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Sample records for complete variable loop

  1. Orion Suit Loop Variable Pressure Regulator Development

    NASA Technical Reports Server (NTRS)

    Mosher, Michael; Lewis, John F.; Campbell, Melissa

    2012-01-01

    The Orion Multi Purpose Crew Vehicle (MPCV) integrates the cabin and pressure suits with the core life support systems to provide life support during contingency depressurized cabin operations. To provide the multiple suit pressures between nominal pressurized cabin suited operations, suit leak checks, depressurized cabin suited operations, and elevated suit pressure for denitrification, a variable pressure regulator is needed. This paper documents the development of the suit loop regulator for Orion.

  2. Orion Suit Loop Variable Pressure Regulator Development

    NASA Technical Reports Server (NTRS)

    Mosher, Michael; Vassallo, Andrew; Lewis, John F.; Campbell, Melissa

    2014-01-01

    The Orion Multi Purpose Crew Vehicle (MPCV) integrates the cabin and pressure suits with the core life support systems to provide life support during contingency depressurized cabin operations. To provide the multipule suit pressures between nominal pressurized cabin suited operations, suit leak checks, depressurized cabin suited operations, and elevated suit pressure for denitrification, a variable pressure regulator is needed. This paper documents the development and integrated testing of the suit loop regulator for Orion.

  3. Complete maps of molecular-loop conformational spaces.

    PubMed

    Porta, Josep M; Ros, Lluís; Thomas, Federico; Corcho, Francesc; Cantó, Josep; Pérez, Juan Jesús

    2007-10-01

    This paper presents a numerical method to compute all possible conformations of distance-constrained molecular loops, i.e., loops where some interatomic distances are held fixed, while others can vary. The method is general (it can be applied to single or multiple intermingled loops of arbitrary topology) and complete (it isolates all solutions, even if they form positive-dimensional sets). Generality is achieved by reducing the problem to finding all embeddings of a set of points constrained by pairwise distances, which can be formulated as computing the roots of a system of Cayley-Menger determinants. Completeness is achieved by expressing these determinants in Bernstein form and using a numerical algorithm that exploits such form to bound all root locations at any desired precision. The method is readily parallelizable, and the current implementation can be run on single- or multiprocessor machines. Experiments are included that show the method's performance on rigid loops, mobile loops, and multiloop molecules. In all cases, complete maps including all possible conformations are obtained, thus allowing an exhaustive analysis and visualization of all pseudo-rotation paths between different conformations satisfying loop closure.

  4. Completely inverted hysteresis loops: Inhomogeneity effects or experimental artifacts

    SciTech Connect

    Song, C. Cui, B.; Pan, F.; Yu, H. Y.

    2013-11-14

    Completely inverted hysteresis loops (IHL) are obtained by the superconducting quantum interference device with large cooling fields (>10 kOe) in (La,Sr)MnO{sub 3} films with self-assembled LaSrMnO{sub 4}, an antiferromagnetic interface. Although the behaviours of measured loops show many features characteristic to the IHL, its origin, however, is not due to the exchange coupling between (La,Sr)MnO{sub 3}/LaSrMnO{sub 4}, an often accepted view on IHL. Instead, we demonstrate that the negative remanence arises from the hysteresis of superconducting coils, which drops abruptly when lower cooling fields are utilized. Hence the completely inverted hysteresis loops are experimental artifacts rather than previously proposed inhomogeneity effects in complicated materials.

  5. Loop quantum cosmology with complex Ashtekar variables

    NASA Astrophysics Data System (ADS)

    Ben Achour, Jibril; Grain, Julien; Noui, Karim

    2015-01-01

    We construct and study loop quantum cosmology (LQC) when the Barbero-Immirzi parameter takes the complex value γ =+/- i. We refer to this new approach to quantum cosmology as complex LQC. This formulation is obtained via an analytic continuation of the Hamiltonian constraint (with no inverse volume corrections) from real γ to γ =+/- i, in the simple case of a flat FLRW Universe coupled to a massless scalar field with no cosmological constant. For this, we first compute the non-local curvature operator (defined by the trace of the holonomy of the connection around a fundamental plaquette) evaluated in an arbitrary spin j representation, and find a new close formula for its expression. This allows us to define explicitly a one parameter family of regularizations of the Hamiltonian constraint in LQC, parametrized by the spin j. It is immediate to see that any spin j regularization leads to a bouncing scenario. Then, motivated in particular by previous results on black hole thermodynamics, we perform the analytic continuation of the Hamiltonian constraint to values of the Barbero-Immirzi parameter given by γ =+/- i and to spins j=\\frac{1}{2}(-1+is) where s is real. Even if the area spectrum then becomes continuous, we show that the complex LQC defined in this way does also replace the initial big-bang singularity by a big-bounce. In addition to this, the maximal density and the minimal volume of the Universe are obviously independent of γ . Furthermore, the dynamics before and after the bounce is not symmetrical anymore, which makes a clear distinction between these two phases of the evolution of the Universe.

  6. Complete algebraic reduction of one-loop tensor Feynman integrals

    SciTech Connect

    Fleischer, J.; Riemann, T.

    2011-04-01

    We set up a new, flexible approach for the tensor reduction of one-loop Feynman integrals. The 5-point tensor integrals up to rank R=5 are expressed by 4-point tensor integrals of rank R-1, such that the appearance of the inverse 5-point Gram determinant is avoided. The 4-point tensor coefficients are represented in terms of 4-point integrals, defined in d dimensions, 4-2{epsilon}{<=}d{<=}4-2{epsilon}+2(R-1), with higher powers of the propagators. They can be further reduced to expressions which stay free of the inverse 4-point Gram determinants but contain higher-dimensional 4-point integrals with only the first power of scalar propagators, plus 3-point tensor coefficients. A direct evaluation of the higher-dimensional 4-point functions would avoid the appearance of inverse powers of the Gram determinants completely. The simplest approach, however, is to apply here dimensional recurrence relations in order to reduce them to the familiar 2- to 4-point functions in generic dimension d=4-2{epsilon}, introducing thereby coefficients with inverse 4-point Gram determinants up to power R for tensors of rank R. For small or vanishing Gram determinants--where this reduction is not applicable--we use analytic expansions in positive powers of the Gram determinants. Improving the convergence of the expansions substantially with Pade approximants we close up to the evaluation of the 4-point tensor coefficients for larger Gram determinants. Finally, some relations are discussed which may be useful for analytic simplifications of Feynman diagrams.

  7. Loop quantum cosmology with self-dual variables

    NASA Astrophysics Data System (ADS)

    Wilson-Ewing, Edward

    2015-12-01

    Using the complex-valued self-dual connection variables, the loop quantum cosmology of a closed Friedmann space-time coupled to a massless scalar field is studied. It is shown how the reality conditions can be imposed in the quantum theory by choosing a particular inner product for the kinematical Hilbert space. While holonomies of the self-dual Ashtekar connection are not well defined in the kinematical Hilbert space, it is possible to introduce a family of generalized holonomylike operators of which some are well defined; these operators in turn are used in the definition of the Hamiltonian constraint operator where the scalar field can be used as a relational clock. The resulting quantum theory is closely related, although not identical, to standard loop quantum cosmology constructed from the Ashtekar-Barbero variables with a real Immirzi parameter. Effective Friedmann equations are derived which provide a good approximation to the full quantum dynamics for sharply peaked states whose volume remains much larger than the Planck volume, and they show that for these states quantum gravity effects resolve the big-bang and big-crunch singularities and replace them by a nonsingular bounce. Finally, the loop quantization in self-dual variables of a flat Friedmann space-time is recovered in the limit of zero spatial curvature and is identical to the standard loop quantization in terms of the real-valued Ashtekar-Barbero variables.

  8. Loops in Bandstrength-Color Diagrams for Mira Variables

    NASA Astrophysics Data System (ADS)

    Wing, R. P.

    Narrow-band photometry of Mira variables in the near-infrared (7000-11000 AA) spectral region allows the measurement of colors at relatively good continuum points as well as strong bands of TiO and VO. Several variables including o Cet, chi Cyg, R And, R Cas, R Tri, and IK Tau have been followed through two or more cycles; 27 stars were observed on 10 or more dates. In bandstrength-color diagrams, Mira variables execute large, open loops of varying character and complexity. Several of these are illustrated and discussed. Attempts to model these loops may shed light on the temperature structures of the outer layers of these stars' extended, dynamic atmospheres.

  9. Anisotropic loop quantum cosmology with self-dual variables

    NASA Astrophysics Data System (ADS)

    Wilson-Ewing, Edward

    2016-04-01

    A loop quantization of the diagonal class A Bianchi models starting from the complex-valued self-dual connection variables is presented in this paper. The basic operators in the quantum theory correspond to areas and generalized holonomies of the Ashtekar connection, and the reality conditions are implemented via the choice of the inner product on the kinematical Hilbert space. The action of the Hamiltonian constraint operator is given explicitly for the case when the matter content is a massless scalar field (in which case the scalar field can be used as a relational clock), and it is shown that the big bang and big crunch singularities are resolved in the sense that singular and nonsingular states decouple under the action of the Hamiltonian constraint operator.

  10. Long-term variability of a complete sample of quasars

    SciTech Connect

    Cristiani, S.; Vio, R.; Andreani, P. )

    1990-07-01

    The long-term variability of a complete sample of quasars selected in the field of the SA 94 has been investigated. Using Schmidt plates covering a time baseline of seven years, about one-third of the quasars are found to be variable. It is suggested that all the quasi-stellar objects are variable with amplitudes of a few tenths of a magnitude on timescales of the order of some years in their restframes. The application of the variability technique to the selection of complete samples of quasars is discussed. The timescales estimated can be easily accounted for in the accreting black hole with thermal and viscous timescales. The variability is found to be correlated with the absolute magnitude and/or the redshift. 21 refs.

  11. The Complete Four-Loop Four-Point Amplitude in N

    SciTech Connect

    Bern, Z.; Carrasco, J.J.M.; Dixon, Lance J.; Johansson, H.; Roiban, R.; /Penn State U.

    2010-08-25

    We present the complete four-loop four-point amplitude in N = 4 super-Yang-Mills theory, for a general gauge group and general D-dimensional covariant kinematics, and including all non-planar contributions. We use the method of maximal cuts - an efficient application of the unitarity method - to construct the result in terms of 50 four-loop integrals. We give graphical rules, valid in D-dimensions, for obtaining various non-planar contributions from previously-determined terms. We examine the ultraviolet behavior of the amplitude near D = 11/2. The non-planar terms are as well-behaved in the ultraviolet as the planar terms. However, in the color decomposition of the three- and four-loop amplitude for an SU(N{sub c}) gauge group, the coefficients of the double-trace terms are better behaved in the ultraviolet than are the single-trace terms. The results from this paper were an important step toward obtaining the corresponding amplitude in N = 8 supergravity, which confirmed the existence of cancellations beyond those needed for ultraviolet finiteness at four loops in four dimensions. Evaluation of the loop integrals near D = 4 would permit tests of recent conjectures and results concerning the infrared behavior of four-dimensional massless gauge theory.

  12. Black holes in loop quantum gravity: the complete space-time.

    PubMed

    Gambini, Rodolfo; Pullin, Jorge

    2008-10-17

    We consider the quantization of the complete extension of the Schwarzschild space-time using spherically symmetric loop quantum gravity. We find an exact solution corresponding to the semiclassical theory. The singularity is eliminated but the space-time still contains a horizon. Although the solution is known partially numerically and therefore a proper global analysis is not possible, a global structure akin to a singularity-free Reissner-Nordström space-time including a Cauchy horizon is suggested.

  13. Completely packed O (n ) loop models and their relation with exactly solved coloring models

    NASA Astrophysics Data System (ADS)

    Wang, Yougang; Guo, Wenan; Blöte, Henk W. J.

    2015-03-01

    We investigate the completely packed O (n ) loop model on the square lattice, and its generalization to an Eulerian graph model, which follows by including cubic vertices which connect the four incoming loop segments. This model includes crossing bonds as well. Our study was inspired by existing exact solutions of the so-called coloring model due to Schultz and Perk [Phys. Rev. Lett. 46, 629 (1981), 10.1103/PhysRevLett.46.629], which is shown to be equivalent with our generalized loop model. We explore the physical properties and the phase diagram of this model by means of transfer-matrix calculations and finite-size scaling. The exact results, which include seven one-dimensional branches in the parameter space of our generalized loop model, are compared to our numerical results. The results for the phase behavior also extend to parts of the parameter space beyond the exactly solved subspaces. One of the exactly solved branches describes the case of nonintersecting loops and was already known to correspond with the ordering transition of the Potts model. Another exactly solved branch, describing a model with nonintersecting loops and cubic vertices, corresponds with a first-order, Ising-like phase transition for n >2 . For 1 2 this branch is the locus of a first-order phase boundary between a phase with a hard-square, lattice-gas-like ordering and a phase dominated by cubic vertices. A mean-field argument explains the first-order nature of this transition.

  14. Variable-ratio schedules as variable-interval schedules with linear feedback loops.

    PubMed

    McDowell, J J; Wixted, J T

    1986-11-01

    The mathematical theory of linear systems has been used successfully to describe responding on variable-interval (VI) schedules. In the simplest extension of the theory to the variable-ratio (VR) case, VR schedules are treated as if they were VI schedules with linear feedback loops. The assumption entailed by this approach, namely, that VR and VI-plus-linear-feedback schedules are equivalent, was tested by comparing responding on the two types of schedule. Four human subjects' lever pressing produced monetary reinforcers on five VR schedules, and on five VI schedules with linear feedback loops that reproduced the feedback properties of the VR schedules. Pressing was initiated by instructions in 2 subjects, and was shaped by successive approximation in the other 2. The different methods of response initiation did not have differential effects on behavior. For each of the 4 subjects, the VR and the comparable VI-plus-linear-feedback schedules generated similar average response rates and similar response patterns. The subjects' behavior on both types of schedule was similar to that of avian and rodent species on VR schedules. These results indicate that the assumption entailed by the VI-plus-linear-feedback approach to the VR case is valid and, consequently, that the approach is worth pursuing. The results also confute interresponse-time theories of schedule performance, which require interval and ratio contingencies to produce different response rates.

  15. Complete one-loop electroweak corrections to ZZZ production at the ILC

    NASA Astrophysics Data System (ADS)

    Ji-Juan, Su; Wen-Gan, Ma; Ren-You, Zhang; Shao-Ming, Wang; Lei, Guo

    2008-07-01

    We study the complete O(αew) electroweak (EW) corrections to the production of three Z0 bosons in the framework of the standard model (SM) at the ILC. The leading-order and the EW next-to-leading-order corrected cross sections are presented, and their dependence on the colliding energy s and Higgs-boson mass mH is analyzed. We investigate also the LO and one-loop EW corrected distributions of the transverse momentum of the final Z0 boson, and the invariant mass of the Z0Z0 pair. Our numerical results show that the EW one-loop correction generally suppresses the tree-level cross section, and the relative correction with mH=120GeV(150GeV) varies between -15.8%(-13.9%) and -7.5%(-6.2%) when s goes up from 350 GeV to 1 TeV.

  16. Effect of Interaction between Chromatin Loops on Cell-to-Cell Variability in Gene Expression

    PubMed Central

    Zhou, Tianshou

    2016-01-01

    According to recent experimental evidence, the interaction between chromatin loops, which can be characterized by three factors—connection pattern, distance between regulatory elements, and communication form, play an important role in determining the level of cell-to-cell variability in gene expression. These quantitative experiments call for a corresponding modeling effect that addresses the question of how changes in these factors affect variability at the expression level in a systematic rather than case-by-case fashion. Here we make such an effort, based on a mechanic model that maps three fundamental patterns for two interacting DNA loops into a 4–state model of stochastic transcription. We first show that in contrast to side-by-side loops, nested loops enhance mRNA expression and reduce expression noise whereas alternating loops have just opposite effects. Then, we compare effects of facilitated tracking and direct looping on gene expression. We find that the former performs better than the latter in controlling mean expression and in tuning expression noise, but this control or tuning is distance–dependent, remarkable for moderate loop lengths, and there is a limit loop length such that the difference in effect between two communication forms almost disappears. Our analysis and results justify the facilitated chromatin–looping hypothesis. PMID:27153118

  17. Analysis of variable sites between two complete South China tiger (Panthera tigris amoyensis) mitochondrial genomes.

    PubMed

    Zhang, Wenping; Yue, Bisong; Wang, Xiaofang; Zhang, Xiuyue; Xie, Zhong; Liu, Nonglin; Fu, Wenyuan; Yuan, Yaohua; Chen, Daqing; Fu, Danghua; Zhao, Bo; Yin, Yuzhong; Yan, Xiahui; Wang, Xinjing; Zhang, Rongying; Liu, Jie; Li, Maoping; Tang, Yao; Hou, Rong; Zhang, Zhihe

    2011-10-01

    In order to investigate the mitochondrial genome of Panthera tigris amoyensis, two South China tigers (P25 and P27) were analyzed following 15 cymt-specific primer sets. The entire mtDNA sequence was found to be 16,957 bp and 17,001 bp long for P25 and P27 respectively, and this difference in length between P25 and P27 occurred in the number of tandem repeats in the RS-3 segment of the control region. The structural characteristics of complete P. t. amoyensis mitochondrial genomes were also highly similar to those of P. uncia. Additionally, the rate of point mutation was only 0.3% and a total of 59 variable sites between P25 and P27 were found. Out of the 59 variable sites, 6 were located in 6 different tRNA genes, 6 in the 2 rRNA genes, 7 in non-coding regions (one located between tRNA-Asn and tRNA-Tyr and six in the D-loop), and 40 in 10 protein-coding genes. COI held the largest amount of variable sites (9 sites) and Cytb contained the highest variable rate (0.7%) in the complete sequences. Moreover, out of the 40 variable sites located in 10 protein-coding genes, 12 sites were nonsynonymous.

  18. Advanced Photovoltaic Inverter Functionality using 500 kW Power Hardware-in-Loop Complete System Laboratory Testing: Preprint

    SciTech Connect

    Mather, B. A.; Kromer, M. A.; Casey, L.

    2013-01-01

    With the increasing penetration of distribution connected photovoltaic (PV) systems, more and more PV developers and utilities are interested in easing future PV interconnection concerns by mitigating some of the impacts of PV integration using advanced PV inverter controls and functions. This paper describes the testing of a 500 kW PV inverter using Power Hardware-in-Loop (PHIL) testing techniques. The test setup is described and the results from testing the inverter in advanced functionality modes, not commonly used in currently interconnected PV systems, are presented. PV inverter operation under PHIL evaluation that emulated both the DC PV array connection and the AC distribution level grid connection are shown for constant power factor (PF) and constant reactive power (VAr) control modes. The evaluation of these modes was completed under varying degrees of modeled PV variability.

  19. Complete spectrum of long operators in Script N = 4 SYM at one loop

    NASA Astrophysics Data System (ADS)

    Beisert, Niklas; Kazakov, Vladimir A.; Sakai, Kazuhiro; Zarembo, Konstantin

    2005-07-01

    We construct the complete spectral curve for an arbitrary local operator, including fermions and covariant derivatives, of one-loop Script N = 4 gauge theory in the thermodynamic limit. This curve perfectly reproduces the Frolov-Tseytlin limit of the full spectral curve of classical strings on AdS5 × S5 derived in [64]. To complete the comparison we introduce stacks, novel bound states of roots of different flavors which arise in the thermodynamic limit of the corresponding Bethe ansatz equations. We furthermore show the equivalence of various types of Bethe equations for the underlying fraktur sfraktur u(2,2|4) superalgebra, in particular of the type ``Beauty'' and ``Beast''.

  20. An embedding of loop quantum cosmology in (b,v) variables into a full theory context

    NASA Astrophysics Data System (ADS)

    Bodendorfer, N.

    2016-06-01

    Loop quantum cosmology in (b, v) variables, which is governed by a unit step size difference equation, is embedded into a full theory context based on similar variables. A full theory context here means a theory of quantum gravity arrived at using the quantisation techniques used in loop quantum gravity, however based on a different choice of elementary variables and classical gauge fixing suggested by loop quantum cosmology. From the full theory perspective, the symmetry reduction is characterised by the vanishing of certain phase space functions which are implemented as operator equations in the quantum theory. The loop quantum cosmology dynamics arise as the action of the full theory Hamiltonian on maximally coarse states in the kernel of the reduction constraints. An application of this reduction procedure to spherical symmetry is also sketched, with similar results, but only one canonical pair in (b, v) form.

  1. Loop Heat Pipe with Thermal Control Valve as a Variable Thermal Link

    NASA Technical Reports Server (NTRS)

    Hartenstine, John; Anderson, William G.; Walker, Kara; Dussinger, Pete

    2012-01-01

    Future lunar landers and rovers will require variable thermal links that allow for heat rejection during the lunar daytime and passively prevent heat rejection during the lunar night. During the lunar day, the thermal management system must reject the waste heat from the electronics and batteries to maintain them below the maximum acceptable temperature. During the lunar night, the heat rejection system must either be shut down or significant amounts of guard heat must be added to keep the electronics and batteries above the minimum acceptable temperature. Since guard heater power is unfavorable because it adds to system size and complexity, a variable thermal link is preferred to limit heat removal from the electronics and batteries during the long lunar night. Conventional loop heat pipes (LHPs) can provide the required variable thermal conductance, but they still consume electrical power to shut down the heat transfer. This innovation adds a thermal control valve (TCV) and a bypass line to a conventional LHP that proportionally allows vapor to flow back into the compensation chamber of the LHP. The addition of this valve can achieve completely passive thermal control of the LHP, eliminating the need for guard heaters and complex controls.

  2. Robust closed-loop control of propofol administration using WAVCNS index as the controlled variable.

    PubMed

    Hahn, Jin-Oh; Dumont, Guy A; Ansermino, J

    2010-01-01

    This paper presents a robust closed-loop strategy for control of depth of hypnosis. The proposed method regulates the electroencephalogram (EEG)-derived WAVCNS index as a hypnosis measure by manipulating intravenous propofol administration. In contrast to many existing closed-loop methods, the control design presented in this paper produces stability and robustness against uncertainty by explicitly accounting for the pharmacokinetic (PK) and pharmacodynamic (PD) variability between different individuals, as well as unpredictable surgical stimuli that the closed-loop control is required to tolerate. This closed-loop control was evaluated using simulated surgical procedures in 44 patient models whose PK and PD were identified from real clinical data. The controller can deliver consistent and acceptable closed-loop induction and maintenance phase responses for patients with wide-ranging PK and PD differences. PMID:21097118

  3. Effect of Variable Emittance Coatings on the Operation of a Miniature Loop Heat Pipe

    NASA Technical Reports Server (NTRS)

    Douglas, Donya M.; Ku, Jentung; Ottenstein, Laura; Swanson, Theodore; Hess, Steve; Darrin, Ann

    2005-01-01

    Abstract. As the size of spacecraft shrink to accommodate small and more efficient instruments, smaller launch vehicles, and constellation missions, all subsystems must also be made smaller. Under NASA NFL4 03-OSS-02, Space Technology-8 (ST 8), NASA Goddard Space Flight Center and Jet Propulsion Laboratory jointly conducted a Concept Definition study to develop a miniature loop heat pipe (MLHP) thermal management system design suitable for future small spacecraft. The proposed MLHP thermal management system consists of a miniature loop heat pipe (LHP) and deployable radiators that are coated with variable emittance coatings (VECs). As part of the Phase A study and proof of the design concept, variable emittance coatings were integrated with a breadboard miniature loop heat pipe. The miniature loop heat pipe was supplied by the Jet Propulsion Laboratory (PL), while the variable emittance technology were supplied by Johns Hopkins University Applied Physics Laboratory and Sensortex, Inc. The entire system was tested under vacuum at various temperature extremes and power loads. This paper summarizes the results of this testing and shows the effect of the VEC on the operation of a miniature loop heat pipe.

  4. Variable-Length Message Transmission for Distributed Loop Computer Networks (Part I).

    ERIC Educational Resources Information Center

    Reames, C. C.; Liu, M. T.

    An introduction to the problems of variable-length message transmission in distributed loop computer networks, with a summary of previous accomplishments in the area, begins this technically-oriented document. An improved technique, overcoming some of the inadequacies in presently used techniques, is proposed together with a conceptual model of…

  5. Typing and surface charges of the variable loop regions of PorB from Neisseria meningitidis.

    PubMed

    Stefanelli, Paola; Neri, Arianna; Tanabe, Mikio; Fazio, Cecilia; Massari, Paola

    2016-06-01

    PorB is a pan-Neisserial major outer membrane protein with a trimeric β-barrel structure. Each monomer presents eight periplasmic turns and eight surface exposed loop regions with sequence variability. PorB induces activation of host cell responses via a TLR2-dependent mechanism likely mediated by electrostatic interactions between TLR2 and PorB surface exposed loops. Variability in the loop amino acid sequence is known to influence cell responses to PorB in vitro, particularly for the residues in L5 and L7. In this work, the sequence of the porB gene and the electrostatic surface charges of PorB from 35 invasive meningococcal isolates belonging to the main clonal complexes identified in Italy and from five carriage genomes available on the website http://pubmlst.org/neisseria/ were examined. Analysis of the porB encoding regions from the invasive meningococci has identified four new alleles and a potential association between porB alleles, serogroup, and clonal complexes. Through computer-based modeling and analysis of the electrostatic surface charges of PorB from these strains, loop charge segregation between PorB from invasive serogroups B and C was observed. Specifically, loops 1, 4, and 7 were negatively charged and L2 and L8 were mostly neutral in serogroup B isolates, while an overall homogeneous positive surface charge was present in PorB from invasive serogroup C strains. A higher PorB sequence variability was observed among carriage genomes, and a general prevalence of negative loop surface charges. The surface charge differences in PorB from serogroups B and C invasive and carriage strains may, in part, influence the outcomes of Neisseriae interactions with host cells. © 2016 IUBMB Life, 68(6):488-495, 2016. PMID:27156582

  6. Typing and surface charges of the variable loop regions of PorB from Neisseria meningitidis.

    PubMed

    Stefanelli, Paola; Neri, Arianna; Tanabe, Mikio; Fazio, Cecilia; Massari, Paola

    2016-06-01

    PorB is a pan-Neisserial major outer membrane protein with a trimeric β-barrel structure. Each monomer presents eight periplasmic turns and eight surface exposed loop regions with sequence variability. PorB induces activation of host cell responses via a TLR2-dependent mechanism likely mediated by electrostatic interactions between TLR2 and PorB surface exposed loops. Variability in the loop amino acid sequence is known to influence cell responses to PorB in vitro, particularly for the residues in L5 and L7. In this work, the sequence of the porB gene and the electrostatic surface charges of PorB from 35 invasive meningococcal isolates belonging to the main clonal complexes identified in Italy and from five carriage genomes available on the website http://pubmlst.org/neisseria/ were examined. Analysis of the porB encoding regions from the invasive meningococci has identified four new alleles and a potential association between porB alleles, serogroup, and clonal complexes. Through computer-based modeling and analysis of the electrostatic surface charges of PorB from these strains, loop charge segregation between PorB from invasive serogroups B and C was observed. Specifically, loops 1, 4, and 7 were negatively charged and L2 and L8 were mostly neutral in serogroup B isolates, while an overall homogeneous positive surface charge was present in PorB from invasive serogroup C strains. A higher PorB sequence variability was observed among carriage genomes, and a general prevalence of negative loop surface charges. The surface charge differences in PorB from serogroups B and C invasive and carriage strains may, in part, influence the outcomes of Neisseriae interactions with host cells. © 2016 IUBMB Life, 68(6):488-495, 2016.

  7. The investigation of genetic diversity and evolution of Daweishan Mini chicken based on the complete mitochondrial (mt)DNA D-loop region sequence.

    PubMed

    Jia, Xiao-Xu; Tang, Xiu-Jun; Lu, Jun-Xian; Fan, Yan-Feng; Chen, Da-Wei; Tang, Meng-Jun; Gu, Rong; Gao, Yu-Shi

    2016-07-01

    This study evaluated the genetic diversity and origin of Daweishan Mini chickens using mtDNA sequence polymorphism. Blood samples from 30 Daweishan Mini chickens were collected. The complete D-loop was PCR amplified, sequenced and compared with the DNA data of five Red Junglefowl (Gallus gallus) subspecies. Eighteen variable sites that defined six haplotypes were observed. The six haplotypes were clustered into four clades (A, B, D and E), of which clade A and B were dominant. Clades Aand B were clustered with G.g. spadiceus, indicating these two clades may have originated from this subspecies. These results show there is diversity in the middle of the mtDNA D-loop, and indicate there are multiple maternal origins for Daweishan Mini chickens. It appears that G.g. spadiceus contributed more to the evolution of the Daweishan Mini chickens breed than the other four subspecies tested here. PMID:26153755

  8. Electrical engineering and nontechnical design variables of multiple inductive loop systems for auditoriums.

    PubMed

    Alterovitz, Gil

    2004-01-01

    This research analyzed both engineering and nontechnical issues involved in the use of Induction Loop Amplification (ILA) devices in auditoriums or large gathering places for hard-of-hearing individuals. A variety of parameters need to be taken into account to determine an optimal shape/configuration for the ILA device. In many cases, an optimal configuration is different from those proposed for classroom use (Ross, 1969; Hodgson, 1986; Clevenger, 1992). Experimental results were obtained for a double-loop configuration in such a setting (a university gymnasium/auditorium in this case). The results demonstrate that a double-loop configuration is a viable possibility for auditorium use. Several variables using this configuration were examined, and experimentation was done. Various implications, including consequent nontechnical issues specific to this application, are discussed as well. Technical and nontechnical aspects of the ILA configuration need to be examined together when designing an optimal system.

  9. An Almost Complete Radio Survey of Magnetic Cataclysmic Variables

    NASA Astrophysics Data System (ADS)

    Dieck, Christopher A.; Everett Barrett, Paul; Beasley, Anthony J.; Pal Singh, Kulinder; Boboltz, David A.; Godon, Patrick; Mason, Paul A.

    2016-01-01

    This poster presents the results of a radio survey using the Jansky Very Large Array (JVLA) of 129 Magnetic Cataclysmic Variables (MCVs) north of declination -35 deg. 103 hours of observations were performed during the JVLA observing sessions 2013B and 2015A, when the array was mostly in its highest spatial-resolution configurations (i.e., A and B). Most targets were observed twice for 2-5 minutes at each of three frequencies (C, X, and K-bands), although a few targets were also observed at a fourth frequency (Q-band). 22 of the 129 MCVS were detected at one or more frequencies. Of these 22 detections, 15 are new. This number nearly triples the number of MCVs that are known radio sources. Most detections are at the C and X-band frequencies, although three sources were detected at the K-band frequency. One of the K-band frequency detections is the known rapidly-rotating radio source AE Aqr, while the other two are the polars, AI Tri and ST LMi. Of the 22 detected sources, two-thirds are polars (15) and all are believed to be nearby (<200 pc). Except for a few stronger sources, most detections are in the range of 100-200 µJy, which at a distance of 150 pc corresponds roughly to a luminosity of 2x1024 erg/s at the X-band frequency. The results of this survey are encouraging in that more MCVs are likely to be detected as the time on-source increases, since the flux from MCVs is highly variable.

  10. Structural Conservation Predominates Over Sequence Variability in the Crown of HIV Type 1's V3 Loop

    PubMed Central

    Almond, David; Kimura, Tetsuya; Kong, XiangPeng; Swetnam, James; Zolla-Pazner, Susan

    2010-01-01

    Abstract The diversity of HIV-1 is a confounding problem for vaccine design, as the human immune response appears to favor poor or strain-specific responses to any given HIV-1 virus strain. A significant portion of this diversity is manifested as sequence variability in the loops of HIV-1's surface envelope glycoprotein. Here we show that the most variable sequence positions in the third variable (V3) loop crown cluster to a small zone on the surface of one face of the V3 loop ß-hairpin conformation. These results provide a novel visualization of the gp120 V3 loop, specifically demonstrating a surprising preponderance of conserved three-dimensional structure in a highly sequence-variable region. From a structural point of view, there appears to be less diversity in this region of the HIV-1 “principle neutralizing domain” than previously appreciated. PMID:20560796

  11. Visitor survey results for the Souris River Loop National Wildlife Refuges: Completion report

    USGS Publications Warehouse

    Sexton, Natalie R.; Koontz, Lynne; Stewart, Susan C.

    2005-01-01

    In support of the CCP planning effort for the Souris River Loop Refuges, the Policy Analysis and Science Assistance Branch/Fort Collins Science Center (PASA) of the U.S. Geological Survey conducted visitor surveys at three refuges in North Dakota: Des Lacs, J. Clark Salyer, and Upper Souris National Wildlife Refuges. This research was conducted in order to assess visitor experience, perceptions, and preferences and visitor spending related to recreation on these public lands. This baseline information and input is needed by the refuges to inform their CCP process. Specifically, this survey research assesses the characteristics of visitors and their trips, the activities in which visitors engage while on the refuge, details regarding their trip experience, as well as their preferences and attitudes about various management features, including existing and future conditions. 

  12. Completing the forward kinematic calibration of open loop manipulators when single point position sensors are used

    NASA Technical Reports Server (NTRS)

    Everett, Louis J.

    1989-01-01

    Single-point sensors can measure the position of one point fixed to a manipulator's end effector. When single-point sensors have been used for calibration, it has not been possible to calibrate the orientation of the tool. Furthermore, it can be difficult to calibrate the sensor system. Results in the literature seldom provide a complete kinematic calibration of the manipulator. Presented here is a technique that enables single-point sensors to gather sufficient information to complete kinematic calibration. In addition, the method can reduce the burden of calibrating the sensor system.

