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  1. Design optimization methods for genomic DNA tiling arrays.

    PubMed

    Bertone, Paul; Trifonov, Valery; Rozowsky, Joel S; Schubert, Falk; Emanuelsson, Olof; Karro, John; Kao, Ming-Yang; Snyder, Michael; Gerstein, Mark

    2006-02-01

    A recent development in microarray research entails the unbiased coverage, or tiling, of genomic DNA for the large-scale identification of transcribed sequences and regulatory elements. A central issue in designing tiling arrays is that of arriving at a single-copy tile path, as significant sequence cross-hybridization can result from the presence of non-unique probes on the array. Due to the fragmentation of genomic DNA caused by the widespread distribution of repetitive elements, the problem of obtaining adequate sequence coverage increases with the sizes of subsequence tiles that are to be included in the design. This becomes increasingly problematic when considering complex eukaryotic genomes that contain many thousands of interspersed repeats. The general problem of sequence tiling can be framed as finding an optimal partitioning of non-repetitive subsequences over a prescribed range of tile sizes, on a DNA sequence comprising repetitive and non-repetitive regions. Exact solutions to the tiling problem become computationally infeasible when applied to large genomes, but successive optimizations are developed that allow their practical implementation. These include an efficient method for determining the degree of similarity of many oligonucleotide sequences over large genomes, and two algorithms for finding an optimal tile path composed of longer sequence tiles. The first algorithm, a dynamic programming approach, finds an optimal tiling in linear time and space; the second applies a heuristic search to reduce the space complexity to a constant requirement. A Web resource has also been developed, accessible at http://tiling.gersteinlab.org, to generate optimal tile paths from user-provided DNA sequences.

  2. Controlled nucleation and growth of DNA tile arrays within prescribed DNA origami frames and their dynamics.

    PubMed

    Li, Wei; Yang, Yang; Jiang, Shuoxing; Yan, Hao; Liu, Yan

    2014-03-12

    Controlled nucleation of nanoscale building blocks by geometrically defined seeds implanted in DNA nanoscaffolds represents a unique strategy to study and understand the dynamic processes of molecular self-assembly. Here we utilize a two-dimensional DNA origami frame with a hollow interior and selectively positioned DNA hybridization seeds to control the self-assembly of DNA tile building blocks, where the small DNA tiles are directed to fill the interior of the frame through prescribed sticky end interactions. This design facilitates the construction of DNA origami/array hybrids that adopt the overall shape and dimensions of the origami frame, forming a 2D array in the core consisting of a large number of simple repeating DNA tiles. The formation of the origami/array hybrid was characterized with atomic force microscopy, and the nucleation dynamics were monitored by serial AFM scanning and fluorescence spectroscopy, which revealed faster kinetics of growth within the frame as compared to growth without the presence of a frame. Our study provides insight into the fundamental behavior of DNA-based self-assembling systems. PMID:24575893

  3. Aerodynamic heating in gaps of thermal protection system tile arrays in laminar and turbulent boundary layers

    NASA Technical Reports Server (NTRS)

    Avery, D. E.

    1978-01-01

    An experimental heat-transfer investigation was conducted on two staggered arrays of metallic tiles in laminar and turbulent boundary layers. This investigation was conducted for two purposes. The impingement heating distribution where flow in a longitudinal gap intersects a transverse gap and impinges on a downstream blocking tile was defined. The influence of tile and gap geometries was analyzed to develop empirical relationships for impingement heating in laminar and turbulent boundary layers. Tests were conducted in a high temperature structures tunnel at a nominal Mach number of 7, a nominal total temperature of 1800 K, and free-stream unit Reynolds numbers from 1.0 x 10 million to 4.8 x 10 million per meter. The test results were used to assess the impingement heating effects produced by parameters that include gap width, longitudinal gap length, slope of the tile forward-facing wall, boundary-layer displacement thickness, Reynolds number, and local surface pressure.

  4. Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis

    PubMed Central

    Tomazou, Eleni M; Rakyan, Vardhman K; Lefebvre, Gregory; Andrews, Robert; Ellis, Peter; Jackson, David K; Langford, Cordelia; Francis, Matthew D; Bäckdahl, Liselotte; Miretti, Marcos; Coggill, Penny; Ottaviani, Diego; Sheer, Denise; Murrell, Adele; Beck, Stephan

    2008-01-01

    Background The major histocompatibility complex (MHC) is essential for human immunity and is highly associated with common diseases, including cancer. While the genetics of the MHC has been studied intensively for many decades, very little is known about the epigenetics of this most polymorphic and disease-associated region of the genome. Methods To facilitate comprehensive epigenetic analyses of this region, we have generated a genomic tiling array of 2 Kb resolution covering the entire 4 Mb MHC region. The array has been designed to be compatible with chromatin immunoprecipitation (ChIP), methylated DNA immunoprecipitation (MeDIP), array comparative genomic hybridization (aCGH) and expression profiling, including of non-coding RNAs. The array comprises 7832 features, consisting of two replicates of both forward and reverse strands of MHC amplicons and appropriate controls. Results Using MeDIP, we demonstrate the application of the MHC array for DNA methylation profiling and the identification of tissue-specific differentially methylated regions (tDMRs). Based on the analysis of two tissues and two cell types, we identified 90 tDMRs within the MHC and describe their characterisation. Conclusion A tiling array covering the MHC region was developed and validated. Its successful application for DNA methylation profiling indicates that this array represents a useful tool for molecular analyses of the MHC in the context of medical genomics. PMID:18513384

  5. SEMICONDUCTOR INTEGRATED CIRCUITS: Design for an IO block array in a tile-based FPGA

    NASA Astrophysics Data System (ADS)

    Guangxin, Ding; Lingdou, Chen; Zhongli, Liu

    2009-08-01

    A design for an IO block array in a tile-based FPGA is presented. Corresponding with the characteristics of the FPGA, each IO cell is composed of a signal path, local routing pool and configurable input/output buffers. Shared programmable registers in the signal path can be configured for the function of JTAG, without specific boundary scan registers/latches, saving layout area. The local routing pool increases the flexibility of routing and the routability of the whole FPGA. An auxiliary power supply is adopted to increase the performance of the IO buffers at different configured IO standards. The organization of the IO block array is described in an architecture description file, from which the array layout can be accomplished through use of an automated layout assembly tool. This design strategy facilitates the design of FPGAs with different capacities or architectures in an FPGA family series. The bond-out schemes of the same FPGA chip in different packages are also considered. The layout is based on SMIC 0.13 μm logic 1P8M salicide 1.2/2.5 V CMOS technology. Our performance is comparable with commercial SRAM-based FPGAs which use a similar process.

  6. chipD: a web tool to design oligonucleotide probes for high-density tiling arrays

    PubMed Central

    Dufour, Yann S.; Wesenberg, Gary E.; Tritt, Andrew J.; Glasner, Jeremy D.; Perna, Nicole T.; Mitchell, Julie C.; Donohue, Timothy J.

    2010-01-01

    chipD is a web server that facilitates design of DNA oligonucleotide probes for high-density tiling arrays, which can be used in a number of genomic applications such as ChIP-chip or gene-expression profiling. The server implements a probe selection algorithm that takes as an input, in addition to the target sequences, a set of parameters that allow probe design to be tailored to specific applications, protocols or the array manufacturer’s requirements. The algorithm optimizes probes to meet three objectives: (i) probes should be specific; (ii) probes should have similar thermodynamic properties; and (iii) the target sequence coverage should be homogeneous and avoid significant gaps. The output provides in a text format, the list of probe sequences with their genomic locations, targeted strands and hybridization characteristics. chipD has been used successfully to design tiling arrays for bacteria and yeast. chipD is available at http://chipd.uwbacter.org/. PMID:20529880

  7. Pressure gradient effects on heat transfer to reusable surface insulation tile-array gaps

    NASA Technical Reports Server (NTRS)

    Throckmorton, D. A.

    1975-01-01

    An experimental investigation was performed to determine the effect of pressure gradient on the heat transfer within space shuttle reusable surface insulation (RSI) tile-array gaps under thick, turbulent boundary-layer conditions. Heat-transfer and pressure measurements were obtained on a curved array of full-scale simulated RSI tiles in a tunnel-wall boundary layer at a nominal free-stream Mach number and free-stream Reynolds numbers. Transverse pressure gradients of varying degree were induced over the model surface by rotating the curved array with respect to the flow. Definition of the tunnel-wall boundary-layer flow was obtained by measurement of boundary-layer pitot pressure profiles, wall pressure, and heat transfer. Flat-plate heat-transfer data were correlated and a method was derived for prediction of heat transfer to a smooth curved surface in the highly three-dimensional tunnel-wall boundary-layer flow. Pressure on the floor of the RSI tile-array gap followed the trends of the external surface pressure. Heat transfer to the surface immediately downstream of a transverse gap is higher than that for a smooth surface at the same location. Heating to the wall of a transverse gap, and immediately downstream of it, at its intersection with a longitudinal gap is significantly greater than that for the simple transverse gap.

  8. X-chromosome tiling path array detection of copy number variants in patients with chromosome X-linked mental retardation

    PubMed Central

    Madrigal, I; Rodríguez-Revenga, L; Armengol, L; González, E; Rodriguez, B; Badenas, C; Sánchez, A; Martínez, F; Guitart, M; Fernández, I; Arranz, JA; Tejada, MI; Pérez-Jurado, LA; Estivill, X; Milà, M

    2007-01-01

    Background Aproximately 5–10% of cases of mental retardation in males are due to copy number variations (CNV) on the X chromosome. Novel technologies, such as array comparative genomic hybridization (aCGH), may help to uncover cryptic rearrangements in X-linked mental retardation (XLMR) patients. We have constructed an X-chromosome tiling path array using bacterial artificial chromosomes (BACs) and validated it using samples with cytogenetically defined copy number changes. We have studied 54 patients with idiopathic mental retardation and 20 controls subjects. Results Known genomic aberrations were reliably detected on the array and eight novel submicroscopic imbalances, likely causative for the mental retardation (MR) phenotype, were detected. Putatively pathogenic rearrangements included three deletions and five duplications (ranging between 82 kb to one Mb), all but two affecting genes previously known to be responsible for XLMR. Additionally, we describe different CNV regions with significant different frequencies in XLMR and control subjects (44% vs. 20%). Conclusion This tiling path array of the human X chromosome has proven successful for the detection and characterization of known rearrangements and novel CNVs in XLMR patients. PMID:18047645

  9. Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays

    NASA Technical Reports Server (NTRS)

    Stolc, Viktor; Samanta, Manoj Pratim; Tongprasit, Waraporn; Sethi, Himanshu; Liang, Shoudan; Nelson, David C.; Hegeman, Adrian; Nelson, Clark; Rancour, David; Bednarek, Sebastian; Ulrich, Eldon L.; Zhao, Qin; Wrobel, Russell L.; Newman, Craig S.; Fox, Brian G.; Phillips, George N Jr; Markley, John L.; Sussman, Michael R.

    2005-01-01

    Using a maskless photolithography method, we produced DNA oligonucleotide microarrays with probe sequences tiled throughout the genome of the plant Arabidopsis thaliana. RNA expression was determined for the complete nuclear, mitochondrial, and chloroplast genomes by tiling 5 million 36-mer probes. These probes were hybridized to labeled mRNA isolated from liquid grown T87 cells, an undifferentiated Arabidopsis cell culture line. Transcripts were detected from at least 60% of the nearly 26,330 annotated genes, which included 151 predicted genes that were not identified previously by a similar genome-wide hybridization study on four different cell lines. In comparison with previously published results with 25-mer tiling arrays produced by chromium masking-based photolithography technique, 36-mer oligonucleotide probes were found to be more useful in identifying intron-exon boundaries. Using two-dimensional HPLC tandem mass spectrometry, a small-scale proteomic analysis was performed with the same cells. A large amount of strongly hybridizing RNA was found in regions "antisense" to known genes. Similarity of antisense activities between the 25-mer and 36-mer data sets suggests that it is a reproducible and inherent property of the experiments. Transcription activities were also detected for many of the intergenic regions and the small RNAs, including tRNA, small nuclear RNA, small nucleolar RNA, and microRNA. Expression of tRNAs correlates with genome-wide amino acid usage.

  10. Technical note: comparing von Luschan skin color tiles and modern spectrophotometry for measuring human skin pigmentation.

    PubMed

    Swiatoniowski, Anna K; Quillen, Ellen E; Shriver, Mark D; Jablonski, Nina G

    2013-06-01

    Prior to the introduction of reflectance spectrophotometry into anthropological field research during the 1950s, human skin color was most commonly classified by visual skin color matching using the von Luschan tiles, a set of 36 standardized, opaque glass tiles arranged in a chromatic scale. Our goal was to establish a conversion formula between the tile-based color matching method and modern reflectance spectrophotometry to make historical and contemporary data comparable. Skin pigmentation measurements were taken on the forehead, inner upper arms, and backs of the hands using both the tiles and a spectrophotometer on 246 participants showing a broad range of skin pigmentation. From these data, a second-order polynomial conversion formula was derived by jackknife analysis to estimate melanin index (M-index) based on tile values. This conversion formula provides a means for comparing modern data to von Luschan tile measurements recorded in historical reports. This is particularly important for populations now extinct, extirpated, or admixed for which tile-based measures of skin pigmentation are the only data available.

  11. CMARRT: A Tool for the Analysis of ChIP-chip Data from Tiling Arrays by Incorporating the Correlation Structure

    PubMed Central

    Kuan, Pei Fen; Chun, Hyonho; Keleş, Sündüz

    2010-01-01

    Whole genome tiling arrays at a user specified resolution are becoming a versatile tool in genomics. Chromatin immunoprecipitation on microarrays (ChIP-chip) is a powerful application of these arrays. Although there is an increasing number of methods for analyzing ChIP-chip data, perhaps the most simple and commonly used one, due to its computational efficiency, is testing with a moving average statistic. Current moving average methods assume exchangeability of the measurements within an array. They are not tailored to deal with the issues due to array designs such as overlapping probes that result in correlated measurements. We investigate the correlation structure of data from such arrays and propose an extension of the moving average testing via a robust and rapid method called CMARRT. We illustrate the pitfalls of ignoring the correlation structure in simulations and a case study. Our approach is implemented as an R package called CMARRT and can be used with any tiling array platform. PMID:18229712

  12. Heat-resistant DNA tile arrays constructed by template-directed photoligation through 5-carboxyvinyl-2′-deoxyuridine

    PubMed Central

    Tagawa, Miho; Shohda, Koh-ichiroh; Fujimoto, Kenzo; Sugawara, Tadashi; Suyama, Akira

    2007-01-01

    Template-directed DNA photoligation has been applied to a method to construct heat-resistant two-dimensional (2D) DNA arrays that can work as scaffolds in bottom-up assembly of functional biomolecules and nano-electronic components. DNA double-crossover AB-staggered (DXAB) tiles were covalently connected by enzyme-free template-directed photoligation, which enables a specific ligation reaction in an extremely tight space and under buffer conditions where no enzymes work efficiently. DNA nanostructures created by self-assembly of the DXAB tiles before and after photoligation have been visualized by high-resolution, tapping mode atomic force microscopy in buffer. The improvement of the heat tolerance of 2D DNA arrays was confirmed by heating and visualizing the DNA nanostructures. The heat-resistant DNA arrays may expand the potential of DNA as functional materials in biotechnology and nanotechnology. PMID:17982178

  13. Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array

    PubMed Central

    Singer, Gregory AC; Wu, Jiejun; Yan, Pearlly; Plass, Christoph; Huang, Tim HM; Davuluri, Ramana V

    2008-01-01

    Background Independent lines of evidence suggested that a large fraction of human genes possess multiple promoters driving gene expression from distinct transcription start sites. Understanding which promoter is employed in which cellular context is required to unravel gene regulatory networks within the cell. Results We have developed a custom microarray platform that tiles roughly 35,000 alternative putative promoters from nearly 7,000 genes in the human genome. To demonstrate the utility of this array platform, we have analyzed the patterns of promoter usage in 17β-estradiol (E2)-treated and untreated MCF7 cells and show widespread usage of alternative promoters. Most intriguingly, we show that the downstream promoter in E2-sensitive multiple promoter genes tends to be very close to the 3'-terminus of the gene, suggesting exotic mechanisms of expression regulation in these genes. Conclusion The usage of alternative promoters greatly multiplies the transcriptional complexity available within the human genome. The fact that many of these promoters are incapable of driving the synthesis of a meaningful protein-encoding transcript further complicates the story. PMID:18655706

  14. Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays

    PubMed Central

    2010-01-01

    Background The identification of non-coding transcripts in human, mouse, and Escherichia coli has revealed their widespread occurrence and functional importance in both eukaryotic and prokaryotic life. In prokaryotes, studies have shown that non-coding transcripts participate in a broad range of cellular functions like gene regulation, stress and virulence. However, very little is known about non-coding transcripts in Streptococcus pneumoniae (pneumococcus), an obligate human respiratory pathogen responsible for significant worldwide morbidity and mortality. Tiling microarrays enable genome wide mRNA profiling as well as identification of novel transcripts at a high-resolution. Results Here, we describe a high-resolution transcription map of the S. pneumoniae clinical isolate TIGR4 using genomic tiling arrays. Our results indicate that approximately 66% of the genome is expressed under our experimental conditions. We identified a total of 50 non-coding small RNAs (sRNAs) from the intergenic regions, of which 36 had no predicted function. Half of the identified sRNA sequences were found to be unique to S. pneumoniae genome. We identified eight overrepresented sequence motifs among sRNA sequences that correspond to sRNAs in different functional categories. Tiling arrays also identified approximately 202 operon structures in the genome. Conclusions In summary, the pneumococcal operon structures and novel sRNAs identified in this study enhance our understanding of the complexity and extent of the pneumococcal 'expressed' genome. Furthermore, the results of this study open up new avenues of research for understanding the complex RNA regulatory network governing S. pneumoniae physiology and virulence. PMID:20525227

  15. Identification of a novel gene by whole human genome tiling array.

    PubMed

    Ishida, Hirokazu; Yagi, Tomohito; Tanaka, Masami; Tokuda, Yuichi; Kamoi, Kazumi; Hongo, Fumiya; Kawauchi, Akihiro; Nakano, Masakazu; Miki, Tsuneharu; Tashiro, Kei

    2013-03-01

    When the whole human genome sequence was determined by the Human Genome Project, the number of identified genes was fewer than expected. However, recent studies suggest that undiscovered transcripts still exist in the human genome. Furthermore, a new technology, the DNA microarray, which can simultaneously characterize huge amounts of genome sequence data, has become a useful tool for analyzing genetic changes in various diseases. A version of this tool, the tiling DNA microarray, was designed to search all the transcripts of the entire human genome, and provides huge amounts of data, including both exon and intron sequences, by a simple process. Although some previous studies using tiling DNA microarray analysis have indicated that numerous novel transcripts can be found in the human genome, none of them has reported any novel full-length human genes. Here, to find novel genes, we analyzed all the transcripts expressed in normal human prostate cells using this microarray. Because the optimal analytical parameters for using tiling DNA microarray data for this purpose had not been established, we established parameters for extracting the most likely regions for novel transcripts. The three parameters we optimized were the threshold for positive signal intensity, the Max gap, and the Min run, which we set to detect all transcriptional regions that were above the average length of known exons and had a signal intensity in the top 5%. We succeeded in obtaining the full-length sequence of one novel gene, located on chromosome 12q24.13. We named the novel gene "POTAGE". Its 5841-bp mRNA consists of 26 exons. We detected part of exon 2 in the tiling data analysis. The full-length sequence was then obtained by RT-PCR and RACE. Although the function of POTAGE is unclear, its sequence showed high homology with genes in other species, suggesting it might have an important or essential function. This study demonstrates that the tiling DNA microarray can be useful for

  16. Aerodynamic heating to the gaps and surfaces of simulated reusable-surface-insulation tile arrays in turbulent flow at Mach 6.6

    NASA Technical Reports Server (NTRS)

    Weinstein, I.; Avery, D. E.; Chapman, A. J.

    1975-01-01

    An experimental investigation was made on a simulated reusable-surface-insulation tile array in a turbulent boundary layer to determine aerodynamic-heating distributions representative of those expected on the surface of the shuttle orbiter during earth entry due to the presence of longitudinal and transverse surface gaps. The tests were conducted in an 8-foot high-temperature structures tunnel in a test medium of methane-air combustion products at a nominal Mach number of 6.6 and over a free-stream Reynolds number range from 2,000,000 to 4,900,000 per meter (600,000 to 1,500,000 per foot). The results were used to assess the aerodynamic heating effects produced by parameters that include gap width, boundary-layer displacement thickness, in-line and staggered tile arrangement, and tile protrusion.

  17. Interference Lattice-based Loop Nest Tilings for Stencil Computations

    NASA Technical Reports Server (NTRS)

    VanderWijngaart, Rob F.; Frumkin, Michael

    2000-01-01

    A common method for improving performance of stencil operations on structured multi-dimensional discretization grids is loop tiling. Tile shapes and sizes are usually determined heuristically, based on the size of the primary data cache. We provide a lower bound on the numbers of cache misses that must be incurred by any tiling, and a close achievable bound using a particular tiling based on the grid interference lattice. The latter tiling is used to derive highly efficient loop orderings. The total number of cache misses of a code is the sum of (necessary) cold misses and misses caused by elements being dropped from the cache between successive loads (replacement misses). Maximizing temporal locality is equivalent to minimizing replacement misses. Temporal locality of loop nests implementing stencil operations is optimized by tilings that avoid data conflicts. We divide the loop nest iteration space into conflict-free tiles, derived from the cache miss equation. The tiling involves the definition of the grid interference lattice an equivalence class of grid points whose images in main memory map to the same location in the cache-and the construction of a special basis for the lattice. Conflicts only occur on the boundaries of the tiles, unless the tiles are too thin. We show that the surface area of the tiles is bounded for grids of any dimensionality, and for caches of any associativity, provided the eccentricity of the fundamental parallelepiped (the tile spanned by the basis) of the lattice is bounded. Eccentricity is determined by two factors, aspect ratio and skewness. The aspect ratio of the parallelepiped can be bounded by appropriate array padding. The skewness can be bounded by the choice of a proper basis. Combining these two strategies ensures that pathologically thin tiles are avoided. They do not, however, minimize replacement misses per se. The reason is that tile visitation order influences the number of data conflicts on the tile boundaries. If two

  18. An experimental investigation of heat transfer to reusable surface insulation tile array gaps in a turbulent boundary layer with pressure gradient. M.S. Thesis

    NASA Technical Reports Server (NTRS)

    Throckmorton, D. A.

    1975-01-01

    An experimental investigation was performed to determine the effect of pressure gradient on the heat transfer to space shuttle reusable surface insulation (RSI) tile array gaps under thick, turbulent boundary layer conditions. Heat transfer and pressure measurements were obtained on a curved array of full-scale simulated RSI tiles in a tunnel wall boundary layer at a nominal freestream Mach number of 10.3 and freestream unit Reynolds numbers of 1.6, 3.3, and and 6.1 million per meter. Transverse pressure gradients were induced over the model surface by rotating the curved array with respect to the flow. Definition of the tunnel wall boundary layer flow was obtained by measurement of boundary layer pitot pressure profiles, and flat plate wall pressure and heat transfer. Flat plate wall heat transfer data were correlated and a method was derived for prediction of smooth, curved array heat transfer in the highly three-dimensional tunnel wall boundary layer flow and simulation of full-scale space shuttle vehicle pressure gradient levels was assessed.

  19. Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data

    PubMed Central

    2010-01-01

    Background Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is an assay used for investigating DNA-protein-binding or post-translational chromatin/histone modifications. As with all high-throughput technologies, it requires thorough bioinformatic processing of the data for which there is no standard yet. The primary goal is to reliably identify and localize genomic regions that bind a specific protein. Further investigation compares binding profiles of functionally related proteins, or binding profiles of the same proteins in different genetic backgrounds or experimental conditions. Ultimately, the goal is to gain a mechanistic understanding of the effects of DNA binding events on gene expression. Results We present a free, open-source R/Bioconductor package Starr that facilitates comparative analysis of ChIP-chip data across experiments and across different microarray platforms. The package provides functions for data import, quality assessment, data visualization and exploration. Starr includes high-level analysis tools such as the alignment of ChIP signals along annotated features, correlation analysis of ChIP signals with complementary genomic data, peak-finding and comparative display of multiple clusters of binding profiles. It uses standard Bioconductor classes for maximum compatibility with other software. Moreover, Starr automatically updates microarray probe annotation files by a highly efficient remapping of microarray probe sequences to an arbitrary genome. Conclusion Starr is an R package that covers the complete ChIP-chip workflow from data processing to binding pattern detection. It focuses on the high-level data analysis, e.g., it provides methods for the integration and combined statistical analysis of binding profiles and complementary functional genomics data. Starr enables systematic assessment of binding behaviour for groups of genes that are alingned along arbitrary genomic features. PMID:20398407

  20. Tiling phosphorene.

    PubMed

    Guan, Jie; Zhu, Zhen; Tománek, David

    2014-12-23

    We present a scheme to categorize the structure of different layered phosphorene allotropes by mapping their nonplanar atomic structure onto a two-color 2D triangular tiling pattern. In the buckled structure of a phosphorene monolayer, we assign atoms in "top" positions to dark tiles and atoms in "bottom" positions to light tiles. Optimum sp3 bonding is maintained throughout the structure when each triangular tile is surrounded by the same number N of like-colored tiles, with 0≤N≤2. Our ab initio density functional calculations indicate that both the relative stability and electronic properties depend primarily on the structural index N. The proposed mapping approach may also be applied to phosphorene structures with nonhexagonal rings and 2D quasicrystals with no translational symmetry, which we predict to be nearly as stable as the hexagonal network.

  1. Tiling Microarray Analysis Tools

    SciTech Connect

    Nix, Davis Austin

    2005-05-04

    TiMAT is a package of 23 command line Java applications for use in the analysis of Affymetrix tiled genomic microarray data. TiMAT enables: 1) Rebuilding the genome annotation for entire tiled arrays (repeat filtering, chromosomal coordinate assignment). 2) Post processing of oligo intensity values (quantile normalization, median scaling, PMMM transformation), 3) Significance testing (Wilcoxon rank sum and signed rank tests, intensity difference and ratio tests) and Interval refinement (filtering based on multiple statistics, overlap comparisons), 4) Data visualization (detailed thumbnail/zoomed view with Interval Plots and data export to Affymetrix's Integrated Genome Browser) and Data reports (spreadsheet summaries and detailed profiles)

  2. Computational Methods for the Analysis of Array Comparative Genomic Hybridization

    PubMed Central

    Chari, Raj; Lockwood, William W.; Lam, Wan L.

    2006-01-01

    Array comparative genomic hybridization (array CGH) is a technique for assaying the copy number status of cancer genomes. The widespread use of this technology has lead to a rapid accumulation of high throughput data, which in turn has prompted the development of computational strategies for the analysis of array CGH data. Here we explain the principles behind array image processing, data visualization and genomic profile analysis, review currently available software packages, and raise considerations for future software development. PMID:17992253

  3. Restriction Site Tiling Analysis: accurate discovery and quantitative genotyping of genome-wide polymorphisms using nucleotide arrays

    PubMed Central

    2010-01-01

    High-throughput genotype data can be used to identify genes important for local adaptation in wild populations, phenotypes in lab stocks, or disease-related traits in human medicine. Here we advance microarray-based genotyping for population genomics with Restriction Site Tiling Analysis. The approach simultaneously discovers polymorphisms and provides quantitative genotype data at 10,000s of loci. It is highly accurate and free from ascertainment bias. We apply the approach to uncover genomic differentiation in the purple sea urchin. PMID:20403197

  4. Small form factor full parallax tiled light field display

    NASA Astrophysics Data System (ADS)

    Alpaslan, Zahir Y.; El-Ghoroury, Hussein S.

    2015-03-01

    With the recent introduction of Ostendo's Quantum Photonic Imager (QPI) display technology, a very small pixel pitch, emissive display with high brightness and low power consumption became available. We used QPI's to create a high performance light field display tiles with a very small form factor. Using 8 of these QPI light field displays tiled in a 4x2 array we created a tiled full parallax light field display. Each individual light field display tile combines custom designed micro lens array layers with monochrome green QPIs. Each of the light field display tiles can address 1000 x 800 pixels placed under an array of 20 x 16 lenslets with 500 μm diameters. The light field display tiles are placed with small gaps to create a tiled display of approximately 46 mm (W) x 17 mm (H) x 2 mm (D) in mechanical dimensions. The prototype tiled full parallax light field display demonstrates small form factor, high resolution and focus cues.

  5. Whole genome transcription profiling of Anaplasma phagocytophilum in human and tick host cells by tiling array analysis

    PubMed Central

    Nelson, Curtis M; Herron, Michael J; Felsheim, Roderick F; Schloeder, Brian R; Grindle, Suzanne M; Chavez, Adela Oliva; Kurtti, Timothy J; Munderloh, Ulrike G

    2008-01-01

    Background Anaplasma phagocytophilum (Ap) is an obligate intracellular bacterium and the agent of human granulocytic anaplasmosis, an emerging tick-borne disease. Ap alternately infects ticks and mammals and a variety of cell types within each. Understanding the biology behind such versatile cellular parasitism may be derived through the use of tiling microarrays to establish high resolution, genome-wide transcription profiles of the organism as it infects cell lines representative of its life cycle (tick; ISE6) and pathogenesis (human; HL-60 and HMEC-1). Results Detailed, host cell specific transcriptional behavior was revealed. There was extensive differential Ap gene transcription between the tick (ISE6) and the human (HL-60 and HMEC-1) cell lines, with far fewer differentially transcribed genes between the human cell lines, and all disproportionately represented by membrane or surface proteins. There were Ap genes exclusively transcribed in each cell line, apparent human- and tick-specific operons and paralogs, and anti-sense transcripts that suggest novel expression regulation processes. Seven virB2 paralogs (of the bacterial type IV secretion system) showed human or tick cell dependent transcription. Previously unrecognized genes and coding sequences were identified, as were the expressed p44/msp2 (major surface proteins) paralogs (of 114 total), through elevated signal produced to the unique hypervariable region of each – 2/114 in HL-60, 3/114 in HMEC-1, and none in ISE6. Conclusion Using these methods, whole genome transcription profiles can likely be generated for Ap, as well as other obligate intracellular organisms, in any host cells and for all stages of the cell infection process. Visual representation of comprehensive transcription data alongside an annotated map of the genome renders complex transcription into discernable patterns. PMID:18671858

  6. Tiling Microarray Analysis Tools

    2005-05-04

    TiMAT is a package of 23 command line Java applications for use in the analysis of Affymetrix tiled genomic microarray data. TiMAT enables: 1) Rebuilding the genome annotation for entire tiled arrays (repeat filtering, chromosomal coordinate assignment). 2) Post processing of oligo intensity values (quantile normalization, median scaling, PMMM transformation), 3) Significance testing (Wilcoxon rank sum and signed rank tests, intensity difference and ratio tests) and Interval refinement (filtering based on multiple statistics, overlap comparisons),more » 4) Data visualization (detailed thumbnail/zoomed view with Interval Plots and data export to Affymetrix's Integrated Genome Browser) and Data reports (spreadsheet summaries and detailed profiles)« less

  7. Empirical covariance modeling for 21 cm power spectrum estimation: A method demonstration and new limits from early Murchison Widefield Array 128-tile data

    NASA Astrophysics Data System (ADS)

    Dillon, Joshua S.; Neben, Abraham R.; Hewitt, Jacqueline N.; Tegmark, Max; Barry, N.; Beardsley, A. P.; Bowman, J. D.; Briggs, F.; Carroll, P.; de Oliveira-Costa, A.; Ewall-Wice, A.; Feng, L.; Greenhill, L. J.; Hazelton, B. J.; Hernquist, L.; Hurley-Walker, N.; Jacobs, D. C.; Kim, H. S.; Kittiwisit, P.; Lenc, E.; Line, J.; Loeb, A.; McKinley, B.; Mitchell, D. A.; Morales, M. F.; Offringa, A. R.; Paul, S.; Pindor, B.; Pober, J. C.; Procopio, P.; Riding, J.; Sethi, S.; Shankar, N. Udaya; Subrahmanyan, R.; Sullivan, I.; Thyagarajan, Nithyanandan; Tingay, S. J.; Trott, C.; Wayth, R. B.; Webster, R. L.; Wyithe, S.; Bernardi, G.; Cappallo, R. J.; Deshpande, A. A.; Johnston-Hollitt, M.; Kaplan, D. L.; Lonsdale, C. J.; McWhirter, S. R.; Morgan, E.; Oberoi, D.; Ord, S. M.; Prabu, T.; Srivani, K. S.; Williams, A.; Williams, C. L.

    2015-06-01

    The separation of the faint cosmological background signal from bright astrophysical foregrounds remains one of the most daunting challenges of mapping the high-redshift intergalactic medium with the redshifted 21 cm line of neutral hydrogen. Advances in mapping and modeling of diffuse and point source foregrounds have improved subtraction accuracy, but no subtraction scheme is perfect. Precisely quantifying the errors and error correlations due to missubtracted foregrounds allows for both the rigorous analysis of the 21 cm power spectrum and for the maximal isolation of the "EoR window" from foreground contamination. We present a method to infer the covariance of foreground residuals from the data itself in contrast to previous attempts at a priori modeling. We demonstrate our method by setting limits on the power spectrum using a 3 h integration from the 128-tile Murchison Widefield Array. Observing between 167 and 198 MHz, we find at 95% confidence a best limit of Δ2(k )<3.7 ×104 mK2 at comoving scale k =0.18 h Mpc-1 and at z =6.8 , consistent with existing limits.

  8. Application of ultrasonics to space shuttle tiles

    SciTech Connect

    Zimmerman, R.M.; Hogenson, P.A.

    1980-01-01

    Two types of discrete sized ceramic tiles bonded to the outer skin of space vehicles are used for the thermal protection of the Space Shuttle during reentry. Failure of any one of the more than 30,000 tiles on the Space Shuttle could have significant effects. Ultrasonic testing to establish the soundness of the Space Shuttle tiles was evaluated and found to be a viable and valuable method. The method is simple, quick, and has a statistical basis. The testing method involves comparing the measured velocities of finished tiles to velocity-tensile strength relationships obtained for coupons. Acceptance criteria can be developed for the computerized data collection and the status of the tile determined automatically. The method was instituted after many tiles were in existence. It is planned that the method be used to determine tile material quality before any machining or finishing is done in an effort to make the system more efficient. (LCL)

  9. Tiling resolution array CGH and high density expression profiling of urothelial carcinomas delineate genomic amplicons and candidate target genes specific for advanced tumors

    PubMed Central

    Heidenblad, Markus; Lindgren, David; Jonson, Tord; Liedberg, Fredrik; Veerla, Srinivas; Chebil, Gunilla; Gudjonsson, Sigurdur; Borg, Åke; Månsson, Wiking; Höglund, Mattias

    2008-01-01

    Background Urothelial carcinoma (UC) is characterized by nonrandom chromosomal aberrations, varying from one or a few changes in early-stage and low-grade tumors, to highly rearranged karyotypes in muscle-invasive lesions. Recent array-CGH analyses have shed further light on the genomic changes underlying the neoplastic development of UC, and have facilitated the molecular delineation amplified and deleted regions to the level of specific candidate genes. In the present investigation we combine detailed genomic information with expression information to identify putative target genes for genomic amplifications. Methods We analyzed 38 urothelial carcinomas by whole-genome tiling resolution array-CGH and high density expression profiling to identify putative target genes in common genomic amplifications. When necessary expression profiling was complemented with Q-PCR of individual genes. Results Three genomic segments were frequently and exclusively amplified in high grade tumors; 1q23, 6p22 and 8q22, respectively. Detailed mapping of the 1q23 segment showed a heterogeneous amplification pattern and no obvious commonly amplified region. The 6p22 amplicon was defined by a 1.8 Mb core region present in all amplifications, flanked both distally and proximally by segments amplified to a lesser extent. By combining genomic profiles with expression profiles we could show that amplification of E2F3, CDKAL1, SOX4, and MBOAT1 as well as NUP153, AOF1, FAM8A1 and DEK in 6p22 was associated with increased gene expression. Amplification of the 8q22 segment was primarily associated with YWHAZ (14-3-3-zeta) and POLR2K over expression. The possible importance of the YWHA genes in the development of urothelial carcinomas was supported by another recurrent amplicon paralogous to 8q22, in 2p25, where increased copy numbers lead to enhanced expression of YWHAQ (14-3-3-theta). Homozygous deletions were identified at 10 different genomic locations, most frequently affecting CDKN2A/CDKN2B

  10. Preassembly Of Insulating Tiles

    NASA Technical Reports Server (NTRS)

    Izu, Y. D.; Yoshioka, E. N.; Rosario, T.

    1988-01-01

    Concept for preassembling high-temperature insulating tiles speeds and simplifies installation and repair and reduces damage from handling. Preassembly concept facilitates placement of tiles on gently contoured surfaces as well as on flat ones. Tiles bonded to nylon mesh with room-temperature-vulcanizing silicon rubber. Spacing between tiles is 0.03 in. Applications include boilers, kilns, and furnaces.

  11. Interlocking wettable ceramic tiles

    SciTech Connect

    Tabereaux, Jr., Alton T.; Fredrickson, Guy L.; Groat, Eric; Mroz, Thomas; Ulicny, Alan; Walker, Mark F.

    2005-03-08

    An electrolytic cell for the reduction of aluminum having a layer of interlocking cathode tiles positioned on a cathode block. Each tile includes a main body and a vertical restraining member to prevent movement of the tiles away from the cathode block during operation of the cell. The anode of the electrolytic cell may be positioned about 1 inch from the interlocking cathode tiles.

  12. Image Composition Engine for Tiles

    2011-08-22

    The Image Composition Engine for Tiles (lceT) is a high-performance sort-last parallel rendering library. It is designed to be used in parallel applications requiring rendering. The primary purpose of IceT is to be integrated into parallel visualization applications such as ParaView to provide parallel rendering capabilities. The Image Composition Engine for Tiles (lceT) is a high-performance sort-last parallel rendering library. IceT uses a "sort-Iasf' approach to rendering. Each process in a parallel application independently rendersmore » a local piece of geometry. The resulting images are given to IceT, and IceT combines the images together to form a single cohesive image. Ice T is also capable of driving tiled displays, largeformat displays comprising an array of smaller displays. To this end IceT can collect the smaller tile images and organize them such that the entire tiled display can be driven. Ice T takes advantage of spatial coherence in geometry by identifying empty regions of the display and reducing the overall required work.« less

  13. Image Composition Engine for Tiles

    SciTech Connect

    Moreland, Kenneth

    2011-08-22

    The Image Composition Engine for Tiles (lceT) is a high-performance sort-last parallel rendering library. It is designed to be used in parallel applications requiring rendering. The primary purpose of IceT is to be integrated into parallel visualization applications such as ParaView to provide parallel rendering capabilities. The Image Composition Engine for Tiles (lceT) is a high-performance sort-last parallel rendering library. IceT uses a "sort-Iasf' approach to rendering. Each process in a parallel application independently renders a local piece of geometry. The resulting images are given to IceT, and IceT combines the images together to form a single cohesive image. Ice T is also capable of driving tiled displays, largeformat displays comprising an array of smaller displays. To this end IceT can collect the smaller tile images and organize them such that the entire tiled display can be driven. Ice T takes advantage of spatial coherence in geometry by identifying empty regions of the display and reducing the overall required work.

  14. A comparative study of the radiation hardness of plastic scintillators for the upgrade of the Tile Calorimeter of the ATLAS detector

    NASA Astrophysics Data System (ADS)

    Liao, S.; Erasmus, R.; Jivan, H.; Pelwan, C.; Peters, G.; Sideras-Haddad, E.

    2015-10-01

    The influence of radiation on the light transmittance of plastic scintillators was studied experimentally. The high optical transmittance property of plastic scintillators makes them essential in the effective functioning of the Tile calorimeter of the ATLAS detector at CERN. This significant role played by the scintillators makes this research imperative in the movement towards the upgrade of the tile calorimeter. The radiation damage of polyvinyl toluene (PVT) based plastic scintillators was studied, namely, EJ-200, EJ-208 and EJ-260, all manufactured and provided to us by ELJEN technology. In addition, in order to compare to scintillator brands actually in use at the ATLAS detector currently, two polystyrene (PS) based scintillators and an additional PVT based scintillator were also scrutinized in this study, namely, Dubna, Protvino and Bicron, respectively. All the samples were irradiated using a 6 MeV proton beam at different doses at iThemba LABS Gauteng. The radiation process was planned and mimicked by doing simulations using a SRIM program. In addition, transmission spectra for the irradiated and unirradiated samples of each grade were obtained, observed and analyzed.

  15. Repairing ceramic insulating tiles

    NASA Technical Reports Server (NTRS)

    Dunn, B. R.; Laymance, E. L.

    1980-01-01

    Fused-silica tiles containing large voids or gauges are repaired without adhesives by plug insertion method. Tiles are useful in conduits for high-temperature gases, in furnaces, and in other applications involving heat insulation.

  16. Handmade Tile Mosaics

    ERIC Educational Resources Information Center

    Keeler, Rusty

    2007-01-01

    Just like the classroom, children's outdoor environments should be filled with artistic creations that add sparkle and imagination to the space. One of the author's favorite ways to add art to the outdoors is by installing a mosaic mural of child-made tiles. The process of making the tiles is fun for all; each tile is a charming work of art in…

  17. Fibonacci words, hyperbolic tilings and grossone

    NASA Astrophysics Data System (ADS)

    Margenstern, Maurice

    2015-04-01

    In this paper, we study the contribution of the theory of grossone to the study of infinite Fibonacci words, combining this tool with the help of a particular tiling of the hyperbolic plane: the tiling { 7, 3 } , called the heptagrid. With the help of the numeral system based on grossone, we obtain a richer family of infinite Fibonacci words compared with the traditional approach.

  18. Boeing's High Voltage Solar Tile Test Results

    NASA Technical Reports Server (NTRS)

    Reed, Brian J.; Harden, David E.; Ferguson, Dale C.; Snyder, David B.

    2002-01-01

    Real concerns of spacecraft charging and experience with solar array augmented electrostatic discharge arcs on spacecraft have minimized the use of high voltages on large solar arrays despite numerous vehicle system mass and efficiency advantages. Boeing's solar tile (patent pending) allows high voltage to be generated at the array without the mass and efficiency losses of electronic conversion. Direct drive electric propulsion and higher power payloads (lower spacecraft weight) will benefit from this design. As future power demand grows, spacecraft designers must use higher voltage to minimize transmission loss and power cable mass for very large area arrays. This paper will describe the design and discuss the successful test of Boeing's 500-Volt Solar Tile in NASA Glenn's Tenney chamber in the Space Plasma Interaction Facility. The work was sponsored by NASA's Space Solar Power Exploratory Research and Technology (SERT) Program and will result in updated high voltage solar array design guidelines being published.

  19. Solar-energy treatment of ceramic tile. Final report

    SciTech Connect

    Harris, J.N.; Clayton, M.E.

    1981-12-01

    The 400 kW Advanced Components Test Facility was used to provide a concentrated source of solar energy for firing ceramic wall tile. A domed top cylindrical cavity with a white refractory fiber lining provided diffuse reflection of the concentrated solar beam directly onto the upper surface of the unfired wall tile. The tile were placed directly on the cavity floor in a circular pattern, centered at 45/sup 0/ intervals so that eight tile could be fired at one time. The tile and cavity walls were instrumented with thermocouples, and pyrometric cones were used to determine temperature distribution within the cavity. The glazed and unglazed solar fired tiles were subjected to standard ceramic testing procedures to determine: flatness, modulus of rupture, water absorption, porosity, bulk density, apparent specific gravity, percent linear thermal expansion and crystalline phases present in the fired bodies. These data were compared with the same data for commercial fired tiles from the same batch of raw materials. The glazed tile surfaces were compared with commercially fired tile for reflectance and color match. The major problems encountered were: cracking by thermal shock, and uneven shrinkage and glaze maturity across individual tile. The cavity also failed to provide even heating at all eight tile positions. An alternate air heat exchanger system is recommended to fire the tile by convection rather than direct radiation.

  20. Comparing viewer and array mental rotations in different planes

    NASA Technical Reports Server (NTRS)

    Carpenter, M.; Proffitt, D. R.; Kaiser, M. K. (Principal Investigator)

    2001-01-01

    Participants imagined rotating either themselves or an array of objects that surrounded them. Their task was to report on the egocentric position of an item in the array following the imagined rotation. The dependent measures were response latency and number of errors committed. Past research has shown that self-rotation is easier than array rotation. However, we found that imagined egocentric rotations were as difficult to imagine as rotations of the environment when people performed imagined rotations in the midsagittal or coronal plane. The advantages of imagined self-rotations are specific to mental rotations performed in the transverse plane.

  1. Array comparative genomic hybridization in retinoma and retinoblastoma tissues.

    PubMed

    Sampieri, Katia; Amenduni, Mariangela; Papa, Filomena Tiziana; Katzaki, Eleni; Mencarelli, Maria Antonietta; Marozza, Annabella; Epistolato, Maria Carmela; Toti, Paolo; Lazzi, Stefano; Bruttini, Mirella; De Filippis, Roberta; De Francesco, Sonia; Longo, Ilaria; Meloni, Ilaria; Mari, Francesca; Acquaviva, Antonio; Hadjistilianou, Theodora; Renieri, Alessandra; Ariani, Francesca

    2009-03-01

    In retinoblastoma, two RB1 mutations are necessary for tumor development. Recurrent genomic rearrangements may represent subsequent events required for retinoblastoma progression. Array-comparative genomic hybridization was carried out in 18 eye samples, 10 from bilateral and eight from unilateral retinoblastoma patients. Two unilateral cases also showed areas of retinoma. The most frequent imbalance in retinoblastomas was 6p gain (40%), followed by gains at 1q12-q25.3, 2p24.3-p24.2, 9q22.2, and 9q33.1 and losses at 11q24.3, 13q13.2-q22.3, and 16q12.1-q21. Bilateral cases showed a lower number of imbalances than unilateral cases (P = 0.002). Unilateral cases were divided into low-level (< or = 4) and high-level (> or = 7) chromosomal instability groups. The first group presented with younger age at diagnosis (mean 511 days) compared with the second group (mean 1606 days). In one retinoma case ophthalmoscopically diagnosed as a benign lesion no rearrangements were detected, whereas the adjacent retinoblastoma displayed seven aberrations. The other retinoma case identified by retrospective histopathological examination shared three rearrangements with the adjacent retinoblastoma. Two other gene-free rearrangements were retinoma specific. One rearrangement, dup5p, was retinoblastoma specific and included the SKP2 gene. Genomic profiling indicated that the first retinoma was a pretumoral lesion, whereas the other represents a subclone of cells bearing 'benign' rearrangements overwhelmed by another subclone presenting aberrations with higher 'oncogenic' potential. In summary, the present study shows that bilateral and unilateral retinoblastoma have different chromosomal instability that correlates with the age of tumor onset in unilateral cases. This is the first report of genomic profiling in retinoma tissue, shedding light on the different nature of lesions named 'retinoma'.

  2. A Comparative Study of Inspection Techniques for Array Packages

    NASA Technical Reports Server (NTRS)

    Mohammed, Jelila; Green, Christopher

    2008-01-01

    This viewgraph presentation reviews the inspection techniques for Column Grid Array (CGA) packages. The CGA is a method of chip scale packaging using high temperature solder columns to attach part to board. It is becoming more popular over other techniques (i.e. quad flat pack (QFP) or ball grid array (BGA)). However there are environmental stresses and workmanship challenges that require good inspection techniques for these packages.

  3. Rewaterproofing Silica Tiles

    NASA Technical Reports Server (NTRS)

    Lleger, L. J.; Wade, D. C.

    1983-01-01

    Waterproofing agent, vaporized in bubbler transported by gas flowing in system and deposits in pores of tiles. Vapor carried through hole of approximately 1/16 inch (1.6.mm) diameter made in tile coating. Technique used to waterproof buildups (concrete and brick) and possibly fabrics.

  4. Tile densification with TEOS

    NASA Technical Reports Server (NTRS)

    Ecord, G. M.; Schomburg, C.

    1981-01-01

    Densification process uses brushed or sprayed coating of tetraethyl orthosilicate. Liquid is applied and cured in three steps; tile weight increase averages 0.15 g per square centimeter. TEOS liquid is prepared by mixing TEOS with hydrochloric acid and adding marking dye. TEOS application provides variable stiffness, strength, and penetration. Surface of tile shows no buidup and is more durable for additional coatings.

  5. Identification of Genome-Wide Mutations in Ciprofloxacin-Resistant F. tularensis LVS Using Whole Genome Tiling Arrays and Next Generation Sequencing

    PubMed Central

    Jaing, Crystal J.; McLoughlin, Kevin S.; Thissen, James B.; Zemla, Adam; Vergez, Lisa M.; Bourguet, Feliza; Mabery, Shalini; Fofanov, Viacheslav Y.; Koshinsky, Heather; Jackson, Paul J.

    2016-01-01

    Francisella tularensis is classified as a Class A bioterrorism agent by the U.S. government due to its high virulence and the ease with which it can be spread as an aerosol. It is a facultative intracellular pathogen and the causative agent of tularemia. Ciprofloxacin (Cipro) is a broad spectrum antibiotic effective against Gram-positive and Gram-negative bacteria. Increased Cipro resistance in pathogenic microbes is of serious concern when considering options for medical treatment of bacterial infections. Identification of genes and loci that are associated with Ciprofloxacin resistance will help advance the understanding of resistance mechanisms and may, in the future, provide better treatment options for patients. It may also provide information for development of assays that can rapidly identify Cipro-resistant isolates of this pathogen. In this study, we selected a large number of F. tularensis live vaccine strain (LVS) isolates that survived in progressively higher Ciprofloxacin concentrations, screened the isolates using a whole genome F. tularensis LVS tiling microarray and Illumina sequencing, and identified both known and novel mutations associated with resistance. Genes containing mutations encode DNA gyrase subunit A, a hypothetical protein, an asparagine synthase, a sugar transamine/perosamine synthetase and others. Structural modeling performed on these proteins provides insights into the potential function of these proteins and how they might contribute to Cipro resistance mechanisms. PMID:27668749

  6. Penrose tilings as model sets

    NASA Astrophysics Data System (ADS)

    Shutov, A. V.; Maleev, A. V.

    2015-11-01

    The Baake construction, based on generating a set of vertices of Penrose tilings as a model set, is refined. An algorithm and a corresponding computer program for constructing an uncountable set of locally indistinguishable Penrose tilings are developed proceeding from this refined construction. Based on an analysis of the parameters of tiling vertices, 62 versions of rhomb combinations at the tiling center are determined. The combinatorial structure of Penrose tiling worms is established. A concept of flip transformations of tilings is introduced that makes it possible to construct Penrose tilings that cannot be implemented in the Baake construction.

  7. Repairing Thermal Tiles

    NASA Technical Reports Server (NTRS)

    Mccain, C. R., Jr.; Feiler, C. W.

    1984-01-01

    Small chips and depression in surfaces of surface insulation tiles repaired using Ludox colloidal silica solution and silica powder. No waiting time necessary between mixing filler and using it. Patch cures quickly without heat being applied.

  8. "Densified" tiles form stronger bonds

    NASA Technical Reports Server (NTRS)

    Dotts, R. L.; Holt, J. W.

    1981-01-01

    Application of colloidal silica more than doubles bond strength of ceramic tile/substrate attachments. "Densification" process strengthens surface where tile attaches to felt strain-isolator pad, redistributing stresses and preventing failures at that point. First, isopropyl alcohol is applied to bottom tile surface. Second, aqueous mixture of cementing colloidal silica and reinforcing ball-milled silica particles is painted on tile. Finally, after drying, tile is rewaterproofed by exposure to vapors or methyltrimethoxysilane and acetic acid.

  9. Detection of chromosomal imbalances in children with idiopathic mental retardation by array based comparative genomic hybridisation (array-CGH)

    PubMed Central

    Schoumans, J; Ruivenkamp, C; Holmberg, E; Kyllerman, M; Anderlid, B; Nordenskjold, M

    2005-01-01

    Chromosomal aberrations are a common cause of multiple anomaly syndromes that include growth and developmental delay and dysmorphism. Novel high resolution, whole genome technologies, such as array based comparative genomic hybridisation (array-CGH), improve the detection rate of submicroscopic chromosomal abnormalities allowing re-investigation of cases where conventional cytogenetic techniques, Spectral karyotyping (SKY), and FISH failed to detect abnormalities. We performed a high resolution genome-wide screening for submicroscopic chromosomal rearrangements using array-CGH on 41 children with idiopathic mental retardation (MR) and dysmorphic features. The commercially available microarray from Spectral Genomics contained 2600 BAC clones spaced at approximately 1 Mb intervals across the genome. Standard chromosome analysis (>450 bands per haploid genome) revealed no chromosomal rearrangements. In addition, multi-subtelomeric FISH screening in 30 cases and SKY in 11 patients did not detect any abnormality. Using array-CGH we detected chromosomal imbalances in four patients (9.8%) ranging in size from 2 to 14 Mb. Large scale copy number variations were frequently observed. Array-CGH has become an important tool for the detection of chromosome aberrations and has the potential to identify genes involved in developmental delay and dysmorphism. Moreover, the detection of genomic imbalances of clinical significance will increase knowledge of the human genome by performing genotype-phenotype correlation. PMID:16141005

  10. Tiling Motion Patches.

    PubMed

    Hyun, Kyunglyul; Kim, Manmyung; Hwang, Youngseok; Lee, Jehee

    2013-05-01

    Simulating multiple character interaction is challenging because character actions must be carefully coordinated to align their spatial locations and synchronized with each other. We present an algorithm to create a dense crowd of virtual characters interacting with each other. The interaction may involve physical contacts, such as hand shaking, hugging, and carrying a heavy object collaboratively. We address the problem by collecting deformable motion patches, each of which describes an episode of multiple interacting characters, and tiling them spatially and temporally. The tiling of motion patches generates a seamless simulation of virtual characters interacting with each other in a non-trivial manner. Our tiling algorithm uses a combination of stochastic sampling and deterministic search to address the discrete and continuous aspects of the tiling problem. Our tiling algorithm made it possible to automatically generate highly-complex animation of multiple interacting characters. We achieved the level of complexity far beyond the current state-of-the-art animation techniques could generate, in terms of the diversity of human behaviors and the spatial/temporal density of interpersonal interactions. PMID:23669532

  11. Tiling motion patches.

    PubMed

    Hyun, Kyunglyul; Kim, Manmyung; Hwang, Youngseok; Lee, Jehee

    2013-11-01

    Simulating multiple character interaction is challenging because character actions must be carefully coordinated to align their spatial locations and synchronized with each other. We present an algorithm to create a dense crowd of virtual characters interacting with each other. The interaction may involve physical contacts, such as hand shaking, hugging, and carrying a heavy object collaboratively. We address the problem by collecting deformable motion patches, each of which describes an episode of multiple interacting characters, and tiling them spatially and temporally. The tiling of motion patches generates a seamless simulation of virtual characters interacting with each other in a nontrivial manner. Our tiling algorithm uses a combination of stochastic sampling and deterministic search to address the discrete and continuous aspects of the tiling problem. Our tiling algorithm made it possible to automatically generate highly complex animation of multiple interacting characters. We achieve the level of interaction complexity far beyond the current state of the art that animation techniques could generate, in terms of the diversity of human behaviors and the spatial/temporal density of interpersonal interactions. PMID:24029911

  12. Array Comparative Genomic Hybridizations: Assessing the ability to recapture evolutionary relationships using an in silico approach

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Comparative Genomic Hybridization (CGH) with DNA microarrays has many biological applications including surveys of copy number changes in tumorigenesis, species detection and identification, and functional genomics studies among related organisms. Array CGH has also been used to infer phylogenetic r...

  13. Hetero-oligonucleotide nanoscale tiles capable of two-dimensional lattice formation as testbeds for a rapid, affordable purification methodology.

    PubMed

    Lukeman, Philip S

    2013-06-21

    New nanoscale hetero-oligonucleotide tiles are assembled from DNA, RNA and morpholino oligos and purified using size exclusion filtration. Homo-oligonucleotide tiles assembled from RP-cartridge processed DNA oligos are purified by nondenaturing gel electrophoresis. These tiles' purity and homogeneity are demonstrated by gel electrophoresis and their incorporation into two-dimensional arrays visualized by AFM. This purification methodology increases throughput and decreases costs for researchers who wish to screen multiple tiles for utilization in structural or analytical studies.

  14. Seamless tiled display system

    NASA Technical Reports Server (NTRS)

    Dubin, Matthew B. (Inventor); Larson, Brent D. (Inventor); Kolosowsky, Aleksandra (Inventor)

    2006-01-01

    A modular and scalable seamless tiled display apparatus includes multiple display devices, a screen, and multiple lens assemblies. Each display device is subdivided into multiple sections, and each section is configured to display a sectional image. One of the lens assemblies is optically coupled to each of the sections of each of the display devices to project the sectional image displayed on that section onto the screen. The multiple lens assemblies are configured to merge the projected sectional images to form a single tiled image. The projected sectional images may be merged on the screen by magnifying and shifting the images in an appropriate manner. The magnification and shifting of these images eliminates any visual effect on the tiled display that may result from dead-band regions defined between each pair of adjacent sections on each display device, and due to gaps between multiple display devices.

  15. Bridging Gaps Between Refractory Tiles

    NASA Technical Reports Server (NTRS)

    Haney, J. W. J.

    1982-01-01

    Excessively large gaps between tiles on Space Shuttle eliminated without time-consuming and costly procedure of removing and replacing tiles. Ceramic tile silver is bonded in gap. Bonded silver prevents airframe under gap from getting too hot during reentry and presents aerodynamically smooth exterior surface.

  16. Geopolymers as potential repair material in tiles conservation

    NASA Astrophysics Data System (ADS)

    Geraldes, Catarina F. M.; Lima, Augusta M.; Delgado-Rodrigues, José; Mimoso, João Manuel; Pereira, Sílvia R. M.

    2016-03-01

    The restoration materials currently used to fill gaps in historical architectural tiles (e.g. lime or organic resin pastes) usually show serious drawbacks in terms of compatibility, effectiveness or durability. The existing solutions do not fully protect Portuguese faïence tiles ( azulejos) in outdoor conditions and frequently result in further deterioration. Geopolymers can be a potential solution for tile lacunae infill, given the chemical-mineralogical similitude to the ceramic body, and also the durability and versatile range of physical properties that can be obtained through the manipulation of their formulation and curing conditions. This work presents and discusses the viability of the use of geopolymeric pastes to fill lacunae in tiles or to act as "cold" cast ceramic tile surrogates reproducing missing tile fragments. The formulation of geopolymers, namely the type of activators, the alumino-silicate source, the quantity of water required for adequate workability and curing conditions, was studied. The need for post-curing desalination was also considered envisaging their application in the restoration of outdoor historical architectural tiles frequently exposed to adverse environmental conditions. The possible advantages and disadvantages of the use of geopolymers in the conservation of tiles are also discussed. The results obtained reveal that geopolymers pastes are a promising material for the restoration of tiles, when compared to other solutions currently in use.

  17. Latin-Square Tiling

    ERIC Educational Resources Information Center

    Gridgeman, N. T.

    1971-01-01

    The author presents a variation of a tiling problem where each row or column contains a complete set of elements, each diagonal is free of contiguous like elements, and at least one partition exists. These restrictions limit the number of solutions considerably, and methods of solution are subsequently discussed. (CT)

  18. The Shuttle tile story

    NASA Technical Reports Server (NTRS)

    Cooper, P. A.; Holloway, P. F.

    1981-01-01

    The structural problems associated with the reusable thermal protection system (TPS) of the Space Shuttle Orbiter are assessed. The ceramic insulation was placed on the aluminum in the form of about 30,000 tiles over approximately 70% of the Orbiter's exterior. The tiles were bonded to felt pads, and then the tile-pad structure was attached to the aluminum skin. As Orbiter design progressed, it was discovered that the TPS would have to withstand loads greater than initially predicted. The group tensile strength was less than that of the individual components. This was the primary factor contributing to the delay of the first flight. Values are given for Orbiter isotherms during a normal flight as well as the corresponding TPS distribution. The complete TPS assemblage is shown schematically, noting the sequence of assembling the tile components into a testing specimen. It is noted that tensile loads are applied to the strain-isolation path at discrete regions along transverse fiber bundles, causing a 50% reduction in system tensile strength. Procedures for strengthening the interface between the insulation and strain-isolation path are discussed and flight-simulation tests are outlined.

  19. METHOD FOR EVALUATING MOLD GROWTH ON CEILING TILE

    EPA Science Inventory

    A method to extract mold spores from porous ceiling tiles was developed using a masticator blender. Ceiling tiles were inoculated and analyzed using four species of mold. Statistical analysis comparing results obtained by masticator extraction and the swab method was performed. T...

  20. Molecular random tilings as glasses

    PubMed Central

    Garrahan, Juan P.; Stannard, Andrew; Blunt, Matthew O.; Beton, Peter H.

    2009-01-01

    We have recently shown that p-terphenyl-3,5,3′,5′-tetracarboxylic acid adsorbed on graphite self-assembles into a two-dimensional rhombus random tiling. This tiling is close to ideal, displaying long-range correlations punctuated by sparse localized tiling defects. In this article we explore the analogy between dynamic arrest in this type of random tilings and that of structural glasses. We show that the structural relaxation of these systems is via the propagation–reaction of tiling defects, giving rise to dynamic heterogeneity. We study the scaling properties of the dynamics and discuss connections with kinetically constrained models of glasses. PMID:19720990

  1. Tiling strategies for optical follow-up of gravitational-wave triggers by telescopes with a wide field of view

    NASA Astrophysics Data System (ADS)

    Ghosh, Shaon; Bloemen, Steven; Nelemans, Gijs; Groot, Paul J.; Price, Larry R.

    2016-08-01

    Aims: Binary neutron stars are among the most promising candidates for joint gravitational-wave and electromagnetic astronomy. The goal of this work is to investigate various observing strategies that telescopes with wide field of view might incorporate while searching for electromagnetic counterparts of gravitational-wave triggers. Methods: We examined various strategies of scanning the gravitational-wave sky localizations on the mock 2015-16 gravitational-wave events. First, we studied the performance of the sky coverage using a naive tiling system that completely covers a given confidence interval contour using a fixed grid. Then we propose the ranked-tiling strategy where we sample the localization in discrete two-dimensional intervals that are equivalent to the telescope's field of view and rank them based on their sample localizations. We then introduce an optimization of the grid by iterative sliding of the tiles. Next, we conducted tests for all the methods on a large sample of sky localizations that are expected in the first two years of operation of the Laser interferometer Gravitational-wave Observatory (LIGO) and Virgo detectors. We investigated the performance of the ranked-tiling strategy for telescope arrays and compared their performance against monolithic telescopes with a giant field of view. Finally, we studied the ability of optical counterpart detection by various types of telescopes. Results: Our analysis reveals that the ranked-tiling strategy improves the localization coverage over the contour-covering method. The improvement is more significant for telescopes with larger fields of view. We also find that while optimizing the position of the tiles significantly improves the coverage compared to contour-covering tiles. For ranked-tiles the same procedure leads to negligible improvement in the coverage of the sky localizations. We observed that distributing the field of view of the telescopes into arrays of multiple telescopes significantly

  2. Comparing a new laser strainmeter array with an adjacent, parallel running quartz tube strainmeter array.

    PubMed

    Kobe, Martin; Jahr, Thomas; Pöschel, Wolfgang; Kukowski, Nina

    2016-03-01

    In summer 2011, two new laser strainmeters about 26.6 m long were installed in N-S and E-W directions parallel to an existing quartz tube strainmeter system at the Geodynamic Observatory Moxa, Thuringia/Germany. This kind of installation is unique in the world and allows the direct comparison of measurements of horizontal length changes with different types of strainmeters for the first time. For the comparison of both data sets, we used the tidal analysis over three years, the strain signals resulting from drilling a shallow 100 m deep borehole on the ground of the observatory and long-period signals. The tidal strain amplitude factors of the laser strainmeters are found to be much closer to theoretical values (85%-105% N-S and 56%-92% E-W) than those of the quartz tube strainmeters. A first data analysis shows that the new laser strainmeters are more sensitive in the short-periodic range with an improved signal-to-noise ratio and distinctly more stable during long-term drifts of environmental parameters such as air pressure or groundwater level. We compared the signal amplitudes of both strainmeter systems at variable signal periods and found frequency-dependent amplitude differences. Confirmed by the tidal parameters, we have now a stable and high resolution laser strainmeter system that serves as calibration reference for quartz tube strainmeters. PMID:27036794

  3. Properties of structural clay load-bearing wall tile

    SciTech Connect

    Flanagan, R.D.; Butala, M.B.; Bennett, R.M.

    1993-02-02

    Structural clay tile has been produced in the United States and used in load-bearing walls for over a century. While the fundamentals of the manufacturing process have not changed significantly, specific fabrication details and material additives have led to increased strength and economy of current products. Red burned clay masonry units were sampled and tested in accordance with applicable ASTM standards. Objective of the tests was to compare tiles used in the original construction of the Oak Ridge Y-12 Plant (1940s) to tiles being used in current large scale laboratory tests and wall repairs. Results of the tests are compared to other contemporary and historic clay tile data. The effects of the evolution of clay tile manufacturing on engineering properties is also examined.

  4. Producing superhydrophobic roof tiles.

    PubMed

    Carrascosa, Luis A M; Facio, Dario S; Mosquera, Maria J

    2016-03-01

    Superhydrophobic materials can find promising applications in the field of building. However, their application has been very limited because the synthesis routes involve tedious processes, preventing large-scale application. A second drawback is related to their short-term life under outdoor conditions. A simple and low-cost synthesis route for producing superhydrophobic surfaces on building materials is developed and their effectiveness and their durability on clay roof tiles are evaluated. Specifically, an organic-inorganic hybrid gel containing silica nanoparticles is produced. The nanoparticles create a densely packed coating on the roof tile surface in which air is trapped. This roughness produces a Cassie-Baxter regime, promoting superhydrophobicity. A surfactant, n-octylamine, was also added to the starting sol to catalyze the sol-gel process and to coarsen the pore structure of the gel network, preventing cracking. The application of ultrasound obviates the need to use volatile organic compounds in the synthesis, thereby making a 'green' product. It was also demonstrated that a co-condensation process effective between the organic and inorganic species is crucial to obtain durable and effective coatings. After an aging test, high hydrophobicity was maintained and water absorption was completely prevented for the roof tile samples under study. However, a transition from a Cassie-Baxter to a Wenzel state regime was observed as a consequence of the increase in the distance between the roughness pitches produced by the aging of the coating.

  5. Producing superhydrophobic roof tiles

    NASA Astrophysics Data System (ADS)

    Carrascosa, Luis A. M.; Facio, Dario S.; Mosquera, Maria J.

    2016-03-01

    Superhydrophobic materials can find promising applications in the field of building. However, their application has been very limited because the synthesis routes involve tedious processes, preventing large-scale application. A second drawback is related to their short-term life under outdoor conditions. A simple and low-cost synthesis route for producing superhydrophobic surfaces on building materials is developed and their effectiveness and their durability on clay roof tiles are evaluated. Specifically, an organic-inorganic hybrid gel containing silica nanoparticles is produced. The nanoparticles create a densely packed coating on the roof tile surface in which air is trapped. This roughness produces a Cassie-Baxter regime, promoting superhydrophobicity. A surfactant, n-octylamine, was also added to the starting sol to catalyze the sol-gel process and to coarsen the pore structure of the gel network, preventing cracking. The application of ultrasound obviates the need to use volatile organic compounds in the synthesis, thereby making a ‘green’ product. It was also demonstrated that a co-condensation process effective between the organic and inorganic species is crucial to obtain durable and effective coatings. After an aging test, high hydrophobicity was maintained and water absorption was completely prevented for the roof tile samples under study. However, a transition from a Cassie-Baxter to a Wenzel state regime was observed as a consequence of the increase in the distance between the roughness pitches produced by the aging of the coating.

  6. Steep-Slope Assembly Testing of Clay and Concrete Tile With and Without Cool Pigmented Colors

    SciTech Connect

    Miller, William A

    2005-11-01

    Cool color pigments and sub-tile venting of clay and concrete tile roofs significantly impact the heat flow crossing the roof deck of a steep-slope roof. Field measures for the tile roofs revealed a 70% drop in the peak heat flow crossing the deck as compared to a direct-nailed asphalt shingle roof. The Tile Roofing Institute (TRI) and its affiliate members are keenly interested in documenting the magnitude of the drop for obtaining solar reflectance credits with state and federal "cool roof" building efficiency standards. Tile roofs are direct-nailed or are attached to a deck with batten or batten and counter-batten construction. S-Misson clay and concrete tile roofs, a medium-profile concrete tile roof, and a flat slate tile roof were installed on fully nstrumented attic test assemblies. Temperature measures of the roof, deck, attic, and ceiling, heat flows, solar reflectance, thermal emittance, and the ambient weather were recorded for each of the tile roofs and also on an adjacent attic cavity covered with a conventional pigmented and directnailed asphalt shingle roof. ORNL measured the tile's underside temperature and the bulk air temperature and heat flows just underneath the tile for batten and counter-batten tile systems and compared the results to the conventional asphalt shingle.

  7. Ceramic tile expansion engine housing

    DOEpatents

    Myers, B.

    1995-04-11

    An expandable ceramic tile housing for a high temperature engine is disclosed wherein each tile is independently supported in place in an interlocking matrix by retention mechanisms which mechanically couple the individual ceramic tiles to an outer metal support housing while maintaining thermal isolation of the metal housing from the ceramic tiles. The ceramic tiles are formed with either an octagonal front face portion and a square shank portion or a square front face portion with an octagonal shank portion. The length of the sides of the octagonal front face portion on one tile is equal to the length of the sides of the square front face portion of adjoining tiles to permit formation of an interlocking matrix. Fibrous ceramic sealing material may be placed between radial and tangential facing surfaces of adjacent tiles to limit radial gas flow there between. Labyrinth-sealed pressure-controlled compartments may be established between the tile housing and the outer metal support housing to control radial gas flow. 8 figures.

