domains of signalling activities arise from distinct cellular localization of opposing enzymes, such as a kinase and phosphatase, in signal transduction cascades. Often, an interacting, active form of a target protein has a lower diffusivity than an inactive form, and this leads to spatial gradients of the protein abundance in the cytoplasm. A spatially distributed signalling cascade can create step-like activation profiles, which decay at successive distances from the cell surface, assigning digital positional information to different regions in the cell. Feedback and feedforward network motifs control activity patterns, allowing signalling networks to serve as cellular devices for spatial computations. PMID:19800332

  9. Geologic spatial analysis

    SciTech Connect

    Thiessen, R.L.; Eliason, J.R.

    1989-01-01

    This report describes the development of geologic spatial analysis research which focuses on conducting comprehensive three-dimensional analysis of regions using geologic data sets that can be referenced by latitude, longitude, and elevation/depth. (CBS)

  10. Integrated spatial light modulator

    NASA Astrophysics Data System (ADS)

    Yu, Dong X.; Storti, George M.; Wrigley, Charles Y.

    1992-08-01

    We described here an integrated spatial light modulator (SLM) employing Quantex electron trapping (ET) materials. The light modulation is accomplished by emission of ET material, upon incident coherent infrared light, where a pattern is written to by previous visible light excitation. The ET based spatial light modulators offer unique advantages over other SLM devices, such as capability of converting incoherent input to coherent light output and of integrating the modulator, the photodetector, and the memory into a single, rugged unit.

  11. Spatial filter issues

    SciTech Connect

    Murray, J.E.; Estabrook, K.G.; Milam, D.; Sell, W.D.; Van Wonterghem, R.M.; Feil, M.D.; Rubenchick, A.M.

    1996-12-09

    Experiments and calculations indicate that the threshold pressure in spatial filters for distortion of a transmitted pulse scales approximately as I{sup O.2} and (F{number_sign}){sup 2} over the intensity range from 10{sup 14} to 2xlO{sup 15} W/CM{sup 2} . We also demonstrated an interferometric diagnostic that will be used to measure the scaling relationships governing pinhole closure in spatial filters.

  12. Embodied spatial cognition.

    PubMed

    Trafton, J Gregory; Harrison, Anthony M

    2011-10-01

    We present a spatial system called Specialized Egocentrically Coordinated Spaces embedded in an embodied cognitive architecture (ACT-R Embodied). We show how the spatial system works by modeling two different developmental findings: gaze-following and Level 1 perspective taking. The gaze-following model is based on an experiment by Corkum and Moore (1998), whereas the Level 1 visual perspective-taking model is based on an experiment by Moll and Tomasello (2006). The models run on an embodied robotic system.

  13. Common Variants for Heart Failure

    PubMed Central

    Shen, Shutong; Tao, Lichan; Wang, Xiuzhi; Kong, Xiangqing; Li, Xinli

    2015-01-01

    Heart failure (HF) is a common disease with high morbidity and mortality; however, none of the drugs available are now entirely optimal for the treatment of HF. In addition to various clinical diseases and environment influences, genetic factors also contribute to the development and progression of HF. Identifying the common variants for HF by genome-wide association studies will facilitate the understanding of pathophysiological mechanisms underlying HF. This review summarizes the recently identified common variants for HF risk and outcome and discusses their implications for the clinic therapy. PMID:26085806

  14. Common-offset ray tracing

    SciTech Connect

    Jannaud, L.R.

    1994-12-31

    In the SMART method, exact traveltimes, used as input of reflection tomography, are computed by tracing rays that are reflected on interpreted migrated events. Since picking migrated events is easier in common offset migrated images than in common shot migrated images, a common offset raytracing has been developed. It is based on a continuation method in the source position-shooting angle domain. It consists in following in this domain iso-offset lines and determining the points of these lines corresponding to the actual sources. It allows the user to compute all the arrivals even for complex media at a low computational cost.

  15. Focal plane scanner with reciprocating spatial window

    NASA Technical Reports Server (NTRS)

    Mao, Chengye (Inventor)

    2000-01-01

    A focal plane scanner having a front objective lens, a spatial window for selectively passing a portion of the image therethrough, and a CCD array for receiving the passed portion of the image. All embodiments have a common feature whereby the spatial window and CCD array are mounted for simultaneous relative reciprocating movement with respect to the front objective lens, and the spatial window is mounted within the focal plane of the front objective. In a first embodiment, the spatial window is a slit and the CCD array is one-dimensional, and successive rows of the image in the focal plane of the front objective lens are passed to the CCD array by an image relay lens interposed between the slit and the CCD array. In a second embodiment, the spatial window is a slit, the CCD array is two-dimensional, and a prism-grating-prism optical spectrometer is interposed between the slit and the CCD array so as to cause the scanned row to be split into a plurality of spectral separations onto the CCD array. In a third embodiment, the CCD array is two-dimensional and the spatial window is a rectangular linear variable filter (LVF) window, so as to cause the scanned rows impinging on the LVF to be bandpass filtered into spectral components onto the CCD array through an image relay lens interposed between the LVF and the CCD array.