  13. Complete subsite mapping of a "loopful" GH19 chitinase from rye seeds based on its crystal structure.

    PubMed

    Ohnuma, Takayuki; Umemoto, Naoyuki; Kondo, Kaori; Numata, Tomoyuki; Fukamizo, Tamo

    2013-08-19

    Crystallographic analysis of a mutated form of "loopful" GH19 chitinase from rye seeds a double mutant RSC-c, in which Glu67 and Trp72 are mutated to glutamine and alanine, respectively, (RSC-c-E67Q/W72A) in complex with chitin tetrasaccharide (GlcNAc)₄ revealed that the entire substrate-binding cleft was completely occupied with the sugar residues of two (GlcNAc)₄ molecules. One (GlcNAc)₄ molecule bound to subsites -4 to -1, while the other bound to subsites +1 to +4. Comparisons of the main chain conformation between liganded RSC-c-E67Q/W72A and unliganded wild type RSC-c suggested domain motion essential for catalysis. This is the first report on the complete subsite mapping of GH19 chitinase.

  14. Testing of a Loop Heat Pipe Subjective to Variable Accelerations. Part 1; Start-up

    NASA Technical Reports Server (NTRS)

    Ku, Jentung; Rogers, Paul; Hoff, Craig

    2000-01-01

    The effect of accelerating forces on the performance of loop heat pipes (LHP) is of interest and importance to terrestrial and space applications. They are being considered for cooling of military combat vehicles and for spinning spacecraft. In order to investigate the effect of an accelerating force on LHP operation, a miniature LHP was installed on a spin table. Variable accelerating forces were imposed on the LHP by spinning the table at different angular speeds. Several patterns of accelerating forces were applied, i.e. continuous spin at different speeds and periodic spin at different speeds and frequencies. The resulting accelerations ranged from 1.17 g's to 4.7 g's. This paper presents the first part of the experimental study, i.e. the effects of a centrifugal force on the LHP start-up. Tests were conducted by varying the heat load to the evaporator, sink temperature, magnitude and frequency of centrifugal force, and LHP orientation relative to the direction of the accelerating force. The accelerating force seems to have little effect on the loop start-up in terms of temperature overshoot and superheat at boiling incipience. Changes in these parameters seem to be stochastic with or without centrifugal accelerating forces. The LHP started successfully in all tests.

  15. Temporal Variability of Interstellar Na I Absorption toward the Monoceros Loop

    NASA Astrophysics Data System (ADS)

    Dirks, Cody; Meyer, David M.

    2016-03-01

    We report the first evidence of temporal variability in the interstellar Na i absorption toward HD 47240, which lies behind the Monoceros Loop supernova remnant (SNR). Analysis of multi-epoch Kitt Peak coudé feed spectra from this sight line taken over an eight-year period reveals significant variation in both the observed column density and the central velocities of the high-velocity gas components in these spectra. Given the ˜1.3 mas yr-1 proper motion of HD 47240 and an SNR distance of 1.6 kpc, this variation would imply ˜10 au fluctuations within the SNR shell. Similar variations have been previously reported in the Vela SNR, suggesting a connection between the expanding SNR gas and the observed variations. We speculate on the potential nature of the observed variations toward HD 47240 in the context of the expanding remnant gas interacting with the ambient interstellar medium.

  16. Completion Rates and Accuracy of Performance Under Fixed and Variable Token Exchange Periods.

    ERIC Educational Resources Information Center

    McLaughlin, T. F.; Malaby, J. E.

    This research investigated the effects of employing fixed, variable, and extended token exchange periods for back-ups on the completion and accuracy of daily assignments for a total fifth and sixth-grade class. The results indicated that, in general, a higher percentage of assignments was completed when the number of days between point exchanges…

  17. Loop Current variability due to wind stress and reduced sea level during the Last Glacial Maximum

    NASA Astrophysics Data System (ADS)

    Mildner, T. C.; Eden, C.; Nuernberg, D.; Schoenfeld, J.

    2011-12-01

    One of the most prominent features of the circulation in the Gulf of Mexico is the Loop Current (LC). It is of special interest as it influences not only the climate in the Gulf of Mexico. Although causation is not well understood yet, dynamical relationships between LC retraction and extension, seasonal migrations of the Intertropical Convergence Zone (ITCZ) and the related wind stress curl over the subtropical North Atlantic, and changes in the thermohaline circulation are indicated by model simulations. A characteristic feature of the LC is the shedding of anticyclonic eddies. These eddies can have depth signatures of up to 1000 m and are of special interest as they supply heat and moisture into the western and northern Gulf. The eddies are generated aperiodically every 3 to 21 months, with an average shedding time of 9.5 months. Eddy shedding appears to be related to a suite of oceanographic forcing fields such as the Yucatan Channel throughflow, the Florida Current and North Brazil Current variability, as well as synoptic meteorological forcing variability. By combining state-of-the-art paleoceanographic and meso-scale eddy-resolving numerical modeling techniques, we examined the Loop Current dynamics and hydrographic changes in the Gulf going back in time up to ~21,000 years. To assess the impact of Last Glacial Maximum (LGM) wind stress and reduced sea level we have re-configured an existing hierarchy of models of the North Atlantic Ocean (FLAME) with a horizontal grid resolution of ca. 30 km (wind stress was taken from the PMIP-II database). The sea level was lowered compared to the CONTROL run by 110 m and 67 m. These sea level changes have been chosen according to the cold-deglacial periods Heinrich I and Younger Dryas. The result of our model simulations is a continuous increase in eddy shedding from the LGM to the Holocene. This increase is predominantly controlled by the continuous deglacial sea level rise. Changes in wind stress curl related to the

  18. Protein kinase–inhibitor database: Structural variability of and inhibitor interactions with the protein kinase P-loop

    PubMed Central

    Patel, Ronak Y.; Doerksen, Robert J.

    2011-01-01

    Structure based drug design of protein-kinase inhibitors has been facilitated by availability of an enormous number of structures in the Protein Databank (PDB), systematic analyses of which can provide insight into the factors which govern ligand–protein kinase interactions and into the conformational variability of the protein kinases. In this study, a non-redundant database containing 755 unique, curated and annotated PDB protein kinase–inhibitor complexes (each consisting of a single protein kinase chain, a ligand and water molecules around the ligand) was created. With this dataset, analyses were performed of protein conformational variability and interactions of ligands with 11 P-loop residues. Analysis of ligand–protein interactions included ligand atom preference, ligand–protein hydrogen bonds and the number and position of crystallographic water molecules around important P-loop residues. Analysis of variability in the conformation of the P-loop considered backbone and side-chain dihedral angles, and solvent accessible surface area (SASA). A distorted conformation of the P-loop was observed for some of the protein kinase structures. Lower SASA was observed for the hydrophobic residue in β1 of several members of the AGC family of protein kinases. Our systematic studies were performed amino-acid by amino-acid, which is unusual for analyses of protein kinase–inhibitor complexes. PMID:20681595

  19. Investigating Instrument-based Pragmatic Variability: Effects of Enhancing Discourse Completion Tasks.

    ERIC Educational Resources Information Center

    Billmyer, Kristine; Varghese, Manka

    2000-01-01

    Investigates the systematic modification to discourse completion test (DCT) situational prompts used to elicit requests on the responses of native and non-native speakers of English. Modification included enhancing the situational prompts by adding information on a number of social and contextual variables considered relevant to the study.…

  20. Student and Institutional Variables that Affect Time to Degree Completion of Community College Students

    ERIC Educational Resources Information Center

    Barrett, Iris Killian

    2012-01-01

    This research study investigated student and institutional variables associated with timely degree completion of the associate degree by community college students. Along with increased community college enrollments, time to degree has also increased. Three years (150% time or six semesters) currently stands as the community college standard for…

  1. Testing of a Loop Heat Pipe Subjective to Variable Accelerations. Part 2; Temperature Stability

    NASA Technical Reports Server (NTRS)

    Ku, Jentung; Ottenstein, Laura; Kaya, Taril; Rogers, Paul; Hoff, Craig

    2000-01-01

    The effect of accelerating forces on the performance of loop heat pipes (LHP) is of interest and importance to terrestrial and space applications. LHP's are being considered for cooling of military combat vehicles and for spinning spacecraft. In order to investigate the effect of an accelerating force on LHP operation, a miniature LHP was installed on a spin table. Variable accelerating forces were imposed on the LHP by spinning the table at different angular speeds. Several patterns of accelerating forces were applied, i.e. continuous spin at different speeds and periodic spin at different speeds and frequencies. The resulting accelerations ranged from 1.17 g's to 4.7 g's. This paper presents the second part of the experimental study, i.e. the effect of an accelerating force on the LHP operating temperature. It has been known that in stationary tests the LHP operating temperature is a function of the evaporator power and the condenser sink temperature when the compensation temperature is not actively controlled. Results of this test program indicate that any change in the accelerating force will result in a chance in the LHP operating temperature through its influence on the fluid distribution in the evaporator, condenser and compensation chamber. However, the effect is not universal, rather it is a function of other test conditions. A steady, constant acceleration may result in an increase or decrease of the operating temperature, while a periodic spin will lead to a quasi-steady operating temperature over a sufficient time interval. In addition, an accelerating force may lead to temperature hysteresis and changes in the temperature oscillation. In spite of all these effects, the LHP continued to operate without any problems in all tests.

  2. Electrical Engineering and Nontechnical Design Variables of Multiple Inductive Loop Systems for Auditoriums

    ERIC Educational Resources Information Center

    Alterovitz, Gil

    2004-01-01

    This research analyzed both engineering and nontechnical issues involved in the use of Induction Loop Amplification (ILA) devices in auditoriums or large gathering places for hard-of-hearing individuals. A variety of parameters need to be taken into account to determine an optimal shape/configuration for the ILA device. In many cases, an optimal…

  3. Comparison of the variable loop regions of myosin heavy chain genes from Antarctic and temperate isopods.

    PubMed

    Holmes, J M; Whiteley, N M; Magnay, J L; El Haj, A J

    2002-03-01

    The evolutionary adaptations of functional genes to life at low temperatures are not well characterised in marine and fresh water invertebrates. Temperature has been shown to affect the functional characteristics of fish muscles, with changes in the velocity of shortening and ATPase activity being associated with myosin heavy chain (MyHC) isoform composition and the structure of the surface loop regions. Two PCR products spanning loops 1 and 2 of a MyHC gene from an Antarctic isopod (Glyptonotus antarcticus) were sequenced and compared with those of a temperate isopod (Idotea resecata), slow and fast fibres from lobster (Homarus gammarus) and a cold water amphipod (Eulimnogammarus verrucosus), revealing specific differences between the species, possibly related to fibre type and habitat temperature. The loop 2 region from G. antarcticus myosin was cloned and used for Northern analysis of total RNA from the other species. The cloned myosin cDNA hybridised specifically to a 6.6-kb transcript, in G. antarcticus muscle. In contrast, cDNA probes for lobster slow myosin and actin hybridised to muscle RNA from all species, demonstrating that a distinct MyHC isoform is expressed in the Antarctic isopod, as opposed to the temperate species. The inter- and intra-specific sequence differences in loop 2 region suggest that this may be a site for muscle adaptation to enable function at the low temperatures found in the Southern Ocean. PMID:11959017

  4. Form factors and complete spectrum of XXX antiperiodic higher spin chains by quantum separation of variables

    SciTech Connect

    Niccoli, G.

    2013-05-15

    The antiperiodic transfer matrices associated to higher spin representations of the rational 6-vertex Yang-Baxter algebra are analyzed by generalizing the approach introduced recently in the framework of Sklyanin's quantum separation of variables (SOV) for cyclic representations, spin-1/2 highest weight representations, and also for spin-1/2 representations of the 6-vertex reflection algebra. Such SOV approach allow us to derive exactly results which represent complicate tasks for more traditional methods based on Bethe ansatz and Baxter Q-operator. In particular, we both prove the completeness of the SOV characterization of the transfer matrix spectrum and its simplicity. Then, the derived characterization of local operators by Sklyanin's quantum separate variables and the expression of the scalar products of separate states by determinant formulae allow us to compute the form factors of the local spin operators by one determinant formulae similar to those of the scalar products.

  5. Completeness properties of R × R and real valued functions of two variables under lexicographic order

    NASA Astrophysics Data System (ADS)

    Endang Cahya M., A.

    2016-02-01

    The order in R × R which is commonly used is a partial order. In this article is discussed a different concept of order which gives a total order/lexicographic order for R × R. With respect to this order, we define a new concept of inequalities, Archimedean property and completeness in R × R. We also define a concept of monotonicity of real function of several variables and a number of its basic properties. The results will give fundamental aspects to define different concepts of multivariable calculus.

  6. Vaccine Focusing to Cross-Subtype HIV-1 gp120 Variable Loop Epitopes

    PubMed Central

    Cardozo, Timothy; Wang, Shixia; Jiang, Xunqing; Kong, Xiang-Peng; Hioe, Catarina; Krachmarov, Chavdar

    2014-01-01

    We designed synthetic, epitope-focused immunogens that preferentially display individual neutralization epitopes targeted by cross-subtype anti-HIV V3 loop neutralizing monoclonal antibodies (mAbs). Vaccination of rabbits with these immunogens resulted in the elicitation of distinct polyclonal serum Abs that exhibit cross-subtype neutralization specificities mimicking the mAbs that guided the design. Our results prove the principle that a predictable range of epitope-specific polyclonal cross-subtype HIV-1 neutralizing Abs can be intentionally elicited in mammals by vaccination. The precise boundaries of the epitopes and conformational flexibility in the presentation of the epitopes in the immunogen appeared to be important for successful elicitation. This work may serve as a starting point for translating the activities of human broadly neutralizing anti-HIV-1 monoclonal antibodies (bNAbs) into matched immunogens that can contribute to an efficacious HIV-1 vaccine. PMID:25045827

  7. A WntD-Dependent Integral Feedback Loop Attenuates Variability in Drosophila Toll Signaling.

    PubMed

    Rahimi, Neta; Averbukh, Inna; Haskel-Ittah, Michal; Degani, Neta; Schejter, Eyal D; Barkai, Naama; Shilo, Ben-Zion

    2016-02-22

    Patterning by morphogen gradients relies on the capacity to generate reproducible distribution profiles. Morphogen spread depends on kinetic parameters, including diffusion and degradation rates, which vary between embryos, raising the question of how variability is controlled. We examined this in the context of Toll-dependent dorsoventral (DV) patterning of the Drosophila embryo. We find that low embryo-to-embryo variability in DV patterning relies on wntD, a Toll-target gene expressed initially at the posterior pole. WntD protein is secreted and disperses in the extracellular milieu, associates with its receptor Frizzled4, and inhibits the Toll pathway by blocking the Toll extracellular domain. Mathematical modeling predicts that WntD accumulates until the Toll gradient narrows to its desired spread, and we support this feedback experimentally. This circuit exemplifies a broadly applicable induction-contraction mechanism, which reduces patterning variability through a restricted morphogen-dependent expression of a secreted diffusible inhibitor. PMID:26906736

  8. Origin and genetic diversity of Egyptian native chickens based on complete sequence of mitochondrial DNA D-loop region.

    PubMed

    Osman, Sayed A-M; Yonezawa, Takahiro; Nishibori, Masahide

    2016-06-01

    Domestic chickens (Gallus gallus) play a significant role, ranging from food and entertainment to religion and ornamentation. However, the details on their domestication process are still controversial, especially the origin and evolution of African chickens. Egypt is thought to be important place for this event because of its geographic location as well as its long history of civilization. However, the genetic component and structure of Egyptian native chicken (ENC) have not been studied so far. The aim of this study is to clarify the origin and evolution of African chickens through assessing the genetic diversities and structure of five ENC breeds using the mitochondrial D-loop sequences. Our results suggest there is genetic differentiation between the pure native breeds and the improved native breeds. The latter breeds were established by the hybridization of the pure native and the exotic breeds. The pure native breeds were estimated to be established about 800 years ago. Subsequently, we extensively analyzed the D-loop sequences from the ENC as well as the globally collected chickens (2,010 individuals in total). Our phylogenetic tree among the regional populations shows African chickens can be separated to two distinct clades. The first clade consists of North African (Egypt), Central African (Sudan and Cameroon), European, and West (and Central) Asian chickens. The second clade consists of East African (Kenya, Malawi, and Zimbabwe) and Pacific chickens. It suggests the dual origins of African native chickens. The first group was probably originated from South Asia, and then migrated to West Asia, and finally arrived to Africa thorough Egypt. The second group migrated from Pacific to East Africa via Indian Ocean probably by Austronesian people. This dual origin hypothesis as well as estimated divergence times in this study is harmonious with the archaeological and historical evidences. Our migration analysis suggests there is limited gene flow within African

  9. Origin and genetic diversity of Egyptian native chickens based on complete sequence of mitochondrial DNA D-loop region.

    PubMed

    Osman, Sayed A-M; Yonezawa, Takahiro; Nishibori, Masahide

    2016-06-01

    Domestic chickens (Gallus gallus) play a significant role, ranging from food and entertainment to religion and ornamentation. However, the details on their domestication process are still controversial, especially the origin and evolution of African chickens. Egypt is thought to be important place for this event because of its geographic location as well as its long history of civilization. However, the genetic component and structure of Egyptian native chicken (ENC) have not been studied so far. The aim of this study is to clarify the origin and evolution of African chickens through assessing the genetic diversities and structure of five ENC breeds using the mitochondrial D-loop sequences. Our results suggest there is genetic differentiation between the pure native breeds and the improved native breeds. The latter breeds were established by the hybridization of the pure native and the exotic breeds. The pure native breeds were estimated to be established about 800 years ago. Subsequently, we extensively analyzed the D-loop sequences from the ENC as well as the globally collected chickens (2,010 individuals in total). Our phylogenetic tree among the regional populations shows African chickens can be separated to two distinct clades. The first clade consists of North African (Egypt), Central African (Sudan and Cameroon), European, and West (and Central) Asian chickens. The second clade consists of East African (Kenya, Malawi, and Zimbabwe) and Pacific chickens. It suggests the dual origins of African native chickens. The first group was probably originated from South Asia, and then migrated to West Asia, and finally arrived to Africa thorough Egypt. The second group migrated from Pacific to East Africa via Indian Ocean probably by Austronesian people. This dual origin hypothesis as well as estimated divergence times in this study is harmonious with the archaeological and historical evidences. Our migration analysis suggests there is limited gene flow within African

  10. Closed-loop control of a shape memory alloy actuation system for variable area fan nozzle

    NASA Astrophysics Data System (ADS)

    Barooah, Prabir; Rey, Nancy

    2002-07-01

    Shape Memory Alloys have been used in a wide variety of actuation applications. A bundled shape memory alloy cable actuator, capable of providing large force and displacement has been developed by United Technologies Corporation (patents pending) for actuating a Variable Area fan Nozzle (VAN). The ability to control fan nozzle exit area is an enabling technology for the next generation turbofan engines. Performance benefits for VAN engines are estimated to be up to 9% in Thrust Specific Fuel Consumption (TSFC) compared to traditional fixed geometry designs. The advantage of SMA actuated VAN design is light weight and low complexity compared to conventionally actuated designs. To achieve the maximum efficiency from a VAN engine, the nozzle exit area has to be continuously varied for a certain period of time during climb, since the optimum nozzle exit area is a function of several flight variables (flight Mach number, altitude etc). Hence, the actuator had to be controlled to provide the time varying desired nozzle area. A new control algorithm was developed for this purpose, which produced the desired flap area by metering the resistive heating of the SMA actuator. Since no active cooling was used, reducing overshoot was a significant challenge of the controller. A full scale, 2 flap model of the VAN system was built, which was capable of simulating a 20% nozzle area variation, and tested under full scale aerodynamic load in NASA Langley Jet Exit Test facility. The controller met all the requirements of the actuation system and was able to drive the flap position to the desired position with less than 2% overshoot in step input tests. The controller is based on a adaptive algorithm formulation with logical switches that reduces its overshoot error. Although the effectiveness of the controller was demonstrated in full scale model tests, no theoretical results as to its stability and robustness has been derived. Stability of the controller will have to be investigated

  11. Examining the Relationship between Immediate Serial Recall and Immediate Free Recall: Common Effects of Phonological Loop Variables but Only Limited Evidence for the Phonological Loop

    ERIC Educational Resources Information Center

    Spurgeon, Jessica; Ward, Geoff; Matthews, William J.

    2014-01-01

    We examined the contribution of the phonological loop to immediate free recall (IFR) and immediate serial recall (ISR) of lists of between one and 15 words. Following Baddeley (1986, 2000, 2007, 2012), we assumed that visual words could be recoded into the phonological store when presented silently but that recoding would be prevented by…

  12. Complete nucleotide sequence of the linear DNA plasmid pRS224 with hairpin loops from Rhizoctonia solani and its unique transcriptional form.

    PubMed

    Katsura, K; Sasaki, A; Nagasaka, A; Fuji, M; Miyake, Y; Hashiba, T

    2001-10-01

    The complete nucleotide sequence of the linear DNA plasmid (pRS224-1) from the plant-pathogenic fungus Rhizoctonia solani isolate H-16 was determined; and its unique RNA transcripts were characterized. The pRS224-1 DNA consists of 4,986 nucleotides. A computer-based study of the folding of pRS224-1 at both termini predicted hairpin-loop structures. The hairpin loops consisted of the left and right termini of 236 and 264 nucleotides, respectively, and share no sequence homology. Unique poly(A) RNAs, 4.7 kb and 7.4 kb in length and hybridizing with the pRS224 DNA, were found in mycelial cells of R. solani H-16. Transcript product-mapping allowed the prediction of the locations of different expression signals. The 7.4-kb transcript is generated from the left terminal region of the complementary strand, via the full-length sense-strand, to the right terminal region of the complementary strand. The 4.7-kb transcript is generated from the center region of the sense strand to the right terminal region of the complementary strand. One open reading frame (ORF) found in pRS224-1 is 887 amino acids long and has a potential coding capacity of 102 kDa. The ORF contains the highly conserved domains characteristic of reverse transcriptase sequences, including the highly conserved YXDD sequence.

  13. Complete amino acid sequence of an acidic, cardiotoxic phospholipase A2 from the venom of Ophiophagus hannah (King Cobra): a novel cobra venom enzyme with "pancreatic loop".

    PubMed

    Huang, M Z; Gopalakrishnakone, P; Chung, M C; Kini, R M

    1997-02-15

    A phospholipase A2 (OHV A-PLA2) from the venom of Ophiophagus hannah (King cobra) is an acidic protein exhibiting cardiotoxicity, myotoxicity, and antiplatelet activity. The complete amino acid sequence of OHV A-PLA2 has been determined using a combination of Edman degradation and mass spectrometric techniques. OHV A-PLA2 is composed of a single chain of 124 amino acid residues with 14 cysteines and a calculated molecular weight of 13719 Da. It contains the loop of residues (62-66) found in pancreatic PLA2s and hence belongs to class IB enzymes. This pancreatic loop is between two proline residues (Pro 59 and Pro 68) and contains several hydrophilic amino acids (Ser and Asp). This region has high degree of conformational flexibility and is on the surface of the molecule, and hence it may be a potential protein-protein interaction site. A relatively low sequence homology is found between OHV A-PLA2 and other known cardiotoxic PLA2s, and hence a contiguous segment could not be identified as a site responsible for the cardiotoxic activity.

  14. The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: the putative D-loop and a novel ORF of unknown function.

    PubMed

    Flot, Jean-François; Tillier, Simon

    2007-10-15

    The complete mitochondrial genomes of two individuals attributed to different morphospecies of the scleractinian coral genus Pocillopora have been sequenced. Both genomes, respectively 17,415 and 17,422 nt long, share the presence of a previously undescribed ORF encoding a putative protein made up of 302 amino acids and of unknown function. Surprisingly, this ORF turns out to be the second most variable region of the mitochondrial genome (1% nucleotide sequence difference between the two individuals) after the putative control region (1.5% sequence difference). Except for the presence of this ORF and for the location of the putative control region, the mitochondrial genome of Pocillopora is organized in a fashion similar to the other scleractinian coral genomes published to date. For the first time in a cnidarian, a putative second origin of replication is described based on its secondary structure similar to the stem-loop structure of O(L), the origin of L-strand replication in vertebrates.

  15. Relationship of the human immunodeficiency virus type 1 gp120 third variable loop to a component of the CD4 binding site in the fourth conserved region.

    PubMed Central

    Wyatt, R; Thali, M; Tilley, S; Pinter, A; Posner, M; Ho, D; Robinson, J; Sodroski, J

    1992-01-01

    Neutralizing antibodies that recognize the human immunodeficiency virus gp120 exterior envelope glycoprotein and are directed against either the third variable (V3) loop or conserved, discontinuous epitopes overlapping the CD4 binding region have been described. Here we report several observations that suggest a structural relationship between the V3 loop and amino acids in the fourth conserved (C4) gp120 region that constitute part of the CD4 binding site and the conserved neutralization epitopes. Treatment of the gp120 glycoprotein with ionic detergents resulted in a V3 loop-dependent masking of both linear C4 epitopes and discontinuous neutralization epitopes overlapping the CD4 binding site. Increased recognition of the native gp120 glycoprotein by an anti-V3 loop monoclonal antibody, 9284, resulted from from single amino acid changes either in the base of the V3 loop or in the gp120 C4 region. These amino acid changes also resulted in increased exposure of conserved epitopes overlapping the CD4 binding region. The replication-competent subset of these mutants exhibited increased sensitivity to neutralization by antibody 9284 and anti-CD4 binding site antibodies. The implied relationship of the V3 loop, which mediates post-receptor binding steps in virus entry, and components of the CD4 binding region may be important for the interaction of these functional gp120 domains and for the observed cooperativity of neutralizing antibodies directed against these regions. Images PMID:1279195

  16. The V4 and V5 Variable Loops of HIV-1 Envelope Glycoprotein Are Tolerant to Insertion of Green Fluorescent Protein and Are Useful Targets for Labeling.

    PubMed

    Nakane, Shuhei; Iwamoto, Aikichi; Matsuda, Zene

    2015-06-12

    The mature human immunodeficiency virus type 1 (HIV-1) envelope glycoprotein (Env) comprises the non-covalently associated gp120 and gp41 subunits generated from the gp160 precursor. Recent structural analyses have provided quaternary structural models for gp120/gp41 trimers, including the variable loops (V1-V5) of gp120. In these models, the V3 loop is located under V1/V2 at the apical center of the Env trimer, and the V4 and V5 loops project outward from the trimeric protomers. In addition, the V4 and V5 loops are predicted to have less movement upon receptor binding during membrane fusion events. We performed insertional mutagenesis using a GFP variant, GFPOPT, placed into the variable loops of HXB2 gp120. This allowed us to evaluate the current structural models and to simultaneously generate a GFP-tagged HIV-1 Env, which was useful for image analyses. All GFP-inserted mutants showed similar levels of whole-cell expression, although certain mutants, particularly V3 mutants, showed lower levels of cell surface expression. Functional evaluation of their fusogenicities in cell-cell and virus-like particle-cell fusion assays revealed that V3 was the most sensitive to the insertion and that the V1/V2 loops were less sensitive than V3. The V4 and V5 loops were the most tolerant to insertion, and certain tag proteins other than GFPOPT could also be inserted without functional consequences. Our results support the current structural models and provide a GFPOPT-tagged Env construct for imaging studies.

  17. Design of Experiments with Multiple Independent Variables: A Resource Management Perspective on Complete and Reduced Factorial Designs

    ERIC Educational Resources Information Center

    Collins, Linda M.; Dziak, John J.; Li, Runze

    2009-01-01

    An investigator who plans to conduct an experiment with multiple independent variables must decide whether to use a complete or reduced factorial design. This article advocates a resource management perspective on making this decision, in which the investigator seeks a strategic balance between service to scientific objectives and economy.…

  18. Genetic variability between complete mitochondrion genomes of the sablefish, Anoplopoma fimbria (Pallas, 1814).

    PubMed

    Galván-Tirado, Carolina; Del Río-Portilla, Miguel Angel; Delgado-Vega, Rigoberto; García-De León, Francisco J

    2016-07-01

    The complete mitochondrial genome of the sablefish, Anoplopoma fimbria (Genbank accession KP777542) is 16,507 bp in size and contains the typical 37 genes (13 protein-coding, 2 ribosomal RNA, and 22 transfer RNA) found in teleosts mitogenomes. The genome varies in 118 positions with respect to another mitogenome sablefish specimen.

  19. Involvement of the V1/V2 variable loop structure in the exposure of human immunodeficiency virus type 1 gp120 epitopes induced by receptor binding.

    PubMed Central

    Wyatt, R; Moore, J; Accola, M; Desjardin, E; Robinson, J; Sodroski, J

    1995-01-01

    The binding of human immunodeficiency virus type 1 (HIV-1) to the cellular receptor CD4 has been suggested to induce conformational changes in the viral envelope glycoproteins that promote virus entry. Conserved, discontinuous epitopes on the HIV-1 gp120 glycoprotein recognized by the 17b, 48d, and A32 antibodies are preferentially exposed upon the binding of soluble CD4 (sCD4). The binding of the 17b and 48d antibodies to the gp120 glycoprotein can also be enhanced by the binding of the A32 antibody. Here we constructed HIV-1 gp120 mutants in which the variable segments of the V1/V2 and V3 structures were deleted, individually or in combination, while the 17b, 48d, and A32 epitopes were retained. The effects of the variable loop deletions on the function of the HIV-1 envelope glycoproteins and on the exposure of epitopes induced by sCD4 or A32 binding to the monomeric gp120 glycoprotein were examined. The variable-loop-deleted envelope glycoproteins were able to mediate virus entry, albeit at lower efficiencies than those of the wild-type glycoproteins. Thus, the V1/V2 and V3 variable sequences contribute to the efficiency of HIV-1 entry but are not absolutely required for the process. Neither the V1/V2 nor V3 loops were necessary for the increase in exposure of the 17b/48d epitopes induced by binding of the A32 monoclonal antibody. By contrast, induction of the 17b, 48d, and A32 epitopes by sCD4 binding apparently involves a movement of the V1/V2 loops, which in the absence of CD4 partially mask these epitopes on the native gp120 monomer. The results obtained with a mutant glycoprotein containing a deletion of the V1 loop alone indicated that the contribution of the V2 loop to these phenomena was more significant than that of the V1 sequences. These results suggest that the V1/V2 loops, which have been previously implicated in CD4-modulated, postattachment steps in HIV-1 entry, contribute to CD4-induced gp120 conformational changes detected by the 17b, 48d, and A

  20. Adenoviral vectors elicit humoral immunity against variable loop 2 of clade C HIV-1 gp120 via “Antigen Capsid-Incorporation” strategy

    PubMed Central

    Gu, Linlin; Krendelchtchikova, Valentina; Krendelchtchikov, Alexandre; Farrow, Anitra L.; Derdeyn, Cynthia A.; Matthews, Qiana L.

    2016-01-01

    Adenoviral (Ad) vectors in combination with the “Antigen Capsid-Incorporation” strategy have been applied in developing HIV-1 vaccines, due to the vectors’ abilities in incorporating and inducing immunity of capsid-incorporated antigens. Variable loop 2 (V2)-specific antibodies were suggested in the RV144 trial to correlate with reduced HIV-1 acquisition, which highlights the importance of developing novel HIV-1 vaccines by targeting the V2 loop. Therefore, the V2 loop of HIV-1 has been incorporated into the Ad capsid protein. We generated adenovirus serotype 5 (Ad5) vectors displaying variable loop 2 (V2) of HIV-1 gp120, with the “Antigen Capsid-Incorporation” strategy. To assess the incorporation capabilities on hexon hypervariable region1 (HVR1) and protein IX (pIX), 20aa or full length (43aa) of V2 and V1V2 (67aa) were incorporated, respectively. Immunizations with the recombinant vectors significantly generated antibodies against both linear and discontinuous V2 epitopes. The immunizations generated durable humoral immunity against V2. This study will lead to more stringent development of various serotypes of adenovirus-vectored V2 vaccine candidates, based on breakthroughs regarding the immunogenicity of V2. PMID:26499044

  1. Adenoviral vectors elicit humoral immunity against variable loop 2 of clade C HIV-1 gp120 via "Antigen Capsid-Incorporation" strategy.

    PubMed

    Gu, Linlin; Krendelchtchikova, Valentina; Krendelchtchikov, Alexandre; Farrow, Anitra L; Derdeyn, Cynthia A; Matthews, Qiana L

    2016-01-01

    Adenoviral (Ad) vectors in combination with the "Antigen Capsid-Incorporation" strategy have been applied in developing HIV-1 vaccines, due to the vectors׳ abilities in incorporating and inducing immunity of capsid-incorporated antigens. Variable loop 2 (V2)-specific antibodies were suggested in the RV144 trial to correlate with reduced HIV-1 acquisition, which highlights the importance of developing novel HIV-1 vaccines by targeting the V2 loop. Therefore, the V2 loop of HIV-1 has been incorporated into the Ad capsid protein. We generated adenovirus serotype 5 (Ad5) vectors displaying variable loop 2 (V2) of HIV-1 gp120, with the "Antigen Capsid-Incorporation" strategy. To assess the incorporation capabilities on hexon hypervariable region1 (HVR1) and protein IX (pIX), 20aa or full length (43aa) of V2 and V1V2 (67aa) were incorporated, respectively. Immunizations with the recombinant vectors significantly generated antibodies against both linear and discontinuous V2 epitopes. The immunizations generated durable humoral immunity against V2. This study will lead to more stringent development of various serotypes of adenovirus-vectored V2 vaccine candidates, based on breakthroughs regarding the immunogenicity of V2.

  2. Complete one-loop MSSM predictions for B{sup 0}{yields}l{sup +}l{sup '-} at the Tevatron and LHC

    SciTech Connect

    Dedes, Athanasios; Rosiek, Janusz; Tanedo, Philip

    2009-03-01

    During the last few years the Tevatron has dramatically improved the bounds on rare B-meson decays into two leptons. In the case of B{sub s}{sup 0}{yields}{mu}{sup +}{mu}{sup -}, the current bound is only 10 times greater than the standard model expectation. Sensitivity to this decay is one of the benchmark goals for LHCb performance and physics. The Higgs penguin dominates this rate in the region of large tan{beta} of the minimal supersymmetric standard model. This is not necessarily the case in the region of low tan{beta}, since box and Z-penguin diagrams may contribute at a comparable rate. In this article, we compute the complete one-loop minimal supersymmetric standard model contribution to B{sub s,d}{sup 0}{yields}l{sup +}l{sup '-} for l, l{sup '}=e, {mu}. We study the predictions for general values of tan{beta} with arbitrary flavor mixing parameters. We discuss the possibility of both enhancing and suppressing the branching ratios relative to their standard model expectations. In particular, we find that there are 'cancellation regions' in parameter space where the branching ratio is suppressed well below the standard model expectation, making it effectively invisible to the LHC.