  8. Ceramic tile expansion engine housing

    DOEpatents

    Myers, Blake

    1995-01-01

    An expandable ceramic tile housing for a high temperature engine is disclosed wherein each tile is independently supported in place in an interlocking matrix by retention mechanisms which mechanically couple the individual ceramic tiles to an outer metal support housing while maintaining thermal isolation of the metal housing from the ceramic tiles. The ceramic tiles are formed with either an octagonal front face portion and a square shank portion or a square front face portion with an octagonal shank portion. The length of the sides of the octagonal front face portion on one tile is equal to the length of the sides of the square front face portion of adjoining tiles to permit formation of an interlocking matrix. Fibrous ceramic sealing material may be placed between radial and tangential facing surfaces of adjacent tiles to limit radial gas flow therebetween. Labyrinth-sealed pressure-controlled compartments may be established between the tile housing and the outer metal support housing to control radial gas flow.

  9. Direct readout of gaseous detectors with tiled CMOS circuits

    NASA Astrophysics Data System (ADS)

    Visschers, J. L.; Blanco Carballo, V.; Chefdeville, M.; Colas, P.; van der Graaf, H.; Schmitz, J.; Smits, S.; Timmermans, J.

    2007-03-01

    A coordinated design effort is underway, exploring the three-dimensional direct readout of gaseous detectors by an anode plate equipped with a tiled array of many CMOS pixel readout ASICs, having amplification grids integrated on their topsides and being contacted on their backside.

  10. Square Kilometre Array Station Configuration Using Two-Stage Beamforming

    NASA Astrophysics Data System (ADS)

    Jiwani, Aziz; Colegate, Tim; Razavi-Ghods, Nima; Hall, Peter J.; Padhi, Shantanu; bij de Vaate, Jan Geralt

    2013-03-01

    The lowest frequency band (70-450 MHz) of the Square Kilometre Array (SKA) will consist of sparse aperture arrays grouped into geographically localised patches or stations. Signals from thousands of antennas in each station will be beamformed to produce station beams which form the inputs for the central correlator. Two-stage beamforming within stations can reduce SKA-low signal processing load and costs, but has not been previously explored for the irregular station layouts now favoured in radio astronomy arrays. This paper illustrates the effects of two-stage beamforming on sidelobes and effective area, for two representative station layouts (regular and irregular gridded tiles on an irregular station). The performance is compared with a single-stage, irregular station. The inner sidelobe levels do not change significantly between layouts, but the more distant sidelobes are affected by the tile layouts; regular tile creates diffuse, but regular, grating lobes. With very sparse arrays, the station effective area is similar between layouts. At lower frequencies, the regular tile significantly reduces effective area, hence sensitivity. The effective area is highest for a two-stage irregular station, but it requires a larger station extent than the other two layouts. Although there are cost benefits for stations with two-stage beamforming, we conclude that more accurate station modelling and SKA-low configuration specifications are required before design finalisation.

  11. Covering the Plane with Rep-Tiles.

    ERIC Educational Resources Information Center

    Fosnaugh, Linda S.; Harrell, Marvin E.

    1996-01-01

    Presents an activity in which students use geometric figures, rep-tiles, to design a tile floor. Rep-tiles are geometric figures of which copies can fit together to form a larger similar figure. Includes reproducible student worksheet. (MKR)

  12. Radioactivity level in Chinese building ceramic tile.

    PubMed

    Xinwei, L

    2004-01-01

    The activity concentrations of (226)Ra, (232)Th and (40)K have been determined by gamma ray spectrometry. The concentrations of (226)Ra, (232)Th and (40)K range from 158.3 to 1087.6, 91.7 to 1218.4, and 473.8 to 1031.3 Bq kg(-1) for glaze, and from 63.5 to 131.4, 55.4 to 106.5, and 386.7 to 866.8 Bq kg(-1) for ceramic tile, respectively. The measured activity concentrations for these radionuclides were compared with the reported data of other countries and with the typical world values. The radium equivalent activities (Ra(eq)), external hazard index (H(ex)) and internal hazard index (H(in)) associated with the radionuclides were calculated. The Ra(eq) values of all ceramic tiles are lower than the limit of 370 Bq kg(-1). The values of H(ex) and H(in) calculated according to the Chinese criterion for ceramic tiles are less than unity. The Ra(eq) value for the glaze of glazed tile collected from some areas are >370 Bq kg(-1).

  13. Detecting Filler Spaces Under Tiles

    NASA Technical Reports Server (NTRS)

    Mende, Paul; Shinkevich, David; Scheuer, John

    1991-01-01

    Eddy-current probe nondestructively and indirectly indicates whether screed present under ceramic tile on aluminum substrate. Transducer coil excites eddy currents in aluminum substrate material. Response appears on oscilloscope or meter. Changes in response indicate spatially abrupt changes in substrate. Intended for use on insulating tiles on Space Shuttle, potential terrestrial applications in nondestructive testing.

  14. Application of Array Comparative Genomic Hybridization in Newborns with Multiple Congenital Anomalies.

    PubMed

    Szczałuba, Krzysztof; Nowakowska, Beata; Sobecka, Katarzyna; Smyk, Marta; Castaneda, Jennifer; Klapecki, Jakub; Kutkowska-Kaźmierczak, Anna; Śmigiel, Robert; Bocian, Ewa; Radkowski, Marek; Demkow, Urszula

    2016-01-01

    Major congenital anomalies are detectable in 2-3 % of the newborn population. Some of their genetic causes are attributable to copy number variations identified by array comparative genomic hybridization (aCGH). The value of aCGH screening as a first-tier test in children with multiple congenital anomalies has been studied and consensus adopted. However, array resolution has not been agreed upon, specifically in the newborn or infant population. Moreover, most array studies have been focused on mixed populations of intellectual disability/developmental delay with or without multiple congenital anomalies, making it difficult to assess the value of microarrays in newborns. The aim of the study was to determine the optimal quality and clinical sensitivity of high-resolution array comparative genomic hybridization in neonates with multiple congenital anomalies. We investigated a group of 54 newborns with multiple congenital anomalies defined as two or more birth defects from more than one organ system. Cytogenetic studies were performed using OGT CytoSure 8 × 60 K microarray. We found ten rearrangements in ten newborns. Of these, one recurrent syndromic microduplication was observed, whereas all other changes were unique. Six rearrangements were definitely pathogenic, including one submicroscopic and five that could be seen on routine karyotype analysis. Four other copy number variants were likely pathogenic. The candidate genes that may explain the phenotype were discussed. In conclusion, high-resolution array comparative hybridization can be applied successfully in newborns with multiple congenital anomalies as the method detects a significant number of pathogenic changes, resulting in early diagnoses. We hypothesize that small changes previously considered benign or even inherited rearrangements should be classified as potentially pathogenic at least until a subsequent clinical assessment would exclude a developmental delay or dysmorphism. PMID:26987320

  15. Spectral response data for development of cool coloured tile coverings

    NASA Astrophysics Data System (ADS)

    Libbra, Antonio; Tarozzi, Luca; Muscio, Alberto; Corticelli, Mauro A.

    2011-03-01

    Most ancient or traditional buildings in Italy show steep-slope roofs covered by red clay tiles. As the rooms immediately below the roof are often inhabited in historical or densely urbanized centres, the combination of low solar reflectance of tile coverings and low thermal inertia of either wooden roof structures or sub-tile insulation panels makes summer overheating a major problem. The problem can be mitigated by using tiles coated with cool colours, that is colours with the same spectral response of clay tiles in the visible, but highly reflecting in the near infrared range, which includes more than half of solar radiation. Cool colours can yield the same visible aspect of common building surfaces, but higher solar reflectance. Studies aimed at developing cool colour tile coverings for traditional Italian buildings have been started. A few coating solutions with the typical red terracotta colour have been produced and tested in the laboratory, using easily available materials. The spectral response and the solar reflectance have been measured and compared with that of standard tiles.

  16. Tile Patterns with LOGO--Part II: Tile Patterns from Rep Tiles Using LOGO.

    ERIC Educational Resources Information Center

    Clason, Robert G.

    1991-01-01

    Described is a recursive LOGO method for dissecting polygons into congruent parts (rep tiles) similar to the original polygon, thereby producing unexpected patterns. A list of descriptions for such dissections is included along with suggestions for modifications that allow extended student explorations into tile patterns. (JJK)

  17. Clinical utility of an array comparative genomic hybridization analysis for Williams syndrome.

    PubMed

    Yagihashi, Tatsuhiko; Torii, Chiharu; Takahashi, Reiko; Omori, Mikimasa; Kosaki, Rika; Yoshihashi, Hiroshi; Ihara, Masahiro; Minagawa-Kawai, Yasuyo; Yamamoto, Junichi; Takahashi, Takao; Kosaki, Kenjiro

    2014-11-01

    To reveal the relation between intellectual disability and the deleted intervals in Williams syndrome, we performed an array comparative genomic hybridization analysis and standardized developmental testing for 11 patients diagnosed as having Williams syndrome based on fluorescent in situ hybridization testing. One patient had a large 4.2-Mb deletion spanning distally beyond the common 1.5-Mb intervals observed in 10/11 patients. We formulated a linear equation describing the developmental age of the 10 patients with the common deletion; the developmental age of the patient with the 4.2-Mb deletion was significantly below the expectation (developmental age = 0.51 × chronological age). The large deletion may account for the severe intellectual disability; therefore, the use of array comparative genomic hybridization may provide practical information regarding individuals with Williams syndrome.

  18. Oligonucleotide arrays vs. metaphase-comparative genomic hybridisation and BAC arrays for single-cell analysis: first applications to preimplantation genetic diagnosis for Robertsonian translocation carriers.

    PubMed

    Ramos, Laia; del Rey, Javier; Daina, Gemma; García-Aragonés, Manel; Armengol, Lluís; Fernandez-Encinas, Alba; Parriego, Mònica; Boada, Montserrat; Martinez-Passarell, Olga; Martorell, Maria Rosa; Casagran, Oriol; Benet, Jordi; Navarro, Joaquima

    2014-01-01

    Comprehensive chromosome analysis techniques such as metaphase-Comparative Genomic Hybridisation (CGH) and array-CGH are available for single-cell analysis. However, while metaphase-CGH and BAC array-CGH have been widely used for Preimplantation Genetic Diagnosis, oligonucleotide array-CGH has not been used in an extensive way. A comparison between oligonucleotide array-CGH and metaphase-CGH has been performed analysing 15 single fibroblasts from aneuploid cell-lines and 18 single blastomeres from human cleavage-stage embryos. Afterwards, oligonucleotide array-CGH and BAC array-CGH were also compared analysing 16 single blastomeres from human cleavage-stage embryos. All three comprehensive analysis techniques provided broadly similar cytogenetic profiles; however, non-identical profiles appeared when extensive aneuploidies were present in a cell. Both array techniques provided an optimised analysis procedure and a higher resolution than metaphase-CGH. Moreover, oligonucleotide array-CGH was able to define extra segmental imbalances in 14.7% of the blastomeres and it better determined the specific unbalanced chromosome regions due to a higher resolution of the technique (≈ 20 kb). Applicability of oligonucleotide array-CGH for Preimplantation Genetic Diagnosis has been demonstrated in two cases of Robertsonian translocation carriers 45,XY,der(13;14)(q10;q10). Transfer of euploid embryos was performed in both cases and pregnancy was achieved by one of the couples. This is the first time that an oligonucleotide array-CGH approach has been successfully applied to Preimplantation Genetic Diagnosis for balanced chromosome rearrangement carriers. PMID:25415307

  19. Oligonucleotide Arrays vs. Metaphase-Comparative Genomic Hybridisation and BAC Arrays for Single-Cell Analysis: First Applications to Preimplantation Genetic Diagnosis for Robertsonian Translocation Carriers

    PubMed Central

    Ramos, Laia; del Rey, Javier; Daina, Gemma; García-Aragonés, Manel; Armengol, Lluís; Fernandez-Encinas, Alba; Parriego, Mònica; Boada, Montserrat; Martinez-Passarell, Olga; Martorell, Maria Rosa; Casagran, Oriol; Benet, Jordi; Navarro, Joaquima

    2014-01-01

    Comprehensive chromosome analysis techniques such as metaphase-Comparative Genomic Hybridisation (CGH) and array-CGH are available for single-cell analysis. However, while metaphase-CGH and BAC array-CGH have been widely used for Preimplantation Genetic Diagnosis, oligonucleotide array-CGH has not been used in an extensive way. A comparison between oligonucleotide array-CGH and metaphase-CGH has been performed analysing 15 single fibroblasts from aneuploid cell-lines and 18 single blastomeres from human cleavage-stage embryos. Afterwards, oligonucleotide array-CGH and BAC array-CGH were also compared analysing 16 single blastomeres from human cleavage-stage embryos. All three comprehensive analysis techniques provided broadly similar cytogenetic profiles; however, non-identical profiles appeared when extensive aneuploidies were present in a cell. Both array techniques provided an optimised analysis procedure and a higher resolution than metaphase-CGH. Moreover, oligonucleotide array-CGH was able to define extra segmental imbalances in 14.7% of the blastomeres and it better determined the specific unbalanced chromosome regions due to a higher resolution of the technique (≈20 kb). Applicability of oligonucleotide array-CGH for Preimplantation Genetic Diagnosis has been demonstrated in two cases of Robertsonian translocation carriers 45,XY,der(13;14)(q10;q10). Transfer of euploid embryos was performed in both cases and pregnancy was achieved by one of the couples. This is the first time that an oligonucleotide array-CGH approach has been successfully applied to Preimplantation Genetic Diagnosis for balanced chromosome rearrangement carriers. PMID:25415307

  20. Oligonucleotide arrays vs. metaphase-comparative genomic hybridisation and BAC arrays for single-cell analysis: first applications to preimplantation genetic diagnosis for Robertsonian translocation carriers.

    PubMed

    Ramos, Laia; del Rey, Javier; Daina, Gemma; García-Aragonés, Manel; Armengol, Lluís; Fernandez-Encinas, Alba; Parriego, Mònica; Boada, Montserrat; Martinez-Passarell, Olga; Martorell, Maria Rosa; Casagran, Oriol; Benet, Jordi; Navarro, Joaquima

    2014-01-01

    Comprehensive chromosome analysis techniques such as metaphase-Comparative Genomic Hybridisation (CGH) and array-CGH are available for single-cell analysis. However, while metaphase-CGH and BAC array-CGH have been widely used for Preimplantation Genetic Diagnosis, oligonucleotide array-CGH has not been used in an extensive way. A comparison between oligonucleotide array-CGH and metaphase-CGH has been performed analysing 15 single fibroblasts from aneuploid cell-lines and 18 single blastomeres from human cleavage-stage embryos. Afterwards, oligonucleotide array-CGH and BAC array-CGH were also compared analysing 16 single blastomeres from human cleavage-stage embryos. All three comprehensive analysis techniques provided broadly similar cytogenetic profiles; however, non-identical profiles appeared when extensive aneuploidies were present in a cell. Both array techniques provided an optimised analysis procedure and a higher resolution than metaphase-CGH. Moreover, oligonucleotide array-CGH was able to define extra segmental imbalances in 14.7% of the blastomeres and it better determined the specific unbalanced chromosome regions due to a higher resolution of the technique (≈ 20 kb). Applicability of oligonucleotide array-CGH for Preimplantation Genetic Diagnosis has been demonstrated in two cases of Robertsonian translocation carriers 45,XY,der(13;14)(q10;q10). Transfer of euploid embryos was performed in both cases and pregnancy was achieved by one of the couples. This is the first time that an oligonucleotide array-CGH approach has been successfully applied to Preimplantation Genetic Diagnosis for balanced chromosome rearrangement carriers.

  1. Foam on Tile Impact Modeling for the STS-107 Investigation

    NASA Technical Reports Server (NTRS)

    Stellingwerf, R. F.; Robinson, J. H.; Richardson, S.; Evans, S. W.; Stallworth, R.; Hovater, M.

    2004-01-01

    Following the breakup of the Space Shuttle Columbia during reentry a NASA/Contractor investigation team was formed to examine the probable damage inflicted on Orbiter Thermal Protection System elements by impact of External Tank insulating foam projectiles. The authors formed a working subgroup within the larger team to apply the Smooth Particle Hydrodynamics code SPHC to the damage estimation problem. Numerical models of the Orbiter's tiles and of the Tank's foam were constructed and used as inputs into the code. Material properties needed to properly model the tiles and foam were obtained from other working subgroups who performed tests on these items for this purpose. Two- and three-dimensional models of the tiles were constructed, including the glass outer layer, the main body of LI-900 insulation, the densified lower layer of LI-900, the Nomex felt mounting layer, and the Aluminum 2024 vehicle skin. A model for the BX-250 foam including porous compression, elastic rebound, and surface erosion was developed. Code results for the tile damage and foam behavior were extensively validated through comparison with Southwest Research Institute foam-on-tile impact experiments carried out in 1999. These tests involved small projectiles striking individual tiles and small tile arrays. Following code and model validation we simulated impacts of larger foam projectiles on the examples of tile systems used on the Orbiter. Results for impacts on the main landing gear door are presented in this paper, including effects of impacts at several angles, and of rapidly rotating projectiles. General results suggest that foam impacts on tiles at about 500 mph could cause appreciable damage if the impact angle is greater than about 20 degrees. Some variations of the foam properties, such as increased brittleness or increased density could increase damage in some cases. Rotation up to 17 rps failed to increase the damage for the two cases considered. This does not rule out other cases

  2. Removable fastener for insulating tiles

    NASA Technical Reports Server (NTRS)

    Brown, J. N.; Cade, D. H.; Logston, H. A.

    1979-01-01

    Fastening device that consists of internally threaded silica insert, silica plug, and molded rubber retainer, seals holes in ceramic tiles securely over wide temperature excursions without cracking from thermal stresses. Device proves useful in high-temperature industrial applications.

  3. Lozenge Tilings and Hurwitz Numbers

    NASA Astrophysics Data System (ADS)

    Novak, Jonathan

    2015-10-01

    We give a new proof of the fact that, near a turning point of the frozen boundary, the vertical tiles in a uniformly random lozenge tiling of a large sawtooth domain are distributed like the eigenvalues of a GUE random matrix. Our argument uses none of the standard tools of integrable probability. In their place, it uses a combinatorial interpretation of the Harish-Chandra/Itzykson-Zuber integral as a generating function for desymmetrized Hurwitz numbers.

  4. Theoretical and experimental comparative analysis of beamforming methods for loudspeaker arrays under given performance constraints

    NASA Astrophysics Data System (ADS)

    Olivieri, Ferdinando; Fazi, Filippo Maria; Nelson, Philip A.; Shin, Mincheol; Fontana, Simone; Yue, Lang

    2016-07-01

    Methods for beamforming are available that provide the signals used to drive an array of sources for the implementation of systems for the so-called personal audio. In this work, performance of the delay-and-sum (DAS) method and of three widely used methods for optimal beamforming are compared by means of computer simulations and experiments in an anechoic environment using a linear array of sources with given constraints on quality of the reproduced field at the listener's position and limit to input energy to the array. Using the DAS method as a benchmark for performance, the frequency domain responses of the loudspeaker filters can be characterized in three regions. In the first region, at low frequencies, input signals designed with the optimal methods are identical and provide higher directivity performance than that of the DAS. In the second region, performance of the optimal methods are similar to the DAS method. The third region starts above the limit due to spatial aliasing. A method is presented to estimate the boundaries of these regions.

  5. Comparing Coordinated Garbage Collection Algorithms for Arrays of Solid-state Drives

    SciTech Connect

    Lee, Junghee; Kim, Youngjae; Oral, H Sarp; Shipman, Galen M; Dillow, David A; Wang, Feiyi

    2012-01-01

    Solid-State Drives (SSDs) offer significant performance improvements over hard disk drives (HDD) on a number of workloads. The frequency of garbage collection (GC) activity is directly correlated with the pattern, frequency, and volume of write requests, and scheduling of GC is controlled by logic internal to the SSD. SSDs can exhibit significant performance degradations when garbage collection (GC) conflicts with an ongoing I/O request stream. When using SSDs in a RAID array, the lack of coordination of the local GC processes amplifies these performance degradations. No RAID controller or SSD available today has the technology to overcome this limitation. In our previous work, we presented a Global Garbage Collection (GGC) mechanism to improve response times and reduce performance variability for a RAID array of SSDs. A coordination method is employed so that GCs in the array can run at the same time. The coordination can exhibit substantial performance improvement. In this paper, we explore various GC coordination algorithms. We develop reactive and proactive GC coordination algorithms and evaluate their I/O performance and block erase counts for various workloads. We show that a proactive GC coordination algorithm can improve the I/O response times by up to 9% further and increase the lifetime of SSDs by reducing the number of block erase counts by up to 79% compared to a reactive algorithm.

  6. Array comparative genomic hybridization analysis of small supernumerary marker chromosomes in human infertility.

    PubMed

    Guediche, N; Tosca, L; Kara Terki, A; Bas, C; Lecerf, L; Young, J; Briand-Suleau, A; Tou, B; Bouligand, J; Brisset, S; Misrahi, M; Guiochon-Mantel, A; Goossens, M; Tachdjian, G

    2012-01-01

    Small supernumerary marker chromosomes (sSMC) are structurally abnormal chromosomes that cannot be unambiguously identified by conventional banding cytogenetics. This study describes four patients with sSMC in relation with infertility. Patient 1 had primary infertility. His brother, fertile, carried the same sSMC (patient 2). Patient 3 presented polycystic ovary syndrome and patient 4 primary ovarian insufficiency. Cytogenetic studies, array comparative genomic hybridization (CGH) and sperm analyses were compared with cases previously reported. sSMC corresponded to the 15q11.2 region (patients 1 and 2), the centromeric chromosome 15 region (patient 3) and the 21p11.2 region (patient 4). Array CGH showed 3.6-Mb gain for patients 1 and 2 and 0.266-Mb gain for patient 4. Sperm fluorescent in-situ hybridization analyses found ratios of 0.37 and 0.30 of sperm nuclei with sSMC(15) for patients 1 and 2, respectively (P < 0.001). An increase of sperm nuclei with disomy X, Y and 18 was noted for patient 1 compared with control and patient 2 (P < 0.001). Among the genes mapped in the unbalanced chromosomal regions, POTE B and BAGE are related to the testis and ovary, respectively. The implication of sSMC in infertility could be due to duplication, but also to mechanical effects perturbing meiosis.

  7. Genomic profiling of invasive melanoma cell lines by array comparative genomic hybridization.

    PubMed

    Koroknai, Viktória; Ecsedi, Szilvia; Vízkeleti, Laura; Kiss, Tímea; Szász, István; Lukács, Andrea; Papp, Orsolya; Ádány, Róza; Balázs, Margit

    2016-04-01

    Malignant melanoma is one of the most aggressive human cancers. Invasion of cells is the first step in metastasis, resulting in cell migration through tissue compartments. We aimed to evaluate genomic alterations specifically associated with the invasive characteristics of melanoma cells. Matrigel invasion assays were used to determine the invasive properties of cell lines that originated from primary melanomas. Array comparative genomic hybridization analyses were carried out to define the chromosome copy number alterations (CNAs). Several recurrent CNAs were identified by array comparative genomic hybridization that affected melanoma-related genes. Invasive primary cell lines showed high frequencies of CNAs, including the loss of 7q and gain of 12q chromosomal regions targeting PTPN12, ADAM22, FZD1, TFPI2, GNG11, COL1A2, SMURF1, VGF, RELN and GLIPR1 genes. Gain of the GDNF (5p13.1), GPAA1, PLEC and SHARPIN (8q24.3) genes was significantly more frequent in invasive cell lines compared with the noninvasive ones. Importantly, copy number gains of these genes were also found in cell lines that originated from metastases, suggesting their role in melanoma metastasis formation. The present study describes genomic differences between invasive and noninvasive melanoma cell lines that may contribute toward the aggressive phenotype of human melanoma cells. PMID:26656572

  8. Hetero-oligonucleotide nanoscale tiles capable of two-dimensional lattice formation as testbeds for a rapid, affordable purification methodology.

    PubMed

    Lukeman, Philip S

    2013-06-21

    New nanoscale hetero-oligonucleotide tiles are assembled from DNA, RNA and morpholino oligos and purified using size exclusion filtration. Homo-oligonucleotide tiles assembled from RP-cartridge processed DNA oligos are purified by nondenaturing gel electrophoresis. These tiles' purity and homogeneity are demonstrated by gel electrophoresis and their incorporation into two-dimensional arrays visualized by AFM. This purification methodology increases throughput and decreases costs for researchers who wish to screen multiple tiles for utilization in structural or analytical studies. PMID:23676891

  9. Identification of novel candidate genes associated with cleft lip and palate using array comparative genomic hybridization

    PubMed Central

    Osoegawa, Kazutoyo; Vessere, Gery M.; Utami, Kagistia Hana; Mansilla, Maria Adela; Johnson, Marla K.; Riley, Bridget M.; L’Heureux, Jamie; Pfundt, Rolph; Staaf, Johan; van der Vliet, Walter A.; Lidral, Andrew C.; Schoenmakers, Eric F. P. M.; Borg, Ake; Schutte, Brian C.; Lammer, Edward J.; Murray, Jeffrey C.; de Jong, Pieter J.

    2013-01-01

    Introduction and methods We analyzed DNA samples isolated from individuals born with cleft lip and cleft palate to identify deletions and duplications of candidate gene loci using array comparative genomic hybridization (array-CGH). Results Of 83 syndromic cases analyzed we identified one subject with a previously unknown 2.7 Mb deletion at 22q11.21 coinciding with the DiGeorge syndrome region. Eighteen of the syndromic cases had clinical features of Van der Woude syndrome and deletions were identified in 5 of these, all of which encompassed the interferon regulatory factor 6 (IRF6) gene. In a series of 104 nonsyndromic cases we found one subject with a 3.2 Mb deletion at chromosome 6q25.1-25.2 and another with a 2.2 Mb deletion at 10q26.11-26.13. Analyses of parental DNA demonstrated that the two deletion cases at 22q11.21 and 6q25.1-25.2 were de novo, while the deletion of 10q26.11-26.13 was inherited from the mother, who also has cleft lip. These deletions appear likely to be causally associated with the phenotypes of the subjects. Estrogen receptor 1 (ESR1) and fibroblast growth factor receptor 2 (FGFR2) genes from the 6q25.1-25.2 and 10q26.11-26.13, respectively, were identified as likely causative genes using a gene prioritization software. Discussion We have shown that array-CGH analysis of DNA samples derived from cleft lip and palate subjects is an efficient and productive method for identifying candidate chromosomal loci and genes, complementing traditional genetic mapping strategies. PMID:17873121

  10. Gene expression profiles in squamous cell cervical carcinoma using array-based comparative genomic hybridization analysis.

    PubMed

    Choi, Y-W; Bae, S M; Kim, Y-W; Lee, H N; Kim, Y W; Park, T C; Ro, D Y; Shin, J C; Shin, S J; Seo, J-S; Ahn, W S

    2007-01-01

    Our aim was to identify novel genomic regions of interest and provide highly dynamic range information on correlation between squamous cell cervical carcinoma and its related gene expression patterns by a genome-wide array-based comparative genomic hybridization (array-CGH). We analyzed 15 cases of cervical cancer from KangNam St Mary's Hospital of the Catholic University of Korea. Microdissection assay was performed to obtain DNA samples from paraffin-embedded cervical tissues of cancer as well as of the adjacent normal tissues. The bacterial artificial chromosome (BAC) array used in this study consisted of 1440 human BACs and the space among the clones was 2.08 Mb. All the 15 cases of cervical cancer showed the differential changes of the cervical cancer-associated genetic alterations. The analysis limit of average gains and losses was 53%. A significant positive correlation was found in 8q24.3, 1p36.32, 3q27.1, 7p21.1, 11q13.1, and 3p14.2 changes through the cervical carcinogenesis. The regions of high level of gain were 1p36.33-1p36.32, 8q24.3, 16p13.3, 1p36.33, 3q27.1, and 7p21.1. And the regions of homozygous loss were 2q12.1, 22q11.21, 3p14.2, 6q24.3, 7p15.2, and 11q25. In the high level of gain regions, GSDMDC1, RECQL4, TP73, ABCF3, ALG3, HDAC9, ESRRA, and RPS6KA4 were significantly correlated with cervical cancer. The genes encoded by frequently lost clones were PTPRG, GRM7, ZDHHC3, EXOSC7, LRP1B, and NR3C2. Therefore, array-CGH analyses showed that specific genomic alterations were maintained in cervical cancer that were critical to the malignant phenotype and may give a chance to find out possible target genes present in the gained or lost clones.

  11. Microdeletion and Microduplication Analysis of Chinese Conotruncal Defects Patients with Targeted Array Comparative Genomic Hybridization

    PubMed Central

    Ma, Xiaojing; Wu, Dandan; Zhang, Ting; He, Li; Qin, Shengying; Li, Xiaotian

    2013-01-01

    Objective The current study aimed to develop a reliable targeted array comparative genomic hybridization (aCGH) to detect microdeletions and microduplications in congenital conotruncal defects (CTDs), especially on 22q11.2 region, and for some other chromosomal aberrations, such as 5p15-5p, 7q11.23 and 4p16.3. Methods Twenty-seven patients with CTDs, including 12 pulmonary atresia (PA), 10 double-outlet right ventricle (DORV), 3 transposition of great arteries (TGA), 1 tetralogy of Fallot (TOF) and one ventricular septal defect (VSD), were enrolled in this study and screened for pathogenic copy number variations (CNVs), using Agilent 8 x 15K targeted aCGH. Real-time quantitative polymerase chain reaction (qPCR) was performed to test the molecular results of targeted aCGH. Results Four of 27 patients (14.8%) had 22q11.2 CNVs, 1 microdeletion and 3 microduplications. qPCR test confirmed the microdeletion and microduplication detected by the targeted aCGH. Conclusion Chromosomal abnormalities were a well-known cause of multiple congenital anomalies (MCA). This aCGH using arrays with high-density coverage in the targeted regions can detect genomic imbalances including 22q11.2 and other 10 kinds CNVs effectively and quickly. This approach has the potential to be applied to detect aneuploidy and common microdeletion/microduplication syndromes on a single microarray. PMID:24098474

  12. Genomic analysis by oligonucleotide array Comparative Genomic Hybridization utilizing formalin-fixed, paraffin-embedded tissues.

    PubMed

    Savage, Stephanie J; Hostetter, Galen

    2011-01-01

    Formalin fixation has been used to preserve tissues for more than a hundred years, and there are currently more than 300 million archival samples in the United States alone. The application of genomic protocols such as high-density oligonucleotide array Comparative Genomic Hybridization (aCGH) to formalin-fixed, paraffin-embedded (FFPE) tissues, therefore, opens an untapped resource of available tissues for research and facilitates utilization of existing clinical data in a research sample set. However, formalin fixation results in cross-linking of proteins and DNA, typically leading to such a significant degradation of DNA template that little is available for use in molecular applications. Here, we describe a protocol to circumvent formalin fixation artifact by utilizing enzymatic reactions to obtain quality DNA from a wide range of FFPE tissues for successful genome-wide discovery of gene dosage alterations in archival clinical samples.

  13. Statistical magnetometry on isolated NiCo nanowires and nanowire arrays: a comparative study

    NASA Astrophysics Data System (ADS)

    Sergelius, Philip; Garcia Fernandez, Javier; Martens, Stefan; Zocher, Michael; Böhnert, Tim; Vega Martinez, Victor; de la Prida, Victor Manuel; Görlitz, Detlef; Nielsch, Kornelius

    2016-04-01

    The first-order reversal curve (FORC) method can be used to extract information about the interaction and switching field distribution of ferromagnetic nanowire arrays, yet it remains challenging to acquire reliable values. Within ordered pores of anodic alumina templates we electrochemically synthesize eight different Ni x Co1-x samples with x varying between 0.05 and 1. FORC diagrams are acquired using vibrating sample magnetometry. By dissolving the template and using the magneto-optical Kerr effect, we measure the hysteresis loops of up to 100 different and isolated nanowires for each sample to gain precise information about the intrinsic switching field distribution. Values of the interaction field are extracted from a deshearing of the major hysteresis loop. We present a comparative study between all methods in order to evaluate and reinforce current FORC theory with experimental findings.

  14. Whole Genome Amplification of Labeled Viable Single Cells Suited for Array-Comparative Genomic Hybridization.

    PubMed

    Kroneis, Thomas; El-Heliebi, Amin

    2015-01-01

    Understanding details of a complex biological system makes it necessary to dismantle it down to its components. Immunostaining techniques allow identification of several distinct cell types thereby giving an inside view of intercellular heterogeneity. Often staining reveals that the most remarkable cells are the rarest. To further characterize the target cells on a molecular level, single cell techniques are necessary. Here, we describe the immunostaining, micromanipulation, and whole genome amplification of single cells for the purpose of genomic characterization. First, we exemplify the preparation of cell suspensions from cultured cells as well as the isolation of peripheral mononucleated cells from blood. The target cell population is then subjected to immunostaining. After cytocentrifugation target cells are isolated by micromanipulation and forwarded to whole genome amplification. For whole genome amplification, we use GenomePlex(®) technology allowing downstream genomic analysis such as array-comparative genomic hybridization.

  15. Composite treatment of ceramic tile armor

    DOEpatents

    Hansen, James G. R.; Frame, Barbara J.

    2012-01-02

    An improved ceramic tile armor has a core of boron nitride and a polymer matrix composite (PMC) facing of carbon fibers fused directly to the impact face of the tile. A polyethylene fiber composite backing and spall cover are preferred. The carbon fiber layers are cured directly onto the tile, not adhered using a separate adhesive so that they are integral with the tile, not a separate layer.

  16. Composite treatment of ceramic tile armor

    DOEpatents

    Hansen, James G. R. [Oak Ridge, TN; Frame, Barbara J [Oak Ridge, TN

    2010-12-14

    An improved ceramic tile armor has a core of boron nitride and a polymer matrix composite (PMC) facing of carbon fibers fused directly to the impact face of the tile. A polyethylene fiber composite backing and spall cover are preferred. The carbon fiber layers are cured directly onto the tile, not adhered using a separate adhesive so that they are integral with the tile, not a separate layer.

  17. Heating deep seated eccentrically located tumors with an annular phased array system: a comparative clinical study using two annular array operating configurations.

    PubMed

    Samulski, T V; Kapp, D S; Fessenden, P; Lohrbach, A

    1987-01-01

    Regional heating administered with an annular array to 12 patients with deep-seated advanced malignant disease eccentrically located in the lower abdomen and pelvis is compared based on the annular array operating configuration. One configuration (4 quadrants active) delivers radiofrequency power with relative uniformity throughout the patient cross-section. The other (2 quadrants active) allows the radiofrequency power deposition to be shifted preferentially into the eccentrically located treatment volume. Phantom measurements have been made to demonstrate the redistribution of radiofrequency power that results when the annular array is operated in these respective configurations. Systemic responses (i.e. oral temperature rise, changes in blood pressure, and heart rate) to these regional hyperthermia applications are compared and are not significantly different with respect to these heating configurations. Temperature data obtained during treatment sessions using these two annular array operating configurations are analyzed based on the fraction of measured tumor and normal tissue temperatures exceeding or equal to a given index temperature. Although the two quadrant configuration is more efficient in delivering power to the treatment volume, this analysis does not indicate a significant gain in therapeutic heating as a result of this preferential power deposition. Treatment tolerance and heterogeneity with respect to tissue type and blood flow remained the dominant limiting factors with regard to temperatures achieved.

  18. Thermodynamics and Kinetics of DNA Tile-Based Self-Assembly

    NASA Astrophysics Data System (ADS)

    Jiang, Shuoxing

    Deoxyribonucleic acid (DNA) has emerged as an attractive building material for creating complex architectures at the nanometer scale that simultaneously affords versatility and modularity. Particularly, the programmability of DNA enables the assembly of basic building units into increasingly complex, arbitrary shapes or patterns. With the expanding complexity and functionality of DNA toolboxes, a quantitative understanding of DNA self-assembly in terms of thermodynamics and kinetics, will provide researchers with more subtle design guidelines that facilitate more precise spatial and temporal control. This dissertation focuses on studying the physicochemical properties of DNA tile-based self-assembly process by recapitulating representative scenarios and intermediate states with unique assembly pathways. First, DNA double-helical tiles with increasing flexibility were designed to investigate the dimerization kinetics. The higher dimerization rates of more rigid tiles result from the opposing effects of higher activation energies and higher pre-exponential factors from the Arrhenius equation, where the pre-exponential factor dominates. Next, the thermodynamics and kinetics of single tile attachment to preformed "multitile" arrays were investigated to test the fundamental assumptions of tile assembly models. The results offer experimental evidences that double crossover tile attachment is determined by the electrostatic environment and the steric hindrance at the binding site. Finally, the assembly of double crossover tiles within a rhombic DNA origami frame was employed as the model system to investigate the competition between unseeded, facet and seeded nucleation. The results revealed that preference of nucleation types can be tuned by controlling the rate-limiting nucleation step. The works presented in this dissertation will be helpful for refining the DNA tile assembly model for future designs and simulations. Moreover, The works presented here could also be

  19. Production Process for Strong, Light Ceramic Tiles

    NASA Technical Reports Server (NTRS)

    Holmquist, G. R.; Cordia, E. R.; Tomer, R. S.

    1985-01-01

    Proportions of ingredients and sintering time/temperature schedule changed. Production process for lightweight, high-strength ceramic insulating tiles for Space Shuttle more than just scaled-up version of laboratory process for making small tiles. Boron in aluminum borosilicate fibers allows fusion at points where fibers contact each other during sintering, thereby greatly strengthening tiles structure.

  20. Array-Based Comparative Genomic Hybridization for the Genomewide Detection of Submicroscopic Chromosomal Abnormalities

    PubMed Central

    Vissers, Lisenka E. L. M. ; de Vries, Bert B. A. ; Osoegawa, Kazutoyo ; Janssen, Irene M. ; Feuth, Ton ; Choy, Chik On ; Straatman, Huub ; van der Vliet, Walter ; Huys, Erik H. L. P. G. ; van Rijk, Anke ; Smeets, Dominique ; van Ravenswaaij-Arts, Conny M. A. ; Knoers, Nine V. ; van der Burgt, Ineke ; de Jong, Pieter J. ; Brunner, Han G. ; van Kessel, Ad Geurts ; Schoenmakers, Eric F. P. M. ; Veltman, Joris A. 

    2003-01-01

    Microdeletions and microduplications, not visible by routine chromosome analysis, are a major cause of human malformation and mental retardation. Novel high-resolution, whole-genome technologies can improve the diagnostic detection rate of these small chromosomal abnormalities. Array-based comparative genomic hybridization allows such a high-resolution screening by hybridizing differentially labeled test and reference DNAs to arrays consisting of thousands of genomic clones. In this study, we tested the diagnostic capacity of this technology using ∼3,500 flourescent in situ hybridization–verified clones selected to cover the genome with an average of 1 clone per megabase (Mb). The sensitivity and specificity of the technology were tested in normal-versus-normal control experiments and through the screening of patients with known microdeletion syndromes. Subsequently, a series of 20 cytogenetically normal patients with mental retardation and dysmorphisms suggestive of a chromosomal abnormality were analyzed. In this series, three microdeletions and two microduplications were identified and validated. Two of these genomic changes were identified also in one of the parents, indicating that these are large-scale genomic polymorphisms. Deletions and duplications as small as 1 Mb could be reliably detected by our approach. The percentage of false-positive results was reduced to a minimum by use of a dye-swap-replicate analysis, all but eliminating the need for laborious validation experiments and facilitating implementation in a routine diagnostic setting. This high-resolution assay will facilitate the identification of novel genes involved in human mental retardation and/or malformation syndromes and will provide insight into the flexibility and plasticity of the human genome. PMID:14628292

  1. Validation of multiplex ligation-dependent probe amplification for confirmation of array comparative genomic hybridization.

    PubMed

    Jennings, Lawrence J; Yu, Min; Fitzpatrick, Carrie; Smith, Frederick A

    2011-09-01

    The American College of Medical Genetics recommends that each laboratory should confirm abnormal or ambiguous results detected by array comparative genomic hybridization (aCGH). At present, the gold standard method for aCGH confirmation is fluorescent in situ hybridization (FISH). However, FISH is not well suited for small tandem duplications or very small deletions that are detectable by oligonucleotide arrays. Therefore, we developed and validated multiplex ligation-dependent probe amplification (MLPA) for aCGH confirmation. The method performance validation showed linearity through the expected analytical measurement range (0.05 to 2 genome equivalents). The interassay normalized coefficient of variation averaged 3.7% across 12 control and target probes. This low imprecision allowed detection of 20% mosaicism with exceptional confidence (P<0.006). Comparison with a combined gold standard of phenotype, aCGH, karyotype, and/ or FISH showed 100% concordance for 218 samples using an X/Y chromosome-specific probe set (95% confidence interval, 98.3%-100.0%). Patient-specific probe sets also showed 100% concordance to the gold standard for 18 genomic targets. In conclusion, we have developed and validated an MLPA assay using a novel approach to accommodate the fact that positive controls would not be available at the time of testing. We initially validated the MLPA method using X/Y chromosome-specific probes and well-characterized samples and then validated new probe sets by comparision with reference populations. We have successfully incorporated aCGH confirmation using custom-designed MLPA into our normal workflow, and used it for confirmation of all abnormal or ambiguous results. PMID:21817904

  2. Molecular karyotyping of human single sperm by array- comparative genomic hybridization.

    PubMed

    Patassini, Cristina; Garolla, Andrea; Bottacin, Alberto; Menegazzo, Massimo; Speltra, Elena; Foresta, Carlo; Ferlin, Alberto

    2013-01-01

    No valid method is currently available to analyze the entire genome of sperm, including aneuploidies and structural chromosomal alterations. Here we describe the optimization and application of array-Comparative Genomic Hybridization (aCGH) on single human sperm. The aCGH procedure involves screening of the entire chromosome complement by DNA microarray allowing having a molecular karyotype, and it is currently used in research and in diagnostic clinical practice (prenatal diagnosis, pre-implantation genetic diagnosis), but it has never been applied on sperm. DNA from single human sperm isolated by micromanipulator was extracted, decondensed and amplified by whole-genome amplification (WGA) and then labeled, hybridized to BAC array, and scanned by microarray scanner. Application of this protocol to 129 single sperm from normozoospermic donors identified 7.8% of sperm with different genetic anomalies, including aneuploidies and gains and losses in different chromosomes (unbalanced sperm). On the contrary, of 130 single sperm from men affected by Hodgkin lymphoma at the end of three months of chemotherapy cycles 23.8% were unbalanced. Validation of the method also included analysis of 43 sperm from a man with a balanced translocation [46,XY,t(2;12)(p11.2;q24.31)], which showed gains and losses corresponding to the regions involved in the translocation in 18.6% of sperm and alterations in other chromosomes in 16.3% of sperm. Future application of this method might give important information on the biology and pathophysiology of spermatogenesis and sperm chromosome aberrations in normal subjects and in patients at higher risk of producing unbalanced sperm, such as infertile men, carriers of karyotype anomalies, men with advanced age, subjects treated with chemotherapy, and partners of couples with repeated miscarriage and repeated failure during assisted reproduction techniques. PMID:23565289

  3. Hetero-oligonucleotide nanoscale tiles capable of two-dimensional lattice formation as testbeds for a rapid, affordable purification methodology

    NASA Astrophysics Data System (ADS)

    Lukeman, Philip S.

    2013-05-01

    New nanoscale hetero-oligonucleotide tiles are assembled from DNA, RNA and morpholino oligos and purified using size exclusion filtration. Homo-oligonucleotide tiles assembled from RP-cartridge processed DNA oligos are purified by nondenaturing gel electrophoresis. These tiles' purity and homogeneity are demonstrated by gel electrophoresis and their incorporation into two-dimensional arrays visualized by AFM. This purification methodology increases throughput and decreases costs for researchers who wish to screen multiple tiles for utilization in structural or analytical studies.New nanoscale hetero-oligonucleotide tiles are assembled from DNA, RNA and morpholino oligos and purified using size exclusion filtration. Homo-oligonucleotide tiles assembled from RP-cartridge processed DNA oligos are purified by nondenaturing gel electrophoresis. These tiles' purity and homogeneity are demonstrated by gel electrophoresis and their incorporation into two-dimensional arrays visualized by AFM. This purification methodology increases throughput and decreases costs for researchers who wish to screen multiple tiles for utilization in structural or analytical studies. Electronic supplementary information (ESI) available: Experimental procedures, gel electrophoresis and AFM data. See DOI: 10.1039/c3nr01551c

  4. Comparative gene array analysis of progenitor cells from human paired deep neck and subcutaneous adipose tissue.

    PubMed

    Tews, D; Schwar, V; Scheithauer, M; Weber, T; Fromme, T; Klingenspor, M; Barth, T F; Möller, P; Holzmann, K; Debatin, K M; Fischer-Posovszky, P; Wabitsch, M

    2014-09-01

    Brown and white adipocytes have been shown to derive from different progenitors. In this study we sought to clarify the molecular differences between human brown and white adipocyte progenitors cells. To this end, we performed comparative gene array analysis on progenitor cells isolated from paired biopsies of deep and subcutaneous neck adipose tissue from individuals (n = 6) undergoing neck surgery. Compared with subcutaneous neck progenitors, cells from the deep neck adipose tissue displayed marked differences in gene expression pattern, including 355 differentially regulated (>1.5 fold) genes. Analysis of highest regulated genes revealed that STMN2, MME, ODZ2, NRN1 and IL13RA2 genes were specifically expressed in white progenitor cells, whereas expression of LRRC17, CNTNAP3, CD34, RGS7BP and ADH1B marked brown progenitor cells. In conclusion, progenitors from deep neck and subcutaneous neck adipose tissue are characterized by a distinct molecular signature, giving rise to either brown or white adipocytes. The newly identified markers may provide potential pharmacological targets facilitating brown adipogenesis. PMID:25102227

  5. [Attention deficit hyperactivity disorder analyzed with array comparative genome hybridization method. Case report].

    PubMed

    Duga, Balázs; Czakó, Márta; Komlósi, Katalin; Hadzsiev, Kinga; Sümegi, Katalin; Kisfali, Péter; Melegh, Márton; Melegh, Béla

    2014-10-01

    One of the most common psychiatric disorders during childhood is attention deficit hyperactivity disorder, which affects 5-6% of children worldwide. Symptoms include attention deficit, hyperactivity, forgetfulness and weak impulse control. The exact mechanism behind the development of the disease is unknown. However, current data suggest that a strong genetic background is responsible, which explains the frequent occurrence within a family. Literature data show that copy number variations are very common in patients with attention deficit hyperactivity disorder. The authors present a patient with attention deficit hyperactivity disorder who proved to have two approximately 400 kb heterozygous microduplications at 6p25.2 and 15q13.3 chromosomal regions detected by comparative genomic hybridization methods. Both duplications affect genes (6p25.2: SLC22A23; 15q13.3: CHRNA7) which may play a role in the development of attention deficit hyperactivity disorder. This case serves as an example of the wide spectrum of indication of the array comparative genome hybridization method.

  6. CGH arrays compared for DNA isolated from formalin-fixed, paraffin-embedded material.

    PubMed

    Krijgsman, Oscar; Israeli, Danielle; Haan, Josien C; van Essen, Hendrik F; Smeets, Serge J; Eijk, Paul P; Steenbergen, Renske D M; Kok, Klaas; Tejpar, Sabine; Meijer, Gerrit A; Ylstra, Bauke

    2012-04-01

    Formalin-fixed, paraffin-embedded (FFPE) archival tissue is an important source of DNA material. The most commonly used technique to identify copy number aberrations from chromosomal DNA in tumorigenesis is array comparative genomic hybridization (aCGH). Although copy number analysis using DNA from FFPE archival tissue is challenging, several research groups have reported high quality and reproducible DNA copy number results using aCGH. Aim of this study is to compare the commercially available aCGH platforms suitable for high-resolution copy number analysis using FFPE-derived DNA. Two dual channel aCGH platforms (Agilent and NimbleGen) and a single channel SNP-based platform (Affymetrix) were evaluated using seven FFPE colon cancer samples, and median absolute deviation (MAD), deflection, signal-to-noise ratio, and DNA input requirements were used as quality criteria. Large differences were observed between platforms; Agilent and NimbleGen showed better MAD values (0.13 for both) compared with Affymetrix (0.22). On the contrary, Affymetrix showed a better deflection of 0.94, followed by 0.71 for Agilent and 0.51 for NimbleGen. This resulted in signal-to-nose ratios that were comparable between the three commercially available platforms. Interestingly, DNA input amounts from FFPE material lower than recommended still yielded high quality profiles on all platforms. Copy number analysis using DNA derived from FFPE archival material is feasible using all three high-resolution copy number platforms and shows reproducible results, also with DNA input amounts lower than recommended.

  7. Foam on Tile Impact Modeling for the Space Shuttle Program

    NASA Technical Reports Server (NTRS)

    Stellingwerf, R. F.; Robinson, J. H.; Richardson, S.; Evans, S. W.; Stallworth, R.; Hovater, M.

    2003-01-01

    Following the breakup of the Space Shuttle Columbia during reentry a NASA-wide investigation team was formed to examine the probable damage inflicted on Orbiter Thermal Protection System (TPS) elements by impact of External Tank insulating foam projectiles. Our team was to apply rigorous, physics-based analysis techniques to help determine parameters of interest for an experimental test program, utilize validated codes to investigate the full range of impact scenarios, and use analysis derived models to predict aero-thermal-structural responses to entry conditions. We were to operate on a non-interference basis with the j Team, and were to supply significant findings to that team and to the Orbiter Vehicle Engineering Working Group, being responsive to any solicitations for support from these entities. The authors formed a working sub-group within the larger team to apply the Smooth Particle Hydrodynamics code SPHC to the damage estimation problem. Numerical models of the LI-900 TPS tiles and of the BX-250 foam were constructed and used as inputs into the code. Material properties needed to properly model the tiles and foam were obtained from other working sub-groups who performed tests on these items for this purpose. Two- and three- dimensional models of the tiles were constructed, including the glass outer layer, the densified lower layer of LI-900 insulation, the Nomex felt Strain Isolation Pad (SIP) mounting layer, and the underlying aluminum 2024 vehicle skin. A model for the BX-250 foam including porous compression, elastic rebound, and surface erosion was developed. Code results for the tile damage and foam behavior were extensively validated through comparison with the Southwest Research Institute (SwRI) foam-on-tile impact experiments carried out in 1999. These tests involved small projectiles striking individual tiles and small tile arrays. Following code and model validation we simulated impacts of larger ET foam projectiles on the TPS tile systems used

  8. Homozygous losses detected by array comparative genomic hybridization in multiplex urothelial carcinomas of the bladder.

    PubMed

    Beothe, Tamas; Zubakov, Dmitry; Kovacs, Gyula

    2015-09-01

    Urothelial carcinomas (UCs) may present at first as a solitary or multifocal neoplasm. We applied high resolution array comparative genomic hybridization to 24 solitary and 32 multiplex UCs and used the hidden Markov model algorithm to identify the copy number changes at the probe level. Copy number losses and homozygous deletions at the chromosome 9p region affecting the CDKN2A and MTAP genes were the most frequent alterations in both groups of tumors. We have delineated two new tumor suppressor gene regions at chromosome 9p that harbor the PTPRD and BNC2 genes. Copy number losses at chromosomal regions 2q, 8p, and 18p occurred preferentially in solitary UCs, whereas multiplex UCs displayed loss of large chromosomal regions at 9q, 10q, 11q, 18q, and 21q. Homozygous deletions harboring loci of cell adhesion genes such as claudins, desmocollins, and desmogleins were seen exclusively in multiplex UCs. Amplifications occurred only in invasive G3 UCs irrespective of staging. Our study suggests that solitary and multiplex UCs may have divergent genetic pathways. The biallelic inactivation of cellular adhesion genes by homozygous deletions in multiplex UCs may explain the frequent intravesical spreading of tumor cells. .

  9. Insertional translocation detected using FISH confirmation of array-comparative genomic hybridization (aCGH) results.

    PubMed

    Kang, Sung-Hae L; Shaw, Chad; Ou, Zhishuo; Eng, Patricia A; Cooper, M Lance; Pursley, Amber N; Sahoo, Trilochan; Bacino, Carlos A; Chinault, A Craig; Stankiewicz, Pawel; Patel, Ankita; Lupski, James R; Cheung, Sau Wai

    2010-05-01

    Insertional translocations (ITs) are rare events that require at least three breaks in the chromosomes involved and thus qualify as complex chromosomal rearrangements (CCR). In the current study, we identified 40 ITs from approximately 18,000 clinical cases (1:500) using array-comparative genomic hybridization (aCGH) in conjunction with fluorescence in situ hybridization (FISH) confirmation of the aCGH findings, and parental follow-up studies. Both submicroscopic and microscopically visible IT events were detected. They were divided into three major categories: (1) simple intrachromosomal and interchromosomal IT resulting in pure segmental trisomy, (2) complex IT involving more than one abnormality, (3) deletion inherited from a parent with a balanced IT resulting in pure segmental monosomy. Of the cases in which follow-up parental studies were available, over half showed inheritance from an apparently unaffected parent carrying the same unbalanced rearrangement detected in the propositi, thus decreasing the likelihood that these IT events are clinically relevant. Nevertheless, we identified six cases in which small submicroscopic events were detected involving known disease-associated genes/genomic segments and are likely to be pathogenic. We recommend that copy number gains detected by clinical aCGH analysis should be confirmed using FISH analysis whenever possible in order to determine the physical location of the duplicated segment. We hypothesize that the increased use of aCGH in the clinic will demonstrate that IT occurs more frequently than previously considered but can identify genomic rearrangements with unclear clinical significance.

  10. Insertional Translocation Detected Using FISH Confirmation of Array-Comparative Genomic Hybridization (aCGH) Results

    PubMed Central

    Kang, Sung-Hae L.; Shaw, Chad; Ou, Zhishuo; Eng, Patricia A.; Cooper, M. Lance; Pursley, Amber N.; Sahoo, Trilochan; Bacino, Carlos A.; Chinault, A. Craig; Stankiewicz, Pawel; Patel, Ankita; Lupski, James R.; Cheung, Sau Wai

    2013-01-01

    Insertional translocations (ITs) are rare events that require at least three breaks in the chromosomes involved and thus qualify as complex chromosomal rearrangements (CCR). In the current study, we identified 40 ITs from approximately 18,000 clinical cases (1:500) using array-comparative genomic hybridization (aCGH) in conjunction with fluorescence in situ hybridization (FISH) confirmation of the aCGH findings, and parental follow-up studies. Both submicroscopic and microscopically visible IT events were detected. They were divided into three major categories: (1) simple intrachromosomal and interchromosomal IT resulting in pure segmental trisomy, (2) complex IT involving more than one abnormality, (3) deletion inherited from a parent with a balanced IT resulting in pure segmental monosomy. Of the cases in which follow-up parental studies were available, over half showed inheritance from an apparently unaffected parent carrying the same unbalanced rearrangement detected in the propositi, thus decreasing the likelihood that these IT events are clinically relevant. Nevertheless, we identified six cases in which small submicroscopic events were detected involving known disease-associated genes/genomic segments and are likely to be pathogenic. We recommend that copy number gains detected by clinical aCGH analysis should be confirmed using FISH analysis whenever possible in order to determine the physical location of the duplicated segment. We hypothesize that the increased use of aCGH in the clinic will demonstrate that IT occurs more frequently than previously considered but can identify genomic rearrangements with unclear clinical significance. PMID:20340098

  11. New tools for embryo selection: comprehensive chromosome screening by array comparative genomic hybridization.

    PubMed

    Rodrigo, Lorena; Mateu, Emilia; Mercader, Amparo; Cobo, Ana Cristina; Peinado, Vanessa; Milán, Miguel; Al-Asmar, Nasser; Campos-Galindo, Inmaculada; García-Herrero, Sandra; Mir, Pere; Simón, Carlos; Rubio, Carmen

    2014-01-01

    The objective of this study was to evaluate the usefulness of comprehensive chromosome screening (CCS) using array comparative genomic hybridization (aCGH). The study included 1420 CCS cycles for recurrent miscarriage (n = 203); repetitive implantation failure (n = 188); severe male factor (n = 116); previous trisomic pregnancy (n = 33); and advanced maternal age (n = 880). CCS was performed in cycles with fresh oocytes and embryos (n = 774); mixed cycles with fresh and vitrified oocytes (n = 320); mixed cycles with fresh and vitrified day-2 embryos (n = 235); and mixed cycles with fresh and vitrified day-3 embryos (n = 91). Day-3 embryo biopsy was performed and analyzed by aCGH followed by day-5 embryo transfer. Consistent implantation (range: 40.5-54.2%) and pregnancy rates per transfer (range: 46.0-62.9%) were obtained for all the indications and independently of the origin of the oocytes or embryos. However, a lower delivery rate per cycle was achieved in women aged over 40 years (18.1%) due to the higher percentage of aneuploid embryos (85.3%) and lower number of cycles with at least one euploid embryo available per transfer (40.3%). We concluded that aneuploidy is one of the major factors which affect embryo implantation.

  12. New Tools for Embryo Selection: Comprehensive Chromosome Screening by Array Comparative Genomic Hybridization

    PubMed Central

    Cobo, Ana Cristina; Milán, Miguel; Al-Asmar, Nasser; García-Herrero, Sandra; Mir, Pere; Simón, Carlos

    2014-01-01

    The objective of this study was to evaluate the usefulness of comprehensive chromosome screening (CCS) using array comparative genomic hybridization (aCGH). The study included 1420 CCS cycles for recurrent miscarriage (n = 203); repetitive implantation failure (n = 188); severe male factor (n = 116); previous trisomic pregnancy (n = 33); and advanced maternal age (n = 880). CCS was performed in cycles with fresh oocytes and embryos (n = 774); mixed cycles with fresh and vitrified oocytes (n = 320); mixed cycles with fresh and vitrified day-2 embryos (n = 235); and mixed cycles with fresh and vitrified day-3 embryos (n = 91). Day-3 embryo biopsy was performed and analyzed by aCGH followed by day-5 embryo transfer. Consistent implantation (range: 40.5–54.2%) and pregnancy rates per transfer (range: 46.0–62.9%) were obtained for all the indications and independently of the origin of the oocytes or embryos. However, a lower delivery rate per cycle was achieved in women aged over 40 years (18.1%) due to the higher percentage of aneuploid embryos (85.3%) and lower number of cycles with at least one euploid embryo available per transfer (40.3%). We concluded that aneuploidy is one of the major factors which affect embryo implantation. PMID:24877108

  13. Characterization of copy number variation in genomic regions containing STR loci using array comparative genomic hybridization.

    PubMed

    Repnikova, Elena A; Rosenfeld, Jill A; Bailes, Andrea; Weber, Cecilia; Erdman, Linda; McKinney, Aimee; Ramsey, Sarah; Hashimoto, Sayaka; Lamb Thrush, Devon; Astbury, Caroline; Reshmi, Shalini C; Shaffer, Lisa G; Gastier-Foster, Julie M; Pyatt, Robert E

    2013-09-01

    Short tandem repeat (STR) loci are commonly used in forensic casework, familial analysis for human identification, and for monitoring hematopoietic cell engraftment after bone marrow transplant. Unexpected genetic variation leading to sequence and length differences in STR loci can complicate STR typing, and presents challenges in casework interpretation. Copy number variation (CNV) is a relatively recently identified form of genetic variation consisting of genomic regions present at variable copy numbers within an individual compared to a reference genome. Large scale population studies have demonstrated that likely all individuals carry multiple regions with CNV of 1kb in size or greater in their genome. To date, no study correlating genomic regions containing STR loci with CNV has been conducted. In this study, we analyzed results from 32,850 samples sent for clinical array comparative genomic hybridization (CGH) analysis for the presence of CNV at regions containing the 13 CODIS (Combined DNA Index System) STR, and the Amelogenin X (AMELX) and Amelogenin Y (AMELY) loci. Thirty-two individuals with CNV involving STR loci on chromosomes 2, 4, 7, 11, 12, 13, 16, and 21, and twelve with CNV involving the AMELX/AMELY loci were identified. These results were correlated with data from publicly available databases housing information on CNV identified in normal populations and additional clinical cases. These collective results demonstrate the presence of CNV in regions containing 9 of the 13 CODIS STR and AMELX/Y loci. Further characterization of STR profiles within regions of CNV, additional cataloging of these variants in multiple populations, and contributing such examples to the public domain will provide valuable information for reliable use of these loci.

  14. Developing tiled projection display systems

    SciTech Connect

    Hereld, M.; Judson, I. R.; Paris, J.; Stevens, R. L.

    2000-06-08

    Tiled displays are an emerging technology for constructing high-resolution semi-immersive visualization environments capable of presenting high-resolution images from scientific simulation [EVL, PowerWall]. In this way, they complement other technologies such as the CAVE [Cruz-Niera92] or ImmersaDesk, [Czernuszenko97], which by design give up pure resolution in favor of width of view and stereo. However, the largest impact may well be in using large-format tiled displays as one of possibly multiple displays in building ''information'' or ''active'' spaces that surround the user with diverse ways of interacting with data and multimedia information flows [IPSI, Childers00, Raskar98, ROME, Stanford, UNC]. These environments may prove to be the ultimate successor of the desktop metaphor for information technology work.

  15. Comparative research on the optical properties of three surface patterning ZnO ordered arrays

    NASA Astrophysics Data System (ADS)

    Hou, Kai; Zhu, Ya-Bin; Qiao, Lu

    2015-12-01

    We fabricate three surface patterning zinc oxide (ZnO) ordered arrays on glass substrates by using nanosphere lithography technique and dc magnetron sputtering technique. The crescent, tube and honeycomb surface morphologies of the samples are observed by scanning electron microscopy. The transmittance, fluorescence and confocal Raman spectra of the sample are measured. Obviously, when the angle between the plume and the substrate is 90°, the honeycomb arrays have a better transmission. Additionally, the PL intensity of honeycomb arrays is superior. With the increasing of the angle between the substrate and the sputtering plume, the fluorescence peak shows blue shift. The Raman peak located at 438 cm- 1 belongs to ZnO E2 (high) mode, which corresponds to the characteristic band of the hexagonal wurtzite phase. The tube arrays have the best Raman spectrum intensity.

  16. Comparative cytogenetic characterization of primary canine melanocytic lesions using array CGH and fluorescence in situ hybridization.

    PubMed

    Poorman, Kelsey; Borst, Luke; Moroff, Scott; Roy, Siddharth; Labelle, Philippe; Motsinger-Reif, Alison; Breen, Matthew

    2015-06-01

    Melanocytic lesions originating from the oral mucosa or cutaneous epithelium are common in the general dog population, with up to 100,000 diagnoses each year in the USA. Oral melanoma is the most frequent canine neoplasm of the oral cavity, exhibiting a highly aggressive course. Cutaneous melanocytomas occur frequently, but rarely develop into a malignant form. Despite the differential prognosis, it has been assumed that subtypes of melanocytic lesions represent the same disease. To address the relative paucity of information about their genomic status, molecular cytogenetic analysis was performed on the three recognized subtypes of canine melanocytic lesions. Using array comparative genomic hybridization (aCGH) analysis, highly aberrant distinct copy number status across the tumor genome for both of the malignant melanoma subtypes was revealed. The most frequent aberrations included gain of dog chromosome (CFA) 13 and 17 and loss of CFA 22. Melanocytomas possessed fewer genome wide aberrations, yet showed a recurrent gain of CFA 20q15.3-17. A distinctive copy number profile, evident only in oral melanomas, displayed a sigmoidal pattern of copy number loss followed immediately by a gain, around CFA 30q14. Moreover, when assessed by fluorescence in situ hybridization (FISH), copy number aberrations of targeted genes, such as gain of c-MYC (80 % of cases) and loss of CDKN2A (68 % of cases), were observed. This study suggests that in concordance with what is known for human melanomas, canine melanomas of the oral mucosa and cutaneous epithelium are discrete and initiated by different molecular pathways. PMID:25511566

  17. Using stable isotope tracers to assess flow pathways for P transport in tile-drained landscapes

    NASA Astrophysics Data System (ADS)

    Williams, M. R.; King, K.; Ford, W. I., III; Buda, A. R.; Kennedy, C. D.

    2015-12-01

    Throughout the Midwestern US and other poorly drained agricultural regions, phosphorus (P) transport in tile drainage is of increasing environmental concern. Significant P loads are often measured in subsurface drainage water despite the normally high P adsorption capacity of subsoils, which suggest that the high P loadings observed in tile drainage water during storm events are the result of P bypassing the soil matrix via macropore flow. The objectives of this study were to quantify event water delivery to tile drains via macropore flow paths during storm events and to determine the effect of tillage practices on event water and P delivery to tiles. Tile discharge, total dissolved P (DP) and total P (TP) concentrations, and stable oxygen and deuterium isotopic signatures were measured from two adjacent tile-drained fields in Ohio, USA during seven spring storms. Fertilizer was surface-applied to both fields and disk tillage was used to incorporate the fertilizer on one field while the other remained in no-till. Results showed that event water accounted for between 26 and 69% of total tile discharge from both fields, with tillage substantially reducing the maximum contributions of event water. Following fertilizer application, median DP concentration was significantly greater in the no-tilled fields (1.19 mg/L) compared to the tilled field (0.66 mg/L). Concentrations remained significantly greater in the no-tilled field compared to the tilled field for the five monitored storms (>1 month) after fertilizer application. Both DP and TP concentrations in the no-tilled fields were significantly related to event water contributions to tile discharge, while only TP concentration was significantly related to event water in the tilled field. Collectively, results suggest that macropore flow is an important flow pathway in tile-drained landscapes and that incorporating surface-applied fertilizers has the potential to substantially reduce the risk of P loss from tile

  18. Comparative efficiency analysis of fiber-array and conventional beam director systems in volume turbulence.

    PubMed

    Vorontsov, Mikhail; Filimonov, Grigory; Ovchinnikov, Vladimir; Polnau, Ernst; Lachinova, Svetlana; Weyrauch, Thomas; Mangano, Joseph

    2016-05-20

    The performance of two prominent laser beam projection system types is analyzed through wave-optics numerical simulations for various atmospheric turbulence conditions, propagation distances, and adaptive optics (AO) mitigation techniques. Comparisons are made between different configurations of both a conventional beam director (BD) using a monolithic-optics-based Cassegrain telescope and a fiber-array BD that uses an array of densely packed fiber collimators. The BD systems considered have equal input power and aperture diameters. The projected laser beam power inside the Airy size disk at the target plane is used as the performance metric. For the fiber-array system, both incoherent and coherent beam combining regimes are considered. We also present preliminary results of side-by-side atmospheric beam projection experiments over a 7-km propagation path using both the AO-enhanced beam projection system with a Cassegrain telescope and the coherent fiber-array BD composed of 21 densely packed fiber collimators. Both wave-optics numerical simulation and experimental results demonstrate that, for similar system architectures and turbulence conditions, coherent fiber-array systems are more efficient in mitigation of atmospheric turbulence effects and generation of a hit spot of the smallest possible size on a remotely located target. PMID:27411147

  19. Comparative efficiency analysis of fiber-array and conventional beam director systems in volume turbulence.

    PubMed

    Vorontsov, Mikhail; Filimonov, Grigory; Ovchinnikov, Vladimir; Polnau, Ernst; Lachinova, Svetlana; Weyrauch, Thomas; Mangano, Joseph

    2016-05-20

    The performance of two prominent laser beam projection system types is analyzed through wave-optics numerical simulations for various atmospheric turbulence conditions, propagation distances, and adaptive optics (AO) mitigation techniques. Comparisons are made between different configurations of both a conventional beam director (BD) using a monolithic-optics-based Cassegrain telescope and a fiber-array BD that uses an array of densely packed fiber collimators. The BD systems considered have equal input power and aperture diameters. The projected laser beam power inside the Airy size disk at the target plane is used as the performance metric. For the fiber-array system, both incoherent and coherent beam combining regimes are considered. We also present preliminary results of side-by-side atmospheric beam projection experiments over a 7-km propagation path using both the AO-enhanced beam projection system with a Cassegrain telescope and the coherent fiber-array BD composed of 21 densely packed fiber collimators. Both wave-optics numerical simulation and experimental results demonstrate that, for similar system architectures and turbulence conditions, coherent fiber-array systems are more efficient in mitigation of atmospheric turbulence effects and generation of a hit spot of the smallest possible size on a remotely located target.

  20. Water Detection and Removal From Shuttle Tiles

    NASA Astrophysics Data System (ADS)

    Youngquist, Robert C.

    2003-01-01

    Current methods for detecting and removing water from the Space Shuttle tiles have proved inadequate in cases of excessive water exposure. This paper describes two new tools that are currently being introduced to Shuttle processing to supplement the existing methods. A capacitive device has been developed to augment the IR camera method of detecting water in the tiles and a vacuum pump system is being tested as a likely replacement to the heat lamps currently used to dry wet tiles.

  1. Fast Glazing of Alumina/Silica Tiles

    NASA Technical Reports Server (NTRS)

    Creedon, J. F.; Gzowski, E. R.; Wheeler, W. H.

    1986-01-01

    Technique for applying ceramic coating to fibrous silica/alumina insulation tiles prevents cracks and substantially reduces firing time. To reduce thermal stresses in tile being coated, high-temperature, shorttime firing schedule implemented. Such schedule allows coating to mature while substrate remains at relatively low temperature, reducing stress differential between coating and substrate. Technique used to repair tiles with damaged coatings and possibly used in heat-treating objects made of materials having different thermal-expansion coefficients.

  2. Comparative Study on Synthesizing Reconfigurable Time- Modulated Linear Arrays using Differential Evolution, Artificial Bee Colony and Particle Swarm Optimization

    NASA Astrophysics Data System (ADS)

    Mandal, S. K.; Singh, Harshavardhan; Mahanti, G. K.; Ghatak, Rowdra

    2014-10-01

    This paper presents a new technique based on optimization tools to design phase only, digitally controlled, reconfigurable antenna arrays through time modulation. In the proposed approach, the on-time durations of the time-modulated elements and the static amplitudes of the array elements are perturbed in such a way that the same on-time sequence and discrete values of static amplitudes for four bit digital attenuators produces either a pencil or a flat-top beam pattern, depending on the suitable discrete phase distributions of five bit digital phase shifters. In order to illustrate the technique, three optimization tools: differential evolution (DE), artificial bee colony (ABC), and particle swarm optimization (PSO) are employed and their performances are compared. The numerical results for a 20-element linear array are presented.