  16. Spatial network surrogates for disentangling complex system structure from spatial embedding of nodes.

    PubMed

    Wiedermann, Marc; Donges, Jonathan F; Kurths, Jürgen; Donner, Reik V

    2016-04-01

    Networks with nodes embedded in a metric space have gained increasing interest in recent years. The effects of spatial embedding on the networks' structural characteristics, however, are rarely taken into account when studying their macroscopic properties. Here, we propose a hierarchy of null models to generate random surrogates from a given spatially embedded network that can preserve certain global and local statistics associated with the nodes' embedding in a metric space. Comparing the original network's and the resulting surrogates' global characteristics allows one to quantify to what extent these characteristics are already predetermined by the spatial embedding of the nodes and links. We apply our framework to various real-world spatial networks and show that the proposed models capture macroscopic properties of the networks under study much better than standard random network models that do not account for the nodes' spatial embedding. Depending on the actual performance of the proposed null models, the networks are categorized into different classes. Since many real-world complex networks are in fact spatial networks, the proposed approach is relevant for disentangling the underlying complex system structure from spatial embedding of nodes in many fields, ranging from social systems over infrastructure and neurophysiology to climatology. PMID:27176313

  17. Spatial network surrogates for disentangling complex system structure from spatial embedding of nodes.

    PubMed

    Wiedermann, Marc; Donges, Jonathan F; Kurths, Jürgen; Donner, Reik V

    2016-04-01

    Networks with nodes embedded in a metric space have gained increasing interest in recent years. The effects of spatial embedding on the networks' structural characteristics, however, are rarely taken into account when studying their macroscopic properties. Here, we propose a hierarchy of null models to generate random surrogates from a given spatially embedded network that can preserve certain global and local statistics associated with the nodes' embedding in a metric space. Comparing the original network's and the resulting surrogates' global characteristics allows one to quantify to what extent these characteristics are already predetermined by the spatial embedding of the nodes and links. We apply our framework to various real-world spatial networks and show that the proposed models capture macroscopic properties of the networks under study much better than standard random network models that do not account for the nodes' spatial embedding. Depending on the actual performance of the proposed null models, the networks are categorized into different classes. Since many real-world complex networks are in fact spatial networks, the proposed approach is relevant for disentangling the underlying complex system structure from spatial embedding of nodes in many fields, ranging from social systems over infrastructure and neurophysiology to climatology.

  18. Spatial network surrogates for disentangling complex system structure from spatial embedding of nodes

    NASA Astrophysics Data System (ADS)

    Wiedermann, Marc; Donges, Jonathan F.; Kurths, Jürgen; Donner, Reik V.

    2016-04-01

    Networks with nodes embedded in a metric space have gained increasing interest in recent years. The effects of spatial embedding on the networks' structural characteristics, however, are rarely taken into account when studying their macroscopic properties. Here, we propose a hierarchy of null models to generate random surrogates from a given spatially embedded network that can preserve certain global and local statistics associated with the nodes' embedding in a metric space. Comparing the original network's and the resulting surrogates' global characteristics allows one to quantify to what extent these characteristics are already predetermined by the spatial embedding of the nodes and links. We apply our framework to various real-world spatial networks and show that the proposed models capture macroscopic properties of the networks under study much better than standard random network models that do not account for the nodes' spatial embedding. Depending on the actual performance of the proposed null models, the networks are categorized into different classes. Since many real-world complex networks are in fact spatial networks, the proposed approach is relevant for disentangling the underlying complex system structure from spatial embedding of nodes in many fields, ranging from social systems over infrastructure and neurophysiology to climatology.

  19. The origin, source, and cycling of methane in deep crystalline rock biosphere.

    PubMed

    Kietäväinen, Riikka; Purkamo, Lotta

    2015-01-01

    The emerging interest in using stable bedrock formations for industrial purposes, e.g., nuclear waste disposal, has increased the need for understanding microbiological and geochemical processes in deep crystalline rock environments, including the carbon cycle. Considering the origin and evolution of life on Earth, these environments may also serve as windows to the past. Various geological, chemical, and biological processes can influence the deep carbon cycle. Conditions of CH4 formation, available substrates and time scales can be drastically different from surface environments. This paper reviews the origin, source, and cycling of methane in deep terrestrial crystalline bedrock with an emphasis on microbiology. In addition to potential formation pathways of CH4, microbial consumption of CH4 is also discussed. Recent studies on the origin of CH4 in continental bedrock environments have shown that the traditional separation of biotic and abiotic CH4 by the isotopic composition can be misleading in substrate-limited environments, such as the deep crystalline bedrock. Despite of similarities between Precambrian continental sites in Fennoscandia, South Africa and North America, where deep methane cycling has been studied, common physicochemical properties which could explain the variation in the amount of CH4 and presence or absence of CH4 cycling microbes were not found. However, based on their preferred carbon metabolism, methanogenic microbes appeared to have similar spatial distribution among the different sites. PMID:26236303

  20. The origin, source, and cycling of methane in deep crystalline rock biosphere

    PubMed Central

    Kietäväinen, Riikka; Purkamo, Lotta

    2015-01-01

    The emerging interest in using stable bedrock formations for industrial purposes, e.g., nuclear waste disposal, has increased the need for understanding microbiological and geochemical processes in deep crystalline rock environments, including the carbon cycle. Considering the origin and evolution of life on Earth, these environments may also serve as windows to the past. Various geological, chemical, and biological processes can influence the deep carbon cycle. Conditions of CH4 formation, available substrates and time scales can be drastically different from surface environments. This paper reviews the origin, source, and cycling of methane in deep terrestrial crystalline bedrock with an emphasis on microbiology. In addition to potential formation pathways of CH4, microbial consumption of CH4 is also discussed. Recent studies on the origin of CH4 in continental bedrock environments have shown that the traditional separation of biotic and abiotic CH4 by the isotopic composition can be misleading in substrate-limited environments, such as the deep crystalline bedrock. Despite of similarities between Precambrian continental sites in Fennoscandia, South Africa and North America, where deep methane cycling has been studied, common physicochemical properties which could explain the variation in the amount of CH4 and presence or absence of CH4 cycling microbes were not found. However, based on their preferred carbon metabolism, methanogenic microbes appeared to have similar spatial distribution among the different sites. PMID:26236303