  3. Open spin chains with generic integrable boundaries: Baxter equation and Bethe ansatz completeness from separation of variables

    NASA Astrophysics Data System (ADS)

    Kitanine, N.; Maillet, J. M.; Niccoli, G.

    2014-05-01

    We solve the longstanding problem of defining a functional characterization of the spectrum of the transfer matrix associated with the most general spin-1/2 representations of the six-vertex reflection algebra for general inhomogeneous chains. The corresponding homogeneous limit reproduces the spectrum of the Hamiltonian of the spin-1/2 open XXZ and XXX quantum chains with the most general integrable boundaries. The spectrum is characterized by a second order finite difference functional equation of Baxter type with an inhomogeneous term which vanishes only for some special but yet interesting non-diagonal boundary conditions. This functional equation is shown to be equivalent to the known separation of variables (SOV) representation, hence proving that it defines a complete characterization of the transfer matrix spectrum. The polynomial form of the Q-function allows us to show that a finite system of generalized Bethe equations can also be used to describe the complete transfer matrix spectrum.

  4. Coupled dual loop absorption heat pump

    DOEpatents

    Sarkisian, Paul H.; Reimann, Robert C.; Biermann, Wendell J.

    1985-01-01

    A coupled dual loop absorption system which utilizes two separate complete loops. Each individual loop operates at three temperatures and two pressures. This low temperature loop absorber and condenser are thermally coupled to the high temperature loop evaporator, and the high temperature loop condenser and absorber are thermally coupled to the low temperature generator.

  5. Determining the invariant structure elements of the HIV-1 variable V3 loops: insight into the HIV-MN and HIV-Haiti isolates.

    PubMed

    Andrianov, Alexander M

    2008-10-01

    The computer approaches that combined the 3D protein structure modeling with the mathematical statistics methods were used to compute the NMR-based 3D structures of the HIV-1 gp120 V3 loop for the HIV-MN and HIV-Haiti isolates in water as well as to compare their conformational characteristics with the purpose of determining the structure elements common for the two virus modifications. As a result, the variability of the amino acid sequence was found to stimulate the considerable structural rearrangements of the V3 loop. However, despite this fact, one functionally crucial stretch of V3 and a greater portion of its residues were shown to preserve the conformations in the viral strains of interest. To reveal the structural motifs and individual amino acids giving rise to the close conformations in the HIV-MN and HIV-Haiti V3 loops regardless of the sequence and environment variability, the simulated structures were collated with those deciphered previously in terms of NMR data in a water/trifluoroethanol mixed solvent. The structure elements and single residues of V3 residing in its biologically significant sites and keeping the conformations in all of the cases at question are considered to be the promising targets for anti-AIDS drugs studies. In this context, the structurally inflexible motifs of V3 presenting the weak units in the virus protection system may be utilized as the most convenient landing-places for molecular docking of the V3 loop and ligand structures followed by selecting chemical compounds suitable as a basis for the design of safe and effective antiviral agents. PMID:18597546

  6. Design of experiments with multiple independent variables: a resource management perspective on complete and reduced factorial designs.

    PubMed

    Collins, Linda M; Dziak, John J; Li, Runze

    2009-09-01

    An investigator who plans to conduct an experiment with multiple independent variables must decide whether to use a complete or reduced factorial design. This article advocates a resource management perspective on making this decision, in which the investigator seeks a strategic balance between service to scientific objectives and economy. Considerations in making design decisions include whether research questions are framed as main effects or simple effects; whether and which effects are aliased (confounded) in a particular design; the number of experimental conditions that must be implemented in a particular design and the number of experimental subjects the design requires to maintain the desired level of statistical power; and the costs associated with implementing experimental conditions and obtaining experimental subjects. In this article 4 design options are compared: complete factorial, individual experiments, single factor, and fractional factorial. Complete and fractional factorial designs and single-factor designs are generally more economical than conducting individual experiments on each factor. Although relatively unfamiliar to behavioral scientists, fractional factorial designs merit serious consideration because of their economy and versatility.

  7. Regulative Loops, Step Loops and Task Loops

    ERIC Educational Resources Information Center

    VanLehn, Kurt

    2016-01-01

    This commentary suggests a generalization of the conception of the behavior of tutoring systems, which the target article characterized as having an outer loop that was executed once per task and an inner loop that was executed once per step of the task. A more general conception sees these two loops as instances of regulative loops, which…

  8. The Shark Strikes Twice: Hypervariable Loop 2 of Shark IgNAR Antibody Variable Domains and Its Potential to Function as an Autonomous Paratope.

    PubMed

    Zielonka, Stefan; Empting, Martin; Könning, Doreen; Grzeschik, Julius; Krah, Simon; Becker, Stefan; Dickgießer, Stephan; Kolmar, Harald

    2015-08-01

    In this present study, we engineered hypervariable loop 2 (HV2) of the IgNAR variable domain in a way that it solely facilitates antigen binding, potentially functioning as an autonomous paratope. For this, the surface-exposed loop corresponding to HV2 was diversified and antigen-specific variable domain of IgNAR antibody (vNAR) molecules were isolated by library screening using yeast surface display (YSD) as platform technology. An epithelial cell adhesion molecule (EpCAM)-specific vNAR was used as starting material, and nine residues in HV2 were randomized. Target-specific clones comprising a new HV2-mediated paratope were isolated against cluster of differentiation 3ε (CD3ε) and human Fcγ while retaining high affinity for EpCAM. Essentially, we demonstrate that a new paratope comprising moderate affinities against a given target molecule can be engineered into the vNAR scaffold that acts independent of the original antigen-binding site, composed of complementarity-determining region 3 (CDR3) and CDR1. PMID:26003538

  9. The Shark Strikes Twice: Hypervariable Loop 2 of Shark IgNAR Antibody Variable Domains and Its Potential to Function as an Autonomous Paratope.

    PubMed

    Zielonka, Stefan; Empting, Martin; Könning, Doreen; Grzeschik, Julius; Krah, Simon; Becker, Stefan; Dickgießer, Stephan; Kolmar, Harald

    2015-08-01

    In this present study, we engineered hypervariable loop 2 (HV2) of the IgNAR variable domain in a way that it solely facilitates antigen binding, potentially functioning as an autonomous paratope. For this, the surface-exposed loop corresponding to HV2 was diversified and antigen-specific variable domain of IgNAR antibody (vNAR) molecules were isolated by library screening using yeast surface display (YSD) as platform technology. An epithelial cell adhesion molecule (EpCAM)-specific vNAR was used as starting material, and nine residues in HV2 were randomized. Target-specific clones comprising a new HV2-mediated paratope were isolated against cluster of differentiation 3ε (CD3ε) and human Fcγ while retaining high affinity for EpCAM. Essentially, we demonstrate that a new paratope comprising moderate affinities against a given target molecule can be engineered into the vNAR scaffold that acts independent of the original antigen-binding site, composed of complementarity-determining region 3 (CDR3) and CDR1.

  10. Modelling the spatial and temporal variability of the SW lagoon of New Caledonia I: a new biogeochemical model based on microbial loop recycling.

    PubMed

    Faure, Vincent; Pinazo, Christel; Torréton, Jean-Pascal; Jacquet, Séverine

    2010-01-01

    This work is an extension and improved version of the biogeochemical model of the South-West lagoon of New Caledonia, presented by Bujan et al. (2000) and Pinazo et al. (2004). This new ecological model was developed to include an explicit description of the microbial loop. Additional variables included bacterial production and dissolved organic matter and a better description of organic matter recycling. A particular effort was made to calibrate parameters of the model for the studied area, using representative field measurements and experiments. The biogeochemical model described the nitrogen and carbon cycles relating the variable stoichiometry of the elements in each biological compartment. Several lagoon surveys demonstrated that, on average, the water column is nearly homogenous. We chose therefore to present in this paper non dimensional model outputs in order to study the behaviour of the new model. The addition of a microbial loop modified the simulated functioning of the lagoon and the fluxes of carbon and nitrogen between the different compartments: it allowed a better description of the recycling of organic matter, recognized as important processes in oligotrophic ecosystems like in the SW lagoon of NC. A sensitivity analysis was performed in order to identify the most sensitive parameters and variables of the model. The different results emphasised the importance of the dissolved inorganic and organic compartment. Preliminary comparisons with field data showed that the model reproduced realistic values. However, the next important step of this work was to dynamically couple this new biogeochemical model in a 3D hydrodynamical model in order: (1) to perform a realistic validation with in situ data (2) to achieve an analysis of the spatial and temporal variability of the ecosystem. This study is presented in the companion paper (Faure et al., 2010).

  11. Identification of New Regions in HIV-1 gp120 Variable 2 and 3 Loops that Bind to α4β7 Integrin Receptor

    PubMed Central

    Peachman, Kristina K.; Karasavvas, Nicos; Chenine, Agnes-Laurence; McLinden, Robert; Rerks-Ngarm, Supachai; Jaranit, Kaewkungwal; Nitayaphan, Sorachai; Pitisuttithum, Punnee; Tovanabutra, Sodsai; Zolla-Pazner, Susan; Michael, Nelson L.; Kim, Jerome H.; Alving, Carl R.; Rao, Mangala

    2015-01-01

    Background The gut mucosal homing integrin receptor α4β7 present on activated CD4+ T cells interacts with the HIV-1 gp120 second variable loop (V2). Case control analysis of the RV144 phase III vaccine trial demonstrated that plasma IgG binding antibodies specific to scaffolded proteins expressing the first and second variable regions (V1V2) of HIV envelope protein gp120 containing the α4β7 binding motif correlated inversely with risk of infection. Subsequently antibodies to the V3 region were also shown to correlate with protection. The integrin receptor α4β7 was shown to interact with the LDI/V motif on V2 loop but recent studies suggest that additional regions of V2 loop could interact with the α4β7. Thus, there may be several regions on the V2 and possibly V3 loops that may be involved in this binding. Using a cell line, that constitutively expressed α4β7 receptors but lacked CD4, we examined the contribution of V2 and V3 loops and the ability of V2 peptide-, V2 integrin-, V3-specific monoclonal antibodies (mAbs), and purified IgG from RV144 vaccinees to block the V2/V3-α4β7 interaction. Results We demonstrate that α4β7 on RPMI8866 cells bound specifically to its natural ligand mucosal addressin cell adhesion molecule-1 (MAdCAM-1) as well as to cyclic-V2 and cyclic-V3 peptides. This binding was inhibited by anti-α4β7-specific monoclonal antibody (mAb) ACT-1, mAbs specific to either V2 or V3 loops, and by purified primary virions or infectious molecular clones expressing envelopes from acute or chronic subtypes A, C, and CRF01_AE viruses. Plasma from HIV-1 infected Thai individuals as well as purified IgG from uninfected RV144 vaccinees inhibited (0–50%) the binding of V2 and V3 peptides to α4β7. Conclusion Our results indicate that in addition to the tripeptide LDI/V motif, other regions of the V2 and V3 loops of gp120 were involved in binding to α4β7 receptors and this interaction was blocked by anti-V2 peptide, anti-V2 integrin, and anti

  12. Spherically symmetric gravity coupled to a scalar field with a local Hamiltonian: the complete initial-boundary value problem using metric variables

    NASA Astrophysics Data System (ADS)

    Gambini, Rodolfo; Pullin, Jorge

    2013-01-01

    We discuss a gauge fixing of gravity coupled to a scalar field in spherical symmetry such that the Hamiltonian is an integral over space of a local density. In a previous paper, we had presented it using Ashtekar’s new variables. Here we study it in metric variables. We specify completely the initial-boundary value problem for ingoing Gaussian pulses.

  13. iHeartLift: a closed loop system with bio-feedback that uses music tempo variability to improve heart rate variability.

    PubMed

    Ho, Thomas C T; Chen, Xiang

    2011-01-01

    "Musica delenit bestiam feram" translates into "Music soothes the savage beast". There is a hidden truth in this ancient quip passed down from generations. Besides soothing the heart, it also incites the heart to a healthier level of heart rate variability (HRV). In this paper, an approach to use and test music and biofeedback to increase the heart rate variability for people facing daily stress is discussed. By determining the music tempo variability (MTV) of a piece of music and current heart rate variability, iHeartLift is able to compare the 2 trends and locate a musical piece that is suited to increase the user's heart rate variability to a healthier level. With biofeedback, the 2 trends are continuously compared in real-time and the musical piece is changed in accordance with the current comparisons. A study was conducted and it was generally found that HRV can be uplifted by music regardless of language and meaning of musical lyrics but with limitations to musical genre.

  14. iHeartLift: a closed loop system with bio-feedback that uses music tempo variability to improve heart rate variability.

    PubMed

    Ho, Thomas C T; Chen, Xiang

    2011-01-01

    "Musica delenit bestiam feram" translates into "Music soothes the savage beast". There is a hidden truth in this ancient quip passed down from generations. Besides soothing the heart, it also incites the heart to a healthier level of heart rate variability (HRV). In this paper, an approach to use and test music and biofeedback to increase the heart rate variability for people facing daily stress is discussed. By determining the music tempo variability (MTV) of a piece of music and current heart rate variability, iHeartLift is able to compare the 2 trends and locate a musical piece that is suited to increase the user's heart rate variability to a healthier level. With biofeedback, the 2 trends are continuously compared in real-time and the musical piece is changed in accordance with the current comparisons. A study was conducted and it was generally found that HRV can be uplifted by music regardless of language and meaning of musical lyrics but with limitations to musical genre. PMID:22254526

  15. Variability in the annual cycle of Northern Hemisphere snow extent, using a newly completed climate data record

    NASA Astrophysics Data System (ADS)

    Henderson, G. R.; Leathers, D. J.; Robinson, D. A.

    2012-12-01

    Variability in the annual cycle of Northern Hemisphere snow cover extent (SCE) may have important impacts on the global climate system through a number of potential feedback mechanisms. Motivated by recent snow literature heralding reports ranging from earlier spring melt, to an overall seasonal decrease in SCE, both spatial and temporal variability in extent are explored using a newly completed SCE climate data record (CDR). From a hydrologic standpoint, such shifts have huge implications to the overall climatology of any region with snow present in its seasonal cycle. The SCE CDR utilized in this study is the result of a reanalysis of NOAA satellite-derived maps of NH continental SCE and begins in 1966. The earlier 33 years of data are drawn from coarse-scale weekly NOAA maps, whilst recent years are based on a downgraded version of the IMS 24 km NOAA product, currently produced by the National Ice Center. The Rutgers Global Snow Lab undertook reanalysis and merging of the different resolution datasets as part of the NASA MEaSUREs project. Principal component (PC) analysis was performed on the annual cycle of NH, and individual continental snow extent totals. Close to 75% of variance was explained by the first three PCs, in the case of NH and Eurasia snow extents. Snow composite analysis based on positive PC scores time series years displays greater snow extent, in excess of 4 × 106 km2 in the case of the NH alone. Preliminary assessment of associations with large-scale atmospheric patterns (e.g. surface air temperature, mid-tropospheric geopotential height), yielded patterns indicative of know teleconnection patterns such as the AO and NAO indices. Results from additional PC analysis performed spatially on the SCE CDR will be discussed.

  16. Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops

    SciTech Connect

    Kwon, Young Do; Finzi, Andrés; Wu, Xueling; Dogo-Isonagie, Cajetan; Lee, Lawrence K.; Moore, Lucas R.; Schmidt, Stephen D.; Stuckey, Jonathan; Yang, Yongping; Zhou, Tongqing; Zhu, Jiang; Vicic, David A.; Debnath, Asim K.; Shapiro, Lawrence; Bewley, Carole A.; Mascola, John R.; Sodroski, Joseph G.; Kwong, Peter D.

    2013-03-04

    The HIV-1 envelope (Env) spike (gp120{sub 3}/gp41{sub 3}) undergoes considerable structural rearrangements to mediate virus entry into cells and to evade the host immune response. Engagement of CD4, the primary human receptor, fixes a particular conformation and primes Env for entry. The CD4-bound state, however, is prone to spontaneous inactivation and susceptible to antibody neutralization. How does unliganded HIV-1 maintain CD4-binding capacity and regulate transitions to the CD4-bound state? To define this mechanistically, we determined crystal structures of unliganded core gp120 from HIV-1 clades B, C, and E. Notably, all of these unliganded HIV-1 structures resembled the CD4-bound state. Conformational fixation with ligand selection and thermodynamic analysis of full-length and core gp120 interactions revealed that the tendency of HIV-1 gp120 to adopt the CD4-bound conformation was restrained by the V1/V2- and V3-variable loops. In parallel, we determined the structure of core gp120 in complex with the small molecule, NBD-556, which specifically recognizes the CD4-bound conformation of gp120. Neutralization by NBD-556 indicated that Env spikes on primary isolates rarely assume the CD4-bound conformation spontaneously, although they could do so when quaternary restraints were loosened. Together, the results suggest that the CD4-bound conformation represents a 'ground state' for the gp120 core, with variable loop and quaternary interactions restraining unliganded gp120 from 'snapping' into this conformation. A mechanism of control involving deformations in unliganded structure from a functionally critical state (e.g., the CD4-bound state) provides advantages in terms of HIV-1 Env structural diversity and resistance to antibodies and inhibitors, while maintaining elements essential for entry.

  17. In vivo distribution and cytopathology of variants of human immunodeficiency virus type 1 showing restricted sequence variability in the V3 loop.

    PubMed Central

    Donaldson, Y K; Bell, J E; Holmes, E C; Hughes, E S; Brown, H K; Simmonds, P

    1994-01-01

    The distribution, cell tropism, and cytopathology in vivo of human immunodeficiency virus (HIV) was investigated in postmortem tissue samples from a series of HIV-infected individuals who died either of complications associated with AIDS or for unrelated reasons while they were asymptomatic. Proviral sequences were detected at a high copy number in lymphoid tissue of both presymptomatic patients and patients with AIDS, whereas significant infection of nonlymphoid tissue such as that from brains, spinal cords, and lungs were confined to those with AIDS. V3 loop sequences from both groups showed highly restricted sequence variability and a low overall positive charge of the encoded amino acid sequence compared with those of standard laboratory isolates of HIV type 1 (HIV-1). The low charge and the restriction in sequence variability were comparable to those observed with isolates showing a non-syncytium-inducing (NSI) and macrophage-tropic phenotype in vitro. All patients were either exclusively infected (six of seven cases) or predominantly infected (one case) with variants with a predicted NSI/macrophage-tropic phenotype, irrespective of the degree of disease progression. p24 antigen was detected by immunocytochemical staining of paraffin-fixed sections in the germinal centers within lymphoid tissue, although little or no antigen was found in areas of lymph node or spleen containing T lymphocytes from either presymptomatic patients or patients with AIDS. The predominant p24 antigen-expressing cells in the lungs and brains of the patients with AIDS were macrophages and microglia (in brains), frequently forming multinucleated giant cells (syncytia) even though the V3 loop sequences of these variants resembled those of NSI isolates in vitro. These studies indicate that lack of syncytium-forming ability in established T-cell lines does not necessarily predict syncytium-forming ability in primary target cells in vivo. Furthermore, variants of HIV with V3 sequences

  18. On the simultaneous analysis of several complete samples - The V/Vmax and Ve/Va variables, with applications to quasars

    NASA Technical Reports Server (NTRS)

    Avni, Y.; Bahcall, J. N.

    1980-01-01

    Methods are derived for applying the V/Vmax variable when several complete samples are analyzed simultaneously. A new, related, variable, V(e)/V(a), which is superior to V/Vmax when sufficient observational data are available, is introduced. It is shown how statistically independent complete samples can be generated from partially overlapping samples such that each observed object appears only once in the analysis. These methods make it possible to combine the information from different complete samples, and to make an efficient use of all available data. Illustrative examples for quasars are given. It is shown how the generalized V/Vmax and V(e)/V(a) can be used to find the amount of cosmological evolution of quasars and its associated range of uncertainty.

  19. Patterns of the loop current system and regions of sea surface height variability in the eastern Gulf of Mexico revealed by the self-organizing maps

    NASA Astrophysics Data System (ADS)

    Liu, Yonggang; Weisberg, Robert H.; Vignudelli, Stefano; Mitchum, Gary T.

    2016-04-01

    The Self-Organizing Map (SOM), an unsupervised learning neural network, is employed to extract patterns evinced by the Loop Current (LC) system and to identify regions of sea surface height (SSH) variability in the eastern Gulf of Mexico (GoM) from 23 years (1993-2015) of altimetry data. Spatial patterns are characterized as different LC extensions and different stages in the process of LC eddy shedding. The temporal evolutions and the frequency of occurrences of these patterns are obtained, and the typical trajectories of the LC system progression on the SOM grid are investigated. For an elongated, northwest-extended, or west-positioned LC, it is common for the LC anticyclonic eddy (LCE) to separate and propagate into the western GoM, while an initially separated LCE in close proximity to the west Florida continental slope often reattaches to the LC and develops into an elongated LC, or reduces intensity locally before moving westward as a smaller eddy. Regions of differing SSH variations are also identified using the joint SOM-wavelet analysis. Along the general axis of the LC, SSH exhibits strong variability on time scales of 3 months to 2 years, also with energetic intraseasonal variations, which is consistent with the joint Empirical Orthogonal Function (EOF)-wavelet analysis. In the more peripheral regions, the SSH has a dominant seasonal variation that also projects across the coastal ocean. The SOM, when applied to both space and time domains of the same data, provides a powerful tool for diagnosing ocean processes from such different perspectives.

  20. Complete multiwavelength evolution of galactic black hole transients during outburst decay. II. Compact jets and X-ray variability properties

    SciTech Connect

    Dinçer, T.; Kalemci, E.; Tomsick, J. A.; Buxton, M. M.; Bailyn, C. D.

    2014-11-01

    We investigated the relation between compact jet emission and X-ray variability properties of all black hole transients with multiwavelength coverage during their outburst decays. We studied the evolution of all power spectral components (including low-frequency quasi-periodic oscillations; QPOs), and related this evolution to changes in jet properties tracked by radio and infrared observations. We grouped sources according to their tracks in the radio/X-ray luminosity relation and show that the standards show stronger broadband X-ray variability than outliers at a given X-ray luminosity when the compact jet turns on. This trend is consistent with the internal shock model and can be important for the understanding of the presence of tracks in the radio/X-ray luminosity relation. We also observed that the total and the QPO rms amplitudes increase together during the earlier part of the outburst decay, but after the compact jet turns, either the QPO disappears or its rms amplitude decreases significantly while the total rms amplitudes remain high. We discuss these results with a scenario including a variable corona and a non-variable disk with a mechanism for the QPO separate from the mechanism that creates broad components. Finally, we evaluated the timing predictions of the magnetically dominated accretion flow model that can explain the presence of tracks in the radio/X-ray luminosity relation.

  1. Two-Dimensional Bifurcated Inlet Variable Cowl Lip Test Completed in 10- by 10-Foot Supersonic Wind Tunnel

    NASA Technical Reports Server (NTRS)

    Hoffman, T. R.

    2000-01-01

    Researchers at the NASA Glenn Research Center at Lewis Field successfully tested a variable cowl lip inlet at simulated takeoff conditions in Glenn s 10- by 10-Foot Supersonic Wind Tunnel (10x10 SWT) as part of the High-Speed Research Program. The test was a follow-on to the Two-Dimensional Bifurcated (2DB) Inlet/Engine test. At the takeoff condition for a High-Speed Civil Transport aircraft, the inlet must provide adequate airflow to the engine with an acceptable distortion level and high-pressure recovery. The test was conducted to study the effectiveness of installing two rotating lips on the 2DB Inlet cowls to increase mass flow rate and eliminate or reduce boundary layer flow separation near the lips. Hardware was mounted vertically in the test section so that it extended through the tunnel ceiling and that the 2DB Inlet was exposed to the atmosphere above the test section. The tunnel was configured in the aerodynamic mode, and exhausters were used to pump down the tunnel to vacuum levels and to provide a maximum flow rate of approximately 58 lb/sec. The test determined the (1) maximum flow in the 2DB Inlet for each variable cowl lip, (2) distortion level and pressure recovery for each lip configuration, (3) boundary layer conditions near variable lips inside the 2DB Inlet, (4) effects of a wing structure adjacent to the 2DB Inlet, and (5) effects of different 2DB Inlet exit configurations. It also employed flow visualization to generate enough qualitative data on variable lips to optimize the variable lip concept. This test was a collaborative effort between the Boeing Company and Glenn. Extensive inhouse support at Glenn contributed significantly to the progress and accomplishment of this test.

  2. Water maser variability over 20 years in a large sample of star-forming regions: the complete database

    NASA Astrophysics Data System (ADS)

    Felli, M.; Brand, J.; Cesaroni, R.; Codella, C.; Comoretto, G.; Di Franco, S.; Massi, F.; Moscadelli, L.; Nesti, R.; Olmi, L.; Palagi, F.; Panella, D.; Valdettaro, R.

    2007-12-01

    Context: Water vapor emission at 22 GHz from masers associated with star-forming regions is highly variable. Aims: We present a database of up to 20 years of monitoring of a sample of 43 masers within star-forming regions. The sample covers a large range of luminosities of the associated IRAS source and is representative of the entire population of H2O masers of this type. The database forms a good starting point for any further study of H2O maser variability. Methods: The observations were obtained with the Medicina 32-m radiotelescope, at a rate of 4-5 observations per year. Results: To provide a database that can be easily accessed through the web, we give for each source: plots of the calibrated spectra, the velocity-time-flux density plot, the light curve of the integrated flux, the lower and upper envelopes of the maser emission, the mean spectrum, and the rate of the maser occurrence as a function of velocity. Figures for just one source are given in the text for representative purposes. Figures for all the sources are given in electronic form the appendix. A discussion of the main properties of the H2O variability in our sample will be presented in a forthcoming paper. Based on observations with the Medicina radiotelescope operated by INAF - Istituto di Radioastronomia.

  3. The Complete Mitochondrial Genomes of Six Heterodont Bivalves (Tellinoidea and Solenoidea): Variable Gene Arrangements and Phylogenetic Implications

    PubMed Central

    Yuan, Yang; Li, Qi; Yu, Hong; Kong, Lingfeng

    2012-01-01

    Background Taxonomy and phylogeny of subclass Heterodonta including Tellinoidea are long-debated issues and a complete agreement has not been reached yet. Mitochondrial (mt) genomes have been proved to be a powerful tool in resolving phylogenetic relationship. However, to date, only ten complete mitochondrial genomes of Heterodonta, which is by far the most diverse major group of Bivalvia, have been determined. In this paper, we newly sequenced the complete mt genomes of six species belonging to Heterodonta in order to resolve some problematical relationships among this subclass. Principal Findings The complete mt genomes of six species vary in size from 16,352 bp to 18,182. Hairpin-like secondary structures are found in the largest non-coding regions of six freshly sequenced mt genomes, five of which contain tandem repeats. It is noteworthy that two species belonging to the same genus show different gene arrangements with three translocations. The phylogenetic analysis of Heterodonta indicates that Sinonovacula constricta, distant from the Solecurtidae belonging to Tellinoidea, is as a sister group with Solen grandis of family Solenidae. Besides, all five species of Tellinoidea cluster together, while Sanguinolaria diphos has closer relationship with Solecurtus divaricatus, Moerella iridescens and Semele scaba rather than with Sanguinolaria olivacea. Conclusions/Significance By comparative study of gene order rearrangements and phylogenetic relationships of the five species belonging to Tellinoidea, our results support that comparisons of mt gene order rearrangements, to some extent, are a useful tool for phylogenetic studies. Based on phylogenetic analyses of multiple protein-coding genes, we prefer classifying the genus Sinonovacula within the superfamily Solenoidea and not the superfamily Tellinoidea. Besides, both gene order and sequence data agree that Sanguinolaria (Psammobiidae) is not monophyletic. Nevertheless, more studies based on more mt genomes via

  4. Complete amino acid sequence of the variable domains of two human IgM anti-gamma globulins (Lay/Pom) with shared idiotypic specificities.

    PubMed

    Capra, J D; Klapper, D G

    1976-01-01

    On the basis of extensive shared idiotypic specificities, two human IgM anti-gamma-globulins (Lay/Pom) were selected for complete amino acid sequence analysis of their variable domains. Previous studies on the variable regions of the heavy chains of these proteins had shown but eight amino acid differences, only one of which was within a complementarity-determining hypervariable region. The complete amino acid sequence of the variable regions of the light chains of these two proteins is the subject of this report. Protein Lay is a typical VchiI protein with only five 'framework' differences when compared with protein Roy. Protein Pom is best classified as a VchiII, but in the 'framework' there are 16 differences between it and protein Ti. Although there are extensive differences in the first hypervariable region, the second and third light-chain hypervariable regions have an identical sequence. The finding of two identical light-chain and two identical heavy-chain hypervariable regions in these two proteins, which were selected on the basis of their combining specificities and their idiotypic cross-reactions, strongly implicates hypervariable regions in the constitution of the idiotypic determinants and the antibody combining site. Additionally, the finding of identical hypervariable regions in light chains of different V-region subgroups fulfills a prediction of the gene-interaction concept of antibody variability. PMID:824717

  5. Molecular variability in the Celleporella hyalina (Bryozoa; Cheilostomata) species complex: evidence for cryptic speciation from complete mitochondrial genomes.

    PubMed

    Waeschenbach, Andrea; Porter, Joanne S; Hughes, Roger N

    2012-09-01

    The bryozoan Celleporella has been shown to be composed of multiple, often cryptic, lineages. We sequenced two complete mitochondrial (mt) genomes of the Celleporella hyalina species complex from Wales, UK and Norway (i) to determine genetic divergence at the complete mt genome level, and (ii) to design new molecular markers for examining the interrelationships amongst the major lineages. In addressing (i), we estimated genetic divergence at three levels: (a) nucleotide diversity (π), (b) genome size, and (c) gene order. Genes nad4L, nad6, and atp8 showed the highest levels of divergence, and rrnL, rrnS, and cox1 showed the lowest levels. Inter-genome nucleotide divergence of protein-coding and ribosomal RNA genes, measured as π, was 0.21. The two genomes differed substantially in size, with the Norwegian genome being 2,573 base pairs (bp) longer than the Welsh genome, 17,265 and 14,692 bp, respectively. This difference in size is attributable to long non-coding regions present in the Norwegian genome. Both genomes exhibit similar gene orders, except for the translocation of one transfer RNA (trnA). Considering the high nucleotide diversity, genome size difference and change in gene order, these mt genomes are considered sufficiently divergent to have originated from two distinct species. In addressing (ii) we designed PCR primers that flank the most conserved regions of the genome: 1,300 bp of cox1 and a contiguous 2,000 bp fragment of rrnL + rrnS. The primers have yielded products for tissue from Wales, Norway, New Zealand, Alaska and Chile and should provide useful tools in establishing species- and population-level diversity within the Celleporella complex.

  6. Testing the Pairs-Reflection Model with X-Ray Spectral Variability and X-Ray Properties of Complete Samples of Radio-Selected BL Lacertae Objects

    NASA Technical Reports Server (NTRS)

    Urry, C. Megan

    1997-01-01

    This grant was awarded to Dr. C. Megan Urry of the Space Telescope Science Institute in response to two successful ADP proposals to use archival Ginga and Rosat X-ray data for 'Testing the Pairs-Reflection model with X-Ray Spectral Variability' (in collaboration with Paola Grandi, now at the University of Rome) and 'X-Ray Properties of Complete Samples of Radio-Selected BL Lacertae Objects' (in collaboration with then-graduate student Rita Sambruna, now a post-doc at Goddard Space Flight Center). In addition, post-docs Joseph Pesce and Elena Pian, and graduate student Matthew O'Dowd, have worked on several aspects of these projects. The grant was originally awarded on 3/01/94; this report covers the full period, through May 1997. We have completed our project on the X-ray properties of radio-selected BL Lacs.

  7. Genomic cartography of varicella-zoster virus: a complete genome-based analysis of strain variability with implications for attenuation and phenotypic differences.

    PubMed

    Tyler, S D; Peters, G A; Grose, C; Severini, A; Gray, M J; Upton, C; Tipples, G A

    2007-03-15

    In order to gain a better perspective on the true variability of varicella-zoster virus (VZV) and to catalogue the location and number of differences, 11 new complete genome sequences were compared with those previously in the public domain (18 complete genomes in total). Three of the newly sequenced genomes were derived from a single strain in order to assess variations that can occur during serial passage in cell culture. The analysis revealed that while VZV is relatively stable genetically it does posses a certain degree of variability. The reiteration regions, origins of replication and intergenic homopolymer regions were all found to be variable between strains as well as within a given strain. In addition, the terminal viral sequences were found to vary within and between strains specifically at the 3' end of the genome. Analysis of single nucleotide polymorphisms (SNPs) identified a total of 557 variable sites, 451 of which were found in coding regions and resulted in 187 different in amino acid substitutions. A comparison of the SNPs present in the two gE mutant strains, VZV-MSP and VZV-BC, suggested that the missense mutation in gE was primarily responsible for the accelerated cell spread phenotype. Some of the variations noted with high passage in cell culture are consistent with variations seen in the IE62 gene of the vaccine strains (S628G, R958G and I1260V) that may help in pinpointing variations essential for attenuation. Although VZV has been considered to be one of the most genetically stable human herpesviruses, this initial assessment of genomic VZV cartography provides insight into ORFs with previously unreported variations.