  3. Chromosomal Aberrations in ETV6/RUNX1-positive Childhood Acute Lymphoblastic Leukemia using 244K Oligonucleotide Array Comparative Genomic Hybridization

    PubMed Central

    2012-01-01

    Background Acute lymphoblastic leukemia (ALL) is a heterogeneous form of hematological cancer consisting of various subtypes. We are interested to study the genetic aberration in precursor B-cell ALL with specific t(12;21) translocation in childhood ALL patients. A high resolution 244K array-based Comparative Genomic Hybridization (array-CGH) was used to study eleven ETV6/RUNX1-positive childhood acute lymphoblastic leukemia (ALL) patients. Result 155 chromosomal aberrations (119 losses, 36 gains) were reported in the array findings, corresponding to 76.8% deletions and 23.2% amplifications. The ETV6 gene deletion occurred in 4 of the patients, corresponding to 45% of the sample. The most common alterations above 1 Mb were deletion 6q (13%), 12p (12%) and 9p (8%), and duplication 4q (6%) and Xq (4%). Other genes important in ALL were also identified in this study including RUNX1, CDKN2A, FHIT, and PAX5. The array-CGH technique was able to detect microdeletion as small as 400 bp. Conclusion The results demonstrate the usefulness of high resolution array-CGH as a complementary tool in the investigation of ALL. PMID:23151340

  4. Global Swath and Gridded Data Tiling

    NASA Technical Reports Server (NTRS)

    Thompson, Charles K.

    2012-01-01

    This software generates cylindrically projected tiles of swath-based or gridded satellite data for the purpose of dynamically generating high-resolution global images covering various time periods, scaling ranges, and colors called "tiles." It reconstructs a global image given a set of tiles covering a particular time range, scaling values, and a color table. The program is configurable in terms of tile size, spatial resolution, format of input data, location of input data (local or distributed), number of processes run in parallel, and data conditioning.

  5. Multilayer Impregnated Fibrous Thermal Insulation Tiles

    NASA Technical Reports Server (NTRS)

    Tran, Huy K.; Rasky, Daniel J.; Szalai, Christine e.; Hsu, Ming-ta; Carroll, Joseph A.

    2007-01-01

    The term "secondary polymer layered impregnated tile" ("SPLIT") denotes a type of ablative composite-material thermal- insulation tiles having engineered, spatially non-uniform compositions. The term "secondary" refers to the fact that each tile contains at least two polymer layers wherein endothermic reactions absorb considerable amounts of heat, thereby helping to prevent overheating of an underlying structure. These tiles were invented to afford lighter-weight alternatives to the reusable thermal-insulation materials heretofore variously used or considered for use in protecting the space shuttles and other spacecraft from intense atmospheric-entry heating.

  6. A novel surface defect inspection algorithm for magnetic tile

    NASA Astrophysics Data System (ADS)

    Xie, Luofeng; Lin, Lijun; Yin, Ming; Meng, Lintao; Yin, Guofu

    2016-07-01

    In this paper, we propose a defect extraction method for magnetic tile images based on the shearlet transform. The shearlet transform is a method of multi-scale geometric analysis. Compared with similar methods, the shearlet transform offers higher directional sensitivity and this is useful to accurately extract geometric characteristics from data. In general, a magnetic tile image captured by CCD camera mainly consists of target area, background. Our strategy for extracting the surface defects of magnetic tile comprises two steps: image preprocessing and defect extraction. Both steps are critical. After preprocessing the image, we extract the target area. Due to the low contrast in the magnetic tile image, we apply the discrete shearlet transform to enhance the contrast between the defect area and the normal area. Next, we apply a threshold method to generate a binary image. To validate our algorithm, we compare our experimental results with Otsu method, the curvelet transform and the nonsubsampled contourlet transform. Results show that our algorithm outperforms the other methods considered and can very effectively extract defects.

  7. Positive feedback fishery: Population consequences of `crab-tiling' on the green crab Carcinus maenas

    NASA Astrophysics Data System (ADS)

    Sheehan, E. V.; Thompson, R. C.; Coleman, R. A.; Attrill, M. J.

    2008-11-01

    Collection of marine invertebrates for use as fishing bait is a substantial activity in many parts of the world, often with unknown ecological consequences. As new fisheries develop, it is critical for environmental managers to have high quality ecological information regarding the potential impacts, in order to develop sound management strategies. Crab-tiling is a largely unregulated and un-researched fishery, which operates commercially in the south-west UK. The target species is the green crab Carcinus maenas. Those crabs which are pre-ecdysis and have a carapace width greater than 40 mm are collected to be sold to recreational anglers as bait. Collection involves laying artificial structures on intertidal sandflats and mudflats in estuaries. Crabs use these structures as refugia and are collected during low tide. However, the effect that this fishery has on populations of C. maenas is not known. The impact of crab-tiling on C. maenas population structure was determined by sampling crabs from tiled estuaries and non-tiled estuaries using baited drop-nets. A spatially and temporarily replicated, balanced design was used to compare crab abundance, sizes and sex ratios between estuaries. Typically, fisheries are associated with a reduction in the abundance of the target species. Crab-tiling, however, significantly increased C. maenas abundance. This was thought to be a result of the extra habitat in tiled estuaries, which probably provides protection from natural predators, such as birds and fish. Although crabs were more abundant in tiled estuaries than non-tiled estuaries, the overall percentage of reproductively active crabs in non-tiled estuaries was greater than in tiled estuaries. As with most exploited fisheries stocks, crabs in exploited (tiled) estuaries tended to be smaller, with a modal carapace width of 20-29 mm rather than 30-39 mm in non-tiled estuaries. The sex ratio of crabs however; was not significantly different between tiled and non-tiled

  8. 2D capacitive micromachined ultrasound transducer using novel tiling based on silicon frame

    NASA Astrophysics Data System (ADS)

    Kim, Youngil; Cho, Kyungil; Kim, Baehyung; Lee, Seungheun; Jeon, Taeho; Song, Jongkeun

    2013-03-01

    In this study, we showed the new transducer and probe integration of 2D ultrasound probe using cMUT. cMUT ultrasound probe having 8192 elements is assembled with tiling frame. Flip chip bonded cMUT-ASIC tiles were arrayed along 2×8 directions to enlarge lateral aperture. Tiling gap between two tiles was under 100μm. RTV layer that has 1mm thick is used in 2-D probe system as a lens and protection layer. Thermal module is also analyzed by using the thermal network analysis, which is realized with the air fans and the fins. Designed PCB circuit for tiling module which is considered with cooling spread concept is 5cm × 5cm dimension. Uniformity and performance of tiled ultrasound transducer were tested under soybean oil at 3MHz frequency successfully. The measured 256 elements distribution has only 4.45% deviation. If we can remove the side edge error, the deviation will be under 3%. The performance after RTV lensing showed 35% attenuation in Tx and 35~45% attenuation in Rx.

  9. A brief introduction to tiling microarrays: principles, concepts, and applications.

    PubMed

    Lemetre, Christophe; Zhang, Zhengdong D

    2013-01-01

    Technological achievements have always contributed to the advancement of biomedical research. It has never been more so than in recent times, when the development and application of innovative cutting-edge technologies have transformed biology into a data-rich quantitative science. This stunning revolution in biology primarily ensued from the emergence of microarrays over two decades ago. The completion of whole-genome sequencing projects and the advance in microarray manufacturing technologies enabled the development of tiling microarrays, which gave unprecedented genomic coverage. Since their first description, several types of application of tiling arrays have emerged, each aiming to tackle a different biological problem. Although numerous algorithms have already been developed to analyze microarray data, new method development is still needed not only for better performance but also for integration of available microarray data sets, which without doubt constitute one of the largest collections of biological data ever generated. In this chapter we first introduce the principles behind the emergence and the development of tiling microarrays, and then discuss with some examples how they are used to investigate different biological problems.

  10. Thermal Characterization of TPS Tiles

    SciTech Connect

    Kacmar, C. J.; LaCivita, K. J.; Jata, K. V.; Sathish, S.

    2006-03-06

    The Thermal Protection System (TPS) used on space shuttles protects the metallic structure from the large amounts of heat created during travel through the atmosphere, both on takeoff and reentry. The shuttle experiences high thermo-acoustic loading and impact damage from micro-meteorites, which can cause disbonds, delaminations, chips, cracks, and other defects to the TPS system. To enhance durability and damage tolerance, new TPS tiles with an added protective ceramic-matrix-composite layer are being developed. This paper explores the use of pulsed thermography as a quick, diverse, non-destructive technique, to characterize the TPS system. The pulsed thermography images obtained are presented and analyzed.

  11. Thermal Characterization of TPS Tiles

    NASA Astrophysics Data System (ADS)

    Kacmar, C. J.; LaCivita, K. J.; Jata, K. V.; Sathish, S.

    2006-03-01

    The Thermal Protection System (TPS) used on space shuttles protects the metallic structure from the large amounts of heat created during travel through the atmosphere, both on takeoff and reentry. The shuttle experiences high thermo-acoustic loading and impact damage from micro-meteorites, which can cause disbonds, delaminations, chips, cracks, and other defects to the TPS system. To enhance durability and damage tolerance, new TPS tiles with an added protective ceramic-matrix-composite layer are being developed. This paper explores the use of pulsed thermography as a quick, diverse, non-destructive technique, to characterize the TPS system. The pulsed thermography images obtained are presented and analyzed.

  12. Parametric Multi-Level Tiling of Imperfectly Nested Loops

    SciTech Connect

    Hartono, Albert; Baskaran, Muthu M.; Bastoul, Cedric; Cohen, Albert; Krishnamoorthy, Sriram; Norris, Boyana; Ramanujam, J.; Sadayappan, Ponnuswamy

    2009-05-18

    Tiling is a critical loop transformation for generating high-performance code on modern architectures. Efficient generation of multilevel tiled code is essential to exploit several levels of parallelism and/or to maximize data reuse in deep memory hierarchies. Tiled loops with parameterized tile sizes (not compile time constants) facilitate runtime feedback and dynamic optimizations used in iterative compilation and automatic tuning. The existing parametric multilevel tiling approach has focused on transformation for perfectly nested loops, where all assignment statements are contained inside the innermost loop of a loop nest. Previous solutions to tiling for imperfect loop nests are limited to the case where tile sizes are fixed. In this paper, we present an approach to parameterized multilevel tiling for imperfectly nested loops. Our tiling algorithm generates loops that iterate over full rectangular tiles that are amenable for potential compiler optimizations such as register tiling. Experimental results using a number of computational benchmarks demonstrate the effectiveness of our tiling approach.

  13. The Sad Case of the Columbine Tiles.

    ERIC Educational Resources Information Center

    Dowling-Sendor, Benjamin

    2003-01-01

    Analyzes free-speech challenge to school district's guidelines for acceptable expressions on ceramic tiles painted by Columbine High School students to express their feelings about the massacre. Tenth Circuit found that tile painting constituted school-sponsored speech and thus district had the constitutional authority under "Hazelwood School…

  14. Bonding Heat-Resistant Fabric to Tile

    NASA Technical Reports Server (NTRS)

    Holt, J. W.; Smiser, L. W.

    1985-01-01

    Acid etching, densification, and silica cement ensure strong bond. Key step in preparation for bonding to glazed tile is etching quartz fabric and tile with acid. This increases adhesion of silica cement used to form bond. Procedures use high-temperature materials exclusively and therefore suitable for securing flexible seals and heat barriers around doors and viewing ports in furnaces and kilns.

  15. Wind-Resistant Filler for Tile Gaps

    NASA Technical Reports Server (NTRS)

    Bellavia, J.; Quigley, I. A.; Callahan, T. S.

    1982-01-01

    Filler developed for gaps between insulating tiles on Space Shuttle finds application in industries that use tiles for thermal or environmental protection. Filler consists of tight-fitting ceramic tubes and fibrous alumina. Combination resists high wind loads while providing requisite heat protection. Quartz-thread stitching holds envelope together.

  16. Shaving Ceramic Tiles To Final Dimensions

    NASA Technical Reports Server (NTRS)

    Shaw, Ernest

    1992-01-01

    Combination of template and routing tool cuts ceramic tiles to final dimensions. Template guides router along precisely defined planes to accurately and uniformly shave chamfers on edge of tiles. Legs of template temporarily bonded to workpiece by double-backed adhesive tape. Adaptable to in-situ final machining of other nominally flat, narrow surfaces.

  17. Association between chromosomal aberration of COX8C and tethered spinal cord syndrome: array-based comparative genomic hybridization analysis

    PubMed Central

    Zhao, Qiu-jiong; Bai, Shao-cong; Cheng, Cheng; Tao, Ben-zhang; Wang, Le-kai; Liang, Shuang; Yin, Ling; Hang, Xing-yi; Shang, Ai-jia

    2016-01-01

    Copy number variations have been found in patients with neural tube abnormalities. In this study, we performed genome-wide screening using high-resolution array-based comparative genomic hybridization in three children with tethered spinal cord syndrome and two healthy parents. Of eight copy number variations, four were non-polymorphic. These non-polymorphic copy number variations were associated with Angelman and Prader-Willi syndromes, and microcephaly. Gene function enrichment analysis revealed that COX8C, a gene associated with metabolic disorders of the nervous system, was located in the copy number variation region of Patient 1. Our results indicate that array-based comparative genomic hybridization can be used to diagnose tethered spinal cord syndrome. Our results may help determine the pathogenesis of tethered spinal cord syndrome and prevent occurrence of this disease.

  18. Association between chromosomal aberration of COX8C and tethered spinal cord syndrome: array-based comparative genomic hybridization analysis

    PubMed Central

    Zhao, Qiu-jiong; Bai, Shao-cong; Cheng, Cheng; Tao, Ben-zhang; Wang, Le-kai; Liang, Shuang; Yin, Ling; Hang, Xing-yi; Shang, Ai-jia

    2016-01-01

    Copy number variations have been found in patients with neural tube abnormalities. In this study, we performed genome-wide screening using high-resolution array-based comparative genomic hybridization in three children with tethered spinal cord syndrome and two healthy parents. Of eight copy number variations, four were non-polymorphic. These non-polymorphic copy number variations were associated with Angelman and Prader-Willi syndromes, and microcephaly. Gene function enrichment analysis revealed that COX8C, a gene associated with metabolic disorders of the nervous system, was located in the copy number variation region of Patient 1. Our results indicate that array-based comparative genomic hybridization can be used to diagnose tethered spinal cord syndrome. Our results may help determine the pathogenesis of tethered spinal cord syndrome and prevent occurrence of this disease. PMID:27651783

  19. Association between chromosomal aberration of COX8C and tethered spinal cord syndrome: array-based comparative genomic hybridization analysis.

    PubMed

    Zhao, Qiu-Jiong; Bai, Shao-Cong; Cheng, Cheng; Tao, Ben-Zhang; Wang, Le-Kai; Liang, Shuang; Yin, Ling; Hang, Xing-Yi; Shang, Ai-Jia

    2016-08-01

    Copy number variations have been found in patients with neural tube abnormalities. In this study, we performed genome-wide screening using high-resolution array-based comparative genomic hybridization in three children with tethered spinal cord syndrome and two healthy parents. Of eight copy number variations, four were non-polymorphic. These non-polymorphic copy number variations were associated with Angelman and Prader-Willi syndromes, and microcephaly. Gene function enrichment analysis revealed that COX8C, a gene associated with metabolic disorders of the nervous system, was located in the copy number variation region of Patient 1. Our results indicate that array-based comparative genomic hybridization can be used to diagnose tethered spinal cord syndrome. Our results may help determine the pathogenesis of tethered spinal cord syndrome and prevent occurrence of this disease. PMID:27651783

  20. Performance of the Tile PreProcessor Demonstrator for the ATLAS Tile Calorimeter Phase II Upgrade

    NASA Astrophysics Data System (ADS)

    Carrió, F.; Moreno, P.; Valero, A.

    2016-03-01

    The Tile Calorimeter PreProcessor demonstrator is a high performance double AMC board based on FPGA resources and QSFP modules. This board has been designed in the framework of the ATLAS Tile Calorimeter Demonstrator project for the Phase II Upgrade as the first stage of the back-end electronics. The TilePPr demonstrator has been conceived to receive and process the data coming from the front-end electronics of the TileCal Demonstrator module, as well as to configure it. Moreover, the TilePPr demonstrator handles the communication with the Detector Control System to monitor and control the front-end electronics. The TilePPr demonstrator represents 1/8 of the final TilePPr that will be designed and installed into the detector for the ATLAS Phase II Upgrade.

  1. 2q23.1 microdeletion identified by array comparative genomic hybridisation: an emerging phenotype with Angelman-like features?

    PubMed Central

    Jaillard, Sylvie; Dubourg, Christèle; Gérard-Blanluet, Marion; Delahaye, Andrée; Pasquier, Laurent; Dupont, Céline; Henry, Catherine; Tabet, Anne-Claude; Lucas, Josette; Aboura, Azzedine; David, Véronique; Benzacken, Brigitte; Odent, Sylvie; Pipiras, Eva

    2009-01-01

    Background Genome-wide screening of patients with mental retardation using Array Comparative Genomic Hybridization (array-CGH) has identified several novel imbalances. With this genotype-first approach, the 2q22.3q23.3 deletion was recently described as a novel microdeletion syndrome. We report two unrelated patients with a de novo interstitial deletion mapping in this genomic region and presenting similar “pseudo-Angelman” phenotypes, including severe psychomotor retardation, speech impairment, epilepsy, microcephaly, ataxia and behavioural disabilities. Methods The microdeletions were identified by array-CGH using oligonucleotide and BAC-arrays, and further confirmed by Fluorescence In Situ Hybridization (FISH) and semi-quantitative PCR. Results The boundaries and sizes of the deletions in the two patients were different but an overlapping region of about 250 kb was defined, which mapped to 2q23.1 and included two genes: MBD5 and EPC2. The SIP1 gene associated with the Mowat Wilson syndrome was not included in the deleted genomic region. Discussion Haploinsufficiency of one of the deleted genes (MBD5 or EPC2) could be responsible for the common clinical features observed in the 2q23.1 microdeletion syndrome and this hypothesis needs further investigation. PMID:18812405

  2. Consistency and derangements in brane tilings

    NASA Astrophysics Data System (ADS)

    Hanany, Amihay; Jejjala, Vishnu; Ramgoolam, Sanjaye; Seong, Rak-Kyeong

    2016-09-01

    Brane tilings describe Lagrangians (vector multiplets, chiral multiplets, and the superpotential) of four-dimensional { N }=1 supersymmetric gauge theories. These theories, written in terms of a bipartite graph on a torus, correspond to worldvolume theories on N D3-branes probing a toric Calabi–Yau threefold singularity. A pair of permutations compactly encapsulates the data necessary to specify a brane tiling. We show that geometric consistency for brane tilings, which ensures that the corresponding quantum field theories are well behaved, imposes constraints on the pair of permutations, restricting certain products constructed from the pair to have no one-cycles. Permutations without one-cycles are known as derangements. We illustrate this formulation of consistency with known brane tilings. Counting formulas for consistent brane tilings with an arbitrary number of chiral bifundamental fields are written down in terms of delta functions over symmetric groups.

  3. Consistency and derangements in brane tilings

    NASA Astrophysics Data System (ADS)

    Hanany, Amihay; Jejjala, Vishnu; Ramgoolam, Sanjaye; Seong, Rak-Kyeong

    2016-09-01

    Brane tilings describe Lagrangians (vector multiplets, chiral multiplets, and the superpotential) of four-dimensional { N }=1 supersymmetric gauge theories. These theories, written in terms of a bipartite graph on a torus, correspond to worldvolume theories on N D3-branes probing a toric Calabi-Yau threefold singularity. A pair of permutations compactly encapsulates the data necessary to specify a brane tiling. We show that geometric consistency for brane tilings, which ensures that the corresponding quantum field theories are well behaved, imposes constraints on the pair of permutations, restricting certain products constructed from the pair to have no one-cycles. Permutations without one-cycles are known as derangements. We illustrate this formulation of consistency with known brane tilings. Counting formulas for consistent brane tilings with an arbitrary number of chiral bifundamental fields are written down in terms of delta functions over symmetric groups.

  4. Peptide based diagnostics: are random-sequence peptides more useful than tiling proteome sequences?

    PubMed

    Navalkar, Krupa Arun; Johnston, Stephan Albert; Stafford, Phillip

    2015-02-01

    Diagnostics using peptide ligands have been available for decades. However, their adoption in diagnostics has been limited, not because of poor sensitivity but in many cases due to diminished specificity. Numerous reports suggest that protein-based rather than peptide-based disease detection is more specific. We examined two different approaches to peptide-based diagnostics using Coccidioides (aka Valley Fever) as the disease model. Although the pathogen was discovered more than a century ago, a highly sensitive diagnostic remains unavailable. We present a case study where two different approaches to diagnosing Valley Fever were used: first, overlapping Valley Fever epitopes representing immunodominant Coccidioides antigens were tiled using a microarray format of presynthesized peptides. Second, a set of random sequence peptides identified using a 10,000 peptide immunosignaturing microarray was compared for sensitivity and specificity. The scientific hypothesis tested was that actual epitope peptides from Coccidioides would provide sufficient sensitivity and specificity as a diagnostic. Results demonstrated that random sequence peptides exhibited higher accuracy when classifying different stages of Valley Fever infection vs. epitope peptides. The epitope peptide array did provide better performance than the existing immunodiffusion array, but when directly compared to the random sequence peptides, reported lower overall accuracy. This study suggests that there are competing aspects of antibody recognition that involve conservation of pathogen sequence and aspects of mimotope recognition and amino acid substitutions. These factors may prove critical when developing the next generation of high-performance immunodiagnostics.

  5. Lozenge Tilings with Free Boundaries

    NASA Astrophysics Data System (ADS)

    Panova, Greta

    2015-11-01

    We study lozenge tilings of a domain with partially free boundary. In particular, we consider a trapezoidal domain (half-hexagon), s.t. the horizontal lozenges on the long side can intersect it anywhere to protrude halfway across. We show that the positions of the horizontal lozenges near the opposite flat vertical boundary have the same joint distribution as the eigenvalues from a Gaussian Unitary Ensemble (the GUE-corners/minors process). We also prove the existence of a limit shape of the height function, which is also a vertically symmetric plane partition. Both behaviors are shown to coincide with those of the corresponding doubled fixed boundary hexagonal domain. We also consider domains where the different sides converge to {∞} at different rates and recover again the GUE-corners process near the boundary.

  6. Seamless stitching of tile scan microscope images.

    PubMed

    Legesse, F B; Chernavskaia, O; Heuke, S; Bocklitz, T; Meyer, T; Popp, J; Heintzmann, R

    2015-06-01

    For diagnostic purposes, optical imaging techniques need to obtain high-resolution images of extended biological specimens in reasonable time. The field of view of an objective lens, however, is often smaller than the sample size. To image the whole sample, laser scanning microscopes acquire tile scans that are stitched into larger mosaics. The appearance of such image mosaics is affected by visible edge artefacts that arise from various optical aberrations which manifest in grey level jumps across tile boundaries. In this contribution, a technique for stitching tiles into a seamless mosaic is presented. The stitching algorithm operates by equilibrating neighbouring edges and forcing the brightness at corners to a common value. The corrected image mosaics appear to be free from stitching artefacts and are, therefore, suited for further image analysis procedures. The contribution presents a novel method to seamlessly stitch tiles captured by a laser scanning microscope into a large mosaic. The motivation for the work is the failure of currently existing methods for stitching nonlinear, multimodal images captured by our microscopic setups. Our method eliminates the visible edge artefacts that appear between neighbouring tiles by taking into account the overall illumination differences among tiles in such mosaics. The algorithm first corrects the nonuniform brightness that exists within each of the tiles. It then compensates for grey level differences across tile boundaries by equilibrating neighbouring edges and forcing the brightness at the corners to a common value. After these artefacts have been removed further image analysis procedures can be applied on the microscopic images. Even though the solution presented here is tailored for the aforementioned specific case, it could be easily adapted to other contexts where image tiles are assembled into mosaics such as in astronomical or satellite photos.

  7. Fibrous-Ceramic/Aerogel Composite Insulating Tiles

    NASA Technical Reports Server (NTRS)

    White, Susan M.; Rasky, Daniel J.

    2004-01-01

    Fibrous-ceramic/aerogel composite tiles have been invented to afford combinations of thermal-insulation and mechanical properties superior to those attainable by making tiles of fibrous ceramics alone or aerogels alone. These lightweight tiles can be tailored to a variety of applications that range from insulating cryogenic tanks to protecting spacecraft against re-entry heating. The advantages and disadvantages of fibrous ceramics and aerogels can be summarized as follows: Tiles made of ceramic fibers are known for mechanical strength, toughness, and machinability. Fibrous ceramic tiles are highly effective as thermal insulators in a vacuum. However, undesirably, the porosity of these materials makes them permeable by gases, so that in the presence of air or other gases, convection and gas-phase conduction contribute to the effective thermal conductivity of the tiles. Other disadvantages of the porosity and permeability of fibrous ceramic tiles arise because gases (e.g., water vapor or cryogenic gases) can condense in pores. This condensation contributes to weight, and in the case of cryogenic systems, the heat of condensation undesirably adds to the heat flowing to the objects that one seeks to keep cold. Moreover, there is a risk of explosion associated with vaporization of previously condensed gas upon reheating. Aerogels offer low permeability, low density, and low thermal conductivity, but are mechanically fragile. The basic idea of the present invention is to exploit the best features of fibrous ceramic tiles and aerogels. In a composite tile according to the invention, the fibrous ceramic serves as a matrix that mechanically supports the aerogel, while the aerogel serves as a low-conductivity, low-permeability filling that closes what would otherwise be the open pores of the fibrous ceramic. Because the aerogel eliminates or at least suppresses permeation by gas, gas-phase conduction, and convection, the thermal conductivity of such a composite even at

  8. Remotely replaceable tokamak plasma limiter tiles

    DOEpatents

    Gallix, R.

    1987-12-09

    U-shaped tiles placed end-to-end over a pair of parallel runners have two rods which engage L-shaped slots. A sliding bar between the runners has grooves with clips to retain the rods pressed into receiving legs of the L-shaped slots in the runners. Sliding the bar in the direction of retaining legs of the L-shaped slots latches the tiles in place over the wall. Resilient contact strips under the parallel sides of the U-shaped tile assure thermal and electrical contact with the wall. 6 figs.

  9. Aerogel: Tile Composites Toughen a Brittle Superinsulation

    NASA Technical Reports Server (NTRS)

    White, Susan; Rasky, Daniel; Arnold, James O. (Technical Monitor)

    1998-01-01

    Pure aerogels, though familiar in the laboratory for decades as exotic lightweight insulators with unusual physical properties, have had limited industrial applications due to their low strength and high brittleness. Composites formed of aerogels and the ceramic fiber matrices used as space shuttle tiles bypass the fragility of pure aerogels and can enhance the performance of space shuttle tiles in their harsh operating environment. Using a layer of aerogel embedded in a tile may open up a wide range of applications where thermal insulation, gas convection control and mechanical strength matter.

  10. Aerogel: Tile Composites Toughen a Brittle Superinsulation

    NASA Technical Reports Server (NTRS)

    White, Susan; Rasky, Daniel; Arnold, James O. (Technical Monitor)

    1998-01-01

    Pure aerogels, though familiar in the laboratory for decades as exotic lightweight insulators with unusual physical properties, have had limited industrial applications due to their low strength and high brittleness. Composites formed of aerogels and the ceramic fiber matrices like those used as space shuttle tiles bypass the fragility of pure aerogels and can enhance the performance of space shuttle tiles in their harsh operating environment. Using a layer of aerogel embedded in a tile may open up a wide range of applications where thermal insulation, gas convection control and mechanical strength matter.

  11. The challenging scales of the bird: Shuttle tile structural integrity

    NASA Technical Reports Server (NTRS)

    Schneider, W. C.; Miller, G. J.

    1985-01-01

    The principal design issues, tests, and analyses required to solve the tile integrity problem on the space shuttle orbiters are addressed. Proof testing of installed tiles is discussed along with an airflow test of special tiles. Orbiter windshield tiles are considered in terms of changes necessary to ensure acceptable margins of safety for flight.

  12. Characterization of Genomic Alterations in Radiation-Associated Breast Cancer among Childhood Cancer Survivors, Using Comparative Genomic Hybridization (CGH) Arrays

    PubMed Central

    Yang, Xiaohong R.; Killian, J. Keith; Hammond, Sue; Burke, Laura S.; Bennett, Hunter; Wang, Yonghong; Davis, Sean R.; Strong, Louise C.; Neglia, Joseph; Stovall, Marilyn; Weathers, Rita E.; Robison, Leslie L.; Bhatia, Smita; Mabuchi, Kiyohiko; Inskip, Peter D.; Meltzer, Paul

    2015-01-01

    Ionizing radiation is an established risk factor for breast cancer. Epidemiologic studies of radiation-exposed cohorts have been primarily descriptive; molecular events responsible for the development of radiation-associated breast cancer have not been elucidated. In this study, we used array comparative genomic hybridization (array-CGH) to characterize genome-wide copy number changes in breast tumors collected in the Childhood Cancer Survivor Study (CCSS). Array-CGH data were obtained from 32 cases who developed a second primary breast cancer following chest irradiation at early ages for the treatment of their first cancers, mostly Hodgkin lymphoma. The majority of these cases developed breast cancer before age 45 (91%, n = 29), had invasive ductal tumors (81%, n = 26), estrogen receptor (ER)-positive staining (68%, n = 19 out of 28), and high proliferation as indicated by high Ki-67 staining (77%, n = 17 out of 22). Genomic regions with low-copy number gains and losses and high-level amplifications were similar to what has been reported in sporadic breast tumors, however, the frequency of amplifications of the 17q12 region containing human epidermal growth factor receptor 2 (HER2) was much higher among CCSS cases (38%, n = 12). Our findings suggest that second primary breast cancers in CCSS were enriched for an “amplifier” genomic subgroup with highly proliferative breast tumors. Future investigation in a larger irradiated cohort will be needed to confirm our findings. PMID:25764003

  13. Characterization of genomic alterations in radiation-associated breast cancer among childhood cancer survivors, using comparative genomic hybridization (CGH) arrays.

    PubMed

    Yang, Xiaohong R; Killian, J Keith; Hammond, Sue; Burke, Laura S; Bennett, Hunter; Wang, Yonghong; Davis, Sean R; Strong, Louise C; Neglia, Joseph; Stovall, Marilyn; Weathers, Rita E; Robison, Leslie L; Bhatia, Smita; Mabuchi, Kiyohiko; Inskip, Peter D; Meltzer, Paul

    2015-01-01

    Ionizing radiation is an established risk factor for breast cancer. Epidemiologic studies of radiation-exposed cohorts have been primarily descriptive; molecular events responsible for the development of radiation-associated breast cancer have not been elucidated. In this study, we used array comparative genomic hybridization (array-CGH) to characterize genome-wide copy number changes in breast tumors collected in the Childhood Cancer Survivor Study (CCSS). Array-CGH data were obtained from 32 cases who developed a second primary breast cancer following chest irradiation at early ages for the treatment of their first cancers, mostly Hodgkin lymphoma. The majority of these cases developed breast cancer before age 45 (91%, n = 29), had invasive ductal tumors (81%, n = 26), estrogen receptor (ER)-positive staining (68%, n = 19 out of 28), and high proliferation as indicated by high Ki-67 staining (77%, n = 17 out of 22). Genomic regions with low-copy number gains and losses and high-level amplifications were similar to what has been reported in sporadic breast tumors, however, the frequency of amplifications of the 17q12 region containing human epidermal growth factor receptor 2 (HER2) was much higher among CCSS cases (38%, n = 12). Our findings suggest that second primary breast cancers in CCSS were enriched for an "amplifier" genomic subgroup with highly proliferative breast tumors. Future investigation in a larger irradiated cohort will be needed to confirm our findings. PMID:25764003

  14. High-Strength, Low-Shrinkage Ceramic Tiles

    NASA Technical Reports Server (NTRS)

    Wheeler, W. H.; Creedon, J. F.

    1986-01-01

    Addition of refractory fibers and whiskers to insulating tiles composed primarily of fibrous silica, such as those used on the skin of Space Shuttle orbiter, greatly improves properties. New composition suitable for lightweight, thermally-stable mirror blanks and as furnace and kiln insulation. Improved tiles made with current tile-fabrication processes. For given density, tiles containing silicon carbide and boron additives stronger in flexure than tiles made from silica alone. In addition, tiles with additives nearly immune to heat distortion, whereas pure-silica tiles shrink and become severely distorted.

  15. Improved blood culture identification by FilmArray in cultures from regional hospitals compared with teaching hospital cultures.

    PubMed

    Inglis, Timothy J J; Bzdyl, Nicole; Chua, I-Ly Joanna; Urosevic, Nadezda M; Leung, Michael J; Geelhoed, Elizabeth

    2016-01-01

    Rapid identification of bacteria isolated from blood cultures by direct matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) is now in wide spread use in major centres but is not yet feasible in smaller hospital laboratories. A FilmArray multiplex PCR panel for blood culture isolate identification (BCID) provides an alternative approach to near point-of-care microbial identification in regional hospitals. We assessed the accuracy and time to identification of the BCID FilmArray in a consecutive series of 149 blood cultures from 143 patients in a teaching hospital and smaller regional hospitals, currently identified by direct MALDI-TOF and proprietary molecular methods. The BCID FilmArray contained 18 of 34 species and 20 of 23 species isolated from teaching and regional hospital, respectively. Overall, 85 % of the teaching hospital and 100 % of the regional hospital monomicrobial blood cultures were identified, compared with 60 and 68 %, respectively, for direct MALDI-TOF on the same cultures. There were no incorrect results from blood cultures containing Staphylococcus aureus, streptococci, Pseudomonas aeruginosa or Enterobacteriaceae. The three discrepant results were all in mixed cultures. The mean reduction in time to identification of blood culture isolates was 53 h, which did not include the time required to transport cultures from regional centres to a central laboratory. The overall performance of the BCID FilmArray is stronger in blood cultures from smaller regional hospitals that encounter a narrower range of bacterial species dominated by the commonest species. This approach is more suited to smaller clinical laboratories than the MALDI-TOF direct method.

  16. The use of waste ceramic tile in cement production

    SciTech Connect

    Ay, N.; Uenal, M.

    2000-03-01

    In ceramic tile production, because of various reasons, unsold fired products come out. These are waste tiles and only a little part of them are used. Remainings create environmental problems. If these waste tiles are used in cement production, this pollution decreases. In this study, usage of waste tile as pozzolan was studied. Waste tile was added into Portland cement in 25%, 30%, 35%, and 40% weight ratios. Pozzolanic properties of waste tile and setting time, volume stability, particle size, density, specific surface area, and strength of cement including waste tile were investigated. The test results indicated that the waste tiles show pozzolanic properties, and chemical and physical properties of the cement including tile conforms to cement standard up to the addition of 35% waste tile.

  17. Heat Transfer Measurement and Modeling in Rigid High-Temperature Reusable Surface Insulation Tiles

    NASA Technical Reports Server (NTRS)

    Daryabeigi, Kamran; Knutson, Jeffrey R.; Cunnington, George R.

    2011-01-01

    Heat transfer in rigid reusable surface insulations was investigated. Steady-state thermal conductivity measurements in a vacuum were used to determine the combined contribution of radiation and solid conduction components of heat transfer. Thermal conductivity measurements at higher pressures were then used to estimate the effective insulation characteristic length for gas conduction modeling. The thermal conductivity of the insulation can then be estimated at any temperature and pressure in any gaseous media. The methodology was validated by comparing estimated thermal conductivities with published data on a rigid high-temperature silica reusable surface insulation tile. The methodology was also applied to the alumina enhanced thermal barrier tiles. Thermal contact resistance for thermal conductivity measurements on rigid tiles was also investigated. A technique was developed to effectively eliminate thermal contact resistance on the rigid tile s cold-side surface for the thermal conductivity measurements.

  18. Comparison of array comparative genomic hybridization and quantitative real-time PCR-based aneuploidy screening of blastocyst biopsies

    PubMed Central

    Capalbo, Antonio; Treff, Nathan R; Cimadomo, Danilo; Tao, Xin; Upham, Kathleen; Ubaldi, Filippo Maria; Rienzi, Laura; Scott, Richard T

    2015-01-01

    Comprehensive chromosome screening (CCS) methods are being extensively used to select chromosomally normal embryos in human assisted reproduction. Some concerns related to the stage of analysis and which aneuploidy screening method to use still remain. In this study, the reliability of blastocyst-stage aneuploidy screening and the diagnostic performance of the two mostly used CCS methods (quantitative real-time PCR (qPCR) and array comparative genome hybridization (aCGH)) has been assessed. aCGH aneuploid blastocysts were rebiopsied, blinded, and evaluated by qPCR. Discordant cases were subsequently rebiopsied, blinded, and evaluated by single-nucleotide polymorphism (SNP) array-based CCS. Although 81.7% of embryos showed the same diagnosis when comparing aCGH and qPCR-based CCS, 18.3% (22/120) of embryos gave a discordant result for at least one chromosome. SNP array reanalysis showed that a discordance was reported in ten blastocysts for aCGH, mostly due to false positives, and in four cases for qPCR. The discordant aneuploidy call rate per chromosome was significantly higher for aCGH (5.7%) compared with qPCR (0.6% P<0.01). To corroborate these findings, 39 embryos were simultaneously biopsied for aCGH and qPCR during blastocyst-stage aneuploidy screening cycles. 35 matched including all 21 euploid embryos. Blinded SNP analysis on rebiopsies of the four embryos matched qPCR. These findings demonstrate the high reliability of diagnosis performed at the blastocyst stage with the use of different CCS methods. However, the application of aCGH can be expected to result in a higher aneuploidy rate than other contemporary methods of CCS. PMID:25351780

  19. Applied physics: The virtues of tiling

    NASA Astrophysics Data System (ADS)

    Fratzl, Peter

    2014-12-01

    A cracked metal film on an elastic substrate has been shown to provide ultrahigh sensitivity in detecting mechanical vibrations. The result draws inspiration from principles of tiling that apply to many biological systems. See Letter p.222

  20. A Comparative Analysis for Verification of IMRT and VMAT Treatment Plans using a 2-D and 3-D Diode Array

    NASA Astrophysics Data System (ADS)

    Dance, Michael J.

    With the added complexity of current radiation treatment dose delivery modalities such as IMRT (Intensity Modulated Radiation Therapy) and VMAT (Volumetric Modulated Arc Therapy), quality assurance (QA) of these plans become multifaceted and labor intensive. To simplify the patient specific quality assurance process, 2D or 3D diode arrays are used to measure the radiation fluence for IMRT and VMAT treatments which can then be quickly and easily compared against the planned dose distribution. Because the arrays that can be used for IMRT and VMAT patient-specific quality assurance are of different geometry (planar vs. cylindrical), the same IMRT or VMAT treatment plan measured by two different arrays could lead to different measured radiation fluences, regardless of the output and performance of linear accelerator. Thus, the purpose of this study is to compare patient specific QA results as measured by the MapCHECK 2 and ArcCHECK diode arrays for the same IMRT and VMAT treatment plans to see if one diode array consistently provides a closer comparison to reference data. Six prostate and three thoracic spine IMRT treatment plans as well as three prostate and three thoracic spine VMAT treatment plans were produced. Radiotherapy plans for this study were generated using the Pinnacle TPS v9.6 (Philips Radiation Oncology Systems, Fitchburg, WI) using 6 MV, 6 MV FFF, and 10 MV x-ray beams from a Varian TrueBeam linear accelerator (Varian Medical Systems, Palo Alto, CA) with a 120-millenium multi-leaf collimator (MLC). Each IMRT and VMAT therapy plan was measured on Sun Nuclear's MapCHECK 2 and ArcCHECK diode arrays. IMRT measured data was compared with planned dose distribution using Sun Nuclear's 3DVH quality assurance software program using gamma analysis and dose-volume histograms for target volumes and critical structures comparison. VMAT arc plans measured on the MapCHECK 2 and ArcCHECK were compared using beam-by-beam analysis with the gamma evaluation method with

  1. Slipping properties of ceramic tiles / Quantification of slip resistance

    NASA Astrophysics Data System (ADS)

    Terjek, Anita

    2013-12-01

    Regarding the research and application of ceramic tiles there is a great importance of defining precisely the interaction and friction between surfaces. Measuring slip resistance of floor coverings is a complex problem; slipperiness is always interpreted relatively. In the lack of a consistent and clear EU standard, it is practical to use more method in combination. It is necessary to examine the structure of materials in order to get adequate correlation. That is why measuring techniques of surface roughness, an important contributor to slip resistance and cleaning, is fundamental in the research. By comparing the obtained test results, relationship between individual methods of analysis and values may be determined and based on these information recommendations shall be prepared concerning the selection and application of tiles.

  2. Cutting Symmetrical Recesses In Soft Ceramic Tiles

    NASA Technical Reports Server (NTRS)

    Nesotas, Tony C.; Tyler, Brent

    1989-01-01

    Simple tool cuts hemispherical recesses in soft ceramic tiles. Designed to expose wires of thermocouples embedded in tiles without damaging leads. Creates neat, precise holes around wires. End mill includes axial hole to accommodate thermocouple wires embedded in material to be cut. Wires pass into hole without being bent or broken. Dimensions in inches. Used in place of such tools as dental picks, tweezers, spatulas, and putty knives.

  3. Manufacture of ceramic tiles from fly ash

    SciTech Connect

    Hnat, J.G.; Mathur, A.; Simpson, J.C.

    1999-08-10

    The present invention relates to a process for forming glass-ceramic tiles. Fly ash containing organic material, metal contaminants, and glass forming materials is oxidized under conditions effective to combust the organic material and partially oxidize the metallic contaminants and the glass forming materials. The oxidized glass forming materials are vitrified to form a glass melt. This glass melt is then formed into tiles containing metallic contaminants. 6 figs.

  4. Manufacture of ceramic tiles from fly ash

    SciTech Connect

    Hnat, James G.; Mathur, Akshay; Simpson, James C.

    1999-01-01

    The present invention relates to a process for forming glass-ceramic tiles. Fly ash containing organic material, metal contaminants, and glass forming materials is oxidized under conditions effective to combust the organic material and partially oxidize the metallic contaminants and the glass forming materials. The oxidized glass forming materials are vitrified to form a glass melt. This glass melt is then formed into tiles containing metallic contaminants.

  5. An assessment of the cost of microwave sintering ceramic tiles for armor applications: Phase 2 report

    SciTech Connect

    Das, S.; Curlee, T.R.

    1995-03-01

    This report documents the findings of the second phase of work to assess the costs of microwave sintering ceramic tiles for armor applications. In the first phase of work, the cost of microwave sintering and preliminary estimates of the total cost of microwave-sintered tiles under two microwave frequencies (i.e., 2.45 GHz and 28 GHz) for alumina and silicon carbide materials were reported. The second phase of work extends to the previous work to include all pre- and post-sintering manufacturing steps and considers process and cost variations in these steps that may result from the adoption of microwave sintering. Two separate models were developed for two different materials. As before, a process-cost approach was utilized within a spreadsheet environment. When compared to conventional sintering, the manufacturing of microwave-sintered alumina armor tiles will require an additional binder removal step prior to microwave sintering. The base-case cost of microwave-sintered alumina tiles is estimated to be $46.80/part and $50.50/part, given the use of 2.45 GHz and 28 GHz microwave power sources, respectively. In the case of microwave sintering of silicon carbide armor tiles, the material preparation step will be significantly different from conventional sintering. Instead of a binder removal step, there will be a green machining step. The base-case cost of microwave-sintered silicon carbide tiles is estimated to be $324.50/part and $327.50/part for 2.45 GHz and 28 GHz microwave power sources, respectively--compared to $235/part for conventionally-sintered tiles. Several sensitivity analyses of the impacts of variations in key economic and technical parameters on the costs of microwave-sintered tiles were conducted. Those analyses indicate that costs are quite sensitive to changes in the quantity of energy required during sintering.

  6. Quasicrystalline tilings with nematic colloidal platelets

    PubMed Central

    Dontabhaktuni, Jayasri; Ravnik, Miha; Žumer, Slobodan

    2014-01-01

    Complex nematic fluids have the remarkable capability for self-assembling regular colloidal structures of various symmetries and dimensionality according to their micromolecular orientational order. Colloidal chains, clusters, and crystals were demonstrated recently, exhibiting soft-matter functionalities of robust binding, spontaneous chiral symmetry breaking, entanglement, shape-driven and topological driven assembly, and even memory imprinting. However, no quasicrystalline structures were found. Here, we show with numerical modeling that quasicrystalline colloidal lattices can be achieved in the form of original Penrose P1 tiling by using pentagonal colloidal platelets in layers of nematic liquid crystals. The tilings are energetically stabilized with binding energies up to 2500 kBT for micrometer-sized platelets and further allow for hierarchical substitution tiling, i.e., hierarchical pentagulation. Quasicrystalline structures are constructed bottom-up by assembling the boat, rhombus, and star maximum density clusters, thus avoiding other (nonquasicrystalline) stable or metastable configurations of platelets. Central to our design of the quasicrystalline tilings is the symmetry breaking imposed by the platelet shape and the surface anchoring conditions at the colloidal platelets, which are misaligning and asymmetric over two perpendicular mirror planes. Finally, the design of the quasicrystalline tilings as platelets in nematic liquid crystals is inherently capable of a continuous variety of length scales of the tiling, ranging over three orders of magnitude in the typical length (from to ), which could allow for the design of quasicrystalline photonics at multiple frequency ranges. PMID:24550269

  7. Tile-Based Two-Dimensional Phase Unwrapping for Digital Holography Using a Modular Framework.

    PubMed

    Antonopoulos, Georgios C; Steltner, Benjamin; Heisterkamp, Alexander; Ripken, Tammo; Meyer, Heiko

    2015-01-01

    A variety of physical and biomedical imaging techniques, such as digital holography, interferometric synthetic aperture radar (InSAR), or magnetic resonance imaging (MRI) enable measurement of the phase of a physical quantity additionally to its amplitude. However, the phase can commonly only be measured modulo 2π, as a so called wrapped phase map. Phase unwrapping is the process of obtaining the underlying physical phase map from the wrapped phase. Tile-based phase unwrapping algorithms operate by first tessellating the phase map, then unwrapping individual tiles, and finally merging them to a continuous phase map. They can be implemented computationally efficiently and are robust to noise. However, they are prone to failure in the presence of phase residues or erroneous unwraps of single tiles. We tried to overcome these shortcomings by creating novel tile unwrapping and merging algorithms as well as creating a framework that allows to combine them in modular fashion. To increase the robustness of the tile unwrapping step, we implemented a model-based algorithm that makes efficient use of linear algebra to unwrap individual tiles. Furthermore, we adapted an established pixel-based unwrapping algorithm to create a quality guided tile merger. These original algorithms as well as previously existing ones were implemented in a modular phase unwrapping C++ framework. By examining different combinations of unwrapping and merging algorithms we compared our method to existing approaches. We could show that the appropriate choice of unwrapping and merging algorithms can significantly improve the unwrapped result in the presence of phase residues and noise. Beyond that, our modular framework allows for efficient design and test of new tile-based phase unwrapping algorithms. The software developed in this study is freely available.

  8. Tile-Based Two-Dimensional Phase Unwrapping for Digital Holography Using a Modular Framework.

    PubMed

    Antonopoulos, Georgios C; Steltner, Benjamin; Heisterkamp, Alexander; Ripken, Tammo; Meyer, Heiko

    2015-01-01

    A variety of physical and biomedical imaging techniques, such as digital holography, interferometric synthetic aperture radar (InSAR), or magnetic resonance imaging (MRI) enable measurement of the phase of a physical quantity additionally to its amplitude. However, the phase can commonly only be measured modulo 2π, as a so called wrapped phase map. Phase unwrapping is the process of obtaining the underlying physical phase map from the wrapped phase. Tile-based phase unwrapping algorithms operate by first tessellating the phase map, then unwrapping individual tiles, and finally merging them to a continuous phase map. They can be implemented computationally efficiently and are robust to noise. However, they are prone to failure in the presence of phase residues or erroneous unwraps of single tiles. We tried to overcome these shortcomings by creating novel tile unwrapping and merging algorithms as well as creating a framework that allows to combine them in modular fashion. To increase the robustness of the tile unwrapping step, we implemented a model-based algorithm that makes efficient use of linear algebra to unwrap individual tiles. Furthermore, we adapted an established pixel-based unwrapping algorithm to create a quality guided tile merger. These original algorithms as well as previously existing ones were implemented in a modular phase unwrapping C++ framework. By examining different combinations of unwrapping and merging algorithms we compared our method to existing approaches. We could show that the appropriate choice of unwrapping and merging algorithms can significantly improve the unwrapped result in the presence of phase residues and noise. Beyond that, our modular framework allows for efficient design and test of new tile-based phase unwrapping algorithms. The software developed in this study is freely available. PMID:26599984

  9. Managing tile drainage, subirrigation, and nitrogen fertilization to enhance crop yields and reduce nitrate loss.

    PubMed

    Drury, C F; Tan, C S; Reynolds, W D; Welacky, T W; Oloya, T O; Gaynor, J D

    2009-01-01

    Improving field-crop use of fertilizer nitrogen is essential for protecting water quality and increasing crop yields. The objective of this study was to determine the effectiveness of controlled tile drainage (CD) and controlled tile drainage with subsurface irrigation (CDS) for mitigating off-field nitrate losses and enhancing crop yields. The CD and CDS systems were compared on a clay loam soil to traditional unrestricted tile drainage (UTD) under a corn (Zea Mays L.)-soybean (Glycine Max. (L.) Merr.) rotation at two nitrogen (N) fertilization rates (N1: 150 kg N ha(-1) applied to corn, no N applied to soybean; N2: 200 kg N ha(-1) applied to corn, 50 kg N ha(-1) applied to soybean). The N concentrations in tile flow events with the UTD treatment exceeded the provisional long-term aquatic life limit (LT-ALL) for freshwater (4.7 mg N L(-1)) 72% of the time at the N1 rate and 78% at the N2 rate, whereas only 24% of tile flow events at N1 and 40% at N2 exceeded the LT-ALL for the CDS treatment. Exceedances in N concentration for surface runoff and tile drainage were greater during the growing season than the non-growing season. At the N1 rate, CD and CDS reduced average annual N losses via tile drainage by 44 and 66%, respectively, relative to UTD. At the N2 rate, the average annual decreases in N loss were 31 and 68%, respectively. Crop yields from CDS were increased by an average of 2.8% relative to UTD at the N2 rate but were reduced by an average of 6.5% at the N1 rate. Hence, CD and CDS were effective for reducing average nitrate losses in tile drainage, but CDS increased average crop yields only when additional N fertilizer was applied.

  10. Effect of tillage on macropore flow and phosphorus transport to tile drains

    NASA Astrophysics Data System (ADS)

    Williams, Mark R.; King, Kevin W.; Ford, William; Buda, Anthony R.; Kennedy, Casey D.

    2016-04-01

    Elevated phosphorus (P) concentrations in subsurface drainage water are thought to be the result of P bypassing the soil matrix via macropore flow. The objectives of this study were to quantify event water delivery to tile drains via macropore flow paths during storm events and to determine the effect of tillage practices on event water and P delivery to tiles. Tile discharge, total dissolved P (DP) and total P (TP) concentrations, and stable oxygen and deuterium isotopic signatures were measured from two adjacent tile-drained fields in Ohio, USA during seven spring storms. Fertilizer was surface-applied to both fields and disk tillage was used to incorporate the fertilizer on one field while the other remained in no-till. Median DP concentration in tile discharge prior to fertilizer application was 0.08 mg L-1 in both fields. Following fertilizer application, median DP concentration was significantly greater in the no-tilled field (1.19 mg L-1) compared to the tilled field (0.66 mg L-1), with concentrations remaining significantly greater in the no-till field for the remainder of the monitored storms. Both DP and TP concentrations in the no-till field were significantly related to event water contributions to tile discharge, while only TP concentration was significantly related to event water in the tilled field. Event water accounted for between 26 and 69% of total tile discharge from both fields, but tillage substantially reduced maximum contributions of event water. Collectively, these results suggest that incorporating surface-applied fertilizers has the potential to substantially reduce the risk of P transport from tile-drained fields.

  11. Tile drainage phosphorus loss with long-term consistent cropping systems and fertilization.

    PubMed

    Zhang, T Q; Tan, C S; Zheng, Z M; Drury, C F

    2015-03-01

    Phosphorus (P) loss in tile drainage water may vary with agricultural practices, and the impacts are often hard to detect with short-term studies. We evaluated the effects of long-term (≥43 yr) cropping systems (continuous corn [CC], corn-oats-alfalfa-alfalfa rotation [CR], and continuous grass [CS]) and fertilization (fertilization [F] vs. no-fertilization [NF]) on P loss in tile drainage water from a clay loam soil over a 4-yr period. Compared with NF, long-term fertilization increased concentrations and losses of dissolved reactive P (DRP), dissolved unreactive P (DURP), and total P (TP) in tile drainage water, with the increments following the order: CS > CR > CC. Dissolved P (dissolved reactive P [DRP] and dissolved unreactive P [DURP]) was the dominant P form in drainage outflow, accounting for 72% of TP loss under F-CS, whereas particulate P (PP) was the major form of TP loss under F-CC (72%), F-CR (62%), NF-CS (66%), NF-CC (74%), and NF-CR (72%). Dissolved unreactive P played nearly equal roles as DRP in P losses in tile drainage water. Stepwise regression analysis showed that the concentration of P (DRP, DURP, and PP) in tile drainage flow, rather than event flow volume, was the most important factor contributing to P loss in tile drainage water, although event flow volume was more important in PP loss than in dissolved P loss. Continuous grass significantly increased P loss by increasing P concentration and flow volume of tile drainage water, especially under the fertilization treatment. Long-term grasslands may become a significant P source in tile-drained systems when they receive regular P addition. PMID:26023969

  12. Tile-Based Two-Dimensional Phase Unwrapping for Digital Holography Using a Modular Framework

    PubMed Central

    Antonopoulos, Georgios C.; Steltner, Benjamin; Heisterkamp, Alexander; Ripken, Tammo; Meyer, Heiko

    2015-01-01

    A variety of physical and biomedical imaging techniques, such as digital holography, interferometric synthetic aperture radar (InSAR), or magnetic resonance imaging (MRI) enable measurement of the phase of a physical quantity additionally to its amplitude. However, the phase can commonly only be measured modulo 2π, as a so called wrapped phase map. Phase unwrapping is the process of obtaining the underlying physical phase map from the wrapped phase. Tile-based phase unwrapping algorithms operate by first tessellating the phase map, then unwrapping individual tiles, and finally merging them to a continuous phase map. They can be implemented computationally efficiently and are robust to noise. However, they are prone to failure in the presence of phase residues or erroneous unwraps of single tiles. We tried to overcome these shortcomings by creating novel tile unwrapping and merging algorithms as well as creating a framework that allows to combine them in modular fashion. To increase the robustness of the tile unwrapping step, we implemented a model-based algorithm that makes efficient use of linear algebra to unwrap individual tiles. Furthermore, we adapted an established pixel-based unwrapping algorithm to create a quality guided tile merger. These original algorithms as well as previously existing ones were implemented in a modular phase unwrapping C++ framework. By examining different combinations of unwrapping and merging algorithms we compared our method to existing approaches. We could show that the appropriate choice of unwrapping and merging algorithms can significantly improve the unwrapped result in the presence of phase residues and noise. Beyond that, our modular framework allows for efficient design and test of new tile-based phase unwrapping algorithms. The software developed in this study is freely available. PMID:26599984

  13. Copy number analysis of the low-copy repeats at the primate NPHP1 locus by array comparative genomic hybridization.

    PubMed

    Yuan, Bo; Liu, Pengfei; Rogers, Jeffrey; Lupski, James R

    2016-06-01

    Array comparative genomic hybridization (aCGH) has been widely used to detect copy number variants (CNVs) in both research and clinical settings. A customizable aCGH platform may greatly facilitate copy number analyses in genomic regions with higher-order complexity, such as low-copy repeats (LCRs). Here we present the aCGH analyses focusing on the 45 kb LCRs [1] at the NPHP1 region with diverse copy numbers in humans. Also, the interspecies aCGH analysis comparing human and nonhuman primates revealed dynamic copy number transitions of the human 45 kb LCR orthologues during primate evolution and therefore shed light on the origin of complexity at this locus. The original aCGH data are available at GEO under GSE73962. PMID:27222811

  14. Biofilm formation on the surface of ceramic tiles.

    PubMed

    Sessa, R; Di Pietro, M; Zamparelli, M; Schiavoni, G; Del Piano, M

    2000-10-01

    The aim of the study was to investigate the formation of biofilm on the surface of ceramic tiles, widely present in public and private buildings, using six parallel flow chambers. Our flow system was conceived and made to compare biofilm results by parallel distributed rectangular tiles. The tiles, divided into two identical A and B sections, were placed within the flow chambers. Biofilm formation was performed after 72 h and was quantified by viable counts of bacteria. Average viable counts ranged from 1.1x10(7) to 7.3x10(7) cfu cm(-2) and from 1.1x10(7) to 5.8x10(7) cfu cm(-2) respectively for biofilm A and B sections. As statistical analysis does not show significant differences, we can conclude that biofilms obtained were so similar to each other that they confirmed the system reproducibility. Our next step will be to use our system to study Legionella pneumophila and to evaluate the efficacy of antibacterial agents.

  15. Tiling patterns from ABC star molecules: 3-colored foams?

    PubMed

    Kirkensgaard, Jacob J K; Pedersen, Martin C; Hyde, Stephen T

    2014-10-01

    We present coarse-grained simulations of the self-assembly of 3-armed ABC star polyphiles. In systems of star polyphiles with two arms of equal length the simulations corroborate and expand previous findings from related miktoarm star terpolymer systems on the formation of patterns containing columnar domains whose sections are 2D planar tilings. However, the systematic variation of face topologies as the length of the third (unequal) arm is varied differs from earlier findings regarding the compositional dependence. We explore 2D 3-colored foams to establish the optimal patterns based on interfacial energy alone. A generic construction algorithm is described that accounts for all observed 2D tiling patterns and suggests other patterns likely to be found beyond the range of the simulations reported here. Patterns resulting from this algorithm are relaxed using Surface Evolver calculations to form 2D foams with minimal interfacial length as a function of composition. This allows us to estimate the interfacial enthalpic contributions to the free energy of related star molecular assemblies assuming strong segregation. We compare the resulting phase sequence with a number of theoretical results from particle-based simulations and field theory, allowing us to tease out relative enthalpic and entropic contributions as a function of the chain lengths making up the star molecules. Our results indicate that a richer polymorphism is to be expected in systems not dominated by chain entropy. Further, analysis of corresponding planar tiling patterns suggests that related two-periodic columnar structures are unlikely hypothetical phases in 4-arm star polyphile melts in the absence of sufficient arm configurational freedom for minor domains to form lens-shaped di-gons, which require higher molecular weight polymeric arms. Finally, we discuss the possibility of forming a complex tiling pattern that is a quasi-crystalline approximant for 3-arm star polyphiles with unequal arm

  16. Comparative genomic hybridization array analysis and real-time PCR reveals genomic copy number alteration for lung adenocarcinomas.

    PubMed

    Choi, Jin Soo; Zheng, Long Tai; Ha, Eunyoung; Lim, Yun Jeong; Kim, Yeul Hong; Wang, Young-Pil; Lim, Young

    2006-01-01

    Genomic alterations in lung cancer tissues have been observed in various studies. To analyze the aberrations in the genome of lung cancer patients, we used array comparative genomic hybridization (array CGH) in 15 lung adenocarcinoma (AdC) tissues. Copy number gains and losses in chromosomal regions were detected and corresponding genes were confirmed by real-time polymerase chain reaction (PCR). As for the results, several frequently altered loci, including gain of 16p (46% of samples), were found, and the most common losses were found in 14q32.33 (26% of samples). High-level DNA amplifications (> 0.8 log(2) ratio) were detected at 1p, 5p, 7p, 9p, 11p, 11q, 12q, 14q, 16p, 17q, 19q, 20p, 21q, and 22q. A subset of genes, gained or lost, was checked for over- or underrepresentation by means of real-time PCR. The degree of fold change was highest in ECGF1 (22q13.33), HOXA9 (7p15.2), MAFG (17q25.3), TSC2 (16p13.3), and ICAM1 (19p13.2) genes and the 16p chromosome terminal region (16p13.3pter). Taken together, these results show that array CGH could be used as a powerful tool for identification of genomic alteration for lung cancer, and the above-mentioned genes may represent potential candidate genes in the study of lung cancer pathogenesis and diagnosis.

  17. Comparing the performance of analytical techniques for genetic PARENTAGE of half-sib progeny arrays.

    PubMed

    Croshaw, Dean A; Peters, Maureen B; Glenn, Travis C

    2009-10-01

    The prevalence of female multiple mating in natural populations is important for many questions in mating system evolution. Several statistical techniques use genetic data to estimate the number of fathers that contribute gametes to broods, but they have not been widely compared to assess the magnitude of differences in their performance. With a combination of new data and reanalysis of previously published data, we compared five analytical approaches: (1) allele-counting, (2) parental reconstruction in GERUD, (3) a Bayesian probability model to estimate the frequency of multiple mating (FMM), (4) computer simulations based on population allele frequencies in HAPLOTYPES and (5) Bayesian parental reconstruction in PARENTAGE. The results show that choice of analysis technique can significantly affect estimates of sire number. Estimates from GERUD conformed exactly to results obtained from strict exclusion of potential sires in an experimental context. However, estimates yielded by HAPLOTYPES and PARENTAGE sometimes exceeded the numbers from GERUD by as much as 120 and 55%, respectively. We recommend GERUD over these other approaches for most purposes because of its accuracy and consistency in this analysis. Our novel genetic data set allowed us to investigate the extent and frequency of multiple paternity in a marbled salamander (Ambystoma opacum) population in South Carolina, USA. A. opacum contrasted with other salamander species by having relatively low levels of multiple paternity (only 31-54% compared with 71-96%). Although A. opacum had the lowest level of multiple paternity under all analytical approaches used here, the magnitude of differences among species varied. PMID:19922695

  18. Frequent deletion of the CDKN2A locus in chordoma: analysis of chromosomal imbalances using array comparative genomic hybridisation

    PubMed Central

    Hallor, K H; Staaf, J; Jönsson, G; Heidenblad, M; Vult von Steyern, F; Bauer, H C F; IJszenga, M; Hogendoorn, P C W; Mandahl, N; Szuhai, K; Mertens, F

    2007-01-01

    The initiating somatic genetic events in chordoma development have not yet been identified. Most cytogenetically investigated chordomas have displayed near-diploid or moderately hypodiploid karyotypes, with several numerical and structural rearrangements. However, no consistent structural chromosome aberration has been reported. This is the first array-based study characterising DNA copy number changes in chordoma. Array comparative genomic hybridisation (aCGH) identified copy number alterations in all samples and imbalances affecting 5 or more out of the 21 investigated tumours were seen on all chromosomes. In general, deletions were more common than gains and no high-level amplification was found, supporting previous findings of primarily losses of large chromosomal regions as an important mechanism in chordoma development. Although small imbalances were commonly found, the vast majority of these were detected in single cases; no small deletion affecting all tumours could be discerned. However, the CDKN2A and CDKN2B loci in 9p21 were homo- or heterozygously lost in 70% of the tumours, a finding corroborated by fluorescence in situ hybridisation, suggesting that inactivation of these genes constitute an important step in chordoma development. PMID:18071362

  19. Tile drainage as karst: Conduit flow and diffuse flow in a tile-drained watershed

    USGS Publications Warehouse

    Schilling, K.E.; Helmers, M.

    2008-01-01

    The similarity of tiled-drained watersheds to karst drainage basins can be used to improve understanding of watershed-scale nutrient losses from subsurface tile drainage networks. In this study, short-term variations in discharge and chemistry were examined from a tile outlet collecting subsurface tile flow from a 963 ha agricultural watershed. Study objectives were to apply analytical techniques from karst springs to tile discharge to evaluate water sources and estimate the loads of agricultural pollutants discharged from the tile with conduit, intermediate and diffuse flow regimes. A two-member mixing model using nitrate, chloride and specific conductance was used to distinguish rainwater versus groundwater inputs. Results indicated that groundwater comprised 75% of the discharge for a three-day storm period and rainwater was primarily concentrated during the hydrograph peak. A contrasting pattern of solute concentrations and export loads was observed in tile flow. During base flow periods, tile flow consisted of diffuse flow from groundwater sources and contained elevated levels of nitrate, chloride and specific conductance. During storm events, suspended solids and pollutants adhered to soil surfaces (phosphorus, ammonium and organic nitrogen) were concentrated and discharged during the rapid, conduit flow portion of the hydrograph. During a three-day period, conduit flow occurred for 5.6% of the time but accounted for 16.5% of the total flow. Nitrate and chloride were delivered primarily with diffuse flow (more than 70%), whereas 80-94% of total suspended sediment, phosphorus and ammonium were exported with conduit and intermediate flow regimes. Understanding the water sources contributing to tile drainage and the manner by which pollutant discharge occurs from these systems (conduit, intermediate or diffuse flow) may be useful for designing, implementing and evaluating non-point source reduction strategies in tile-drained landscapes. ?? 2007 Elsevier B.V. All

  20. Symmetry groups associated with tilings on a flat torus.

    PubMed

    Loyola, Mark L; De Las Peñas, Ma Louise Antonette N; Estrada, Grace M; Santoso, Eko Budi

    2015-01-01

    This work investigates symmetry and color symmetry properties of Kepler, Heesch and Laves tilings embedded on a flat torus and their geometric realizations as tilings on a round torus in Euclidean 3-space. The symmetry group of the tiling on the round torus is determined by analyzing relevant symmetries of the planar tiling that are transformed to axial symmetries of the three-dimensional tiling. The focus on studying tilings on a round torus is motivated by applications in the geometric modeling of nanotori and the determination of their symmetry groups.

  1. Approximation of virus structure by icosahedral tilings.

    PubMed

    Salthouse, D G; Indelicato, G; Cermelli, P; Keef, T; Twarock, R

    2015-07-01

    Viruses are remarkable examples of order at the nanoscale, exhibiting protein containers that in the vast majority of cases are organized with icosahedral symmetry. Janner used lattice theory to provide blueprints for the organization of material in viruses. An alternative approach is provided here in terms of icosahedral tilings, motivated by the fact that icosahedral symmetry is non-crystallographic in three dimensions. In particular, a numerical procedure is developed to approximate the capsid of icosahedral viruses by icosahedral tiles via projection of high-dimensional tiles based on the cut-and-project scheme for the construction of three-dimensional quasicrystals. The goodness of fit of our approximation is assessed using techniques related to the theory of polygonal approximation of curves. The approach is applied to a number of viral capsids and it is shown that detailed features of the capsid surface can indeed be satisfactorily described by icosahedral tilings. This work complements previous studies in which the geometry of the capsid is described by point sets generated as orbits of extensions of the icosahedral group, as such point sets are by construction related to the vertex sets of icosahedral tilings. The approximations of virus geometry derived here can serve as coarse-grained models of viral capsids as a basis for the study of virus assembly and structural transitions of viral capsids, and also provide a new perspective on the design of protein containers for nanotechnology applications. PMID:26131897

  2. Structural testing of hollow clay tile units

    SciTech Connect

    Flanagan, R.D. ); Bennett, R.M. . Dept. of Civil Engineering)

    1992-08-05

    This report presents the results of laboratory testing of hollow clay tile masonry units. The testing is part of an ongoing natural phenomena evaluation program of Hollow Clay Tile Wall (HCTW) facilities at the Oak Ridge Y-12 Plant. The primary purpose of these tests is to determine structural properties of unit tiles of the same lot to be used in large-scale laboratory testing of HCTW structures. Light red (terra cotta) clay masonry units, taken from the construction supply yard of were sampled and tested in accordance with applicable ASTM standards. Measurement of size, measurement of void area, initial rate of absorption, compressive strength, and splitting tensile strength procedures were performed. Evaluation of the test results along with comparison to other published clay tile data is provided. Volume 1 of this document contains a description of the testing, a summary of the results, comparison to other published clay tile data, and conclusion drawn from the results. Volume 2 contains the unreduced test data, data reduction software, and quality assurance aspects of the testing.

  3. Tiled WMS/KML Server V2

    NASA Technical Reports Server (NTRS)

    Plesea, Lucian

    2012-01-01

    This software is a higher-performance implementation of tiled WMS, with integral support for KML and time-varying data. This software is compliant with the Open Geospatial WMS standard, and supports KML natively as a WMS return type, including support for the time attribute. Regionated KML wrappers are generated that match the existing tiled WMS dataset. Ping and JPG formats are supported, and the software is implemented as an Apache 2.0 module that supports a threading execution model that is capable of supporting very high request rates. The module intercepts and responds to WMS requests that match certain patterns and returns the existing tiles. If a KML format that matches an existing pyramid and tile dataset is requested, regionated KML is generated and returned to the requesting application. In addition, KML requests that do not match the existing tile datasets generate a KML response that includes the corresponding JPG WMS request, effectively adding KML support to a backing WMS server.

  4. Texture and color features for tile classification

    NASA Astrophysics Data System (ADS)

    Baldrich, Ramon; Vanrell, Maria; Villanueva, Juan J.

    1999-09-01

    In this paper we present the results of a preliminary computer vision system to classify the production of a ceramic tile industry. We focus on the classification of a specific type of tiles whose production can be affected by external factors, such as humidity, temperature, origin of clays and pigments. Variations on these uncontrolled factors provoke small differences in the color and the texture of the tiles that force to classify all the production. A constant and non- subjective classification would allow avoiding devolution from customers and unnecessary stock fragmentation. The aim of this work is to simulate the human behavior on this classification task by extracting a set of features from tile images. These features are induced by definitions from experts. To compute them we need to mix color and texture information and to define global and local measures. In this work, we do not seek a general texture-color representation, we only deal with textures formed by non-oriented colored-blobs randomly distributed. New samples are classified using Discriminant Analysis functions derived from known class tile samples. The last part of the paper is devoted to explain the correction of acquired images in order to avoid time and geometry illumination changes.

  5. Real time implementation of distortion corrections for a tiled EMCCD-based solid state x-ray image intensifier (SSXII)

    NASA Astrophysics Data System (ADS)

    Keleshis, Christos; Hoffmann, K. R.; Lee, J.; Hamwi, H.; Wang, W.; Ionita, C. N.; Bednarek, D. R.; Verevkin, A.; Rudin, S.