  8. Closed-Loop Optogenetic Intervention in Mice

    PubMed Central

    Oijala, Mikko; Soltesz, Ivan

    2014-01-01

    Optogenetic interventions offer novel ways of probing, in a temporally specific manner, the roles of specific cell types in neuronal network functions of awake, behaving animals. Despite the unique potential for temporally specific optogenetic interventions in disease states, a major hurdle in its broad application to unpredictable brain states in a laboratory setting is constructing a real-time responsive system. We recently created a closed-loop system for stopping spontaneous seizures in chronically epileptic mice using optogenetic intervention. This system performs with very high sensitivity and specificity, and the strategy is relevant not only to epilepsy, but can also be used to react in real time, with optogenetic or other interventions, to diverse brain states. The protocol presented here is highly modular and requires variable time to perform. We describe the basic construction of a complete system, and include our downloadable custom closed-loop detection software which can be employed for this purpose. PMID:23845961

  9. Loop-to-loop coupling.

    SciTech Connect

    Warne, Larry Kevin; Lucero, Larry Martin; Langston, William L.; Salazar, Robert Austin; Coleman, Phillip Dale; Basilio, Lorena I.; Bacon, Larry Donald

    2012-05-01

    This report estimates inductively-coupled energy to a low-impedance load in a loop-to-loop arrangement. Both analytical models and full-wave numerical simulations are used and the resulting fields, coupled powers and energies are compared. The energies are simply estimated from the coupled powers through approximations to the energy theorem. The transmitter loop is taken to be either a circular geometry or a rectangular-loop (stripline-type) geometry that was used in an experimental setup. Simple magnetic field models are constructed and used to estimate the mutual inductance to the receiving loop, which is taken to be circular with one or several turns. Circuit elements are estimated and used to determine the coupled current and power (an equivalent antenna picture is also given). These results are compared to an electromagnetic simulation of the transmitter geometry. Simple approximate relations are also given to estimate coupled energy from the power. The effect of additional loads in the form of attached leads, forming transmission lines, are considered. The results are summarized in a set of susceptibility-type curves. Finally, we also consider drives to the cables themselves and the resulting common-to-differential mode currents in the load.

  10. Flight Testing of the Capillary Pumped Loop 3 Experiment

    NASA Technical Reports Server (NTRS)

    Ottenstein, Laura; Butler, Dan; Ku, Jentung; Cheung, Kwok; Baldauff, Robert; Hoang, Triem

    2002-01-01

    The Capillary Pumped Loop 3 (CAPL 3) experiment was a multiple evaporator capillary pumped loop experiment that flew in the Space Shuttle payload bay in December 2001 (STS-108). The main objective of CAPL 3 was to demonstrate in micro-gravity a multiple evaporator capillary pumped loop system, capable of reliable start-up, reliable continuous operation, and heat load sharing, with hardware for a deployable radiator. Tests performed on orbit included start-ups, power cycles, low power tests (100 W total), high power tests (up to 1447 W total), heat load sharing, variable/fixed conductance transition tests, and saturation temperature change tests. The majority of the tests were completed successfully, although the experiment did exhibit an unexpected sensitivity to shuttle maneuvers. This paper describes the experiment, the tests performed during the mission, and the test results.

  11. Long-term variability of a complete sample of flat-spectrum radio sources at declinations 10°-12°30' (J2000)

    NASA Astrophysics Data System (ADS)

    Gorshkov, A. G.; Konnikova, V. K.; Mingaliev, M. G.

    2012-05-01

    The paper reports the results of ten-year centimeter-wavelength observations with the RATAN-600 radio telescope of a complete sample of 83 flat-spectrum sources from the GB6 catalog of the MGB Survey, with S 4.85 > 200 mJy at declinations 10°-12°30'. Starting in 2000, the observations were conducted simultaneously at six frequencies in the range 0.97-21.7 GHz. Seventy-six sources (including 54 quasars) have been identified with optical objects, which have redshifts in the range z = 0.331-3.601. Analysis of light curves and spectra at different activity phases has shown that, in most cases, the dynamics of the development of flares is consistent with a model in which the variability results from the evolution of a shock in a radio jet. A relationship between the time scales for the rise and fall of the flares has been found. There is no redshift dependence of the true linear dimensions of the radiating regions and the variability indices obtained over ten years. These facts can be interpreted as an absence of cosmological evolution of quasars at least up to z ≈ 3.

  12. Wilson Loop Diagrams and Positroids

    NASA Astrophysics Data System (ADS)

    Agarwala, Susama; Marin-Amat, Eloi

    2016-07-01

    In this paper, we study a new application of the positive Grassmannian to Wilson loop diagrams (or MHV diagrams) for scattering amplitudes in N= 4 Super Yang-Mill theory (N = 4 SYM). There has been much interest in studying this theory via the positive Grassmannians using BCFW recursion. This is the first attempt to study MHV diagrams for planar Wilson loop calculations (or planar amplitudes) in terms of positive Grassmannians. We codify Wilson loop diagrams completely in terms of matroids. This allows us to apply the combinatorial tools in matroid theory used to identify positroids (non-negative Grassmannians) to Wilson loop diagrams. In doing so, we find that certain non-planar Wilson loop diagrams define positive Grassmannians. While non-planar diagrams do not have physical meaning, this finding suggests that they may have value as an algebraic tool, and deserve further investigation.

  13. Loop-bed combustion apparatus

    DOEpatents

    Shang, Jer-Yu; Mei, Joseph S.; Slagle, Frank D.; Notestein, John E.

    1984-01-01

    The present invention is directed to a combustion apparatus in the configuration of a oblong annulus defining a closed loop. Particulate coal together with a sulfur sorbent such as sulfur or dolomite is introduced into the closed loop, ignited, and propelled at a high rate of speed around the loop. Flue gas is withdrawn from a location in the closed loop in close proximity to an area in the loop where centrifugal force imposed upon the larger particulate material maintains these particulates at a location spaced from the flue gas outlet. Only flue gas and smaller particulates resulting from the combustion and innerparticle grinding are discharged from the combustor. This structural arrangement provides increased combustion efficiency due to the essentially complete combustion of the coal particulates as well as increased sulfur absorption due to the innerparticle grinding of the sorbent which provides greater particle surface area.

  14. Dynamical behaviour in coronal loops

    NASA Technical Reports Server (NTRS)

    Haisch, Bernhard M.

    1986-01-01

    Rapid variability has been found in two active region coronal loops observed by the X-ray Polychromator (XRP) and the Hard X-ray Imaging Spectrometer (HXIS) onboard the Solar Maximum Mission (SMM). There appear to be surprisingly few observations of the short-time scale behavior of hot loops, and the evidence presented herein lends support to the hypothesis that coronal heating may be impulsive and driven by flaring.

  15. High levels of genetic variability and differentiation in hilsa shad, Tenualosa ilisha (Clupeidae, Clupeiformes) populations revealed by PCR-RFLP analysis of the mitochondrial DNA D-loop region

    PubMed Central

    2009-01-01

    The hilsa shad, Tenualosa ilisha (Clupeidae, Clupeiformes) is an important anadromous clupeid species from the Western division of the Indo-Pacific region. It constitutes the largest single fishable species in Bangladesh. Information on genetic variability and population structure is very important for both management and conservation purposes. Past reports on the population structure of T. ilisha involving morphometric, allozyme and RAPD analyses are contradictory. We examined genetic variability and divergence in two riverine (the Jamuna and the Meghna), two estuarine (Kuakata and Sundarbans) and one marine (Cox's Bazar) populations of T. ilisha by applying PCR-RFLP analysis of the mtDNA D-loop region. The amplified PCR products were restricted with four restriction enzymes namely, XbaI, EcoRI, EcoRV, and HaeIII. High levels of haplotype and gene diversity within and significant differentiations among, populations of T. ilisha were observed in this study. Significant FST values indicated differentiation among the river, estuary and marine populations. The UPGMA dendrogram based on genetic distance resulted in two major clusters, although, these were subsequently divided into three, corresponding to the riverine, estuarine and marine populations. The study underlines the usefulness of RFLP of mtDNA D-loop region as molecular markers, and detected at least two differentiated populations of T. ilisha in Bangladesh waters. PMID:21637667

  16. All orders results for self-crossing Wilson loops mimicking double parton scattering

    DOE PAGES

    Dixon, Lance J.; Esterlis, Ilya

    2016-07-21

    Loop-level scattering amplitudes for massless particles have singularities in regions where tree amplitudes are perfectly smooth. For example, a 2 → 4 gluon scattering process has a singularity in which each incoming gluon splits into a pair of gluons, followed by a pair of 2 → 2 collisions between the gluon pairs. This singularity mimics double parton scattering because it occurs when the transverse momentum of a pair of outgoing gluons vanishes. The singularity is logarithmic at fixed order in perturbation theory. We exploit the duality between scattering amplitudes and polygonal Wilson loops to study six-point amplitudes in this limitmore » to high loop order in planar N = 4 super-Yang-Mills theory. The singular configuration corresponds to the limit in which a hexagonal Wilson loop develops a self-crossing. The singular terms are governed by an evolution equation, in which the hexagon mixes into a pair of boxes; the mixing back is suppressed in the planar (large N c) limit. Because the kinematic dependence of the box Wilson loops is dictated by (dual) conformal invariance, the complete kinematic dependence of the singular terms for the self-crossing hexagon on the one nonsingular variable is determined to all loop orders. The complete logarithmic dependence on the singular variable can be obtained through nine loops, up to a couple of constants, using a correspondence with the multi-Regge limit. As a byproduct, we obtain a simple formula for the leading logs to all loop orders. Furthermore, we also show that, although the MHV six-gluon amplitude is singular, remarkably, the transcendental functions entering the non-MHV amplitude are finite in the same limit, at least through four loops.« less

  17. All orders results for self-crossing Wilson loops mimicking double parton scattering

    NASA Astrophysics Data System (ADS)

    Dixon, Lance J.; Esterlis, Ilya

    2016-07-01

    Loop-level scattering amplitudes for massless particles have singularities in regions where tree amplitudes are perfectly smooth. For example, a 2 → 4 gluon scattering process has a singularity in which each incoming gluon splits into a pair of gluons, followed by a pair of 2 → 2 collisions between the gluon pairs. This singularity mimics double parton scattering because it occurs when the transverse momentum of a pair of outgoing gluons vanishes. The singularity is logarithmic at fixed order in perturbation theory. We exploit the duality between scattering amplitudes and polygonal Wilson loops to study six-point amplitudes in this limit to high loop order in planar {N} = 4 super-Yang-Mills theory. The singular configuration corresponds to the limit in which a hexagonal Wilson loop develops a self-crossing. The singular terms are governed by an evolution equation, in which the hexagon mixes into a pair of boxes; the mixing back is suppressed in the planar (large N c) limit. Because the kinematic dependence of the box Wilson loops is dictated by (dual) conformal invariance, the complete kinematic dependence of the singular terms for the self-crossing hexagon on the one nonsingular variable is determined to all loop orders. The complete logarithmic dependence on the singular variable can be obtained through nine loops, up to a couple of constants, using a correspondence with the multi-Regge limit. As a byproduct, we obtain a simple formula for the leading logs to all loop orders. We also show that, although the MHV six-gluon amplitude is singular, remarkably, the transcendental functions entering the non-MHV amplitude are finite in the same limit, at least through four loops.

  18. Selection of aminoacyl-tRNAs at sense codons: the size of the tRNA variable loop determines whether the immediate 3' nucleotide to the codon has a context effect.

    PubMed Central

    Curran, J F; Poole, E S; Tate, W P; Gross, B L

    1995-01-01

    Codon context can affect translational efficiency by several molecular mechanisms. The base stacking interactions between a codon-anticodon complex and the neighboring nucleotide immediately 3' can facilitate translation by amber suppressors and the tRNA structure is also known to modulate the sensitivity to context. In this study the relative rates of aminoacyl-tRNA selection were measured at four sense codons (UGG, CUC, UUC and UCA), in all four 3' nucleotide contexts, through direct competition with a programmed frameshift at a site derived from the release factor 2 gene. Two codons (UGG and UUC) are read by tRNAs with small variable regions and their rates of aminoacyl-tRNA selection correlated with the potential base stacking strength of the 3' neighboring nucleotide. The other two codons (CUC and UCA) are read by tRNAs with large variable regions and the rate of selection of the aminoacyl-tRNAs in these cases varied little among the four contexts. Re-examination of published data on amber suppression also revealed an inverse correlation between context sensitivity and the size of the variable region. Collectively the data suggest that a large variable loop in a tRNA decreases the influence of the 3' context on tRNA selection, probably by strengthening tRNA-ribosomal interactions. PMID:7479072

  19. Loop quantum cosmology of Bianchi type I models

    SciTech Connect

    Ashtekar, Abhay; Wilson-Ewing, Edward

    2009-04-15

    The ''improved dynamics'' of loop quantum cosmology is extended to include anisotropies of the Bianchi type I model. As in the isotropic case, a massless scalar field serves as a relational time parameter. However, the extension is nontrivial because one has to face several conceptual subtleties as well as technical difficulties. These include a better understanding of the relation between loop quantum gravity and loop quantum cosmology, handling novel features associated with the nonlocal field strength operator in presence of anisotropies, and finding dynamical variables that make the action of the Hamiltonian constraint manageable. Our analysis provides a conceptually complete description that overcomes limitations of earlier works. We again find that the big-bang singularity is resolved by quantum geometry effects but, because of the presence of Weyl curvature, Planck scale physics is now much richer than in the isotropic case. Since the Bianchi I models play a key role in the Belinskii, Khalatnikov, Lifshitz conjecture on the nature of generic spacelike singularities in general relativity, the quantum dynamics of Bianchi I cosmologies is likely to provide considerable intuition about the fate of generic spacelike singularities in quantum gravity. Finally, we show that the quantum dynamics of Bianchi I cosmologies projects down exactly to that of the Friedmann model. This opens a new avenue to relate more complicated models to simpler ones, thereby providing a new tool to relate the quantum dynamics of loop quantum gravity to that of loop quantum cosmology.

  20. Exploring the conformational diversity of loops on conserved frameworks.

    PubMed

    Li, W; Liang, S; Wang, R; Lai, L; Han, Y

    1999-12-01

    Loops are structurally variable regions, but the secondary structural elements bracing loops are often conserved. Motifs with similar secondary structures exist in the same and different protein families. In this study, we made an all-PDB-based analysis and produced 495 motif families accessible from the Internet. Every motif family contains some variable loops spanning a common framework (a pair of secondary structures). The diversity of loops and the convergence of frameworks were examined. In addition, we also identified 119 loops with conformational changes in different PDB files. These materials can give some directions for functional loop design and flexible docking. PMID:10611401

  1. Rollercoaster loop shapes

    NASA Astrophysics Data System (ADS)

    Pendrill, Ann-Marie

    2005-11-01

    Many modern rollercoasters feature loops. Although textbook loops are often circular, real rollercoaster loops are not. In this paper, we look into the mathematical description of various possible loop shapes, as well as their riding properties. We also discuss how a study of loop shapes can be used in physics education.

  2. Water Stream "Loop-the-Loop"

    ERIC Educational Resources Information Center

    Jefimenko, Oleg

    1974-01-01

    Discusses the design of a modified loop-the-loop apparatus in which a water stream is used to illustrate centripetal forces and phenomena of high-velocity hydrodynamics. Included are some procedures of carrying out lecture demonstrations. (CC)

  3. Quantum black holes in loop quantum gravity

    NASA Astrophysics Data System (ADS)

    Gambini, Rodolfo; Olmedo, Javier; Pullin, Jorge

    2014-05-01

    We study the quantization of spherically symmetric vacuum spacetimes within loop quantum gravity. In particular, we give additional details about our previous work in which we showed that one could complete the quantization of the model and that the singularity inside black holes is resolved. Moreover, we consider an alternative quantization based on a slightly different kinematical Hilbert space. The ambiguity in kinematical spaces stems from how one treats the periodicity of one of the classical variables in these models. The corresponding physical Hilbert spaces solve the diffeomorphism and Hamiltonian constraint but their intrinsic structure is radically different depending on the kinematical Hilbert space one started from. In both cases there are quantum observables that do not have a classical counterpart. However, one can show that at the end of the day, by examining Dirac observables, both quantizations lead to the same physical predictions.

  4. Vaccine induced antibodies to the first variable loop of human immunodeficiency virus type 1 gp120, mediate antibody-dependent virus inhibition in macaques.

    PubMed

    Bialuk, Izabela; Whitney, Stephen; Andresen, Vibeke; Florese, Ruth H; Nacsa, Janos; Cecchinato, Valentina; Valeri, Valerio W; Heraud, Jean-Michel; Gordon, Shari; Parks, Robyn Washington; Montefiori, David C; Venzon, David; Demberg, Thorsten; Guroff, Marjorie Robert-; Landucci, Gary; Forthal, Donald N; Franchini, Genoveffa

    2011-12-01

    The role of antibodies directed against the hyper variable envelope region V1 of human immunodeficiency virus type 1 (HIV-1), has not been thoroughly studied. We show that a vaccine able to elicit strain-specific non-neutralizing antibodies to this region of gp120 is associated with control of highly pathogenic chimeric SHIV(89.6P) replication in rhesus macaques. The vaccinated animal that had the highest titers of antibodies to the amino terminus portion of V1, prior to challenge, had secondary antibody responses that mediated cell killing by antibody-dependent cellular cytotoxicity (ADCC), as early as 2 weeks after infection and inhibited viral replication by antibody-dependent cell-mediated virus inhibition (ADCVI), by 4 weeks after infection. There was a significant inverse correlation between virus level and binding antibody titers to the envelope protein, (R=-0.83, p=0.015), and ADCVI (R=-0.84 p=0.044). Genotyping of plasma virus demonstrated in vivo selection of three SHIV(89.6P) variants with changes in potential N-linked glycosylation sites in V1. We found a significant inverse correlation between virus levels and titers of antibodies that mediated ADCVI against all the identified V1 virus variants. A significant inverse correlation was also found between neutralizing antibody titers to SHIV(89.6) and virus levels (R=-0.72 p=0.0050). However, passive inoculation of purified immunoglobulin from animal M316, the macaque that best controlled virus, to a naïve macaque, resulted in a low serum neutralizing antibodies and low ADCVI activity that failed to protect from SHIV(89.6P) challenge. Collectively, while our data suggest that anti-envelope antibodies with neutralizing and non-neutralizing Fc(R-dependent activities may be important in the control of SHIV replication, they also demonstrate that low levels of these antibodies alone are not sufficient to protect from infection.

  5. Look before You Loop.

    ERIC Educational Resources Information Center

    Bellis, Marilyn

    1999-01-01

    Explores looping, which involves one teacher staying with the same group of children for more than one year. Recognizes that, with today's changing demographics, looping can be a way to foster a family-like classroom atmosphere. Discusses advantages and disadvantages to looping. Includes a chart of looping opportunities and considerations;…

  6. Study of the Open Loop and Closed Loop Oscillator Techniques

    SciTech Connect

    Imel, George R.; Baker, Benjamin; Riley, Tony; Langbehn, Adam; Aryal, Harishchandra; Benzerga, M. Lamine

    2015-04-11

    This report presents the progress and completion of a five-year study undertaken at Idaho State University of the measurement of very small worth reactivity samples comparing open and closed loop oscillator techniques.The study conclusively demonstrated the equivalency of the two techniques with regard to uncertainties in reactivity values, i.e., limited by reactor noise. As those results are thoroughly documented in recent publications, in this report we will concentrate on the support work that was necessary. For example, we describe in some detail the construction and calibration of a pilot rod for the closed loop system. We discuss the campaign to measure the required reactor parameters necessary for inverse-kinetics. Finally, we briefly discuss the transfer of the open loop technique to other reactor systems.

  7. Fast flux locked loop

    DOEpatents

    Ganther, Jr., Kenneth R.; Snapp, Lowell D.

    2002-09-10

    A flux locked loop for providing an electrical feedback signal, the flux locked loop employing radio-frequency components and technology to extend the flux modulation frequency and tracking loop bandwidth. The flux locked loop of the present invention has particularly useful application in read-out electronics for DC SQUID magnetic measurement systems, in which case the electrical signal output by the flux locked loop represents an unknown magnetic flux applied to the DC SQUID.

  8. OPE for super loops

    NASA Astrophysics Data System (ADS)

    Sever, Amit; Vieira, Pedro; Wang, Tianheng

    2011-11-01

    We extend the Operator Product Expansion for Null Polygon Wilson loops to the Mason-Skinner-Caron-Huot super loop dual to non MHV gluon amplitudes. We explain how the known tree level amplitudes can be promoted into an infinite amount of data at any loop order in the OPE picture. As an application, we re-derive all one loop NMHV six gluon amplitudes by promoting their tree level expressions. We also present some new all loops predictions for these amplitudes.

  9. The preprocessed doacross loop

    NASA Technical Reports Server (NTRS)

    Saltz, Joel H.; Mirchandaney, Ravi

    1990-01-01

    Dependencies between loop iterations cannot always be characterized during program compilation. Doacross loops typically make use of a-priori knowledge of inter-iteration dependencies to carry out required synchronizations. A type of doacross loop is proposed that allows the scheduling of iterations of a loop among processors without advance knowledge of inter-iteration dependencies. The method proposed for loop iterations requires that parallelizable preprocessing and postprocessing steps be carried out during program execution.

  10. Variability in Risk Assessment and Management Plan (RAMP) scores completed as part of the Ontario Johne's Education and Management Assistance Program(2010-2013).

    PubMed

    Pieper, Laura; DeVries, Trevor J; Sorge, Ulrike S; Godkin, Ann; Hand, Karen J; Perkins, Nicole R; Imada, Jamie; Kelton, David F

    2015-04-01

    As a proactive measure toward controlling the nontreatable and contagious Johne's disease in cattle, the Ontario dairy industry launched the voluntary Ontario Johne's Education and Management Assistance Program in 2010. The objective of this study was to describe the results of the first 4 yr of the program and to investigate the variability in Risk Assessment and Management Plan (RAMP) scores associated with the county, veterinary clinic, and veterinarian. Of 4,158 Ontario dairy farms, 2,153 (51.8%) participated in the program between January 2010 and August 2013. For this study, RAMP scores and whole-herd milk or serum ELISA results were available from 2,103 farms. Herd-level ELISA-positive prevalence (herds with one or more test-positive cows were considered positive) was 27.2%. Linear mixed model analysis revealed that the greatest RAMP score variability was at the veterinarian level (24.2%), with relatively little variability at the county and veterinary clinic levels. Consequently, the annual RAMP should be done by the same veterinarian to avoid misleading or discouraging results. PMID:25648804

  11. COLD TEST LOOP INTEGRATED TEST LOOP RESULTS

    SciTech Connect

    Abraham, TJ

    2003-10-22

    A testing facility (Cold Test Loop) was constructed and operated to demonstrate the efficacy of the Accelerated Waste Retrieval (AWR) Project's planned sluicing approach to the remediation of Silos 1 and 2 at the Fernald Environmental Management Project near Cincinnati, Ohio. The two silos contain almost 10,000 tons of radium-bearing low-level waste, which consists primarily of solids of raffinates from processing performed on ores from the Democratic Republic of Congo (commonly referred to as ''Belgium Congo ores'') for the recovery of uranium. These silos are 80 ft in diameter, 36 ft high to the center of the dome, and 26.75 ft to the top of the vertical side walls. The test facility contained two test systems, each designed for a specific purpose. The first system, the Integrated Test Loop (ITL), a near-full-scale plant including the actual equipment to be installed at the Fernald Site, was designed to demonstrate the sluicing operation and confirm the selection of a slurry pump, the optimal sluicing nozzle operation, and the preliminary design material balance. The second system, the Component Test Loop (CTL), was designed to evaluate many of the key individual components of the waste retrieval system over an extended run. The major results of the initial testing performed during July and August 2002 confirmed that the AWR approach to sluicing was feasible. The ITL testing confirmed the following: (1) The selected slurry pump (Hazleton 3-20 type SHW) performed well and is suitable for AWR application. However, the pump's motor should be upgraded to a 200-hp model and be driven by a 150-hp variable-frequency drive (VFD). A 200-hp VFD is not much more expensive and would allow the pump to operate at full speed. (2) The best nozzle performance was achieved by using 15/16-in. nozzles operated alternately. This configuration appeared to most effectively mine the surrogate. (3) The Solartron densitometer, which was tested as an alternative mass flow measurement

  12. Improved determination of dynamic balance using the centre of mass and centre of pressure inclination variables in a complete golf swing cycle.

    PubMed

    Choi, Ahnryul; Sim, Taeyong; Mun, Joung Hwan

    2016-01-01

    Golf requires proper dynamic balance to accurately control the club head through a harmonious coordination of each human segment and joint. In this study, we evaluated the ability for dynamic balance during a golf swing by using the centre of mass (COM)-centre of pressure (COP) inclination variables. Twelve professional, 13 amateur and 10 novice golfers participated in this study. Six infrared cameras, two force platforms and SB-Clinic software were used to measure the net COM and COP trajectories. In order to evaluate dynamic balance ability, the COM-COP inclination angle, COM-COP inclination angular velocity and normalised COM-COP inclination angular jerk were used. Professional golfer group revealed a smaller COM-COP inclination angle and angular velocity than novice golfer group in the lead/trail direction (P < 0.01). In the normalised COM-COP inclination angular jerk, the professional golfer group showed a lower value than the other two groups in all directions. Professional golfers tend to exhibit improved dynamic balance, and this can be attributed to the neuromusculoskeletal system that maintains balance with proper postural control. This study has the potential to allow for an evaluation of the dynamic balance mechanism and will provide useful basic information for swing training and prevention of golf injuries.

  13. Improved determination of dynamic balance using the centre of mass and centre of pressure inclination variables in a complete golf swing cycle.

    PubMed

    Choi, Ahnryul; Sim, Taeyong; Mun, Joung Hwan

    2016-01-01

    Golf requires proper dynamic balance to accurately control the club head through a harmonious coordination of each human segment and joint. In this study, we evaluated the ability for dynamic balance during a golf swing by using the centre of mass (COM)-centre of pressure (COP) inclination variables. Twelve professional, 13 amateur and 10 novice golfers participated in this study. Six infrared cameras, two force platforms and SB-Clinic software were used to measure the net COM and COP trajectories. In order to evaluate dynamic balance ability, the COM-COP inclination angle, COM-COP inclination angular velocity and normalised COM-COP inclination angular jerk were used. Professional golfer group revealed a smaller COM-COP inclination angle and angular velocity than novice golfer group in the lead/trail direction (P < 0.01). In the normalised COM-COP inclination angular jerk, the professional golfer group showed a lower value than the other two groups in all directions. Professional golfers tend to exhibit improved dynamic balance, and this can be attributed to the neuromusculoskeletal system that maintains balance with proper postural control. This study has the potential to allow for an evaluation of the dynamic balance mechanism and will provide useful basic information for swing training and prevention of golf injuries. PMID:26264189

  14. SP-100 liquid metal test loop design

    NASA Astrophysics Data System (ADS)

    Fallas, T. Ted; Kruger, Gordon B.; Wiltshire, Frank R.; Jensen, Grant C.; Clay, Harold; Upton, Hugh A.; Gamble, Robert E.; Kjaer-Olsen, Christian; Lee, Keith

    1992-01-01

    The SP-100 Power System Qualification (PSO) program validates the technology readiness of the SP-100 Generic Flight System (GFS). As part of the PSQ, the GFS reactor, heat transport and power generation systems are being validated, by test, in high temperature liquid metal test loops. The liquid metal test loop program consists of two test loops. The first, a natural circulation material test loop (MTL), has been successfully operating for the last year at GE's test facility in San Jose. The second, a forced circulation Component Test Loop (CTL) is in the preliminary design phase. Fabrication of the CTL and modifications to the Test Facility will be completed in FY94 with component testing scheduled to begin in FY95. The CTL is a Nb-1Zr test loop with an Electromagnetic (EM) pump providing forced circulation for the liquid lithium coolant. The CTL test program is comprised of a series of individual component tests. Test components containing thermoelectric cells will have their cold side ducts piped to an existing heat rejection loop external to the CTL vacuum vessel. The test assembly and test components are being designed by GE. The detail design of several loop components is being performed by Westinghouse Atomic Energy Systems (WAES). The CTL will be assembled and the test performed at GE's facilties in San Jose, California.

  15. Comparison of the complete sequences of three different isolates of Pepino mosaic virus: size variability of the TGBp3 protein between tomato and L. peruvianum isolates.

    PubMed

    López, C; Soler, S; Nuez, F

    2005-03-01

    The complete nucleotide sequence of the genomes of two Spanish isolates (LE-2000 and LE-2002) from tomato and one Peruvian isolate (LP-2001) from Lycopersicon peruvianum of the Pepino mosaic virus (PepMV) were determined. The tomato isolates share identities higher than 99%, while the genome of LP-2001 had mean nucleotide identities of 95.6% to 96.0% with tomato isolates. The predicted amino acid sequences showed similarities ranging between 95.2% and 100% with TGBp3 and TGBp2 and CP proteins, respectively. In LP-2001 two main differences were found with respect to the tomato isolates; (i) the 5' untranslated region (UTR) was 2 nt shorter by deletion at position 12-13 and it had some polymorphims at the putative promoter sequence reported for PepMV tomato isolates and other potexviruses, which could be functionally significant for RNA replication, and (ii) the TGBp3 protein had two extra amino acids in the C-terminal region.

  16. Loop quantum cosmology from quantum reduced loop gravity

    NASA Astrophysics Data System (ADS)

    Alesci, Emanuele; Cianfrani, Francesco

    2015-08-01

    We show how loop quantum cosmology can be derived as an effective semiclassical description of loop quantum gravity. Using the tools of QRLG, a gauge fixed version of LQG, we take the coherent states of the fundamental microscopic theory suitable to describe a Bianchi I Universe and we find a mapping between the expectation value of the Hamiltonian and the dynamics of LQC. Our results are in agreement with a lattice refinement framework for LQC, thus the so-called “old” and “improved-dynamics” regularization schemes can be reproduced. These amount to different choices of relations between local variables and the smeared ones entering the definition of the coherent states. The leading order of the fundamental theory corresponds to LQC, but we also find different inverse volume corrections, that depend on a purely quantum observable, namely the number of nodes of the states.

  17. Higgs boson mass in the Standard Model at two-loop order and beyond

    SciTech Connect

    Martin, Stephen P.; Robertson, David G.

    2014-10-23

    We calculate the mass of the Higgs boson in the standard model in terms of the underlying Lagrangian parameters at complete 2-loop order with leading 3-loop corrections. A computer program implementing the results is provided. The program also computes and minimizes the standard model effective potential in Landau gauge at 2-loop order with leading 3-loop corrections.

  18. Practice Variability and Outcomes of Coil Embolization of Aortopulmonary Collaterals Prior to Fontan Completion: A Report from the Pediatric Heart Network Fontan Cross-Sectional Study

    PubMed Central

    Banka, Puja; Sleeper, Lynn A.; Atz, Andrew M.; Cowley, Collin G.; Gallagher, Dianne; Gillespie, Matthew J.; Graham, Eric M.; Margossian, Renee; McCrindle, Brian W.; Sang, Charlie J.; Williams, Ismee A.; Newburger, Jane W.

    2011-01-01

    Background The practice of coiling APCs before Fontan completion is controversial and published data are limited. We sought to compare outcomes in subjects with and without pre-Fontan coil embolization of aortopulmonary collaterals (APCs) using the Pediatric Heart Network (PHN) Fontan Cross-Sectional Study database which enrolled survivors of prior Fontan palliation. Methods We compared hospital length of stay (LOS) after Fontan in 80 subjects who underwent APC coiling with 459 subjects who did not. Secondary outcomes included post-Fontan complications and assessment of health status and ventricular performance at cross-sectional evaluation (mean 8.6±3.4 years after Fontan). Results Centers varied markedly in frequency of pre-Fontan APC coiling (range 0-30% of subjects, p<0.001). The coil group was older at Fontan (p=0.004), and more likely to have single right ventricular morphology (p=0.054) and pre-Fontan atrioventricular valve regurgitation (p=0.03). The coil group underwent Fontan surgery more recently (p<0.001), was more likely to have a prior superior cavopulmonary anastomosis (p<0.001), and more likely to undergo extracardiac Fontan connection (p<0.001) and surgical fenestration (p<0.001). In multivariable analyses, APC coiling was not associated with LOS (hazard ratio (HR) for remaining in-hospital 0.91, 95% CI 0.70-1.18, p=0.48) or postoperative complications, except more post-Fontan catheter interventions (HR 1.74, 95% CI 1.04-2.91, p=0.03), primarily additional APC coils. The groups had similar outcomes at cross-sectional evaluation. Conclusion Management of APCs before Fontan shows marked practice variation. We did not find an association between pre-Fontan coiling of APCs and shorter post-operative hospital stay or with better late outcomes. Prospective studies of this practice are needed. PMID:21742098

  19. On vanishing two loop cosmological constants in nonsupersymmetric strings

    SciTech Connect

    Kachru, Shamit; Silverstein, Eva

    1998-10-16

    It has recently been suggested that in certain special nonsupersymmetric type II string compactifications, at least the first two perturbative contributions to the cosmological constant {Lambda} vanish. Support for perturbative vanishing beyond 1-loop (as well as evidence for the absence of some nonperturbative contributions) has come from duality arguments. There was also a direct 2-loop computation which was incomplete; in this note we explain the deficiency of the previous 2-loop calculation and discuss the complete 2-loop computation in two different models. The corrected analysis yields a vanishing 2-loop contribution to {Lambda} in these models.

  20. Three-loop hard-thermal-loop free energy for QED

    SciTech Connect

    Andersen, Jens O.; Strickland, Michael; Su, Nan

    2009-10-15

    We calculate the free energy of a hot gas of electrons and photons to three loops using the hard-thermal-loop perturbation theory reorganization of finite-temperature perturbation theory. We calculate the free energy through three loops by expanding in a power series in m{sub D}/T, m{sub f}/T, and e{sup 2}, where m{sub D} and m{sub f} are thermal masses and e is the coupling constant. We demonstrate that the hard-thermal-loop perturbation reorganization improves the convergence of the successive approximations to the QED free energy at large coupling, e{approx}2. The reorganization is gauge invariant by construction, and due to cancellation among various contributions, we obtain a completely analytic result for the resummed thermodynamic potential at three loops. Finally, we compare our result with similar calculations that use the {phi}-derivable approach.