    2009-02-01

    The new Solid State X-ray Image Intensifier (SSXII) is being designed based on a modular imaging array of Electron Multiplying Charge Couple Devices (EMCCD). Each of the detector modules consists of a CsI(Tl) phosphor coupled to a fiber-optic plate, a fiber-optic taper (FOT), and an EMCCD sensor with its electronics. During the optical coupling and alignment of the modules into an array form, small orientation misalignments, such as rotation and translation of the EMCCD sensors, are expected. In addition, barrel distortion will result from the FOTs. Correction algorithms have been developed by our group for all the above artifacts. However, it is critical for the system's performance to correct these artifacts in real-time (30 fps). To achieve this, we will use two-dimensional Look-Up-Tables (LUT) (each for x and y coordinates), which map the corrected pixel locations to the acquired-image pixel locations. To evaluate the feasibility of this approach, this process is simulated making use of parallel coding techniques to allow real-time distortion corrections for up to sixteen modules when a standard quad processor is used. The results of this simulation confirm that tiled field-of-views (FOV) comparable with those of flat panel detectors can be generated in ~17 ms (>30 fps). The increased FOV enabled through correction of tiled images, combined with the EMCCD characteristics of low noise, negligible lag and high sensitivity, should make possible the practical use of the SSXII with substantial advantages over conventional clinical systems. (Support: NIH Grants R01EB008425, R01NS43924, R01EB002873)

  6. Array comparative genomic hybridization reveals frequent alterations of G1/S checkpoint genes in undifferentiated pleomorphic sarcoma of bone.

    PubMed

    Niini, Tarja; Lahti, Leo; Michelacci, Francesca; Ninomiya, Shinsuke; Hattinger, Claudia Maria; Guled, Mohamed; Böhling, Tom; Picci, Piero; Serra, Massimo; Knuutila, Sakari

    2011-05-01

    Undifferentiated pleomorphic sarcoma of bone (UPSb) is a rare tumor often difficult to differentiate from fibrosarcoma of bone (FSb), diagnostically. We applied array comparative genomic hybridization (array CGH) to screen for genes with potential importance in the tumor and compared the results with alterations seen in FSb. Twenty-two fresh frozen tissue specimens from 20 patients (18 primary tumors and 4 local recurrences) with UPSb were studied. DNA was isolated and hybridized onto Agilent 244K CGH oligoarrays. The hybridization data were analyzed using Agilent DNA Analytics Software. The number of changes ranged from 2 to 168 (average = 66). Losses were most frequently seen at 8p, 9p, 10, 13q, and 18q, and gains at 4q, 5p, 6p, 7p, 8q, 12p, 14q, 17q, 19p, 20q, 22q, and X. Homozygous deletions of CDKN2A, RB1, TP53, and ING1 were seen in 8/20, 7/20, 3/20, and 2/20 cases, respectively. Hypermethylation of both p16(INK4a) and p14(ARF) was found in two cases with loss at CDKN2A. Inactivation either of CDKN2A, RB1, or TP53 was detected in 18/20 cases. One case showed high level gains of CDK4 and MDM2. Frequent gains were seen at MYC, PDGFRA, KIT, and KDR. Immunohistochemical positivity of KIT, PDGFRA, KDR, and PDGFRB was found in 8/14, 5/14, 4/14, and 4/14 cases, respectively. The regions most significantly discriminating between UPSb and FSb included RB1 and MYC. No homozygous deletions of RB1 were found in FSb. In conclusion, our analysis showed the disruption of G1/S checkpoint regulation to be crucial for the oncogenesis of UPSb.

  7. High-resolution array comparative genomic hybridization of chromosome 8q: evaluation of putative progression markers for gastroesophageal junction adenocarcinomas.

    PubMed

    van Duin, M; van Marion, R; Vissers, K J; Hop, W C J; Dinjens, W N M; Tilanus, H W; Siersema, P D; van Dekken, H

    2007-01-01

    Amplification of 8q is frequently found in gastroesophageal junction (GEJ) cancer. It is usually detected in high-grade, high-stage GEJ adenocarcinomas. Moreover, it has been implicated in tumor progression in other cancer types. In this study, a detailed genomic analysis of 8q was performed on a series of GEJ adenocarcinomas, including 22 primary adenocarcinomas, 13 cell lines and two xenografts, by array comparative genomic hybridization (aCGH) with a whole chromosome 8q contig array. Of the 37 specimens, 21 originated from the esophagus and 16 were derived from the gastric cardia. Commonly overrepresented regions were identified at distal 8q, i.e. 124-125 Mb (8q24.13), at 127-128 Mb (8q24.21), and at 141-142 Mb (8q24.3). From these regions six genes were selected with putative relevance to cancer: ANXA13, MTSS1, FAM84B (alias NSE2), MYC, C8orf17 (alias MOST-1) and PTK2 (alias FAK). In addition, the gene EXT1 was selected since it was found in a specific amplification in cell line SK-GT-5. Quantitative RT-PCR analysis of these seven genes was subsequently performed on a panel of 24 gastroesophageal samples, including 13 cell lines, two xenografts and nine normal stomach controls. Significant overexpression was found for MYC and EXT1 in GEJ adenocarcinoma cell lines and xenografts compared to normal controls. Expression of the genes MTSS1, FAM84B and C8orf17 was found to be significantly decreased in this set of cell lines and xenografts. We conclude that, firstly, there are other genes than MYC involved in the 8q amplification in GEJ cancer. Secondly, the differential expression of these genes contributes to unravel the biology of GEJ adenocarcinomas.

  8. Remotely replaceable tokamak plasma limiter tiles

    DOEpatents

    Tsuo, Simon , Langford, Alison A.

    1989-01-01

    U-shaped limiter tiles placed end-to-end over a pair of parallel runners secured to a wall have two rods which engage L-shaped slots in the runners. The short receiving legs of the L-shaped slots are perpendicular to the wall and open away from the wall, while long retaining legs are parallel to and adjacent the wall. A sliding bar between the runners has grooves with clips to retain the rods pressed into receiving legs of the L-shaped slots in the runners. Sliding the bar in the direction of retaining legs of the L-shaped slots latches the tiles in place over the runners. Resilient contact strips between the parallel arms of the U-shaped tiles and the wall assure thermal and electrical contact with the wall.

  9. Crosslinking in viral capsids via tiling theory.

    PubMed

    Twarock, R; Hendrix, R W

    2006-06-01

    A vital part of a virus is its protein shell, called the viral capsid, that encapsulates and hence protects the viral genome. It has been shown in Twarock [2004. A tiling approach to vius capsids assembly explaining a structural puzzle in virology. J. Theor. Biol. 226, 477-482] that the surface structures of viruses with icosahedrally symmetric capsids can be modelled in terms of tilings that encode the locations of the protein subunits. This theory is extended here to multi-level tilings in order to model crosslinking structures. The new framework is demonstrated for the case of bacteriophage HK97, and it is shown, how the theory can be used in general to decide if crosslinking, and what type of crosslinking, is compatible from a mathematical point of view with the geometrical surface structure of a virus.

  10. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION... Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor tile subcategory... manufacture of asbestos floor tile....

  11. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION... Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor tile subcategory... manufacture of asbestos floor tile....

  12. Comparing passive source localization and tracking approaches with a towed horizontal receiver array in an ocean waveguide.

    PubMed

    Gong, Zheng; Tran, Duong D; Ratilal, Purnima

    2013-11-01

    Approaches for instantaneous passive source localization using a towed horizontal receiver array in a random range-dependent ocean waveguide are examined. They include: (1) Moving array triangulation, (2) array invariant, (3) bearings-only target motion analysis in modified polar coordinates via the extended Kalman filter, and (4) bearings-migration minimum mean-square error. These methods are applied to localize and track a vertical source array deployed in the far-field of a towed horizontal receiver array during the Gulf of Maine 2006 Experiment. The source transmitted intermittent broadband pulses in the 300 to 1200 Hz frequency range. A nonlinear matched-filter kernel designed to replicate the acoustic signal measured by the receiver array is applied to enhance the signal-to-noise ratio. The source localization accuracy is found to be highly dependent on source-receiver geometry and the localization approach. For a relatively stationary source drifting at speeds much slower than the receiver array tow-speed, the mean source position can be estimated by moving array triangulation with less than 3% error near broadside direction. For a moving source, the Kalman filter method gives the best performance with 5.5% error. The array invariant is the best approach for localizing sources within the endfire beam of the receiver array with 7% error.

  13. Recycling of Malaysia's electric arc furnace (EAF) slag waste into heavy-duty green ceramic tile.

    PubMed

    Teo, Pao-Ter; Anasyida, Abu Seman; Basu, Projjal; Nurulakmal, Mohd Sharif

    2014-12-01

    flexural strength, lowest apparent porosity and water absorption of EAF slag based tile was attained at the composition of 40 wt.% EAF slag--30 wt.% ball clay--10 wt.% feldspar--20 wt.% silica. The properties of ceramic tile made with EAF slag waste (up to 40 wt.%), especially flexural strength are comparable to those of commercial ceramic tile and are, therefore, suitable as high flexural strength and heavy-duty green ceramic floor tile. Continuous development is currently underway to improve the properties of tile so that this recycling approach could be one of the potential effective, efficient and sustainable solutions in sustaining our nature.

  14. Recycling of Malaysia's electric arc furnace (EAF) slag waste into heavy-duty green ceramic tile.

    PubMed

    Teo, Pao-Ter; Anasyida, Abu Seman; Basu, Projjal; Nurulakmal, Mohd Sharif

    2014-12-01

    flexural strength, lowest apparent porosity and water absorption of EAF slag based tile was attained at the composition of 40 wt.% EAF slag--30 wt.% ball clay--10 wt.% feldspar--20 wt.% silica. The properties of ceramic tile made with EAF slag waste (up to 40 wt.%), especially flexural strength are comparable to those of commercial ceramic tile and are, therefore, suitable as high flexural strength and heavy-duty green ceramic floor tile. Continuous development is currently underway to improve the properties of tile so that this recycling approach could be one of the potential effective, efficient and sustainable solutions in sustaining our nature. PMID:25242607

  15. Testing of clay tile infilled frames

    SciTech Connect

    Flanagan, R.D.; Bennett, R.M.; Burdette, E.G.; Goodpasture, D.W.

    1992-08-21

    Several large-scale static tests of clay tile infilled frames were recently conducted. For in-plane racking tests, the effects of cyclic loading, varying frame stiffness, varying infill size, infill offset from frame centerline, and single and double wythe infill construction were investigated. Out-of-plane tests examined infilled frame response to inertial loadings and inter-story drift loadings. Multiple loadings were performed to determine in-plane strength and stiffness degradation from both out-of-plane loadings. To determine constitutive properties of the infills, prism compression, mortar compression and various unit tile tests were performed.

  16. Dynamical implications of Viral Tiling Theory.

    PubMed

    ElSawy, K M; Taormina, A; Twarock, R; Vaughan, L

    2008-05-21

    The Caspar-Klug classification of viruses whose protein shell, called viral capsid, exhibits icosahedral symmetry, has recently been extended to incorporate viruses whose capsid proteins are exclusively organised in pentamers. The approach, named 'Viral Tiling Theory', is inspired by the theory of quasicrystals, where aperiodic Penrose tilings enjoy 5-fold and 10-fold local symmetries. This paper analyses the extent to which this classification approach informs dynamical properties of the viral capsids, in particular the pattern of Raman active modes of vibrations, which can be observed experimentally. PMID:18353372

  17. 2. MORAVIAN POTTERY AND TILE WORKS, VIEW FROM THE SOUTHWEST. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    2. MORAVIAN POTTERY AND TILE WORKS, VIEW FROM THE SOUTHWEST. INDIAN HOUSE WING AT THE LEFT. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  18. INTERIOR VIEW OF BATHROOM 1 SHOWING THE MOSAICPATTERN TILE FLOOR. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    INTERIOR VIEW OF BATHROOM 1 SHOWING THE MOSAIC-PATTERN TILE FLOOR. CERAMIC TILE WAINSCOT, AND CERAMIC ACCESSORIES. VIEW FACING NORTH. - Hickam Field, Officers' Housing Type H, 208 Sixth Street, Honolulu, Honolulu County, HI

  19. INTERIOR VIEW OF BATHROOM 1. SHOWING ORIGINAL MOSAIC PATTERN TILE ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    INTERIOR VIEW OF BATHROOM 1. SHOWING ORIGINAL MOSAIC PATTERN TILE FLOOR, TILE WAINSCOT AND SHOWER SURROUND, AND CERAMIC ACCESSORIES. VIEW FACING EAST. - Hickam Field, Officers' Housing Type J, 701 Beard Street, Honolulu, Honolulu County, HI

  20. Array-based comparative genomic hybridization for the detection of DNA sequence copy number changes in Barrett's adenocarcinoma.

    PubMed

    Albrecht, Bettina; Hausmann, Michael; Zitzelsberger, Horst; Stein, Hubert; Siewert, Jörg Rüdiger; Hopt, Ulrich; Langer, Rupert; Höfler, Heinz; Werner, Martin; Walch, Axel

    2004-07-01

    Array-based comparative genomic hybridization (aCGH) allows the identification of DNA sequence copy number changes at high resolution by co-hybridizing differentially labelled test and control DNAs to a micro-array of genomic clones. The present study has analysed a series of 23 formalin-fixed, paraffin wax-embedded tissue samples of Barrett's adenocarcinoma (BCA, n = 18) and non-neoplastic squamous oesophageal (n = 2) and gastric cardia mucosa (n = 3) by aCGH. The micro-arrays used contained 287 genomic targets covering oncogenes, tumour suppressor genes, and DNA sequences localized within chromosomal regions previously reported to be altered in BCA. DNA sequence copy number changes for a panel of approximately 50 genes were identified, most of which have not been previously described in BCA. DNA sequence copy number gains (mean 41 +/- 25/BCA) were more frequent than DNA sequence copy number losses (mean 20 +/- 15/BCA). The highest frequencies for DNA sequence copy number gains were detected for SNRPN (61%); GNLY (44%); NME1 (44%); DDX15, ABCB1 (MDR), ATM, LAMA3, MYBL2, ZNF217, and TNFRSF6B (39% each); and MSH2, TERC, SERPINE1, AFM137XA11, IGF1R, and PTPN1 (33% each). DNA sequence copy number losses were identified for PDGFB (44%); D17S125 (39%); AKT3 (28%); and RASSFI, FHIT, CDKN2A (p16), and SAS (CDK4) (28% each). In all non-neoplastic tissue samples of squamous oesophageal and gastric cardia mucosa, the measured mean ratios were 1.00 (squamous oesophageal mucosa) or 1.01 (gastric mucosa), indicating that no DNA sequence copy number chances were present. For validation, the DNA sequence copy number changes of selected clones (SNRPN, CMYC, HER2, ZNF217) detected by aCGH were confirmed by fluorescence in situ hybridization (FISH). These data show the sensitivity of aCGH for the identification of DNA sequence copy number changes at high resolution in BCA. The newly identified genes may include so far unknown biomarkers in BCA and are therefore a starting point for

  1. Thermal-Structural Analysis of PICA Tiles for Solar Tower Test

    NASA Technical Reports Server (NTRS)

    Agrawal, Parul; Empey, Daniel M.; Squire, Thomas H.

    2009-01-01

    Thermal protection materials used in spacecraft heatshields are subjected to severe thermal and mechanical loading environments during re-entry into earth atmosphere. In order to investigate the reliability of PICA tiles in the presence of high thermal gradients as well as mechanical loads, the authors designed and conducted solar-tower tests. This paper presents the design and analysis work for this tests series. Coupled non-linear thermal-mechanical finite element analyses was conducted to estimate in-depth temperature distribution and stress contours for various cases. The first set of analyses performed on isolated PICA tile showed that stresses generated during the tests were below the PICA allowable limit and should not lead to any catastrophic failure during the test. The tests results were consistent with analytical predictions. The temperature distribution and magnitude of the measured strains were also consistent with predicted values. The second test series is designed to test the arrayed PICA tiles with various gap-filler materials. A nonlinear contact method is used to model the complex geometry with various tiles. The analyses for these coupons predict the stress contours in PICA and inside gap fillers. Suitable mechanical loads for this architecture will be predicted, which can be applied during the test to exceed the allowable limits and demonstrate failure modes. Thermocouple and strain-gauge data obtained from the solar tower tests will be used for subsequent analyses and validation of FEM models.

  2. Development of a nondestructive vibration technique for bond assessment of Space Shuttle tiles

    NASA Technical Reports Server (NTRS)

    Moslehy, Faissal A.

    1994-01-01

    This final report describes the achievements of the above titled project. The project is funded by NASA-KSC (Grant No. NAG 10-0117) for the period of 1 Jan. to 31 Dec. 1993. The purpose of this project was to develop a nondestructive, noncontact technique based on 'vibration signature' of tile systems to quantify the bond conditions of the thermal protection system) tiles of Space Shuttle orbiters. The technique uses a laser rapid scan system, modal measurements, and finite element modeling. Finite element models were developed for tiles bonded to both clamped and deformable integrated skin-stringer orbiter mid-fuselage. Results showed that the size and location of a disbonded tile can be determined from frequency and mode shape information. Moreover, a frequency response survey was used to quickly identify the disbonded tiles. The finite element results were compared with experimentally determined frequency responses of a 17-tile test panel, where a rapidscan laser system was employed. An excellent degree of correlation between the mathematical simulation and experimental results was realized. An inverse solution for single-tile assemblies was also derived and is being implemented into a computer program that can interact with the modal testing software. The output of the program displays the size and location of disbond. This program has been tested with simulated input (i.e., finite element data), and excellent agreement between predicted and simulated disbonds was shown. Finally, laser vibration imaging and acoustic emission techniques were shown to be well suited for detecting and monitoring the progressive damage in Graphite/Epoxy composite materials.

  3. Production and characterization of glazed tiles containing incinerated sewage sludge.

    PubMed

    Lin, D F; Chang, W C; Yuan, C; Luo, H L

    2008-01-01

    In this article, glaze with different colorants was applied to tile specimens manufactured by incinerated sewage sludge ash (ISSA) and clay. Improvements using different amounts of colorants, and glaze components and concentrations on tile bodies were investigated. Four different proportions of clay (by weight ratio) were replaced by ISSA. Tiles of size 12 cm x 6 cm x 1 cm were made and left in an electric furnace to make biscuit tiles at 800 degrees C. Afterwards, four colorants, Fe2O3 (red), V2O5 (yellow), CoCO3 (blue), and MnO2 (purple), and four different glaze concentrations were applied on biscuit tile specimens. These specimens were later sintered into glazed tiles at 1050 degrees C. The study shows that replacement of clay by sludge ash had adverse effects on properties of tiles. Water absorption increased and bending strength reduced with increased amounts of ash. However, both water absorption and bending strength improved for glazed ash tiles. Abrasion of grazed tiles reduced noticeably from 0.001 to 0.002 g. This implies glaze can enhance abrasion resistance of tiles. Effects like lightfastness and acid-alkali resistance improved as different glazes were applied on tiles. In general, red glazed tiles showed the most stable performance, followed by blue, yellow, and purple.

  4. Two Views of Islam: Ceramic Tile Design and Miniatures.

    ERIC Educational Resources Information Center

    Macaulay, Sara Grove

    2001-01-01

    Describes an art project focusing on Islamic art that consists of two parts: (1) ceramic tile design; and (2) Islamic miniatures. Provides background information on Islamic art and step-by-step instructions for designing the Islamic tile and miniature. Includes learning objectives and resources on Islamic tile miniatures. (CMK)

  5. 90. TILES OF THE NEW WORLD PANEL, NORTH WALL OF ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    90. TILES OF THE NEW WORLD PANEL, NORTH WALL OF THE INDIAN HOUSE. THE RELIEF BROCADE TILES ILLUSTRATE SCENES OF NATIVE AMERICAN HISTORY AND CULTURE, AND THE EARLY EUROPEAN EXPLORATION OF THE NEW WORLD. SAME VIEW AS PA-107-21. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  6. 21. TILES OF THE NEW WORLD PANEL, NORTH WALL OF ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    21. TILES OF THE NEW WORLD PANEL, NORTH WALL OF THE INDIAN HOUSE. THE RELIEF BROCADE TILES ILLUSTRATE SCENES OF NATIVE AMERICAN HISTORY AND CULTURE, AND THE EARLY EUROPEAN EXPLORATION OF THE NEW WORLD. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  7. Improving Emittance of High-Temperature Insulating Tile

    NASA Technical Reports Server (NTRS)

    Gzowski, E. R.

    1985-01-01

    Simple addition to ceramic insulating tiles provides backup properties that minimize transfer of heat through tiles when their surfaces become damaged. Addition of 3 percent by weight of 320- or 600-grit silicon carbide powder to ceramic during production results in impregnated tile material that resists overheating. Silicon carbide increases emittance and decreases transmittance of ceramic.

  8. Installation of Ceramic Tile: Residential Thin-Set Methods.

    ERIC Educational Resources Information Center

    Short, Sam

    This curriculum guide contains materials for use in teaching a course on residential thin-set methods of tile installation. Covered in the individual units are the following topics: the tile industry; basic math; tools; measurement; safety in tile setting; installation materials and guidelines for their use; floors; counter tops and backsplashes;…

  9. Comparative particle recoveries by the retracting rotorod, rotoslide and Burkard spore trap sampling in a compact array

    NASA Astrophysics Data System (ADS)

    Solomon, W. R.; Burge, H. A.; Boise, J. R.; Becker, M.

    1980-06-01

    An array comprising 4 intermittent (retracting) rotorods, 3 (“swingshield”) rotoslides and one Burkard (Hirst) automatic volumetric spore trap was operated on an urban rooftop during 70 periods of 9, 15 or 24 hours in late summer. Standard sampling procedures were utilized and recoveries of pollens as well as spores of Alternaria, Epicoccum, Pithomyces and Ganoderma species compared. Differences between paired counts from each sampler type showed variances increasing with levels of particle prevalence (and deposition). In addition, minimal, non-random, side-to-side and intersampler differences were noted for both impactor types. Exclusion of particles between operating intervals by rotoslides and rotorods was virtually complete. Spore trap recoveries for all particle categories, per m3, exceeded those by both impactors. The greatest (7-fold) difference was noted for the smallest type examined ( Ganoderma). For ragweed pollen, an overall spore trap/impactor ratio approached 1.5. Rain effects were difficult to discern but seemed to influence rotoslides least. Overall differences between impactors were quite small but generally favored the rotoslide in this comparison. Our data confirm the relative advantages of suction traps for small particles. Both impactors and spore traps are suited to pollen and large spore collection, and, with some qualification, data from both may be compared.

  10. CFD-Predicted Tile Heating Bump Factors Due to Tile Overlay Repairs

    NASA Technical Reports Server (NTRS)

    Lessard, Victor R.

    2006-01-01

    A Computational Fluid Dynamics investigation of the Orbiter's Tile Overlay Repair (TOR) is performed to assess the aeroheating Damage Assessment Team's (DAT) existing heating correlation method for protuberance interference heating on the surrounding thermal protection system. Aerothermodynamic heating analyses are performed for TORs at the design reference damage locations body points 1800 and 1075 for a Mach 17.9 and a=39deg STS-107 flight trajectory point with laminar flow. Six different cases are considered. The computed peak heating bump factor on the surrounding tiles are below the DAT's heating bump factor values for smooth tile cases. However, for the uneven tiles cases the peak interference heating is shown to be considerably higher than the existing correlation prediction.

  11. Jagged Tiling for Intra-tile Parallelism and Fine-Grain Multithreading

    SciTech Connect

    Shrestha, Sunil; Manzano Franco, Joseph B.; Marquez, Andres; Feo, John T.; Gao, Guang R.

    2015-05-01

    In this paper, we have developed a novel methodology that takes into consideration multithreaded many-core designs to better utilize memory/processing resources and improve memory residence on tileable applications. It takes advantage of polyhedral analysis and transformation in the form of PLUTO, combined with a highly optimized finegrain tile runtime to exploit parallelism at all levels. The main contributions of this paper include the introduction of multi-hierarchical tiling techniques that increases intra tile parallelism; and a data-flow inspired runtime library that allows the expression of parallel tiles with an efficient synchronization registry. Our current implementation shows performance improvements on an Intel Xeon Phi board up to 32.25% against instances produced by state-of-the-art compiler frameworks for selected stencil applications.

  12. Hollow clay tile wall program summary report

    SciTech Connect

    Henderson, R.C.; Jones, W.D.

    1995-07-30

    Many of the Y-12 Plant buildings, constructed during the 1940s and 1950s, consist of steel ed concrete framing infilled with hollow clay tile (HCT). The infill was intended to provide for building enclosure and was not designed to have vertical or lateral load-carrying capacity. During the late 1970s and early 1980s, seismic and wind evaluations were performed on many of these buildings in conjunction with the preparation of a site-wide safety analysis report. This analytical work, based on the best available methodology, considered lateral load-carrying capacity of the HCT infill on the basis of building code allowable shear values. In parallel with the analysis effort, DOE initiated a program to develop natural phenomena capacity and performance criteria for existing buildings, but these criteria did not specify guidelines for determining the lateral force capacity of frames infilled with HCT. The evaluation of infills was, therefore, based on the provisions for the design of unreinforced masonry as outlined in standard masonry codes. When the results of the seismic and wind evaluations were compared with the new criteria, the projected building capacities fell short of the requirements. Apparently, if the buildings were to meet the new criteria, many millions of dollars would be required for building upgrades. Because the upgrade costs were significant, the assumptions and approaches used in the analyses were reevaluated. Four issues were identified: (1) Once the infilled walls cracked, what capacity (nonlinear response), if any, would the walls have to resist earthquake or wind loads applied in the plane of the infill (in-plane)? (2) Would the infilled walls remain within the steel or reinforced concrete framing when subjected to earthquake or high wind loads applied perpendicular to the infill (out-of-plane)? (3) What was the actual shear capacity of the HCT infill? (4) Was modeling the HCT infill as a shear wall the best approach?

  13. Lozenge Tilings, Glauber Dynamics and Macroscopic Shape

    NASA Astrophysics Data System (ADS)

    Laslier, Benoît; Toninelli, Fabio Lucio

    2015-09-01

    We study the Glauber dynamics on the set of tilings of a finite domain of the plane with lozenges of side 1/ L. Under the invariant measure of the process (the uniform measure over all tilings), it is well known (Cohn et al. J Am Math Soc 14:297-346, 2001) that the random height function associated to the tiling converges in probability, in the scaling limit , to a non-trivial macroscopic shape minimizing a certain surface tension functional. According to the boundary conditions, the macroscopic shape can be either analytic or contain "frozen regions" (Arctic Circle phenomenon Cohn et al. N Y J Math 4:137-165, 1998; Jockusch et al. Random domino tilings and the arctic circle theorem, arXiv:math/9801068, 1998). It is widely conjectured, on the basis of theoretical considerations (Henley J Statist Phys 89:483-507, 1997; Spohn J Stat Phys 71:1081-1132, 1993), partial mathematical results (Caputo et al. Commun Math Phys 311:157-189, 2012; Wilson Ann Appl Probab 14:274-325, 2004) and numerical simulations for similar models (Destainville Phys Rev Lett 88:030601, 2002; cf. also the bibliography in Henley (J Statist Phys 89:483-507, 1997) and Wilson (Ann Appl Probab 14:274-325, 2004), that the Glauber dynamics approaches the equilibrium macroscopic shape in a time of order L 2+ o(1). In this work we prove this conjecture, under the assumption that the macroscopic equilibrium shape contains no "frozen region".

  14. L-Tromino Tiling of Multilated Chessboards

    ERIC Educational Resources Information Center

    Gardner, Martin

    2009-01-01

    An "n" x "n" chessboard is called deficient if one square is missing from any spot on the board. Can all deficient boards with a number of cells divisible by 3 be tiled by bent (or L-shaped) trominoes? The answer is yes, with exception of the order-5 board. This paper deals with the general problem plus numerous related puzzles and proofs…

  15. High Temperature Filler for Tile Gaps

    NASA Technical Reports Server (NTRS)

    Holt, J. W.; Wang, D. S.

    1983-01-01

    Gaps between ceramic tiles filled with ceramic-coated fabric that withstands temperatures as high as 2,000 degrees F (1,300 degrees C). Reusable high-temperature gap filler is made of fabric coated with ceramic slurry and bonded in place with room-temperature-vulcanized adhesive. Procedure used in kilns and furnaces.

  16. Computer-controlled optical scanning tile microscope.

    PubMed

    Wang, C; Shumyatsky, P; Zeng, F; Zevallos, M; Alfano, R R

    2006-02-20

    A new type of computer-controlled optical scanning, high-magnification imaging system with a large field of view is described that overcomes the commonly believed incompatibility of achieving both high magnification and a large field of view. The new system incorporates galvanometer scanners, a CCD camera, and a high-brightness LED source for the fast acquisition of a large number of a high-resolution segmented tile images with a magnification of 800x for each tile. The captured segmented tile images are combined to create an effective enlarged view of a target totaling 1.6 mm x 1.2 mm in area. The speed and sensitivity of the system make it suitable for high-resolution imaging and monitoring of a small segmented area of 320 microm x 240 microm with 4 microm resolution. Each tile segment of the target can be zoomed up without loss of the high resolution. This new microscope imaging system gives both high magnification and a large field of view. This microscope can be utilized in medicine, biology, semiconductor inspection, device analysis, and quality control. PMID:16523776

  17. TILE at Iowa: Adoption and Adaptation

    ERIC Educational Resources Information Center

    Florman, Jean C.

    2014-01-01

    This chapter introduces a University of Iowa effort to enhance and support active learning pedagogies in technology-enhanced (TILE) classrooms and three elements that proved essential to the campus-wide adoption of those pedagogies. It then describes the impact of those professional development efforts on the curricula and cultures of three…

  18. Performance of the ATLAS Tile Calorimeter

    NASA Astrophysics Data System (ADS)

    Heelan, Louise; ATLAS Collaboration

    2015-06-01

    The ATLAS Tile hadronic calorimeter (TileCal) provides highly-segmented energy measurements of incoming particles. It is a key detector for the measurement of hadrons, jets, tau leptons and missing transverse energy. It is also useful for identification and reconstruction of muons due to good signal to noise ratio. The calorimeter consists of thin steel plates and 460,000 scintillating tiles configured into 5000 cells, each viewed by two photomultipliers. The calorimeter response and its readout electronics is monitored to better than 1% using radioactive source, laser and charge injection systems. The calibration and performance of the calorimeter have been established through test beam measurements, cosmic ray muons and the large sample of proton-proton collisions acquired in 2011 and 2012. Results on the calorimeter performance are presented, including the absolute energy scale, timing, noise and associated stabilities. The results demonstrate that the Tile Calorimeter has performed well within the design requirements and it has given essential contribution to reconstructed objects and physics results. In addition, the data quality procedures used during the LHC data-taking are described and the outcome of the detector consolidation in the maintenance period is also presented.

  19. Comparative gene expression study of the vestibular organ of the Igf1 deficient mouse using whole-transcript arrays.

    PubMed

    Rodríguez-de la Rosa, Lourdes; Sánchez-Calderón, Hortensia; Contreras, Julio; Murillo-Cuesta, Silvia; Falagan, Sandra; Avendaño, Carlos; Dopazo, Joaquín; Varela-Nieto, Isabel; Milo, Marta

    2015-12-01

    The auditory and vestibular organs form the inner ear and have a common developmental origin. Insulin like growth factor 1 (IGF-1) has a central role in the development of the cochlea and maintenance of hearing. Its deficiency causes sensorineural hearing loss in man and mice. During chicken early development, IGF-1 modulates neurogenesis of the cochleovestibular ganglion but no further studies have been conducted to explore the potential role of IGF-1 in the vestibular system. In this study we have compared the whole transcriptome of the vestibular organ from wild type and Igf1(-/-) mice at different developmental and postnatal times. RNA was prepared from E18.5, P15 and P90 vestibular organs of Igf1(-/-) and Igf1(+/+) mice and the transcriptome analysed in triplicates using Affymetrix(®) Mouse Gene 1.1 ST Array Plates. These plates are whole-transcript arrays that include probes to measure both messenger (mRNA) and long intergenic non-coding RNA transcripts (lincRNA), with a coverage of over 28 thousand coding transcripts and over 7 thousands non-coding transcripts. Given the complexity of the data we used two different methods VSN-RMA and mmBGX to analyse and compare the data. This is to better evaluate the number of false positives and to quantify uncertainty of low signals. We identified a number of differentially expressed genes that we described using functional analysis and validated using RT-qPCR. The morphology of the vestibular organ did not show differences between genotypes and no evident alterations were observed in the vestibular sensory areas of the null mice. However, well-defined cellular alterations were found in the vestibular neurons with respect their number and size. Although these mice did not show a dramatic vestibular phenotype, we conducted a functional analysis on differentially expressed genes between genotypes and across time. This was with the aim to identify new pathways that are involved in the development of the vestibular organ

  20. Tile-based Level of Detail for the Parallel Age

    SciTech Connect

    Niski, K; Cohen, J D

    2007-08-15

    Today's PCs incorporate multiple CPUs and GPUs and are easily arranged in clusters for high-performance, interactive graphics. We present an approach based on hierarchical, screen-space tiles to parallelizing rendering with level of detail. Adapt tiles, render tiles, and machine tiles are associated with CPUs, GPUs, and PCs, respectively, to efficiently parallelize the workload with good resource utilization. Adaptive tile sizes provide load balancing while our level of detail system allows total and independent management of the load on CPUs and GPUs. We demonstrate our approach on parallel configurations consisting of both single PCs and a cluster of PCs.

  1. Salmonella and fecal indicator bacteria in tile waters draining poultry litter application fields in central Iowa

    NASA Astrophysics Data System (ADS)

    Hruby, C.; Soupir, M.

    2012-12-01

    E. coli and enterococci are commonly used as pathogen indicators in surface waters. Along with these indicators, pathogenic Salmonella are prevalent in poultry litter, and have the potential to be transported from land-application areas to tile waters and ultimately to impact waters that are used for drinking-water and recreation. The fate and transport of these bacteria to drainage tiles from application fields, and the correlation of fecal indicator bacteria to pathogens in this setting, is poorly understood. In this field study, samples were obtained from poultry litter, soil, and drainage tile waters below chisel-plowed and no-till cornfields in central Iowa where poultry litter was applied each year in late spring prior to planting. Litter was applied at three different rates; commercial fertilizer with no litter, a low application rate based on the nitrogen requirements of the corn (PL1), and double the low rate (PL2). This site is characterized by low sloping (0-9%) Clarion and Nicollet soils, which are derived from glacial till. Samples were collected from April to September for three years (2010-12) when tiles were flowing. Record high precipitation fell during the sampling period in 2010, while 2011 and 2012 were exceptionally dry years at this location. Grab samples were taken directly from flowing tiles after every rainfall event (>2 cm in less than 24 hours) and samples were collected hourly throughout selected events using an automatic sampling device. Concentrations of E. coli, enterococci and Salmonella spp. were quantified by membrane filtration and growth on selective agars. Peak bacteria concentrations following rainfall events were often one order of magnitude higher in tile waters discharging from no-till plots, despite the smaller size and lower tile flow rates at these plots compared to the chisel-plowed plots. Bacteria concentrations regularly varied by two orders of magnitude in response to rainfall events. Bacteria transport via macropores

  2. A landsat data tiling and compositing approach optimized for change detection in the conterminous United States

    USGS Publications Warehouse

    Nelson, Kurtis; Steinwand, Daniel R.

    2015-01-01

    Annual disturbance maps are produced by the LANDFIRE program across the conterminous United States (CONUS). Existing LANDFIRE disturbance data from 1999 to 2010 are available and current efforts will produce disturbance data through 2012. A tiling and compositing approach was developed to produce bi-annual images optimized for change detection. A tiled grid of 10,000 × 10,000 30 m pixels was defined for CONUS and adjusted to consolidate smaller tiles along national borders, resulting in 98 non-overlapping tiles. Data from Landsat-5,-7, and -8 were re-projected to the tile extents, masked to remove clouds, shadows, water, and snow/ice, then composited using a cosine similarity approach. The resultant images were used in a change detection algorithm to determine areas of vegetation change. This approach enabled more efficient processing compared to using single Landsat scenes, by taking advantage of overlap between adjacent paths, and allowed an automated system to be developed for the entire process.

  3. Well-differentiated angiosarcoma of spleen: a teaching case mimicking hemagioma and cytogenetic analysis with array comparative genomic hybridization.

    PubMed

    Xu, Lichen; Zhang, Yimin; Zhao, Hong; Chen, Qingxiao; Ma, Weihang; Li, Lanjuan

    2015-01-01

    Primary splenic angiosarcoma is extremely rare but aggressive malignant vascular neoplasm. Here, we report a case of vascular tumor in spleen that was initially misinterpreted as hemangioma. Two years after splenectomy, the patient admitted again with aggravated abdomen pain and severe anemia. The magnetic resonance imaging (MRI) scan showed widely metastases. The ensuing biopsy for lesion both in liver and in bone marrow showed the similar pathological findings as that in spleen, which supported the final diagnosis of well-differentiated splenic angiosarcoma with extensive metastases. The patient was dead in 3 months after discharge without chemotherapy. The copy number changes for spleen lesion detected by array comparative genome hybridization showed copy number gain at 11q23.2, 11q24.3, 12q24.33, 13q34, copy number loss at 1q24.2-q31.3, 1q41-q42.2, 1 q42.3-q43, 2q36.3-q37.3, 2q37.7, 3q13.33-q26.2, 3q28 - q29, 9p11.2, 13q11, 15q11, homozygous copy loss at 8p11.22, 22q11.23. Less than 200 cases of splenic angiosarcoma have been published in literature of English. To the best of our knowledge, this is the first time analyzed cytogenetic alteration in a well-differentiated primary splenic angiosarcoma. PMID:26462621

  4. Well-differentiated angiosarcoma of spleen: a teaching case mimicking hemagioma and cytogenetic analysis with array comparative genomic hybridization.

    PubMed

    Xu, Lichen; Zhang, Yimin; Zhao, Hong; Chen, Qingxiao; Ma, Weihang; Li, Lanjuan

    2015-10-13

    Primary splenic angiosarcoma is extremely rare but aggressive malignant vascular neoplasm. Here, we report a case of vascular tumor in spleen that was initially misinterpreted as hemangioma. Two years after splenectomy, the patient admitted again with aggravated abdomen pain and severe anemia. The magnetic resonance imaging (MRI) scan showed widely metastases. The ensuing biopsy for lesion both in liver and in bone marrow showed the similar pathological findings as that in spleen, which supported the final diagnosis of well-differentiated splenic angiosarcoma with extensive metastases. The patient was dead in 3 months after discharge without chemotherapy. The copy number changes for spleen lesion detected by array comparative genome hybridization showed copy number gain at 11q23.2, 11q24.3, 12q24.33, 13q34, copy number loss at 1q24.2-q31.3, 1q41-q42.2, 1 q42.3-q43, 2q36.3-q37.3, 2q37.7, 3q13.33-q26.2, 3q28 - q29, 9p11.2, 13q11, 15q11, homozygous copy loss at 8p11.22, 22q11.23. Less than 200 cases of splenic angiosarcoma have been published in literature of English. To the best of our knowledge, this is the first time analyzed cytogenetic alteration in a well-differentiated primary splenic angiosarcoma.

  5. De novo design of an RNA tile that self-assembles into a homo-octameric nanoprism

    NASA Astrophysics Data System (ADS)

    Yu, Jinwen; Liu, Zhiyu; Jiang, Wen; Wang, Guansong; Mao, Chengde

    2015-01-01

    Rational, de novo design of RNA nanostructures can potentially integrate a wide array of structural and functional diversities. Such nanostructures have great promises in biomedical applications. Despite impressive progress in this field, all RNA building blocks (or tiles) reported so far are not geometrically well defined. They are generally flexible and can only assemble into a mixture of complexes with different sizes. To achieve defined structures, multiple tiles with different sequences are needed. In this study, we design an RNA tile that can homo-oligomerize into a uniform RNA nanostructure. The designed RNA nanostructure is characterized by gel electrophoresis, atomic force microscopy and cryogenic electron microscopy imaging. We believe that development along this line would help RNA nanotechnology to reach the structural control that is currently associated with DNA nanotechnology.

  6. Covering shapes with tiles: Primary students' visualisation and drawing

    NASA Astrophysics Data System (ADS)

    Owens, Kay; Outhred, Lynne

    1998-12-01

    Students' early area concepts were investigated by an analysis of responses to a worksheet of items that involved visualising the tiling of given figures. Students in Years 2 and 4 in four schools attempted the items on three occasions and some of the students completed ten classroom spatial activities. Half the students had difficulty visualising the tiling of shapes, but students who participated in spatial activities were generally more successful in determining the number of tiles that would cover a shape. Students' drawings indicated a varying awareness of structural features such as alignment and tile size. Students who drew the tilings were more likely to be successful on the items involving trapezia. The tiling items were part of a test of spatial thinking, Thinking About 2D Shapes, and scores on the overall test were very highly correlated with results for the tiling items.

  7. Beautiful Math, Part 5: Colorful Archimedean Tilings from Dynamical Systems.

    PubMed

    Ouyang, Peichang; Zhao, Weiguo; Huang, Xuan

    2015-01-01

    The art of tiling originated very early in the history of civilization. Almost every known human society has made use of tilings in some form or another. In particular, tilings using only regular polygons have great visual appeal. Decorated regular tilings with continuous and symmetrical patterns were widely used in decoration field, such as mosaics, pavements, and brick walls. In science, these tilings provide inspiration for synthetic organic chemistry. Building on previous CG&A “Beautiful Math” articles, the authors propose an invariant mapping method to create colorful patterns on Archimedean tilings (1-uniform tilings). The resulting patterns simultaneously have global crystallographic symmetry and local cyclic or dihedral symmetry.

  8. Using multivariate analyses to compare subsets of electrodes and potentials within an electrode array for predicting sugar concentrations in mixed solutions.

    SciTech Connect

    Stork, Christopher Lyle; Steen, William Arthur

    2008-04-01

    A non-selective electrode array is presented for the quantification of fructose, galactose, and glucose in mixed solutions. A unique feature of this electrode array relative to other published work is the wide diversity of electrode materials incorporated within the array, being constructed of 41 different metals and metal alloys. Cyclic voltammograms were acquired for solutions containing a single sugar at varying concentrations, and the correlation between current and sugar concentration was calculated as a function of potential and electrode array element. The correlation plots identified potential regions and electrodes that scaled most linearly with sugar concentration, and the number of electrodes used in building predictive models was reduced to 15. Partial least squares regression models relating electrochemical response to sugar concentration were constructed using data from single electrodes and multiple electrodes within the array, and the predictive abilities of these models were rigorously compared using a non-parametric Wilcoxon test. Models using single electrodes (Pt:Rh (90:10) for fructose, Au:Ni (82:18) for galactose, and Au for glucose) were judged to be statistically superior or indistinguishable from those built with multiple electrodes. Additionally, for each sugar, interval partial least squares regression successfully identified a subset of potentials within a given electrode that generated a model of statistically equivalent predictive ability relative to the full potential model. While including data from multiple electrodes offered no benefit in predicting sugar concentration, use of the array afforded the versatility and flexibility of selecting the best single electrode for each sugar.

  9. Degenerate polygonal tilings in simple animal tissues

    NASA Astrophysics Data System (ADS)

    Hočevar, A.; Ziherl, P.

    2009-07-01

    The salient feature of one-cell-thick epithelia is their en face view, which reveals the polygonal cross section of the close-packed prismatic cells. The physical mechanisms that shape these tissues were hitherto explored using theories based on cell proliferation, which were either entirely topological or included certain morphogenetic forces. But mitosis itself may not be instrumental in molding the tissue. We show that the structure of simple epithelia can be explained by an equilibrium model where energy-degenerate polygons in an entropy-maximizing tiling are described by a single geometric parameter encoding their inflatedness. The two types of tilings found numerically—ordered and disordered—closely reproduce the patterns observed in Drosophila, Hydra, and Xenopus and they generalize earlier theoretical results. Free of a specific cell self-energy, cell-cell interaction, and cell division kinetics, our model provides an insight into the universality of living and inanimate two-dimensional cellular structures.

  10. Anosov Diffeomorphisms and {γ}-Tilings

    NASA Astrophysics Data System (ADS)

    Almeida, João P.; Pinto, Alberto A.

    2016-07-01

    We consider a toral Anosov automorphism {G_γ:{mathbb{T}}_γto{mathbb{T}}_γ} given by {G_γ(x,y)=(ax+y,x)} in the { < v,w > } base, where {ainmathbb{N} backslash\\{1\\}}, {γ=1/(a+1/(a+1/ldots))}, {v=(γ,1)} and {w=(-1,γ)} in the canonical base of {{mathbb{R}}^2} and {{mathbb{T}}_γ={mathbb{R}}^2/(v{mathbb{Z}} × w{mathbb{Z}})}. We introduce the notion of {γ}-tilings to prove the existence of a one-to-one correspondence between (i) marked smooth conjugacy classes of Anosov diffeomorphisms, with invariant measures absolutely continuous with respect to the Lebesgue measure, that are in the isotopy class of {G_γ}; (ii) affine classes of {γ}-tilings; and (iii) {γ}-solenoid functions. Solenoid functions provide a parametrization of the infinite dimensional space of the mathematical objects described in these equivalences.

  11. Firing ceramic tiles in solar energy equipment

    SciTech Connect

    Pasichnyi, V.V.; Berezhetskaya, V.Ya.; Chop, Yu.I.; Kashket, G.I.

    1987-03-01

    In the interest of satisfying the growing demand for glazed ceramic tiles and conserving the natural gas ordinarily used to fire them, the authors assess the feasibility of using a solar kiln for the process. Their design incorporates a parabolic reflector and a tracking system to continuously focus radiant solar energy on the tile. Their energy analysis includes such factors as solar thermal input, radiant heat transfer, and heat flow, the relationship between the firing time and the heat flow density, and the surface quality of the glaze and colorizer. Their results indicate that when the heat flow density rises above a level at which the specific expenditure of heat is no longer dependent on the color of the pigment, this expenditure or input comes to a quarter of what is currently needed using existing technologies and fuels.

  12. Spectrum of Cytogenomic Abnormalities Revealed by Array Comparative Genomic Hybridization on Products of Conception Culture Failure and Normal Karyotype Samples.

    PubMed

    Zhou, Qinghua; Wu, Shen-Yin; Amato, Katherine; DiAdamo, Autumn; Li, Peining

    2016-03-20

    Approximately 30% of pregnancies after implantation end up in spontaneous abortions, and 50% of them are caused by chromosomal abnormalities. However, the spectrum of genomic copy number variants (CNVs) in products of conception (POC) and the underlying gene-dosage-sensitive mechanisms causing spontaneous abortions remain largely unknown. In this study, array comparative genomic hybridization (aCGH) analysis was performed as a salvage procedure for 128 POC culture failure (POC-CF) samples and as a supplemental procedure for 106 POC normal karyotype (POC-NK) samples. Chromosomal abnormalities were detected in 10% of POC-CF and pathogenic CNVs were detected in 3.9% of POC-CF and 5.7% of POC-NK samples. Compiled results from this study and relevant case series through a literature review demonstrated an abnormality detection rate (ADR) of 35% for chromosomal abnormalities in POC-CF samples, 3.7% for pathogenic CNVs in POC-CF samples, and 4.6% for pathogenic CNVs in POC-NK samples. Ingenuity Pathway Analysis (IPA) was performed on the genes from pathogenic CNVs found in POC samples. The denoted primary gene networks suggested that apoptosis and cell proliferation pathways are involved in miscarriage. In summary, a similar spectrum of cytogenomic abnormalities was observed in POC culture success and POC-CF samples. A threshold effect correlating the number of dosage-sensitive genes in a chromosome with the observed frequency of autosomal trisomy is proposed. A rationalized approach using firstly fluorescence in situ hybridization (FISH) testing with probes of chromosomes X/Y/18, 13/21, and 15/16/22 for common aneuploidies and polyploidies and secondly aCGH for other cytogenomic abnormalities is recommended for POC-CF samples. PMID:27020032

  13. Tiling Assembly: a new tool for reference annotation-independent transcript assembly and novel gene identification by RNA-sequencing

    PubMed Central

    Watanabe, Kenneth A.; Homayouni, Arielle; Tufano, Tara; Lopez, Jennifer; Ringler, Patricia; Rushton, Paul; Shen, Qingxi J.

    2015-01-01

    Annotation of the rice (Oryza sativa) genome has evolved significantly since release of its draft sequence, but it is far from complete. Several published transcript assembly programmes were tested on RNA-sequencing (RNA-seq) data to determine their effectiveness in identifying novel genes to improve the rice genome annotation. Cufflinks, a popular assembly software, did not identify all transcripts suggested by the RNA-seq data. Other assembly software was CPU intensive, lacked documentation, or lacked software updates. To overcome these shortcomings, a heuristic ab initio transcript assembly algorithm, Tiling Assembly, was developed to identify genes based on short read and junction alignment. Tiling Assembly was compared with Cufflinks to evaluate its gene-finding capabilities. Additionally, a pipeline was developed to eliminate false-positive gene identification due to noise or repetitive regions in the genome. By combining Tiling Assembly and Cufflinks, 767 unannotated genes were identified in the rice genome, demonstrating that combining both programmes proved highly efficient for novel gene identification. We also demonstrated that Tiling Assembly can accurately determine transcription start sites by comparing the Tiling Assembly genes with their corresponding full-length cDNA. We applied our pipeline to additional organisms and identified numerous unannotated genes, demonstrating that Tiling Assembly is an organism-independent tool for genome annotation. PMID:26341416

  14. NASA TileWorld Simulator Program

    NASA Technical Reports Server (NTRS)

    Philips, Andrew; Bresina, John; Drummond, Mark

    1993-01-01

    NASA TileWorld (NTW) computer program formulated to further research on planning, scheduling, and control problems. Designed to focus on three particular attributes of real-world problems: exogenous events, uncertain outcomes of actions, and metric time. Written specifically for use by NASA, NTW modified easily to act as software base for other simulated environments. Written in Allegro Common Lisp for Sun-3-(TM) and Sun-4-series(TM) computers running SunOS(TM).

  15. Microbial Volatile Organic Compound Emissions from Stachybotrys chartarum growing on Gypsum Wallboard and Ceiling tile

    EPA Science Inventory

    This study compared seven toxigenic strains of S. chartarum found in water-damaged buildings to characterize the microbial volatile organic compound (MVOC) emissions profile while growing on gypsum wallboard (W) and ceiling tile (C) coupons. The inoculated coupons with their sub...

  16. Laser printing of enamels on tiles

    NASA Astrophysics Data System (ADS)

    Fernández-Pradas, J. M.; Restrepo, J. W.; Gómez, M. A.; Serra, P.; Morenza, J. L.

    2007-07-01

    A Nd:YAG laser beam is used as a tool to print patterns of coloured enamels on tile substrates. For this, the laser beam is scanned over a layer of raw enamel previously sprayed on the tile surface. The possibility to focus the laser energy to heat a small zone without affecting the rest of the piece presents some advantages in front of traditional furnace techniques in which the whole piece has to be heated; among them, energy saving and the possibility to apply enamels with higher melting temperatures than those of the substrate. In this work, we study the effects of laser irradiation of a green enamel, based in chromium oxide pigment and lead frit, deposited on a white tile substrate. Lines obtained with different combinations of laser beam power and scan speeds were investigated with the aim to optimize the process from the point of view of the quality of the patterns. For this purpose, the morphology of the lines and their cross-sections is studied. The results show that lines with good visual properties can be printed with the laser. The characteristics of the marked lines were found to be directly related with the accumulated energy density delivered. Moreover, there is a linear relationship between the accumulated energy density and the volume of melted material. A minimum accumulated energy density is required to melt a shallow zone of the glazed substrate to allow the adhesion of the enamelled lines.

  17. Foam-on-Tile Damage Model

    NASA Technical Reports Server (NTRS)

    Koharchik, Michael; Murphy, Lindsay; Parker, Paul

    2012-01-01

    An impact model was developed to predict how three specific foam types would damage the Space Shuttle Orbiter insulating tiles. The inputs needed for the model are the foam type, the foam mass, the foam impact velocity, the foam impact incident angle, the type being impacted, and whether the tile is new or aged (has flown at least one mission). The model will determine if the foam impact will cause damage to the tile. If it can cause damage, the model will output the damage cavity dimensions (length, depth, entry angle, exit angle, and sidewall angles). It makes the calculations as soon as the inputs are entered (less than 1 second). The model allows for the rapid calculation of numerous scenarios in a short time. The model was developed from engineering principles coupled with significant impact testing (over 800 foam impact tests). This model is applicable to masses ranging from 0.0002 up to 0.4 pound (0.09 up to 181 g). A prior tool performed a similar function, but was limited to the assessment of a small range of masses and did not have the large test database for verification. In addition, the prior model did not provide outputs of the cavity damage length, entry angle, exit angle, or sidewall angles.

  18. Properties of ceramic tiles made from bio-treated bodies for internal wall tiles

    SciTech Connect

    Sidorova, V.A.; Biryukova, O.V.; Pyatkova, Z.P.; Solnyshkina, T.N.; Vainberg, S.N.

    1986-07-01

    The influence of bio-treatment on the structure and properties of internal wall tiles was tested. Nepheline-dolomite body D-8 was used for the manufacturing of the tiles. At the stage in which the clays and nonplastics are blended in the mixing tank with the slip, a suspension of silicate bacteria was added. It was found that the most marked change begins after three days. Tables show the fluidity of the experimental and control slips and the relationship between the density of the pressed specimens and the pressing force. The viscosity of the slip with the addition of the electrolyte is much lower than the viscosity of the control slip. The introduction of biotechnology in the production of ceramic tiles for internal wall facing will reduce the fuel consumption by 8-10%, reduce the cost of installing rollers made from scarce steels, reduce the amount of loss, and increase the grading of the product.

  19. Survival of Staphylococcus aureus exposed to UV radiation on the surface of ceramic tiles coated with TiO2.

    PubMed

    Szczawiński, J; Tomaszewski, H; Jackowska-Tracz, A; Szczawińska, M E

    2011-01-01

    The aim of this study was to determine and compare the antimicrobial activity of UV radiation of wavelength 253.7 nm (used in typical germicidal lamps) against Staphylococcus aureus on the surfaces of conventionally produced white ceramic wall tiles (matt and shiny) and the same tiles coated with TiO2 using three different methods: RF diode sputtering, atmospheric pressure chemical vapour deposition (APCVD) and spray pyrolysis deposition (SPD). Results clearly indicate that the bactericidal action of UV radiation is much stronger on the surfaces of tiles coated with TiO2 than on the tiles uncovered. The strongest bactericidal effect of UV radiation was found for film prepared by APCVD. Results of experiments for shiny and matt tiles did not differ statistically. The use of ceramic wall tiles coated with TiO2 films in hospitals, veterinary clinics, laboratories, food processing plants and other places where UV radiation is applied for disinfection should greatly improve the efficiency of this treatment.

  20. Use of thin film transistor liquid crystal display (TFT-LCD) waste glass in the production of ceramic tiles.

    PubMed

    Lin, Kae-Long

    2007-09-01

    In this study, we employ the following operating conditions: varied pressure (25 kgf/cm(2)), sintering temperature (900-1200 degrees C), sintering time (6h), percentage of thin film transistor liquid crystal display (TFT-LCD) waste glass by weight (0-50%) and temperature rising at a rate of 5 degrees C/min, to fabricate clay tiles. The sintering characteristics of the clay blended with TFT-LCD waste glass tiles are examined to evaluate the feasibility of the reuse of TFT-LCD waste glass. TFT-LCD waste glass contains large amounts of glass. The TCLP leaching concentrations all met the ROC EPAs current regulatory thresholds. The addition of TFT-LCD waste glass to the mixture, increased the apparent weight loss. The incorporation of 50% TFT-LCD waste glass resulted in a significant increase in the porosity ratio of the specimens compared to the porosity ratio of the ceramic tile containing TFT-LCD waste glass. The main constituent in both the clay tile and the clay with TFT-LCD waste glass samples is quartz. Increasing the temperature resulted in an increase in the flexural strength and resistance to abrasion in the tiles. The porosity ratio decreases as shrinkage increases. The relation between the porosity ratio and the hardness of the tiles used in the study is also shown. PMID:17367925

  1. Use of thin film transistor liquid crystal display (TFT-LCD) waste glass in the production of ceramic tiles.

    PubMed

    Lin, Kae-Long

    2007-09-01

    In this study, we employ the following operating conditions: varied pressure (25 kgf/cm(2)), sintering temperature (900-1200 degrees C), sintering time (6h), percentage of thin film transistor liquid crystal display (TFT-LCD) waste glass by weight (0-50%) and temperature rising at a rate of 5 degrees C/min, to fabricate clay tiles. The sintering characteristics of the clay blended with TFT-LCD waste glass tiles are examined to evaluate the feasibility of the reuse of TFT-LCD waste glass. TFT-LCD waste glass contains large amounts of glass. The TCLP leaching concentrations all met the ROC EPAs current regulatory thresholds. The addition of TFT-LCD waste glass to the mixture, increased the apparent weight loss. The incorporation of 50% TFT-LCD waste glass resulted in a significant increase in the porosity ratio of the specimens compared to the porosity ratio of the ceramic tile containing TFT-LCD waste glass. The main constituent in both the clay tile and the clay with TFT-LCD waste glass samples is quartz. Increasing the temperature resulted in an increase in the flexural strength and resistance to abrasion in the tiles. The porosity ratio decreases as shrinkage increases. The relation between the porosity ratio and the hardness of the tiles used in the study is also shown.

  2. Design, fabrication, and tests of a metallic shell tile thermal protection system for space transportation

    NASA Technical Reports Server (NTRS)

    Macconochie, Ian O.; Kelly, H. Neale

    1989-01-01

    A thermal protection tile for earth-to-orbit transports is described. The tiles consist of a rigid external shell filled with a flexible insulation. The tiles tend to be thicker than the current Shuttle rigidized silica tiles for the same entry heat load but are projected to be more durable and lighter. The tiles were thermally tested for several simulated entry trajectories.

  3. Military Curriculum Materials for Vocational and Technical Education. Builders School, Ceramic Tile Setting 3-9.

    ERIC Educational Resources Information Center

    Ohio State Univ., Columbus. National Center for Research in Vocational Education.

    This course, for individualized or group instruction on ceramic tile setting, was developed from military sources for use in vocational education. The course provides students with skills in mortar preparation, surface preparation, tile layout planning, tile setting, tile cutting, and the grouting of tile joints. Both theory and shop assignments…

  4. High-resolution mapping of genotype-phenotype relationships in cridu chat syndrome using array comparative genomic hybridization

    SciTech Connect

    Zhang, Xiaoxiao; Snijders, Antoine; Segraves, Richard; Zhang,Xiuqing; Niebuhr, Anita; Albertson, Donna; Yang, Huanming; Gray, Joe; Niebuhr, Erik; Bolund, Lars; Pinkel, Dan

    2007-07-03

    We have used array comparative genomic hybridization to map DNA copy-number changes in 94 patients with cri du chat syndrome who had been carefully evaluated for the presence of the characteristic cry, speech delay, facial dysmorphology, and level of mental retardation (MR). Most subjects had simple deletions involving 5p (67 terminal and 12 interstitial). Genotype-phenotype correlations localized the region associated with the cry to 1.5 Mb in distal 5p15.31, between bacterial artificial chromosomes (BACs) containing markers D5S2054 and D5S676; speech delay to 3.2 Mb in 5p15.32-15.33, between BACs containing D5S417 and D5S635; and the region associated with facial dysmorphology to 2.4 Mb in 5p15.2-15.31, between BACs containing D5S208 and D5S2887. These results overlap and refine those reported in previous publications. MR depended approximately on the 5p deletion size and location, but there were many cases in which the retardation was disproportionately severe, given the 5p deletion. All 15 of these cases, approximately two-thirds of the severely retarded patients, were found to have copy-number aberrations in addition to the 5p deletion. Restriction of consideration to patients with only 5p deletions clarified the effect of such deletions and suggested the presence of three regions, MRI-III, with differing effect on retardation. Deletions including MRI, a 1.2-Mb region overlapping the previously defined cri du chat critical region but not including MRII and MRIII, produced a moderate level of retardation. Deletions restricted to MRII, located just proximal to MRI, produced a milder level of retardation, whereas deletions restricted to the still-more proximal MRIII produced no discernible phenotype. However, MR increased as deletions that included MRI extended progressively into MRII and MRIII, and MR became profound when all three regions were deleted.

  5. 55. QUARRY TILE CUTTERS, SECOND FLOOR, NORTH WING. WORKERS PRESSED ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    55. QUARRY TILE CUTTERS, SECOND FLOOR, NORTH WING. WORKERS PRESSED THE CUTTERS INTO SLABS OF CLAY, LIFTED THEM ONTO DRYING BOARDS AND PRESSED THE PLUNGERS TO RELEASE THE CUT TILES. REPRODUCTIONS CUTTERS ARE NOT USED IN PRODUCTION. WOODEN FORMS FOR PRODUCING CLAY SLABS WITH ROLLING PINS REST AGAINST THE WALL. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  6. Intrinsic DNA curvature of double-crossover tiles

    NASA Astrophysics Data System (ADS)

    Kim, Seungjae; Kim, Junghoon; Qian, Pengfei; Shin, Jihoon; Amin, Rashid; Ahn, Sang Jung; LaBean, Thomas H.; Kim, Moon Ki; Park, Sung Ha

    2011-06-01

    A theoretical model which takes into account the structural distortion of double-crossover DNA tiles has been studied to investigate its effect on lattice formation sizes. It has been found that a single vector appropriately describes the curvature of the tiles, of which a higher magnitude hinders lattice growth. In conjunction with these calculations, normal mode analysis reveals that tiles with relative higher frequencies have an analogous effect. All the theoretical results are shown to be in good agreement with experimental data.

  7. On the perturbation of a uniform tiling with resistors

    NASA Astrophysics Data System (ADS)

    Owaidat, M. Q.; Asad, J. H.; Tan, Zhi-Zhong

    2016-06-01

    The perturbation of a uniformly tiled resistor network by adding an edge (a resistor) to the network is considered. The two-point resistance on the perturbed tiling in terms of that on the perfect tiling is obtained using Green’s function. Some theoretical results are presented for an infinite modified square lattice. These results are confirmed experimentally by constructing an actual resistor lattice of size 13 × 13.

  8. [Respiratory viral diagnosis by using an automated system of multiplex PCR (FilmArray) compared to conventional methods].

    PubMed

    Marcone, Débora N; Carballal, Guadalupe; Ricarte, Carmen; Echavarria, Marcela

    2015-01-01

    Acute respiratory infections, which are commonly caused by viruses, are an important cause of morbidity and mortality in children. In Argentina, national surveillance programs for the detection of respiratory viruses are usually performed by using immunofluorescence (IF) assays, although it is well known that molecular methods are more sensitive. An automated multiplex PCR device, the FilmArray-Respiratory Panel (FilmArray-RP), can detect 17 viral and 3 bacterial pathogens in a closed system that requires only 5 min of hands-on time and 1h of instrumentation time. A total of 315 respiratory samples from children under 6 years of age suffering from acute respiratory infections, were studied by IF for 8 respiratory viruses and by RT-PCR for rhinoviruses. Later, these samples were tested by the FilmArray-RP. The positivity frequency obtained for the 9 viruses tested was 75% by IF/RT-PCR and 92% by the FilmArray-RP. The positive and negative percent agreement between both methods was 70.5% whereas the negative percent agreement was 99.6% (95% confidence interval:65.5-75.1 and 99.2-99.8 respectively). The FilmArray-RP allowed a higher positive diagnosis (97%) and detected other viruses such as coronavirus NL63, 229E, OC43, HKU1 (10%) and bocavirus (18%). In addition, this method identified multiple coinfections (39%) with 2, 3, 4 and up to 5 different viruses. At present, IF is still the most frequently used method in most Latin American countries for respiratory viruses diagnosis due to its low cost, its capability to process a high number of samples simultaneously and the fast determination of results for the most frequent viruses, which are available within 5h. However, the coming incorporation of molecular methods in routine procedures will significantly increase the diagnostic yield of these infections.

  9. Tritium in the DIII-D carbon tiles

    SciTech Connect

    Taylor, P.L.; Kellman, A.G.; Lee, R.L.

    1993-06-01

    The amount of tritium in the carbon tiles used as a first wall in the DIII-D tokamak was measured recently when the tiles were removed and cleaned. The measurements were made as part of the task of developing the appropriate safety procedures for processing of the tiles. The surface tritium concentration on the carbon tiles was surveyed and the total tritium released from tile samples was measured in test bakes. The total tritium in all the carbon tiles at the time the tiles were removed for cleaning is estimated to be 15 mCi and the fraction of tritium retained in the tiles from DIII-D operations has a lower bound of 10%. The tritium was found to be concentrated in a narrow surface layer on the plasma facing side of the tile, was fully released when baked to 1,000{degree}C, and was released in the form of tritiated gas (DT) as opposed to tritiated water (DTO) when baked.

  10. NASA TileWorld manual (system version 2.2)

    NASA Technical Reports Server (NTRS)

    Philips, Andrew B.; Bresina, John L.

    1991-01-01

    The commands are documented of the NASA TileWorld simulator, as well as providing information about how to run it and extend it. The simulator, implemented in Common Lisp with Common Windows, encodes a particular range in a spectrum of domains, for controllable research experiments. TileWorld consists of a two dimensional grid of cells, a set of polygonal tiles, and a single agent which can grasp and move tiles. In addition to agent executable actions, there is an external event over which the agent has not control; this event correspond to a 'gust of wind'.

  11. Array comparative genomic hybridisation analysis of boys with X linked hypopituitarism identifies a 3.9 Mb duplicated critical region at Xq27 containing SOX3

    PubMed Central

    Solomon, N; Ross, S; Morgan, T; Belsky, J; Hol, F; Karnes, P; Hopwood, N; Myers, S; Tan, A; Warne, G; Forrest, S; Thomas, P

    2004-01-01

    Introduction: Array comparative genomic hybridisation (array CGH) is a powerful method that detects alteration of gene copy number with greater resolution and efficiency than traditional methods. However, its ability to detect disease causing duplications in constitutional genomic DNA has not been shown. We developed an array CGH assay for X linked hypopituitarism, which is associated with duplication of Xq26–q27. Methods: We generated custom BAC/PAC arrays that spanned the 7.3 Mb critical region at Xq26.1–q27.3, and used them to search for duplications in three previously uncharacterised families with X linked hypopituitarism. Results: Validation experiments clearly identified Xq26–q27 duplications that we had previously mapped by fluorescence in situ hybridisation. Array CGH analysis of novel XH families identified three different Xq26–q27 duplications, which together refine the critical region to a 3.9 Mb interval at Xq27.2–q27.3. Expression analysis of six orthologous mouse genes from this region revealed that the transcription factor Sox3 is expressed at 11.5 and 12.5 days after conception in the infundibulum of the developing pituitary and the presumptive hypothalamus. Discussion: Array CGH is a robust and sensitive method for identifying X chromosome duplications. The existence of different, overlapping Xq duplications in five kindreds indicates that X linked hypopituitarism is caused by increased gene dosage. Interestingly, all X linked hypopituitarism duplications contain SOX3. As mutation of this gene in human beings and mice results in hypopituitarism, we hypothesise that increased dosage of Sox3 causes perturbation of pituitary and hypothalamic development and may be the causative mechanism for X linked hypopituitarism. PMID:15342697

  12. Complex tiling patterns in liquid crystals

    PubMed Central

    Tschierske, C.; Nürnberger, C.; Ebert, H.; Glettner, B.; Prehm, M.; Liu, F.; Zeng, X.-B.; Ungar, G.

    2012-01-01

    In this account recent progress in enhancing the complexity of liquid crystal self-assembly is highlighted. The discussed superstructures are formed mainly by polyphilic T-shaped and X-shaped molecules composed of a rod-like core, tethered with glycerol units at both ends and flexible non-polar chain(s) in lateral position, but also related inverted molecular structures are considered. A series of honeycomb phases composed of polygonal cylinders ranging from triangular to hexagonal, followed by giant cylinder honeycombs is observed for ternary T-shaped polyphiles on increasing the size of the lateral chain(s). Increasing the chain size further leads to new modes of lamellar organization followed by three-dimensional and two-dimensional structures incorporating branched and non-branched axial rod-bundles. Grafting incompatible chains to opposite sides of the rod-like core leads to quaternary X-shaped polyphiles. These form liquid crystalline honeycombs where different cells are filled with different material. Projected on an Euclidian plane, all honeycomb phases can be described either by uniformly coloured Archimedean and Laves tiling patterns (T-shaped polyphiles) or as multi-colour tiling patterns (X-shaped polyphiles). It is shown that geometric frustration, combined with the tendency to segregate incompatible chains into different compartments and the need to find a periodic tiling pattern, leads to a significant increase in the complexity of soft self-assembly. Mixing of different chains greatly enhances the number of possible ‘colours’ and in this way, periodic structures comprising up to seven distinct compartments can be generated. Relations to biological self-assembly are discussed shortly. PMID:24098852

  13. Tile Percolation: An OpenMP Tile Aware Parallelization Technique for the Cyclops-64 Multicore Processor

    NASA Astrophysics Data System (ADS)

    Gan, Ge; Wang, Xu; Manzano, Joseph; Gao, Guang R.

    Programming a multicore processor is difficult. It is even more difficult if the processor has software-managed memory hierarchy, e.g. the IBM Cyclops-64 (C64). A widely accepted parallel programming solution for multicore processor is OpenMP. Currently, all OpenMP directives are only used to decompose computation code (such as loop iterations, tasks, code sections, etc.). None of them can be used to control data movement, which is crucial for the C64 performance. In this paper, we propose a technique called tile percolation. This method provides the programmer with a set of OpenMP pragma directives. The programmer can use these directives to annotate their program to specify where and how to perform data movement. The compiler will then generate the required code accordingly. Our method is a semi-automatic code generation approach intended to simplify a programmer’s work. The paper provides (a) an exploration of the possibility of developing pragma directives for semi-automatic data movement code generation in OpenMP; (b) an introduction of techniques used to implement tile percolation including the programming API, the code generation in compiler, and the required runtime support routines; (c) and an evaluation of tile percolation with a set of benchmarks. Our experimental results show that tile percolation can make the OpenMP programs run on the C64 chip more efficiently.

  14. Real-time implementation of distortion corrections for a tiled EMCCD-based Solid State X-ray Image Intensifier (SSXII)

    PubMed Central

    Keleshis, C; Hoffmann, KR; Lee, J; Hamwi, H; Wang, W; Ionita, CN; Bednarek, DR; Verevkin, A.; Rudin, S

    2009-01-01

    The new Solid State X-ray Image Intensifier (SSXII) is being designed based on a modular imaging array of Electron Multiplying Charge Couple Devices (EMCCD). Each of the detector modules consists of a CsI(Tl) phosphor coupled to a fiber-optic plate, a fiber-optic taper (FOT), and an EMCCD sensor with its electronics. During the optical coupling and alignment of the modules into an array form, small orientation misalignments, such as rotation and translation of the EMCCD sensors, are expected. In addition, barrel distortion will result from the FOTs. Correction algorithms have been developed by our group for all the above artifacts. However, it is critical for the system’s performance to correct these artifacts in real-time (30 fps). To achieve this, we will use two-dimensional Look-Up-Tables (LUT) (each for x and y coordinates), which map the corrected pixel locations to the acquired-image pixel locations. To evaluate the feasibility of this approach, this process is simulated making use of parallel coding techniques to allow real-time distortion corrections for up to sixteen modules when a standard quad processor is used. The results of this simulation confirm that tiled field-of-views (FOV) comparable with those of flat panel detectors can be generated in ~17 ms (>30 fps). The increased FOV enabled through correction of tiled images, combined with the EMCCD characteristics of low noise, negligible lag and high sensitivity, should make possible the practical use of the SSXII with substantial advantages over conventional clinical systems. PMID:19777121

  15. Real-time implementation of distortion corrections for a tiled EMCCD-based Solid State X-ray Image Intensifier (SSXII).

    PubMed

    Keleshis, C; Hoffmann, Kr; Lee, J; Hamwi, H; Wang, W; Ionita, Cn; Bednarek, Dr; Verevkin, A; Rudin, S

    2009-01-01

    The new Solid State X-ray Image Intensifier (SSXII) is being designed based on a modular imaging array of Electron Multiplying Charge Couple Devices (EMCCD). Each of the detector modules consists of a CsI(Tl) phosphor coupled to a fiber-optic plate, a fiber-optic taper (FOT), and an EMCCD sensor with its electronics. During the optical coupling and alignment of the modules into an array form, small orientation misalignments, such as rotation and translation of the EMCCD sensors, are expected. In addition, barrel distortion will result from the FOTs. Correction algorithms have been developed by our group for all the above artifacts. However, it is critical for the system's performance to correct these artifacts in real-time (30 fps). To achieve this, we will use two-dimensional Look-Up-Tables (LUT) (each for x and y coordinates), which map the corrected pixel locations to the acquired-image pixel locations. To evaluate the feasibility of this approach, this process is simulated making use of parallel coding techniques to allow real-time distortion corrections for up to sixteen modules when a standard quad processor is used. The results of this simulation confirm that tiled field-of-views (FOV) comparable with those of flat panel detectors can be generated in ~17 ms (>30 fps). The increased FOV enabled through correction of tiled images, combined with the EMCCD characteristics of low noise, negligible lag and high sensitivity, should make possible the practical use of the SSXII with substantial advantages over conventional clinical systems.

  16. Analyses of Genotypes and Phenotypes of Ten Chinese Patients with Wolf-Hirschhorn Syndrome by Multiplex Ligation-dependent Probe Amplification and Array Comparative Genomic Hybridization

    PubMed Central

    Yang, Wen-Xu; Pan, Hong; Li, Lin; Wu, Hai-Rong; Wang, Song-Tao; Bao, Xin-Hua; Jiang, Yu-Wu; Qi, Yu

    2016-01-01

    Background: Wolf-Hirschhorn syndrome (WHS) is a contiguous gene syndrome that is typically caused by a deletion of the distal portion of the short arm of chromosome 4. However, there are few reports about the features of Chinese WHS patients. This study aimed to characterize the clinical and molecular cytogenetic features of Chinese WHS patients using the combination of multiplex ligation-dependent probe amplification (MLPA) and array comparative genomic hybridization (array CGH). Methods: Clinical information was collected from ten patients with WHS. Genomic DNA was extracted from the peripheral blood of the patients. The deletions were analyzed by MLPA and array CGH. Results: All patients exhibited the core clinical symptoms of WHS, including severe growth delay, a Greek warrior helmet facial appearance, differing degrees of intellectual disability, and epilepsy or electroencephalogram anomalies. The 4p deletions ranged from 2.62 Mb to 17.25 Mb in size and included LETM1, WHSC1, and FGFR3. Conclusions: The combined use of MLPA and array CGH is an effective and specific means to diagnose WHS and allows for the precise identification of the breakpoints and sizes of deletions. The deletion of genes in the WHS candidate region is closely correlated with the core WHS phenotype. PMID:26960370

  17. Deuterium trapping and release in JET ITER-like wall divertor tiles

    NASA Astrophysics Data System (ADS)

    Likonen, J.; Heinola, K.; De Backer, A.; Koivuranta, S.; Hakola, A.; Ayres, C. F.; Baron-Wiechec, A.; Coad, P.; Matthews, G. F.; Mayer, M.; Widdowson, A.; Contributors, JET

    2016-02-01

    A selected set of samples from JET-ILW divertor tiles exposed in 2011-2012 has been analysed using thermal desorption spectrometry (TDS). The highest amount of deuterium was found on the regions with the thickest deposited layers, i.e. on the horizontal (apron) part and on the top part of Tile 1, which resides deep in the scrape-off layer. Outer divertor Tiles 6, 7 and 8 had nearly an order of magnitude less deuterium. The co-deposited layers on the JET tiles and the W coatings contain C, O and Ni impurities which may change the desorption properties. The D2 signals in the TDS spectra were convoluted and the positions of the peaks were compared with the Be and C amounts but no correlations between them were found. The remaining fractions of D in the analysed samples at ITER baking temperature 350 °C are rather high implying that co-deposited films may be difficult to be de-tritiated.

  18. Study of the Pulse Shapes from the 3-in-1 Cards at ATLAS TileCal

    NASA Astrophysics Data System (ADS)

    Cheng, Y.; Dunford, M.; Kim, Y. K.

    2010-02-01

    The ATLAS Tile Calorimeter (TileCal) is designed to measure energy depositions in a single cell from 30 MeV to 2 TeV, and we expect to calibrate its response to 1-2%. We present studies of pulse shapes from the front-end electronics of the TileCal and infer their impact on minimum bias pile-up events, especially at high luminosity. High and low gain signals were obtained from both CERN and the University of Chicago test benches, using both the charge injection system and LED. In our studies, we quantify pulse-shapes and undershoot, measure card-to-card variations, and then compare these pulse shapes to the reference shapes used in ATLAS simulation. By running the TileCal pulse shape reconstruction using both the standard shapes in simulation and the shapes from test bench measurements, we are able to investigate the sensitivity of the reconstruction procedure to differences in pulse shape. )

  19. Evaluation of angle dependence in spectral emissivity of ceramic tiles measured by FT-IR

    NASA Astrophysics Data System (ADS)

    Kobayashi, C.; Ogasawara, N.; Yamada, H.; Yamada, S.; Kikuchi, T.

    2015-05-01

    Ceramic tiles are widely used for building walls. False detections are caused in inspections by infrared thermography because of the infrared reflection and angle dependence of emissivity. As the first problem, ceramic tile walls are influenced from backgrounds reflection. As the second problem, in inspection for tall buildings, the camera angles are changed against the height. Thus, to reveal the relation between the emissivity and angles is needed. However, there is very little data about it. It is impossible to decrease the false detection on ceramic tile walls without resolving these problems; background reflection and angle dependence of emissivity. In this study, the angle problem was investigated. The purpose is to establish a revision method in the angle dependence of the emissivity for infrared thermography. To reveal the relation between the emissivity and angles, the spectral emissivity of a ceramic tile at various angles was measured by FT-IR and infrared thermographic instrument. These two experimental results were compared with the emissivity-angle curves from the theoretical formula. In short wavelength range, the two experimental results showed similar behavior, but they did not agree with the theoretical curve. This will be the subject of further study. In long wavelength range, the both experimental results almost obeyed the theoretical curve. This means that it is possible to revise the angle dependence of spectral emissivity, for long wavelength range.

  20. Symmetries and color symmetries of a family of tilings with a singular point.

    PubMed

    Evidente, Imogene F; Felix, Rene P; Loquias, Manuel Joseph C

    2015-11-01

    Tilings with a singular point are obtained by applying conformal maps on regular tilings of the Euclidean plane and their symmetries are determined. The resulting tilings are then symmetrically colored by applying the same conformal maps on colorings of regular tilings arising from sublattice colorings of the centers of the tiles. In addition, conditions are determined in order that the coloring of a tiling with singularity that is obtained in this manner is perfect. PMID:26522407

  1. Computerized Machine for Cutting Space Shuttle Thermal Tiles

    NASA Technical Reports Server (NTRS)

    Ramirez, Luis E.; Reuter, Lisa A.

    2009-01-01

    A report presents the concept of a machine aboard the space shuttle that would cut oversized thermal-tile blanks to precise sizes and shapes needed to replace tiles that were damaged or lost during ascent to orbit. The machine would include a computer-controlled jigsaw enclosed in a clear acrylic shell that would prevent escape of cutting debris. A vacuum motor would collect the debris into a reservoir and would hold a tile blank securely in place. A database stored in the computer would contain the unique shape and dimensions of every tile. Once a broken or missing tile was identified, its identification number would be entered into the computer, wherein the cutting pattern associated with that number would be retrieved from the database. A tile blank would be locked into a crib in the machine, the shell would be closed (proximity sensors would prevent activation of the machine while the shell was open), and a "cut" command would be sent from the computer. A blade would be moved around the crib like a plotter, cutting the tile to the required size and shape. Once the tile was cut, an astronaut would take a space walk for installation.

  2. Highly Symmetric and Congruently Tiled Meshes for Shells and Domes

    PubMed Central

    Rasheed, Muhibur; Bajaj, Chandrajit

    2016-01-01

    We describe the generation of all possible shell and dome shapes that can be uniquely meshed (tiled) using a single type of mesh face (tile), and following a single meshing (tiling) rule that governs the mesh (tile) arrangement with maximal vertex, edge and face symmetries. Such tiling arrangements or congruently tiled meshed shapes, are frequently found in chemical forms (fullerenes or Bucky balls, crystals, quasi-crystals, virus nano shells or capsids), and synthetic shapes (cages, sports domes, modern architectural facades). Congruently tiled meshes are both aesthetic and complete, as they support maximal mesh symmetries with minimal complexity and possess simple generation rules. Here, we generate congruent tilings and meshed shape layouts that satisfy these optimality conditions. Further, the congruent meshes are uniquely mappable to an almost regular 3D polyhedron (or its dual polyhedron) and which exhibits face-transitive (and edge-transitive) congruency with at most two types of vertices (each type transitive to the other). The family of all such congruently meshed polyhedra create a new class of meshed shapes, beyond the well-studied regular, semi-regular and quasi-regular classes, and their duals (platonic, Catalan and Johnson). While our new mesh class is infinite, we prove that there exists a unique mesh parametrization, where each member of the class can be represented by two integer lattice variables, and moreover efficiently constructable. PMID:27563368

  3. Improving Efficiency of 3-SAT-Solving Tile Systems

    NASA Astrophysics Data System (ADS)

    Brun, Yuriy

    The tile assembly model has allowed the study of the nature's process of self-assembly and the development of self-assembling systems for solving complex computational problems. Research into this model has led to progress in two distinct classes of computational systems: Internet-sized distributed computation, such as software architectures for computational grids, and molecular computation, such as DNA computing. The design of large complex tile systems that emulate Turing machines has shown that the tile assembly model is Turing universal, while the design of small tile systems that implement simple algorithms has shown that tile assembly can be used to build private, fault-tolerant, and scalable distributed software systems and robust molecular machines. However, in order for these types of systems to compete with traditional computing devices, we must demonstrate that fairly simple tile systems can implement complex and intricate algorithms for important problems. The state of the art, however, requires vastly complex tile systems with large tile sets to implement such algorithms.

  4. Glazed tiles manufactured from incinerated sewage sludge ash and clay.

    PubMed

    Lin, Deng-Fong; Luo, Huan-Lin; Sheen, Yeong-Nain

    2005-02-01

    Sewage sludge incineration is applied extensively in highly populated cities as a final sludge treatment. In this study, incinerated ash was utilized as an additive to clay to manufacture glaze tiles. Four different amounts of ash (0, 15, 30, and 45%) were added, and five glaze concentrations (0.03, 0.06, 0.1, 0.15, and 0.2 g/cm2) were applied on the surface of biscuit tiles to study the effects of ash additive and glaze concentration on properties of fired samples. Sewage sludge was dehydrated and incinerated into ash at 800 degrees C. Subsequently, tile specimens were manufactured and fired at 800 degrees C to make biscuit tiles. Fritted glazes and iron oxide were used as the fundamental glaze and colorant, respectively. Finally, glaze was applied on the surface of biscuit tiles and then fired at 1050 degrees C to sinter them into glazed tile specimens. Tests were performed to analyze properties, including water absorption, firing shrinkage, weight loss on ignition, abrasion resistance, bending resistance, acid-alkali resistance, and aging resistance on specimens of glaze tile. To further understand more about the microstructural behavior of glazed tile specimens, analysis of energy dispersive spectrometer, scanning electron microscopy, and X-ray were carried out in this study.

  5. New SWAT tile drain equations: Modifications, Calibration, Validation, and Application

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Subsurface tile drainage is a commonly used agricultural practice to enhance crop yield in poorly drained but highly productive soils in many other regions of the world. However, the presence of subsurface tile drainage systems also expedites the transport of nitrate-nitrogen (NO3-N) and other chemi...

  6. 81. MORAVIAN POTTERY AND TILE WORKS, VIEW FROM THE SOUTHWEST. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    81. MORAVIAN POTTERY AND TILE WORKS, VIEW FROM THE SOUTHWEST. INDIAN HOUSE WING AT THE LEFT. SAME VIEW AS PA-107-2. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  7. 80. KILN AT FIRST MORAVIAN POTTERY AND TILE WORKS AT ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    80. KILN AT FIRST MORAVIAN POTTERY AND TILE WORKS AT ALDIE, 1901. PHOTOGRAPH PUBLISHED IN HOUSE AND GARDEN. AUGUST 1901, p. 19. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  8. Drainage water management effects on tile discharge and water quality

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Nitrogen (N) fluxes from tile drained watersheds have been implicated in water quality studies of the Mississippi River Basin, but the contribution of tile drains to N export in headwater watersheds is not well understood. The objective of this study was to ascertain seasonal and annual contribution...

  9. Nutrient and Pesticide Removal From Laboratory Simulated Tile Drainage Discharge

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Excess nutrient and pesticide transport through subsurface tile drainage is well documented. One approach receiving consideration for reducing the amount of nutrients and pesticides in subsurface drainage waters is end-of-tile filters. The filters are often comprised of industrial wastes or by-produ...

  10. Creative Tiling: A Story of 1000-and-1 Curves

    ERIC Educational Resources Information Center

    Al-Darwish, Nasir

    2012-01-01

    We describe a procedure that utilizes symmetric curves for building artistic tiles. One particular curve was found to mesh nicely with hundreds other curves, resulting in eye-catching tiling designs. The results of our work serve as a good example of using ideas from 2-D graphics and algorithms in a practical web-based application.

  11. Low-Density, Aerogel-Filled Thermal-Insulation Tiles

    NASA Technical Reports Server (NTRS)

    Santos, Maryann; Heng, Vann; Barney, Andrea; Oka, Kris; Droege, Michael

    2005-01-01

    Aerogel fillings have been investigated in a continuing effort to develop low-density thermal-insulation tiles that, relative to prior such tiles, have greater dimensional stability (especially less shrinkage), equal or lower thermal conductivity, and greater strength and durability. In preparation for laboratory tests of dimensional and thermal stability, prototypes of aerogel-filled versions of recently developed low-density tiles have been fabricated by impregnating such tiles to various depths with aerogel formations ranging in density from 1.5 to 5.6 lb/ft3 (about 53 to 200 kg/cu m). Results available at the time of reporting the information for this article showed that the thermal-insulation properties of the partially or fully aerogel- impregnated tiles were equivalent or superior to those of the corresponding non-impregnated tiles and that the partially impregnated tiles exhibited minimal (<1.5 percent) shrinkage after multiple exposures at a temperature of 2,300 F (1,260 C). Latest developments have shown that tiles containing aerogels at the higher end of the density range are stable after multiple exposures at the said temperature.

  12. Buffet loads on shuttle thermal-protection-system tiles

    NASA Technical Reports Server (NTRS)

    Coe, C. F.

    1982-01-01

    Results of wind-tunnel and acoustic tests to investigate buffet loads on Shuttle Thermal-Protection-System (TPS) tiles are given. Also described is the application of these results to the prediction of tile buffet loads for the first shuttle flight into orbit. The wind-tunnel tests of tiles were conducted at transonic and supersonic Mach numbers simulating flow regions on the Orbiter where shock waves and boundary-layer separations occur. The acoustic tests were conducted in a progressive wave tube at an overall sound pressure level (OASPL) approximately equal to the maximum OASPL measured during the wind-tunnel tests in a region of flow separation. The STS-1 buffet load predictions yielded peak tile stresses due to buffeting that were as much as 20 percent of the total stress for the design-load case when a shock wave was on a tile.

  13. Improved Titanium Billet Inspection Sensitivity through Optimized Phased Array Design, Part II: Experimental Validation and Comparative Study with Multizone

    SciTech Connect

    Hassan, W.; Vensel, F.; Knowles, B.

    2006-03-06

    The inspection of critical rotating components of aircraft engines has made important advances over the last decade. The development of Phased Array (PA) inspection capability for billet and forging materials used in the manufacturing of critical engine rotating components has been a priority for Honeywell Aerospace. The demonstration of improved PA inspection system sensitivity over what is currently used at the inspection houses is a critical step in the development of this technology and its introduction to the supply base as a production inspection. As described in Part I (in these proceedings), a new phased array transducer was designed and manufactured for optimal inspection of eight inch diameter Ti-6Al-4V billets. After confirming that the transducer was manufactured in accordance with the design specifications a validation study was conducted to assess the sensitivity improvement of the PAI over the current capability of Multi-zone (MZ) inspection. The results of this study confirm the significant ({approx_equal} 6 dB in FBH number sign sensitivity) improvement of the PAI sensitivity over that of MZI.

  14. Effect of liquid municipal biosolid application method on tile and ground water quality.

    PubMed

    Lapen, D R; Topp, E; Edwards, M; Sabourin, L; Curnoe, W; Gottschall, N; Bolton, P; Rahman, S; Ball-Coelho, B; Payne, M; Kleywegt, S; McLaughlin, N

    2008-01-01

    This study examined bacteria and nutrient quality in tile drainage and shallow ground water resulting from a fall land application of liquid municipal biosolids (LMB), at field application rates of 93,500 L ha(-1), to silt-clay loam agricultural field plots using two different land application approaches. The land application methods were a one-pass AerWay SSD approach (A), and surface spreading plus subsequent incorporation (SS). For both treatments, it took between 3 and 39 min for LMB to reach tile drains after land application. The A treatment significantly (p < 0.1) reduced application-induced LMB contamination of tile drains relative to the SS treatment, as shown by mass loads of total Kjeldahl N (TKN), NH(4)-N, Total P (TP), PO(4)-P, E. coli., and Clostridium perfringens. E. coli contamination resulting from application occurred to at least 2.0-m depth in ground water, but was more notable in ground water immediately beneath tile depth (1.2 m). Treatment ground water concentrations of selected nutrients and bacteria for the study period ( approximately 46 d) at 1.2-m depth were significantly higher in the treatment plots, relative to control plots. The TKN and TP ground water concentrations at 1.2-m depth were significantly (p < 0.1) higher for the SS treatment, relative to the A treatment, but there were no significant (p > 0.1) treatment differences for the bacteria. For the macroporous field conditions observed, pre-tillage by equipment such as the AerWay SSD, will reduce LMB-induced tile and shallow ground water contamination compared to surface spreading over non-tilled soil, followed by incorporation.

  15. Energy-efficient specialization of functional units in a Coarse-Grained Reconfigurable Array

    SciTech Connect

    Van Essen, B; Panda, R; Wood, A; Ebeling, C; Hauck, S

    2010-12-01

    Functional units provide the backbone of any spatial accelerator by providing the computing resources. The desire for having rich and expensive functional units is in tension with producing a regular and energy-efficient computing fabric. This paper explores the design trade-off between complex, universal functional units and simpler, limited functional units. We show that a modest amount of specialization reduces the area-delay-energy product of an optimized architecture to 0.86x a baseline architecture. Furthermore, we provide a design guideline that allows an architect to customize the contents of the computing fabric just by examining the profile of benchmarks within the application domains. Functional units are the core of compute-intensive spatial accelerators. They perform the computation of interest with support from local storage and communication structures. Ideally, the functional units will provide rich functionality, supporting operations ranging from simple addition, to fused multiply-adds, to advanced transcendental functions and domain specific operations like add-compare-select. However, the total opportunity cost to support the more complex operations is a function of the cost of the hardware, the rate of occurrence of the operation in the application domain, and the inefficiency of emulating the operation with simpler operators. Examples of operations that are typically emulated in spatial accelerators are division and trigonometric functions, which can be solved using table-lookup based algorithms and the CORDIC algorithm. One reason to avoid having direct hardware support for complex operations in a tiled architecture like a Coarse-Grained Reconfigurable Array (CGRA) is that the expensive hardware will typically need to be replicated in some or all of the architecture's tiles. Tiled architecture are designed such that their tiles are either homogeneous or heterogeneous. Homogeneous architectures are simpler to design but heterogeneous

  16. Tile-in-ONE: A web platform which integrates Tile Calorimeter data quality and calibration assessment

    NASA Astrophysics Data System (ADS)

    Sivolella, A.; Ferreira, F.; Maidantchik, C.; Solans, C.; Solodkov, A.; Burghgrave, B.; Smirnov, Y.

    2015-12-01

    The ATLAS Tile Calorimeter collaboration assesses the quality of calibration data in order to ensure its proper operation. A number of tasks is then performed by executing several tools and accessing web systems, which were independently developed to meet distinct collaboration's requirements and do not necessarily are connected with each other. Thus, to attend the collaboration needs, several programs are usually implemented without a global perspective of the detector, requiring basic software features. In addition, functionalities may overlap in their objectives and frequently replicate resources retrieval mechanisms. Tile-in-ONE is a designed and implemented platform that assembles various web systems used by the calorimeter community through a single framework and a standard technology. It provides an infrastructure to support the code implementation, avoiding duplication of work while integrating with an overall view of the detector status. Database connectors smooth the process of information access since developers do not need to be aware of where records are placed and how to extract them. Within the environment, a dashboard stands for a particular Tile operation aspect and gets together plug-ins, i.e. software components that add specific features to an existing application. A server contains the platform core, which represents the basic environment to deal with the configuration, manage user settings and load plug-ins at runtime. A web middleware assists users to develop their own plug-ins, perform tests and integrate them into the platform as a whole. Backends are employed to allow that any type of application is interpreted and displayed in a uniform way. This paper describes Tile-in-ONE web platform.

  17. Floor tile and mastic removal project report

    SciTech Connect

    Not Available

    1992-11-01

    A test program was developed and coordinated with State and Federal Regulators and carried out at Fort Sill, Oklahoma. This program was carefully designed to create the worst conditions in order to evaluate whether asbestos fibers are released when asbestos containing floor tile and mastic are removed. There were over 1,000 samples taken and analyzed during the execution of the program. The conclusions reached were based upon analysis of the critical samples using the Transmission Electron Microscope (TEM) technology. Additionally, the TEM procedures were used to evaluate personnel samples to determine whether those fibers found were asbestos or other materials. Most of the (TEM) samples were analyzed by the US Environmental Protection Agency (EPA) Risk Reduction Engineering Laboratory in Cincinnati, Ohio.

  18. Local growth of icosahedral quasicrystalline tilings

    NASA Astrophysics Data System (ADS)

    Hann, Connor T.; Socolar, Joshua E. S.; Steinhardt, Paul J.

    2016-07-01

    Icosahedral quasicrystals (IQCs) with extremely high degrees of translational order have been produced in the laboratory and found in naturally occurring minerals, yet questions remain about how IQCs form. In particular, the fundamental question of how locally determined additions to a growing cluster can lead to the intricate long-range correlations in IQCs remains open. In answer to this question, we have developed an algorithm that is capable of producing a perfectly ordered IQC yet relies exclusively on local rules for sequential, face-to-face addition of tiles to a cluster. When the algorithm is seeded with a special type of cluster containing a defect, we find that growth is forced to infinity with high probability and that the resultant IQC has a vanishing density of defects. The geometric features underlying this algorithm can inform analyses of experimental systems and numerical models that generate highly ordered quasicrystals.

  19. Solar Array Arcing Failure Mode and High Voltage Array Testing

    NASA Astrophysics Data System (ADS)

    Ferguson, Dale C.

    2002-10-01

    In 1998, a new failure mode for space solar arrays was discovered. A flowchart for this failure mode is presented. Since the discovery of this arc failure mode, many tactics have been used to defeat it. The arc thresholds and arc mitigation strategies must be determined in vacuum-plasma tank testing on Earth. Results from these tests must then be extrapolated to the space plasma environment. Thus, the test conditions on Earth must be adequate to reproduce the important aspects of the phenomenon in space. At Glenn Research Center, we have been testing solar arrays for their arc thresholds and sustained arcing thresholds. In this paper, we detail the test conditions for a specific set of tests-those aimed at qualifying the Boeing Solar Tile solar arrays to operate in space at very high voltages (300 V or more).

  20. Coal fly ash utilization: low temperature sintering of wall tiles.

    PubMed

    Chandra, Navin; Sharma, Priya; Pashkov, G L; Voskresenskaya, E N; Amritphale, S S; Baghel, Narendra S

    2008-01-01

    We present here a study of the sintering of fly ash and its mixture with low alkali pyrophyllite in the presence of sodium hexa meta phosphate (SHMP), a complex activator of sintering, for the purpose of wall tile manufacturing. The sintering of fly ash with SHMP in the temperature range 925-1050 degrees C produces tiles with low impact strength; however, the incremental addition of low alkali pyrophyllite improves impact strength. The impact strength of composites with >or=40% (w/w) pyrophyllite in the fly ash-pyrophyllite mix satisfies the acceptable limit (19.6 J/m) set by the Indian Standards Institute for wall tiles. Increasing the pyrophyllite content results in an increase in the apparent density of tiles, while shrinkage and water absorption decrease. The strength of fly ash tiles is attributed to the formation of a silicophosphate phase; in pyrophyllite rich tiles, it is attributed to the formation of a tridymite-structured T-AlPO(4) phase. Scanning electron micrographs show that the reinforcing rod shaped T-AlPO(4) crystals become more prominent as the pyrophyllite content increases in the sintered tiles.

  1. Next-Generation Microshutter Arrays for Large-Format Imaging and Spectroscopy

    NASA Technical Reports Server (NTRS)

    Moseley, Samuel; Kutyrev, Alexander; Brown, Ari; Li, Mary

    2012-01-01

    A next-generation microshutter array, LArge Microshutter Array (LAMA), was developed as a multi-object field selector. LAMA consists of small-scaled microshutter arrays that can be combined to form large-scale microshutter array mosaics. Microshutter actuation is accomplished via electrostatic attraction between the shutter and a counter electrode, and 2D addressing can be accomplished by applying an electrostatic potential between a row of shutters and a column, orthogonal to the row, of counter electrodes. Microelectromechanical system (MEMS) technology is used to fabricate the microshutter arrays. The main feature of the microshutter device is to use a set of standard surface micromachining processes for device fabrication. Electrostatic actuation is used to eliminate the need for macromechanical magnet actuating components. A simplified electrostatic actuation with no macro components (e.g. moving magnets) required for actuation and latching of the shutters will make the microshutter arrays robust and less prone to mechanical failure. Smaller-size individual arrays will help to increase the yield and thus reduce the cost and improve robustness of the fabrication process. Reducing the size of the individual shutter array to about one square inch and building the large-scale mosaics by tiling these smaller-size arrays would further help to reduce the cost of the device due to the higher yield of smaller devices. The LAMA development is based on prior experience acquired while developing microshutter arrays for the James Webb Space Telescope (JWST), but it will have different features. The LAMA modular design permits large-format mosaicking to cover a field of view at least 50 times larger than JWST MSA. The LAMA electrostatic, instead of magnetic, actuation enables operation cycles at least 100 times faster and a mass significantly smaller compared to JWST MSA. Also, standard surface micromachining technology will simplify the fabrication process, increasing

  2. 57. ORIGINAL TILE PRESS AND EXPERIMENTAL DENTAL KILN, SECOND FLOOR, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    57. ORIGINAL TILE PRESS AND EXPERIMENTAL DENTAL KILN, SECOND FLOOR, NORTH WING, HENRY MERCER USED THE KILN FOR HIS EARLIEST GLAZE TESTS. THE PRESS WAS DESIGNED TO BE USED WITH METAL CASED MOLDS. SINCE ONLY THE EARLIEST TILE DESIGNS ARE IN METAL CASES. THIS TECHNIQUE WAS PROBABLY DISCONTINUED. THIS PRESS WAS, THEREFORE, PROBABLY NOT USED EXTENSIVELY AT THIS SITE. THE UPPER PART OF GLAZE KILN No. 2 IS AT THE LEFT REAR. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  3. Intrinsic DNA curvature of double-crossover tiles.

    PubMed

    Kim, Seungjae; Kim, Junghoon; Qian, Pengfei; Shin, Jihoon; Amin, Rashid; Ahn, Sang Jung; LaBean, Thomas H; Kim, Moon Ki; Park, Sung Ha

    2011-06-17

    A theoretical model which takes into account the structural distortion of double-crossover DNA tiles has been studied to investigate its effect on lattice formation sizes. It has been found that a single vector appropriately describes the curvature of the tiles, of which a higher magnitude hinders lattice growth. In conjunction with these calculations, normal mode analysis reveals that tiles with relative higher frequencies have an analogous effect. All the theoretical results are shown to be in good agreement with experimental data. PMID:21543827

  4. Hypervelocity impact testing of Shuttle Orbiter thermal protection system tiles

    NASA Technical Reports Server (NTRS)

    Christiansen, Eric L.; Ortega, Javier

    1990-01-01

    Results are presented from a series of 22 hypervelocity impact tests carried out on the thermal protection system (TPS) for the Shuttle Orbiter. Both coated and uncoated low-density (0.14 g/cu cm) LI-900 and high-density (0.35 g/cu cm) LI-2200 tiles were tested. The results are used to develop the penetration and damage correlations which can be used in meteoroid and debris hazard analyses for spacecraft with a ceramic tile TPS. It is shown that tile coatings act as a 'bumper' to fragment the impacting projectile, with thicker coating providing increased protection.

  5. Can bladder adenocarcinomas be distinguished from schistosomiasis-associated bladder cancers by using array comparative genomic hybridization analysis?

    PubMed

    Vauhkonen, Hanna; Böhling, Tom; Eissa, Saad; Shoman, Sohair; Knuutila, Sakari

    2007-09-01

    Bladder cancer is the most common malignancy in many tropical and subtropical areas, correlating well with the endemicity of schistostomiasis. The majority of schistostomiasis-associated (SA) bladder cancers are squamous cell cancers, whereas the majority of non-SA cases in the Western world are transitional cell cancers, suggesting different carcinogenetic mechanisms. Approximately 6% of SA and 1% of non-SA cases are adenocarcinomas. To achieve fine-resolution information of DNA copy number changes in SA adenocarcinomas, 10 tumor samples were analyzed on an oligonucleotide-based CGH array. The frequency of aberrations ranged from 2 to 17, with an average of 10 alterations per sample. The most frequently gained regions were 20q and 8q (in 70 and 60% of the cases, respectively), whereas the most frequently lost regions were 5q and 8p (both in 40% of the cases). In addition, six regions of amplification were found in three samples, containing both well characterized and novel regions. Comparison of the DNA copy number profiles to previously reported profiles of SA transitional cell carcinoma and squamous cell carcinoma revealed similarities (e.g., gains at 5p and 8q), as well as differences (e.g., TCC- and SCC-associated losses at 18p and 20p, and adenocarcinoma-associated gains at 20q). The results suggest that although SA cancers share genetic features, there also exist histology-specific regions of gain and loss. PMID:17854674

  6. Geant4 hadronic physics validation with ATLAS Tile Calorimeter test-beam data

    NASA Astrophysics Data System (ADS)

    Alexa, C.; Constantinescu, S.; DiÅ£ǎ, S.

    2006-10-01

    We present comparison studies between Geant4 shower packages and ATLAS Tile Calorimeter test-beam data collected at CERN in H8 beam line at the SPS. Emphasis is put on hadronic physics lists and data concerning differences between Tilecal response to pions and protons of same energy. The ratio between the pure hadronic fraction of pion and the pure hadronic fraction of proton Fhπ/Fhp was estimated with Tilecal test-beam data and compared with Geant4 simulations.

  7. Thermal modeling of a metallic thermal protection tile for entry vehicles

    NASA Technical Reports Server (NTRS)

    Wiese, M. R.

    1986-01-01

    The thermal Energy Flow Simulation (TEFS) computer program was developed to simulate transient heat transfer through composite solids and predict interfacial temperatures. The program and its usage are described. A simulation of the thermal response of a new thermal protection tile design for the Space Shuttle Orbiter is presented and graphically compared with actual data. An example is also provided which shows the program's usage as a design tool for theoretical models.

  8. A comparative study of microstructures on the photoelectric properties of tungsten trioxide films with plate-like arrays

    NASA Astrophysics Data System (ADS)

    Yang, Chaoqun; Zhu, Qiang; Zhang, Shunping; Zou, Zhijun; Tian, Kuan; Xie, Changsheng

    2014-04-01

    WO3 plate-like array film was grown on the FTO electrodes by a simple hydrothermal method. In order to change the microstructures of the WO3 films, the as-grown films were further post-heat treated in air and in H2, respectively. The photoresponse characteristics of the as-prepared WO3 films are investigated in the gas phase, and to explain the slow decay of the photocurrent of WO3, the electron trapping effect is proposed. We found that both of the phase structures and oxygen vacancies had great influences on the photoresponse characteristics of WO3 films. For the three WO3 films, the photocurrent decreased significantly with the distortion of the octahedra which were the building blocks of the various crystal structures and with the decreasing of oxygen vacancy concentration. The untreated-WO3 shows 2.5 times higher photocurrent intensity than hydrogen-treated WO3 and the hydrogen-treated WO3 shows 17 times higher photocurrent intensity than air-treated WO3. The experimental results revealed the influence of phase structure on the photoelectric performance of WO3 was far greater than that of oxygen vacancy. We also found that the hydrogen-treated WO3 exhibited excellent infrared photoresponse property, which was 20 times higher than that of the pristine WO3. This was attributed to the existing large number of oxygen vacancies yielding extended energy states which often formed a continuum extending to and overlapping with the conduction band (CB) edge.

  9. Torsional Buckling Tests of a Simulated Solar Array

    NASA Technical Reports Server (NTRS)

    Thornton, E. A.

    1996-01-01

    Spacecraft solar arrays are typically large structures supported by long, thin deployable booms. As such, they may be particularly susceptible to abnormal structural behavior induced by mechanical and thermal loading. One example is the Hubble Space Telescope solar arrays which consist of two split tubes fit one inside the other called BiSTEMs. The original solar arrays on the Hubble Space Telescope were found to be severely twisted following deployment and later telemetry data showed the arrays were vibrating during daylight to night and night to daylight transition. The solar array twist however can force the BiSTEM booms to change in cross-section and cause tile solar arrays to react unpredictably to future loading. The solar arrays were redesigned to correct for tile vibration, however, upon redeployment they again twisted. To assess the influence of boom cross-sectional configuration, experiments were conducted on two types of booms, (1)booms with closed cross-sections, and (2) booms with open cross-sections. Both models were subjected to compressive loading and imposed tip deflections. An existing analytical model by Chung and Thornton was used to define the individual load ranges for each model solar array configuration. The load range for the model solar array using closed cross-section booms was 0-120 Newtons and 0-160 Newtons for the model solar array using open cross-section booms. The results indicate the model solar array with closed cross-section booms buckled only in flexure. However, the results of the experiment with open cross-section booms indicate the model solar array buckled only in torsion and with imposed tip deflections the cross section can degrade by rotation of the inner relative to the outer STEM. For tile Hubble Space Telescope solar arrays the results of these experiments indicate the twisting resulted from the initial mechanical loading of the open cross-section booms.

  10. [Genomic abnormalities in children with mental retardation and autism: the use of comparative genomic hybridization in situ (HRCGH) and molecular karyotyping with DNA-microchips (array CGH)].

    PubMed

    Vorsanova, S G; Iurov, I Iu; Kurinnaia, O S; Voinova, V Iu; Iurov, Iu B

    2013-01-01

    Genomic abnormalities occur with high frequency in children with mental retardation and autistic spectrum disorders (ADS). Molecular karyotyping using DNA microarrays is a new technology for diagnosis of genomic and chromosomal abnormalities in autism implemented in the fields of biological psychiatry and medical genetics. We carried out a comparative analysis of the frequency and spectrum of genome abnormalities in children with mental retardation and autism of unknown etiology using high-resolution comparative genomic methods for hybridization (HRCGH) and molecular karyotyping (array CGH). In a study of 100 children with autism, learning difficulties and congenital malformations by HRCGH, we identified genomic rearrangements in 46% of cases. Using array CGH we examined 50 children with autism. In 44 cases out of 50 (88%), different genomic abnormalities and genomic variations (CNV - copy number variations) were identified. Unbalanced genomic rearrangements, including deletions and duplications, were found in 23 cases out of 44 (52%). These data suggest that genomic abnormalities which are not detectable by common methods of chromosome analysis are often discovered by molecular cytogenetic techniques in children autism spectrum disorders. In addition, 54 children with idiopathic mental retardation and congenital malformations (31 boys and 23 girls) without autism spectrum disorders were examined using molecular karyotyping and microarray containing an increased number of DNA samples for genomic loci of chromosome X. Deletions and duplications affecting different regions of the chromosome X were detected in 11 out of 54 children (20.4%).

  11. Effect of acid vapor etching on morphological and opto-electric properties of flat silicon and silicon nanowire arrays: A comparative study

    NASA Astrophysics Data System (ADS)

    Amri, Chohdi; Ouertani, Rachid; Hamdi, Abderrahmen; Ezzaouia, Hatem

    2016-03-01

    In this paper, we report a comparative study between porous silicon (pSi) and porous silicon nanowires (pSiNWs). Acid Vapor Etching (AVE) treatment has been used to perform porous structure on flat Si and SiNWs array substrates respectively. SiNW structure is prepared by the widely used Silver catalyzed etching method. SEM and TEM images show that AVE treatment induces porous structure in the whole Si wafer and the SiNW sidewall. Comparatively to pSi, pSiNWs exhibit a low reflectivity in the whole spectral range which decreases with etching duration. However, the reflectivity of pSi changes with porous layer thickness. Both pSi and pSiNWs exhibit a significant PL peak situated at 2 eV. PL peaks are attributed to the quantum confinement effect in the silicon nanocrystallites (SiNCs). We discussed the significant enhancement in the peak intensities and a shift toward lower energy displayed in Raman spectra for both pSi and pSiNWs. We reported a correlative study of the AVE treatment effect on the minority carrier life time of flat silicon and SiNW arrays with the passivation effect of chemical induced silicon oxides highlighted by FTIR spectra.

  12. 35. DETAIL INTERIOR VIEW OF TILE DECORATION ON WALL OF ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    35. DETAIL INTERIOR VIEW OF TILE DECORATION ON WALL OF POWERHOUSE #1 ON LEVEL +55; THE WINDOWS LOOK OUT ON DISCHARGE CHANNEL DOWNSTREAM FROM POWERHOUSE. - Bonneville Project, Powerhouse No.1, Spanning Bradford Slough, from Bradford Island, Bonneville, Multnomah County, OR

  13. 25. CAFETERIA Note remains of tile floor in foreground. Food ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    25. CAFETERIA Note remains of tile floor in foreground. Food cooked on the stove was served to workers in the eating area to the left of the counter (off picture). - Hovden Cannery, 886 Cannery Row, Monterey, Monterey County, CA

  14. South front, west part, showing wrought iron gates and tiling ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    South front, west part, showing wrought iron gates and tiling at the former main entrance. - San Bernardino Valley College, Life Science Building, 701 South Mount Vernon Avenue, San Bernardino, San Bernardino County, CA

  15. 44. Everett Weinreb, photographer DETAIL, CEMENT TILE PATTERN, FROM LOGGIA ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    44. Everett Weinreb, photographer DETAIL, CEMENT TILE PATTERN, FROM LOGGIA LOOKING EAST ACROSS RECEPTION HALL - Los Angeles Union Passenger Terminal, Tracks & Shed, 800 North Alameda Street, Los Angeles, Los Angeles County, CA

  16. 45. Everett, Weinreb, photographer DETAIL, CEMENT TILE PATTERN FROM RECEPTION ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    45. Everett, Weinreb, photographer DETAIL, CEMENT TILE PATTERN FROM RECEPTION HALL LOOKING EAST ACROSS ARRIVAL LOBBY FLOOR - Los Angeles Union Passenger Terminal, Tracks & Shed, 800 North Alameda Street, Los Angeles, Los Angeles County, CA

  17. 24. DETAIL VIEW OF TILE GAUGE IN INTERMEDIATE LOCK WALL, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    24. DETAIL VIEW OF TILE GAUGE IN INTERMEDIATE LOCK WALL, LOOKING NORTHEAST. NOTE STEEL WALL ARMOR EMBEDDED IN CONCRETE. - Upper Mississippi River 9-Foot Channel Project, Lock & Dam 26, Alton, Madison County, IL

  18. VIEW OF COMPASS ROSE TILE INLAY IN FLOOR OF LOBBY, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    VIEW OF COMPASS ROSE TILE INLAY IN FLOOR OF LOBBY, BUILDING 1, LOOKING SOUTHEAST - Roosevelt Base, Administration & Brig Building, Bounded by Nevada & Colorado Streets, Reeves & Richardson Avenues, Long Beach, Los Angeles County, CA

  19. Detail of first floor of loading dock showing composition tile ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Detail of first floor of loading dock showing composition tile over wood floor/basement ceiling - Southern Pacific Railroad Depot, Railroad Terminal Post Office & Express Building, Fifth & I Streets, Sacramento, Sacramento County, CA

  20. INTERIOR VIEW OF BATHROOM 2. SHOWING ORIGINAL TILE. CERAMIC ACCESSORIES, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    INTERIOR VIEW OF BATHROOM 2. SHOWING ORIGINAL TILE. CERAMIC ACCESSORIES, AND MARBLE THRESHOLD. VIEW FACING EAST. - Hickam Field, Officers' Housing Type G, 205 Seventh Street, Honolulu, Honolulu County, HI

  1. Self-glazing ceramic tiles based on acidic igneous glasses

    SciTech Connect

    Merkin, A.P.; Nanazashvili, V.I.

    1988-07-01

    A technology was derived to produce self-glazing ceramic tiles based on single-component systems of acidic igneous (volcanic) glasses. A weakly alkaline solution of NaOH or KOH was used as the sealing water to activate the sintering process. Tests conducted on the self-glazing ceramic tiles showed that their water absorption amounts to 2.5-8%, linear shrinkage is 3.2-7%, and frost resistance amounts to 35-70 cycles. The application of acidic igneous glasses as the main raw material for the production of ceramic facing tiles made it possible to widen the raw material base and simplify the technology for fabricating ceramic facing tiles at lower cost. The use of waste products when processing perlite-bearing rocks, when carrying out mining and cutting of tuffs, slags, and tuff breccia for recovering cut materials was recommended.

  2. Interference Heating to Cavities Between Simulated RSI Tiles

    NASA Technical Reports Server (NTRS)

    Johnson, C. B.

    1973-01-01

    Test results for full scale simulated surface insulation tiles on both the tunnel wall and in the free stream, for in-line and staggered tile orientations, are summarized as follows: (1) The staggered tile orientation has heating on the forward face which is a factor of 4.5 times higher than the heating to the forward face of the in-line tile orientation; (2) the longitudinal gap heating was the highest for the 0.3175 cm gap and the lowest for the 0.1587 cm gap; and (3) there was an order of magnitude decrease in the heating on the forward face of a spanwise gap when the gap size was decreased from 0.3175 cm to 0.1587 cm.

  3. Measurement of Tritium Surface Distribution on TFTR Bumper Limiter Tiles

    SciTech Connect

    K. Sugiyama; T. Tanabe; C.H. Skinner; C.A. Gentile

    2004-06-28

    The tritium surface distribution on graphite tiles used in the Tokamak Fusion Test Reactor (TFTR) bumper limiter and exposed to TFTR deuterium-tritium (D-T) discharges from 1993 to 1997 was measured by the Tritium Imaging Plate Technique (TIPT). The TFTR bumper limiter shows both re-/co-deposition and erosion. The tritium images for all tiles measured are strongly correlated with erosion and deposition patterns, and long-term tritium retention was found in the re-/co-depositions and flakes. The CFC tiles located at erosion dominated areas clearly showed their woven structure in their tritium images owing to different erosion yields between fibers and matrix. Significantly high tritium retention was observed on all sides of the erosion tiles, indicating carbon transport via repetition of local erosion/deposition cycles.

  4. Influence of microwave-annealing on the mechanical properties of alumina tiles

    SciTech Connect

    Kass, M.D.; Akerman, M.A.; Baity, F.W. Jr.; Lowden, R.A.

    1995-12-31

    Fully dense alumina armor tiles were annealed at 1400{degrees}C for one hour using microwave radiation at 28 GHz. Ultrasonic measurements showed that the acoustic impedances, and Young`s moduli of the post-annealed tiles were higher than for unannealed tiles. The post-annealed tiles also exhibited higher hardness values and improved armor performance. Microstructure analysis indicated that the grain boundary regions of the tiles were affected by the microwave heating.

  5. 56. ORIGINAL MOLDS. THE MORAVIAN POTTERY AND TILE WORKS HAS ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    56. ORIGINAL MOLDS. THE MORAVIAN POTTERY AND TILE WORKS HAS APPROXIMATELY 6,000 PLASTER MOLDS OF VARIOUS TYPES, INCLUDING THE DEEP CAVITY MOLDS IN THE CENTER OF THE PHOTOGRAPH. THESE MOLDS PRODUCED ALLEGORICAL FIGURES TO BE INSTALLED AROUND THE CORNICES OF PUBLIC SCHOOLS. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  6. No inherent glassiness in a Penrose tiling quasicrystal

    SciTech Connect

    Strandburg, K.J.; Dressel, P.R.

    1988-11-01

    Consideration of the structure of the Penrose pattern has led to speculation that a system with a Penrose tiling ground state might be subject to inherent glassy behavior. Monte Carol simulations show, using a simple model of the energetics, that there is no inherent glassiness in the Penrose tiling. Thermodynamic quantities measured are completely reversible, displaying no observable hysterisis, and the system may be easily cooled from a highly disordered configuration into its lowest energy state. 11 refs., 7 figs.

  7. Ceramic tile grout removal & sealing using high power lasers

    SciTech Connect

    Lawrence, J.; Li, L.; Spencer, J.T.

    1996-12-31

    Work has been conducted using a Nd:YAG laser, a CO{sub 2} laser and a high power diode laser (HPDL) in order to determine the feasibility of removing contaminated tile grout from the void between adjoining vitrified ceramic tiles, and to seal the void permanently with a material having an impermeable surface glaze. Reported on in the paper are; the basic process phenomena, the process effectiveness, suitable vitrifiable material development, a heat affect study and a morphological and compositional analysis.

  8. Diatoms as an indicator for tile drainage flow in a German lowland catchment

    NASA Astrophysics Data System (ADS)

    Wu, Naicheng; Faber, Claas; Ulrich, Uta; Schmalz, Britta; Fohrer, Nicola

    2014-05-01

    The separation of flow components within a model simulation is of great importance for a successful implementation of management measures. Tracers are commonly used to identify and assess runoff-generating processes and to detect sources of stream flow components within a target catchment. Diatoms could be an ideal tracer due to their diverse preferences to different aquatic habitats (van Dam et al. 1994, Pfister et al. 2009). As a part of a DFG (Deutsche Forschungsgemeinschaft) project, we collected diatom samples of 9 sites (4 tile drainage, and 5 river sites) weekly or biweekly from March to July 2013 in a German lowland catchment (the Kielstau catchment). First results showed that diatom species Achnanthes lanceolata, Fragilaria biceps and Navicula ingapirca dominated in tile drainage flow with relative abundances of 22.2%, 21.5% and 10.9%, respectively. For river sites, the most abundant species was Navicula cryptocephala (20.5%), followed by Fragilaria biceps (12.9%), Cyclotella meneghiniana (9.5%) and Achnanthes lanceolata (9.3%). Compared with river sites, tile drainage flow had lower diatom density, biomass, species richness and percentage of Aquatic/Riparian diatoms (AqRi%). However, the proportion of Riparian diatoms (RiZo%) increased at tile drainage flow. Indicator value method (IndVal) revealed that the two water types were characterized by different indicator species. Fifteen taxa (e.g. Cocconeis placentula, Cyclotella meneghiniana, Navicula cryptocephala and Fragilaria biceps) were significant indicators for river sites. Achnanthes lanceolata, Achnanthes minutissima and Navicula ingapirca were significant indicators for tile drainage flow. These results highlight the suitability of diatoms as an indicator for tile drainage flow. Spatial and temporal variations of diatom community should be considered in future surveys. Keywords: Diatoms, Flow components, Indicator value method, Tracer References: Pfister, L., J. J. McDonnell, S. Wrede, D. Hl

  9. Spatial chaos of Wang tiles with two symbols

    NASA Astrophysics Data System (ADS)

    Chen, Jin-Yu; Chen, Yu-Jie; Hu, Wen-Guei; Lin, Song-Sun

    2016-02-01

    This investigation completely classifies the spatial chaos problem in plane edge coloring (Wang tiles) with two symbols. For a set of Wang tiles B , spatial chaos occurs when the spatial entropy h ( B ) is positive. B is called a minimal cycle generator if P ( B ) ≠ 0̸ and P ( B ' ) = 0̸ whenever B ' ⫋ B , where P ( B ) is the set of all periodic patterns on ℤ2 generated by B . Given a set of Wang tiles B , write B = C 1 ∪ C 2 ∪ ⋯ ∪ C k ∪ N , where Cj, 1 ≤ j ≤ k, are minimal cycle generators and B contains no minimal cycle generator except those contained in C1∪C2∪⋯∪Ck. Then, the positivity of spatial entropy h ( B ) is completely determined by C1∪C2∪⋯∪Ck. Furthermore, there are 39 equivalence classes of marginal positive-entropy sets of Wang tiles and 18 equivalence classes of saturated zero-entropy sets of Wang tiles. For a set of Wang tiles B , h ( B ) is positive if and only if B contains a MPE set, and h ( B ) is zero if and only if B is a subset of a SZE set.

  10. Genomic Alteration in Head and Neck Squamous Cell Carcinoma (HNSCC) Cell Lines Inferred from Karyotyping, Molecular Cytogenetics, and Array Comparative Genomic Hybridization.

    PubMed

    Singchat, Worapong; Hitakomate, Ekarat; Rerkarmnuaychoke, Budsaba; Suntronpong, Aorarat; Fu, Beiyuan; Bodhisuwan, Winai; Peyachoknagul, Surin; Yang, Fengtang; Koontongkaew, Sittichai; Srikulnath, Kornsorn

    2016-01-01

    Genomic alteration in head and neck squamous cell carcinoma (HNSCC) was studied in two cell line pairs (HN30-HN31 and HN4-HN12) using conventional C-banding, multiplex fluorescence in situ hybridization (M-FISH), and array comparative genomic hybridization (array CGH). HN30 and HN4 were derived from primary lesions in the pharynx and base of tongue, respectively, and HN31 and HN12 were derived from lymph-node metastatic lesions belonging to the same patients. Gain of chromosome 1, 7, and 11 were shared in almost all cell lines. Hierarchical clustering revealed that HN31 was closely related to HN4, which shared eight chromosome alteration cases. Large C-positive heterochromatins were found in the centromeric region of chromosome 9 in HN31 and HN4, which suggests complex structural amplification of the repetitive sequence. Array CGH revealed amplification of 7p22.3p11.2, 8q11.23q12.1, and 14q32.33 in all cell lines involved with tumorigenesis and inflammation genes. The amplification of 2p21 (SIX3), 11p15.5 (H19), and 11q21q22.3 (MAML2, PGR, TRPC6, and MMP family) regions, and deletion of 9p23 (PTPRD) and 16q23.1 (WWOX) regions were identified in HN31 and HN12. Interestingly, partial loss of PTPRD (9p23) and WWOX (16q23.1) genes was identified in HN31 and HN12, and the level of gene expression tended to be the down-regulation of PTPRD, with no detectable expression of the WWOX gene. This suggests that the scarcity of PTPRD and WWOX genes might have played an important role in progression of HNSCC, and could be considered as a target for cancer therapy or a biomarker in molecular pathology.

  11. Genomic Alteration in Head and Neck Squamous Cell Carcinoma (HNSCC) Cell Lines Inferred from Karyotyping, Molecular Cytogenetics, and Array Comparative Genomic Hybridization.

    PubMed

    Singchat, Worapong; Hitakomate, Ekarat; Rerkarmnuaychoke, Budsaba; Suntronpong, Aorarat; Fu, Beiyuan; Bodhisuwan, Winai; Peyachoknagul, Surin; Yang, Fengtang; Koontongkaew, Sittichai; Srikulnath, Kornsorn

    2016-01-01

    Genomic alteration in head and neck squamous cell carcinoma (HNSCC) was studied in two cell line pairs (HN30-HN31 and HN4-HN12) using conventional C-banding, multiplex fluorescence in situ hybridization (M-FISH), and array comparative genomic hybridization (array CGH). HN30 and HN4 were derived from primary lesions in the pharynx and base of tongue, respectively, and HN31 and HN12 were derived from lymph-node metastatic lesions belonging to the same patients. Gain of chromosome 1, 7, and 11 were shared in almost all cell lines. Hierarchical clustering revealed that HN31 was closely related to HN4, which shared eight chromosome alteration cases. Large C-positive heterochromatins were found in the centromeric region of chromosome 9 in HN31 and HN4, which suggests complex structural amplification of the repetitive sequence. Array CGH revealed amplification of 7p22.3p11.2, 8q11.23q12.1, and 14q32.33 in all cell lines involved with tumorigenesis and inflammation genes. The amplification of 2p21 (SIX3), 11p15.5 (H19), and 11q21q22.3 (MAML2, PGR, TRPC6, and MMP family) regions, and deletion of 9p23 (PTPRD) and 16q23.1 (WWOX) regions were identified in HN31 and HN12. Interestingly, partial loss of PTPRD (9p23) and WWOX (16q23.1) genes was identified in HN31 and HN12, and the level of gene expression tended to be the down-regulation of PTPRD, with no detectable expression of the WWOX gene. This suggests that the scarcity of PTPRD and WWOX genes might have played an important role in progression of HNSCC, and could be considered as a target for cancer therapy or a biomarker in molecular pathology. PMID:27501229

  12. Genomic Alteration in Head and Neck Squamous Cell Carcinoma (HNSCC) Cell Lines Inferred from Karyotyping, Molecular Cytogenetics, and Array Comparative Genomic Hybridization

    PubMed Central

    Rerkarmnuaychoke, Budsaba; Suntronpong, Aorarat; Fu, Beiyuan; Bodhisuwan, Winai; Peyachoknagul, Surin; Yang, Fengtang; Koontongkaew, Sittichai; Srikulnath, Kornsorn

    2016-01-01

    Genomic alteration in head and neck squamous cell carcinoma (HNSCC) was studied in two cell line pairs (HN30-HN31 and HN4-HN12) using conventional C-banding, multiplex fluorescence in situ hybridization (M-FISH), and array comparative genomic hybridization (array CGH). HN30 and HN4 were derived from primary lesions in the pharynx and base of tongue, respectively, and HN31 and HN12 were derived from lymph-node metastatic lesions belonging to the same patients. Gain of chromosome 1, 7, and 11 were shared in almost all cell lines. Hierarchical clustering revealed that HN31 was closely related to HN4, which shared eight chromosome alteration cases. Large C-positive heterochromatins were found in the centromeric region of chromosome 9 in HN31 and HN4, which suggests complex structural amplification of the repetitive sequence. Array CGH revealed amplification of 7p22.3p11.2, 8q11.23q12.1, and 14q32.33 in all cell lines involved with tumorigenesis and inflammation genes. The amplification of 2p21 (SIX3), 11p15.5 (H19), and 11q21q22.3 (MAML2, PGR, TRPC6, and MMP family) regions, and deletion of 9p23 (PTPRD) and 16q23.1 (WWOX) regions were identified in HN31 and HN12. Interestingly, partial loss of PTPRD (9p23) and WWOX (16q23.1) genes was identified in HN31 and HN12, and the level of gene expression tended to be the down-regulation of PTPRD, with no detectable expression of the WWOX gene. This suggests that the scarcity of PTPRD and WWOX genes might have played an important role in progression of HNSCC, and could be considered as a target for cancer therapy or a biomarker in molecular pathology. PMID:27501229

  13. Tiling solutions for optimal biological sensing

    NASA Astrophysics Data System (ADS)

    Walczak, Aleksandra M.

    2015-10-01

    Biological systems, from cells to organisms, must respond to the ever-changing environment in order to survive and function. This is not a simple task given the often random nature of the signals they receive, as well as the intrinsically stochastic, many-body and often self-organized nature of the processes that control their sensing and response and limited resources. Despite a wide range of scales and functions that can be observed in the living world, some common principles that govern the behavior of biological systems emerge. Here I review two examples of very different biological problems: information transmission in gene regulatory networks and diversity of adaptive immune receptor repertoires that protect us from pathogens. I discuss the trade-offs that physical laws impose on these systems and show that the optimal designs of both immune repertoires and gene regulatory networks display similar discrete tiling structures. These solutions rely on locally non-overlapping placements of the responding elements (genes and receptors) that, overall, cover space nearly uniformly. xml:lang="fr"

  14. Performance of a 64-channel, 3.2×3.2 cm2 SiPM tile for TOF-PET application

    NASA Astrophysics Data System (ADS)

    Ferri, Alessandro; Acerbi, Fabio; Gola, Alberto; Piemonte, Claudio; Paternoster, Giovanni; Zorzi, Nicola

    2016-07-01

    In this work, we present a new 3.2×3.2 cm2 detector tile, composed of 8×8 single SiPMs, having a regular 4 mm pitch in both the X and Y directions. The tile fill factor is 85%. We produced two versions of the tile with different SiPM technologies: RGB-HD and NUV. The first one features square micro-cells with 25 μm pitch, a PDE peaked at 550 nm and a DCR of 300 kHz/mm2, at 20 °C and at maximum detection efficiency. The second one features micro-cells with 40 μm pitch and a PDE peaked in the blue part of the spectrum. The dark count rate at 20 °C and at maximum PDE is 100 kHz/mm2. In this work, we show the energy and timing resolution measurements at 511 keV obtained coupling the two tiles to an 8×8 LYSO array with a pixel size of 4×4×22 mm3, perfectly matching the photo-detector array.

  15. Uncertainty in nutrient loads from tile-drained landscapes: Effect of sampling frequency, calculation algorithm, and compositing strategy

    NASA Astrophysics Data System (ADS)

    Williams, Mark R.; King, Kevin W.; Macrae, Merrin L.; Ford, William; Van Esbroeck, Chris; Brunke, Richard I.; English, Michael C.; Schiff, Sherry L.

    2015-11-01

    Accurate estimates of annual nutrient loads are required to evaluate trends in water quality following changes in land use or management and to calibrate and validate water quality models. While much emphasis has been placed on understanding the uncertainty of nutrient load estimates in large, naturally drained watersheds, few studies have focused on tile-drained fields and small tile-drained headwater watersheds. The objective of this study was to quantify uncertainty in annual dissolved reactive phosphorus (DRP) and nitrate-nitrogen (NO3-N) load estimates from four tile-drained fields and two small tile-drained headwater watersheds in Ohio, USA and Ontario, Canada. High temporal resolution datasets of discharge (10-30 min) and nutrient concentration (2 h to 1 d) were collected over a 1-2 year period at each site and used to calculate a reference nutrient load. Monte Carlo simulations were used to subsample the measured data to assess the effects of sample frequency, calculation algorithm, and compositing strategy on the uncertainty of load estimates. Results showed that uncertainty in annual DRP and NO3-N load estimates was influenced by both the sampling interval and the load estimation algorithm. Uncertainty in annual nutrient load estimates increased with increasing sampling interval for all of the load estimation algorithms tested. Continuous discharge measurements and linear interpolation of nutrient concentrations yielded the least amount of uncertainty, but still tended to underestimate the reference load. Compositing strategies generally improved the precision of load estimates compared to discrete grab samples; however, they often reduced the accuracy. Based on the results of this study, we recommended that nutrient concentration be measured every 13-26 h for DRP and every 2.7-17.5 d for NO3-N in tile-drained fields and small tile-drained headwater watersheds to accurately (±10%) estimate annual loads.

  16. Using a Multijunction Microfluidic Device to Inject Substrate inot an Array of Preformed Plugs Without Cross-Contamination: Comparing Theory and Experiments

    SciTech Connect

    Liang, L.; Boedicker, J; Ismagilov, R

    2007-01-01

    In this paper we describe a multijunction microfluidic device for the injection of a substrate into an array of preformed plugs carried by an immiscible fluid in a microchannel. The device uses multiple junctions to inject substrate into preformed plugs without synchronization of the flow of substrate and the array of preformed plugs of reagent, which reduces cross-contamination of the plugs, eliminates formation of small droplets of substrate, and allows a greater range of injection ratios compared to that of a single T-junction. The device was based on a previously developed physical model for transport that was here adapted to describe injection and experimentally verified. After characterization, the device was applied to two biochemical assays, including evaluation of the enzymatic activity of thrombin and determination of the coagulation time of human blood plasma, which both provided reliable results. The reduction of cross-contamination and greater range of injection ratios achieved by this device may improve the processes that involve addition and titration of reagents into plugs, such as high-throughput screening of protein crystallization conditions.

  17. Using Campylobacter spp. and Escherichia coli data and Bayesian microbial risk assessment to examine public health risks in agricultural watersheds under tile drainage management.

    PubMed

    Schmidt, P J; Pintar, K D M; Fazil, A M; Flemming, C A; Lanthier, M; Laprade, N; Sunohara, M D; Simhon, A; Thomas, J L; Topp, E; Wilkes, G; Lapen, D R

    2013-06-15

    Human campylobacteriosis is the leading bacterial gastrointestinal illness in Canada; environmental transmission has been implicated in addition to transmission via consumption of contaminated food. Information about Campylobacter spp. occurrence at the watershed scale will enhance our understanding of the associated public health risks and the efficacy of source water protection strategies. The overriding purpose of this study is to provide a quantitative framework to assess and compare the relative public health significance of watershed microbial water quality associated with agricultural BMPs. A microbial monitoring program was expanded from fecal indicator analyses and Campylobacter spp. presence/absence tests to the development of a novel, 11-tube most probable number (MPN) method that targeted Campylobacter jejuni, Campylobacter coli, and Campylobacter lari. These three types of data were used to make inferences about theoretical risks in a watershed in which controlled tile drainage is widely practiced, an adjacent watershed with conventional (uncontrolled) tile drainage, and reference sites elsewhere in the same river basin. E. coli concentrations (MPN and plate count) in the controlled tile drainage watershed were statistically higher (2008-11), relative to the uncontrolled tile drainage watershed, but yearly variation was high as well. Escherichia coli loading for years 2008-11 combined were statistically higher in the controlled watershed, relative to the uncontrolled tile drainage watershed, but Campylobacter spp. loads for 2010-11 were generally higher for the uncontrolled tile drainage watershed (but not statistically significant). Using MPN data and a Bayesian modelling approach, higher mean Campylobacter spp. concentrations were found in the controlled tile drainage watershed relative to the uncontrolled tile drainage watershed (2010, 2011). A second-order quantitative microbial risk assessment (QMRA) was used, in a relative way, to identify

  18. Application of Hilbert-Huang Transform for Improved Defect Detection in Terahertz NDE of Shuttle Tiles

    NASA Technical Reports Server (NTRS)

    Anastasi, Robert F.; Madaras, Eric I.

    2005-01-01

    Terahertz NDE is being examined as a method to inspect the adhesive bond-line of Space Shuttle tiles for defects. Terahertz signals are generated and detected, using optical excitation of biased semiconductors with femtosecond laser pulses. Shuttle tile samples were manufactured with defects that included repair regions unbond regions, and other conditions that occur in Shuttle structures. These samples were inspected with a commercial terahertz NDE system that scanned a tile and generated a data set of RF signals. The signals were post processed to generate C-scan type images that are typically seen in ultrasonic NDE. To improve defect visualization the Hilbert-Huang Transform, a transform that decomposes a signal into oscillating components called intrinsic mode functions, was applied to test signals identified as being in and out of the defect regions and then on a complete data set. As expected with this transform, the results showed that the decomposed low-order modes correspond to signal noise while the high-order modes correspond to low frequency oscillations in the signal and mid-order modes correspond to local signal oscillations. The local oscillations compare well with various reflection interfaces and the defect locations in the original signal.

  19. Prevalence of Cardiovascular Risk Factors among Tile and Ceramic Workers in Yazd, Iran

    PubMed Central

    Mehrparvar, Amir Houshang; Mirmohammadi, Seyyed Jalil; Heydari, Mohammad; Samimi, Ehsan; Zohal, Mahnaz

    2013-01-01

    Introduction. Cardiovascular disorders (CVDs) are among the most important diseases in the world and determination of their risk factors is essential for primary and secondary prevention. This study aimed to evaluate these risk factors in workers of tile and ceramic industry, a main industry in Yazd. Materials and Methods. In a cross-sectional study, 1075 tile and ceramic workers were selected by simple sampling method. BMI, blood pressure, FBS, and lipid profile were measured and compared to international standards. Results. 731 individuals (68%) had at least one risk factor, and 52%, 12%, 3%, and 0.7% had one, two, three, and four risk factors, respectively. The most common risk factor was abnormal BMI (49.6%); low HDL (48.4%) and high TG (14.1%) were in the second and third orders. Conclusion. This study showed a relatively high prevalence for CVD risk factors among tile and ceramic workers. Low HDL, high TG, and overweight were the most frequent risk factors in this population. PMID:24967143

  20. Parametric Weight Comparison of Advanced Metallic, Ceramic Tile, and Ceramic Blanket Thermal Protection Systems

    NASA Technical Reports Server (NTRS)

    Myers, David E.; Martin, Carl J.; Blosser, Max L.

    2000-01-01

    A parametric weight assessment of advanced metallic panel, ceramic blanket, and ceramic tile thermal protection systems (TPS) was conducted using an implicit, one-dimensional (I-D) finite element sizing code. This sizing code contained models to account for coatings fasteners, adhesives, and strain isolation pads. Atmospheric entry heating profiles for two vehicles, the Access to Space (ATS) vehicle and a proposed Reusable Launch Vehicle (RLV), were used to ensure that the trends were not unique to a certain trajectory. Ten TPS concepts were compared for a range of applied heat loads and substructural heat capacities to identify general trends. This study found the blanket TPS concepts have the lightest weights over the majority of their applicable ranges, and current technology ceramic tiles and metallic TPS concepts have similar weights. A proposed, state-of-the-art metallic system which uses a higher temperature alloy and efficient multilayer insulation was predicted to be significantly lighter than the ceramic tile stems and approaches blanket TPS weights for higher integrated heat loads.

  1. Dominant controls on pesticide transport from tile to catchment scale: Lessons from a minimalist model

    NASA Astrophysics Data System (ADS)

    Zanardo, S.; Basu, N. B.; Botter, G.; Rinaldo, A.; Rao, P. S. C.

    2012-04-01

    This paper proposes a minimalist modeling approach for characterizing pesticide concentrations in runoff from agricultural catchments across spatial scales. The model proposed is of an intermediate level of complexity between traditional chromatographic separation models and the more complex dual-domain models. Parsimony in the model is achieved by assuming stationarity of catchment travel time distributions and by coupling a dual-domain source zone model that describes near-surface pesticide dynamics with the mass response function (MRF) approach, which describes catchment-scale solute transport. The model is evaluated by comparing predicted atrazine concentrations with measured values over a 5 yr period at two spatial scales (tile drain: 3-5 ha; river station: 69 km2) within an intensively managed agricultural catchment in Illinois, United States. Pesticide dynamics within the source zone provided the strongest control on leaching. Two parameters were calibrated at the tile scale, Γ, which describes partitioning in the dual-domain surficial source zone, and ke, which describes the mass transfer rate constant between the two domains. The initial peak of concentration was found to be sensitive to Γ, while the later peaks were sensitive to ke. The calibrated parameters at the tile stations were used to predict atrazine dynamics at the river station. Prediction errors are examined and related to the lack of detailed information about anthropogenic forcings across scales (e.g., land-use or soil/crop management practices).

  2. Numerical simulation of armor capability of AI2O3 and SiC armor tiles

    NASA Astrophysics Data System (ADS)

    Rashid, T.; Aleem, M. A.; Akbar, S.; Rauf, A.; Shuaib, M.

    2016-08-01

    Alumina and Silicon Carbide armor plates have been tested numerically against 7.62x51 (mm x mm) armor piercing (AP) projectiles. A 2-D problem with axial symmetry has been designedand the simulations were carried out using commercial software ANSYS AUTODYN. Experiments were modeled for Alumina (99.5%), Alumina (99.7%) and SiC with a range of tile thicknesses (5, 10, 15 and 20 mm). The projectile was chosen as 7.62 x 51AP bullet (initial velocity 810 m/sec)with two different core materials Steel 4340 and WC, however, casing material was copper for both cores. SiC showed better defense against AP bullet as compared to Al2O3. The residual velocity and momentum of the bullet were found to decrease with increasing tile thickness. SiC tiles with thickness 15mm and 20 mm successfully sustained penetration against steel 4340 and WC core bullets, respectively. However none of the Alumina targets succeeded in stopping the bullet.