  1. Separation and partial characterization of proteinases with substrate specificity for basic amino acids from human MOLT-4 T lymphocytes: identification of those inhibited by variable-loop-V3 peptides of HIV-1 (human immunodeficiency virus-1) envelope glycoprotein.

    PubMed Central

    Harvima, I T; Harvima, R J; Nilsson, G; Ivanoff, L; Schwartz, L B

    1993-01-01

    The V3 loop of the HIV (human immunodeficiency virus)-1 envelope glycoprotein gp120 likely plays a role in HIV-1 infectivity. Although the amino acid sequence of the V3 loop is hypervariable, it contains a conserved region, Gly-Pro-Gly-Arg, that shows similarity to the active-site Gly-Pro-Cys-Arg sequence of inter-alpha-trypsin and trypstatin proteinase inhibitors. The purpose of the present work was to identify proteinases recognizing substrates with basic amino acids in the P1 substrate site that are present in MOLT-4 cells, a human CD4-positive T helper lymphocyte cell line, and to characterize these enzymes in terms of substrate, pH and ionic-strength preferences, size and susceptibility to various inhibitors, including 24- and 36-amino-acid-long V3 loop peptides. Extraction of MOLT-4 cells at low ionic strength solubilized nearly all of the trypsin-like activity, which was separable into five peaks of activity by chromatography on Mono-Q: Peaks 1, 2a, 2b, 3 and 4. All showed a neutral pH optimum, and all except Peak 4 showed optimal activity at high ionic strength. Peak 1 preferred Tos-Gly-Pro-Arg, p-nitroanilide (-pNA) substrate; Peaks 2-4 preferred benzyloxycarbonyl-Val-Leu-Gly-Arg-pNA. Peak 1, a zinc-dependent enzyme with serine and histidine in the active site, exhibited an M(r) of 75,000 on Superose 12 and was poorly inhibited by V3 loop peptides. Peak 2 contained two overlapping peaks, called 2a and 2b, that exhibited properties of zinc-dependent metalloproteinases. Gel filtration of Peak 2 activities revealed a major peak of activity at 81 kDa and a shoulder centred at 240 kDa. Each was modestly inhibited by V3 loop peptides. Peak 3, a zinc-dependent proteinase, exhibited a molecular mass of 100 kDa by gel filtration and was particularly sensitive to inhibition by V3 loop peptides. Peak 4 exhibited a molecular mass of 1100 kDa by gel filtration and was not inhibited by V3 loop peptides. None of these enzymes could be classified as mast-cell tryptase

  2. Complete prewetting

    NASA Astrophysics Data System (ADS)

    Yatsyshin, P.; Parry, A. O.; Kalliadasis, S.

    2016-07-01

    We study continuous interfacial transitions, analagous to two-dimensional complete wetting, associated with the first-order prewetting line, which can occur on steps, patterned walls, grooves and wedges, and which are sensitive to both the range of the intermolecular forces and interfacial fluctuation effects. These transitions compete with wetting, filling and condensation producing very rich phase diagrams even for relatively simple prototypical geometries. Using microscopic classical density functional theory to model systems with realistic Lennard-Jones fluid–fluid and fluid–substrate intermolecular potentials, we compute mean-field fluid density profiles, adsorption isotherms and phase diagrams for a variety of confining geometries.

  3. a Computable Framework for Loop Quantum Gravity

    NASA Astrophysics Data System (ADS)

    Husain, Viqar; Pawłowski, Tomasz

    2015-01-01

    We present a non-perturbative quantization of general relativity coupled to dust and other matter fields. The dust provides a natural time variable, leading to a physical Hamiltonian with spatial diffeomorphism symmetry. The methods of loop quantum gravity applied to this model lead to a physical Hilbert space and Hamiltonian. This provides a framework for physical calculations in the theory.

  4. Completely bootstrapped tokamak

    SciTech Connect

    Weening, R.H. ); Boozer, A.H. )

    1992-01-01

    Numerical simulations of the evolution of large-scale magnetic fields have been developed using a mean-field Ohm's law. The Ohm's law is coupled to a {Delta}{prime} stabilty analysis and a magnetic island growth equation in order to simulate the behavior of tokamak plasmas that are subject to tearing modes. In one set of calculations, the magnetohydrodynamic (MHD)-stable regime of the tokamak is examined via the construction of an {ital l}{sub {ital i}} -{ital q}{sub {ital a}} diagram. The results confirm previous calculations that show that tearing modes introduce a stability boundary into the {ital l}{sub {ital i}} -{ital q}{sub {ital a}} space. In another series of simulations, the interaction between tearing modes and the bootstrap current is investigated. The results indicate that a completely bootstrapped tokamak may be possible, even in the absence of any externally applied loop voltage or current drive.

  5. Thermal power loops

    NASA Technical Reports Server (NTRS)

    Gottschlich, Joseph M.; Richter, Robert

    1991-01-01

    The concept of a thermal power loop (TPL) to transport thermal power over relatively large distances is presented as an alternative to heat pipes and their derivatives. The TPL is compared to heat pipes, and capillary pumped loops with respect to size, weight, conservation of thermal potential, start-up, and 1-g testing capability. Test results from a proof of feasibility demonstrator at the NASA JPL are discussed. This analysis demonstrates that the development of specific thermal power loops will result in substantial weight and cost savings for many spacecraft.

  6. Multiprotein DNA Looping

    NASA Astrophysics Data System (ADS)

    Vilar, Jose M. G.; Saiz, Leonor

    2006-06-01

    DNA looping plays a fundamental role in a wide variety of biological processes, providing the backbone for long range interactions on DNA. Here we develop the first model for DNA looping by an arbitrarily large number of proteins and solve it analytically in the case of identical binding. We uncover a switchlike transition between looped and unlooped phases and identify the key parameters that control this transition. Our results establish the basis for the quantitative understanding of fundamental cellular processes like DNA recombination, gene silencing, and telomere maintenance.

  7. Natively Unstructured Loops Differ from Other Loops

    PubMed Central

    Schlessinger, Avner; Liu, Jinfeng; Rost, Burkhard

    2007-01-01

    Natively unstructured or disordered protein regions may increase the functional complexity of an organism; they are particularly abundant in eukaryotes and often evade structure determination. Many computational methods predict unstructured regions by training on outliers in otherwise well-ordered structures. Here, we introduce an approach that uses a neural network in a very different and novel way. We hypothesize that very long contiguous segments with nonregular secondary structure (NORS regions) differ significantly from regular, well-structured loops, and that a method detecting such features could predict natively unstructured regions. Training our new method, NORSnet, on predicted information rather than on experimental data yielded three major advantages: it removed the overlap between testing and training, it systematically covered entire proteomes, and it explicitly focused on one particular aspect of unstructured regions with a simple structural interpretation, namely that they are loops. Our hypothesis was correct: well-structured and unstructured loops differ so substantially that NORSnet succeeded in their distinction. Benchmarks on previously used and new experimental data of unstructured regions revealed that NORSnet performed very well. Although it was not the best single prediction method, NORSnet was sufficiently accurate to flag unstructured regions in proteins that were previously not annotated. In one application, NORSnet revealed previously undetected unstructured regions in putative targets for structural genomics and may thereby contribute to increasing structural coverage of large eukaryotic families. NORSnet found unstructured regions more often in domain boundaries than expected at random. In another application, we estimated that 50%–70% of all worm proteins observed to have more than seven protein–protein interaction partners have unstructured regions. The comparative analysis between NORSnet and DISOPRED2 suggested that long

  8. Natively unstructured loops differ from other loops.

    PubMed

    Schlessinger, Avner; Liu, Jinfeng; Rost, Burkhard

    2007-07-01

    Natively unstructured or disordered protein regions may increase the functional complexity of an organism; they are particularly abundant in eukaryotes and often evade structure determination. Many computational methods predict unstructured regions by training on outliers in otherwise well-ordered structures. Here, we introduce an approach that uses a neural network in a very different and novel way. We hypothesize that very long contiguous segments with nonregular secondary structure (NORS regions) differ significantly from regular, well-structured loops, and that a method detecting such features could predict natively unstructured regions. Training our new method, NORSnet, on predicted information rather than on experimental data yielded three major advantages: it removed the overlap between testing and training, it systematically covered entire proteomes, and it explicitly focused on one particular aspect of unstructured regions with a simple structural interpretation, namely that they are loops. Our hypothesis was correct: well-structured and unstructured loops differ so substantially that NORSnet succeeded in their distinction. Benchmarks on previously used and new experimental data of unstructured regions revealed that NORSnet performed very well. Although it was not the best single prediction method, NORSnet was sufficiently accurate to flag unstructured regions in proteins that were previously not annotated. In one application, NORSnet revealed previously undetected unstructured regions in putative targets for structural genomics and may thereby contribute to increasing structural coverage of large eukaryotic families. NORSnet found unstructured regions more often in domain boundaries than expected at random. In another application, we estimated that 50%-70% of all worm proteins observed to have more than seven protein-protein interaction partners have unstructured regions. The comparative analysis between NORSnet and DISOPRED2 suggested that long

  9. Introduction to Loop Heat Pipes

    NASA Technical Reports Server (NTRS)

    Ku, Jentung

    2015-01-01

    This is the presentation file for the short course Introduction to Loop Heat Pipes, to be conducted at the 2015 Thermal Fluids and Analysis Workshop, August 3-7, 2015, Silver Spring, Maryland. This course will discuss operating principles and performance characteristics of a loop heat pipe. Topics include: 1) pressure profiles in the loop; 2) loop operating temperature; 3) operating temperature control; 4) loop startup; 4) loop shutdown; 5) loop transient behaviors; 6) sizing of loop components and determination of fluid inventory; 7) analytical modeling; 8) examples of flight applications; and 9) recent LHP developments.

  10. Blind loop syndrome

    MedlinePlus

    ... operations for extreme obesity As a complication of inflammatory bowel disease Diseases such as diabetes or scleroderma may slow down movement in a segment of the intestine, leading to blind loop syndrome.

  11. Choking loops on surfaces.

    PubMed

    Feng, Xin; Tong, Yiying

    2013-08-01

    We present a method for computing "choking" loops--a set of surface loops that describe the narrowing of the volumes inside/outside of the surface and extend the notion of surface homology and homotopy loops. The intuition behind their definition is that a choking loop represents the region where an offset of the original surface would get pinched. Our generalized loops naturally include the usual 2g handles/tunnels computed based on the topology of the genus-g surface, but also include loops that identify chokepoints or bottlenecks, i.e., boundaries of small membranes separating the inside or outside volume of the surface into disconnected regions. Our definition is based on persistent homology theory, which gives a measure to topological structures, thus providing resilience to noise and a well-defined way to determine topological feature size. More precisely, the persistence computed here is based on the lower star filtration of the interior or exterior 3D domain with the distance field to the surface being the associated 3D Morse function. PMID:23744260

  12. Wald entropy formula and loop quantum gravity

    NASA Astrophysics Data System (ADS)

    Bodendorfer, N.; Neiman, Y.

    2014-10-01

    We outline how the Wald entropy formula naturally arises in loop quantum gravity based on recently introduced dimension-independent connection variables. The key observation is that in a loop quantization of a generalized gravity theory, the analog of the area operator turns out to measure, morally speaking, the Wald entropy rather than the area. We discuss the explicit example of (higher-dimensional) Lanczos-Lovelock gravity and comment on recent work on finding the correct numerical prefactor of the entropy by comparing it to a semiclassical effective action.

  13. The plasma and magnetic field properties of coronal loops observed at high spatial resolution

    NASA Technical Reports Server (NTRS)

    Webb, D. F.; Holman, G. D.; Davis, J. M.; Kundu, M. R.; Shevgaonkar, R. K.

    1987-01-01

    Two data sets are analyzed in order to improve understanding of the plasma and magnetic field properties of active region coronal loops. Each set consists of coaligned, high spatial resolution soft X-ray, microwave, and magnetogram images that are used to compare observations of coronal loops and their feet in the photosphere and to constrain possible microwave emission mechanisms. The loops are found to have plasma parameters typical of quiescent active region loops. Each loop has a compact microwave source with peak brightness temperature T(b) = 1-2.5 x 10 to the 6th K cospatial with or near the loop apex. No complete loops are imaged in microwaves. The loop emission observed at 4.9 GHz is best described by fourth harmonic gyroresonance emission from a dipole loop model, but with less field variation along the loop than in the models of Holman and Kundu (1985).

  14. Variability for Categorical Variables

    ERIC Educational Resources Information Center

    Kader, Gary D.; Perry, Mike

    2007-01-01

    Introductory statistics textbooks rarely discuss the concept of variability for a categorical variable and thus, in this case, do not provide a measure of variability. The impression is thus given that there is no measurement of variability for a categorical variable. A measure of variability depends on the concept of variability. Research has…

  15. Loop quantum Brans-Dicke cosmology

    NASA Astrophysics Data System (ADS)

    Zhang, Xiangdong; Artymowski, Michal; Ma, Yongge

    2013-04-01

    The spatially flat and isotropic cosmological model of Brans-Dicke theory with coupling parameter ω≠-(3)/(2) is quantized by the approach of loop quantum cosmology. An interesting feature of this model is that although the Brans-Dicke scalar field is nonminimally coupled with curvature, it can still play the role of an emergent time variable. In the quantum theory, the classical differential equation which represents cosmological evolution is replaced by a quantum difference equation. The effective Hamiltonian and modified dynamical equations of loop quantum Brans-Dicke cosmology are also obtained, which lay a foundation for the phenomenological investigation to possible quantum gravity effects in cosmology. The effective equations indicate that the classical big bang singularity is again replaced by a quantum bounce in loop quantum Brans-Dicke cosmology.

  16. Electomagnetic field due to a non-axisymmetric current loop around Kerr blackhole

    NASA Astrophysics Data System (ADS)

    Pandey, U. S.; Dubey, G. S.

    1983-12-01

    The authors derive expressions for the electromagnetic field of a non-axisymmetric current loop around a Kerr blackhole. Complete solution for the "inside" as well as the "outside" regions of the current loop are determined using vacuum solutions of King (1977). A particular solution, the electromagnetic field of an equatorial current loop, is explicitly derived.

  17. The Anderson Current Loop

    NASA Technical Reports Server (NTRS)

    Anderson, Karl F.

    1994-01-01

    Four-wire-probe concept applied to electrical-resistance transducers. Anderson current loop is excitation-and-signal-conditioning circuit suitable for use with strain gauges, resistance thermometers, and other electrical-resistance transducers mounted in harsh environments. Used as alternative to Wheatstone bridge. Simplifies signal-conditioning problem, enabling precise measurement of small changes in resistance of transducer. Eliminates some uncertainties in Wheatstone-bridge resistance-change measurements in flight research. Current loop configuration makes effects of lead-wire and contact resistances insignificantly small. Also provides output voltage that varies linearly with change in gauge resistance, and does so at double sensitivity of Wheatstone bridge.

  18. Wilson-loop instantons

    NASA Technical Reports Server (NTRS)

    Lee, Kimyeong; Holman, Richard; Kolb, Edward W.

    1987-01-01

    Wilson-loop symmetry breaking is considered on a space-time of the form M4 x K, where M4 is a four-dimensional space-time and K is an internal space with nontrivial and finite fundamental group. It is shown in a simple model that the different vacua obtained by breaking a non-Abelian gauge group by Wilson loops are separated in the space of gauge potentials by a finite energy barrier. An interpolating gauge configuration is then constructed between these vacua and shown to have minimum energy. Finally some implications of this construction are discussed.

  19. Loop quantum gravity

    NASA Astrophysics Data System (ADS)

    Chiou, Dah-Wei

    2015-12-01

    This paper presents an "in-a-nutshell" yet self-contained introductory review on loop quantum gravity (LQG) — a background-independent, nonperturbative approach to a consistent quantum theory of gravity. Instead of rigorous and systematic derivations, it aims to provide a general picture of LQG, placing emphasis on the fundamental ideas and their significance. The canonical formulation of LQG, as the central topic of the paper, is presented in a logically orderly fashion with moderate details, while the spin foam theory, black hole thermodynamics, and loop quantum cosmology are covered briefly. Current directions and open issues are also summarized.

  20. Hybrid Combustion-Gasification Chemical Looping

    SciTech Connect

    Herbert Andrus; Gregory Burns; John Chiu; Gregory Lijedahl; Peter Stromberg; Paul Thibeault

    2009-01-07

    For the past several years Alstom Power Inc. (Alstom), a leading world-wide power system manufacturer and supplier, has been in the initial stages of developing an entirely new, ultra-clean, low cost, high efficiency power plant for the global power market. This new power plant concept is based on a hybrid combustion-gasification process utilizing high temperature chemical and thermal looping technology The process consists of the oxidation, reduction, carbonation, and calcination of calcium-based compounds, which chemically react with coal, biomass, or opportunity fuels in two chemical loops and one thermal loop. The chemical and thermal looping technology can be alternatively configured as (i) a combustion-based steam power plant with CO{sub 2} capture, (ii) a hybrid combustion-gasification process producing a syngas for gas turbines or fuel cells, or (iii) an integrated hybrid combustion-gasification process producing hydrogen for gas turbines, fuel cells or other hydrogen based applications while also producing a separate stream of CO{sub 2} for use or sequestration. In its most advanced configuration, this new concept offers the promise to become the technology link from today's Rankine cycle steam power plants to tomorrow's advanced energy plants. The objective of this work is to develop and verify the high temperature chemical and thermal looping process concept at a small-scale pilot facility in order to enable AL to design, construct and demonstrate a pre-commercial, prototype version of this advanced system. In support of this objective, Alstom and DOE started a multi-year program, under this contract. Before the contract started, in a preliminary phase (Phase 0) Alstom funded and built the required small-scale pilot facility (Process Development Unit, PDU) at its Power Plant Laboratories in Windsor, Connecticut. Construction was completed in calendar year 2003. The objective for Phase I was to develop the indirect combustion loop with CO{sub 2

  1. Uniqueness of two-loop master contours

    NASA Astrophysics Data System (ADS)

    Caron-Huot, Simon; Larsen, Kasper J.

    2012-10-01

    Generalized-unitarity calculations of two-loop amplitudes are performed by expanding the amplitude in a basis of master integrals and then determining the coefficients by taking a number of generalized cuts. In this paper, we present a complete classification of the solutions to the maximal cut of integrals with the double-box topology. The ideas presented here are expected to be relevant for all two-loop topologies as well. We find that these maximal-cut solutions are naturally associated with Riemann surfaces whose topology is determined by the number of states at the vertices of the double-box graph. In the case of four massless external momenta we find that, once the geometry of these Riemann surfaces is properly understood, there are uniquely defined master contours producing the coefficients of the double-box integrals in the basis decomposition of the two-loop amplitude. This is in perfect analogy with the situation in one-loop generalized unitarity. In addition, we point out that the chiral integrals recently introduced by Arkani-Hamed et al. can be used as master integrals for the double-box contributions to the two-loop amplitudes in any gauge theory. The infrared finiteness of these integrals allow for their coefficients as well as their integrated expressions to be evaluated in strictly four dimensions, providing significant technical simplification. We evaluate these integrals at four points and obtain remarkably compact results.

  2. Livermore Compiler Analysis Loop Suite

    2013-03-01

    LCALS is designed to evaluate compiler optimizations and performance of a variety of loop kernels and loop traversal software constructs. Some of the loop kernels are pulled directly from "Livermore Loops Coded in C", developed at LLNL (see item 11 below for details of earlier code versions). The older suites were used to evaluate floating-point performances of hardware platforms prior to porting larger application codes. The LCALS suite is geared toward assissing C++ compiler optimizationsmore » and platform performance related to SIMD vectorization, OpenMP threading, and advanced C++ language features. LCALS contains 20 of 24 loop kernels from the older Livermore Loop suites, plus various others representative of loops found in current production appkication codes at LLNL. The latter loops emphasize more diverse loop constructs and data access patterns than the others, such as multi-dimensional difference stencils. The loops are included in a configurable framework, which allows control of compilation, loop sampling for execution timing, which loops are run and their lengths. It generates timing statistics for analysis and comparing variants of individual loops. Also, it is easy to add loops to the suite as desired.« less

  3. Livermore Compiler Analysis Loop Suite

    SciTech Connect

    Hornung, R. D.

    2013-03-01

    LCALS is designed to evaluate compiler optimizations and performance of a variety of loop kernels and loop traversal software constructs. Some of the loop kernels are pulled directly from "Livermore Loops Coded in C", developed at LLNL (see item 11 below for details of earlier code versions). The older suites were used to evaluate floating-point performances of hardware platforms prior to porting larger application codes. The LCALS suite is geared toward assissing C++ compiler optimizations and platform performance related to SIMD vectorization, OpenMP threading, and advanced C++ language features. LCALS contains 20 of 24 loop kernels from the older Livermore Loop suites, plus various others representative of loops found in current production appkication codes at LLNL. The latter loops emphasize more diverse loop constructs and data access patterns than the others, such as multi-dimensional difference stencils. The loops are included in a configurable framework, which allows control of compilation, loop sampling for execution timing, which loops are run and their lengths. It generates timing statistics for analysis and comparing variants of individual loops. Also, it is easy to add loops to the suite as desired.

  4. Closing the Loop Sampler.

    ERIC Educational Resources Information Center

    California Integrated Waste Management Board, Sacramento.

    Closing the Loop (CTL) is a science curriculum designed to introduce students to integrated waste management through awareness. This document presents five lesson plans focusing on developing an understanding of natural resources, solid wastes, conservation, and the life of landfills. Contents include: (1) "What Are Natural Resources?"; (2)…

  5. Loop Quantum Gravity

    NASA Astrophysics Data System (ADS)

    Piguet, O.

    2014-09-01

    In this talk, I give a short general introduction to Loop Quantum Gravity (LQG), beginning with some motivations for quantizing General Relativity, listing various attempts and then focusing on the case of LQG. Work supported in part by the Conselho Nacional de Desenvolvimento Científico e Tecnológico - CNPq (Brazil).

  6. NETL - Chemical Looping Reactor

    ScienceCinema

    None

    2016-07-12

    NETL's Chemical Looping Reactor unit is a high-temperature integrated CLC process with extensive instrumentation to improve computational simulations. A non-reacting test unit is also used to study solids flow at ambient temperature. The CLR unit circulates approximately 1,000 pounds per hour at temperatures around 1,800 degrees Fahrenheit.

  7. NETL - Chemical Looping Reactor

    SciTech Connect

    2013-07-24

    NETL's Chemical Looping Reactor unit is a high-temperature integrated CLC process with extensive instrumentation to improve computational simulations. A non-reacting test unit is also used to study solids flow at ambient temperature. The CLR unit circulates approximately 1,000 pounds per hour at temperatures around 1,800 degrees Fahrenheit.

  8. A Looping Journey.

    ERIC Educational Resources Information Center

    Chapman, Janet

    1999-01-01

    Recounts a teacher's experiences staying with the same group of children for more than one year (looping) as they progress through kindergarten and first grade. Discusses advantages of more stability and less trauma for the child, and more instructional time and less stress for the teacher. Addresses possible disadvantages of children having…

  9. Inner mappings of Bruck loops

    NASA Astrophysics Data System (ADS)

    Kreuzer, Alexander

    1998-01-01

    K-loops have their origin in the theory of sharply 2-transitive groups. In this paper a proof is given that K-loops and Bruck loops are the same. For the proof it is necessary to show that in a (left) Bruck loop the left inner mappings L(b)L(a) L(ab)[minus sign]1 are automorphisms. This paper generalizes results of Glauberman [3], Kist [8] and Kreuzer [9].

  10. Loop Heat Pipes and Capillary Pumped Loops: An Applications Perspective

    NASA Technical Reports Server (NTRS)

    Butler, Dan; Ku, Jentung; Swanson, Theodore; Obenschain, Arthur F. (Technical Monitor)

    2001-01-01

    Capillary pumped loops (CPLS) and loop heat pipes (LHPS) are versatile two-phase heat transfer devices which have recently gained increasing acceptance in space applications. Both systems work based on the same principles and have very similar designs. Nevertheless, some differences exist in the construction of the evaporator and the hydro-accumulator, and these differences lead to very distinct operating characteristics for each loop. This paper presents comparisons of the two loops from an applications perspective, and addresses their impact on spacecraft design, integration, and test. Some technical challenges and issues for both loops are also addressed.

  11. Coronal Loops: Evolving Beyond the Isothermal Approximation

    NASA Astrophysics Data System (ADS)

    Schmelz, J. T.; Cirtain, J. W.; Allen, J. D.

    2002-05-01

    Are coronal loops isothermal? A controversy over this question has arisen recently because different investigators using different techniques have obtained very different answers. Analysis of SOHO-EIT and TRACE data using narrowband filter ratios to obtain temperature maps has produced several key publications that suggest that coronal loops may be isothermal. We have constructed a multi-thermal distribution for several pixels along a relatively isolated coronal loop on the southwest limb of the solar disk using spectral line data from SOHO-CDS taken on 1998 Apr 20. These distributions are clearly inconsistent with isothermal plasma along either the line of sight or the length of the loop, and suggested rather that the temperature increases from the footpoints to the loop top. We speculated originally that these differences could be attributed to pixel size -- CDS pixels are larger, and more `contaminating' material would be expected along the line of sight. To test this idea, we used CDS iron line ratios from our data set to mimic the isothermal results from the narrowband filter instruments. These ratios indicated that the temperature gradient along the loop was flat, despite the fact that a more complete analysis of the same data showed this result to be false! The CDS pixel size was not the cause of the discrepancy; rather, the problem lies with the isothermal approximation used in EIT and TRACE analysis. These results should serve as a strong warning to anyone using this simplistic method to obtain temperature. This warning is echoed on the EIT web page: ``Danger! Enter at your own risk!'' In other words, values for temperature may be found, but they may have nothing to do with physical reality. Solar physics research at the University of Memphis is supported by NASA grant NAG5-9783. This research was funded in part by the NASA/TRACE MODA grant for Montana State University.

  12. Closed-loop anesthesia.

    PubMed

    LE Guen, Morgan; Liu, Ngai; Chazot, Thierry; Fischler, Marc

    2016-05-01

    Automated anesthesia which may offer to the physician time to control hemodynamic and to supervise neurological outcome and which may offer to the patient safety and quality was until recently consider as a holy grail. But this field of research is now increasing in every component of general anesthesia (hypnosis, nociception, neuromuscular blockade) and literature describes some successful algorithms - single or multi closed-loop controller. The aim of these devices is to control a predefined target and to continuously titrate anesthetics whatever the patients' co morbidities and surgical events to reach this target. Literature contains many randomized trials comparing manual and automated anesthesia and shows feasibility and safety of this system. Automation could quickly concern other aspects of anesthesia as fluid management and this review proposes an overview of closed-loop systems in anesthesia.

  13. Determinants of RNA hairpin loop-loop complex stability.

    PubMed

    Gregorian, R S; Crothers, D M

    1995-05-19

    Complexes formed by RNA hairpin loops with complementary loop sequences derived from Escherichia coli RNA I and RNA II, which are involved in the control of DNA replication of plasmid ColE1, have been analyzed to determine the sequence and structural elements required to achieve full affinity. Of particular interest is the origin of the enhanced stability of the complex formed by hairpin loops whose loop sequences have been inverted 5' to 3' with respect to wild-type sequences. Full complementarity of the two interacting loops is required to achieve full or enhanced affinity, while the stems of the two hairpins can differ. The major determinant of enhanced affinity lies in the base-pairs formed at positions 1 and 7 of the loops, together with the two base-pairs of each stem which are closest to the loop. Sequence variation in the middle of the loops, or further down the stem away from the loops, exerts only a modest influence on complex stability. We incorporate these results into a model for the loop-loop interaction which accounts for the importance of positions one and seven and the first two nucleotides of the stem, while providing potentially unique structures for recognition by the RNA one modulator protein. PMID:7539081

  14. Determinants of RNA hairpin loop-loop complex stability.

    PubMed

    Gregorian, R S; Crothers, D M

    1995-05-19

    Complexes formed by RNA hairpin loops with complementary loop sequences derived from Escherichia coli RNA I and RNA II, which are involved in the control of DNA replication of plasmid ColE1, have been analyzed to determine the sequence and structural elements required to achieve full affinity. Of particular interest is the origin of the enhanced stability of the complex formed by hairpin loops whose loop sequences have been inverted 5' to 3' with respect to wild-type sequences. Full complementarity of the two interacting loops is required to achieve full or enhanced affinity, while the stems of the two hairpins can differ. The major determinant of enhanced affinity lies in the base-pairs formed at positions 1 and 7 of the loops, together with the two base-pairs of each stem which are closest to the loop. Sequence variation in the middle of the loops, or further down the stem away from the loops, exerts only a modest influence on complex stability. We incorporate these results into a model for the loop-loop interaction which accounts for the importance of positions one and seven and the first two nucleotides of the stem, while providing potentially unique structures for recognition by the RNA one modulator protein.

  15. Chemical Looping Combustion Kinetics

    SciTech Connect

    Edward Eyring; Gabor Konya

    2009-03-31

    One of the most promising methods of capturing CO{sub 2} emitted by coal-fired power plants for subsequent sequestration is chemical looping combustion (CLC). A powdered metal oxide such as NiO transfers oxygen directly to a fuel in a fuel reactor at high temperatures with no air present. Heat, water, and CO{sub 2} are released, and after H{sub 2}O condensation the CO{sub 2} (undiluted by N{sub 2}) is ready for sequestration, whereas the nickel metal is ready for reoxidation in the air reactor. In principle, these processes can be repeated endlessly with the original nickel metal/nickel oxide participating in a loop that admits fuel and rejects ash, heat, and water. Our project accumulated kinetic rate data at high temperatures and elevated pressures for the metal oxide reduction step and for the metal reoxidation step. These data will be used in computational modeling of CLC on the laboratory scale and presumably later on the plant scale. The oxygen carrier on which the research at Utah is focused is CuO/Cu{sub 2}O rather than nickel oxide because the copper system lends itself to use with solid fuels in an alternative to CLC called 'chemical looping with oxygen uncoupling' (CLOU).

  16. Extension of loop quantum gravity to f(R) theories.

    PubMed

    Zhang, Xiangdong; Ma, Yongge

    2011-04-29

    The four-dimensional metric f(R) theories of gravity are cast into connection-dynamical formalism with real su(2) connections as configuration variables. Through this formalism, the classical metric f(R) theories are quantized by extending the loop quantization scheme of general relativity. Our results imply that the nonperturbative quantization procedure of loop quantum gravity is valid not only for general relativity but also for a rather general class of four-dimensional metric theories of gravity.

  17. ac power control in the Core Flow Test Loop

    SciTech Connect

    McDonald, D.W.

    1980-01-01

    This work represents a status report on a development effort to design an ac power controller for the Core Flow Test Loop. The Core Flow Test Loop will be an engineering test facility which will simulate the thermal environment of a gas-cooled fast-breeder reactor. The problems and limitations of using sinusoidal ac power to simulate the power generated within a nuclear reactor are addressed. The transformer-thyristor configuration chosen for the Core Flow Test Loop power supply is presented. The initial considerations, design, and analysis of a closed-loop controller prototype are detailed. The design is then analyzed for improved performance possibilities and failure modes are investigated at length. A summary of the work completed to date and a proposed outline for continued development completes the report.

  18. The Evolution of Transition Region Loops Using IRIS and AIA

    NASA Technical Reports Server (NTRS)

    Winebarger, Amy R.; DePontieu, Bart

    2014-01-01

    Over the past 50 years, the model for the structure of the solar transition region has evolved from a simple transition layer between the cooler chromosphere to the hotter corona to a complex and diverse region that is dominated by complete loops that never reach coronal temperatures. The IRIS slitjaw images show many complete transition region loops. Several of the "coronal" channels in the SDO AIA instrument include contributions from weak transition region lines. In this work, we combine slitjaw images from IRIS with these channels to determine the evolution of the loops. We develop a simple model for the temperature and density evolution of the loops that can explain the simultaneous observations. Finally, we estimate the percentage of AIA emission that originates in the transition region.

  19. Coarse-Grained Prediction of RNA Loop Structures

    PubMed Central

    Liu, Liang; Chen, Shi-Jie

    2012-01-01

    One of the key issues in the theoretical prediction of RNA folding is the prediction of loop structure from the sequence. RNA loop free energies are dependent on the loop sequence content. However, most current models account only for the loop length-dependence. The previously developed “Vfold” model (a coarse-grained RNA folding model) provides an effective method to generate the complete ensemble of coarse-grained RNA loop and junction conformations. However, due to the lack of sequence-dependent scoring parameters, the method is unable to identify the native and near-native structures from the sequence. In this study, using a previously developed iterative method for extracting the knowledge-based potential parameters from the known structures, we derive a set of dinucleotide-based statistical potentials for RNA loops and junctions. A unique advantage of the approach is its ability to go beyond the the (known) native structures by accounting for the full free energy landscape, including all the nonnative folds. The benchmark tests indicate that for given loop/junction sequences, the statistical potentials enable successful predictions for the coarse-grained 3D structures from the complete conformational ensemble generated by the Vfold model. The predicted coarse-grained structures can provide useful initial folds for further detailed structural refinement. PMID:23144887

  20. Status Update: Uranyl Nitrate Calibration Loop Equipment (UNCLE) at ORNL

    SciTech Connect

    Ladd-Lively, Jennifer L

    2009-01-01

    The successful completion of a field trial of safeguards monitoring equipment at a natural uranium conversion plant (NUCP) demonstrated the need for a facility in which to perform full-scale equipment testing under controlled conditions prior to field deployment of safeguards systems at additional plants. Oak Ridge National Laboratory has developed a Uranyl Nitrate Calibration Loop Equipment (UNCLE) facility to simulate the full-scale operating conditions for a purified uranium-bearing aqueous stream exiting the solvent extraction process conducted in an NUCP. In addition to calibrating instruments such as the neutron detector developed at Los Alamos National Laboratory, UNCLE will be used to test other in-line instruments (mass and volumetric flowmeters, spectrophotometers, etc.). UNCLE will be able to test commercially available equipment, such as the Endress+Hauser Promass 83F Coriolis meter that was used in the field test and other equipment that is presently under development. UNCLE is designed to accommodate different pipe sizes, flow rates, solution concentrations, and other variables of interest. Construction is expected to be completed by the end of September 2008 with initial testing beginning later that year. The design and current status of UNCLE will be presented, along with the capabilities of the facility and the proposed test plans.

  1. Closing the loop.

    PubMed

    Dassau, E; Atlas, E; Phillip, M

    2011-02-01

    Closed-loop algorithms can be found in every aspect of everyday modern life. Automation and control are used constantly to provide safety and to improve quality of life. Closed-loop systems and algorithms can be found in home appliances, automobiles, aviation and more. Can one imagine nowadays driving a car without ABS, cruise control or even anti-sliding control? Similar principles of automation and control can be used in the management of diabetes mellitus (DM). The idea of an algorithmic/technological way to control glycaemia is not new and has been researched for more than four decades. However, recent improvements in both glucose-sensing technology and insulin delivery together with advanced control and systems engineering made this dream of an artificial pancreas possible. The artificial pancreas may be the next big step in the treatment of DM since the use of insulin analogues. An artificial pancreas can be described as internal or external devices that use continuous glucose measurements to automatically manage exogenous insulin delivery with or without other hormones in an attempt to restore glucose regulation in individuals with DM using a control algorithm. This device as described can be internal or external; can use different types of control algorithms with bi-hormonal or uni-hormonal design; and can utilise different ways to administer them. The different designs and implementations have transitioned recently from in silico simulations to clinical evaluation stage with practical applications in mind. This may mark the beginning of a new era in diabetes management with the introduction of semi-closed-loop systems that can prevent or minimise nocturnal hypoglycaemia, to hybrid systems that will manage blood glucose (BG) levels with minimal user intervention to finally fully automated systems that will take the user out of the loop. More and more clinical trials will be needed for the artificial pancreas to become a reality but initial encouraging

  2. Closing the loop with blur

    NASA Astrophysics Data System (ADS)

    Tani, Jacopo

    A great variety of systems use image sensors to provide measurements for closed loop operation. A drawback of using image sensors in real-time feedback is that they provide measurements at slower sampling rates as compared to the actuators, typically around 30 Hz for CCD cameras, hence acting as the bottleneck for closed loop control bandwidths. While high speed cameras exist, higher frame rates imply an upper bound on exposures which lowers the signal-to-noise-ratio (SNR), reducing measurements accuracy. The integrative nature of image sensors though offers the opportunity to prolong the exposure window and collect motion blurred measurements. This research describes how to exploit the dynamic information of observed system outputs, encoded in motion blur, to control fast systems at the fast rate through slow rate image sensors. In order to achieve this objective it is necessary to (a) design a controller providing fast rate input to the system based on the slow image measurements. Ideally such a controller would require a fast rate estimate of the system's state variables in order to provide the necessary control action, therefore an (b) image blur based estimator is to be developed. State estimators typically need a model of the system in order to provide their estimates, so (c) a system identification problem has to be addressed, where a reliable model describing the frequency content of the system, up to frequencies corresponding to the fast rate, has to be determined through slow rate image sensor measurements. Alternatively when such a procedure is not possible for lack, e.g., of knowledge of the input to the system, then (d) a method to reconstruct the output signal frequency content up to frequencies above those set by the limitations of the sampling theorem is to be devised. Therefore in order to "close the loop with blur", this work describes how to pose and solve the problems of, namely: system identification , state estimation, closed loop control and

  3. Constructing QCD one-loop amplitudes

    SciTech Connect

    Forde, Darren; /SLAC /UCLA

    2008-02-22

    In the context of constructing one-loop amplitudes using a unitarity bootstrap approach we discuss a general systematic procedure for obtaining the coefficients of the scalar bubble and triangle integral functions of one-loop amplitudes. Coefficients are extracted after examining the behavior of the cut integrand as the unconstrained parameters of a specifically chosen parameterization of the cut loop momentum approach infinity. Measurements of new physics at the forthcoming experimental program at CERN's Large Hadron Collider (LHC) will require a precise understanding of processes at next-to-leading order (NLO). This places increased demands for the computation of new one-loop amplitudes. This in turn has spurred recent developments towards improved calculational techniques. Direct calculations using Feynman diagrams are in general inefficient. Developments of more efficient techniques have usually centered around unitarity techniques [1], where tree amplitudes are effectively 'glued' together to form loops. The most straightforward application of this method, in which the cut loop momentum is in D = 4, allows for the computation of 'cut-constructible' terms only, i.e. (poly)logarithmic containing terms and any related constants. QCD amplitudes contain, in addition to such terms, rational pieces which cannot be derived using such cuts. These 'missing' rational parts can be extracted using cut loop momenta in D = 4-2 {var_epsilon}. The greater difficulty of such calculations has restricted the application of this approach, although recent developments [3, 4] have provided new promise for this technique. Recently the application of on-shell recursion relations [5] to obtaining the 'missing' rational parts of one-loop processes [6] has provided an alternative very promising solution to this problem. In combination with unitarity methods an 'on-shell bootstrap' approach provides an efficient technique for computing complete one-loop QCD amplitudes [7]. Additionally

  4. Two loop divergences studied with one loop constrained differential renormalization

    SciTech Connect

    Seijas, Cesar . E-mail: cesar@fpaxp1.usc.es

    2007-08-15

    In the context of differential renormalization, using constrained differential renormalization rules at one-loop, we show how to obtain concrete results in two-loop calculations without making use of Ward identities. In order to do that, we obtain a list of integrals with overlapping divergences compatible with CDR that can be applied to various two-loop background field calculations. As an example, we obtain the two-loop coefficient of the beta function of QED, SuperQED and Yang-Mills theory.

  5. Accelerating the loop expansion

    SciTech Connect

    Ingermanson, R.

    1986-07-29

    This thesis introduces a new non-perturbative technique into quantum field theory. To illustrate the method, I analyze the much-studied phi/sup 4/ theory in two dimensions. As a prelude, I first show that the Hartree approximation is easy to obtain from the calculation of the one-loop effective potential by a simple modification of the propagator that does not affect the perturbative renormalization procedure. A further modification then susggests itself, which has the same nice property, and which automatically yields a convex effective potential. I then show that both of these modifications extend naturally to higher orders in the derivative expansion of the effective action and to higher orders in the loop-expansion. The net effect is to re-sum the perturbation series for the effective action as a systematic ''accelerated'' non-perturbative expansion. Each term in the accelerated expansion corresponds to an infinite number of terms in the original series. Each term can be computed explicitly, albeit numerically. Many numerical graphs of the various approximations to the first two terms in the derivative expansion are given. I discuss the reliability of the results and the problem of spontaneous symmetry-breaking, as well as some potential applications to more interesting field theories. 40 refs.

  6. Ekpyrotic loop quantum cosmology

    SciTech Connect

    Wilson-Ewing, Edward

    2013-08-01

    We consider the ekpyrotic paradigm in the context of loop quantum cosmology. In loop quantum cosmology the classical big-bang singularity is resolved due to quantum gravity effects, and so the contracting ekpyrotic branch of the universe and its later expanding phase are connected by a smooth bounce. Thus, it is possible to explicitly determine the evolution of scalar perturbations, from the contracting ekpyrotic phase through the bounce and to the post-bounce expanding epoch. The possibilities of having either one or two scalar fields have been suggested for the ekpyrotic universe, and both cases will be considered here. In the case of a single scalar field, the constant mode of the curvature perturbations after the bounce is found to have a blue spectrum. On the other hand, for the two scalar field ekpyrotic model where scale-invariant entropy perturbations source additional terms in the curvature perturbations, the power spectrum in the post-bounce expanding cosmology is shown to be nearly scale-invariant and so agrees with observations.

  7. High temperature storage loop :

    SciTech Connect

    Gill, David Dennis; Kolb, William J.

    2013-07-01

    A three year plan for thermal energy storage (TES) research was created at Sandia National Laboratories in the spring of 2012. This plan included a strategic goal of providing test capability for Sandia and for the nation in which to evaluate high temperature storage (>650ÀC) technology. The plan was to scope, design, and build a flow loop that would be compatible with a multitude of high temperature heat transfer/storage fluids. The High Temperature Storage Loop (HTSL) would be reconfigurable so that it was useful for not only storage testing, but also for high temperature receiver testing and high efficiency power cycle testing as well. In that way, HTSL was part of a much larger strategy for Sandia to provide a research and testing platform that would be integral for the evaluation of individual technologies funded under the SunShot program. DOEs SunShot program seeks to reduce the price of solar technologies to 6/kWhr to be cost competitive with carbon-based fuels. The HTSL project sought to provide evaluation capability for these SunShot supported technologies. This report includes the scoping, design, and budgetary costing aspects of this effort

  8. Loop quantization of the Schwarzschild black hole.

    PubMed

    Gambini, Rodolfo; Pullin, Jorge

    2013-05-24

    We quantize spherically symmetric vacuum gravity without gauge fixing the diffeomorphism constraint. Through a rescaling, we make the algebra of Hamiltonian constraints Abelian, and therefore the constraint algebra is a true Lie algebra. This allows the completion of the Dirac quantization procedure using loop quantum gravity techniques. We can construct explicitly the exact solutions of the physical Hilbert space annihilated by all constraints. New observables living in the bulk appear at the quantum level (analogous to spin in quantum mechanics) that are not present at the classical level and are associated with the discrete nature of the spin network states of loop quantum gravity. The resulting quantum space-times resolve the singularity present in the classical theory inside black holes. PMID:23745855

  9. Loop quantization of the Schwarzschild black hole.

    PubMed

    Gambini, Rodolfo; Pullin, Jorge

    2013-05-24

    We quantize spherically symmetric vacuum gravity without gauge fixing the diffeomorphism constraint. Through a rescaling, we make the algebra of Hamiltonian constraints Abelian, and therefore the constraint algebra is a true Lie algebra. This allows the completion of the Dirac quantization procedure using loop quantum gravity techniques. We can construct explicitly the exact solutions of the physical Hilbert space annihilated by all constraints. New observables living in the bulk appear at the quantum level (analogous to spin in quantum mechanics) that are not present at the classical level and are associated with the discrete nature of the spin network states of loop quantum gravity. The resulting quantum space-times resolve the singularity present in the classical theory inside black holes.

  10. The double loop mattress suture

    PubMed Central

    Biddlestone, John; Samuel, Madan; Creagh, Terry; Ahmad, Tariq

    2014-01-01

    An interrupted stitch type with favorable tissue characteristics will reduce local wound complications. We describe a novel high-strength, low-tension repair for the interrupted closure of skin, cartilage, and muscle, the double loop mattress stitch, and compare it experimentally with other interrupted closure methods. The performance of the double loop mattress technique in porcine cartilage and skeletal muscle is compared with the simple, mattress, and loop mattress interrupted sutures in both a novel porcine loading chamber and mechanical model. Wound apposition is assessed by electron microscopy. The performance of the double loop mattress in vivo was confirmed using a series of 805 pediatric laparotomies/laparoscopies. The double loop mattress suture is 3.5 times stronger than the loop mattress in muscle and 1.6 times stronger in cartilage (p ≤ 0.001). Additionally, the double loop mattress reduces tissue tension by 66% compared with just 53% for the loop mattress (p ≤ 0.001). Wound gapping is equal, and wound eversion appears significantly improved (p ≤ 0.001) compared with the loop mattress in vitro. In vivo, the double loop mattress performs as well as the loop mattress and significantly better than the mattress stitch in assessments of wound eversion and dehiscence. There were no episodes of stitch extrusion in our series of patients. The mechanical advantage of its intrinsic pulley arrangement gives the double loop mattress its favorable properties. Wound dehiscence is reduced because this stitch type is stronger and exerts less tension on the tissue than the mattress stitch. We advocate the use of this novel stitch wherever a high-strength, low-tension repair is required. These properties will enhance wound repair, and its application will be useful to surgeons of all disciplines. PMID:24698436

  11. Towards conformal loop quantum gravity

    NASA Astrophysics Data System (ADS)

    H-T Wang, Charles

    2006-03-01

    A discussion is given of recent developments in canonical gravity that assimilates the conformal analysis of gravitational degrees of freedom. The work is motivated by the problem of time in quantum gravity and is carried out at the metric and the triad levels. At the metric level, it is shown that by extending the Arnowitt-Deser-Misner (ADM) phase space of general relativity (GR), a conformal form of geometrodynamics can be constructed. In addition to the Hamiltonian and Diffeomorphism constraints, an extra first class constraint is introduced to generate conformal transformations. This phase space consists of York's mean extrinsic curvature time, conformal three-metric and their momenta. At the triad level, the phase space of GR is further enlarged by incorporating spin-gauge as well as conformal symmetries. This leads to a canonical formulation of GR using a new set of real spin connection variables. The resulting gravitational constraints are first class, consisting of the Hamiltonian constraint and the canonical generators for spin-gauge and conformorphism transformations. The formulation has a remarkable feature of being parameter-free. Indeed, it is shown that a conformal parameter of the Barbero-Immirzi type can be absorbed by the conformal symmetry of the extended phase space. This gives rise to an alternative approach to loop quantum gravity that addresses both the conceptual problem of time and the technical problem of functional calculus in quantum gravity.

  12. Loop Heat Pipe Startup Behaviors

    NASA Technical Reports Server (NTRS)

    Ku, Jentung

    2016-01-01

    A loop heat pipe must start successfully before it can commence its service. The startup transient represents one of the most complex phenomena in the loop heat pipe operation. This paper discusses various aspects of loop heat pipe startup behaviors. Topics include the four startup scenarios, the initial fluid distribution between the evaporator and reservoir that determines the startup scenario, factors that affect the fluid distribution between the evaporator and reservoir, difficulties encountered during the low power startup, and methods to enhance the startup success. Also addressed are the pressure spike and pressure surge during the startup transient, and repeated cycles of loop startup and shutdown under certain conditions.

  13. Loop-the-Loop: Bringing Theory into Practice

    ERIC Educational Resources Information Center

    Suwonjandee, N.; Asavapibhop, B.

    2012-01-01

    During the Thai high-school physics teacher training programme, we used an aluminum loop-the-loop system built by the Institute for the Promotion of Teaching Science and Technology (IPST) to demonstrate a circular motion and investigate the concept of the conservation of mechanical energy. There were 27 high-school teachers from three provinces,…

  14. Dynamic PID loop control

    SciTech Connect

    Pei, L.; Klebaner, A.; Theilacker, J.; Soyars, W.; Martinez, A.; Bossert, R.; DeGraff, B.; Darve, C.; /Fermilab

    2011-06-01

    The Horizontal Test Stand (HTS) SRF Cavity and Cryomodule 1 (CM1) of eight 9-cell, 1.3GHz SRF cavities are operating at Fermilab. For the cryogenic control system, how to hold liquid level constant in the cryostat by regulation of its Joule-Thompson JT-valve is very important after cryostat cool down to 2.0 K. The 72-cell cryostat liquid level response generally takes a long time delay after regulating its JT-valve; therefore, typical PID control loop should result in some cryostat parameter oscillations. This paper presents a type of PID parameter self-optimal and Time-Delay control method used to reduce cryogenic system parameters oscillation.

  15. Pulse thermal loop

    NASA Technical Reports Server (NTRS)

    Weislogel, Mark M. (Inventor)

    2002-01-01

    A pulse thermal loop heat transfer system includes a means to use pressure rises in a pair of evaporators to circulate a heat transfer fluid. The system includes one or more valves that iteratively, alternately couple the outlets the evaporators to the condenser. While flow proceeds from one of the evaporators to the condenser, heating creates a pressure rise in the other evaporator, which has its outlet blocked to prevent fluid from exiting the other evaporator. When the flow path is reconfigured to allow flow from the other evaporator to the condenser, the pressure in the other evaporator is used to circulate a pulse of fluid through the system. The reconfiguring of the flow path, by actuating or otherwise changing the configuration of the one or more valves, may be triggered when a predetermined pressure difference between the evaporators is reached.

  16. Vortex loops and Majoranas

    SciTech Connect

    Chesi, Stefano; Jaffe, Arthur; Loss, Daniel; Pedrocchi, Fabio L.

    2013-11-15

    We investigate the role that vortex loops play in characterizing eigenstates of interacting Majoranas. We give some general results and then focus on ladder Hamiltonian examples as a test of further ideas. Two methods yield exact results: (i) A mapping of certain spin Hamiltonians to quartic interactions of Majoranas shows that the spectra of these two examples coincide. (ii) In cases with reflection-symmetric Hamiltonians, we use reflection positivity for Majoranas to characterize vortices in the ground states. Two additional methods suggest wider applicability of these results: (iii) Numerical evidence suggests similar behavior for certain systems without reflection symmetry. (iv) A perturbative analysis also suggests similar behavior without the assumption of reflection symmetry.

  17. The Loop Algorithm

    NASA Astrophysics Data System (ADS)

    Evertz, Hans Gerd

    1998-03-01

    Exciting new investigations have recently become possible for strongly correlated systems of spins, bosons, and fermions, through Quantum Monte Carlo simulations with the Loop Algorithm (H.G. Evertz, G. Lana, and M. Marcu, Phys. Rev. Lett. 70, 875 (1993).) (For a recent review see: H.G. Evertz, cond- mat/9707221.) and its generalizations. A review of this new method, its generalizations and its applications is given, including some new results. The Loop Algorithm is based on a formulation of physical models in an extended ensemble of worldlines and graphs, and is related to Swendsen-Wang cluster algorithms. It performs nonlocal changes of worldline configurations, determined by local stochastic decisions. It overcomes many of the difficulties of traditional worldline simulations. Computer time requirements are reduced by orders of magnitude, through a corresponding reduction in autocorrelations. The grand-canonical ensemble (e.g. varying winding numbers) is naturally simulated. The continuous time limit can be taken directly. Improved Estimators exist which further reduce the errors of measured quantities. The algorithm applies unchanged in any dimension and for varying bond-strengths. It becomes less efficient in the presence of strong site disorder or strong magnetic fields. It applies directly to locally XYZ-like spin, fermion, and hard-core boson models. It has been extended to the Hubbard and the tJ model and generalized to higher spin representations. There have already been several large scale applications, especially for Heisenberg-like models, including a high statistics continuous time calculation of quantum critical exponents on a regularly depleted two-dimensional lattice of up to 20000 spatial sites at temperatures down to T=0.01 J.

  18. Uranyl Nitrate Flow Loop

    SciTech Connect

    Ladd-Lively, Jennifer L

    2008-10-01

    The objectives of the work discussed in this report were to: (1) develop a flow loop that would simulate the purified uranium-bearing aqueous stream exiting the solvent extraction process in a natural uranium conversion plant (NUCP); (2) develop a test plan that would simulate normal operation and disturbances that could be anticipated in an NUCP; (3) use the flow loop to test commercially available flowmeters for use as safeguards monitors; and (4) recommend a flowmeter for production-scale testing at an NUCP. There has been interest in safeguarding conversion plants because the intermediate products [uranium dioxide (UO{sub 2}), uranium tetrafluoride (UF{sub 4}), and uranium hexafluoride (UF{sub 6})] are all suitable uranium feedstocks for producing special nuclear materials. Furthermore, if safeguards are not applied virtually any nuclear weapons program can obtain these feedstocks without detection by the International Atomic Energy Agency (IAEA). Historically, IAEA had not implemented safeguards until the purified UF{sub 6} product was declared as feedstock for enrichment plants. H. A. Elayat et al. provide a basic definition of a safeguards system: 'The function of a safeguards system on a chemical conversion plant is in general terms to verify that no useful nuclear material is being diverted to use in a nuclear weapons program'. The IAEA now considers all highly purified uranium compounds as candidates for safeguarding. DOE is currently interested in 'developing instruments, tools, strategies, and methods that could be of use to the IAEA in the application of safeguards' for materials found in the front end of the nuclear fuel cycle-prior to the production of the uranium hexafluoride or oxides that have been the traditional starting point for IAEA safeguards. Several national laboratories, including Oak Ridge, Los Alamos, Lawrence Livermore, and Brookhaven, have been involved in developing tools or techniques for safeguarding conversion plants. This study

  19. RCD+: Fast loop modeling server.

    PubMed

    López-Blanco, José Ramón; Canosa-Valls, Alejandro Jesús; Li, Yaohang; Chacón, Pablo

    2016-07-01

    Modeling loops is a critical and challenging step in protein modeling and prediction. We have developed a quick online service (http://rcd.chaconlab.org) for ab initio loop modeling combining a coarse-grained conformational search with a full-atom refinement. Our original Random Coordinate Descent (RCD) loop closure algorithm has been greatly improved to enrich the sampling distribution towards near-native conformations. These improvements include a new workflow optimization, MPI-parallelization and fast backbone angle sampling based on neighbor-dependent Ramachandran probability distributions. The server starts by efficiently searching the vast conformational space from only the loop sequence information and the environment atomic coordinates. The generated closed loop models are subsequently ranked using a fast distance-orientation dependent energy filter. Top ranked loops are refined with the Rosetta energy function to obtain accurate all-atom predictions that can be interactively inspected in an user-friendly web interface. Using standard benchmarks, the average root mean squared deviation (RMSD) is 0.8 and 1.4 Å for 8 and 12 residues loops, respectively, in the challenging modeling scenario in where the side chains of the loop environment are fully remodeled. These results are not only very competitive compared to those obtained with public state of the art methods, but also they are obtained ∼10-fold faster. PMID:27151199

  20. RCD+: Fast loop modeling server

    PubMed Central

    López-Blanco, José Ramón; Canosa-Valls, Alejandro Jesús; Li, Yaohang; Chacón, Pablo

    2016-01-01

    Modeling loops is a critical and challenging step in protein modeling and prediction. We have developed a quick online service (http://rcd.chaconlab.org) for ab initio loop modeling combining a coarse-grained conformational search with a full-atom refinement. Our original Random Coordinate Descent (RCD) loop closure algorithm has been greatly improved to enrich the sampling distribution towards near-native conformations. These improvements include a new workflow optimization, MPI-parallelization and fast backbone angle sampling based on neighbor-dependent Ramachandran probability distributions. The server starts by efficiently searching the vast conformational space from only the loop sequence information and the environment atomic coordinates. The generated closed loop models are subsequently ranked using a fast distance-orientation dependent energy filter. Top ranked loops are refined with the Rosetta energy function to obtain accurate all-atom predictions that can be interactively inspected in an user-friendly web interface. Using standard benchmarks, the average root mean squared deviation (RMSD) is 0.8 and 1.4 Å for 8 and 12 residues loops, respectively, in the challenging modeling scenario in where the side chains of the loop environment are fully remodeled. These results are not only very competitive compared to those obtained with public state of the art methods, but also they are obtained ∼10-fold faster. PMID:27151199

  1. Higher dimensional loop quantum cosmology

    NASA Astrophysics Data System (ADS)

    Zhang, Xiangdong

    2016-07-01

    Loop quantum cosmology (LQC) is the symmetric sector of loop quantum gravity. In this paper, we generalize the structure of loop quantum cosmology to the theories with arbitrary spacetime dimensions. The isotropic and homogeneous cosmological model in n+1 dimensions is quantized by the loop quantization method. Interestingly, we find that the underlying quantum theories are divided into two qualitatively different sectors according to spacetime dimensions. The effective Hamiltonian and modified dynamical equations of n+1 dimensional LQC are obtained. Moreover, our results indicate that the classical big bang singularity is resolved in arbitrary spacetime dimensions by a quantum bounce. We also briefly discuss the similarities and differences between the n+1 dimensional model and the 3+1 dimensional one. Our model serves as a first example of higher dimensional loop quantum cosmology and offers the possibility to investigate quantum gravity effects in higher dimensional cosmology.

  2. Loop Heat Pipe Startup Behaviors

    NASA Technical Reports Server (NTRS)

    Ku, Jentung

    2014-01-01

    A loop heat pipe must start successfully before it can commence its service. The start-up transient represents one of the most complex phenomena in the loop heat pipe operation. This paper discusses various aspects of loop heat pipe start-up behaviors. Topics include the four start-up scenarios, the initial fluid distribution between the evaporator and reservoir that determines the start-up scenario, factors that affect the fluid distribution between the evaporator and reservoir, difficulties encountered during the low power start-up, and methods to enhance the start-up success. Also addressed are the thermodynamic constraint between the evaporator and reservoir in the loop heat pipe operation, the superheat requirement for nucleate boiling, pressure spike and pressure surge during the start-up transient, and repeated cycles of loop start-up andshutdown under certain conditions.

  3. Lorentz covariance of loop quantum gravity

    NASA Astrophysics Data System (ADS)

    Rovelli, Carlo; Speziale, Simone

    2011-05-01

    The kinematics of loop gravity can be given a manifestly Lorentz-covariant formulation: the conventional SU(2)-spin-network Hilbert space can be mapped to a space K of SL(2,C) functions, where Lorentz covariance is manifest. K can be described in terms of a certain subset of the projected spin networks studied by Livine, Alexandrov and Dupuis. It is formed by SL(2,C) functions completely determined by their restriction on SU(2). These are square-integrable in the SU(2) scalar product, but not in the SL(2,C) one. Thus, SU(2)-spin-network states can be represented by Lorentz-covariant SL(2,C) functions, as two-component photons can be described in the Lorentz-covariant Gupta-Bleuler formalism. As shown by Wolfgang Wieland in a related paper, this manifestly Lorentz-covariant formulation can also be directly obtained from canonical quantization. We show that the spinfoam dynamics of loop quantum gravity is locally SL(2,C)-invariant in the bulk, and yields states that are precisely in K on the boundary. This clarifies how the SL(2,C) spinfoam formalism yields an SU(2) theory on the boundary. These structures define a tidy Lorentz-covariant formalism for loop gravity.

  4. Complete normal ordering 1: Foundations

    NASA Astrophysics Data System (ADS)

    Ellis, John; Mavromatos, Nick E.; Skliros, Dimitri P.

    2016-08-01

    We introduce a new prescription for quantising scalar field theories (in generic spacetime dimension and background) perturbatively around a true minimum of the full quantum effective action, which is to 'complete normal order' the bare action of interest. When the true vacuum of the theory is located at zero field value, the key property of this prescription is the automatic cancellation, to any finite order in perturbation theory, of all tadpole and, more generally, all 'cephalopod' Feynman diagrams. The latter are connected diagrams that can be disconnected into two pieces by cutting one internal vertex, with either one or both pieces free from external lines. In addition, this procedure of 'complete normal ordering' (which is an extension of the standard field theory definition of normal ordering) reduces by a substantial factor the number of Feynman diagrams to be calculated at any given loop order. We illustrate explicitly the complete normal ordering procedure and the cancellation of cephalopod diagrams in scalar field theories with non-derivative interactions, and by using a point splitting 'trick' we extend this result to theories with derivative interactions, such as those appearing as non-linear σ-models in the world-sheet formulation of string theory. We focus here on theories with trivial vacua, generalising the discussion to non-trivial vacua in a follow-up paper.

  5. Modeling loop entropy.

    PubMed

    Chirikjian, Gregory S

    2011-01-01

    Proteins fold from a highly disordered state into a highly ordered one. Traditionally, the folding problem has been stated as one of predicting "the" tertiary structure from sequential information. However, new evidence suggests that the ensemble of unfolded forms may not be as disordered as once believed, and that the native form of many proteins may not be described by a single conformation, but rather an ensemble of its own. Quantifying the relative disorder in the folded and unfolded ensembles as an entropy difference may therefore shed light on the folding process. One issue that clouds discussions of "entropy" is that many different kinds of entropy can be defined: entropy associated with overall translational and rotational Brownian motion, configurational entropy, vibrational entropy, conformational entropy computed in internal or Cartesian coordinates (which can even be different from each other), conformational entropy computed on a lattice, each of the above with different solvation and solvent models, thermodynamic entropy measured experimentally, etc. The focus of this work is the conformational entropy of coil/loop regions in proteins. New mathematical modeling tools for the approximation of changes in conformational entropy during transition from unfolded to folded ensembles are introduced. In particular, models for computing lower and upper bounds on entropy for polymer models of polypeptide coils both with and without end constraints are presented. The methods reviewed here include kinematics (the mathematics of rigid-body motions), classical statistical mechanics, and information theory.

  6. Self-sustained hydrodynamic oscillations in a natural-circulation two-phase-flow boiling loop

    NASA Technical Reports Server (NTRS)

    Jain, K. C.

    1969-01-01

    Results of an experimental and theoretical study of factors affecting self-sustaining hydrodynamic oscillations in boiling-water loops are reported. Data on flow variables, and the effects of geometry, subcooling and pressure on the development of oscillatory behavior in a natural-circulation two-phase-flow boiling loop are included.

  7. Rogowski Loop design for NSTX

    SciTech Connect

    McCormack, B.; Kaita, R.; Kugel, H.; Hatcher, R.

    2000-01-06

    The Rogowski Loop is one of the most basic diagnostics for tokamak operations. On the National Spherical Torus Experiment (NSTX), the plasma current Rogowski Loop had the constraints of the very limited space available on the center stack, 5,000 volt isolation, flexibility requirements as it remained a part of the Center Stack assembly after the first phase of operation, and a +120 C temperature requirement. For the second phase of operation, four Halo Current Rogowski Loops under the Center Stack tiles will be installed having +600 C and limited space requirements. Also as part of the second operational phase, up to ten Rogowski Loops will installed to measure eddy currents in the Passive Plate support structures with +350 C, restricted space, and flexibility requirements. This presentation will provide the details of the material selection, fabrication techniques, testing, and installation results of the Rogowski Loops that were fabricated for the high temperature operational and bakeout requirements, high voltage isolation requirements, and the space and flexibility requirements imposed upon the Rogowski Loops. In the future operational phases of NSTX, additional Rogowski Loops could be anticipated that will measure toroidal plasma currents in the vacuum vessel and in the Passive Plate assemblies.

  8. Explaining Inverted Temperature Loops in the Quiet Solar Corona with Magnetohydrodynamic Wave Mode Conversion

    NASA Astrophysics Data System (ADS)

    Schiff, Avery; Cranmer, Steven R.

    2016-05-01

    We simulate the temperature profiles along coronal loops measured with AIA DEM tomography and field-line extrapolation by Nuevo et al (2013). By varying the strength and nature of the heating mechanism, we modeled steady-state, gravitationally stable loops that have temperature profiles with local maxima below the loop apex. Because these loops have negative vertical temperature gradients over much of their length, they have been called "down loops" and were seen to exist primarily in equatorial quiet regions near solar minimum. In our models, the amount of heat deposited in the loop is attributed to two sources: (1) the dissipation of Alfven waves in a turbulent cascade, and (2) the dissipation of compressive waves over a variable length. The compressive waves are generated in a nonlinear process by which some fraction of the Alfven waves undergo mode conversion instead of contributing directly to the heating process. We found that when a large percentage (> 99%) of the Alfven waves underwent this conversion, the heating was greatly concentrated at the base of the loop and stable "down loops" were created. In some cases, we found loops with three extrema that are gravitationally stable. We map the full parameter space to explore which conditions lead to which loop types, and we demonstrate that the simulated characteristics of the loops -- including magnetic field strength, pressure, and temperature -- are consistent with values measured by Nuevo et al. (2013).

  9. Complete data listings for CSEM soundings on Kilauea Volcano, Hawaii

    SciTech Connect

    Kauahikaua, J.; Jackson, D.B.; Zablocki, C.J.

    1983-01-01

    This document contains complete data from a controlled-source electromagnetic (CSEM) sounding/mapping project at Kilauea volcano, Hawaii. The data were obtained at 46 locations about a fixed-location, horizontal, polygonal loop source in the summit area of the volcano. The data consist of magnetic field amplitudes and phases at excitation frequencies between 0.04 and 8 Hz. The vector components were measured in a cylindrical coordinate system centered on the loop source. 5 references.

  10. Ultraviolet behavior of N = 8 supergravity at four loops.

    PubMed

    Bern, Z; Carrasco, J J M; Dixon, L J; Johansson, H; Roiban, R

    2009-08-21

    We describe the construction of the complete four-loop four-particle amplitude of N=8 supergravity. The amplitude is ultraviolet finite, not only in four dimensions, but in five dimensions as well. The observed extra cancellations provide additional nontrivial evidence that N=8 supergravity in four dimensions may be ultraviolet finite to all orders of perturbation theory.

  11. Ultraviolet Behavior of N=8 Supergravity at Four Loops

    SciTech Connect

    Bern, Z.; Carrasco, J. J. M.; Johansson, H.; Dixon, L. J.; Roiban, R.

    2009-08-21

    We describe the construction of the complete four-loop four-particle amplitude of N=8 supergravity. The amplitude is ultraviolet finite, not only in four dimensions, but in five dimensions as well. The observed extra cancellations provide additional nontrivial evidence that N=8 supergravity in four dimensions may be ultraviolet finite to all orders of perturbation theory.

  12. Muon loop light-by-light contribution to hyperfine splitting in muonium.

    PubMed

    Eides, Michael I; Shelyuto, Valery A

    2014-05-01

    Three-loop corrections to hyperfine splitting in muonium, generated by the gauge-invariant sets of diagrams with muon and tauon loop light-by-light scattering blocks, are calculated. These results complete calculations of all light-by-light scattering contributions to hyperfine splitting in muonium.

  13. 2F and 2H evaporator loop evaluation closure report

    SciTech Connect

    Bates, W.F.