  3. Characterizing phosphorus dynamics in tile-drained agricultural fieldsof eastern Wisconsin

    USGS Publications Warehouse

    Madison, Allison; Ruark, Matthew; Stuntebeck, Todd D.; Komiskey, Matthew J.; Good, Laura W; Drummy, Nancy; Cooley, Eric

    2014-01-01

    Artificial subsurface drainage provides an avenue for the rapid transfer of phosphorus (P) from agricultural fields to surface waters. This is of particular interest in eastern Wisconsin, where there is a concentrated population of dairy farms and high clay content soils prone to macropore development. Through collaboration with private landowners, surface and tile drainage was measured and analyzed for dissolved reactive P (DRP) and total P (TP) losses at four field sites in eastern Wisconsin between 2005 and 2009. These sites, which received frequent manure applications, represent a range of crop management practices which include: two chisel plowed corn fields (CP1, CP2), a no-till corn–soybean field (NT), and a grazed pasture (GP). Subsurface drainage was the dominant pathway of water loss at each site accounting for 66–96% of total water discharge. Average annual flow-weighted (FW) TP concentrations were 0.88, 0.57, 0.21, and 1.32 mg L−1 for sites CP1, CP2, NT, and GP, respectively. Low TP concentrations at the NT site were due to tile drain interception of groundwater flow where large volumes of tile drainage water diluted the FW-TP concentrations. Subsurface pathways contributed between 17% and 41% of the TP loss across sites. On a drainage event basis, total drainage explained between 36% and 72% of the event DRP loads across CP1, CP2, and GP; there was no relationship between event drainflow and event DRP load at the NT site. Manure applications did not consistently increase P concentrations in drainflow, but annual FW-P concentrations were greater in years receiving manure applications compared to years without manure application. Based on these field measures, P losses from tile drainage must be integrated into field level P budgets and P loss calculations on heavily manured soils, while also acknowledging the unique drainage patterns observed in eastern Wisconsin.

  4. Chromosome deletion of 14q32.33 detected by array comparative genomic hybridization in a patient with features of dubowitz syndrome.

    PubMed

    Darcy, Diana C; Rosenthal, Scott; Wallerstein, Robert J

    2011-01-01

    We report a 4-year-old girl of Mexican origins with a clinical diagnosis of Dubowitz syndrome who carries a de novo terminal deletion at the 14q32.33 locus identified by array comparative genomic hybridization (aCGH). Dubowitz syndrome is a rare condition characterized by a constellation of features including growth retardation, short stature, microcephaly, micrognathia, eczema, telecanthus, blepharophimosis, ptosis, epicanthal folds, broad nasal bridge, round-tipped nose, mild to moderate developmental delay, and high-pitched hoarse voice. This syndrome is thought to be autosomal recessive; however, the etiology has not been determined. This is the first report of this deletion in association with this phenotype; it is possible that this deletion may be causal for a Dubowitz phenocopy.

  5. Towards Optimal Filtering on ARM for ATLAS Tile Calorimeter Front-End Processing

    NASA Astrophysics Data System (ADS)

    Cox, Mitchell A.

    2015-10-01

    The Large Hadron Collider at CERN generates enormous amounts of raw data which presents a serious computing challenge. After planned upgrades in 2022, the data output from the ATLAS Tile Calorimeter will increase by 200 times to over 40 Tb/s. Advanced and characteristically expensive Digital Signal Processors (DSPs) and Field Programmable Gate Arrays (FPGAs) are currently used to process this quantity of data. It is proposed that a cost- effective, high data throughput Processing Unit (PU) can be developed by using several ARM System on Chips in a cluster configuration to allow aggregated processing performance and data throughput while maintaining minimal software design difficulty for the end-user. ARM is a cost effective and energy efficient alternative CPU architecture to the long established x86 architecture. This PU could be used for a variety of high-level algorithms on the high data throughput raw data. An Optimal Filtering algorithm has been implemented in C++ and several ARM platforms have been tested. Optimal Filtering is currently used in the ATLAS Tile Calorimeter front-end for basic energy reconstruction and is currently implemented on DSPs.

  6. Optimizing roof-integrated photovoltaics: A case study of the PowerGuard{trademark} roofing tile

    SciTech Connect

    Dinwoodie, T.L.; Shugar, D.S.

    1994-12-31

    This paper describes the development and implementation of a building-integrated photovoltaic (PV) roofing tile system that provides grid-connected electric power to buildings. The PV roofing tile system, together with waterproof membrane, insulation, and electrical interconnection, is called PowerGuard{trademark}. PowerGuard is one of the first PV roofing systems for flat and moderately-sloped commercial buildings that replaces conventional roof materials without requiring membrane penetrations and mechanical fastening to building structures. When evaluated as a PV system, the building integration reduces the cost of a PowerGuard system by 14% to 26% rather than incurring a structural mounting cost of 18% to 22 % to conventionally fasten the system. Data are reported from a 3.0 kW PowerGuard prototype operating in Folsom, California. PowerLight Corporation supplied the system using large-area amorphous silicon modules manufactured by Advanced Photovoltaic Systems, Inc. Performance data indicates the system is exceeding contractual requirements. Sensitivity analysis, based upon performance, installed costs, and supplier data, indicates (1) a marginal economic advantage to tilting the PV array; (2) a marginal economic impact of increased PV efficiency; and (3) economies-of-scale which make PowerGuard systems economical today for commercial customers in sunny areas who pay high electricity rates.

  7. The advantage of using SNP array in clinical testing for hematological malignancies--a comparative study of three genetic testing methods.

    PubMed

    Xu, Xinjie; Johnson, Eric B; Leverton, Lisa; Arthur, Ashley; Watson, Quinn; Chang, Faye L; Raca, Gordana; Laffin, Jennifer J

    2013-01-01

    Cytogenetic methods, including G-banded chromosome analysis and fluorescence in situ hybridization (FISH) analysis, serve as a critical part of routine clinical testing for hematological malignancies and provide important diagnostic and prognostic information; however, the limitations of cytogenetic methods, including the requirement for actively dividing cells and lower resolution of G-banded chromosome analysis as well as the inability of both G-banded chromosome analysis and FISH to detect copy number neutral loss of heterozygosity (CN-LOH), can result in a failure to detect genomic abnormalities with diagnostic and prognostic significance. Here, we compared the abnormality detection rate of clinically requested testing (i.e., G-banded chromosome analysis and FISH) with high-resolution oligo (i.e., array comparative genomic hybridization (aCGH)) and single-nucleotide polymorphism (SNP)/oligo hybrid (i.e., SNP-CGH) arrays in a series of patients, in an effort to assess the ability of newer technologies to overcome these limitations. This series found the detection rate for SNP-CGH to be 62.5% for myelodysplastic syndrome (MDS) cases and 72.7% for chronic lymphocytic leukemia (CLL) cases, which are significantly higher than the detection rates of aCGH (31.3% for MDS and 54.5% for CLL) and G-banding and/or FISH (43.8% for MDS and 54.5% for CLL). This demonstrates the advantages of combining SNP-CGH with conventional cytogenetics to provide comprehensive clinical information by detecting clonality, large balanced rearrangements, copy number aberrations, and CN-LOH.

  8. Somatic alterations in the melanoma genome: a high-resolution array-based comparative genomic hybridization study.

    PubMed

    Gast, Andreas; Scherer, Dominique; Chen, Bowang; Bloethner, Sandra; Melchert, Stephanie; Sucker, Antje; Hemminki, Kari; Schadendorf, Dirk; Kumar, Rajiv

    2010-08-01

    We performed DNA microarray-based comparative genomic hybridization to identify somatic alterations specific to melanoma genome in 60 human cell lines from metastasized melanoma and from 44 corresponding peripheral blood mononuclear cells. Our data showed gross but nonrandom somatic changes specific to the tumor genome. Although the CDKN2A (78%) and PTEN (70%) loci were the major targets of mono-allelic and bi-allelic deletions, amplifications affected loci with BRAF (53%) and NRAS (12%) as well as EGFR (52%), MITF (40%), NOTCH2 (35%), CCND1 (18%), MDM2 (18%), CCNE1 (10%), and CDK4 (8%). The amplified loci carried additional genes, many of which could potentially play a role in melanoma. Distinct patterns of copy number changes showed that alterations in CDKN2A tended to be more clustered in cell lines with mutations in the BRAF and NRAS genes; the PTEN locus was targeted mainly in conjunction with BRAF mutations. Amplification of CCND1, CDK4, and other loci was significantly increased in cell lines without BRAF-NRAS mutations and so was the loss of chromosome arms 13q and 16q. Our data suggest involvement of distinct genetic pathways that are driven either through oncogenic BRAF and NRAS mutations complemented by aberrations in the CDKN2A and PTEN genes or involve amplification of oncogenic genomic loci and loss of 13q and 16q. It also emerges that each tumor besides being affected by major and most common somatic genetic alterations also acquires additional genetic alterations that could be crucial in determining response to small molecular inhibitors that are being currently pursued. PMID:20544847

  9. Genome‐scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi‐strain arrays

    PubMed Central

    Siezen, Roland J.; Bayjanov, Jumamurat R.; Felis, Giovanna E.; van der Sijde, Marijke R.; Starrenburg, Marjo; Molenaar, Douwe; Wels, Michiel; van Hijum, Sacha A. F. T.; van Hylckama Vlieg, Johan E. T.

    2011-01-01

    Summary Lactococcus lactis produces lactic acid and is widely used in the manufacturing of various fermented dairy products. However, the species is also frequently isolated from non‐dairy niches, such as fermented plant material. Recently, these non‐dairy strains have gained increasing interest, as they have been described to possess flavour‐forming activities that are rarely found in dairy isolates and have diverse metabolic properties. We performed an extensive whole‐genome diversity analysis on 39 L. lactis strains, isolated from dairy and plant sources. Comparative genome hybridization analysis with multi‐strain microarrays was used to assess presence or absence of genes and gene clusters in these strains, relative to all L. lactis sequences in public databases, whereby chromosomal and plasmid‐encoded genes were computationally analysed separately. Nearly 3900 chromosomal orthologous groups (chrOGs) were defined on basis of four sequenced chromosomes of L. lactis strains (IL1403, KF147, SK11, MG1363). Of these, 1268 chrOGs are present in at least 35 strains and represent the presently known core genome of L. lactis, and 72 chrOGs appear to be unique for L. lactis. Nearly 600 and 400 chrOGs were found to be specific for either the subspecies lactis or subspecies cremoris respectively. Strain variability was found in presence or absence of gene clusters related to growth on plant substrates, such as genes involved in the consumption of arabinose, xylan, α‐galactosides and galacturonate. Further niche‐specific differences were found in gene clusters for exopolysaccharides biosynthesis, stress response (iron transport, osmotolerance) and bacterial defence mechanisms (nisin biosynthesis). Strain variability of functions encoded on known plasmids included proteolysis, lactose fermentation, citrate uptake, metal ion resistance and exopolysaccharides biosynthesis. The present study supports the view of L. lactis as a species with a very flexible

  10. Construction of 2D quasi-periodic Rauzy tiling by similarity transformation

    SciTech Connect

    Zhuravlev, V. G.; Maleev, A. V.

    2009-05-15

    A new approach to constructing self-similar fractal tilings is proposed based on the construction of semigroups generated by a finite set of similarity transformations. The Rauzy tiling-a 2D analog of 1D Fibonacci tiling generated by the golden mean-is used as an example to illustrate this approach. It is shown that the Rauzy torus development and the elementary fractal boundary of Rauzy tiling can be constructed in the form of a set of centers of similarity semigroups generated by two and three similarity transformations, respectively. A centrosymmetric tiling, locally dual to the Rauzy tiling, is constructed for the first time and its parameterization is developed.

  11. Distortion, Orientation, and Translation Corrections of Tiled EMCCD Detectors for the New Solid State X-ray Image Intensifier (SSXII)

    PubMed Central

    Hamwi, Hidab; Lee, Joseph W.; Hoffmann, Kenneth R.; Rudin, Stephen; Verevkin, Aleksandr

    2008-01-01

    We report on the technology of imaging corrections for a new solid state x-ray image intensifier (SSXII) with enhanced resolution and fluoroscopic imaging capabilities, made of a mosaic of modules (tiled-array) each consisting of CsI(Tl) phosphor coupled using a fiber-optic taper or minifier to an electron multiplier charge coupled device (EMCCD). Generating high quality images using this EMCCD tiled-array system requires the determination and correction of the individual EMCCD sub-images with respect to relative rotations and translations as well as optical distortions due to the fiber optic tapers. The image corrections procedure is based on comparison of resulting (distorted) images with the known square pattern of a wire mesh phantom. The mesh crossing point positions in each sub-image are automatically identified. With the crossing points identified, the mapping between distorted and an undistorted array is determined. For each pixel in a distorted sub-image, the corresponding location in the corrected sub-image is calculated using bilinear interpolation. For the rotation corrections between sub-images, the orientation of the vectors between respective mesh crossing points in the various sub-images are determined and each sub-image is appropriately rotated with the pixel values again determined using bilinear interpolation. Image translation corrections are performed using reference structures at known locations. According to our estimations, the distortion corrections are accurate to within 1%; the rotations are determined to within 0.1 degree, and translation corrections are accurate to well within 1 pixel. This technology will provide the basis for generating single composite images from tiled-image configurations of the SSXII regardless of how many modules are used to form the images. PMID:18836569

  12. Automated Absorber Attachment for X-ray Microcalorimeter Arrays

    NASA Technical Reports Server (NTRS)

    Moseley, S.; Allen, Christine; Kilbourne, Caroline; Miller, Timothy M.; Costen, Nick; Schulte, Eric; Moseley, Samuel J.

    2007-01-01

    Our goal is to develop a method for the automated attachment of large numbers of absorber tiles to large format detector arrays. This development includes the fabrication of high quality, closely spaced HgTe absorber tiles that are properly positioned for pick-and-place by our FC150 flip chip bonder. The FC150 also transfers the appropriate minute amount of epoxy to the detectors for permanent attachment of the absorbers. The success of this development will replace an arduous, risky and highly manual task with a reliable, high-precision automated process.

  13. Investigation of registration algorithms for the automatic tile processing system

    NASA Technical Reports Server (NTRS)

    Tamir, Dan E.

    1995-01-01

    The Robotic Tile Inspection System (RTPS), under development in NASA-KSC, is expected to automate the processes of post-flight re-water-proofing and the process of inspection of the Shuttle heat absorbing tiles. An important task of the robot vision sub-system is to register the 'real-world' coordinates with the coordinates of the robot model of the Shuttle tiles. The model coordinates relate to a tile data-base and pre-flight tile-images. In the registration process, current (post-flight) images are aligned with pre-flight images to detect the rotation and translation displacement required for the coordinate systems rectification. The research activities performed this summer included study and evaluation of the registration algorithm that is currently implemented by the RTPS, as well as, investigation of the utility of other registration algorithms. It has been found that the current algorithm is not robust enough. This algorithm has a success rate of less than 80% and is, therefore, not suitable for complying with the requirements of the RTPS. Modifications to the current algorithm has been developed and tested. These modifications can improve the performance of the registration algorithm in a significant way. However, this improvement is not sufficient to satisfy system requirements. A new algorithm for registration has been developed and tested. This algorithm presented very high degree of robustness with success rate of 96%.

  14. Structural testing of hollow clay tile units. Volume 1

    SciTech Connect

    Flanagan, R.D.; Bennett, R.M.

    1992-08-05

    This report presents the results of laboratory testing of hollow clay tile masonry units. The testing is part of an ongoing natural phenomena evaluation program of Hollow Clay Tile Wall (HCTW) facilities at the Oak Ridge Y-12 Plant. The primary purpose of these tests is to determine structural properties of unit tiles of the same lot to be used in large-scale laboratory testing of HCTW structures. Light red (terra cotta) clay masonry units, taken from the construction supply yard of were sampled and tested in accordance with applicable ASTM standards. Measurement of size, measurement of void area, initial rate of absorption, compressive strength, and splitting tensile strength procedures were performed. Evaluation of the test results along with comparison to other published clay tile data is provided. Volume 1 of this document contains a description of the testing, a summary of the results, comparison to other published clay tile data, and conclusion drawn from the results. Volume 2 contains the unreduced test data, data reduction software, and quality assurance aspects of the testing.

  15. The ATLAS tile calorimeter performance at the LHC

    SciTech Connect

    Calkins, R.

    2011-07-01

    The Tile Calorimeter (TileCal), the central section of the hadronic calorimeter of the ATLAS experiment, is a key detector component to detect hadrons, jets and taus and to measure the missing transverse energy. Due to the very good muon signal to noise ratio it assists the spectrometer in the identification and reconstruction of muons. TileCal is built of steel and scintillating tiles coupled to optical fibers and read out by photomultipliers. The calorimeter is equipped with systems that allow to monitor and to calibrate each stage of the read out system exploiting different signal sources: laser light, charge injection and a radioactive source. The performance of the calorimeter has been measured and monitored using calibration data, random triggered data, cosmic muons and more importantly LHC collision events. The results presented here assess the absolute energy scale calibration precision, the energy and timing uniformity and the synchronization precision. The ensemble of the results demonstrates a very good understanding of the performance of the Tile Calorimeter that is proved to be well within the design expectations. (authors)

  16. Leaching of dissolved phosphorus from tile-drained agricultural areas.

    PubMed

    Andersen, H E; Windolf, J; Kronvang, B

    2016-01-01

    We investigated leaching of dissolved phosphorus (P) from 45 tile-drains representing animal husbandry farms in all regions of Denmark. Leaching of P via tile-drains exhibits a high degree of spatial heterogeneity with a low concentration in the majority of tile-drains and few tile-drains (15% in our investigation) having high to very high concentration of dissolved P. The share of dissolved organic P (DOP) was high (up to 96%). Leaching of DOP has hitherto been a somewhat overlooked P loss pathway in Danish soils and the mechanisms of mobilization and transport of DOP needs more investigation. We found a high correlation between Olsen-P and water extractable P. Water extractable P is regarded as an indicator of risk of loss of dissolved P. Our findings indicate that Olsen-P, which is measured routinely in Danish agricultural soils, may be a useful proxy for the P leaching potential of soils. However, we found no straight-forward correlation between leaching potential of the top soil layer (expressed as either degree of P saturation, Olsen-P or water extractable P) and the measured concentration of dissolved P in the tile-drain. This underlines that not only the source of P but also the P loss pathway must be taken into account when evaluating the risk of P loss. PMID:27332841

  17. Characterization of ceramic roof tile wastes as pozzolanic admixture.

    PubMed

    Lavat, Araceli E; Trezza, Monica A; Poggi, Mónica

    2009-05-01

    The aim of this work is to study the recycling of tile wastes in the manufacture of blended cements. Cracked or broken ceramic bodies are not accepted as commercial products and, therefore, the unsold waste of the ceramic industry becomes an environment problem. The use of powdered roof tile in cement production, as pozzolanic addition, is reported. The wastes were classified as nonglazed, natural and black glazed tiles. The mineralogy of the powders was controlled by SEM-EDX microscopy, XRD analysis and FTIR spectroscopy. Particle size was checked by laser granulometry. Once the materials were fully characterized, pozzolanic lime consumption tests and Fratini tests were carried out. Different formulations of cement-tile blends were prepared by incorporation of up to 30% weight ratios of recycled waste. The compressive strength of the resulting specimens was measured. The evolution of hydration of the cement-tile blends was analyzed by XRD and FTIR techniques. Vibrational spectroscopy presented accurate evidence of pozzolanic activity. The results of the investigation confirmed the potential use of these waste materials to produce pozzolanic cement. PMID:19124234

  18. Analysis of Thick Sandwich Shells with Embedded Ceramic Tiles

    NASA Technical Reports Server (NTRS)

    Davila, Carlos G.; Smith, C.; Lumban-Tobing, F.

    1996-01-01

    The Composite Armored Vehicle (CAV) is an advanced technology demonstrator of an all-composite ground combat vehicle. The CAV upper hull is made of a tough light-weight S2-glass/epoxy laminate with embedded ceramic tiles that serve as armor. The tiles are bonded to a rubber mat with a carefully selected, highly viscoelastic adhesive. The integration of armor and structure offers an efficient combination of ballistic protection and structural performance. The analysis of this anisotropic construction, with its inherent discontinuous and periodic nature, however, poses several challenges. The present paper describes a shell-based 'element-layering' technique that properly accounts for these effects and for the concentrated transverse shear flexibility in the rubber mat. One of the most important advantages of the element-layering technique over advanced higher-order elements is that it is based on conventional elements. This advantage allows the models to be portable to other structural analysis codes, a prerequisite in a program that involves the computational facilities of several manufacturers and government laboratories. The element-layering technique was implemented into an auto-layering program that automatically transforms a conventional shell model into a multi-layered model. The effects of tile layer homogenization, tile placement patterns, and tile gap size on the analysis results are described.

  19. Characterization of ceramic roof tile wastes as pozzolanic admixture.

    PubMed

    Lavat, Araceli E; Trezza, Monica A; Poggi, Mónica

    2009-05-01

    The aim of this work is to study the recycling of tile wastes in the manufacture of blended cements. Cracked or broken ceramic bodies are not accepted as commercial products and, therefore, the unsold waste of the ceramic industry becomes an environment problem. The use of powdered roof tile in cement production, as pozzolanic addition, is reported. The wastes were classified as nonglazed, natural and black glazed tiles. The mineralogy of the powders was controlled by SEM-EDX microscopy, XRD analysis and FTIR spectroscopy. Particle size was checked by laser granulometry. Once the materials were fully characterized, pozzolanic lime consumption tests and Fratini tests were carried out. Different formulations of cement-tile blends were prepared by incorporation of up to 30% weight ratios of recycled waste. The compressive strength of the resulting specimens was measured. The evolution of hydration of the cement-tile blends was analyzed by XRD and FTIR techniques. Vibrational spectroscopy presented accurate evidence of pozzolanic activity. The results of the investigation confirmed the potential use of these waste materials to produce pozzolanic cement.

  20. Microwave versus conventional sintering of silicon carbide tiles

    SciTech Connect

    Kass, M.D.; Caughman, J.B.O.; Forrester, S.C.; Akerman, A.

    1997-05-07

    Silicon carbide is being evaluated as an armor material because of its lightweight, high-hardness, and excellent armor efficiency. However, one of the problems associated with silicon carbide is the high cost associated with achieving fully dense tiles. Full density requires either hot pressing and sintering or reaction bonding. Past efforts have shown that hot pressed tiles have a higher armor efficiency than those produced by reaction bonded sintering. An earlier stuy showed that the acoustic properties of fully-dense silicon carbide tiles were enhanced through the use of post-sintered microwave heat treatments. One of the least expensive forming techniques is to isostatically press-and-sinter. In this study, the authors have used microwave energy to densify silicon carbide green bodies. Microwave sintering has been demonstrated to be a very quick way to sinter ceramics such as alumina to exceptionally high densities. Previous work has shown that microwave post treatment of fully-dense reaction bonded silicon carbide tiles significantly improves the acoustic properties of the tiles. These properties include Poisson`s ratio, Young`s modulus, shear modulus, and bulk modulus.

  1. Magnetic arrays

    DOEpatents

    Trumper, David L.; Kim, Won-jong; Williams, Mark E.

    1997-05-20

    Electromagnet arrays which can provide selected field patterns in either two or three dimensions, and in particular, which can provide single-sided field patterns in two or three dimensions. These features are achieved by providing arrays which have current densities that vary in the windings both parallel to the array and in the direction of array thickness.

  2. Magnetic arrays

    DOEpatents

    Trumper, D.L.; Kim, W.; Williams, M.E.

    1997-05-20

    Electromagnet arrays are disclosed which can provide selected field patterns in either two or three dimensions, and in particular, which can provide single-sided field patterns in two or three dimensions. These features are achieved by providing arrays which have current densities that vary in the windings both parallel to the array and in the direction of array thickness. 12 figs.

  3. Static calibration for measurement of loads in wind tunnel tests on Shuttle surface tiles

    NASA Technical Reports Server (NTRS)

    Rummler, D. R.; Pinson, L. D.

    1982-01-01

    A description is given of the procedures used for the static calibrations of the Coe (1981) sensor array to determine normal force, pitching moment, and rolling moment from the ensemble of sensor outputs. The use of independent data to confirm the validity of the calibration is also described. Two methods are used in calibrating the Coe sensors. In the first, calibration loads and readings are arranged in matrix form and are assumed to be related in a linear fashion. In the second, each Coe sensor reading is regarded as a sum of contributions from each of the calibration loads. It is shown that the Coe load sensors, in conjunction with either of two data analysis methods, can be used to determine the forces and moments experienced by a Shuttle TPS tile.

  4. Frequent deletion of CDKN2A and recurrent coamplification of KIT, PDGFRA, and KDR in fibrosarcoma of bone--an array comparative genomic hybridization study.

    PubMed

    Niini, Tarja; López-Guerrero, José Antonio; Ninomiya, Shinsuke; Guled, Mohamed; Hattinger, Claudia Maria; Michelacci, Francesca; Böhling, Tom; Llombart-Bosch, Antonio; Picci, Piero; Serra, Massimo; Knuutila, Sakari

    2010-02-01

    Very little is known about the genetics of fibrosarcoma (FS) of bone. We applied array comparative genomic hybridization (CGH) to identify genes and genomic regions with potential role in the pathogenesis of this tumor. Seventeen patients with FS of bone were included in the study. Array CGH analysis was carried out in 13 fresh frozen tissue specimens from 11 of these patients (nine primary tumors and four local recurrences). DNA was extracted and hybridizations were performed on Agilent 244K CGH oligoarrays. The data were analyzed using Agilent DNA Analytics Software. The number of changes per patient ranged from 0 to 132 (average = 43). Losses were most commonly detected at 6q, 8p, 9p, 10, 13q, and 20p. CDKN2A was homozygously deleted in 7/11 patients. Hypermethylation of both p16(INK4a) and p14(ARF) was found in 1/14 patients. An internal deletion of STARD13 was found in a region with common losses at 13q13.1. The most frequent gains were seen at 1q, 4q, 5p, 8q, 12p, 15q, 16q, 17q, 20q, 22q, and Xp. Single recurrent high level amplification was detected at 4q12, including KIT, PDGFRA, and KDR. No activating mutations were found in any of them. Immunohistochemistry revealed expression of PDGFRA and/or PDGFRB in 12/17 samples. Moreover, small regions of gains pinpointed genes of particular interest, such as IGF1R at 15q26.3 and CHD1L at 1q21.1. In conclusion, our analysis provided novel findings that can be exploited when searching for markers for diagnosis and prognosis, and targets of therapy in this tumor type.

  5. Monte Carlo estimation of the number of tatami tilings

    NASA Astrophysics Data System (ADS)

    Kimura, Kenji; Higuchi, Saburo

    2016-04-01

    Motivated by the way Japanese tatami mats are placed on the floor, we consider domino tilings with a constraint and estimate the number of such tilings of plane regions. We map the system onto a monomer-dimer model with a novel local interaction on the dual lattice. We make use of a variant of the Hamiltonian replica exchange Monte Carlo method where data for ferromagnetic and anti-ferromagnetic models are combined to make a single family of histograms. The properties of the density of states is studied beyond exact enumeration and combinatorial methods. The logarithm of the number of the tilings is linear in the boundary length of the region for all the regions studied.

  6. Web system to support analysis of the Tile Calorimeter commissioning

    NASA Astrophysics Data System (ADS)

    Maidantchik, C.; Faria, A.; Grael, F. F.; Ferreira, F. G.; Galvão, K. K.; Dotti, A.; Solans, C.; Price, L.

    2008-07-01

    This article describes the set of computer systems that support the data analysis and quality control during the Tile Calorimeter commissioning phase. The Tile Commissioning Web System (TCWS) encapsulates the steps to retrieve information, execute programs, access the outcomes, register statements and verify the equipment status. TCWS integrates different applications, each one presenting a particular view of the commissioning process. The TileComm Analysis stores plots and analysis results, provides equipment-oriented visualization, collects information regarding the equipment performance, and outlines its status in each test. The Timeline application provides the equipment status history in a chronological way. The Web Interface for Shifters supports monitoring tasks by managing test parameters, graphical views of the detector's performance, and information status of all equipment that was used in each test. The DCS Web System provides a standard way to verify the behaviour of power sources and the cooling system.

  7. Flow and heat transfer in space vehicle tile gaps

    NASA Technical Reports Server (NTRS)

    Garimella, S. V.; Shollenberger, K. A.; Eibeck, P. A.; White, S.

    1992-01-01

    The flow patterns and the characteristics of the convective heat transfer in intersecting tile gaps on space vehicles were experimentally investigated using a water channel flow facility for simulating flow conditions in the tile gaps on the Aeroassist Flight Experiment (AFE) vehicle. It was found that penetration of external flow into the perpendicular gap was limited in most cases to roughly two gap widths, while greater entrainment occurred in the parallel gap. Heat transfer in the bulk of the perpendicular gap occurred by natural convection. The Reynolds number and the relative tile-height differences had the strongest influence on heat transfer and affected both the magnitude and the symmetry of the temperature and the flow fields.

  8. Flutter Analysis of the Shuttle Tile Overlay Repair Concept

    NASA Technical Reports Server (NTRS)

    Bey, Kim S.; Scott, Robert C.; Bartels, Robert E.; Waters, William A.; Chen, Roger

    2007-01-01

    The Space Shuttle tile overlay repair concept, developed at the NASA Johnson Space Center, is designed for on-orbit installation over an area of damaged tile to permit safe re-entry. The thin flexible plate is placed over the damaged area and secured to tile at discreet points around its perimeter. A series of flutter analyses were performed to determine if the onset of flutter met the required safety margins. Normal vibration modes of the panel, obtained from a simplified structural analysis of the installed concept, were combined with a series of aerodynamic analyses of increasing levels of fidelity in terms of modeling the flow physics to determine the onset of flutter. Results from these analyses indicate that it is unlikely that the overlay installed at body point 1800 will flutter during re-entry.

  9. Mechanical construction and installation of the ATLAS tile calorimeter

    NASA Astrophysics Data System (ADS)

    Abdallah, J.; Adragna, P.; Alexa, C.; Alves, R.; Amaral, P.; Ananiev, A.; Anderson, K.; Andresen, X.; Antonaki, A.; Batusov, V.; Bednar, P.; Behrens, A.; Bergeaas, E.; Biscarat, C.; Blanch, O.; Blanchot, G.; Blocki, J.; Bohm, C.; Boldea, V.; Bosi, F.; Bosman, M.; Bromberg, C.; Brunel, B.; Budagov, J.; Calderón, D.; Calvet, D.; Cardeira, C.; Carli, T.; Carvalho, J.; Cascella, M.; Castillo, M. V.; Costello, J.; Cavalli-Sforza, M.; Cavasinni, V.; Cerqueira, A. S.; Clement, C.; Cobal, M.; Cogswell, F.; Constantinescu, S.; Costanzo, D.; Da Silva, P.; David, M.; Davidek, T.; Dawson, J.; De, K.; Del Prete, T.; Di Girolamo, B.; Dita, S.; Dolejsi, J.; Dolezal, Z.; Dotti, A.; Downing, R.; Drake, G.; Efthymiopoulos, I.; Errede, D.; Errede, S.; Farbin, A.; Fassouliotis, D.; Feng, E.; Fenyuk, A.; Ferdi, C.; Ferreira, B. C.; Ferrer, A.; Ferrer, J.; Flaminio, V.; Flix, J.; Francavilla, P.; Fullana, E.; Garde, V.; Gayde, J. C.; Gellerstedt, K.; Giakoumopoulou, V.; Giangiobbe, V.; Gildemeister, O.; Gilewsky, V.; Giokaris, N.; Gollub, N.; Gomes, A.; Gonzalez, V.; Gouveia, J.; Grenier, P.; Gris, P.; Grudzinski, J.; Guarino, V.; Guicheney, C.; Gupta, A.; Hakobyan, H.; Haney, M.; Hellman, S.; Henriques, A.; Higon, E.; Hill, N.; Holmgren, S.; Hruska, I.; Hurwitz, M.; Huston, J.; Jen-La Plante, I.; Jon-And, K.; Junk, T.; Karyukhin, A.; Khubua, J.; Klereborn, J.; Kopikov, S.; Korolkov, I.; Krivkova, P.; Kulchitsky, Y.; Kurochkin, Y.; Kuzhir, P.; Lapin, V.; Lasseur, C.; LeCompte, T.; Lefevre, R.; Leitner, R.; Li, J.; Lyablin, M.; Lim, H.; Lokajicek, M.; Lomakin, Y.; Lourtie, P.; Lovas, L.; Lupi, A.; Maidantchik, C.; Maio, A.; Maliukov, S.; Manousakis, A.; Marques, C.; Marroquim, F.; Martin, F.; Mazzoni, E.; Mergelkuhl, D.; Merritt, F.; Miagkov, A.; Miller, R.; Minashvili, I.; Miralles, L.; Montarou, G.; Nemecek, S.; Nessi, M.; Nikitine, I.; Nodulman, L.; Norniella, O.; Nyman, T.; Onofre, A.; Oreglia, M.; Palan, B.; Pallin, D.; Pantea, D.; Pereira, A.; Pilcher, J.; Pina, J.; Pinhão, J.; Pod, E.; Podlyski, F.; Portell, X.; Poveda, J.; Pribyl, L.; Price, L. E.; Proudfoot, J.; Ramalho, M.; Ramstedt, M.; Raposeiro, L.; Reis, J.; Richards, R.; Roda, C.; Romanov, V.; Rose-Dulcina, L.; Rosnet, P.; Roy, P.; Ruiz, A.; Rumiantsau, V.; Russakovich, N.; da Costa, J. Sa; Salto, O.; Salvachua, B.; Sanchis, E.; Sanders, H.; Santoni, C.; Santos, J.; Saraiva, J. G.; Sarri, F.; Says, L.-P.; Schlager, G.; Schlereth, J.; Seixas, J. M.; Selldèn, B.; Shalanda, N.; Shchelchkov, A.; Shevtsov, P.; Shochet, M.; Silva, J.; Simaitis, V.; Simonyan, M.; Sissakian, A.; Sjoelin, J.; Skrzecz, F.; Solans, C.; Solodkov, A.; Solovianov, O.; Sorokina, J.; Sosebee, M.; Spano, F.; Speckmeyer, P.; Stanek, R.; Starchenko, E.; Starovoitov, P.; Suk, M.; Sykora, I.; Tang, F.; Tas, P.; Teuscher, R.; Tokar, S.; Topilin, N.; Torres, J.; Underwood, D.; Usai, G.; Utkin, V.; Valero, A.; Valkar, S.; Valls, J. A.; Vartapetian, A.; Vazeille, F.; Vellidis, C.; Ventura, F.; Vichou, I.; Vivarelli, I.; Volpi, M.; White, A.; Wood, K.; Zaitsev, A.; Zenin, A.; Zenis, T.; Zenonos, Z.; Zenz, S.; Zilka, B.

    2013-11-01

    This paper summarises the mechanical construction and installation of the Tile Calorimeter for the ATLAS experiment at the Large Hadron Collider in CERN, Switzerland. The Tile Calorimeter is a sampling calorimeter using scintillator as the sensitive detector and steel as the absorber and covers the central region of the ATLAS experiment up to pseudorapidities ±1.7. The mechanical construction of the Tile Calorimeter occurred over a period of about 10 years beginning in 1995 with the completion of the Technical Design Report and ending in 2006 with the installation of the final module in the ATLAS cavern. During this period approximately 2600 metric tons of steel were transformed into a laminated structure to form the absorber of the sampling calorimeter. Following instrumentation and testing, which is described elsewhere, the modules were installed in the ATLAS cavern with a remarkable accuracy for a structure of this size and weight.

  10. Solare Cell Roof Tile And Method Of Forming Same

    DOEpatents

    Hanoka, Jack I.; Real, Markus

    1999-11-16

    A solar cell roof tile includes a front support layer, a transparent encapsulant layer, a plurality of interconnected solar cells and a backskin layer. The front support layer is formed of light transmitting material and has first and second surfaces. The transparent encapsulant layer is disposed adjacent the second surface of the front support layer. The interconnected solar cells has a first surface disposed adjacent the transparent encapsulant layer. The backskin layer has a first surface disposed adjacent a second surface of the interconnected solar cells, wherein a portion of the backskin layer wraps around and contacts the first surface of the front support layer to form the border region. A portion of the border region has an extended width. The solar cell roof tile may have stand-offs disposed on the extended width border region for providing vertical spacing with respect to an adjacent solar cell roof tile.

  11. Fly ash of mineral coal as ceramic tiles raw material.

    PubMed

    Zimmer, A; Bergmann, C P

    2007-01-01

    The aim of this work was to evaluate the use of mineral coal fly ash as a raw material in the production of ceramic tiles. The samples of fly ash came from Capivari de Baixo, a city situated in the Brazilian Federal State of Santa Catarina. The fly ash and the raw materials were characterized regarding their physical chemical properties, and, based on these results; batches containing fly ash and typical raw materials for ceramic tiles were prepared. The fly ash content in the batches varied between 20 and 80 wt%. Specimens were molded using a uniaxial hydraulic press and were fired. All batches containing ash up to 60 wt% present adequate properties to be classified as several kinds of products in the ISO 13006 standard () regarding its different absorption groups (pressed). The results obtained indicate that fly ash, when mixed with traditional raw materials, has the necessary requirements to be used as a raw material for production of ceramic tiles.

  12. Genome-Wide Survey of Cold Stress Regulated Alternative Splicing in Arabidopsis thaliana with Tiling Microarray

    PubMed Central

    Leviatan, Noam; Alkan, Noam; Leshkowitz, Dena; Fluhr, Robert

    2013-01-01

    Alternative splicing plays a major role in expanding the potential informational content of eukaryotic genomes. It is an important post-transcriptional regulatory mechanism that can increase protein diversity and affect mRNA stability. Alternative splicing is often regulated in a tissue-specific and stress-responsive manner. Cold stress, which adversely affects plant growth and development, regulates the transcription and splicing of plant splicing factors. This can affect the pre-mRNA processing of many genes. To identify cold regulated alternative splicing we applied Affymetrix Arabidopsis tiling arrays to survey the transcriptome under cold treatment conditions. A novel algorithm was used for detection of statistically relevant changes in intron expression within a transcript between control and cold growth conditions. A reverse transcription polymerase chain reaction (RT-PCR) analysis of a number of randomly selected genes confirmed the changes in splicing patterns under cold stress predicted by tiling array. Our analysis revealed new types of cold responsive genes. While their expression level remains relatively unchanged under cold stress their splicing pattern shows detectable changes in the relative abundance of isoforms. The majority of cold regulated alternative splicing introduced a premature termination codon (PTC) into the transcripts creating potential targets for degradation by the nonsense mediated mRNA decay (NMD) process. A number of these genes were analyzed in NMD-defective mutants by RT-PCR and shown to evade NMD. This may result in new and truncated proteins with altered functions or dominant negative effects. The results indicate that cold affects both quantitative and qualitative aspects of gene expression. PMID:23776682

  13. PHASE CHANGE MATERIALS IN FLOOR TILES FOR THERMAL ENERGY STORAGE

    SciTech Connect

    Douglas C. Hittle

    2002-10-01

    Passive solar systems integrated into residential structures significantly reduce heating energy consumption. Taking advantage of latent heat storage has further increased energy savings. This is accomplished by the incorporation of phase change materials into building materials used in passive applications. Trombe walls, ceilings and floors can all be enhanced with phase change materials. Increasing the thermal storage of floor tile by the addition of encapsulated paraffin wax is the proposed topic of research. Latent heat storage of a phase change material (PCM) is obtained during a change in phase. Typical materials use the latent heat released when the material changes from a liquid to a solid. Paraffin wax and salt hydrates are examples of such materials. Other PCMs that have been recently investigated undergo a phase transition from one solid form to another. During this process they will release heat. These are known as solid-state phase change materials. All have large latent heats, which makes them ideal for passive solar applications. Easy incorporation into various building materials is must for these materials. This proposal will address the advantages and disadvantages of using these materials in floor tile. Prototype tile will be made from a mixture of quartz, binder and phase change material. The thermal and structural properties of the prototype tiles will be tested fully. It is expected that with the addition of the phase change material the structural properties will be compromised to some extent. The ratio of phase change material in the tile will have to be varied to determine the best mixture to provide significant thermal storage, while maintaining structural properties that meet the industry standards for floor tile.

  14. Comparative analytical evaluation of the respiratory TaqMan Array Card with real-time PCR and commercial multi-pathogen assays.

    PubMed

    Harvey, John J; Chester, Stephanie; Burke, Stephen A; Ansbro, Marisela; Aden, Tricia; Gose, Remedios; Sciulli, Rebecca; Bai, Jing; DesJardin, Lucy; Benfer, Jeffrey L; Hall, Joshua; Smole, Sandra; Doan, Kimberly; Popowich, Michael D; St George, Kirsten; Quinlan, Tammy; Halse, Tanya A; Li, Zhen; Pérez-Osorio, Ailyn C; Glover, William A; Russell, Denny; Reisdorf, Erik; Whyte, Thomas; Whitaker, Brett; Hatcher, Cynthia; Srinivasan, Velusamy; Tatti, Kathleen; Tondella, Maria Lucia; Wang, Xin; Winchell, Jonas M; Mayer, Leonard W; Jernigan, Daniel; Mawle, Alison C

    2016-02-01

    In this study, a multicenter evaluation of the Life Technologies TaqMan(®) Array Card (TAC) with 21 custom viral and bacterial respiratory assays was performed on the Applied Biosystems ViiA™ 7 Real-Time PCR System. The goal of the study was to demonstrate the analytical performance of this platform when compared to identical individual pathogen specific laboratory developed tests (LDTs) designed at the Centers for Disease Control and Prevention (CDC), equivalent LDTs provided by state public health laboratories, or to three different commercial multi-respiratory panels. CDC and Association of Public Health Laboratories (APHL) LDTs had similar analytical sensitivities for viral pathogens, while several of the bacterial pathogen APHL LDTs demonstrated sensitivities one log higher than the corresponding CDC LDT. When compared to CDC LDTs, TAC assays were generally one to two logs less sensitive depending on the site performing the analysis. Finally, TAC assays were generally more sensitive than their counterparts in three different commercial multi-respiratory panels. TAC technology allows users to spot customized assays and design TAC layout, simplify assay setup, conserve specimen, dramatically reduce contamination potential, and as demonstrated in this study, analyze multiple samples in parallel with good reproducibility between instruments and operators.

  15. Comparative analytical evaluation of the respiratory TaqMan Array Card with real-time PCR and commercial multi-pathogen assays.

    PubMed

    Harvey, John J; Chester, Stephanie; Burke, Stephen A; Ansbro, Marisela; Aden, Tricia; Gose, Remedios; Sciulli, Rebecca; Bai, Jing; DesJardin, Lucy; Benfer, Jeffrey L; Hall, Joshua; Smole, Sandra; Doan, Kimberly; Popowich, Michael D; St George, Kirsten; Quinlan, Tammy; Halse, Tanya A; Li, Zhen; Pérez-Osorio, Ailyn C; Glover, William A; Russell, Denny; Reisdorf, Erik; Whyte, Thomas; Whitaker, Brett; Hatcher, Cynthia; Srinivasan, Velusamy; Tatti, Kathleen; Tondella, Maria Lucia; Wang, Xin; Winchell, Jonas M; Mayer, Leonard W; Jernigan, Daniel; Mawle, Alison C

    2016-02-01

    In this study, a multicenter evaluation of the Life Technologies TaqMan(®) Array Card (TAC) with 21 custom viral and bacterial respiratory assays was performed on the Applied Biosystems ViiA™ 7 Real-Time PCR System. The goal of the study was to demonstrate the analytical performance of this platform when compared to identical individual pathogen specific laboratory developed tests (LDTs) designed at the Centers for Disease Control and Prevention (CDC), equivalent LDTs provided by state public health laboratories, or to three different commercial multi-respiratory panels. CDC and Association of Public Health Laboratories (APHL) LDTs had similar analytical sensitivities for viral pathogens, while several of the bacterial pathogen APHL LDTs demonstrated sensitivities one log higher than the corresponding CDC LDT. When compared to CDC LDTs, TAC assays were generally one to two logs less sensitive depending on the site performing the analysis. Finally, TAC assays were generally more sensitive than their counterparts in three different commercial multi-respiratory panels. TAC technology allows users to spot customized assays and design TAC layout, simplify assay setup, conserve specimen, dramatically reduce contamination potential, and as demonstrated in this study, analyze multiple samples in parallel with good reproducibility between instruments and operators. PMID:26640122

  16. High-Performance Tiled WMS and KML Web Server

    NASA Technical Reports Server (NTRS)

    Plesea, Lucian

    2007-01-01

    This software is an Apache 2.0 module implementing a high-performance map server to support interactive map viewers and virtual planet client software. It can be used in applications that require access to very-high-resolution geolocated images, such as GIS, virtual planet applications, and flight simulators. It serves Web Map Service (WMS) requests that comply with a given request grid from an existing tile dataset. It also generates the KML super-overlay configuration files required to access the WMS image tiles.

  17. Tony Rollins fashions a new tile for the Space Shuttle orbiter

    NASA Technical Reports Server (NTRS)

    1998-01-01

    In the Tile Fabrication Shop, Tony Rollins, with United Space Alliance, holds down a curtain while making a test sample of tile on a block 5-axis computerized numerical control milling machine. About 70 percent of a Space Shuttle orbiter's external surface is shielded from heat by a network of more than 24,000 tiles formed from a silica fiber compound. They are known as High-Temperature Reusable Surface Insulation (HRSI) tiles and Low-Temperature Reusable Surface Insulation (LRSI) tiles. Most HRSI tiles are 6 inches square, but may be as large as 12 inches in some areas, and 1 to 5 inches thick. LRSI tiles are generally 8 inches square, ranging from 0.2- to 1-inch thick. More advanced materials such as Flexible Insulation Blankets have replaced tiles on some upper surfaces of the orbiter.

  18. An automated data management/analysis system for space shuttle orbiter tiles. [stress analysis

    NASA Technical Reports Server (NTRS)

    Giles, G. L.; Ballas, M.

    1982-01-01

    An engineering data management system was combined with a nonlinear stress analysis program to provide a capability for analyzing a large number of tiles on the space shuttle orbiter. Tile geometry data and all data necessary of define the tile loads environment accessed automatically as needed for the analysis of a particular tile or a set of tiles. User documentation provided includes: (1) description of computer programs and data files contained in the system; (2) definitions of all engineering data stored in the data base; (3) characteristics of the tile anaytical model; (4) instructions for preparation of user input; and (5) a sample problem to illustrate use of the system. Description of data, computer programs, and analytical models of the tile are sufficiently detailed to guide extension of the system to include additional zones of tiles and/or additional types of analyses

  19. GROWTH EVALUATION OF FUNGI (PENICILLIUM AND ASPERGILLUS SPP.) ON CEILING TILES

    EPA Science Inventory

    The paper gives results of an evaluation of the potential for fungal growth on four different ceiling tiles in static chambers. It was found that even new ceiling tiles supported fungal growth under favorable conditions. Used ceiling tiles appeared to be more susceptible to funga...

  20. Nitrogen, phosphorus, and bacteria tile and groundwater quality following direct injection of dewatered municipal biosolids into soil.

    PubMed

    Gottschall, N; Edwards, M; Topp, E; Bolton, P; Payne, M; Curnoe, W E; Coelho, B Ball; Lapen, D R

    2009-01-01

    Application of municipal biosolids (sewage) to agricultural land is a common practice to improve soil physical quality and fertility. The chosen method of land application can have a strong impact on the extent of adjacent water contamination by nutrients and bacteria. Dewatered municipal biosolids (DMB) were applied to silt-clay loam experimental field plots in Ontario, Canada using two application methods: (i) surface spreading followed by shallow incorporation (SS) and (ii) a newly developed implement that directly injects DMB into the topsoil (DI). The objective of this study was to compare N, P, and bacteria quality of tile drainage and shallow groundwater associated with each land application technique. There were no significant differences (P > 0.05) in N, P, and bacteria tile mass loads among the application treatments for time periods <100 d postapplication, when the greatest peak loads and peak tile water concentrations were observed. Both land application treatments caused groundwater Escherichia coli contamination to at least 1.2 m depth below surface after the first postapplication rainfall event, and NO(3)-N contamination to at least 2.0 m depth below surface. The DI treatment did, however, have significantly (P < 0.05) higher tile mass loads of total Kjeldahl N (TKN), total phosphorus (TP), E. coli, Enterococci, and Clostridium perfringens relative to the SS treatment for time periods >100 d postapplication. Nevertheless, relative to tile effluent data collected <100 d postapplication (no application treatment differences), peak loads, and concentrations during this time were, overall, considerably lower for both treatments. This finding, along with no significant differences in N, P, and bacteria groundwater concentrations among the application treatments, and that the direct injection technique could potentially reduce vector attraction problems and odor, suggests that the direct injection technique should be considered a dewatered municipal

  1. Sensitivity Analysis of the Agricultural Policy/Environmental eXtender (APEX) for Phosphorus Loads in Tile-Drained Landscapes.

    PubMed

    Ford, W; King, K; Williams, M; Williams, J; Fausey, N

    2015-07-01

    Numerical modeling is an economical and feasible approach for quantifying the effects of best management practices on dissolved reactive phosphorus (DRP) loadings from agricultural fields. However, tools that simulate both surface and subsurface DRP pathways are limited and have not been robustly evaluated in tile-drained landscapes. The objectives of this study were to test the ability of the Agricultural Policy/Environmental eXtender (APEX), a widely used field-scale model, to simulate surface and tile P loadings over management, hydrologic, biologic, tile, and soil gradients and to better understand the behavior of P delivery at the edge-of-field in tile-drained midwestern landscapes. To do this, a global, variance-based sensitivity analysis was performed, and model outputs were compared with measured P loads obtained from 14 surface and subsurface edge-of-field sites across central and northwestern Ohio. Results of the sensitivity analysis showed that response variables for DRP were highly sensitive to coupled interactions between presumed important parameters, suggesting nonlinearity of DRP delivery at the edge-of-field. Comparison of model results to edge-of-field data showcased the ability of APEX to simulate surface and subsurface runoff and the associated DRP loading at monthly to annual timescales; however, some high DRP concentrations and fluxes were not reflected in the model, suggesting the presence of preferential flow. Results from this study provide new insights into baseline tile DRP loadings that exceed thresholds for algal proliferation. Further, negative feedbacks between surface and subsurface DRP delivery suggest caution is needed when implementing DRP-based best management practices designed for a specific flow pathway. PMID:26437091

  2. Nitrogen, phosphorus, and bacteria tile and groundwater quality following direct injection of dewatered municipal biosolids into soil.

    PubMed

    Gottschall, N; Edwards, M; Topp, E; Bolton, P; Payne, M; Curnoe, W E; Coelho, B Ball; Lapen, D R

    2009-01-01

    Application of municipal biosolids (sewage) to agricultural land is a common practice to improve soil physical quality and fertility. The chosen method of land application can have a strong impact on the extent of adjacent water contamination by nutrients and bacteria. Dewatered municipal biosolids (DMB) were applied to silt-clay loam experimental field plots in Ontario, Canada using two application methods: (i) surface spreading followed by shallow incorporation (SS) and (ii) a newly developed implement that directly injects DMB into the topsoil (DI). The objective of this study was to compare N, P, and bacteria quality of tile drainage and shallow groundwater associated with each land application technique. There were no significant differences (P > 0.05) in N, P, and bacteria tile mass loads among the application treatments for time periods <100 d postapplication, when the greatest peak loads and peak tile water concentrations were observed. Both land application treatments caused groundwater Escherichia coli contamination to at least 1.2 m depth below surface after the first postapplication rainfall event, and NO(3)-N contamination to at least 2.0 m depth below surface. The DI treatment did, however, have significantly (P < 0.05) higher tile mass loads of total Kjeldahl N (TKN), total phosphorus (TP), E. coli, Enterococci, and Clostridium perfringens relative to the SS treatment for time periods >100 d postapplication. Nevertheless, relative to tile effluent data collected <100 d postapplication (no application treatment differences), peak loads, and concentrations during this time were, overall, considerably lower for both treatments. This finding, along with no significant differences in N, P, and bacteria groundwater concentrations among the application treatments, and that the direct injection technique could potentially reduce vector attraction problems and odor, suggests that the direct injection technique should be considered a dewatered municipal

  3. UAVSAR Phased Array Aperture

    NASA Technical Reports Server (NTRS)

    Chamberlain, Neil; Zawadzki, Mark; Sadowy, Greg; Oakes, Eric; Brown, Kyle; Hodges, Richard

    2009-01-01

    This paper describes the development of a patch antenna array for an L-band repeat-pass interferometric synthetic aperture radar (InSAR) instrument that is to be flown on an unmanned aerial vehicle (UAV). The antenna operates at a center frequency of 1.2575 GHz and with a bandwidth of 80 MHz, consistent with a number of radar instruments that JPL has previously flown. The antenna is designed to radiate orthogonal linear polarizations in order to facilitate fully-polarimetric measurements. Beam-pointing requirements for repeat-pass SAR interferometry necessitate electronic scanning in azimuth over a range of -20degrees in order to compensate for aircraft yaw. Beam-steering is accomplished by transmit/receive (T/R) modules and a beamforming network implemented in a stripline circuit board. This paper, while providing an overview of phased array architecture, focuses on the electromagnetic design of the antenna tiles and associated interconnects. An important aspect of the design of this antenna is that it has an amplitude taper of 10dB in the elevation direction. This is to reduce multipath reflections from the wing that would otherwise be detrimental to interferometric radar measurements. This taper is provided by coupling networks in the interconnect circuits as opposed to attenuating the output of the T/R modules. Details are given of material choices and fabrication techniques that meet the demanding environmental conditions that the antenna must operate in. Predicted array performance is reported in terms of co-polarized and crosspolarized far-field antenna patterns, and also in terms of active reflection coefficient.

  4. Designing linear systolic arrays

    SciTech Connect

    Kumar, V.K.P.; Tsai, Y.C. . Dept. of Electrical Engineering)

    1989-12-01

    The authors develop a simple mapping technique to design linear systolic arrays. The basic idea of the technique is to map the computations of a certain class of two-dimensional systolic arrays onto one-dimensional arrays. Using this technique, systolic algorithms are derived for problems such as matrix multiplication and transitive closure on linearly connected arrays of PEs with constant I/O bandwidth. Compared to known designs in the literature, the technique leads to modular systolic arrays with constant hardware in each PE, few control lines, lexicographic data input/output, and improved delay time. The unidirectional flow of control and data in this design assures implementation of the linear array in the known fault models of wafer scale integration.

  5. Task 4 supporting technology. Part 1: Detailed test plan for leading edge tile development. Leading edge material development and testing

    NASA Astrophysics Data System (ADS)

    Hogenson, P. A.; Staszak, Paul; Hinkle, Karrie

    1995-05-01

    This task develops two alternative candidate tile materials for leading edge applications: coated alumina enhanced thermal barrier (AETB) tile and silicone impregnated reusable ceramic ablator (SIRCA) tile. Upon reentry of the X-33/RLV space vehicle, the leading edges experience the highest heating rates and temperatures. The wing leading edge and nose cap experience peak temperatures in the range 2000 to 2700 F. Replacing reinforced carbon-carbon (RCC) with tile-based thermal protection system (TPS) materials is the primary objective. Weight, complexity, coating impact damage, and repairability are among the problems that this tile technology development addresses. The following subtasks will be performed in this development effort: tile coating development; SIRCA tile development; robustness testing of tiles; tile repair development; tile operations/processing; tile leading edge configuration; and life cycle testing.

  6. Task 4 supporting technology. Part 1: Detailed test plan for leading edge tile development. Leading edge material development and testing

    NASA Technical Reports Server (NTRS)

    Hogenson, P. A.; Staszak, Paul; Hinkle, Karrie

    1995-01-01

    This task develops two alternative candidate tile materials for leading edge applications: coated alumina enhanced thermal barrier (AETB) tile and silicone impregnated reusable ceramic ablator (SIRCA) tile. Upon reentry of the X-33/RLV space vehicle, the leading edges experience the highest heating rates and temperatures. The wing leading edge and nose cap experience peak temperatures in the range 2000 to 2700 F. Replacing reinforced carbon-carbon (RCC) with tile-based thermal protection system (TPS) materials is the primary objective. Weight, complexity, coating impact damage, and repairability are among the problems that this tile technology development addresses. The following subtasks will be performed in this development effort: tile coating development; SIRCA tile development; robustness testing of tiles; tile repair development; tile operations/processing; tile leading edge configuration; and life cycle testing.

  7. Risk assessment models in genetics clinic for array comparative genomic hybridization: Clinical information can be used to predict the likelihood of an abnormal result in patients

    PubMed Central

    Marano, Rachel M.; Mercurio, Laura; Kanter, Rebecca; Doyle, Richard; Abuelo, Dianne; Morrow, Eric M.; Shur, Natasha

    2013-01-01

    Array comparative genomic hybridization (aCGH) testing can diagnose chromosomal microdeletions and duplications too small to be detected by conventional cytogenetic techniques. We need to consider which patients are more likely to receive a diagnosis from aCGH testing versus patients that have lower likelihood and may benefit from broader genome wide scanning. We retrospectively reviewed charts of a population of 200 patients, 117 boys and 83 girls, who underwent aCGH testing in Genetics Clinic at Rhode Island hospital between 1 January/2008 and 31 December 2010. Data collected included sex, age at initial clinical presentation, aCGH result, history of seizures, autism, dysmorphic features, global developmental delay/intellectual disability, hypotonia and failure to thrive. aCGH analysis revealed abnormal results in 34 (17%) and variants of unknown significance in 24 (12%). Patients with three or more clinical diagnoses had a 25.0% incidence of abnormal aCGH findings, while patients with two or fewer clinical diagnoses had a 12.5% incidence of abnormal aCGH findings. Currently, we provide families with a range of 10–30% of a diagnosis with aCGH testing. With increased clinical complexity, patients have an increased probability of having an abnormal aCGH result. With this, we can provide individualized risk estimates for each patient. PMID:27625836

  8. Risk assessment models in genetics clinic for array comparative genomic hybridization: Clinical information can be used to predict the likelihood of an abnormal result in patients.

    PubMed

    Marano, Rachel M; Mercurio, Laura; Kanter, Rebecca; Doyle, Richard; Abuelo, Dianne; Morrow, Eric M; Shur, Natasha

    2013-03-01

    Array comparative genomic hybridization (aCGH) testing can diagnose chromosomal microdeletions and duplications too small to be detected by conventional cytogenetic techniques. We need to consider which patients are more likely to receive a diagnosis from aCGH testing versus patients that have lower likelihood and may benefit from broader genome wide scanning. We retrospectively reviewed charts of a population of 200 patients, 117 boys and 83 girls, who underwent aCGH testing in Genetics Clinic at Rhode Island hospital between 1 January/2008 and 31 December 2010. Data collected included sex, age at initial clinical presentation, aCGH result, history of seizures, autism, dysmorphic features, global developmental delay/intellectual disability, hypotonia and failure to thrive. aCGH analysis revealed abnormal results in 34 (17%) and variants of unknown significance in 24 (12%). Patients with three or more clinical diagnoses had a 25.0% incidence of abnormal aCGH findings, while patients with two or fewer clinical diagnoses had a 12.5% incidence of abnormal aCGH findings. Currently, we provide families with a range of 10-30% of a diagnosis with aCGH testing. With increased clinical complexity, patients have an increased probability of having an abnormal aCGH result. With this, we can provide individualized risk estimates for each patient.

  9. Risk assessment models in genetics clinic for array comparative genomic hybridization: Clinical information can be used to predict the likelihood of an abnormal result in patients.

    PubMed

    Marano, Rachel M; Mercurio, Laura; Kanter, Rebecca; Doyle, Richard; Abuelo, Dianne; Morrow, Eric M; Shur, Natasha

    2013-03-01

    Array comparative genomic hybridization (aCGH) testing can diagnose chromosomal microdeletions and duplications too small to be detected by conventional cytogenetic techniques. We need to consider which patients are more likely to receive a diagnosis from aCGH testing versus patients that have lower likelihood and may benefit from broader genome wide scanning. We retrospectively reviewed charts of a population of 200 patients, 117 boys and 83 girls, who underwent aCGH testing in Genetics Clinic at Rhode Island hospital between 1 January/2008 and 31 December 2010. Data collected included sex, age at initial clinical presentation, aCGH result, history of seizures, autism, dysmorphic features, global developmental delay/intellectual disability, hypotonia and failure to thrive. aCGH analysis revealed abnormal results in 34 (17%) and variants of unknown significance in 24 (12%). Patients with three or more clinical diagnoses had a 25.0% incidence of abnormal aCGH findings, while patients with two or fewer clinical diagnoses had a 12.5% incidence of abnormal aCGH findings. Currently, we provide families with a range of 10-30% of a diagnosis with aCGH testing. With increased clinical complexity, patients have an increased probability of having an abnormal aCGH result. With this, we can provide individualized risk estimates for each patient. PMID:27625836

  10. Risk assessment models in genetics clinic for array comparative genomic hybridization: Clinical information can be used to predict the likelihood of an abnormal result in patients

    PubMed Central

    Marano, Rachel M.; Mercurio, Laura; Kanter, Rebecca; Doyle, Richard; Abuelo, Dianne; Morrow, Eric M.; Shur, Natasha

    2013-01-01

    Array comparative genomic hybridization (aCGH) testing can diagnose chromosomal microdeletions and duplications too small to be detected by conventional cytogenetic techniques. We need to consider which patients are more likely to receive a diagnosis from aCGH testing versus patients that have lower likelihood and may benefit from broader genome wide scanning. We retrospectively reviewed charts of a population of 200 patients, 117 boys and 83 girls, who underwent aCGH testing in Genetics Clinic at Rhode Island hospital between 1 January/2008 and 31 December 2010. Data collected included sex, age at initial clinical presentation, aCGH result, history of seizures, autism, dysmorphic features, global developmental delay/intellectual disability, hypotonia and failure to thrive. aCGH analysis revealed abnormal results in 34 (17%) and variants of unknown significance in 24 (12%). Patients with three or more clinical diagnoses had a 25.0% incidence of abnormal aCGH findings, while patients with two or fewer clinical diagnoses had a 12.5% incidence of abnormal aCGH findings. Currently, we provide families with a range of 10–30% of a diagnosis with aCGH testing. With increased clinical complexity, patients have an increased probability of having an abnormal aCGH result. With this, we can provide individualized risk estimates for each patient.

  11. Targeted array comparative genomic hybridization--a new diagnostic tool for the detection of large copy number variations in nemaline myopathy-causing genes.

    PubMed

    Kiiski, K; Laari, L; Lehtokari, V-L; Lunkka-Hytönen, M; Angelini, C; Petty, R; Hackman, P; Wallgren-Pettersson, C; Pelin, K

    2013-01-01

    Nemaline myopathy (NM) constitutes a heterogeneous group of congenital myopathies. Mutations in the nebulin gene (NEB) are the main cause of recessively inherited NM. NEB is one of the most largest genes in human. To date, 68 NEB mutations, mainly small deletions or point mutations have been published. The only large mutation characterized is the 2.5 kb deletion of exon 55 in the Ashkenazi Jewish population. To investigate any copy number variations in this enormous gene, we designed a novel custom comparative genomic hybridization microarray, NM-CGH, targeted towards the seven known genes causative for NM. During the validation of the NM-CGH array we identified two novel deletions in two different families. The first is the largest deletion characterized in NEB to date, (∼53 kb) encompassing 24 exons. The second deletion (1 kb) covers two exons. In both families, the copy number change was the second mutation to be characterized and shown to have been inherited from one of the healthy carrier parents. In addition to these novel mutations, copy number variation was identified in four samples in three families in the triplicate region of NEB. We conclude that this method appears promising for the detection of copy number variations in NEB. PMID:23010307

  12. Comparative Correlation Structure of Colon Cancer Locus Specific Methylation: Characterisation of Patient Profiles and Potential Markers across 3 Array-Based Datasets

    PubMed Central

    Barat, Ana; Ruskin, Heather J.

    2015-01-01

    Abnormal DNA-methylation is well known to play an important role in cancer onset and development, and colon cancer is no exception to this rule. Recent years have seen the increased use of large-scale technologies, (such as methylation microarray assays or specific sequencing of methylated DNA), to determine whole genome profiles of CpG island methylation in tissue samples. Comprehensive study of methylation array data from transcriptome high-throughput platforms permits determination of gene methylation markers, important for cancer profiling. Here, three large-scale methylation datasets for colon cancer have been compared to determine locus-specific methylation agreement. These data are from the GEO database, where colon cancer and apparently healthy adjacent tissues are represented by sample sizes 125 and 29 respectively in the first dataset, 24 of each in the second and 118 of each in the third. Several data analysis techniques have been employed, including Clustering, Discriminant Principal Component Analysis, Discriminant Analysis and ROC curves, in order (i) to obtain a better insight on the locus-specific concomitant methylation structures for these diverse data and (ii) to determine a robust potential marker set for indicative screening, drawn from all data taken together. The extent of the agreement between the analysed datasets is reported. Further, potential screening methylation markers, for which methylation profiles are consistent across tissue samples and several datasets, are highlighted and discussed. PMID:26185542

  13. Prenatal diagnosis of a partial trisomy 13q (q14-->qter): phenotype, cytogenetics and molecular characterization by spectral karyotyping and array comparative genomic hybridization.

    PubMed

    Machado, I N; Heinrich, J K; Campanhol, C; Rodrigues-Peres, R M; Oliveira, F M; Barini, R

    2010-03-16

    Partial trisomy 13q is an uncommon chromosomal abnormality with variable phenotypic expression. We report prenatal diagnosis of partial trisomy 13q in a fetus with partial agenesis of the cerebellar vermis, partial agenesis of the corpus callosum, hydrops and polyhydramnios. G-banding karyotyping, spectral karyotyping and array comparative genomic hybridization (aCGH) analysis of fetal blood were performed. Cytogenetic analysis of fetal blood displayed 46,XX,add(4)(q28). The parental karyotypes were normal. A girl was delivered at 34 weeks gestation; she died within 2 h. Autopsy confirmed all the prenatal findings and also showed agenesis of the diaphragm. Spectral karyotyping identified the additional material's origin as chromosome 13. aCGH was carried out and showed amplification of distal regions of the long arm of chromosome 13 from region 13q14 to qter. This is the first report of a fetus with molecular characterization of a partial trisomy 13q (q14-->qter), present as a de novo unbalanced translocation at chromosome 4q. This case demonstrates the usefulness of molecular characterization of malformed fetuses for prenatal diagnosis and counseling.

  14. An Xq22.3 duplication detected by comparative genomic hybridization microarray (Array-CGH) defines a new locus (FGS5) for FG syndrome.

    PubMed

    Jehee, Fernanda Sarquis; Rosenberg, Carla; Krepischi-Santos, Ana Cristina; Kok, Fernando; Knijnenburg, Jeroen; Froyen, Guy; Vianna-Morgante, Angela M; Opitz, John M; Passos-Bueno, Maria Rita

    2005-12-15

    FG syndrome is an X-linked multiple congenital anomalies (MCA) syndrome. It has been mapped to four distinct loci FGS1-4, through linkage analysis (Xq13, Xp22.3, and Xp11.4-p11.3) and based on the breakpoints of an X chromosome inversion (Xq11:Xq28), but so far no gene has been identified. We describe a boy with FG syndrome who has an inherited duplication at band Xq22.3 detected by comparative genomic hybridization microarray (Array-CGH). These duplication maps outside all four loci described so far for FG syndrome, representing therefore a new locus, which we propose to be called FGS5. MID2, a gene closely related to MID1, which is known to be mutated in Opitz G/BBB syndrome, maps within the duplicated segment of our patient. Since FG and Opitz G/BBB syndromes share many manifestations we considered MID2 a candidate gene for FG syndrome. We also discuss the involvement of other potential genes within the duplicated segment and its relationship with clinical symptoms of our patient, as well as the laboratory abnormalities found in his mother, a carrier of the duplication.

  15. Prenatal diagnosis of a partial trisomy 13q (q14-->qter): phenotype, cytogenetics and molecular characterization by spectral karyotyping and array comparative genomic hybridization.

    PubMed

    Machado, I N; Heinrich, J K; Campanhol, C; Rodrigues-Peres, R M; Oliveira, F M; Barini, R

    2010-01-01

    Partial trisomy 13q is an uncommon chromosomal abnormality with variable phenotypic expression. We report prenatal diagnosis of partial trisomy 13q in a fetus with partial agenesis of the cerebellar vermis, partial agenesis of the corpus callosum, hydrops and polyhydramnios. G-banding karyotyping, spectral karyotyping and array comparative genomic hybridization (aCGH) analysis of fetal blood were performed. Cytogenetic analysis of fetal blood displayed 46,XX,add(4)(q28). The parental karyotypes were normal. A girl was delivered at 34 weeks gestation; she died within 2 h. Autopsy confirmed all the prenatal findings and also showed agenesis of the diaphragm. Spectral karyotyping identified the additional material's origin as chromosome 13. aCGH was carried out and showed amplification of distal regions of the long arm of chromosome 13 from region 13q14 to qter. This is the first report of a fetus with molecular characterization of a partial trisomy 13q (q14-->qter), present as a de novo unbalanced translocation at chromosome 4q. This case demonstrates the usefulness of molecular characterization of malformed fetuses for prenatal diagnosis and counseling. PMID:20391329

  16. Kokkos Array

    SciTech Connect

    Edwards Daniel Sunderland, Harold Carter

    2012-09-12

    The Kokkos Array library implements shared-memory array data structures and parallel task dispatch interfaces for data-parallel computational kernels that are performance-portable to multicore-CPU and manycore-accelerator (e.g., GPGPU) devices.

  17. EVALUATION OF FUNGAL GROWTH (PENICILLIUM GLABRUM) ON A CEILING TILE

    EPA Science Inventory

    The paper gives results of a study employing static chambers to study the impact of different equilibrium relative humidities (RHs) and moisture conditions on the ability of a new ceiling tile to support fungal growth. Amplification of the mold, Penicillium glabrum, occurred at R...