    1994-01-28

    As a result of the Concentrate Transfer System (CTS) tank ventilation system contamination event, a task team was formed to evaluate instrument loops associated with waste reduction equipment. During the event a conductivity probe designed to provide an alarm and initiate an interlock failed to respond to the presence of liquid. An investigation revealed that the probe had become disconnected from the loop. The daily functional check of the conductivity probe circuit only tested the circuit continuity from the ventilation unit to the control room and did not actually test the probe. To test the continuity, a test switch was used to simulate the conducting probe. Because the functional check did not test each part of the loop, the test could be satisfactorily completed even though the probe itself was inoperable. The function of the task team was to develop a list of loops and interlocks prioritized by importance and likelihood of similar failure. The team evaluated the associated loop calibration and functional test procedures to verify that they are adequate to ensure loop performance on a periodic frequency. This report documents the evaluation findings and associated actions required prior to startup of the 2F and 2H evaporators.

  14. SDO Sees Flourishing Magnetic Loops

    NASA Video Gallery

    A bright set of loops near the edge of the sun’s face grew and shifted quickly after the magnetic field was disrupted by a small eruption on Nov. 25, 2015. Charged particles emitting light in extre...

  15. Automatic blocking of nested loops

    NASA Technical Reports Server (NTRS)

    Schreiber, Robert; Dongarra, Jack J.

    1990-01-01

    Blocked algorithms have much better properties of data locality and therefore can be much more efficient than ordinary algorithms when a memory hierarchy is involved. On the other hand, they are very difficult to write and to tune for particular machines. The reorganization is considered of nested loops through the use of known program transformations in order to create blocked algorithms automatically. The program transformations used are strip mining, loop interchange, and a variant of loop skewing in which invertible linear transformations (with integer coordinates) of the loop indices are allowed. Some problems are solved concerning the optimal application of these transformations. It is shown, in a very general setting, how to choose a nearly optimal set of transformed indices. It is then shown, in one particular but rather frequently occurring situation, how to choose an optimal set of block sizes.

  16. SDO Sees Brightening Magnetic Loops

    NASA Video Gallery

    Two active regions sprouted arches of bundled magnetic loops in this video from NASA’s Solar Dynamics Observatory taken on Nov. 11-12, 2015. Charged particles spin along the magnetic field, tracing...

  17. Loop Electrosurgical Excision Procedure (LEEP)

    MedlinePlus

    ... that acts like a scalpel (surgical knife). An electric current is passed through the loop, which cuts away ... A procedure in which an instrument works with electric current to destroy tissue. Local Anesthesia: The use of ...

  18. Number of cosmic string loops

    NASA Astrophysics Data System (ADS)

    Blanco-Pillado, Jose J.; Olum, Ken D.; Shlaer, Benjamin

    2014-01-01

    Using recent simulation results, we provide the mass and speed spectrum of cosmic string loops. This is the quantity of primary interest for many phenomenological signatures of cosmic strings, and it can be accurately predicted using recently acquired detailed knowledge of the loop production function. We emphasize that gravitational smoothing of long strings plays a negligible role in determining the total number of existing loops. We derive a bound on the string tension imposed by recent constraints on the stochastic gravitational wave background from pulsar timing arrays, finding Gμ ≤2.8×10-9. We also provide a derivation of the Boltzmann equation for cosmic string loops in the language of differential forms.

  19. Three-Loop Radiative-Recoil Corrections to Hyperfine Splitting in Muonium: Diagrams with Polarization Loops

    SciTech Connect

    Eides, Michael I.; Shelyuto, Valery A.

    2009-09-25

    We consider three-loop radiative-recoil corrections to hyperfine splitting in muonium generated by the diagrams with electron and muon vacuum polarizations. We calculate single-logarithmic and nonlogarithmic contributions of order alpha{sup 3}(m/M)E{sub F} generated by gauge invariant sets of diagrams with electron and muon polarization insertions in the electron and muon factors. Combining these corrections with the older results, we obtain total contribution to hyperfine splitting generated by all diagrams with electron and muon polarization loops. The calculation of this contribution completes an important stage in the implementation of the program of reduction of the theoretical uncertainty of hyperfine splitting below 10 Hz. The new results improve the theory of hyperfine splitting and affect the value of the electron-muon mass ratio extracted from experimental data on muonium hyperfine splitting.

  20. Iterative structure within the five-particle two-loop amplitude

    SciTech Connect

    Cachazo, Freddy; Spradlin, Marcus; Volovich, Anastasia

    2006-08-15

    We find an unexpected iterative structure within the two-loop five-gluon amplitude in N=4 supersymmetric Yang-Mills theory. Specifically, we show that a subset of diagrams contributing to the full amplitude, including a two-loop pentagon-box integral with nontrivial dependence on five kinematical variables, satisfies an iterative relation in terms of one-loop scalar box diagrams. The implications of this result for the possible iterative structure of the full two-loop amplitude are discussed.

  1. Observations of loops and prominences

    NASA Technical Reports Server (NTRS)

    Strong, Keith T.

    1994-01-01

    We review recent observations by the Yohkoh-SXT (Soft X-ray Telescope) in collaboration with other spacecraft and ground-based observatories of coronal loops and prominences. These new results point to problems that SoHO will be able to address. With a unique combination of rapid-cadence digital imaging (greater than or equal to 32 s full-disk and greater than or equal to 2 s partial-frame images), high spatial resolution (greater than or equal to 2.5 arcsec pixels), high sensitivity (EM less than or equal to 10(exp 42) cm(exp -3)), a low-scatter mirror, and large dynamic range, SXT can observe a vast range of targets on the Sun. Over the first 21 months of Yohkoh operations SXT has taken over one million images of the corona and so is building up an invaluable long-term database on the large-scale corona and loop geometry. The most striking thing about the SXT images is the range of loop sizes and shapes. The active regions are a bright tangle of magnetic field lines, surrounded by a network of large-scale quiet-Sun loops stretching over distances in excess of 105 km. The cross-section of most loops seems to be constant. Loops displaying significant Gamma's are the exception, not the rule, implying the presence of widespread currents in the corona. All magnetic structures show changes. Time scales range from seconds to months. The question of how these structures are formed, become filled with hot plasma, and are maintained is still open. While we see the propagation of brightenings along the length of active-region loops and in X-ray jets with velocities of several hundred km/s, much higher velocities are seen in the quiet Sun. In XBP flares, for example, velocities of over 1000 km/s are common. Active-region loops seem to be in constant motion, moving slowly outward, carrying plasma with them. During flares, loops often produce localized brightenings at the base and later at the apex of the loop. Quiescent filaments and prominences have been observed regularly

  2. BOOK REVIEW: A First Course in Loop Quantum Gravity A First Course in Loop Quantum Gravity

    NASA Astrophysics Data System (ADS)

    Dittrich, Bianca

    2012-12-01

    Students who are interested in quantum gravity usually face the difficulty of working through a large amount of prerequisite material before being able to deal with actual quantum gravity. A First Course in Loop Quantum Gravity by Rodolfo Gambini and Jorge Pullin, aimed at undergraduate students, marvellously succeeds in starting from the basics of special relativity and covering basic topics in Hamiltonian dynamics, Yang Mills theory, general relativity and quantum field theory, ending with a tour on current (loop) quantum gravity research. This is all done in a short 173 pages! As such the authors cannot cover any of the subjects in depth and indeed this book should be seen more as a motivation and orientation guide so that students can go on to follow the hints for further reading. Also, as there are many subjects to cover beforehand, slightly more than half of the book is concerned with more general subjects (special and general relativity, Hamiltonian dynamics, constrained systems, quantization) before the starting point for loop quantum gravity, the Ashtekar variables, are introduced. The approach taken by the authors is heuristic and uses simplifying examples in many places. However they take care in motivating all the main steps and succeed in presenting the material pedagogically. Problem sets are provided throughout and references for further reading are given. Despite the shortness of space, alternative viewpoints are mentioned and the reader is also referred to experimental results and bounds. In the second half of the book the reader gets a ride through loop quantum gravity; the material covers geometric operators and their spectra, the Hamiltonian constraints, loop quantum cosmology and, more broadly, black hole thermodynamics. A glimpse of recent developments and open problems is given, for instance a discussion on experimental predictions, where the authors carefully point out the very preliminary nature of the results. The authors close with an

  3. THE CORONAL LOOP INVENTORY PROJECT

    SciTech Connect

    Schmelz, J. T.; Pathak, S.; Christian, G. M.; Dhaliwal, R. S. S.; Paul, K. S.

    2015-11-01

    Most coronal physicists now seem to agree that loops are composed of tangled magnetic strands and have both isothermal and multithermal cross-field temperature distributions. As yet, however, there is no information on the relative importance of each of these categories, and we do not know how common one is with respect to the other. In this paper, we investigate these temperature properties for all loop segments visible in the 171-Å image of AR 11294, which was observed by the Atmospheric Imaging Assembly (AIA) on 2011 September 15. Our analysis revealed 19 loop segments, but only 2 of these were clearly isothermal. Six additional segments were effectively isothermal, that is, the plasma emission to which AIA is sensitive could not be distinguished from isothermal emission, within measurement uncertainties. One loop had both isothermal transition region and multithermal coronal solutions. Another five loop segments require multithermal plasma to reproduce the AIA observations. The five remaining loop segments could not be separated reliably from the background in the crucial non-171-Å AIA images required for temperature analysis. We hope that the direction of coronal heating models and the efforts modelers spend on various heating scenarios will be influenced by these results.

  4. The Coronal Loop Inventory Project

    NASA Astrophysics Data System (ADS)

    Schmelz, J. T.; Pathak, S.; Christian, G. M.; Dhaliwal, R. S. S.; Paul, K. S.

    2015-11-01

    Most coronal physicists now seem to agree that loops are composed of tangled magnetic strands and have both isothermal and multithermal cross-field temperature distributions. As yet, however, there is no information on the relative importance of each of these categories, and we do not know how common one is with respect to the other. In this paper, we investigate these temperature properties for all loop segments visible in the 171-Å image of AR 11294, which was observed by the Atmospheric Imaging Assembly (AIA) on 2011 September 15. Our analysis revealed 19 loop segments, but only 2 of these were clearly isothermal. Six additional segments were effectively isothermal, that is, the plasma emission to which AIA is sensitive could not be distinguished from isothermal emission, within measurement uncertainties. One loop had both isothermal transition region and multithermal coronal solutions. Another five loop segments require multithermal plasma to reproduce the AIA observations. The five remaining loop segments could not be separated reliably from the background in the crucial non-171-Å AIA images required for temperature analysis. We hope that the direction of coronal heating models and the efforts modelers spend on various heating scenarios will be influenced by these results.

  5. [Significance of deficient bacterial colonization in the pathogenesis of mucosal lesions in experimental blind loop syndrome].

    PubMed

    Menge, H; Germer, C T; Stössel, R; Simes, G; Wagner, J; Hahn, H; Riecken, E O

    1985-07-20

    A complete evaluation of the bacterial flora in jejunal self-filling blind loops was performed. The results show a significant increase in bacteria of the genera E. coli, Streptococcus and Bacteroides. In further experiments, jejunal self-filling blind loops were created in germ-free animals. In spite of the germ-free state the mucosa displayed marked hyperplasia. The same was true when the blind loops had been contaminated with aerobic bacteria. These results demonstrate that other factors in addition to bacterial overgrowth contribute to the mucosal damage observed in self-filling blind loops.

  6. The behavior of a Costas loop in the presence of space telemetry signals

    NASA Technical Reports Server (NTRS)

    Nguyen, Tien M.

    1992-01-01

    When the Costas loop is operated in the presence of a residual carrier space telemetry signal, the loop reconstructs its carrier reference from an input signal whose carrier component is not completely suppressed. The telemetry signal investigated in this work is generated by phase shift-keying the data onto a subcarrier and then phase modulating onto the sinusoidal carrier. The telemetry modulation index, telemetry bit rate, subcarrier waveform, and subcarrier frequency are shown to be the key system parameters that contribute to the performance degradation of a Costas loop. Furthermore, the effect of Doppler shift on the loop is also investigated in this work.

  7. LOOPREF: A Fluid Code for the Simulation of Coronal Loops

    NASA Technical Reports Server (NTRS)

    deFainchtein, Rosalinda; Antiochos, Spiro; Spicer, Daniel

    1998-01-01

    This report documents the code LOOPREF. LOOPREF is a semi-one dimensional finite element code that is especially well suited to simulate coronal-loop phenomena. It has a full implementation of adaptive mesh refinement (AMR), which is crucial for this type of simulation. The AMR routines are an improved version of AMR1D. LOOPREF's versatility makes is suitable to simulate a wide variety of problems. In addition to efficiently providing very high resolution in rapidly changing regions of the domain, it is equipped to treat loops of variable cross section, any non-linear form of heat conduction, shocks, gravitational effects, and radiative loss.

  8. Variability and degradation of homeostasis in self-sustained oscillators.

    PubMed

    Wright, Thomas; Twaddle, James; Humphries, Charlotte; Hayes, Samuel; Kim, Eun-jin

    2016-03-01

    Homeostasis is known to be absolutely critical to the sustainability of living organisms. At the heart of homeostasis are various feedback loops, which can control and regulate a system to stay in a most favourable stable state upon the influence of various disturbance. While variability has emerged as a key factor in sustainability, too much variability could however be detrimental. It is thus absolutely crucial to understand the effect of fluctuation in different feedback loops. While modelling technique has achieved a great advancement to understand this issue, too a complicated model however often prevents us from disentangling different many processes. Here, we propose a novel model to gain a key insight into the effect of variability in feedback on self-sustained oscillation. Specifically, by taking into account variation in model parameters for self-excitation and nonlinear damping, corresponding to positive and negative feedback, respectively, we show how fluctuation in positive or negative feedback weakens the efficiency of feedback and affects self-sustained oscillations, possibly leading to a complete breakdown of self-regulation. While results are generic and could be applied to different self-regulating systems (e.g. self-regulation of neuron activity, normal cell growth, etc.), we present a specific application to heart dynamics. In particular, we show that fluctuation in positive feedback can lead to slow heart by either amplitude death or oscillation death pathway while fluctuation in negative feedback can lead to fast heart beat.

  9. Assessing catchment connectivity using hysteretic loops

    NASA Astrophysics Data System (ADS)

    Keesstra, Saskia; Masselink, Rens; Goni, Mikel; Campo, Miguel Angel; Gimenez, Rafael; Casali, Javier; Seeger, Manuel

    2015-04-01

    ). On the other hand, Op (ca.1,700 ha) is covered with forest and pasture (cattle-breeding); while Ow (ca. 500 ha), a sub-watershed of the Op, is almost completely covered with forest. The predominant climate in Op/Ow is sub-Atlantic. Furthermore, antecedent conditions and event characteristics were analysed. The loops were compared quantitatively and qualitatively between catchments for similar events and within the catchments for events with different characteristics.

  10. Quantifying a Systems Map: Network Analysis of a Childhood Obesity Causal Loop Diagram

    PubMed Central

    Johnstone, Michael; Creighton, Doug; de la Haye, Kayla; Allender, Steven

    2016-01-01

    Causal loop diagrams developed by groups capture a shared understanding of complex problems and provide a visual tool to guide interventions. This paper explores the application of network analytic methods as a new way to gain quantitative insight into the structure of an obesity causal loop diagram to inform intervention design. Identification of the structural features of causal loop diagrams is likely to provide new insights into the emergent properties of complex systems and analysing central drivers has the potential to identify leverage points. The results found the structure of the obesity causal loop diagram to resemble commonly observed empirical networks known for efficient spread of information. Known drivers of obesity were found to be the most central variables along with others unique to obesity prevention in the community. While causal loop diagrams are often specific to single communities, the analytic methods provide means to contrast and compare multiple causal loop diagrams for complex problems. PMID:27788224

  11. DNA twisting flexibility and the formation of sharply looped protein-DNA complexes

    NASA Astrophysics Data System (ADS)

    Cloutier, T. E.; Widom, J.

    2005-03-01

    Gene-regulatory complexes often require that pairs of DNA-bound proteins interact by looping-out short (often 100-bp) stretches of DNA. The loops can vary in detailed length and sequence and, thus, in total helical twist, which radically alters their geometry. How this variability is accommodated structurally is not known. Here we show that the inherent twistability of 89- to 105-bp DNA circles exceeds theoretical expectation by up to 400-fold. These results can be explained only by greatly enhanced DNA flexibility, not by permanent bends. They invalidate the use of classic theories of flexibility for understanding sharp DNA looping but support predictions of two recent theories. Our findings imply an active role for DNA flexibility in loop formation and suggest that variability in the detailed helical twist of regulatory loops is accommodated naturally by the inherent twistability of the DNA. activation | gene regulation | repression

  12. Saturating representation of loop conformational fragments in structure databanks

    PubMed Central

    Fernandez-Fuentes, Narcis; Fiser, András

    2006-01-01

    Background Short fragments of proteins are fundamental starting points in various structure prediction applications, such as in fragment based loop modeling methods but also in various full structure build-up procedures. The applicability and performance of these approaches depend on the availability of short fragments in structure databanks. Results We studied the representation of protein loop fragments up to 14 residues in length. All possible query fragments found in sequence databases (Sequence Space) were clustered and cross referenced with available structural fragments in Protein Data Bank (Structure Space). We found that the expansion of PDB in the last few years resulted in a dense coverage of loop conformational fragments. For each loops of length 8 in the current Sequence Space there is at least one loop in Structure Space with 50% or higher sequence identity. By correlating sequence and structure clusters of loops we found that a 50% sequence identity generally guarantees structural similarity. These percentages of coverage at 50% sequence cutoff drop to 96, 94, 68, 53, 33 and 13% for loops of length 9, 10, 11, 12, 13, and 14, respectively. There is not a single loop in the current Sequence Space at any length up to 14 residues that is not matched with a conformational segment that shares at least 20% sequence identity. This minimum observed identity is 40% for loops of 12 residues or shorter and is as high as 50% for 10 residue or shorter loops. We also assessed the impact of rapidly growing sequence databanks on the estimated number of new loop conformations and found that while the number of sequentially unique sequence segments increased about six folds during the last five years there are almost no unique conformational segments among these up to 12 residues long fragments. Conclusion The results suggest that fragment based prediction approaches are not limited any more by the completeness of fragments in databanks but rather by the effective

  13. Estimating two-loop radiative effects in the MOLLER experiment

    SciTech Connect

    Aleksejevs, A. G.; Barkanova, S. G.; Zykunov, V. A.; Kuraev, E. A.

    2013-07-15

    Within the on-shell renormalization scheme, two-loop electroweak corrections to the parityviolating polarization asymmetry in the reaction e{sup -}e{sup -} {yields} e{sup -}e{sup -}({gamma}, {gamma}{gamma}) were estimated for the MOLLER experiment at JLab. The infrared divergence and the imaginary part of the amplitude were taken completely under control. Relevant compact expressions obtained by using asymptotic methods are free from unphysical parameters and are convenient for analysis and for numerical estimations. A numerical analysis revealed a significant scale of two-loop effects and the need for taking them into account in the MOLLER experiment.

  14. Gravity quantized: Loop quantum gravity with a scalar field

    SciTech Connect

    Domagala, Marcin; Kaminski, Wojciech; Giesel, Kristina; Lewandowski, Jerzy

    2010-11-15

    ...''but we do not have quantum gravity.'' This phrase is often used when analysis of a physical problem enters the regime in which quantum gravity effects should be taken into account. In fact, there are several models of the gravitational field coupled to (scalar) fields for which the quantization procedure can be completed using loop quantum gravity techniques. The model we present in this paper consists of the gravitational field coupled to a scalar field. The result has similar structure to the loop quantum cosmology models, except that it involves all the local degrees of freedom of the gravitational field because no symmetry reduction has been performed at the classical level.

  15. Kalman Orbit Optimized Loop Tracking

    NASA Technical Reports Server (NTRS)

    Young, Lawrence E.; Meehan, Thomas K.

    2011-01-01

    Under certain conditions of low signal power and/or high noise, there is insufficient signal to noise ratio (SNR) to close tracking loops with individual signals on orbiting Global Navigation Satellite System (GNSS) receivers. In addition, the processing power available from flight computers is not great enough to implement a conventional ultra-tight coupling tracking loop. This work provides a method to track GNSS signals at very low SNR without the penalty of requiring very high processor throughput to calculate the loop parameters. The Kalman Orbit-Optimized Loop (KOOL) tracking approach constitutes a filter with a dynamic model and using the aggregate of information from all tracked GNSS signals to close the tracking loop for each signal. For applications where there is not a good dynamic model, such as very low orbits where atmospheric drag models may not be adequate to achieve the required accuracy, aiding from an IMU (inertial measurement unit) or other sensor will be added. The KOOL approach is based on research JPL has done to allow signal recovery from weak and scintillating signals observed during the use of GPS signals for limb sounding of the Earth s atmosphere. That approach uses the onboard PVT (position, velocity, time) solution to generate predictions for the range, range rate, and acceleration of the low-SNR signal. The low- SNR signal data are captured by a directed open loop. KOOL builds on the previous open loop tracking by including feedback and observable generation from the weak-signal channels so that the MSR receiver will continue to track and provide PVT, range, and Doppler data, even when all channels have low SNR.

  16. Design and Modeling of a Variable Heat Rejection Radiator

    NASA Technical Reports Server (NTRS)

    Miller, Jennifer R.; Birur, Gajanana C.; Ganapathi, Gani B.; Sunada, Eric T.; Berisford, Daniel F.; Stephan, Ryan

    2011-01-01

    Variable Heat Rejection Radiator technology needed for future NASA human rated & robotic missions Primary objective is to enable a single loop architecture for human-rated missions (1) Radiators are typically sized for maximum heat load in the warmest continuous environment resulting in a large panel area (2) Large radiator area results in fluid being susceptible to freezing at low load in cold environment and typically results in a two-loop system (3) Dual loop architecture is approximately 18% heavier than single loop architecture (based on Orion thermal control system mass) (4) Single loop architecture requires adaptability to varying environments and heat loads

  17. Amodal Completion in Bonobos

    ERIC Educational Resources Information Center

    Nagasaka, Yasuo; Brooks, Daniel I.; Wasserman, Edward A.

    2010-01-01

    We trained two bonobos to discriminate among occluded, complete, and incomplete stimuli. The occluded stimulus comprised a pair of colored shapes, one of which appeared to occlude the other. The complete and incomplete stimuli involved the single shape that appeared to have been partially covered in the occluded stimulus; the complete stimulus…

  18. On the Convergence in Effective Loop Quantum Cosmology

    SciTech Connect

    Corichi, Alejandro; Vukasinac, Tatjana; Zapata, Jose Antonio

    2010-07-12

    In Loop Quantum Cosmology (LQC) there is a discreteness parameter {lambda}, that has been heuristically associated to a fundamental granularity of quantum geometry. It is also possible to consider {lambda} as a regulator in the same spirit as that used in lattice field theory, where it specifies a regular lattice in the real line. A particular quantization of the k = 0 FLRW loop cosmological model yields a completely solvable model, known as solvable loop quantum cosmology(sLQC). In this contribution, we consider effective classical theories motivated by sLQC and study their {lambda}-dependence, with a special interest on the limit {lambda}{yields}0 and the role of the evolution parameter in the convergence of such limit.

  19. Waves in Solar Coronal Loops

    NASA Astrophysics Data System (ADS)

    Wang, T. J.

    2016-02-01

    The corona is visible in the optical band only during a total solar eclipse or with a coronagraph. Coronal loops are believed to be plasma-filled closed magnetic flux anchored in the photosphere. Based on the temperature regime, they are generally classified into cool, warm, and hot loops. The magnetized coronal structures support propagation of various types of magnetohydrodynamics (MHD) waves. This chapter reviews the recent progress made in studies based on observations of four types of wave phenomena mainly occurring in coronal loops of active regions, including: flare-excited slow-mode waves; impulsively excited kink-mode waves; propagating slow magnetoacoustic waves; and ubiquitous propagating kink (Alfvénic) waves. This review not only comprehensively discusses these waves and coronal seismology but also topics that are newly emerging or hotly debated in order to provide the reader with useful guidance on further studies.

  20. Criteria for saturated magnetization loop

    NASA Astrophysics Data System (ADS)

    Harres, A.; Mikhov, M.; Skumryev, V.; Andrade, A. M. H. de; Schmidt, J. E.; Geshev, J.

    2016-03-01

    Proper estimation of magnetization curve parameters is vital in studying magnetic systems. In the present article, criteria for discrimination non-saturated (minor) from saturated (major) hysteresis loops are proposed. These employ the analysis of (i) derivatives of both ascending and descending branches of the loop, (ii) remanent magnetization curves, and (iii) thermomagnetic curves. Computational simulations are used in order to demonstrate their validity. Examples illustrating the applicability of these criteria to well-known real systems, namely Fe3O4 and Ni fine particles, are provided. We demonstrate that the anisotropy-field value estimated from a visual examination of an only apparently major hysteresis loop could be more than two times lower than the real one.

  1. Digital phase-lock loop

    NASA Technical Reports Server (NTRS)

    Thomas, Jr., Jess B. (Inventor)

    1991-01-01

    An improved digital phase lock loop incorporates several distinctive features that attain better performance at high loop gain and better phase accuracy. These features include: phase feedback to a number-controlled oscillator in addition to phase rate; analytical tracking of phase (both integer and fractional cycles); an amplitude-insensitive phase extractor; a more accurate method for extracting measured phase; a method for changing loop gain during a track without loss of lock; and a method for avoiding loss of sampled data during computation delay, while maintaining excellent tracking performance. The advantages of using phase and phase-rate feedback are demonstrated by comparing performance with that of rate-only feedback. Extraction of phase by the method of modeling provides accurate phase measurements even when the number-controlled oscillator phase is discontinuously updated.

  2. Wilson loops and QCD/string scattering amplitudes

    SciTech Connect

    Makeenko, Yuri; Olesen, Poul

    2009-07-15

    We generalize modern ideas about the duality between Wilson loops and scattering amplitudes in N=4 super Yang-Mills theory to large N QCD by deriving a general relation between QCD meson scattering amplitudes and Wilson loops. We then investigate properties of the open-string disk amplitude integrated over reparametrizations. When the Wilson-loop is approximated by the area behavior, we find that the QCD scattering amplitude is a convolution of the standard Koba-Nielsen integrand and a kernel. As usual poles originate from the first factor, whereas no (momentum-dependent) poles can arise from the kernel. We show that the kernel becomes a constant when the number of external particles becomes large. The usual Veneziano amplitude then emerges in the kinematical regime, where the Wilson loop can be reliably approximated by the area behavior. In this case, we obtain a direct duality between Wilson loops and scattering amplitudes when spatial variables and momenta are interchanged, in analogy with the N=4 super Yang-Mills theory case.

  3. Fast loop modeling for protein structures

    NASA Astrophysics Data System (ADS)

    Zhang, Jiong; Nguyen, Son; Shang, Yi; Xu, Dong; Kosztin, Ioan

    2015-03-01

    X-ray crystallography is the main method for determining 3D protein structures. In many cases, however, flexible loop regions of proteins cannot be resolved by this approach. This leads to incomplete structures in the protein data bank, preventing further computational study and analysis of these proteins. For instance, all-atom molecular dynamics (MD) simulation studies of structure-function relationship require complete protein structures. To address this shortcoming, we have developed and implemented an efficient computational method for building missing protein loops. The method is database driven and uses deep learning and multi-dimensional scaling algorithms. We have implemented the method as a simple stand-alone program, which can also be used as a plugin in existing molecular modeling software, e.g., VMD. The quality and stability of the generated structures are assessed and tested via energy scoring functions and by equilibrium MD simulations. The proposed method can also be used in template-based protein structure prediction. Work supported by the National Institutes of Health [R01 GM100701]. Computer time was provided by the University of Missouri Bioinformatics Consortium.

  4. Many Ways to Loop DNA

    PubMed Central

    Griffith, Jack D.

    2013-01-01

    In the 1960s, I developed methods for directly visualizing DNA and DNA-protein complexes using an electron microscope. This made it possible to examine the shape of DNA and to visualize proteins as they fold and loop DNA. Early applications included the first visualization of true nucleosomes and linkers and the demonstration that repeating tracts of adenines can cause a curvature in DNA. The binding of DNA repair proteins, including p53 and BRCA2, has been visualized at three- and four-way junctions in DNA. The trombone model of DNA replication was directly verified, and the looping of DNA at telomeres was discovered. PMID:24005675

  5. Open loop model for WDM links

    NASA Astrophysics Data System (ADS)

    D, Meena; Francis, Fredy; T, Sarath K.; E, Dipin; Srinivas, T.; K, Jayasree V.

    2014-10-01

    Wavelength Division Multiplexing (WDM) techniques overfibrelinks helps to exploit the high bandwidth capacity of single mode fibres. A typical WDM link consisting of laser source, multiplexer/demultiplexer, amplifier and detectoris considered for obtaining the open loop gain model of the link. The methodology used here is to obtain individual component models using mathematical and different curve fitting techniques. These individual models are then combined to obtain the WDM link model. The objective is to deduce a single variable model for the WDM link in terms of input current to system. Thus it provides a black box solution for a link. The Root Mean Square Error (RMSE) associated with each of the approximated models is given for comparison. This will help the designer to select the suitable WDM link model during a complex link design.

  6. Geothermal Loop Experimental Facility. Final report

    SciTech Connect

    Not Available

    1980-04-01

    Research at the Geothermal Loop Experimental Facility was successfully concluded in September 1979. In 13,000 hours of operation over a three and one half year period, the nominal 10 megawatt electrical equivalent GLEF provided the opportunity to identify problems in working with highly saline geothermal fluids and to develop solutions that could be applied to a commercial geothermal power plant producing electricity. A seven and one half year period beginning in April 1972, with early well flow testing and ending in September 1979, with the completion of extensive facility and reservoir operations is covered. During this period, the facility was designed, constructed and operated in several configurations. A comprehensive reference document, addressing or referencing documentation of all the key areas investigated is presented.

  7. Adjustment of Open-Loop Settings to Improve Closed-Loop Results in Type 1 Diabetes: A Multicenter Randomized Trial

    PubMed Central

    Dassau, Eyal; Brown, Sue A.; Basu, Ananda; Pinsker, Jordan E.; Kudva, Yogish C.; Gondhalekar, Ravi; Patek, Steve; Lv, Dayu; Schiavon, Michele; Lee, Joon Bok; Dalla Man, Chiara; Hinshaw, Ling; Castorino, Kristin; Mallad, Ashwini; Dadlani, Vikash; McCrady-Spitzer, Shelly K.; McElwee-Malloy, Molly; Wakeman, Christian A.; Bevier, Wendy C.; Bradley, Paige K.; Kovatchev, Boris; Cobelli, Claudio; Zisser, Howard C.

    2015-01-01

    Context: Closed-loop control (CLC) relies on an individual's open-loop insulin pump settings to initialize the system. Optimizing open-loop settings before using CLC usually requires significant time and effort. Objective: The objective was to investigate the effects of a one-time algorithmic adjustment of basal rate and insulin to carbohydrate ratio open-loop settings on the performance of CLC. Design: This study reports a multicenter, outpatient, randomized, crossover clinical trial. Patients: Thirty-seven adults with type 1 diabetes were enrolled at three clinical sites. Interventions: Each subject's insulin pump settings were subject to a one-time algorithmic adjustment based on 1 week of open-loop (i.e., home care) data collection. Subjects then underwent two 27-hour periods of CLC in random order with either unchanged (control) or algorithmic adjusted basal rate and carbohydrate ratio settings (adjusted) used to initialize the zone-model predictive control artificial pancreas controller. Subject's followed their usual meal-plan and had an unannounced exercise session. Main Outcomes and Measures: Time in the glucose range was 80–140 mg/dL, compared between both arms. Results: Thirty-two subjects completed the protocol. Median time in CLC was 25.3 hours. The median time in the 80–140 mg/dl range was similar in both groups (39.7% control, 44.2% adjusted). Subjects in both arms of CLC showed minimal time spent less than 70 mg/dl (median 1.34% and 1.37%, respectively). There were no significant differences more than 140 mg/dL. Conclusions: A one-time algorithmic adjustment of open-loop settings did not alter glucose control in a relatively short duration outpatient closed-loop study. The CLC system proved very robust and adaptable, with minimal (<2%) time spent in the hypoglycemic range in either arm. PMID:26204135

  8. 68. COMPLETED ASSEMBLY SHOWING BARGES, BRIDGE AND SUPPORT CARRIAGE AT ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    68. COMPLETED ASSEMBLY SHOWING BARGES, BRIDGE AND SUPPORT CARRIAGE AT THE BASE OF THE LAUNCHING SLAB LOOKING EAST, April 26, 1948. - Variable Angle Launcher Complex, Variable Angle Launcher, CA State Highway 39 at Morris Reservior, Azusa, Los Angeles County, CA

  9. Closed-Loop Neuromorphic Benchmarks.

    PubMed

    Stewart, Terrence C; DeWolf, Travis; Kleinhans, Ashley; Eliasmith, Chris

    2015-01-01

    Evaluating the effectiveness and performance of neuromorphic hardware is difficult. It is even more difficult when the task of interest is a closed-loop task; that is, a task where the output from the neuromorphic hardware affects some environment, which then in turn affects the hardware's future input. However, closed-loop situations are one of the primary potential uses of neuromorphic hardware. To address this, we present a methodology for generating closed-loop benchmarks that makes use of a hybrid of real physical embodiment and a type of "minimal" simulation. Minimal simulation has been shown to lead to robust real-world performance, while still maintaining the practical advantages of simulation, such as making it easy for the same benchmark to be used by many researchers. This method is flexible enough to allow researchers to explicitly modify the benchmarks to identify specific task domains where particular hardware excels. To demonstrate the method, we present a set of novel benchmarks that focus on motor control for an arbitrary system with unknown external forces. Using these benchmarks, we show that an error-driven learning rule can consistently improve motor control performance across a randomly generated family of closed-loop simulations, even when there are up to 15 interacting joints to be controlled. PMID:26696820

  10. Closing the Loop with Exercises

    ERIC Educational Resources Information Center

    Altizer, Andy

    2008-01-01

    Conducting exercises provides a critical bridge between the theory of an Emergency Action Plan and its effective implementation. When conducted properly, exercises can fill the gap between training and after-action review to close the preparedness loop--before an actual emergency occurs. Often exercises are planned and conducted on campus based on…

  11. Telomeres thrown for a loop.

    PubMed

    Haber, James E

    2004-11-19

    A remarkable paper from the de Lange lab (Wang et al., 2004) in a recent issue of Cell reveals that homologous recombination can result in the abrupt shortening of telomeres in a process that appears to involve reciprocal crossing over within the t-loop structure that protects chromosome ends.