  18. Tiled architecture of a CNN-mostly IP system

    NASA Astrophysics Data System (ADS)

    Spaanenburg, Lambert; Malki, Suleyman

    2009-05-01

    Multi-core architectures have been popularized with the advent of the IBM CELL. On a finer grain the problems in scheduling multi-cores have already existed in the tiled architectures, such as the EPIC and Da Vinci. It is not easy to evaluate the performance of a schedule on such architecture as historical data are not available. One solution is to compile algorithms for which an optimal schedule is known by analysis. A typical example is an algorithm that is already defined in terms of many collaborating simple nodes, such as a Cellular Neural Network (CNN). A simple node with a local register stack together with a 'rotating wheel' internal communication mechanism has been proposed. Though the basic CNN allows for a tiled implementation of a tiled algorithm on a tiled structure, a practical CNN system will have to disturb this regularity by the additional need for arithmetical and logical operations. Arithmetic operations are needed for instance to accommodate for low-level image processing, while logical operations are needed to fork and merge different data streams without use of the external memory. It is found that the 'rotating wheel' internal communication mechanism still handles such mechanisms without the need for global control. Overall the CNN system provides for a practical network size as implemented on a FPGA, can be easily used as embedded IP and provides a clear benchmark for a multi-core compiler.

  19. Contributions of systematic tile drainage to watershed scale phosphorus transport

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phosphorus (P) transport from agricultural fields continues be a focal point for addressing harmful algal blooms (HABs) and nuisance algae in freshwater systems throughout the world. In humid, poorly drained regions, attention has turned to P delivery through subsurface tile drainage. Research on th...

  20. Phosphorus modeling in tile drained agricultural systems using APEX

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phosphorus losses through tile drained systems in agricultural landscapes may be causing the persistent eutrophication problems observed in surface water. The purpose of this paper is to evaluate the state of the science in the Agricultural Policy/Environmental eXtender (APEX) model related to surf...

  1. Kinetics of the clay roofing tile convection drying

    SciTech Connect

    Thomas, S. . Faculty of Food Technology); Skansi, D. . Faculty of Chemical Engineering and Technology); Sokele, M. . Telecommunications Center)

    1993-01-01

    Kinetics of the convection drying process of flat tile has been investigated experimentally in an industrial tunnel dryer. Several velocities of wet tile movement through the dryer were tested to obtain maximum allowable drying rate curve. As there are various models to describe the kinetics of convection drying, finding a model that would fairly well approximate the kinetics of the whole drying process was part of the research. Especially the polynomial and exponential models were tested. It was found that exponential model of the type: B(t) = (a[minus]B[sub e])[center dot]EXP([minus]bt[sup 2])+B[sub e], ([minus]dB(t)/dt) = 2bt(B(t)[minus]B[sub e]) significantly correlates the kinetics of the whole tile drying process. Applying the maximum allowable drying rate curve obtained for flat tile in the first period of drying, a grapho-analytic model for the optimal conducting of the process has been developed.

  2. Tiles made from slag sitall based on chemical industry slag

    SciTech Connect

    Batalin, B.S.; Moskalets, N.B.; Klyuchnik, I.A.; Golius, T.E.

    1987-11-01

    The authors establish the feasibility of obtaining ceramic silicate-based facing tiles from fluoroamphibole slag sitall wastes from the hydropyrolytic production of hydrogen fluoride. The recovered ceramic is tested by x-ray diffraction and electron microscopy for its crystallization behavior, structure, workability, corrosion resistance, phase composition, impact strength, and other properties.

  3. Increasing the frost resistance of facade glazed tiles

    SciTech Connect

    Egerev, V.M.; Zotov, S.N.; Romanova, G.P.

    1986-09-01

    The authors investigate the protective properties of a coating of boron oxides and zirconium oxides applied as a glaze to ceramic tiles by conducting a series of tests to determine the frost resistance, the propensity to absorb water, the moisture expansion coefficient, the fracture behavior, and the effect of thermal cycling on the oxides. Results are graphed and tabulated.

  4. Systolic arrays

    SciTech Connect

    Moore, W.R.; McCabe, A.P.H.; Vrquhart, R.B.

    1987-01-01

    Selected Contents of this book are: Efficient Systolic Arrays for the Solution of Toeplitz Systems, The Derivation and Utilization of Bit Level Systolic Array Architectures, an Efficient Systolic Array for Distance Computation Required in a Video-Codec Based Motion-Detection, On Realizations of Least-Squares Estimation and Kalman Filtering by Systolic Arrays, and Comparison of Systolic and SIMD Architectures for Computer Vision Computations.

  5. Nanocylinder arrays

    DOEpatents

    Tuominen, Mark; Schotter, Joerg; Thurn-Albrecht, Thomas; Russell, Thomas P.

    2009-08-11

    Pathways to rapid and reliable fabrication of nanocylinder arrays are provided. Simple methods are described for the production of well-ordered arrays of nanopores, nanowires, and other materials. This is accomplished by orienting copolymer films and removing a component from the film to produce nanopores, that in turn, can be filled with materials to produce the arrays. The resulting arrays can be used to produce nanoscale media, devices, and systems.

  6. Nanocylinder arrays

    DOEpatents

    Tuominen, Mark; Schotter, Joerg; Thurn-Albrecht, Thomas; Russell, Thomas P.

    2007-03-13

    Pathways to rapid and reliable fabrication of nanocylinder arrays are provided. Simple methods are described for the production of well-ordered arrays of nanopores, nanowires, and other materials. This is accomplished by orienting copolymer films and removing a component from the film to produce nanopores, that in turn, can be filled with materials to produce the arrays. The resulting arrays can be used to produce nanoscale media, devices, and systems.

  7. LED-array light source for medical therapy

    NASA Astrophysics Data System (ADS)

    Schlager, Kenneth J.; Ignatius, Ronald W.

    1993-07-01

    Light emitting diode (LED) array light sources currently in development offer an alternative to laser light sources in a wide range of medical applications. Previously developed as light sources for research in photosynthesis in plant growth experimentation, LED arrays have produced an average continuous output of 4 - 6 watts at a wavelength of 660 nm. This output is equivalent to the terrestrially sensed output of the sun at this wavelength at high noon. LED chips are arrayed on an alumina tile substrate that may be formed to provide optical power focused on a specified target area.

  8. Breakthrough of two pesticides into tile drain and shallow groundwater: comparison of tile drain reaction and soil profiles within a field scale irrigation experiment

    NASA Astrophysics Data System (ADS)

    Klaus, Julian; Zehe, Erwin; Elsner, Martin; Palm, Juliane; Schneider, Dorothee; Schröder, Boris; Steinbeiss, Sibylle; West, Stephanie

    2010-05-01

    Preferential flow in macropores is a key process which strongly affects infiltration and may cause rapid transport of pesticides into depths of 80 to 150 cm. At these depths they experience a much slower degradation, may leach into shallow groundwater or enter a tile-drain and are transported into surface water bodies. Therefore, preferential transport might be an environmental problem, if the topsoil is bypassed, which has been originally thought to act as a filter to protect the subsoil and shallow groundwater. To investigate the behaviour of two pesticides with different chemical characteristics and to compare their transport behaviour in soil and into the tile drain an irrigation experiment was performed on a 400 m² field site. The experimental plot is located in the Weiherbach valley, south-west Germany, which basic geology consists of Loess and Keuper layers, the soil at the test site is a gleyic Colluvisol. The distance of the irrigation site to the Weiherbach brook is approximately 12 m, the field is drained with a tile-drain in about 1.2 m depth and shows discharge over the entire year. Three hours before the irrigation started, the farmer applied a pesticide solution consisting of Isoproturon (80 g) and Flufenacet (20 g) (IPU and FLU) according to conventional agricultural practice on the field plot. The irrigation took place in three time blocks (80 min, 60 min, 80 min) with in total 33.6 mm of precipitation. During the first block 1600 g of Bromide were mixed in the irrigation water. The drainage outlet was instrumented with a pressure probe. About 50 water samples ware taken during the experimental day, and several samples more the days after the experiment. They were analysed for the pesticides, bromide and water isotopes. In the two days after the experiment three soil profiles were excavated and soil samples were taken on a 10x10 cm² scheme. One week after the experiment two additional profiles were excavated. The soil was analysed for IPU, FLU

  9. Fixed tile rate codec for bandwidth saving in video processors

    NASA Astrophysics Data System (ADS)

    Lachine, Vladimir; Dinh, Chon-Tam Le; Le, Dinh Kha; Wong, Jeffrey

    2014-02-01

    The paper presents an image compression circuit for bandwidth saving in video display processors. This is intra frame tile based compression algorithm offering visually lossless quality for compression rates between 1.5 and 2.5. RGB and YCbCr (4:4:4, 4:2:2 and 4:2:0) video formats are supported for 8/10 bits video signals. The Band Width Compressor (BWC) consists of Lossless Compressor (LC) and Quantization Compressor (QC) that generate output bit streams for tiles of pixels. Size of output bit stream generated for a tile by the LC may be less or greater than a required size of output memory block. The QC generates bit stream that always fits output memory block of the required size. The output bit stream generated by the LC is transmitted if its size is less than the required size of the output memory block. Otherwise, the output bit stream generated by the QC is transmitted. The LC works on pixel basis. A difference between original and predicted pixel's values for each pixel of a tile is encoded as prefix and suffix. The prefix is encoded by means of variable length code, and suffix is encoded as is. The QC divides a tile of pixels on a set of blocks and quantizes pixels of each block independently of the other blocks. The number of quantization bits for all pixels of a block depends on standard deviation calculated over the block. A difference between pixel's value and average value over the block is quantized and transmitted.

  10. HPLC determination of fumonisin mycotoxins in maize: a comparative study of naphthalene-2,3-dicarboxaldehyde and o-phthaldialdehyde derivatization reagents for fluorescence and diode array detection.

    PubMed

    Ndube, Ncediwe; van der Westhuizen, Liana; Green, Ivan R; Shephard, Gordon S

    2011-08-01

    Fumonisins are mycotoxins produced by various species of Fusarium and occur naturally in contaminated maize and maize-based foods. Ingestion of fumonisins has considerable health implications for humans and animals. Since fumonisins lack a useful chromophore or fluorophore, their determination in maize is routinely achieved via HPLC with fluorescence detection (FLD) after precolumn derivatization. This study optimized naphthalene-2,3-dicarboxaldehyde (NDA) derivatization of fumonisins in naturally contaminated maize following strong anion exchange (SAX) solid phase extraction (SPE) clean-up and utilizing diode array detection (DAD) as a practical alternative simultaneously to FLD. The limit of detection (LOD) for fumonisin B(1) (FB(1)), fumonisin B(2) (FB(2)) and fumonisin B(3) (FB(3)) with FLD was 0.11 ng, 0.50 ng and 0.27 ng, respectively, and with DAD it was 13.8 ng, 12.5 ng and 6.6 ng, respectively injected on column. The coefficient of variation (CV, n = 6) for FB(1), FB(2) and FB(3) in a naturally contaminated samples obtained with FLD was 2.6%, 1.8% and 5.3%, respectively, compared to 6.0%, 3.4% and 9.5%, respectively, obtained with DAD. Subsequently the optimized NDA derivatization was compared to the widely used o-phthaldialdehyde (OPA) derivatization agent as well as alternative sample clean-up with immunoaffinity column (IAC) by analyzing naturally contaminated maize samples (n = 15) ranging in total fumonisin (TFB = FB(1)+FB(2)+FB(3)) levels from 106 to 6000 μg/kg. After immunoaffinity column clean-up of extracted samples, the recoveries of spiked maize samples for NDA-FLD of FB(1), FB(2) and FB(3) were 62%, 94% and 64%, respectively. NDA proved to be an effective derivatization reagent of fumonisin in naturally contaminated maize samples following IAC clean-up, except for DAD at TFB levels below 1000 μg/kg. In contrast NDA derivatization following SAX clean-up produced results comparable to OPA only for levels below 1000 μg/kg. Aside from the

  11. Genome-wide comparison of paired fresh frozen and formalin-fixed paraffin-embedded gliomas by custom BAC and oligonucleotide array comparative genomic hybridization: facilitating analysis of archival gliomas.

    PubMed

    Mohapatra, Gayatry; Engler, David A; Starbuck, Kristen D; Kim, James C; Bernay, Derek C; Scangas, George A; Rousseau, Audrey; Batchelor, Tracy T; Betensky, Rebecca A; Louis, David N

    2011-04-01

    Array comparative genomic hybridization (aCGH) is a powerful tool for detecting DNA copy number alterations (CNA). Because diffuse malignant gliomas are often sampled by small biopsies, formalin-fixed paraffin-embedded (FFPE) blocks are often the only tissue available for genetic analysis; FFPE tissues are also needed to study the intratumoral heterogeneity that characterizes these neoplasms. In this paper, we present a combination of evaluations and technical advances that provide strong support for the ready use of oligonucleotide aCGH on FFPE diffuse gliomas. We first compared aCGH using bacterial artificial chromosome (BAC) arrays in 45 paired frozen and FFPE gliomas, and demonstrate a high concordance rate between FFPE and frozen DNA in an individual clone-level analysis of sensitivity and specificity, assuring that under certain array conditions, frozen and FFPE DNA can perform nearly identically. However, because oligonucleotide arrays offer advantages to BAC arrays in genomic coverage and practical availability, we next developed a method of labeling DNA from FFPE tissue that allows efficient hybridization to oligonucleotide arrays. To demonstrate utility in FFPE tissues, we applied this approach to biphasic anaplastic oligoastrocytomas and demonstrate CNA differences between DNA obtained from the two components. Therefore, BAC and oligonucleotide aCGH can be sensitive and specific tools for detecting CNAs in FFPE DNA, and novel labeling techniques enable the routine use of oligonucleotide arrays for FFPE DNA. In combination, these advances should facilitate genome-wide analysis of rare, small and/or histologically heterogeneous gliomas from FFPE tissues. PMID:21080181

  12. A digital-receiver for the MurchisonWidefield Array

    NASA Astrophysics Data System (ADS)

    Prabu, Thiagaraj; Srivani, K. S.; Roshi, D. Anish; Kamini, P. A.; Madhavi, S.; Emrich, David; Crosse, Brian; Williams, Andrew J.; Waterson, Mark; Deshpande, Avinash A.; Shankar, N. Udaya; Subrahmanyan, Ravi; Briggs, Frank H.; Goeke, Robert F.; Tingay, Steven J.; Johnston-Hollitt, Melanie; R, Gopalakrishna M.; Morgan, Edward H.; Pathikulangara, Joseph; Bunton, John D.; Hampson, Grant; Williams, Christopher; Ord, Stephen M.; Wayth, Randall B.; Kumar, Deepak; Morales, Miguel F.; deSouza, Ludi; Kratzenberg, Eric; Pallot, D.; McWhirter, Russell; Hazelton, Bryna J.; Arcus, Wayne; Barnes, David G.; Bernardi, Gianni; Booler, T.; Bowman, Judd D.; Cappallo, Roger J.; Corey, Brian E.; Greenhill, Lincoln J.; Herne, David; Hewitt, Jacqueline N.; Kaplan, David L.; Kasper, Justin C.; Kincaid, Barton B.; Koenig, Ronald; Lonsdale, Colin J.; Lynch, Mervyn J.; Mitchell, Daniel A.; Oberoi, Divya; Remillard, Ronald A.; Rogers, Alan E.; Salah, Joseph E.; Sault, Robert J.; Stevens, Jamie B.; Tremblay, S.; Webster, Rachel L.; Whitney, Alan R.; Wyithe, Stuart B.

    2015-03-01

    An FPGA-based digital-receiver has been developed for a low-frequency imaging radio interferometer, the Murchison Widefield Array (MWA). The MWA, located at the Murchison Radio-astronomy Observatory (MRO) in Western Australia, consists of 128 dual-polarized aperture-array elements (tiles) operating between 80 and 300 MHz, with a total processed bandwidth of 30.72 MHz for each polarization. Radio-frequency signals from the tiles are amplified and band limited using analog signal conditioning units; sampled and channelized by digital-receivers. The signals from eight tiles are processed by a single digital-receiver, thus requiring 16 digital-receivers for the MWA. The main function of the digital-receivers is to digitize the broad-band signals from each tile, channelize them to form the sky-band, and transport it through optical fibers to a centrally located correlator for further processing. The digital-receiver firmware also implements functions to measure the signal power, perform power equalization across the band, detect interference-like events, and invoke diagnostic modes. The digital-receiver is controlled by high-level programs running on a single-board-computer. This paper presents the digital-receiver design, implementation, current status, and plans for future enhancements.

  13. Life considerations of the shuttle orbiter densified-tile thermal protection system

    NASA Technical Reports Server (NTRS)

    Cooper, P. A.; Sawyer, J. W.

    1983-01-01

    The Shuttle orbiter themal protection system (TPS) incorporates ceramic reusable surface insulation tiles bonded to the orbiter substructure through a strain isolation pad. Densification of the bonding surface of the tiles increases the static strength of the tiles. The densification proces does not, however, necessarily lead to an equivalent increase in fatigue strength. Investigation of the expected lifetime of densified tile TPS under both sinusoidal loading and random loading simulating flight conditions indicates that the strain isolation pads are the weakest components of the TPS under fatigue loading. The felt pads loosen under repetitive loading and, in highly loaded regions, could possibly cause excessive step heights between tiles causing burning of the protective insulation between tiles. A method of improving the operational lifetime of the TPS by using a strain isolation pad with increased stiffness is presented as is the consequence of the effect of increased stiffness on the tile inplane strains and transverse stresses.

  14. Procedure and analysis reports in support of the hollow clay tile wall testing program

    SciTech Connect

    Not Available

    1990-11-01

    The following are included that were generated in the research program on the structural behavior of clay tile walls: test procedure for out-of-plane full scale static testing of a hollow clay tile wall panel, ultimate strength calculations for out-of-plane air bag tests, test procedure for in-plane infilled frame static testing of a hollow clay tile wall panel, in-plane infilled frame static testing of a hollow clay tile wall panel (calculations), test procedure for in-plane masonry static testing of a hollow clay tile wall panel, numerical analysis for in-plane behavior of infilled frames, in-plane analysis of hollow clay tile infilled frames (effect of wall-frame interface and connection rigidity), test procedure for in-plane masonry biaxial compressiont esting of a hollow clay tile wall panel, and outbuilding test program. (DLC)

  15. Procedure and analysis reports in support of the hollow clay tile wall testing program. Revision 1

    SciTech Connect

    Not Available

    1990-11-01

    The following are included that were generated in the research program on the structural behavior of clay tile walls: test procedure for out-of-plane full scale static testing of a hollow clay tile wall panel, ultimate strength calculations for out-of-plane air bag tests, test procedure for in-plane infilled frame static testing of a hollow clay tile wall panel, in-plane infilled frame static testing of a hollow clay tile wall panel (calculations), test procedure for in-plane masonry static testing of a hollow clay tile wall panel, numerical analysis for in-plane behavior of infilled frames, in-plane analysis of hollow clay tile infilled frames (effect of wall-frame interface and connection rigidity), test procedure for in-plane masonry biaxial compressiont esting of a hollow clay tile wall panel, and outbuilding test program. (DLC)

  16. Water and Nutrient Balances in a Large Tile-Drained Agricultural Catchment: A Distributed Modeling Study

    SciTech Connect

    Li, Hongyi; Sivapalan, Murugesu; Tian, Fuqiang; Liu, Dengfeng

    2010-11-16

    This paper presents the development and implementation of a distributed model of coupled water nutrient processes, based on the representative elementary watershed (REW) approach, to the Upper Sangamon River Basin, a large, tile-drained agricultural basin located in central Illinois, mid-west of USA. Comparison of model predictions with the observed hydrological and biogeochemical data, as well as regional estimates from literature studies, shows that the model is capable of capturing the dynamics of water, sediment and nutrient cycles reasonably well. The model is then used as a tool to gain insights into the physical and chemical processes underlying the inter- and intra-annual variability of water and nutrient balances. Model predictions show that about 80% of annual runoff is contributed by tile drainage, while the remainder comes from surface runoff (mainly saturation excess flow) and subsurface runoff. It is also found that, at the annual scale nitrogen storage in the soil is depleted during wet years, and is supplemented during dry years. This carryover of nitrogen storage from dry year to wet year is mainly caused by the lateral loading of nitrate. Phosphorus storage, on the other hand, is not affected much by wet/dry conditions simply because the leaching of it is very minor compared to the other mechanisms taking phosphorous out of the basin, such as crop harvest. The analysis then turned to the movement of nitrate with runoff. Model results suggested that nitrate loading from hillslope into the channel is preferentially carried by tile drainage. Once in the stream it is then subject to in-stream denitrification, the significant spatio-temporal variability of which can be related to the variation of the hydrologic and hydraulic conditions across the river network.

  17. Denitrification in the shallow ground water of a tile-drained, agricultural watershed

    USGS Publications Warehouse

    Mehnert, E.; Hwang, H.-H.; Johnson, T.M.; Sanford, R.A.; Beaumont, W.C.; Holm, T.R.

    2007-01-01

    Nonpoint-source pollution of surface water by N is considered a major cause of hypoxia. Because Corn Belt watersheds have been identified as major sources of N in the Mississippi River basin, the fate and transport of N from midwestern agricultural watersheds have received considerable interest. The fate and transport of N in the shallow ground water of these watersheds still needs additional research. Our purpose was to estimate denitrification in the shallow ground water of a tile-drained, Corn Belt watershed with fine-grained soils. Over a 3-yr period, N was monitored in the surface and ground water of an agricultural watershed in central Illinois. A significant amount of N was transported past the tile drains and into shallow ground water. The ground water nitrate was isotopically heavier than tile drain nitrate, which can be explained by denitrification in the subsurface. Denitrifying bacteria were found at depths to 10 m throughout the watershed. Laboratory and push-pull tests showed that a significant fraction of nitrate could be denitrified rapidly. We estimated that the N denitrified in shallow ground water was equivalent to 0.3 to 6.4% of the applied N or 9 to 27% of N exported via surface water. These estimates varied by water year and peaked in a year of normal precipitation after 2 yr of below average precipitation. Three years of monitoring data indicate that shallow ground water in watersheds with fine-grained soils may be a significant N sink compared with N exported via surface water. ?? ASA, CSSA, SSSA.

  18. Rye cover crop and gamagrass strip effects on NO3 concentration and load in tile drainage.

    PubMed

    Kaspar, T C; Jaynes, D B; Parkin, T B; Moorman, T B

    2007-01-01

    A significant portion of the NO3 from agricultural fields that contaminates surface waters in the Midwest Corn Belt is transported to streams or rivers by subsurface drainage systems or "tiles." Previous research has shown that N fertilizer management alone is not sufficient for reducing NO3 concentrations in subsurface drainage to acceptable levels; therefore, additional approaches need to be devised. We compared two cropping system modifications for NO3 concentration and load in subsurface drainage water for a no-till corn (Zea mays L.)-soybean (Glycine max [L.] Merr.) management system. In one treatment, eastern gamagrass (Tripsacum dactyloides L.) was grown in permanent 3.05-m-wide strips above the tiles. For the second treatment, a rye (Secale cereale L.) winter cover crop was seeded over the entire plot area each year near harvest and chemically killed before planting the following spring. Twelve 30.5x42.7-m subsurface-drained field plots were established in 1999 with an automated system for measuring tile flow and collecting flow-weighted samples. Both treatments and a control were initiated in 2000 and replicated four times. Full establishment of both treatments did not occur until fall 2001 because of dry conditions. Treatment comparisons were conducted from 2002 through 2005. The rye cover crop treatment significantly reduced subsurface drainage water flow-weighted NO3 concentrations and NO3 loads in all 4 yr. The rye cover crop treatment did not significantly reduce cumulative annual drainage. Averaged over 4 yr, the rye cover crop reduced flow-weighted NO3 concentrations by 59% and loads by 61%. The gamagrass strips did not significantly reduce cumulative drainage, the average annual flow-weighted NO3 concentrations, or cumulative NO3 loads averaged over the 4 yr. Rye winter cover crops grown after corn and soybean have the potential to reduce the NO3 concentrations and loads delivered to surface waters by subsurface drainage systems.

  19. Denitrification in the shallow ground water of a tile-drained, agricultural watershed.

    PubMed

    Mehnert, Edward; Hwang, Hue-Hwa; Johnson, Thomas M; Sanford, Robert A; Beaumont, Will C; Holm, Thomas R

    2007-01-01

    Nonpoint-source pollution of surface water by N is considered a major cause of hypoxia. Because Corn Belt watersheds have been identified as major sources of N in the Mississippi River basin, the fate and transport of N from midwestern agricultural watersheds have received considerable interest. The fate and transport of N in the shallow ground water of these watersheds still needs additional research. Our purpose was to estimate denitrification in the shallow ground water of a tile-drained, Corn Belt watershed with fine-grained soils. Over a 3-yr period, N was monitored in the surface and ground water of an agricultural watershed in central Illinois. A significant amount of N was transported past the tile drains and into shallow ground water. The ground water nitrate was isotopically heavier than tile drain nitrate, which can be explained by denitrification in the subsurface. Denitrifying bacteria were found at depths to 10 m throughout the watershed. Laboratory and push-pull tests showed that a significant fraction of nitrate could be denitrified rapidly. We estimated that the N denitrified in shallow ground water was equivalent to 0.3 to 6.4% of the applied N or 9 to 27% of N exported via surface water. These estimates varied by water year and peaked in a year of normal precipitation after 2 yr of below average precipitation. Three years of monitoring data indicate that shallow ground water in watersheds with fine-grained soils may be a significant N sink compared with N exported via surface water.

  20. Optimal Non-Invasive Fault Classification Model for Packaged Ceramic Tile Quality Monitoring Using MMW Imaging

    NASA Astrophysics Data System (ADS)

    Agarwal, Smriti; Singh, Dharmendra

    2016-04-01

    Millimeter wave (MMW) frequency has emerged as an efficient tool for different stand-off imaging applications. In this paper, we have dealt with a novel MMW imaging application, i.e., non-invasive packaged goods quality estimation for industrial quality monitoring applications. An active MMW imaging radar operating at 60 GHz has been ingeniously designed for concealed fault estimation. Ceramic tiles covered with commonly used packaging cardboard were used as concealed targets for undercover fault classification. A comparison of computer vision-based state-of-the-art feature extraction techniques, viz, discrete Fourier transform (DFT), wavelet transform (WT), principal component analysis (PCA), gray level co-occurrence texture (GLCM), and histogram of oriented gradient (HOG) has been done with respect to their efficient and differentiable feature vector generation capability for undercover target fault classification. An extensive number of experiments were performed with different ceramic tile fault configurations, viz., vertical crack, horizontal crack, random crack, diagonal crack along with the non-faulty tiles. Further, an independent algorithm validation was done demonstrating classification accuracy: 80, 86.67, 73.33, and 93.33 % for DFT, WT, PCA, GLCM, and HOG feature-based artificial neural network (ANN) classifier models, respectively. Classification results show good capability for HOG feature extraction technique towards non-destructive quality inspection with appreciably low false alarm as compared to other techniques. Thereby, a robust and optimal image feature-based neural network classification model has been proposed for non-invasive, automatic fault monitoring for a financially and commercially competent industrial growth.

  1. Investigation by laser induced breakdown spectroscopy, X-ray fluorescence and X-ray powder diffraction of the chemical composition of white clay ceramic tiles from Veliki Preslav

    NASA Astrophysics Data System (ADS)

    Blagoev, K.; Grozeva, M.; Malcheva, G.; Neykova, S.

    2013-01-01

    The paper presents the results of the application of laser induced breakdown spectroscopy, X-ray fluorescence spectrometry, and X-ray powder diffraction in assessing the chemical and phase composition of white clay decorative ceramic tiles from the medieval archaeological site of Veliki Preslav, a Bulgarian capital in the period 893-972 AC, well-known for its original ceramic production. Numerous white clay ceramic tiles with highly varied decoration, produced for wall decoration of city's churches and palaces, were found during the archaeological excavations in the old capital. The examination of fourteen ceramic tiles discovered in one of the city's monasteries is aimed at characterization of the chemical profile of the white-clay decorative ceramics produced in Veliki Preslav. Combining different methods and comparing the obtained results provides complementary information regarding the white-clay ceramic production in Veliki Preslav and complete chemical characterization of the examined artefacts.

  2. Dual-permeability modeling of preferential bromide leaching from a tile-drained glacial till agricultural field

    NASA Astrophysics Data System (ADS)

    Gerke, Horst H.; Maximilian Köhne, J.

    2004-04-01

    A tile-drained agricultural field can be regarded as a 'field-scale' lysimeter that may be used to study soil water and chemical transport under relatively natural conditions. Tile discharge and effluent bromide concentrations measured in a previous field tracer experiment for a structured clayey loam at Bokhorst, Northern Germany, indicated strong preferential flow. Simulation using single domain HYDRUS numerical flow and transport model could nevertheless explain water outflow, however, completely failed to describe tile-drain leaching patterns of the conservative tracer. The objective of this paper was to analyze whether the nonequilibrium-type dual-permeability model concept could better capture soil structure related principle mechanisms of preferential leaching in the unsaturated soil at that study site. The dual-permeability model (DUAL) describes for soil matrix and fracture pore systems Darcian flow with coupled Richards' equations and convective-dispersive (CD) solute transport with coupled CD equations. The hydraulic parameters of the dual-permeability model were obtained from standard soil hydraulic measurements by adopting a bimodal fitting procedure, whereas transport parameters were inferred from soil column tracer experiments and geometrical transfer term parameters were derived using qualitative soil structure descriptions. The hydraulic conductivity Ka in the inter-domain water transfer term and the effective diffusion coefficient Da in the solute mass transfer term were calibrated by comparing simulated with measured tile flow and effluent concentrations. The DUAL approach described water flow similarly well as the single-domain model. Bromide concentrations in the tile effluent could be approximated with DUAL when decreasing the Ka and Da values by three orders of magnitude compared with the values of the soil matrix domain. The dual-permeability approach seems to reflect nonequilibrium transport mechanisms at this structured soil since it not

  3. An Analysis of the Selected Materials Used in Step Measurements During Pre-Fits of Thermal Protection System Tiles and the Accuracy of Measurements Made Using These Selected Materials

    NASA Technical Reports Server (NTRS)

    Kranz, David William

    2010-01-01

    The goal of this research project was be to compare and contrast the selected materials used in step measurements during pre-fits of thermal protection system tiles and to compare and contrast the accuracy of measurements made using these selected materials. The reasoning for conducting this test was to obtain a clearer understanding to which of these materials may yield the highest accuracy rate of exacting measurements in comparison to the completed tile bond. These results in turn will be presented to United Space Alliance and Boeing North America for their own analysis and determination. Aerospace structures operate under extreme thermal environments. Hot external aerothermal environments in high Mach number flights lead to high structural temperatures. The differences between tile heights from one to another are very critical during these high Mach reentries. The Space Shuttle Thermal Protection System is a very delicate and highly calculated system. The thermal tiles on the ship are measured to within an accuracy of .001 of an inch. The accuracy of these tile measurements is critical to a successful reentry of an orbiter. This is why it is necessary to find the most accurate method for measuring the height of each tile in comparison to each of the other tiles. The test results indicated that there were indeed differences in the selected materials used in step measurements during prefits of Thermal Protection System Tiles and that Bees' Wax yielded a higher rate of accuracy when compared to the baseline test. In addition, testing for experience level in accuracy yielded no evidence of difference to be found. Lastly the use of the Trammel tool over the Shim Pack yielded variable difference for those tests.

  4. The sROD module for the ATLAS Tile Calorimeter Phase-II Upgrade Demonstrator

    NASA Astrophysics Data System (ADS)

    Carrió, F.; Castillo, V.; Ferrer, A.; Fiorini, L.; Hernández, Y.; Higón, E.; Mellado, B.; March, L.; Moreno, P.; Reed, R.; Solans, C.; Valero, A.; Valls, J. A.

    2014-02-01

    TileCal is the central hadronic calorimeter of the ATLAS experiment at the Large Hadron Collider (LHC) at CERN. The main upgrade of the LHC to increase the instantaneous luminosity is scheduled for 2022. The High Luminosity LHC, also called upgrade Phase-II, will imply a complete redesign of the read-out electronics in TileCal. In the new read-out architecture, the front-end electronics aims to transmit full digitized information to the back-end system in the counting rooms. Thus, the back-end system will also provide digital calibrated information with enhanced precision and granularity to the first level trigger to improve the trigger efficiencies. The demonstrator project is envisaged to qualify this new proposed architecture. A reduced part of the detector, 1/256 of the total, will be equipped with the new electronics during 2014 to evaluate the proposed architecture in real conditions. The upgraded Read-Out Driver (sROD) will be the core element of the back-end electronics in Phase-II. The sROD module is designed on a double mid-size AMC format and will operate under an AdvancedTCA framework. The module includes two Xilinx Series 7 Field Programmable Gate Arrays (FPGAs) for data receiving and processing, as well as the implementation of embedded systems. Related to optical connectors, the sROD uses 4 QSFPs to receive and transmit data from the front-end electronics and 1 Avago MiniPOD to send preprocessed data to the first level trigger system. An SFP module maintains the compatibility with the existing hardware. A complete description of the sROD module for the demonstrator including the main functionalities, circuit design and the control software and firmware will be presented.

  5. Rapid hologram generation utilizing layer-based approach and graphic rendering for realistic three-dimensional image reconstruction by angular tiling

    NASA Astrophysics Data System (ADS)

    Chen, Jhen-Si; Chu, Daping; Smithwick, Quinn

    2014-03-01

    An approach of rapid hologram generation for the realistic three-dimensional (3-D) image reconstruction based on the angular tiling concept is proposed, using a new graphic rendering approach integrated with a previously developed layer-based method for hologram calculation. A 3-D object is simplified as layered cross-sectional images perpendicular to a chosen viewing direction, and our graphics rendering approach allows the incorporation of clear depth cues, occlusion, and shading in the generated holograms for angular tiling. The combination of these techniques together with parallel computing reduces the computation time of a single-view hologram for a 3-D image of extended graphics array resolution to 176 ms using a single consumer graphics processing unit card.

  6. Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

    PubMed Central

    2011-01-01

    Background Single nucleotide polymorphisms (SNPs) are the most abundant source of genetic variation among individuals of a species. New genotyping technologies allow examining hundreds to thousands of SNPs in a single reaction for a wide range of applications such as genetic diversity analysis, linkage mapping, fine QTL mapping, association studies, marker-assisted or genome-wide selection. In this paper, we evaluated the potential of highly-multiplexed SNP genotyping for genetic mapping in maritime pine (Pinus pinaster Ait.), the main conifer used for commercial plantation in southwestern Europe. Results We designed a custom GoldenGate assay for 1,536 SNPs detected through the resequencing of gene fragments (707 in vitro SNPs/Indels) and from Sanger-derived Expressed Sequenced Tags assembled into a unigene set (829 in silico SNPs/Indels). Offspring from three-generation outbred (G2) and inbred (F2) pedigrees were genotyped. The success rate of the assay was 63.6% and 74.8% for in silico and in vitro SNPs, respectively. A genotyping error rate of 0.4% was further estimated from segregating data of SNPs belonging to the same gene. Overall, 394 SNPs were available for mapping. A total of 287 SNPs were integrated with previously mapped markers in the G2 parental maps, while 179 SNPs were localized on the map generated from the analysis of the F2 progeny. Based on 98 markers segregating in both pedigrees, we were able to generate a consensus map comprising 357 SNPs from 292 different loci. Finally, the analysis of sequence homology between mapped markers and their orthologs in a Pinus taeda linkage map, made it possible to align the 12 linkage groups of both species. Conclusions Our results show that the GoldenGate assay can be used successfully for high-throughput SNP genotyping in maritime pine, a conifer species that has a genome seven times the size of the human genome. This SNP-array will be extended thanks to recent sequencing effort using new generation

  7. Study of the effect of nano surface morphology on the stain-resistant property of ceramic tiles

    NASA Astrophysics Data System (ADS)

    Pan, S. P.; Hung, J. K.; Liu, Y. T.

    2014-03-01

    In this study, six types of commercially available ceramic tiles, including nano-structured ceramic tiles and regular ceramic tiles, were selected to investigate the effect of surface morphology on their stain-resistant property. The stain-resistant efficiencies of various ceramic tiles with nano-size surface were measured in order to determine the appropriate method for testing ceramic tiles with nano-structure surface.

  8. Multibeam Phased Array Antennas

    NASA Technical Reports Server (NTRS)

    Popovic, Zoya; Romisch, Stefania; Rondineau, Sebastien

    2004-01-01

    In this study, a new architecture for Ka-band multi-beam arrays was developed and demonstrated experimentally. The goal of the investigation was to demonstrate a new architecture that has the potential of reducing the cost as compared to standard expensive phased array technology. The goals of this specific part of the project, as stated in the yearly statement of work in the original proposal are: 1. Investigate bounds on performance of multi-beam lens arrays in terms of beamwidths, volume (size), isolation between beams, number of simultaneous beams, etc. 2. Design a small-scale array to demonstrate the principle. The array will be designed for operation around 3OGHz (Ka-band), with two 10-degree beamwidth beams. 3. Investigate most appropriate way to accomplish fine-tuning of the beam pointing within 5 degrees around the main beam pointing angle.

  9. A male newborn with VACTERL association and Fanconi anemia with a FANCB deletion detected by array comparative genomic hybridization (aCGH).

    PubMed

    Umaña, Luis A; Magoulas, Pilar; Bi, Weimin; Bacino, Carlos A

    2011-12-01

    We report on a male newborn with multiple congenital abnormalities consistent with the diagnosis of VACTERL association (vertebral, anal, cardiac, tracheo-esophageal fistula, renal, and limb anomalies), who had Fanconi anemia (complementation group B) recognized by the detection of a deletion in chromosome Xp22.2 using an oligonucleotide array. The diagnosis of Fanconi anemia was confirmed by increased chromosomal breakage abnormalities observed in cultured cells that were treated with cross-linking agents. This is the first report in the literature of Fanconi anemia complementation group B detected by oligonucleotide array testing postnatally.

  10. Large-scale testing of structural clay tile infilled frames

    SciTech Connect

    Flanagan, R.D.; Bennett, R.M.

    1993-03-18

    A summary of large-scale cyclic static tests of structural clay tile infilled frames is given. In-plane racking tests examined the effects of varying frame stiffness, varying infill size, infill offset from frame centerline, and single and double wythe infill construction. Out-of-plane tests examined infilled frame response to inertial loadings and inter-story drift loadings. Sequential in-plane and out-of-plane loadings were performed to determine the effects of orthogonal damage and degradation on both strength and stiffness. A combined out-of-plane inertial and in-plane racking test was conducted to investigate the interaction of multi-directional loading. To determine constitutive properties of the infills, prism compression, mortar compression and various unit tile tests were performed.

  11. Inspection of magnetic tile internal cracks based on impact acoustics

    NASA Astrophysics Data System (ADS)

    Xie, Luofeng; Huang, Qinyuan; Zhao, Yue; Yin, Guofu

    2015-04-01

    An automatic system is developed for internal cracks detection in magnetic tiles based on the impact acoustics, using wavelet packet transform (WPT), principal component analysis (PCA) and hidden Markov model (HMM). In this system, the detecting device is considered as core part to collect and analyse the impact sounds. The original impact sounds are first decomposed up to six levels based on WPT to extract the features. PCA is then performed for dimension reduction and clustering analysis. By adopting the features extracted based on WPT and optimised by PCA as inputs, an HHM classifier is developed for automatic inspection. The results of classification show that the accuracy rate is 100%, demonstrating that the system has significant potential in detecting magnetic tile internal cracks.

  12. The geometry of the 37-tile microwave antenna support structure

    NASA Technical Reports Server (NTRS)

    Finley, L. A.

    1980-01-01

    The geometry of the support structure for a proposed parabolic shaped microwave antenna is examined. The surface of the antenna is comprised of 37 hexagonal shaped tiles, each connected to a truss module. The units are joined together to form a rigidized, faceted, concave parabolic surface. The geometry specifications are described through an explanation of the structural components which make up the antenna, a description of the coordinate system devised to identify the structure, and a presentation of the nondimensional results.

  13. Natural radioactivity content of granite tiles used in Greece.

    PubMed

    Papaefthymiou, H

    2008-01-01

    Measurements of (226)Ra, (232)Th and (40)K activity concentrations in commercial granite tiles imported in Greece were performed using gamma-ray spectrometry. The activity concentration of (226)Ra, (232)Th and (40)K ranged from 1 to 434, 2 to 239 and 71 to 1576 Bq kg(-1), respectively. The calculated activity concentration index (I) values for all granite samples examined were found to be within the EC limit values for superficial and other materials with restricted use.

  14. Response and Uniformity Studies of Directly Coupled Tiles

    SciTech Connect

    Zutshi, Vishnu

    2010-04-02

    A finely-segmented scintillator-based calorimeter which capitalizes on the marriage of proven detection techniques with novel solid-state photo-detector devices such as Multi-pixel Photon Counters (MPPCs) is an interesting calorimetric system from the point of view of future detector design. A calorimeter system consisting of millions of channels will require a high degree of integration. The first steps towards this integration have already been facilitated by the small size and magnetic field immunity of the MPPCs. The photo-conversion occurs right at the tile, thus obviating the need for routing of long clear fibers. Similar considerations apply to the presence of wave-length shifting (WLS) fibers inside the tiles which couple it to the photo-detectors. Significant simplification in construction and assembly ensue if the MPPCs can be coupled directly to the scintillator tiles. Equally importantly, the total absence of fibers would offer greater flexibility in the choice of the transverse segmentation while enhancing the electro-mechanical integrability of the design. The NIU high-energy physics group has been studying the fiberless or direct-coupling option for some time now. Encouraging results on response and response uniformity have been obtained using radioactive sources. This MOU seeks to set up a framework to extend these tests using beams at the MTBF. The results will be relevant to high granularity scintillator/crystal electromagnetic and hadronic calorimetry. The tests involve a set of small directly-coupled tile counters fabricated at NIU which will be placed in the beam to study their response and response uniformity as a function of the incident position of the particles passing through them.

  15. Experimental testing of hollow clay tile infilled frames

    SciTech Connect

    Flanagan, R.D. ); Bennett, R.M.; Barclay, G.A. . Dept. of Civil Engineering)

    1992-02-27

    A common building construction of the Oak Ridge Y-12 Plant is structural steel framing with infilled unreinforced hollow clay tile walls. A comprehensive program is underway to evaluate the resistance of this construction to natural phenomena loadings, particularly earthquake. This paper presents the results of the first series of large-scale infilled frame tests which were statically loaded in-plane to failure. Varying frame to infill stiffness was examined within the range of actual building construction.

  16. A hollow clay tile wall seismic performance program overview

    SciTech Connect

    Beavers, J.E.; Jones, W.D.; Stoddart, W.C.T.

    1992-02-25

    An overview of a multiyear hollow clay tile wall (HCTW) program being conducted by Martin Marietta Energy Systems, Inc., at the Oak Ridge Y-12 Plant, for the US Department of Energy is presented. The purpose of the HCTW program is to determine the load capacity of unreinforced infilled HCTW buildings when subjected to earthquakes. Progress to date tends to indicate that extensive retrofit of such structures may not be warranted in low-to-moderate seismic zones.

  17. An integrated approach for assessing the bioreceptivity of glazed tiles to phototrophic microorganisms.

    PubMed

    Coutinho, M L; Miller, A Z; Rogerio-Candelera, M A; Mirão, J; Cerqueira Alves, L; Veiga, J P; Águas, H; Pereira, S; Lyubchyk, A; Macedo, M F

    2016-01-01

    A laboratory-based methodology was designed to assess the bioreceptivity of glazed tiles. The experimental set-up consisted of multiple steps: manufacturing of pristine and artificially aged glazed tiles, enrichment of phototrophic microorganisms, inoculation of phototrophs on glazed tiles, incubation under optimal conditions and quantification of biomass. In addition, tile intrinsic properties were assessed to determine which material properties contributed to tile bioreceptivity. Biofilm growth and biomass were appraised by digital image analysis, colorimetry and chlorophyll a analysis. SEM, micro-Raman and micro-particle induced X-ray emission analyses were carried out to investigate the biodeteriorating potential of phototrophic microorganisms on the glazed tiles. This practical and multidisciplinary approach showed that the accelerated colonization conditions allowed different types of tile bioreceptivity to be distinguished and to be related to precise characteristics of the material. Aged tiles showed higher bioreceptivity than pristine tiles due to their higher capillarity and permeability. Moreover, biophysical deterioration caused by chasmoendolithic growth was observed on colonized tile surfaces. PMID:26900634

  18. The effect of manufacturing variables on radiation doses from porcelain tiles.

    PubMed

    Selby, J H; Strydom, R

    2008-06-01

    Previous studies have focused on the radiological properties of glazed ceramic tiles. This study was conducted to describe the radiological properties of porcelain tiles and how they were affected by variations in the manufacturing parameters. The data showed that the majority of the uranium in the tiles was attributable to the addition of zircon while less than half of the thorium in the tile was attributable to the added zircon, and the remainder came from other minerals in the formulation. The effects of firing temperatures and compressive strengths of the tiles are presented and show that higher firing temperatures increase radon emanation, while higher compressive strengths reduce radon emanation. The study also described how the addition of zircon to the tile formulation affected the radiological exposures that could be received by a member of the public from the use of such porcelain tiles. A dose assessment was conducted based on 23 different types of tile formulation. Screening procedures for building materials have been described in European Commission documents, and these limit the addition of zircon in a porcelain tile to approximately 9% by mass. The dose assessment reported in this study showed that 20% zircon could be added to a porcelain tile without exceeding the prescribed dose limits.

  19. An integrated approach for assessing the bioreceptivity of glazed tiles to phototrophic microorganisms.

    PubMed

    Coutinho, M L; Miller, A Z; Rogerio-Candelera, M A; Mirão, J; Cerqueira Alves, L; Veiga, J P; Águas, H; Pereira, S; Lyubchyk, A; Macedo, M F

    2016-01-01

    A laboratory-based methodology was designed to assess the bioreceptivity of glazed tiles. The experimental set-up consisted of multiple steps: manufacturing of pristine and artificially aged glazed tiles, enrichment of phototrophic microorganisms, inoculation of phototrophs on glazed tiles, incubation under optimal conditions and quantification of biomass. In addition, tile intrinsic properties were assessed to determine which material properties contributed to tile bioreceptivity. Biofilm growth and biomass were appraised by digital image analysis, colorimetry and chlorophyll a analysis. SEM, micro-Raman and micro-particle induced X-ray emission analyses were carried out to investigate the biodeteriorating potential of phototrophic microorganisms on the glazed tiles. This practical and multidisciplinary approach showed that the accelerated colonization conditions allowed different types of tile bioreceptivity to be distinguished and to be related to precise characteristics of the material. Aged tiles showed higher bioreceptivity than pristine tiles due to their higher capillarity and permeability. Moreover, biophysical deterioration caused by chasmoendolithic growth was observed on colonized tile surfaces.

  20. Signal reconstruction performance with the ATLAS Hadronic Tile Calorimeter

    NASA Astrophysics Data System (ADS)

    Klimek, Pawel; ATLAS Tile Calorimeter Group

    2012-12-01

    The Tile Calorimeter (TileCal) is the central section of the hadronic calorimeter of ATLAS. It is a key detector for the reconstruction of hadrons, jets, taus and missing transverse energy. TileCal is a sampling calorimeter with steel as absorber and scintillators as active medium. The scintillators are read-out by wavelength shifting fibers coupled to photomultiplier tubes (PMTs). The analogue signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The read out system is designed to reconstruct the data in real time fulfilling the tight constraints imposed by the ATLAS first level trigger rate (100 kHz). The signal amplitude for each channel and their phase are measured using Optimal Filtering techniques both at online and offline level. We present the performance of these techniques on the data collected in the proton-proton collisions at center-of-mass energy equal to 7 TeV. We will address the performance for the measurement on high pile-up environment and on various physics and calibration signals.

  1. Orion EFT-1 Catalytic Tile Experiment Overview and Flight Measurements

    NASA Technical Reports Server (NTRS)

    Salazar, Giovanni; Amar, Adam; Hyatt, Andrew; Rezin, Marc D.

    2016-01-01

    This paper describes the design and results of a surface catalysis flight experiment flown on the Orion Multipurpose Crew Vehicle during Exploration Flight Test 1 (EFT1). Similar to previous Space Shuttle catalytic tile experiments, the present test consisted of a highly catalytic coating applied to an instrumented TPS tile. However, the present catalytic tile experiment contained significantly more instrumentation in order to better resolve the heating overshoot caused by the change in surface catalytic efficiency at the interface between two distinct materials. In addition to collecting data with unprecedented spatial resolution of the "overshoot" phenomenon, the experiment was also designed to prove if such a catalytic overshoot would be seen in turbulent flow in high enthalpy regimes. A detailed discussion of the results obtained during EFT1 is presented, as well as the challenges associated with data interpretation of this experiment. Results of material testing carried out in support of this flight experiment are also shown. Finally, an inverse heat conduction technique is employed to reconstruct the flight environments at locations upstream and along the catalytic coating. The data and analysis presented in this work will greatly contribute to our understanding of the catalytic "overshoot" phenomenon, and have a significant impact on the design of future spacecraft.

  2. Functionalization of ceramic tile surface by sol-gel technique.

    PubMed

    Bondioli, F; Taurino, R; Ferrari, A M

    2009-06-15

    The aim of this investigation was the surface functionalization of industrial ceramic tiles by sol-gel technique to improve at the same time the cleanability of unglazed surfaces. This objective was pursued through the design and preparation of nanostructured coating that was deposited on polished unglazed tiles by air-brushing. In particular TiO(2)-SiO(2) binary film with 1, 2 or 5wt% of titania were prepared by using tetraethoxysilane and titania nanoparticles as precursors. The obtained films were characterized by scratch tests to verify the adhesion of the coatings to the polished tiles. To mainly evaluate the effect of the thermal treatment (temperature range 100-600 degrees C) on the photocatalicity of the coatings, the films were studied under UV exposure by contact angle measurements and cleanability test. Particular attention has been paid to preserve the aesthetical aspect of the final product and the obtained hue variation was evaluated by means of UV-visible spectroscopy and colorimetric analysis.

  3. Leaching of the Neonicotinoids Thiamethoxam and Imidacloprid from Sugar Beet Seed Dressings to Subsurface Tile Drains.

    PubMed

    Wettstein, Felix E; Kasteel, Roy; Garcia Delgado, Maria F; Hanke, Irene; Huntscha, Sebastian; Balmer, Marianne E; Poiger, Thomas; Bucheli, Thomas D

    2016-08-24

    Pesticide transport from seed dressings toward subsurface tile drains is still poorly understood. We monitored the neonicotinoid insecticides imidacloprid and thiamethoxam from sugar beet seed dressings in flow-proportional drainage water samples, together with spray applications of bromide and the herbicide S-metolachlor in spring and the fungicides epoxiconazole and kresoxim-methyl in summer. Event-driven, high first concentration maxima up to 2830 and 1290 ng/L for thiamethoxam and imidacloprid, respectively, were followed by an extended period of tailing and suggested preferential flow. Nevertheless, mass recoveries declined in agreement with the degradation and sorption properties collated in the groundwater ubiquity score, following the order bromide (4.9%), thiamethoxam (1.2%), imidacloprid (0.48%), kresoxim-methyl acid (0.17%), S-metolachlor (0.032%), epoxiconazole (0.013%), and kresoxim-methyl (0.003%), and indicated increased leaching from seed dressings compared to spray applications. Measured concentrations and mass recoveries indicate that subsurface tile drains contribute to surface water contamination with neonicotinoids from seed dressings. PMID:27529118

  4. JuxtaView - A tool for interactive visualization of large imagery on scalable tiled displays

    USGS Publications Warehouse

    Krishnaprasad, N.K.; Vishwanath, V.; Venkataraman, S.; Rao, A.G.; Renambot, L.; Leigh, J.; Johnson, A.E.; Davis, B.

    2004-01-01

    JuxtaView is a cluster-based application for viewing ultra-high-resolution images on scalable tiled displays. We present in JuxtaView, a new parallel computing and distributed memory approach for out-of-core montage visualization, using LambdaRAM, a software-based network-level cache system. The ultimate goal of JuxtaView is to enable a user to interactively roam through potentially terabytes of distributed, spatially referenced image data such as those from electron microscopes, satellites and aerial photographs. In working towards this goal, we describe our first prototype implemented over a local area network, where the image is distributed using LambdaRAM, on the memory of all nodes of a PC cluster driving a tiled display wall. Aggressive pre-fetching schemes employed by LambdaRAM help to reduce latency involved in remote memory access. We compare LambdaRAM with a more traditional memory-mapped file approach for out-of-core visualization. ?? 2004 IEEE.

  5. Leaching of the Neonicotinoids Thiamethoxam and Imidacloprid from Sugar Beet Seed Dressings to Subsurface Tile Drains.

    PubMed

    Wettstein, Felix E; Kasteel, Roy; Garcia Delgado, Maria F; Hanke, Irene; Huntscha, Sebastian; Balmer, Marianne E; Poiger, Thomas; Bucheli, Thomas D

    2016-08-24

    Pesticide transport from seed dressings toward subsurface tile drains is still poorly understood. We monitored the neonicotinoid insecticides imidacloprid and thiamethoxam from sugar beet seed dressings in flow-proportional drainage water samples, together with spray applications of bromide and the herbicide S-metolachlor in spring and the fungicides epoxiconazole and kresoxim-methyl in summer. Event-driven, high first concentration maxima up to 2830 and 1290 ng/L for thiamethoxam and imidacloprid, respectively, were followed by an extended period of tailing and suggested preferential flow. Nevertheless, mass recoveries declined in agreement with the degradation and sorption properties collated in the groundwater ubiquity score, following the order bromide (4.9%), thiamethoxam (1.2%), imidacloprid (0.48%), kresoxim-methyl acid (0.17%), S-metolachlor (0.032%), epoxiconazole (0.013%), and kresoxim-methyl (0.003%), and indicated increased leaching from seed dressings compared to spray applications. Measured concentrations and mass recoveries indicate that subsurface tile drains contribute to surface water contamination with neonicotinoids from seed dressings.

  6. Surface defect detection in tiling Industries using digital image processing methods: analysis and evaluation.

    PubMed

    Karimi, Mohammad H; Asemani, Davud

    2014-05-01

    Ceramic and tile industries should indispensably include a grading stage to quantify the quality of products. Actually, human control systems are often used for grading purposes. An automatic grading system is essential to enhance the quality control and marketing of the products. Since there generally exist six different types of defects originating from various stages of tile manufacturing lines with distinct textures and morphologies, many image processing techniques have been proposed for defect detection. In this paper, a survey has been made on the pattern recognition and image processing algorithms which have been used to detect surface defects. Each method appears to be limited for detecting some subgroup of defects. The detection techniques may be divided into three main groups: statistical pattern recognition, feature vector extraction and texture/image classification. The methods such as wavelet transform, filtering, morphology and contourlet transform are more effective for pre-processing tasks. Others including statistical methods, neural networks and model-based algorithms can be applied to extract the surface defects. Although, statistical methods are often appropriate for identification of large defects such as Spots, but techniques such as wavelet processing provide an acceptable response for detection of small defects such as Pinhole. A thorough survey is made in this paper on the existing algorithms in each subgroup. Also, the evaluation parameters are discussed including supervised and unsupervised parameters. Using various performance parameters, different defect detection algorithms are compared and evaluated.

  7. Surface defect detection in tiling Industries using digital image processing methods: analysis and evaluation.

    PubMed

    Karimi, Mohammad H; Asemani, Davud

    2014-05-01

    Ceramic and tile industries should indispensably include a grading stage to quantify the quality of products. Actually, human control systems are often used for grading purposes. An automatic grading system is essential to enhance the quality control and marketing of the products. Since there generally exist six different types of defects originating from various stages of tile manufacturing lines with distinct textures and morphologies, many image processing techniques have been proposed for defect detection. In this paper, a survey has been made on the pattern recognition and image processing algorithms which have been used to detect surface defects. Each method appears to be limited for detecting some subgroup of defects. The detection techniques may be divided into three main groups: statistical pattern recognition, feature vector extraction and texture/image classification. The methods such as wavelet transform, filtering, morphology and contourlet transform are more effective for pre-processing tasks. Others including statistical methods, neural networks and model-based algorithms can be applied to extract the surface defects. Although, statistical methods are often appropriate for identification of large defects such as Spots, but techniques such as wavelet processing provide an acceptable response for detection of small defects such as Pinhole. A thorough survey is made in this paper on the existing algorithms in each subgroup. Also, the evaluation parameters are discussed including supervised and unsupervised parameters. Using various performance parameters, different defect detection algorithms are compared and evaluated. PMID:24502941

  8. Analysis of dynamic testing performed on structural clay tile infilled frames

    SciTech Connect

    Fowler, J.J.

    1994-12-18

    The behavior of two structural clay tile infilled frames subjected to dynamic loading is investigated. The testing was performed by USACERL using a biaxial shake table machine on which two framed infills were spaced nine feet apart and connected by steel trusses and an eight inch concrete roof slab. The infills were composed of structural clay tile block which were laid with the cores horizontal. The specimen was loaded in both the out-of-plane and in-plane directions using a site specific time history record. The testing focused on determining frame and panel load-deflection behavior, acceleration amplification, and frequency degradation characteristics. The out-of-plane tests resulted in little degradation of frequency which means there was little loss of stiffness. There was no evidence of the infill {open_quotes}walking-out{close_quotes} of the steel frame; in fact the infill still had substantial stability after completion of the out-of-plane tests. As a result of the gradual increase in ground motion in the in-plane testing, the stiffness of the specimen gradually decreased. Strength and stiffness characteristics obtained from the dynamic testing were comparable to results and behavior seen in static tests. Degradation in the panel was much more rapid under the stronger ground motions which were produced during the sine sweep tests.

  9. Modelling runoff on ceramic tile roofs using the kinematic wave equations

    NASA Astrophysics Data System (ADS)

    Silveira, Alexandre; Abrantes, João; de Lima, João; Lira, Lincoln

    2016-04-01

    Rainwater harvesting is a water saving alternative strategy that presents many advantages and can provide solutions to address major water resources problems, such as fresh water scarcity, urban stream degradation and flooding. In recent years, these problems have become global challenges, due to climatic change, population growth and increasing urbanisation. Generally, roofs are the first to come into contact with rainwater; thus, they are the best candidates for rainwater harvesting. In this context, the correct evaluation of roof runoff quantity and quality is essential to effectively design rainwater harvesting systems. Despite this, many studies usually focus on the qualitative aspects in detriment of the quantitative aspects. Laboratory studies using rainfall simulators have been widely used to investigate rainfall-runoff processes. These studies enabled a detailed exploration and systematic replication of a large range of hydrologic conditions, such as rainfall spatial and temporal characteristics, providing for a fast way to obtain precise and consistent data that can be used to calibrate and validate numerical models. This study aims to evaluate the performance of a kinematic wave based numerical model in simulating runoff on sloping roofs, by comparing the numerical results with the ones obtained from laboratory rainfall simulations on a real-scale ceramic tile roof (Lusa tiles). For all studied slopes, simulated discharge hydrographs had a good adjust to observed ones. Coefficient of determination and Nash-Sutcliffe efficiency values were close to 1.0. Particularly, peak discharges, times to peak and peak durations were very well simulated.

  10. Atomic Force Microscopy of Arrays of Asymmetrical DNA Motifs

    SciTech Connect

    Sherman, W.B.; Mudalige, T.K.

    2012-03-21

    DNA can easily be assembled into wide and relatively flat nanostructures that lend themselves to study via Atomic Force Microscopy (AFM). It is often important to know which side of an assembly the AFM is imaging. This is particularly crucial for characterizing nanomachines, where the movement must be measured relative to fiducial features visible to the AFM. We have developed a cheap and simple technique for building DNA arrays with distinguishable sides, a technique requiring 10 or fewer strands - dozens or hundreds of strands fewer than used for these purposes previously. Our approach involves constructing arrays out of DNA tiles that have low apparent symmetry when imaged via AFM. We have surveyed the effects of varying degrees of motif asymmetry in AFM micrographs. Even at resolutions where the individual tiles cannot be resolved (either because of sub-optimal tip quality, or very gentle tapping by the AFM tip) the larger scale features of the arrays have predictable structures that allow the determination of which side of the array is facing up. We have used this information to verify that DNA hairpins attached to either the up- or down-facing side of an array on mica can be detected in AFM height scans. We have also characterized differences in appearance between hairpins attached to different sides of the arrays.

  11. Array CGH analysis of the rare laryngeal basaloid squamous cell carcinoma - a case report

    PubMed Central

    Ecsedi, Szilvia; Tóth, László; Balázs, Margit

    2012-01-01

    The aim of this study was to define copy number alterations in a rare laryngeal type basaloid squamous cell carcinoma (laryngeal BSCC) using high throughput array comparative genomic hybridization. This is the first genome wide screening of a laryngeal BSCC describing the unique events of DNA copy number changes. By Nimble-Gen Whole Genome Tiling Array CGH (consisting of 72,000 probes) we were able to identify 3,777 genes altered by copy number changes (1,726 genes with copy number gains and 2,051 genes with copy number with losses). The resolution of the array allowed us to identify a new alteration at the 17q21.31 region covering the DUSP3 gene which encodes the dual-specific protein phosphatase. Functional studies of the altered genes (Database for Annotation, Visualization and Integrated Discovery v6.7 analysis) highlighted molecular pathways including chemokine signaling, cell cycle, adherent junction-, VEGF- and TGF-beta signaling pathways that might be disrupted by copy number alterations in laryngeal BSCC. PMID:23071866

  12. Coverage percentage and raman measurement of cross-tile and scaffold cross-tile based DNA nanostructures.

    PubMed

    Gnapareddy, Bramaramba; Ahn, Sang Jung; Dugasani, Sreekantha Reddy; Kim, Jang Ah; Amin, Rashid; Mitta, Sekhar Babu; Vellampatti, Srivithya; Kim, Byeonghoon; Kulkarni, Atul; Kim, Taesung; Yun, Kyusik; LaBean, Thomas H; Park, Sung Ha

    2015-11-01

    We present two free-solution annealed DNA nanostructures consisting of either cross-tile CT1 or CT2. The proposed nanostructures exhibit two distinct structural morphologies, with one-dimensional (1D) nanotubes for CT1 and 2D nanolattices for CT2. When we perform mica-assisted growth annealing with CT1, a dramatic dimensional change occurs where the 1D nanotubes transform into 2D nanolattices due to the presence of the substrate. We assessed the coverage percentage of the 2D nanolattices grown on the mica substrate with CT1 and CT2 as a function of the concentration of the DNA monomer. Furthermore, we fabricated a scaffold cross-tile (SCT), which is a new design of a modified cross-tile that consists of four four-arm junctions with a square aspect ratio. For SCT, eight oligonucleotides are designed in such a way that adjacent strands with sticky ends can produce continuous arms in both the horizontal and vertical directions. The SCT was fabricated via free-solution annealing, and self-assembled SCT produces 2D nanolattices with periodic square cavities. All structures were observed via atomic force microscopy. Finally, we fabricated divalent nickel ion (Ni(2+))- and trivalent dysprosium ion (Dy(3+))-modified 2D nanolattices constructed with CT2 on a quartz substrate, and the ion coordinations were examined via Raman spectroscopy. PMID:26340356

  13. CAD Tools for Creating Space-filing 3D Escher Tiles

    SciTech Connect

    Howison, Mark; Sequin, Carlo H.

    2009-04-10

    We discuss the design and implementation of CAD tools for creating decorative solids that tile 3-space in a regular, isohedral manner. Starting with the simplest case of extruded 2D tilings, we describe geometric algorithms used for maintaining boundary representations of 3D tiles, including a Java implementation of an interactive constrained Delaunay triangulation library and a mesh-cutting algorithm used in layering extruded tiles to create more intricate designs. Finally, we demonstrate a CAD tool for creating 3D tilings that are derived from cubic lattices. The design process for these 3D tiles is more constrained, and hence more difficult, than in the 2D case, and it raises additional user interface issues.

  14. Filler bar heating due to stepped tiles in the shuttle orbiter thermal protection system

    NASA Technical Reports Server (NTRS)

    Petley, D. H.; Smith, D. M.; Edwards, C. L. W.; Patten, A. B.; Hamilton, H. H., II

    1983-01-01

    An analytical study was performed to investigate the excessive heating in the tile to tile gaps of the Shuttle Orbiter Thermal Protection System due to stepped tiles. The excessive heating was evidence by visible discoloration and charring of the filler bar and strain isolation pad that is used in the attachment of tiles to the aluminum substrate. Two tile locations on the Shuttle orbiter were considered, one on the lower surface of the fuselage and one on the lower surface of the wing. The gap heating analysis involved the calculation of external and internal gas pressures and temperatures, internal mass flow rates, and the transient thermal response of the thermal protection system. The results of the analysis are presented for the fuselage and wing location for several step heights. The results of a study to determine the effectiveness of a half height ceramic fiber gap filler in preventing hot gas flow in the tile gaps are also presented.

  15. Inferring the interconnections between surface water bodies, tile-drains and an unconfined aquifer-aquitard system: A case study

    NASA Astrophysics Data System (ADS)

    Colombani, N.; Di Giuseppe, D.; Faccini, B.; Ferretti, G.; Mastrocicco, M.; Coltorti, M.

    2016-06-01

    Shallow lenses in reclaimed coastal areas are precious sources of freshwater for crop development, but their seasonal behaviour is seldom known in tile-drained fields. In this study, field monitoring and numerical modelling provide a robust conceptual model of these complex environments. Crop and meteorological data are used to implement an unsaturated flow model to reconstruct daily recharge. Groundwater fluxes and salinity, water table elevation, tile-drains' discharge and salinity are used to calibrate a 2D density-dependent numerical model to quantify non-reactive solute transport within the aquifer-aquitard system. Results suggest that lateral fluxes in low hydraulic conductivity sediments are limited, while water table fluctuation is significant. The use of depth-integrated monitoring to calibrate the model results in poor efficiency, while multi-level soil profiles are crucial to define the mixing zone between fresh and brackish groundwater. Measured fluxes and chloride concentrations from tile-drains not fully compare with calculated ones due to preferential flow through cracks.

  16. Numerical investigation of the spatial scale and time dependency of tile drainage contribution to stream flow

    NASA Astrophysics Data System (ADS)

    Thomas, Nicholas W.; Arenas, Antonio A.; Schilling, Keith E.; Weber, Larry J.

    2016-07-01

    Tile drainage systems are pervasive in the Central U.S., significantly altering the hydrologic system. The purpose of this study was to assess the effects of tile drainage systems on streamflow. A physically based coupled hydrologic model was applied to a 45 km2 agricultural Iowa watershed. Tile drainage was incorporated though an equivalent porous medium approach, calibrated though numerical experimentation. Experimental results indicated that a significant increase in hydraulic conductivity of the equivalent medium layer was needed to achieve agreement in total outflow with an explicit numerical representation of a tiled system. Watershed scale analysis derived the tile drainage contribution to stream flow (QT/Q) from a numerical tracer driven analysis of instream surface water. During precipitation events tile drainage represented 30% of stream flow, whereas during intervals between precipitations events, 61% of stream flow originated from the tile system. A division of event and non-event periods produced strong correlations between QT/Q and drainage area, positive for events, and negative for non-events. The addition of precipitation into the system acted to saturate near surface soils, increase lateral soil water movement, and dilute the relatively stable instream tile flow. Increased intensity precipitation translated the QT/Q relationship downward in a consistent manner. In non-event durations, flat upland areas contributed large contributions of tile flow, diluted by larger groundwater (non-tile) contribution to stream flow in the downstream steeper portion of the watershed. Study results provide new insights on the spatiotemporal response of tile drainage to precipitation and contributions of tile drainage to streamflow at a watershed scale, with results having important implications for nitrate transport.

  17. Genome-wide oligonucleotide array comparative genomic hybridization for etiological diagnosis of mental retardation: a multicenter experience of 1499 clinical cases.

    PubMed

    Xiang, Bixia; Zhu, Hongbo; Shen, Yiping; Miller, David T; Lu, Kangmo; Hu, Xiaofeng; Andersson, Hans C; Narumanchi, Tarachandra M; Wang, Yueying; Martinez, Jose E; Wu, Bai-Lin; Li, Peining; Li, Marilyn M; Chen, Tian-Jian; Fan, Yao-Shan

    2010-03-01

    To assess the clinical utility of genome-wide oligonucleotide arrays in diagnosis of mental retardation and to address issues relating to interpretation of copy number changes (CNCs), we collected results on a total of 1499 proband patients from five academic diagnostic laboratories where the same 44K array platform has been used. Three of the five laboratories achieved a diagnostic yield of 14% and the other two had a yield of 11 and 7%, respectively. Approximately 80% of the abnormal cases had a single segment deletion or duplication, whereas the remaining 20% had a compound genomic imbalance involving two or more DNA segments. Deletion of 16p11.2 is a common microdeletion syndrome associated with mental retardation. We classified pathogenic CNCs into six groups according to the structural changes. Our data have demonstrated that the 44K platform provides a reasonable resolution for clinical use and a size of 300 kb can be used as a practical cutoff for further investigations of the clinical relevance of a CNC detected with this platform. We have discussed in depth the issues associated with the clinical use of array CGH and provided guidance for interpretation, reporting, and counseling of test results based on our experience. PMID:20093387

  18. ChIP-on-chip analysis methods for Affymetrix tiling arrays.

    PubMed

    Yoder, Sean J

    2015-01-01

    Although the ChIP-sequencing has gained significant attraction recently, ChIP analysis using microarrays is still an attractive option due to the low cost, ease of analysis, and access to legacy and public data sets. The analysis of ChIP-Chip data entails a multistep approach that requires several different applications to progress from the initial stages of raw data analysis to the identification and characterization of ChIP binding sites. There are multiple approaches to data analysis and there are several applications available for each stage of the analysis pipeline. Each application must be evaluated for its suitability for the particular experiment as well as the investigator's background with computational tools. This chapter is a review of the commonly available applications for Affymetrix ChIP-Chip data analysis, as well as the general workflow of a ChIP-Chip analysis approach. The purpose of the chapter is to allow the researcher to better select the appropriate applications and provide them with the direction necessary to proceed with a ChIP-Chip analysis.

  19. Impact: a low cost, reconfigurable, digital beamforming common module building block for next generation phased arrays

    NASA Astrophysics Data System (ADS)

    Paulsen, Lee; Hoffmann, Ted; Fulton, Caleb; Yeary, Mark; Saunders, Austin; Thompson, Dan; Chen, Bill; Guo, Alex; Murmann, Boris

    2015-05-01

    Phased array systems offer numerous advantages to the modern warfighter in multiple application spaces, including Radar, Electronic Warfare, Signals Intelligence, and Communications. However, a lack of commonality in the underlying technology base for DoD Phased Arrays has led to static systems with long development cycles, slow technology refreshes in response to emerging threats, and expensive, application-specific sub-components. The IMPACT module (Integrated Multi-use Phased Array Common Tile) is a multi-channel, reconfigurable, cost-effective beamformer that provides a common building block for multiple, disparate array applications.

  20. Self-assembly of fully addressable DNA nanostructures from double crossover tiles.

    PubMed

    Wang, Wen; Lin, Tong; Zhang, Suoyu; Bai, Tanxi; Mi, Yongli; Wei, Bryan

    2016-09-19

    DNA origami and single-stranded tile (SST) are two proven approaches to self-assemble finite-size complex DNA nanostructures. The construction elements appeared in structures from these two methods can also be found in multi-stranded DNA tiles such as double crossover tiles. Here we report the design and observation of four types of finite-size lattices with four different double crossover tiles, respectively, which, we believe, in terms of both complexity and robustness, will be rival to DNA origami and SST structures.

  1. Self-assembly of fully addressable DNA nanostructures from double crossover tiles

    PubMed Central

    Wang, Wen; Lin, Tong; Zhang, Suoyu; Bai, Tanxi; Mi, Yongli; Wei, Bryan

    2016-01-01

    DNA origami and single-stranded tile (SST) are two proven approaches to self-assemble finite-size complex DNA nanostructures. The construction elements appeared in structures from these two methods can also be found in multi-stranded DNA tiles such as double crossover tiles. Here we report the design and observation of four types of finite-size lattices with four different double crossover tiles, respectively, which, we believe, in terms of both complexity and robustness, will be rival to DNA origami and SST structures. PMID:27484479

  2. Tethers as Debris: Simulating Impacts of Tether Fragments on Shuttle Tiles

    NASA Technical Reports Server (NTRS)

    Evans, Steven W.

    2004-01-01

    The SPHC hydrodynamic code was used to simulate impacts of Kevlar and aluminum projectiles on a model of the LI-900 type insulating tiles used on Space Shuffle Orbiters The intent was to examine likely damage that such tiles might experience if impacted by orbital debris consisting of tether fragments. Projectile speeds ranged from 300 meters per second to 10 kilometers per second. Damage is characterized by penetration depth, tile surface-hole diameter, tile body-cavity diameter, coating fracture diameter, tether and cavity wall material phases, and deformation of the aluminum backwall.

  3. High Resolution Modeling of Tile-Drained Controls on Ecohydrologic Dynamics in Intensively Managed Landscapes.

    NASA Astrophysics Data System (ADS)

    Wagner, D.; Le, P. V.; Kumar, P.; Woo, D.

    2015-12-01

    Tile drains are widely used in the Midwestern United States to improve the productivity of poorly drained agricultural fields. Since tile drain reduces vadose zone soil moisture by lowering the water table, and its outlets feed directly into streams and ditches, tile flow can affect various hydrologic, biotic and biogeochemical processes in the watershed. However, the effects of tile flow on ecohydrologic and nutrient dynamics at scales dominated by microtopographic variability, such as depression and roadside ditches, remain poorly understood. Here we present an explicit model of tile flow and incorporate into the integrated ecohydrologic-flow model, MLCan-GCSFlow, to investigate the impacts of tile drain on ecohydrologic and nutrient dynamics in intensively managed agricultural fields at lidar-resolution scales. Explicit coupling between subsurface and tile flow is obtained by modifications of variably saturated Richards equation to capture the impacts of tile drain on soil moisture. The coupling between subsurface and overland flow is obtained by prescribing a boundary condition switching approach at the top surface of the computational domain. Model results for study sites in Critical Zone Observatory for Intensively Managed Landscapes (IMLCZO) show the significance of tile drain flow on the vertical and spatial soil moisture distribution and coupled surface - sub-surface flow dynamics.

  4. Hypothetical Reentry Thermostructural Performance of Space Shuttle Orbiter With Missing or Eroded Thermal Protection Tiles

    NASA Technical Reports Server (NTRS)

    Ko, William L.; Gong, Leslie; Quinn, Robert D.

    2004-01-01

    This report deals with hypothetical reentry thermostructural performance of the Space Shuttle orbiter with missing or eroded thermal protection system (TPS) tiles. The original STS-5 heating (normal transition at 1100 sec) and the modified STS-5 heating (premature transition at 800 sec) were used as reentry heat inputs. The TPS missing or eroded site is assumed to be located at the center or corner (spar-rib juncture) of the lower surface of wing midspan bay 3. For cases of missing TPS tiles, under the original STS-5 heating, the orbiter can afford to lose only one TPS tile at the center or two TPS tiles at the corner (spar-rib juncture) of the lower surface of wing midspan bay 3. Under modified STS-5 heating, the orbiter cannot afford to lose even one TPS tile at the center or at the corner of the lower surface of wing midspan bay 3. For cases of eroded TPS tiles, the aluminum skin temperature rises relatively slowly with the decreasing thickness of the eroded central or corner TPS tile until most of the TPS tile is eroded away, and then increases exponentially toward the missing tile case.

  5. Ceramic-ceramic shell tile thermal protection system and method thereof

    NASA Technical Reports Server (NTRS)

    Riccitiello, Salvatore R. (Inventor); Smith, Marnell (Inventor); Goldstein, Howard E. (Inventor); Zimmerman, Norman B. (Inventor)

    1986-01-01

    A ceramic reusable, externally applied composite thermal protection system (TPS) is proposed. The system functions by utilizing a ceramic/ceramic upper shell structure which effectively separates its primary functions as a thermal insulator and as a load carrier to transmit loads to the cold structure. The composite tile system also prevents impact damage to the atmospheric entry vehicle thermal protection system. The composite tile comprises a structurally strong upper ceramic/ceramic shell manufactured from ceramic fibers and ceramic matrix meeting the thermal and structural requirements of a tile used on a re-entry aerospace vehicle. In addition, a lightweight high temperature ceramic lower temperature base tile is used. The upper shell and lower tile are attached by means effective to withstand the extreme temperatures (3000 to 3200F) and stress conditions. The composite tile may include one or more layers of variable density rigid or flexible thermal insulation. The assembly of the overall tile is facilitated by two or more locking mechanisms on opposing sides of the overall tile assembly. The assembly may occur subsequent to the installation of the lower shell tile on the spacecraft structural skin.

  6. Microwave energy versus convected hot air for rapidly drying ceramic tile

    SciTech Connect

    Earl, D.A.

    1995-12-31

    The purpose of this study was to determine if microwave energy could provide advantages over the conventional hot air method currently used for rapidly drying ceramic tile. Tiles consisting of a typical fast-fire body formula were dried to 0.5% moisture using a 2.45 GHz, 950W microwave oven and a natural gas-fired roller dryer. Statistical methods were employed to develop equations for predicting microwave energy consumption, tile % moisture and surface temperature given drying time, tile volume and % relative humidity. Microwave drying was found to require 36% less energy than hot air drying. Moisture was removed and surface temperature elevated at faster rates using microwave energy.

  7. A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome

    PubMed Central

    Ganal, Martin W.; Durstewitz, Gregor; Polley, Andreas; Bérard, Aurélie; Buckler, Edward S.; Charcosset, Alain; Clarke, Joseph D.; Graner, Eva-Maria; Hansen, Mark; Joets, Johann; Le Paslier, Marie-Christine; McMullen, Michael D.; Montalent, Pierre; Rose, Mark; Schön, Chris-Carolin; Sun, Qi; Walter, Hildrun; Martin, Olivier C.; Falque, Matthieu

    2011-01-01

    SNP genotyping arrays have been useful for many applications that require a large number of molecular markers such as high-density genetic mapping, genome-wide association studies (GWAS), and genomic selection. We report the establishment of a large maize SNP array and its use for diversity analysis and high density linkage mapping. The markers, taken from more than 800,000 SNPs, were selected to be preferentially located in genes and evenly distributed across the genome. The array was tested with a set of maize germplasm including North American and European inbred lines, parent/F1 combinations, and distantly related teosinte material. A total of 49,585 markers, including 33,417 within 17,520 different genes and 16,168 outside genes, were of good quality for genotyping, with an average failure rate of 4% and rates up to 8% in specific germplasm. To demonstrate this array's use in genetic mapping and for the independent validation of the B73 sequence assembly, two intermated maize recombinant inbred line populations – IBM (B73×Mo17) and LHRF (F2×F252) – were genotyped to establish two high density linkage maps with 20,913 and 14,524 markers respectively. 172 mapped markers were absent in the current B73 assembly and their placement can be used for future improvements of the B73 reference sequence. Colinearity of the genetic and physical maps was mostly conserved with some exceptions that suggest errors in the B73 assembly. Five major regions containing non-colinearities were identified on chromosomes 2, 3, 6, 7 and 9, and are supported by both independent genetic maps. Four additional non-colinear regions were found on the LHRF map only; they may be due to a lower density of IBM markers in those regions or to true structural rearrangements between lines. Given the array's high quality, it will be a valuable resource for maize genetics and many aspects of maize breeding. PMID:22174790

  8. A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome.

    PubMed

    Ganal, Martin W; Durstewitz, Gregor; Polley, Andreas; Bérard, Aurélie; Buckler, Edward S; Charcosset, Alain; Clarke, Joseph D; Graner, Eva-Maria; Hansen, Mark; Joets, Johann; Le Paslier, Marie-Christine; McMullen, Michael D; Montalent, Pierre; Rose, Mark; Schön, Chris-Carolin; Sun, Qi; Walter, Hildrun; Martin, Olivier C; Falque, Matthieu

    2011-01-01

    SNP genotyping arrays have been useful for many applications that require a large number of molecular markers such as high-density genetic mapping, genome-wide association studies (GWAS), and genomic selection. We report the establishment of a large maize SNP array and its use for diversity analysis and high density linkage mapping. The markers, taken from more than 800,000 SNPs, were selected to be preferentially located in genes and evenly distributed across the genome. The array was tested with a set of maize germplasm including North American and European inbred lines, parent/F1 combinations, and distantly related teosinte material. A total of 49,585 markers, including 33,417 within 17,520 different genes and 16,168 outside genes, were of good quality for genotyping, with an average failure rate of 4% and rates up to 8% in specific germplasm. To demonstrate this array's use in genetic mapping and for the independent validation of the B73 sequence assembly, two intermated maize recombinant inbred line populations - IBM (B73×Mo17) and LHRF (F2×F252) - were genotyped to establish two high density linkage maps with 20,913 and 14,524 markers respectively. 172 mapped markers were absent in the current B73 assembly and their placement can be used for future improvements of the B73 reference sequence. Colinearity of the genetic and physical maps was mostly conserved with some exceptions that suggest errors in the B73 assembly. Five major regions containing non-colinearities were identified on chromosomes 2, 3, 6, 7 and 9, and are supported by both independent genetic maps. Four additional non-colinear regions were found on the LHRF map only; they may be due to a lower density of IBM markers in those regions or to true structural rearrangements between lines. Given the array's high quality, it will be a valuable resource for maize genetics and many aspects of maize breeding.

  9. K-Band Phased Array Developed for Low- Earth-Orbit Satellite Communications

    NASA Technical Reports Server (NTRS)

    Anzic, Godfrey

    1999-01-01

    Future rapid deployment of low- and medium-Earth-orbit satellite constellations that will offer various narrow- to wide-band wireless communications services will require phased-array antennas that feature wide-angle and superagile electronic steering of one or more antenna beams. Antennas, which employ monolithic microwave integrated circuits (MMIC), are perfectly suited for this application. Under a cooperative agreement, an MMIC-based, K-band phased-array antenna is being developed with 50/50 cost sharing by the NASA Lewis Research Center and Raytheon Systems Company. The transmitting array, which will operate at 19 gigahertz (GHz), is a state-of-the-art design that features dual, independent, electronically steerable beam operation ( 42 ), a stand-alone thermal management, and a high-density tile architecture. This array can transmit 622 megabits per second (Mbps) in each beam from Earth orbit to small Earth terminals. The weight of the total array package is expected to be less than 8 lb. The tile integration technology (flip chip MMIC tile) chosen for this project represents a major advancement in phased-array engineering and holds much promise for reducing manufacturing costs.

  10. Visible diffraction from quasi-crystalline arrays of carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Butler, Timothy P.; Butt, Haider; Wilkinson, Timothy D.; Amaratunga, Gehan A. J.

    2015-08-01

    Large area arrays of vertically-aligned carbon nanotubes (VACNTs) are patterned in a quasi-crystalline Penrose tile arrangement through electron beam lithography definition of Ni catalyst dots and subsequent nanotube growth by plasma-enhanced chemical vapour deposition. When illuminated with a 532 nm laser beam high-quality and remarkable diffraction patterns are seen. The diffraction is well matched to theoretical calculations which assume apertures to be present at the location of the VACNTs for transmitted light. The results show that VACNTs act as diffractive elements in reflection and can be used as spatially phased arrays for producing tailored diffraction patterns.

  11. Assembly of a tile-based multilayered DNA nanostructure

    NASA Astrophysics Data System (ADS)

    Son, Junyoung; Lee, Junywe; Tandon, Anshula; Kim, Byeonghoon; Yoo, Sanghyun; Lee, Chang-Won; Park, Sung Ha

    2015-04-01

    The Watson-Crick complementarity of DNA is exploited to construct periodically patterned nanostructures, and we herein demonstrate tile-based three dimensional (3D) multilayered DNA nanostructures that incorporate two design strategies: vertical growth and horizontal layer stacking with substrate-assisted growth. To this end, we have designed a periodically holed double-double crossover (DDX) template that can be used to examine the growth of the multilayer structures in both the vertical and horizontal directions. For vertical growth, the traditional 2D double crossover (DX) DNA lattice is seeded and grown vertically from periodic holes in the DDX template. For horizontal stacking, the DDX layers are stacked by binding the connector tiles between each layer. Although both types of multilayers exhibited successful formation, the observations with an atomic force microscope indicated that the DDX layer growth achieved with the horizontal stacking approach could be considered to be slightly better relative to the vertical growth of the DX layers in terms of uniformity, layer size, and discreteness. In particular, the newly designed DDX template layer provided a parallel arrangement between each domain with substrate-assisted growth. This kind of layer arrangement suggests a possibility of using our design scheme in the construction of other periodic structures.The Watson-Crick complementarity of DNA is exploited to construct periodically patterned nanostructures, and we herein demonstrate tile-based three dimensional (3D) multilayered DNA nanostructures that incorporate two design strategies: vertical growth and horizontal layer stacking with substrate-assisted growth. To this end, we have designed a periodically holed double-double crossover (DDX) template that can be used to examine the growth of the multilayer structures in both the vertical and horizontal directions. For vertical growth, the traditional 2D double crossover (DX) DNA lattice is seeded and grown

  12. Program overview of the hollow clay tile wall program

    SciTech Connect

    Not Available

    1992-03-01

    Some of the facilities at the Oak Ridge Y-12 Plant were designed and constructed at a time when either the building codes did not require consideration of earthquake loads or the design requirements were considerably lower than current requirements specified by General Design Criteria, Department of Energy (DOE) Order 6430.lA. Also, some of the buildings were constructed with unreinforced infilled hollow clay tile wails (HCTWs), whose performance in past earthquakes continue to be of concern to designers and to code committees. Martin Marietta Energy Systems Inc. is in a phased program to update the safety documentation for existing facilities known as the Safety Analysis Report Update Program (SARUP). Phase I of SARUP identifies those facilities where natural phenomena (i.e. earthquake, wind/tornado and flood) loading is an initiating or contributing event to accident scenarios with potential human health effects and off-site consequences. Detailed quantitative evaluations are to be performed in Phase III to determine the effects of natural phenomena loadings on such facilities. The HCTW program was developed by the Center for Natural Phenomena Engineering to determine the contribution of HCTWs to the lateral-load-carrying capacity of steel and reinforced concrete frame buildings. The HCRW program consists of laboratory tests of unit tiles, assemblages of tiles, and HCT walls influed in steel frames; in situ tests of a full size wall and portions of walls; and analytical studies directed toward incorporating the test results into analysis methodologies for seismic structural analyses. This report gives an overview of the HC-RW program and presents an approach for applying the HCTW program results to meet DOE requirements for evaluating existing DOE facilities for natural phenomena hazards as defined in DOE 6430.lA. The program supports the Phase II SARUP evaluations for the Y-12 plant.

  13. White paper on the Hollow Clay Tile Wall Program

    SciTech Connect

    Not Available

    1992-03-01

    Some of the facilities at the Oak Ridge Y-12 Plant were designed and constructed at a time when either the building codes did not require consideration of earthquake loads or the design requirements were considerably lower than current requirements specified by General Design Criteria, Department of Energy (DOE) Order 6430.1A. Also, some of these buildings were constructed with unreinforced hollow clay tile walls (HCTWs), whose performance in past earthquakes continue to be of concern to designers and to code committees. Martin Marietta Energy Systems Inc. is conducting a phased program to update the safety documentation for exiting facilities. Phase I of the Safety Analysis Report Update Program (SARUP) identifies those facilities where natural phenomena (i.e. earthquake, wind/tornado and flood) loading is an initiating or contributing event to accident scenarios with potential human health effects. Detailed quantitative evaluations are performed in Phase II for the effects of natural phenomena loadings. The HCIW program was developed to determine the contribution of HCTWs to the lateral-load-carrying capacity of steel and reinforced concrete frame buildings. The HC-IV program consists of laboratory tests of unit tiles, assemblages of tiles, and HCT walls enfilled in steel frames; in situ tests of a full size wall and portions of wails; and analytical studies directed toward incorporating the test results into analysis methodologies for seismic structural analyses. This report examines the underlying basis of the HCTW program. Also, an approach is presented for applying the HCTW program results to meet DOE requirements for evaluating existing DOE facilities for natural phenomena hazards as defined in DOE 6430.1A. The program supports the Phase II SARUP evaluations for the Y-12 Plant.

  14. Aerodynamic pressure and heating-rate distributions in tile gaps around chine regions with pressure gradients at a Mach number of 6.6

    NASA Astrophysics Data System (ADS)

    Hunt, L. Roane; Notestine, Kristopher K.

    1990-06-01

    Surface and gap pressures and heating-rate distributions were obtained for simulated Thermal Protection System (TPS) tile arrays on the curved surface test apparatus of the Langley 8-Foot High Temperature Tunnel at Mach 6.6. The results indicated that the chine gap pressures varied inversely with gap width because larger gap widths allowed greater venting from the gap to the lower model side pressures. Lower gap pressures caused greater flow ingress from the surface and increased gap heating. Generally, gap heating was greater in the longitudinal gaps than in the circumferential gaps. Gap heating decreased with increasing gap depth. Circumferential gap heating at the mid-depth was generally less than about 10 percent of the external surface value. Gap heating was most severe at local T-gap junctions and tile-to-tile forward-facing steps that caused the greatest heating from flow impingement. The use of flow stoppers at discrete locations reduced heating from flow impingement. The use of flow stoppers at discrete locations reduced heating in most gaps but increased heating in others. Limited use of flow stoppers or gap filler in longitudinal gaps could reduce gap heating in open circumferential gaps in regions of high surface pressure gradients.

  15. Aerodynamic pressure and heating-rate distributions in tile gaps around chine regions with pressure gradients at a Mach number of 6.6

    NASA Technical Reports Server (NTRS)

    Hunt, L. Roane; Notestine, Kristopher K.

    1990-01-01

    Surface and gap pressures and heating-rate distributions were obtained for simulated Thermal Protection System (TPS) tile arrays on the curved surface test apparatus of the Langley 8-Foot High Temperature Tunnel at Mach 6.6. The results indicated that the chine gap pressures varied inversely with gap width because larger gap widths allowed greater venting from the gap to the lower model side pressures. Lower gap pressures caused greater flow ingress from the surface and increased gap heating. Generally, gap heating was greater in the longitudinal gaps than in the circumferential gaps. Gap heating decreased with increasing gap depth. Circumferential gap heating at the mid-depth was generally less than about 10 percent of the external surface value. Gap heating was most severe at local T-gap junctions and tile-to-tile forward-facing steps that caused the greatest heating from flow impingement. The use of flow stoppers at discrete locations reduced heating from flow impingement. The use of flow stoppers at discrete locations reduced heating in most gaps but increased heating in others. Limited use of flow stoppers or gap filler in longitudinal gaps could reduce gap heating in open circumferential gaps in regions of high surface pressure gradients.

  16. Modelling the viscoelasticity of ceramic tiles by finite element

    NASA Astrophysics Data System (ADS)

    Pavlovic, Ana; Fragassa, Cristiano

    2016-05-01

    This research details a numerical method aiming at investigating the viscoelastic behaviour of a specific family of ceramic material, the Grès Porcelain, during an uncommon transformation, known as pyroplasticity, which occurs when a ceramic tile bends under a combination of thermal stress and own weight. In general, the theory of viscoelasticity can be considered extremely large and precise, but its application on real cases is particularly delicate. A time-depending problem, as viscoelasticity naturally is, has to be merged with a temperature-depending situation. This paper investigates how the viscoelastic response of bending ceramic materials can be modelled by commercial Finite Elements codes.

  17. Shake table testing of structural clay tile infilled frames

    SciTech Connect

    Bennett, R.M.; Fowler, J.J.; Flanagan, R.D.

    1996-03-08

    Two steel frames with structural clay tile infills were tested under simulated seismic loads in both the out-of-plane and in-plane direction. Out-of-plane testing showed that infill panels separate from their bounding frame, and respond at their own natural frequency during a seismic excitation. Due to arching, the panels remain stable. In-plane seismic testing showed similar behavior patterns to previous static testing. The natural frequency was adequately predicted using a piecewise linear equivalent strut analytical method. The structure was then subjected to over one thousand cycles of loading using a sine sweep before failure.

  18. Fracture characterisation using geoelectric null-arrays

    NASA Astrophysics Data System (ADS)

    Falco, Pierik; Negro, François; Szalai, Sándor; Milnes, Ellen

    2013-06-01

    The term "geoelectric null-array" is used for direct current electrode configurations yielding a potential difference of zero above a homogeneous half-space. This paper presents a comparative study of the behaviour of three null-arrays, midpoint null-array (MAN), Wenner-γ null-array and Schlumberger null-array in response to a fracture, both in profiling and in azimuthal mode. The main objective is to determine which array(s) best localise fractures or best identify their orientation. Forward modelling of the three null-arrays revealed that the Wenner-γ and Schlumberger null-arrays localise vertical fractures the most accurately, whilst the midpoint null-array combined with the Schlumberger null-array allows accurate orientation of a fracture. Numerical analysis then served as a basis to interpret the field results. Field test measurements were carried out above a quarry in Les Breuleux (Switzerland) with the three null-arrays and classical arrays. The results were cross-validated with quarry-wall geological mapping. In real field circumstances, the Wenner-γ null-array proved to be the most efficient and accurate in localising fractures. The orientations of the fractures according to the numerical results were most efficiently determined with the midpoint null-array, whilst the Schlumberger null-array adds accuracy to the results. This study shows that geoelectrical null-arrays are more suitable than classical arrays for the characterisation of fracture geometry.

  19. New family of tilings of three-dimensional Euclidean space by tetrahedra and octahedra.

    PubMed

    Conway, John H; Jiao, Yang; Torquato, Salvatore

    2011-07-01

    It is well known that two regular tetrahedra can be combined with a single regular octahedron to tile (complete fill) three-dimensional Euclidean space . This structure was called the "octet truss" by Buckminster Fuller. It was believed that such a tiling, which is the Delaunay tessellation of the face-centered cubic (fcc) lattice, and its closely related stacking variants, are the only tessellations of that involve two different regular polyhedra. Here we identify and analyze a unique family comprised of a noncountably infinite number of periodic tilings of whose smallest repeat tiling unit consists of one regular octahedron and six smaller regular tetrahedra. We first derive an extreme member of this unique tiling family by showing that the "holes" in the optimal lattice packing of octahedra, obtained by Minkowski over a century ago, are congruent tetrahedra. This tiling has 694 distinct concave (i.e., nonconvex) repeat units, 24 of which possess central symmetry, and hence is distinctly different and combinatorically richer than the fcc tetrahedra-octahedra tiling, which only has two distinct tiling units. Then we construct a one-parameter family of octahedron packings that continuously spans from the fcc to the optimal lattice packing of octahedra. We show that the "holes" in these packings, except for the two extreme cases, are tetrahedra of two sizes, leading to a family of periodic tilings with units composed four small tetrahedra and two large tetrahedra that contact an octahedron. These tilings generally possess 2,068 distinct concave tiling units, 62 of which are centrally symmetric.

  20. New family of tilings of three-dimensional Euclidean space by tetrahedra and octahedra

    PubMed Central

    Conway, John H.; Jiao, Yang; Torquato, Salvatore

    2011-01-01

    It is well known that two regular tetrahedra can be combined with a single regular octahedron to tile (complete fill) three-dimensional Euclidean space . This structure was called the “octet truss” by Buckminster Fuller. It was believed that such a tiling, which is the Delaunay tessellation of the face-centered cubic (fcc) lattice, and its closely related stacking variants, are the only tessellations of that involve two different regular polyhedra. Here we identify and analyze a unique family comprised of a noncountably infinite number of periodic tilings of whose smallest repeat tiling unit consists of one regular octahedron and six smaller regular tetrahedra. We first derive an extreme member of this unique tiling family by showing that the “holes” in the optimal lattice packing of octahedra, obtained by Minkowski over a century ago, are congruent tetrahedra. This tiling has 694 distinct concave (i.e., nonconvex) repeat units, 24 of which possess central symmetry, and hence is distinctly different and combinatorically richer than the fcc tetrahedra-octahedra tiling, which only has two distinct tiling units. Then we construct a one-parameter family of octahedron packings that continuously spans from the fcc to the optimal lattice packing of octahedra. We show that the “holes” in these packings, except for the two extreme cases, are tetrahedra of two sizes, leading to a family of periodic tilings with units composed four small tetrahedra and two large tetrahedra that contact an octahedron. These tilings generally possess 2,068 distinct concave tiling units, 62 of which are centrally symmetric. PMID:21690370

  1. Radioactivity measurement of primordial radionuclides in and dose evaluation from marble and glazed tiles used as covering building materials in Turkey.

    PubMed

    Turhan, Ş; Varinlioğlu, A

    2012-09-01

    Measurements of the natural radioactivity arising from primordial radionuclides ((226)Ra, (232)Th and (40)K) in marble and glazed tile samples used covering building materials in Turkey were carried out by gamma-ray spectrometer with a high purity germanium detector. The mean activity concentrations of the (226)Ra, (232)Th and (40)K in marble and glazed tile samples were found as 8.2, 5.5 and 58.1 Bq kg(-1) and 81.2, 65.4 and 450.1 Bq kg(-1), respectively. The radiation doses received by occupants of buildings in which the sample marble and glazed tiles might be used are estimated using measured activity concentrations of constituent primordial radionuclides and dose conversion factors evaluated by the European Commission from models of tile use. Results obtained are presented for each radionuclide, analysed and compared with relevant national and international legislation, guidance and report, and with the results obtained from other studies. Results show that the use of such decorative building materials in the construction of domestic homes or workplaces in Turkey is unlikely to lead to any significant radiation exposure to the occupants.

  2. Modelling runoff on ceramic tile roofs using the kinematic wave equations.

    PubMed

    Silveira, A; Abrantes, J R C B; de Lima, J L M P; Lira, L C

    2016-01-01

    Generally, roofs are the best candidates for rainwater harvesting. In this context, the correct evaluation of the quantity and quality of runoff from roofs is essential to effectively design rainwater harvesting systems. This study aims to evaluate the performance of a kinematic wave based numerical model in simulating runoff on sloping roofs, by comparing the numerical results with the ones obtained from laboratory rainfall simulations on a real-scale Lusa ceramic tile roof. For all studied slopes, simulated discharge hydrographs had a good adjust to observed ones. Coefficient of determination and Nash-Sutcliffe efficiency values were close to 1.0. Particularly, peak discharges, times to peak, peak durations and runoff volumes were very well simulated. PMID:27232420

  3. Microlens arrays

    NASA Astrophysics Data System (ADS)

    Hutley, Michael C.; Stevens, Richard F.; Daly, Daniel J.

    1992-04-01

    Microlenses have been with us for a long time as indeed the very word lens reminds us. Many early lenses,including those made by Hooke and Leeuwenhoek in the 17th century were small and resembled lentils. Many languages use the same word for both (French tilentillelt and German "Linse") and the connection is only obscure in English because we use the French word for the vegetable and the German for the optic. Many of the applications for arrays of inicrolenses are also well established. Lippmann's work on integral photography at the turn of the century required lens arrays and stimulated an interest that is very much alive today. At one stage, lens arrays played an important part in high speed photography and various schemes have been put forward to take advantage of the compact imaging properties of combinations of lens arrays. The fact that many of these ingenious schemes have not been developed to their full potential has to a large degree been due to the absence of lens arrays of a suitable quality and cost.

  4. Numerical methods for analysis of clay tile infills

    SciTech Connect

    Flanagan, R.D.; Tenbus, M.A.; Bennett, R.M.

    1993-10-20

    Recent Department of Energy requirements have led to a comprehensive evaluation of the industrial facilities at the Oak Ridge Y-12 Plant. The structures consist of simply connected steel frames infilled with structural clay tile walls. The objective of the evaluation was to determine the stability of the unreinforced infills, and whether they provide the lateral capacity necessary to resist the moderate seismic hazard at the site. Due to lack of information on the behavior of structural clay tile infills, various large-scale tests were performed to investigate the in-plane, out-of-plane and combined in-plane and out-of-plane behavior. The results of these tests are briefly summarized, and the development of analytical guidelines based on these tests is given. Little interaction between in-plane and out-of-plane loads was observed, both in terms of stiffness and strength. Out-of-plane stability can be examined panel by panel based on arching action. Inter-story drift does not appear to present a stability problem for the type of infill construction investigated. In-plane behavior may be adequately modeled with a nonlinear compression strut. A typical building is chosen for an illustrative application. The methodology and results of the seismic analysis are presented for this structure.

  5. Non isothermal drying process optimisation - Drying of clay tiles

    NASA Astrophysics Data System (ADS)

    Vasić, M.; Radojević, Z.

    2015-11-01

    In our previous studies we have developed a model for determination of the variable effective diffusivity and identification of the exact transition points between possible drying mechanisms. The next goal was to develop a drying regime which could in advance characterize the real non isothermal process of drying clay tiles. In order to do this four isothermal experiments were recorded. Temperature and humidity were maintained at 350C / 75%; 450C / 70%; 450C / 60% and 500C / 60%; respectively in each experiment. All experimentally collected data were analyzed and the exact transition points between possible drying mechanisms were detected. Characteristic drying period (time) for each isothermal drying mechanism was also detected. The real, non-isothermal drying process was approximated by 5 segments. In each of these segments approximately isothermal drying condition were maintained. Temperature and humidity of the drying air, in the first four segments, was maintained on the same level as in recorded isothermal experiments while in the fifth segment, it were maintained at 700C / 40%. The duration of the first four segments were calculated from the diagrams Deff - t respectively for each experiment. The clay tile in experiment five was dried without cracking using the proposed non isothermal drying regime.

  6. Size-Topology Correlations and Crystallization in Tilings and Packings

    NASA Astrophysics Data System (ADS)

    Hilgenfeldt, Sascha

    2014-03-01

    Ever since its empirical formulation in 1928, Lewis`s law has intrigued scientists, postulating a linear correlation between the average in-plane area and the number of neighbors in a two-dimensional tiling. Many supporting and dissenting results have been reported in systems as diverse as foams, Voronoi tilings in glass models, and nanocrystals. A strong size-topology correlation is consistently observed, but it is often pronouncedly nonlinear. Recently, a variant of the granocentric model explained numerous cases of nonlinear correlations, but cannot account for the linear version of the law. We revisit Lewis's original work by conducting more extensive experiments on cucumber epidermis tissue. The data confirms the linear law, but also shows that the individual cells have a pronounced anisotropy, not present in systems with nonlinear correlation laws. We demonstrate how the granocentric model can be modified taking into account the cell anisotropy, and how this feature is capable of reproducing the linear Lewis law, as well as other characteristic differences in size-topology statistical quantities. The model should be generally applicable to jammed, plane-filling systems and identifies domain anisotropy as an important ingredient in their statistical description.

  7. Space Shuttle Communications Coverage Analysis for Thermal Tile Inspection

    NASA Technical Reports Server (NTRS)

    Kroll, Quin D.; Hwu, Shian U.; Upanavage, Matthew; Boster, John P.; Chavez, Mark A.

    2009-01-01

    The space shuttle ultra-high frequency Space-to-Space Communication System has to provide adequate communication coverage for astronauts who are performing thermal tile inspection and repair on the underside of the space shuttle orbiter (SSO). Careful planning and quantitative assessment are necessary to ensure successful system operations and mission safety in this work environment. This study assesses communication systems performance for astronauts who are working in the underside, non-line-of-sight shadow region on the space shuttle. All of the space shuttle and International Space Station (ISS) transmitting antennas are blocked by the SSO structure. To ensure communication coverage at planned inspection worksites, the signal strength and link margin between the SSO/ISS antennas and the extravehicular activity astronauts, whose line-of-sight is blocked by vehicle structure, was analyzed. Investigations were performed using rigorous computational electromagnetic modeling techniques. Signal strength was obtained by computing the reflected and diffracted fields along the signal propagation paths between transmitting and receiving antennas. Radio frequency (RF) coverage was determined for thermal tile inspection and repair missions using the results of this computation. Analysis results from this paper are important in formulating the limits on reliable communication range and RF coverage at planned underside inspection and repair worksites.

  8. Close-up of Shuttle Thermal Tiles in Space

    NASA Technical Reports Server (NTRS)

    2005-01-01

    Launched on July 26, 2005 from the Kennedy Space Center in Florida, STS-114 was classified as Logistics Flight 1. Among the Station-related activities of the mission were the delivery of new supplies and the replacement of one of the orbital outpost's Control Moment Gyroscopes (CMGs). STS-114 also carried the Raffaello Multi-Purpose Logistics Module and the External Stowage Platform-2. A major focus of the mission was the testing and evaluation of new Space Shuttle flight safety, which included new inspection and repair techniques. Upon its approach to the International Space Station (ISS), the Space Shuttle Discovery underwent a photography session in order to assess any damages that may have occurred during its launch and/or journey through Space. The mission's third and final Extra Vehicular Activity (EVA) included taking a close-up look and the repair of the damaged heat shield. Gap fillers were removed from between the orbiter's heat-shielding tiles located on the craft's underbelly. Never before had any repairs been done to an orbiter while still in space. This particular photo was taken by astronaut Stephen K. Robinson, STS-114 mission specialist, whose shadow is visible on the thermal protection tiles, and a portion of the Canadian built Remote Manipulator System (RMS) robotic arm and the Nile River is visible at the bottom.

  9. Emergence of limit-periodic order in tiling models.

    PubMed

    Marcoux, Catherine; Byington, Travis W; Qian, Zongjin; Charbonneau, Patrick; Socolar, Joshua E S

    2014-07-01

    A two-dimensional (2D) lattice model defined on a triangular lattice with nearest- and next-nearest-neighbor interactions based on the Taylor-Socolar monotile is known to have a limit-periodic ground state. The system reaches that state during a slow quench through an infinite sequence of phase transitions. We study the model as a function of the strength of the next-nearest-neighbor interactions and introduce closely related 3D models with only nearest-neighbor interactions that exhibit limit-periodic phases. For models with no next-nearest-neighbor interactions of the Taylor-Socolar type, there is a large degenerate class of ground states, including crystalline patterns and limit-periodic ones, but a slow quench still yields the limit-periodic state. For the Taylor-Socolar lattic model, we present calculations of the diffraction pattern for a particular decoration of the tile that permits exact expressions for the amplitudes and identify domain walls that slow the relaxation times in the ordered phases. For one of the 3D models, we show that the phase transitions are first order, with equilibrium structures that can be more complex than in the 2D case, and we include a proof of aperiodicity for a geometrically simple tile with only nearest-neighbor matching rules. PMID:25122280

  10. Preferential flow estimates to an agricultural tile drain with implications for glyphosate transport

    USGS Publications Warehouse

    Stone, W.W.; Wilson, J.T.

    2006-01-01

    Agricultural subsurface drains, commonly referred to as tile drains, are potentially significant pathways for the movement of fertilizers and pesticides to streams and ditches in much of the Midwest. Preferential flow in the unsaturated zone provides a route for water and solutes to bypass the soil matrix and reach tile drains faster than predicted by traditional displacement theory. This paper uses chloride concentrations to estimate preferential flow contributions to a tile drain during two storms in May 2004. Chloride, a conservative anion, was selected as the tracer because of differences in chloride concentrations between the two sources of water to the tile drain, preferential and matrix flow. A strong correlation between specific conductance and chloride concentration provided a mechanism to estimate chloride concentrations in the tile drain throughout the storm hydrographs. A simple mixing analysis was used to identify the preferential flow component of the storm hydrograph. During two storms, preferential flow contributed 11 and 51% of total storm tile drain flow; the peak contributions, 40 and 81%, coincided with the peak tile drain flow. Positive relations between glyphosate [N-(phosphonomethyl)glycine] concentrations and preferential flow for the two storms suggest that preferential flow is an important transport pathway to the tile drain. ?? ASA, CSSA, SSSA.

  11. A Scintillator tile-fiber preshower detector for the CDF Central Calorimeter

    SciTech Connect

    S. Lami

    2004-08-12

    The front face of the CDF central calorimeter is being equipped with a new Preshower detector, based on scintillator tiles read out by WLS fibers. A light yield of about 40 pe/MIP at the tile exit was obtained, exceeding the design requirements.

  12. Supporting Students' Understanding of Linear Equations with One Variable Using Algebra Tiles

    ERIC Educational Resources Information Center

    Saraswati, Sari; Putri, Ratu Ilma Indra; Somakim

    2016-01-01

    This research aimed to describe how algebra tiles can support students' understanding of linear equations with one variable. This article is a part of a larger research on learning design of linear equations with one variable using algebra tiles combined with balancing method. Therefore, it will merely discuss one activity focused on how students…

  13. Automated 3D Damaged Cavity Model Builder for Lower Surface Acreage Tile on Orbiter

    NASA Technical Reports Server (NTRS)

    Belknap, Shannon; Zhang, Michael

    2013-01-01

    The 3D Automated Thermal Tool for Damaged Acreage Tile Math Model builder was developed to perform quickly and accurately 3D thermal analyses on damaged lower surface acreage tiles and structures beneath the damaged locations on a Space Shuttle Orbiter. The 3D model builder created both TRASYS geometric math models (GMMs) and SINDA thermal math models (TMMs) to simulate an idealized damaged cavity in the damaged tile(s). The GMMs are processed in TRASYS to generate radiation conductors between the surfaces in the cavity. The radiation conductors are inserted into the TMMs, which are processed in SINDA to generate temperature histories for all of the nodes on each layer of the TMM. The invention allows a thermal analyst to create quickly and accurately a 3D model of a damaged lower surface tile on the orbiter. The 3D model builder can generate a GMM and the correspond ing TMM in one or two minutes, with the damaged cavity included in the tile material. A separate program creates a configuration file, which would take a couple of minutes to edit. This configuration file is read by the model builder program to determine the location of the damage, the correct tile type, tile thickness, structure thickness, and SIP thickness of the damage, so that the model builder program can build an accurate model at the specified location. Once the models are built, they are processed by the TRASYS and SINDA.

  14. Grammar Tiles: An Opportunity for Manipulatives in the Language Arts Classroom (Middle Ground).

    ERIC Educational Resources Information Center

    Atlee, Marilyn; Hardin, Linda Friddle

    1995-01-01

    Presents 2 articles concentrating on middle-school teaching: 1 that describes how a teacher, using 12 zip-lock sandwich bags and 300 small ceramic tiles, may create "grammar tiles," a method for teaching the parts of speech; and another that describes several innovative ways in which students have learned to work with language while manipulating…

  15. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS (CONTINUED) ASBESTOS MANUFACTURING POINT SOURCE CATEGORY Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor...

  16. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS (CONTINUED) ASBESTOS MANUFACTURING POINT SOURCE CATEGORY Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor...

  17. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS (CONTINUED) ASBESTOS MANUFACTURING POINT SOURCE CATEGORY Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor...

  18. Carbon nanotube array actuators

    NASA Astrophysics Data System (ADS)

    Geier, S.; Mahrholz, T.; Wierach, P.; Sinapius, M.

    2013-09-01

    Experimental investigations of highly vertically aligned carbon nanotubes (CNTs), also known as CNT-arrays, are the main focus of this paper. The free strain as result of an active material behavior is analyzed via a novel experimental setup. Previous test experiences of papers made of randomly oriented CNTs, also called Bucky-papers, reveal comparably low free strain. The anisotropy of aligned CNTs promises better performance. Via synthesis techniques like chemical vapor deposition (CVD) or plasma enhanced CVD (PECVD), highly aligned arrays of multi-walled carbon nanotubes (MWCNTs) are synthesized. Two different types of CNT-arrays are analyzed, morphologically first, and optically tested for their active characteristics afterwards. One type of the analyzed arrays features tube lengths of 750-2000 μm with a large variety of diameters between 20 and 50 nm and a wave-like CNT-shape. The second type features a maximum, almost uniform, length of 12 μm and a constant diameter of 50 nm. Different CNT-lengths and array types are tested due to their active behavior. As result of the presented tests, it is reported that the quality of orientation is the most decisive property for excellent active behavior. Due to their alignment, CNT-arrays feature the opportunity to clarify the actuation mechanism of architectures made of CNTs.

  19. The NMR phased array.

    PubMed

    Roemer, P B; Edelstein, W A; Hayes, C E; Souza, S P; Mueller, O M

    1990-11-01

    We describe methods for simultaneously acquiring and subsequently combining data from a multitude of closely positioned NMR receiving coils. The approach is conceptually similar to phased array radar and ultrasound and hence we call our techniques the "NMR phased array." The NMR phased array offers the signal-to-noise ratio (SNR) and resolution of a small surface coil over fields-of-view (FOV) normally associated with body imaging with no increase in imaging time. The NMR phased array can be applied to both imaging and spectroscopy for all pulse sequences. The problematic interactions among nearby surface coils is eliminated (a) by overlapping adjacent coils to give zero mutual inductance, hence zero interaction, and (b) by attaching low input impedance preamplifiers to all coils, thus eliminating interference among next nearest and more distant neighbors. We derive an algorithm for combining the data from the phased array elements to yield an image with optimum SNR. Other techniques which are easier to implement at the cost of lower SNR are explored. Phased array imaging is demonstrated with high resolution (512 x 512, 48-cm FOV, and 32-cm FOV) spin-echo images of the thoracic and lumbar spine. Data were acquired from four-element linear spine arrays, the first made of 12-cm square coils and the second made of 8-cm square coils. When compared with images from a single 15 x 30-cm rectangular coil and identical imaging parameters, the phased array yields a 2X and 3X higher SNR at the depth of the spine (approximately 7 cm). PMID:2266841

  20. Advanced Modeling Strategies for the Analysis of Tile-Reinforced Composite Armor

    NASA Technical Reports Server (NTRS)

    Davila, Carlos G.; Chen, Tzi-Kang

    1999-01-01

    A detailed investigation of the deformation mechanisms in tile-reinforced armored components was conducted to develop the most efficient modeling strategies for the structural analysis of large components of the Composite Armored Vehicle. The limitations of conventional finite elements with respect to the analysis of tile-reinforced structures were examined, and two complementary optimal modeling strategies were developed. These strategies are element layering and the use of a tile-adhesive superelement. Element layering is a technique that uses stacks of shear deformable shell elements to obtain the proper transverse shear distributions through the thickness of the laminate. The tile-adhesive superelement consists of a statically condensed substructure model designed to take advantage of periodicity in tile placement patterns to eliminate numerical redundancies in the analysis. Both approaches can be used simultaneously to create unusually efficient models that accurately predict the global response by incorporating the correct local deformation mechanisms.

  1. Terahertz NDE Application for Corrosion Detection and Evaluation under Shuttle Tiles

    NASA Technical Reports Server (NTRS)

    Anastasi, Robert F.; Madaras, Eric I.; Seebo, Jeffrey P.; Smith, Stephen W.; Lomness, Janice K.; Hintze, Paul E.; Kammerer, Catherine C.; Winfree, William P.; Russell, Richard W.

    2007-01-01

    Pulsed Terahertz NDE is being examined as a method to inspect for possible corrosion under Space Shuttle Tiles. Other methods such as ultrasonics, infrared, eddy current and microwave technologies have demonstrable shortcomings for tile NDE. This work applies Terahertz NDE, in the frequency range between 50 GHz and 1 THz, for the inspection of manufactured corrosion samples. The samples consist of induced corrosion spots that range in diameter (2.54 to 15.2 mm) and depth (0.036 to 0.787 mm) in an aluminum substrate material covered with tiles. Results of these measurements are presented for known corrosion flaws both covered and uncovered and for blind tests with unknown corrosion flaws covered with attached tiles. The Terahertz NDE system is shown to detect all artificially manufactured corrosion regions under a Shuttle tile with a depth greater than 0.13 mm.

  2. Interface porcelain tile/PVA modified mortar: a novel nanostructure approach.

    PubMed

    Mansur, Alexandra Ancelmo Piscitelli; Mansur, Herman Sander

    2009-02-01

    In ceramic tile systems, the overall result of adherence between porcelain tiles and polymer modified mortars could be explained based on the nano-order structure that is developed at the interface. Based on pull-off tests, Scanning Electron Microscopy images, and Small Angle X-ray Scattering experiments a nanostructured approach for interface tile/PVA modified mortar was built. The increase of adhesion between tile and mortar due to poly(vinyl alcohol), PVA, addition can be explained by the formation of a hybrid ceramic-polymer-ceramic interface by hydrogen bonds between PVA hydroxyl groups and silanol from tile surface and water from nanostructured C-S-H gel interlayer.

  3. 2D tritium distribution on tungsten tiles used in JET ITER-like wall project

    NASA Astrophysics Data System (ADS)

    Hatano, Y.; Widdowson, A.; Bekris, N.; Ayres, C.; Baron-Wiechec, A.; Likonen, J.; Koivuranta, S.; Ikonen, J.; Yumizuru, K.

    2015-08-01

    Post-mortem measurements of 2-dimensional tritium (T) distribution using an imaging plate (IP) technique were performed for tungsten (W) divertor tiles (W-coated CFC) used in JET-ITER like wall (ILW) project. The observed T distributions were clearly inhomogeneous, and there were band-like regions with high T concentrations that extended in the toroidal direction on tiles 1, 3, 4 and 6. The concentrations of T in the band-like regions were higher by an order of magnitude than the concentrations in other parts. The inhomogeneous T distributions were explained by non-uniform co-deposition with other elements such as beryllium. The concentrations of T on the outboard vertical tiles (tiles 7 and 8) were low and relatively uniform in comparison with other tiles.

  4. Porosity Detection in Ceramic Armor Tiles via Ultrasonic Time-Of

    NASA Astrophysics Data System (ADS)

    Margetan, Frank J.; Richter, Nathaniel; Jensen, Terrence

    2011-06-01

    Some multilayer armor panels contain ceramic tiles as one constituent, and porosity in the tiles can affect armor performance. It is well known that porosity in ceramic materials leads to a decrease in ultrasonic velocity. We report on a feasibility study exploring the use of ultrasonic time-of-flight (TOF) to locate and characterize porous regions in armor tiles. The tiles in question typically have well-controlled thickness, thus simplifying the translation of TOF data into velocity data. By combining UT velocity measurements and X-ray absorption measurements on selected specimens, one can construct a calibration curve relating velocity to porosity. That relationship can then be used to translate typical ultrasonic C-scans of TOF-versus-position into C-scans of porosity-versus-position. This procedure is demonstrated for pulse/echo, focused-transducer inspections of silicon carbide (SiC) ceramic tiles.

  5. Porosity detection in ceramic armor tiles via ultrasonic time-of-flight

    SciTech Connect

    Margetan, Frank J.; Richter, Nathaniel; Jensen, Terrence

    2011-06-23

    Some multilayer armor panels contain ceramic tiles as one constituent, and porosity in the tiles can affect armor performance. It is well known that porosity in ceramic materials leads to a decrease in ultrasonic velocity. We report on a feasibility study exploring the use of ultrasonic time-of-flight (TOF) to locate and characterize porous regions in armor tiles. The tiles in question typically have well-controlled thickness, thus simplifying the translation of TOF data into velocity data. By combining UT velocity measurements and X-ray absorption measurements on selected specimens, one can construct a calibration curve relating velocity to porosity. That relationship can then be used to translate typical ultrasonic C-scans of TOF-versus-position into C-scans of porosity-versus-position. This procedure is demonstrated for pulse/echo, focused-transducer inspections of silicon carbide (SiC) ceramic tiles.

  6. An Automated Approach to Agricultural Tile Drain Detection and Extraction Utilizing High Resolution Aerial Imagery and Object-Based Image Analysis

    NASA Astrophysics Data System (ADS)

    Johansen, Richard A.

    Subsurface drainage from agricultural fields in the Maumee River watershed is suspected to adversely impact the water quality and contribute to the formation of harmful algal blooms (HABs) in Lake Erie. In early August of 2014, a HAB developed in the western Lake Erie Basin that resulted in over 400,000 people being unable to drink their tap water due to the presence of a toxin from the bloom. HAB development in Lake Erie is aided by excess nutrients from agricultural fields, which are transported through subsurface tile and enter the watershed. Compounding the issue within the Maumee watershed, the trend within the watershed has been to increase the installation of tile drains in both total extent and density. Due to the immense area of drained fields, there is a need to establish an accurate and effective technique to monitor subsurface farmland tile installations and their associated impacts. This thesis aimed at developing an automated method in order to identify subsurface tile locations from high resolution aerial imagery by applying an object-based image analysis (OBIA) approach utilizing eCognition. This process was accomplished through a set of algorithms and image filters, which segment and classify image objects by their spectral and geometric characteristics. The algorithms utilized were based on the relative location of image objects and pixels, in order to maximize the robustness and transferability of the final rule-set. These algorithms were coupled with convolution and histogram image filters to generate results for a 10km2 study area located within Clay Township in Ottawa County, Ohio. The eCognition results were compared to previously collected tile locations from an associated project that applied heads-up digitizing of aerial photography to map field tile. The heads-up digitized locations were used as a baseline for the accuracy assessment. The accuracy assessment generated a range of agreement values from 67.20% - 71.20%, and an average

  7. Contributions of systematic tile drainage to watershed-scale phosphorus transport.

    PubMed

    King, Kevin W; Williams, Mark R; Fausey, Norman R

    2015-03-01

    Phosphorus (P) transport from agricultural fields continues to be a focal point for addressing harmful algal blooms and nuisance algae in freshwater systems throughout the world. In humid, poorly drained regions, attention has turned to P delivery through subsurface tile drainage. However, research on the contributions of tile drainage to watershed-scale P losses is limited. The objective of this study was to evaluate long-term P movement through tile drainage and its manifestation at the watershed outlet. Discharge data and associated P concentrations were collected for 8 yr (2005-2012) from six tile drains and from the watershed outlet of a headwater watershed within the Upper Big Walnut Creek watershed in central Ohio. Results showed that tile drainage accounted for 47% of the discharge, 48% of the dissolved P, and 40% of the total P exported from the watershed. Average annual total P loss from the watershed was 0.98 kg ha, and annual total P loss from the six tile drains was 0.48 kg ha. Phosphorus loads in tile and watershed discharge tended to be greater in the winter, spring, and fall, whereas P concentrations were greatest in the summer. Over the 8-yr study, P transported in tile drains represented <2% of typical application rates in this watershed, but >90% of all measured concentrations exceeded recommended levels (0.03 mg L) for minimizing harmful algal blooms and nuisance algae. Thus, the results of this study show that in systematically tile-drained headwater watersheds, the amount of P delivered to surface waters via tile drains cannot be dismissed. Given the amount of P loss relative to typical application rates, development and implementation of best management practices (BMPs) must jointly consider economic and environmental benefits. Specifically, implementation of BMPs should focus on late fall, winter, and early spring seasons when most P loading occurs.

  8. Tile Drainage Management Influences on Surface-Water and Groundwater Quality following Liquid Manure Application.

    PubMed

    Frey, Steven K; Topp, Ed; Ball, Bonnie R; Edwards, Mark; Gottschall, Natalie; Sunohara, Mark; Zoski, Erin; Lapen, David R

    2013-01-01

    This study investigated the potential for controlled tile drainage (CD) to reduce bacteria and nutrient loading to surface water and groundwater from fall-season liquid manure application (LMA) on four macroporous clay loam plots, of which two had CD and two had free-draining (FD) tiles. Rhodamine WT (RWT) was mixed into the manure and monitored in the tile water and groundwater following LMA. Tile water and groundwater quality were influenced by drainage management. Following LMA on the FD plots, RWT, nutrients, and bacteria moved rapidly via tiles to surface water; at the CD plots, tiles did not flow until the first post-LMA rainfall, so the immediate risk of LMA-induced contamination of surface water was abated. During the 36-d monitoring period, flow-weighted average specific conductance, redox potential, and turbidity, as well as total Kjeldahl N (TKN), total P (TP), NH-N, reactive P, and RWT concentrations, were higher in the CD tile effluent; however, because of lower tile discharge from the CD plots, there was no significant ( ≤ 0.05) difference in surface water nutrient and RWT loading between the CD and FD plots when all tiles were flowing. The TKN, TP, and RWT concentrations in groundwater also tended to be higher at the CD plots. Bacteria behaved differently than nutrients and RWT, with no significant difference in total coliform, , fecal coliform, fecal streptococcus, and concentrations between the CD and FD tile effluent; however, for all but , hourly loading was higher from the FD plots. Results indicate that CD has potential for mitigating bacteria movement to surface water.

  9. Nitrate and Pesticide Transport From Tile-Drained Fields in the Willamette Valley, Oregon

    NASA Astrophysics Data System (ADS)

    Warren, K. L.; Rupp, D. E.; Selker, J. S.; Dragila, M. I.; Peachey, R. E.

    2002-12-01

    Tile drainage affects the hydrology and thus the solute transport on agricultural fields by increasing the volume of water that drains from the subsurface. Previous NAWQA studies have shown elevated nitrate levels in wells and high detection frequencies for selected pesticides in Willamette Valley streams. As a substantial area of Willamette Valley agricultural land is tile-drained, it is important to determine the role of tile drains in surface water and ground water pollution. Four fields in the Willamette Valley were instrumented to monitor tile effluent for two winter seasons. On two fields, surface runoff was also monitored for the second season. Field areas ranged from 3 to 30 acres and were cropped in grass, corn, or a grass/corn rotation. Tile effluent nitrate concentrations frequently exceeded 10 ppm on some fields. Flow-weighted averages for each field were 0.87 ppm and 1.36 ppm for two established grass fields, and 8.1 ppm and 14.4 ppm for grass fields that had recently grown corn. Mass losses ranged from 1.15%-6.45% of the applied nitrate through the tile drains. Diuron, Metolachlor, and Chlorpyrifos were tested in selected surface runoff and tile effluent samples. On one field, Metolachlor concentrations were similar in the tile drains and surface runoff. Concentrations in both sources were 10 times lower than the drinking water advisory for Metolachlor. In a second field, Chlorpyrifos concentrations were two orders of magnitude lower than drinking water advisories in both sources. On the same field, Diuron concentrations were significantly higher in the surface runoff than in the tile effluent. Diuron concentrations were 1-2 orders of magnitude higher during the first precipitation events after application in the surface runoff. On a third field, Diuron was at least 10 times lower than drinking water advisories in the tile effluent, with the highest concentrations found in samples collected within 21 days of pesticide application.

  10. Contributions of systematic tile drainage to watershed-scale phosphorus transport.

    PubMed

    King, Kevin W; Williams, Mark R; Fausey, Norman R

    2015-03-01

    Phosphorus (P) transport from agricultural fields continues to be a focal point for addressing harmful algal blooms and nuisance algae in freshwater systems throughout the world. In humid, poorly drained regions, attention has turned to P delivery through subsurface tile drainage. However, research on the contributions of tile drainage to watershed-scale P losses is limited. The objective of this study was to evaluate long-term P movement through tile drainage and its manifestation at the watershed outlet. Discharge data and associated P concentrations were collected for 8 yr (2005-2012) from six tile drains and from the watershed outlet of a headwater watershed within the Upper Big Walnut Creek watershed in central Ohio. Results showed that tile drainage accounted for 47% of the discharge, 48% of the dissolved P, and 40% of the total P exported from the watershed. Average annual total P loss from the watershed was 0.98 kg ha, and annual total P loss from the six tile drains was 0.48 kg ha. Phosphorus loads in tile and watershed discharge tended to be greater in the winter, spring, and fall, whereas P concentrations were greatest in the summer. Over the 8-yr study, P transported in tile drains represented <2% of typical application rates in this watershed, but >90% of all measured concentrations exceeded recommended levels (0.03 mg L) for minimizing harmful algal blooms and nuisance algae. Thus, the results of this study show that in systematically tile-drained headwater watersheds, the amount of P delivered to surface waters via tile drains cannot be dismissed. Given the amount of P loss relative to typical application rates, development and implementation of best management practices (BMPs) must jointly consider economic and environmental benefits. Specifically, implementation of BMPs should focus on late fall, winter, and early spring seasons when most P loading occurs. PMID:26023967

  11. Molecular Dissection Using Array Comparative Genomic Hybridization and Clinical Evaluation of An Infertile Male Carrier of An Unbalanced Y;21 Translocation: A Case Report and Review of The Literature.

    PubMed

    Orrico, Alfredo; Marseglia, Giuseppina; Pescucci, Chiara; Cortesi, Ambra; Piomboni, Paola; Giansanti, Andrea; Gerundino, Francesca; Ponchietti, Roberto

    2016-01-01

    Chromosomal defects are relatively frequent in infertile men however, translocations between the Y chromosome and autosomes are rare and less than 40 cases of Y-autosome translocation have been reported. In particular, only three individuals has been described with a Y;21 translocation, up to now. We report on an additional case of an infertile man in whom a Y;21 translocation was associated with the deletion of a large part of the Y chromosome long arm. Applying various techniques, including conventional cytogenetic procedures, fluorescence in situ hybridisation (FISH) analysis and array comparative genomic hybridization (array-CGH) studies, we identified a derivative chromosome originating from a fragment of the short arm of the chromosome Y translocated on the short arm of the 21 chromosome. The Y chromosome structural rearrangement resulted in the intactness of the entire short arm, including the sex-determining region Y (SRY) and the short stature homeobox (SHOX) loci, although translocated on the 21 chromosome, and the loss of a large part of the long arm of the Y chromosome, including azoospermia factor-a (AZFa), AZFb, AZFc and Yq heterochromatin regions. This is the first case in which a (Yp;21p) translocation has been ascertained using an array-CGH approach, thus reporting details of such a rearrangement at higher resolution.

  12. Molecular Dissection Using Array Comparative Genomic Hybridization and Clinical Evaluation of An Infertile Male Carrier of An Unbalanced Y;21 Translocation: A Case Report and Review of The Literature.

    PubMed

    Orrico, Alfredo; Marseglia, Giuseppina; Pescucci, Chiara; Cortesi, Ambra; Piomboni, Paola; Giansanti, Andrea; Gerundino, Francesca; Ponchietti, Roberto

    2016-01-01

    Chromosomal defects are relatively frequent in infertile men however, translocations between the Y chromosome and autosomes are rare and less than 40 cases of Y-autosome translocation have been reported. In particular, only three individuals has been described with a Y;21 translocation, up to now. We report on an additional case of an infertile man in whom a Y;21 translocation was associated with the deletion of a large part of the Y chromosome long arm. Applying various techniques, including conventional cytogenetic procedures, fluorescence in situ hybridisation (FISH) analysis and array comparative genomic hybridization (array-CGH) studies, we identified a derivative chromosome originating from a fragment of the short arm of the chromosome Y translocated on the short arm of the 21 chromosome. The Y chromosome structural rearrangement resulted in the intactness of the entire short arm, including the sex-determining region Y (SRY) and the short stature homeobox (SHOX) loci, although translocated on the 21 chromosome, and the loss of a large part of the long arm of the Y chromosome, including azoospermia factor-a (AZFa), AZFb, AZFc and Yq heterochromatin regions. This is the first case in which a (Yp;21p) translocation has been ascertained using an array-CGH approach, thus reporting details of such a rearrangement at higher resolution. PMID:26985348

  13. Molecular Dissection Using Array Comparative Genomic Hybridization and Clinical Evaluation of An Infertile Male Carrier of An Unbalanced Y;21 Translocation: A Case Report and Review of The Literature

    PubMed Central

    Orrico, Alfredo; Marseglia, Giuseppina; Pescucci, Chiara; Cortesi, Ambra; Piomboni, Paola; Giansanti, Andrea; Gerundino, Francesca; Ponchietti, Roberto

    2016-01-01

    Chromosomal defects are relatively frequent in infertile men however, translocations between the Y chromosome and autosomes are rare and less than 40 cases of Y-autosome translocation have been reported. In particular, only three individuals has been described with a Y;21 translocation, up to now. We report on an additional case of an infertile man in whom a Y;21 translocation was associated with the deletion of a large part of the Y chromosome long arm. Applying various techniques, including conventional cytogenetic procedures, fluorescence in situ hybridisation (FISH) analysis and array comparative genomic hybridization (array-CGH) studies, we identified a derivative chromosome originating from a fragment of the short arm of the chromosome Y translocated on the short arm of the 21 chromosome. The Y chromosome structural rearrangement resulted in the intactness of the entire short arm, including the sex-determining region Y (SRY) and the short stature homeobox (SHOX) loci, although translocated on the 21 chromosome, and the loss of a large part of the long arm of the Y chromosome, including azoospermia factor-a (AZFa), AZFb, AZFc and Yq heterochromatin regions. This is the first case in which a (Yp;21p) translocation has been ascertained using an array-CGH approach, thus reporting details of such a rearrangement at higher resolution. PMID:26985348

  14. Global Arrays

    2006-02-23

    The Global Arrays (GA) toolkit provides an efficient and portable “shared-memory” programming interface for distributed-memory computers. Each process in a MIMD parallel program can asynchronously access logical blocks of physically distributed dense multi-dimensional arrays, without need for explicit cooperation by other processes. Unlike other shared-memory environments, the GA model exposes to the programmer the non-uniform memory access (NUMA) characteristics of the high performance computers and acknowledges that access to a remote portion of the sharedmore » data is slower than to the local portion. The locality information for the shared data is available, and a direct access to the local portions of shared data is provided. Global Arrays have been designed to complement rather than substitute for the message-passing programming model. The programmer is free to use both the shared-memory and message-passing paradigms in the same program, and to take advantage of existing message-passing software libraries. Global Arrays are compatible with the Message Passing Interface (MPI).« less

  15. Pacific Array

    NASA Astrophysics Data System (ADS)

    Kawakatsu, H.; Takeo, A.; Isse, T.; Nishida, K.; Shiobara, H.; Suetsugu, D.

    2014-12-01

    Based on our recent results on broadband ocean bottom seismometry, we propose a next generation large-scale array experiment in the ocean. Recent advances in ocean bottom broadband seismometry (e.g., Suetsugu & Shiobara, 2014, Annual Review EPS), together with advances in the seismic analysis methodology, have now enabled us to resolve the regional 1-D structure of the entire lithosphere/asthenosphere system, including seismic anisotropy (both radial and azimuthal), with deployments of ~10-15 broadband ocean bottom seismometers (BBOBSs) (namely "ocean-bottom broadband dispersion survey"; Takeo et al., 2013, JGR; Kawakatsu et al., 2013, AGU; Takeo, 2014, Ph.D. Thesis; Takeo et al., 2014, JpGU). Having ~15 BBOBSs as an array unit for 2-year deployment, and repeating such deployments in a leap-frog way (an array of arrays) for a decade or so would enable us to cover a large portion of the Pacific basin. Such efforts, not only by giving regional constraints on the 1-D structure, but also by sharing waveform data for global scale waveform tomography, would drastically increase our knowledge of how plate tectonics works on this planet, as well as how it worked for the past 150 million years. International collaborations might be sought.

  16. On analytic design of loudspeaker arrays with uniform radiation characteristics

    PubMed

    Aarts; Janssen

    2000-01-01

    Some notes on analytical derived loudspeaker arrays with uniform radiation characteristics are presented. The array coefficients are derived via analytical means and compared with so-called maximal flat sequences known from telecommunications and information theory. It appears that the newly derived array, i.e., the quadratic phase array, has a higher efficiency than the Bessel array and a flatter response than the Barker array. The method discussed admits generalization to the design of arrays with desired nonuniform radiating characteristics.

  17. Hydrologic Impacts of Tile Drainage in Iowa: From Field to Catchment Scale

    NASA Astrophysics Data System (ADS)

    Sloan, B.; Basu, N. B.; Mantilla, R.

    2013-12-01

    Agricultural tile drainage is an integral part of Iowa's landscape, with nearly 30% of Iowa's cropland being drained (Schilling & Helmers, 2008). Tile drainage allows for efficient crop production in Iowa's nutrient rich soils by removing excess water from frequently inundated fields through subsurface pipe networks. These tile systems are suspected of altering the hydrologic regime of Iowa, but the extent of the problem remains unknown. Current research has concluded that the impacts of tile drainage on the hydrologic response entail a complex interaction of processes that is dependent upon landscape, climatic, and anthropogenic controls and that the effects of tile drainage vary with watershed scale. The deterministic field-scale model DRAINMOD is used in both a field and catchment scale analysis of the hydrologic impacts of tile drainage in conditions typical to Iowa. The field scale results indicate that soil permeability and rainfall event size are essential in determining the impact of tile drainage. The addition of drainage can decrease flows in less permeable soils and increase flows in more permeable soils because of the alteration to dominant pre-drainage flow mechanisms. However, for very large storm events, the tile has little impact because surface runoff dominates. The field scale DRAINMOD results are then used in conjunction with a simplified routing equation to analyze the impact of tile drains on the Clear Creek Watershed (CCW) in Iowa. According to the results, at the CCW scale (260 km2), tile drainage can reduce the peak flows at the outlet for certain storm events. It was found that adding drained fields to the densest portion of the CCW width function can decrease the peak at the outlet. However, for very large storm events, tiling may have no impact on the outlet hydrograph since all fields will have a similar hydrograph due to the similar surface runoff mechanism. According to the results, tile drainage is capable of reducing peak flows and

  18. A Framework for the Comparative Assessment of Neuronal Spike Sorting Algorithms towards More Accurate Off-Line and On-Line Microelectrode Arrays Data Analysis.

    PubMed

    Regalia, Giulia; Coelli, Stefania; Biffi, Emilia; Ferrigno, Giancarlo; Pedrocchi, Alessandra

    2016-01-01

    Neuronal spike sorting algorithms are designed to retrieve neuronal network activity on a single-cell level from extracellular multiunit recordings with Microelectrode Arrays (MEAs). In typical analysis of MEA data, one spike sorting algorithm is applied indiscriminately to all electrode signals. However, this approach neglects the dependency of algorithms' performances on the neuronal signals properties at each channel, which require data-centric methods. Moreover, sorting is commonly performed off-line, which is time and memory consuming and prevents researchers from having an immediate glance at ongoing experiments. The aim of this work is to provide a versatile framework to support the evaluation and comparison of different spike classification algorithms suitable for both off-line and on-line analysis. We incorporated different spike sorting "building blocks" into a Matlab-based software, including 4 feature extraction methods, 3 feature clustering methods, and 1 template matching classifier. The framework was validated by applying different algorithms on simulated and real signals from neuronal cultures coupled to MEAs. Moreover, the system has been proven effective in running on-line analysis on a standard desktop computer, after the selection of the most suitable sorting methods. This work provides a useful and versatile instrument for a supported comparison of different options for spike sorting towards more accurate off-line and on-line MEA data analysis. PMID:27239191

  19. A Framework for the Comparative Assessment of Neuronal Spike Sorting Algorithms towards More Accurate Off-Line and On-Line Microelectrode Arrays Data Analysis

    PubMed Central

    Pedrocchi, Alessandra

    2016-01-01

    Neuronal spike sorting algorithms are designed to retrieve neuronal network activity on a single-cell level from extracellular multiunit recordings with Microelectrode Arrays (MEAs). In typical analysis of MEA data, one spike sorting algorithm is applied indiscriminately to all electrode signals. However, this approach neglects the dependency of algorithms' performances on the neuronal signals properties at each channel, which require data-centric methods. Moreover, sorting is commonly performed off-line, which is time and memory consuming and prevents researchers from having an immediate glance at ongoing experiments. The aim of this work is to provide a versatile framework to support the evaluation and comparison of different spike classification algorithms suitable for both off-line and on-line analysis. We incorporated different spike sorting “building blocks” into a Matlab-based software, including 4 feature extraction methods, 3 feature clustering methods, and 1 template matching classifier. The framework was validated by applying different algorithms on simulated and real signals from neuronal cultures coupled to MEAs. Moreover, the system has been proven effective in running on-line analysis on a standard desktop computer, after the selection of the most suitable sorting methods. This work provides a useful and versatile instrument for a supported comparison of different options for spike sorting towards more accurate off-line and on-line MEA data analysis. PMID:27239191

  20. The Tile and General Research Imaging System (TIGRIS)

    SciTech Connect

    Simpson, J.J.; Al-Rawi, L.L.

    1996-01-01

    The Tile and General Research Imaging System (TIGRIS) is a UNIX-based image software system implemented in, and strictly conforming to, UNIX, C/ANSI C, and X11 Window standards. The TIGRIS design and implementation emulates UNIX at the user, application, and system levels. The TIGRIS Application Programmer Interface (API) provides a convenient way to create divers image processing and analysis applications. TIGRIS has been used primarily to support satellite remote sensing, global change research, and operational activities. Numerous applications related to specific remote sensing issues (e.g., cloud detection, noise reduction in AVHRR Channel 3 data, oceanic transport) are included in the application layer. In addition, a number of powerful general purpose imaging applications (e.g., image algebra, morphological operations, textural analysis) are provided which support general image processing, analysis, interactive visualization, and noninteractive image product generation. Use of TIGRIS to accomplish a few complex image analysis tasks is demonstrated.