  12. Closed-Loop Neuromorphic Benchmarks

    PubMed Central

    Stewart, Terrence C.; DeWolf, Travis; Kleinhans, Ashley; Eliasmith, Chris

    2015-01-01

    Evaluating the effectiveness and performance of neuromorphic hardware is difficult. It is even more difficult when the task of interest is a closed-loop task; that is, a task where the output from the neuromorphic hardware affects some environment, which then in turn affects the hardware's future input. However, closed-loop situations are one of the primary potential uses of neuromorphic hardware. To address this, we present a methodology for generating closed-loop benchmarks that makes use of a hybrid of real physical embodiment and a type of “minimal” simulation. Minimal simulation has been shown to lead to robust real-world performance, while still maintaining the practical advantages of simulation, such as making it easy for the same benchmark to be used by many researchers. This method is flexible enough to allow researchers to explicitly modify the benchmarks to identify specific task domains where particular hardware excels. To demonstrate the method, we present a set of novel benchmarks that focus on motor control for an arbitrary system with unknown external forces. Using these benchmarks, we show that an error-driven learning rule can consistently improve motor control performance across a randomly generated family of closed-loop simulations, even when there are up to 15 interacting joints to be controlled. PMID:26696820

  13. Latino College Completion: Oklahoma

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  14. Latino College Completion: Arizona

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  15. Latino College Completion: Minnesota

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  16. Latino College Completion: Nevada

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  17. Latino College Completion: Virginia

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  18. Latino College Completion: Texas

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  19. Latino College Completion: Maryland

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  20. On a Lagrangian Reduction and a Deformation of Completely Integrable Systems

    NASA Astrophysics Data System (ADS)

    Arnaudon, Alexis

    2016-10-01

    We develop a theory of Lagrangian reduction on loop groups for completely integrable systems after having exchanged the role of the space and time variables in the multi-time interpretation of integrable hierarchies. We then insert the Sobolev norm H^1 in the Lagrangian and derive a deformation of the corresponding hierarchies. The integrability of the deformed equations is altered, and a notion of weak integrability is introduced. We implement this scheme in the AKNS and SO(3) hierarchies and obtain known and new equations. Among them, we found two important equations, the Camassa-Holm equation, viewed as a deformation of the KdV equation, and a deformation of the NLS equation.

  1. On a Lagrangian Reduction and a Deformation of Completely Integrable Systems

    NASA Astrophysics Data System (ADS)

    Arnaudon, Alexis

    2016-04-01

    We develop a theory of Lagrangian reduction on loop groups for completely integrable systems after having exchanged the role of the space and time variables in the multi-time interpretation of integrable hierarchies. We then insert the Sobolev norm H^1 in the Lagrangian and derive a deformation of the corresponding hierarchies. The integrability of the deformed equations is altered, and a notion of weak integrability is introduced. We implement this scheme in the AKNS and SO(3) hierarchies and obtain known and new equations. Among them, we found two important equations, the Camassa-Holm equation, viewed as a deformation of the KdV equation, and a deformation of the NLS equation.

  2. Evolution in a Braided Loop Ensemble

    NASA Video Gallery

    This braided loop has several loops near the 'base' that appear to be unwinding with significant apparent outflow. This is evidence of untwisting, and the braided structure also seeming to unwind w...

  3. Noise Performance Of A Digital Tanlock Loop

    NASA Technical Reports Server (NTRS)

    Hurd, W. J.; Pomalaza-Raez, C. A.

    1988-01-01

    Slight improvement over sinusoidal phase-lock loop achieved. Report discusses theoretical studies and numerical simulations of performance of digital tangent phase-lock loop (DTL), in presence of noise.

  4. [Therapeutic applications of closed-loop brain stimulation. Success and expectations].

    PubMed

    Zrenner, C; Ziemann, U

    2015-12-01

    The therapeutic application of brain stimulation is still limited to relatively few indications and small groups of patients due to variable efficacy. Individualization of stimulation parameters by employing a closed-loop system, i.e. synchronization of stimulation with endogenous brain activity with millisecond precision, has the potential to significantly improve the therapeutic efficacy when compared to open-loop systems. In this article the theoretical and experimental results are reviewed including first clinical trials that support the superiority of closed-loop brain stimulation, fundamental aspects in the development of closed loop methods are discussed and clinical studies which could quantify an increase in effectiveness are summarized. A significant increase in the indications for therapeutic applications of closed-loop systems is to be expected in the near future. PMID:26567042

  5. Characterization of Intensity Variations Along Fe XIV Coronal Loops - A Case Study

    NASA Astrophysics Data System (ADS)

    Costa, Andrea; Stenborg, Guillermo

    2004-08-01

    We discuss a method, and corresponding results, to analyze the dynamics of localized small-scale coronal (post-flare) loops observed with the MICA (Mirror Coronagraph for Argentina) telescope in the well-known green coronal line at 530.3 nm. In particular, we designed a procedure to measure intensity variations along the structure of a loop, both in space and time. The method was applied to a loop on the southwest limb on green-line images taken on October 1st, 2001 with a cadence of about one per minute. Significant coronal variability was detected in a compact loop system suggesting different types of plasma flow. One of them shows a brightening at the top, which moves down along the axis of the loop with mean velocities that suggest scenarios of high-speed plasma flows. The results obtained allow the flow inside coronal structures to be characterized and theoretical descriptions related to different physical scenarios to be compared.

  6. Double loop control strategy with different time steps based on human characteristics.

    PubMed

    Gu, Gwang Min; Lee, Jinoh; Kim, Jung

    2012-01-01

    This paper proposes a cooperative control strategy in consideration of the force sensitivity of human. The strategy consists of two loops: one is the intention estimation loop whose sampling time can be variable in order to investigate the effect of the sampling time; the other is the position control loop with fixed time step. A high sampling rate is not necessary for the intention estimation loop due to the bandwidth of the mechanoreceptors in humans. In addition, the force sensor implemented in the robot is sensitive to the noise induced from the sensor itself and tremor of the human. Multiple experiments were performed with the experimental protocol using various time steps of the intention estimation loop to find the suitable sampling times in physical human robot interaction. The task involves pull-and-push movement with a two-degree-of-freedom robot, and the norm of the interaction force was obtained for each experiment as the measure of the cooperative control performance.

  7. Fragmentation of cosmic-string loops

    NASA Technical Reports Server (NTRS)

    York, Thomas

    1989-01-01

    The fragmentation of cosmic string loops is discussed, and the results of a simulation of this process are presented. The simulation can evolve any of a large class of loops essentially exactly, including allowing fragments that collide to join together. Such reconnection enhances the production of small fragments, but not drastically. With or without reconnections, the fragmentation process produces a collection of nonself-intersecting loops whose typical length is on the order of the persistence length of the initial loop.

  8. Complete binasal hemianopia

    PubMed Central

    Pomeranz, Howard D.; Smith, Kyle H.

    2014-01-01

    Binasal hemianopia is a rarely encountered visual field defect. We examined two asymptomatic female patients, aged 17 and 83, with complete binasal hemianopia. Both patients had unremarkable eye exams except for the visual field deficits and minimally reduced visual acuity and color vision. Both patients had normal neuroimaging. These are the first reported cases of complete binasal visual field defects without an identifiable ocular or neurologic cause. PMID:25484511

  9. Hard thermal loops in static external fields

    SciTech Connect

    Frenkel, J.; Takahashi, N.; Pereira, S. H.

    2009-04-15

    We examine, in the imaginary-time formalism, the high temperature behavior of n-point thermal loops in static Yang-Mills and gravitational fields. We show that in this regime, any hard thermal loop gives the same leading contribution as the one obtained by evaluating the loop integral at zero external energies and momenta.

  10. The Thai Phase III HIV Type 1 Vaccine trial (RV144) regimen induces antibodies that target conserved regions within the V2 loop of gp120.

    PubMed

    Karasavvas, Nicos; Billings, Erik; Rao, Mangala; Williams, Constance; Zolla-Pazner, Susan; Bailer, Robert T; Koup, Richard A; Madnote, Sirinan; Arworn, Duangnapa; Shen, Xiaoying; Tomaras, Georgia D; Currier, Jeffrey R; Jiang, Mike; Magaret, Craig; Andrews, Charla; Gottardo, Raphael; Gilbert, Peter; Cardozo, Timothy J; Rerks-Ngarm, Supachai; Nitayaphan, Sorachai; Pitisuttithum, Punnee; Kaewkungwal, Jaranit; Paris, Robert; Greene, Kelli; Gao, Hongmei; Gurunathan, Sanjay; Tartaglia, Jim; Sinangil, Faruk; Korber, Bette T; Montefiori, David C; Mascola, John R; Robb, Merlin L; Haynes, Barton F; Ngauy, Viseth; Michael, Nelson L; Kim, Jerome H; de Souza, Mark S

    2012-11-01

    The Thai Phase III clinical trial (RV144) showed modest efficacy in preventing HIV-1 acquisition. Plasma collected from HIV-1-uninfected trial participants completing all injections with ALVAC-HIV (vCP1521) prime and AIDSVAX B/E boost were tested for antibody responses against HIV-1 gp120 envelope (Env). Peptide microarray analysis from six HIV-1 subtypes and group M consensus showed that vaccination induced antibody responses to the second variable (V2) loop of gp120 of multiple subtypes. We further evaluated V2 responses by ELISA and surface plasmon resonance using cyclic (Cyc) and linear V2 loop peptides. Thirty-one of 32 vaccine recipients tested (97%) had antibody responses against Cyc V2 at 2 weeks postimmunization with a reciprocal geometric mean titer (GMT) of 1100 (range: 200-3200). The frequency of detecting plasma V2 antibodies declined to 19% at 28 weeks post-last injection (GMT: 110, range: 100-200). Antibody responses targeted the mid-region of the V2 loop that contains conserved epitopes and has the amino acid sequence KQKVHALFYKLDIVPI (HXB2 Numbering sequence 169-184). Valine at position 172 was critical for antibody binding. The frequency of V3 responses at 2 weeks postimmunization was modest (18/32, 56%) with a GMT of 185 (range: 100-800). In contrast, naturally infected HIV-1 individuals had a lower frequency of antibody responses to V2 (10/20, 50%; p=0.003) and a higher frequency of responses to V3 (19/20, 95%), with GMTs of 400 (range: 100-3200) and 3570 (range: 200-12,800), respectively. RV144 vaccination induced antibodies that targeted a region of the V2 loop that contains conserved epitopes. Early HIV-1 transmission events involve V2 loop interactions, raising the possibility that anti-V2 antibodies in RV144 may have contributed to viral inhibition.

  11. Microgyroscope with closed loop output

    NASA Technical Reports Server (NTRS)

    Challoner, A. Dorian (Inventor); Gutierrez, Roman C. (Inventor); Tang, Tony K. (Inventor); Cargille, Donald R. (Inventor)

    2002-01-01

    A micro-gyroscope (10) having closed loop operation by a control voltage (V.sub.TY), that is demodulated by an output signal of the sense electrodes (S1, S2), providing Coriolis torque rebalance to prevent displacement of the micro-gyroscope (10) on the output axis (y-axis). The present invention provides wide-band, closed-loop operation for a micro-gyroscope (10) and allows the drive frequency to be closely tuned to a high Q sense axis resonance. A differential sense signal (S1-S2) is compensated and fed back by differentially changing the voltage on the drive electrodes to rebalance Coriolis torque. The feedback signal is demodulated in phase with the drive axis signal (K.sub..omega..crclbar..sub.x) to produce a measure of the Coriolis force.

  12. The Statistical Loop Analyzer (SLA)

    NASA Technical Reports Server (NTRS)

    Lindsey, W. C.

    1985-01-01

    The statistical loop analyzer (SLA) is designed to automatically measure the acquisition, tracking and frequency stability performance characteristics of symbol synchronizers, code synchronizers, carrier tracking loops, and coherent transponders. Automated phase lock and system level tests can also be made using the SLA. Standard baseband, carrier and spread spectrum modulation techniques can be accomodated. Through the SLA's phase error jitter and cycle slip measurements the acquisition and tracking thresholds of the unit under test are determined; any false phase and frequency lock events are statistically analyzed and reported in the SLA output in probabilistic terms. Automated signal drop out tests can be performed in order to trouble shoot algorithms and evaluate the reacquisition statistics of the unit under test. Cycle slip rates and cycle slip probabilities can be measured using the SLA. These measurements, combined with bit error probability measurements, are all that are needed to fully characterize the acquisition and tracking performance of a digital communication system.

  13. Lock detection in Costas loops

    NASA Technical Reports Server (NTRS)

    Mileant, A.; Hinedi, S.

    1992-01-01

    Previous analyses of lock detector algorithms for Costas loops have ignored the effects of the inherent correlation between samples of the phase error process. In this paper, both analysis and simulations are used to quantify the effects of phase correlation on lock detection for the 'square law' and 'absolute value' type detectors. Results are obtained which depict the lock detection probability as a function of loop signal-to-noise ratio for a given false alarm rate. It is shown that the square law detector experiences less degradation due to phase jitter than the absolute value detector and that the degradation in detector signal-to-noise ratio is more pronounced for squarewave than for sinewave signals.

  14. Lock detection in Costas loops

    NASA Astrophysics Data System (ADS)

    Mileant, A.; Hinedi, S.

    1992-03-01

    Previous analyses of lock detector algorithms for Costas loops have ignored the effects of the inherent correlation between samples of the phase error process. In this paper, both analysis and simulations are used to quantify the effects of phase correlation on lock detection for the 'square law' and 'absolute value' type detectors. Results are obtained which depict the lock detection probability as a function of loop signal-to-noise ratio for a given false alarm rate. It is shown that the square law detector experiences less degradation due to phase jitter than the absolute value detector and that the degradation in detector signal-to-noise ratio is more pronounced for squarewave than for sinewave signals.

  15. Loop Diuretics in Clinical Practice.

    PubMed

    Oh, Se Won; Han, Sang Youb

    2015-06-01

    Diuretics are commonly used to control edema across various clinical fields. Diuretics inhibit sodium reabsorption in specific renal tubules, resulting in increased urinary sodium and water excretion. Loop diuretics are the most potent diuretics. In this article, we review five important aspects of loop diuretics, in particular furosemide, which must be considered when prescribing this medicine: (1) oral versus intravenous treatment, (2) dosage, (3) continuous versus bolus infusion, (4) application in chronic kidney disease patients, and (5) side effects. The bioavailability of furosemide differs between oral and intravenous therapy. Additionally, the threshold and ceiling doses of furosemide differ according to the particular clinical condition of the patient, for example in patients with severe edema or chronic kidney disease. To maximize the efficiency of furosemide, a clear understanding of how the mode of delivery will impact bioavailability and the required dosage is necessary.

  16. Loop Diuretics in Clinical Practice

    PubMed Central

    Oh, Se Won

    2015-01-01

    Diuretics are commonly used to control edema across various clinical fields. Diuretics inhibit sodium reabsorption in specific renal tubules, resulting in increased urinary sodium and water excretion. Loop diuretics are the most potent diuretics. In this article, we review five important aspects of loop diuretics, in particular furosemide, which must be considered when prescribing this medicine: (1) oral versus intravenous treatment, (2) dosage, (3) continuous versus bolus infusion, (4) application in chronic kidney disease patients, and (5) side effects. The bioavailability of furosemide differs between oral and intravenous therapy. Additionally, the threshold and ceiling doses of furosemide differ according to the particular clinical condition of the patient, for example in patients with severe edema or chronic kidney disease. To maximize the efficiency of furosemide, a clear understanding of how the mode of delivery will impact bioavailability and the required dosage is necessary. PMID:26240596

  17. Deconfinement and virtual quark loops

    NASA Astrophysics Data System (ADS)

    Çelik, T.; Engels, J.; Satz, H.

    1983-12-01

    We calculate paer Monte Carlo evaluation on an 83 × 3 lattice the energy density ɛG of the gluon sector of QCD, including virtual quark loops up to the fourth power in the hopping parameter expansion. For light quarks of one flavour, we observe at T/ΛL 95 +/- 10 a rapid variation of ɛG in T, accompanied by strong fluctuations from iteration to iteration. as clear signal of the deconfinement transition.

  18. DNA Looping, Supercoiling and Tension

    NASA Astrophysics Data System (ADS)

    Finzi, Laura

    2007-11-01

    In complex organisms, activation or repression of gene expression by proteins bound to enhancer or silencer elements located several kilobases away from the promoter is a well recognized phenomenon. However, a mechanistic understanding of any of these multiprotein interactions is still incomplete. Part of the difficulty in characterizing long-range interactions is the complexity of the regulatory systems and also an underestimation of the effect of DNA supercoiling and tension. Supercoiling is expected to promote interactions between DNA sites because it winds the DNA into compact plectonemes in which distant DNA segments more frequently draw close. The idea that DNA is also under various levels of tension is becoming more widely accepted. Forces that stretch the double helix in vivo are the electrostatic repulsion among the negatively charged phosphate groups along the DNA backbone, the action of motor enzymes perhaps acting upon a topologically constrained sequence of DNA or chromosome segregation during cell mitosis following DNA replication. Presently, little is known about the tension acting on DNA in vivo, but characterization of how physiological regulatory processes, such as loop formation, depend on DNA tension in vitro will indicate the stretching force regimes likely to exist in vivo. In this light, the well studied CI protein of bacteriophage l, which was recently found to cause a of 3.8 kbp loop in DNA, is an ideal system in which to characterize long-range gene regulation. The large size of the loop lends itself to single-molecule techniques, which allow characterization of the dynamics of CI-mediated l DNA looping under controlled levels of supercoiling and tension. Such experiments are being used to discover the principles of long-range interactions in l and in more complex systems.

  19. Quantum reduced loop gravity and the foundation of loop quantum cosmology

    NASA Astrophysics Data System (ADS)

    Alesci, Emanuele; Cianfrani, Francesco

    2016-06-01

    Quantum reduced loop gravity is a promising framework for linking loop quantum gravity and the effective semiclassical dynamics of loop quantum cosmology. We review its basic achievements and its main perspectives, outlining how it provides a quantum description of the Universe in terms of a cuboidal graph which constitutes the proper framework for applying loop techniques in a cosmological setting.

  20. Two-loop quantum gravity

    NASA Astrophysics Data System (ADS)

    van de Ven, Anton E. M.

    1992-07-01

    We prove the existence of a nonrenormalizable infinity in the two-loop effective action of perturbative quantum gravity by means of an explicit calculation. Our final result agrees with that obtained by earlier authors. We use the background-field method in coordinate space, combined with dimensional regularization and a heat kernel representation for the propagators. General covariance is manifestly preserved. Only vacuum graphs in the presence of an on-shell background metric need to be calculated. We extend the background covariant harmonic gauge to include terms nonlinear in the quantum gravitational fields and allow for general reparametrizations of those fields. For a particular gauge choice and field parametrization only two three-graviton and six four-graviton vertices are present in the action. Calculational labor is further reduced by restricting to backgrounds, which are not only Ricci-flat, but satisfy an additional constraint bilinear in the Weyl tensor. To handle the still formidable amount of algebra, we use the symbolic manipulation program FORM. We checked that the on-shell two-loop effective action is in fact independent of all gauge and field redefinition parameters. A two-loop analysis for Yang-Mills fields is included as well, since in that case we can give full details as well as simplify earlier analyses.

  1. Loops in inflationary correlation functions

    NASA Astrophysics Data System (ADS)

    Tanaka, Takahiro; Urakawa, Yuko

    2013-12-01

    We review the recent progress regarding the loop corrections to the correlation functions in the inflationary universe. A naive perturbation theory predicts that the loop corrections generated during inflation suffer from various infrared (IR) pathologies. Introducing an IR cutoff by hand is neither satisfactory nor enough to fix the problem of a secular growth, which may ruin the predictive power of inflation models if the inflation lasts sufficiently long. We discuss the origin of the IR divergences and explore the regularity conditions of the loop corrections for the adiabatic perturbation, the iso-curvature perturbation, and the tensor perturbation, in turn. These three kinds of perturbations have qualitative differences, but in discussing the IR regularity there is a feature common to all cases, which is the importance of the proper identification of observable quantities. Genuinely, observable quantities should respect the gauge invariance from the view point of a local observer. Interestingly, we find that the requirement of the IR regularity restricts the allowed quantum states.

  2. Face-Mask Removal: Movement and Time Associated With Cutting of the Loop Straps

    PubMed Central

    Norkus, Susan A.; Armstrong, Charles W.; Kleiner, Douglas M.

    2003-01-01

    Objective: To quantify the amount of helmet movement, time for task completion, tool satisfaction, and overall efficiency for various face-mask removal tools during football helmet face-mask removal. Design and Setting: Each subject performed one trial with the anvil pruner (AP), Face Mask Extractor (FME), PVC pipe cutter (PVC), and Trainer's Angel (TA). Each subject cut through 4 loop straps and removed the face mask while kneeling behind the athlete's head. Subjects: Twenty-nine certified athletic trainers (age = 29.5 ± 6.2 years, athletic training experience = 6.3 ± 5.0 years). Measurements: Time to complete the task was recorded. Total range of motion and total movement of the helmet were assessed using a 6-camera, 3-dimensional motion-capture system. Satisfaction scores were measured for each subject for each tool. Efficiency scores were calculated using time and total helmet-movement data. Results: When using the FME, subjects were significantly faster than with all other tools (P < .05), and when using the AP and TA, they were significantly faster than with the PVC. No differences were noted between tools in either movement variable. Significant differences were noted for satisfaction (P < .05) for all comparisons except TA versus AP. Efficiency scores were FME, 11.6; AP, 14.3; TA, 14.5; and PVC, 22.9, with lower scores identifying increased efficiency. Conclusions: In general, subjects using the FME were superior in all variables except the movement variables. Future researchers should assess the removal task using specific protocols to determine whether the tools truly differ in terms of the movement created. PMID:12937522

  3. Gravitational radiation from realistic cosmic string loops

    NASA Astrophysics Data System (ADS)

    Casper, Paul; Allen, Bruce

    1995-10-01

    We examine the rates at which energy and momentum are radiated into gravitational waves by a large set of realistic cosmic string loops. The string loops are generated by numerically evolving parent loops with different initial conditions forward in time until they self-intersect, fragmenting into two child loops. The fragmentation of the child loops is followed recursively until only non-self-intersecting loops remain. The properties of the final non-self-intersecting loops are found to be independent of the initial conditions of the parent loops. We have calculated the radiated energy and momentum for a total of 11 625 stable child loops. We find that the majority of the final loops do not radiate significant amounts of spatial momentum. The velocity gained due to the rocket effect is typically small compared to the center-of-mass velocity of the fragmented loops. The distribution of gravitatoinal radiation rates in the center of mass frame of the loops, γ0≡(Gμ2)-1ΔE/Δτ, is strongly peaked in the range γ0=45-55 however, there are no loops found with γ0<40. Because the radiated spatial momentum is small, the distribution of gravitational radiation rates appears roughly the same in any reference frame. We conjecture that in the center-of-mass frame there is a lower bound γ0min>0 for the radiation rate from cosmic string loops. In a second conjecture, we identify a candidate for the loop with the minimal radiation rate and suggest that γ0min~=39.003.

  4. Multi-loop automatic control systems with several control inputs and their application for maintaining steam temperature in once-through boilers

    NASA Astrophysics Data System (ADS)

    Bilenko, V. A.

    2011-10-01

    The class of multi-loop automatic control systems is considered in which several control inputs are produced for maintaining the main controlled quantity. It is shown that the methods developed for well-known multi-loop structures with several controlled variables can be used in analyzing and synthesizing such systems. It is demonstrated that, if multi-loop automatic control systems producing several control inputs and comprising local automatic control systems with several controlled variables contain inertial loops separated by a low-inertia leading loop, then such loops can be decoupled by frequency. A multi-loop system for automatically controlling steam temperature in a once-through boiler is studied. Peculiarities connected with implementation of such structures are described taking into account the design features of boiler equipment and current requirements for setting up technological modes of operation.

  5. Monitoring Digital Closed-Loop Feedback Systems

    NASA Technical Reports Server (NTRS)

    Katz, Richard; Kleyner, Igor

    2011-01-01

    A technique of monitoring digital closed-loop feedback systems has been conceived. The basic idea is to obtain information on the performances of closed-loop feedback circuits in such systems to aid in the determination of the functionality and integrity of the circuits and of performance margins. The need for this technique arises as follows: Some modern digital systems include feedback circuits that enable other circuits to perform with precision and are tolerant of changes in environment and the device s parameters. For example, in a precision timing circuit, it is desirable to make the circuit insensitive to variability as a result of the manufacture of circuit components and to the effects of temperature, voltage, radiation, and aging. However, such a design can also result in masking the indications of damaged and/or deteriorating components. The present technique incorporates test circuitry and associated engineering-telemetry circuitry into an embedded system to monitor the closed-loop feedback circuits, using spare gates that are often available in field programmable gate arrays (FPGAs). This technique enables a test engineer to determine the amount of performance margin in the system, detect out of family circuit performance, and determine one or more trend(s) in the performance of the system. In one system to which the technique has been applied, an ultra-stable oscillator is used as a reference for internal adjustment of 12 time-to-digital converters (TDCs). The feedback circuit produces a pulse-width-modulated signal that is fed as a control input into an amplifier, which controls the circuit s operating voltage. If the circuit s gates are determined to be operating too slowly or rapidly when their timing is compared with that of the reference signal, then the pulse width increases or decreases, respectively, thereby commanding the amplifier to increase or reduce, respectively, its output level, and "adjust" the speed of the circuits. The nominal

  6. Coannihilation with a chargino and gauge boson pair production at one-loop

    SciTech Connect

    Baro, N.; Chalons, G.; Hao, Sun

    2010-02-10

    We present a complete calculation of the electroweak one-loop corrections to the relic density within the MSSM framework. In the context of the neutralino as dark matter candidate, we review different scenarios of annihilation and coannihilation with a chargino. In particular we investigate predictions for the annihilation into gauge boson pairs for different kinds of neutralino: bino-, wino- and higgsino-like. We present some interesting effects which are not present at tree-level and show up at one-loop. To deal with the large number of diagrams occurring in the calculations, we have developed an automatic tool for the computation at one-loop of any process in the MSSM. We have implemented a complete on-shell gauge invariant renormalization scheme, with the possibility of switching to other schemes. We emphasize the variations due to the choice of the renormalization scheme, in particular the one-loop definition of the parameter tan beta.

  7. Premeasured Chordal Loops for Mitral Valve Repair.

    PubMed

    Gillinov, Marc; Quinn, Reed; Kerendi, Faraz; Gaudiani, Vince; Shemin, Richard; Barnhart, Glenn; Raines, Edward; Gerdisch, Marc W; Banbury, Michael

    2016-09-01

    Premeasured expanded polytetrafluoroethylene chordal loops with integrated sutures for attachment to the papillary muscle and leaflet edges facilitate correction of mitral valve prolapse. Configured as a group of 3 loops (length range 12 to 24 mm), the loops are attached to a pledget that is passed through the papillary muscle and tied. Each of the loops has 2 sutures with attached needles; these needles are passed through the free edge of the leaflet and then the sutures are tied to each other, securing the chordal loop to the leaflet. PMID:27549563

  8. Subscriber loop optical distribution architecture: a cost-effective TDM/TDMA subscriber loop system

    NASA Astrophysics Data System (ADS)

    Rueda, Javier; Eldering, Charles A.

    1992-02-01

    While it is clear that the development of the laser and low loss optical fiber has had an unmistakable impact on the field of telecommunications, the deployment of optical fiber in the subscriber (local) loop is an especially challenging task. It requires development of low cost equipment that will initially be used at low bit rates (< few tens of Mb/s) due to the fact that basic telephone service does not require more than 64 kb/s per subscriber. Transmission of TV data, in either analog or digital form, will make more efficient use of the fiber bandwidth and generate additional revenues. But as seen from the perspective of the telephony industry, basic telephone services are the principal source of revenue and economic justification for the installation of subscriber loop fiber systems. For large scale deployment in the subscriber loop, the fiber optic system must provide basic telephone services with equal or better performance at a cost that is competitive with that of existing copper pair technology. In this paper we examine a number of possible fiber-to-the-home (FTTH) and fiber-to-the-curb (FTTC) architectures, and present an architecture for urban areas that is best classified as fiber-to-the-building (FTTB). We examine the costs and performance characteristics of the various networks. We show how demographic information can be used to optimize the capacity of the remote terminals. It is shown that for the demography of Spain (where in urban areas the majority of the population resides in apartment buildings with 10 or more dwellings) a remote terminal with a variable subscriber capacity presents a cost savings over remote terminals with a fixed number of subscriber channels.

  9. Revisiting antibody modeling assessment for CDR-H3 loop

    PubMed Central

    Nishigami, Hiroshi; Kamiya, Narutoshi; Nakamura, Haruki

    2016-01-01

    The antigen-binding site of antibodies, also known as complementarity-determining region (CDR), has hypervariable sequence properties. In particular, the third CDR loop of the heavy chain, CDR-H3, has such variability in its sequence, length, and conformation that ordinary modeling techniques cannot build a high-quality structure. At Stage 2 of the Second Antibody Modeling Assessment (AMA-II) held in 2013, the model structures of the CDR-H3 loops were submitted by the seven modelers and were critically assessed. After our participation in AMA-II, we rebuilt one of the long CDR-H3 loops with 13 residues (A52 antibody) by a more precise method, using enhanced conformational sampling with the explicit water model, as compared to our previous method employed at AMA-II. The current stable models obtained from the free energy landscape at 300 K include structures similar to the X-ray crystal structures. Those models were not built in our previous work at AMA-II. The current free energy landscape suggested that the CDR-H3 loop structures in the crystal are not stable in solution, but they are stabilized by the crystal packing effect. PMID:27515703

  10. Concerted loop motion triggers induced fit of FepA to ferric enterobactin.

    PubMed

    Smallwood, Chuck R; Jordan, Lorne; Trinh, Vy; Schuerch, Daniel W; Gala, Amparo; Hanson, Mathew; Hanson, Matthew; Shipelskiy, Yan; Majumdar, Aritri; Newton, Salete M C; Klebba, Phillip E

    2014-07-01

    Spectroscopic analyses of fluorophore-labeled Escherichia coli FepA described dynamic actions of its surface loops during binding and transport of ferric enterobactin (FeEnt). When FeEnt bound to fluoresceinated FepA, in living cells or outer membrane fragments, quenching of fluorophore emissions reflected conformational motion of the external vestibular loops. We reacted Cys sulfhydryls in seven surface loops (L2, L3, L4, L5, L7 L8, and L11) with fluorophore maleimides. The target residues had different accessibilities, and the labeled loops themselves showed variable extents of quenching and rates of motion during ligand binding. The vestibular loops closed around FeEnt in about a second, in the order L3 > L11 > L7 > L2 > L5 > L8 > L4. This sequence suggested that the loops bind the metal complex like the fingers of two hands closing on an object, by individually adsorbing to the iron chelate. Fluorescence from L3 followed a biphasic exponential decay as FeEnt bound, but fluorescence from all the other loops followed single exponential decay processes. After binding, the restoration of fluorescence intensity (from any of the labeled loops) mirrored cellular uptake that depleted FeEnt from solution. Fluorescence microscopic images also showed FeEnt transport, and demonstrated that ferric siderophore uptake uniformly occurs throughout outer membrane, including at the poles of the cells, despite the fact that TonB, its inner membrane transport partner, was not detectable at the poles.

  11. Chemical Looping Technology: Oxygen Carrier Characteristics.

    PubMed

    Luo, Siwei; Zeng, Liang; Fan, Liang-Shih

    2015-01-01

    Chemical looping processes are characterized as promising carbonaceous fuel conversion technologies with the advantages of manageable CO2 capture and high energy conversion efficiency. Depending on the chemical looping reaction products generated, chemical looping technologies generally can be grouped into two types: chemical looping full oxidation (CLFO) and chemical looping partial oxidation (CLPO). In CLFO, carbonaceous fuels are fully oxidized to CO2 and H2O, as typically represented by chemical looping combustion with electricity as the primary product. In CLPO, however, carbonaceous fuels are partially oxidized, as typically represented by chemical looping gasification with syngas or hydrogen as the primary product. Both CLFO and CLPO share similar operational features; however, the optimum process configurations and the specific oxygen carriers used between them can vary significantly. Progress in both CLFO and CLPO is reviewed and analyzed with specific focus on oxygen carrier developments that characterize these technologies.

  12. Chemical Looping Technology: Oxygen Carrier Characteristics.

    PubMed

    Luo, Siwei; Zeng, Liang; Fan, Liang-Shih

    2015-01-01

    Chemical looping processes are characterized as promising carbonaceous fuel conversion technologies with the advantages of manageable CO2 capture and high energy conversion efficiency. Depending on the chemical looping reaction products generated, chemical looping technologies generally can be grouped into two types: chemical looping full oxidation (CLFO) and chemical looping partial oxidation (CLPO). In CLFO, carbonaceous fuels are fully oxidized to CO2 and H2O, as typically represented by chemical looping combustion with electricity as the primary product. In CLPO, however, carbonaceous fuels are partially oxidized, as typically represented by chemical looping gasification with syngas or hydrogen as the primary product. Both CLFO and CLPO share similar operational features; however, the optimum process configurations and the specific oxygen carriers used between them can vary significantly. Progress in both CLFO and CLPO is reviewed and analyzed with specific focus on oxygen carrier developments that characterize these technologies. PMID:25898071

  13. High-temperature helium-loop facility

    SciTech Connect

    Tokarz, R.D.

    1981-09-01

    The high-temperature helium loop is a facility for materials testing in ultrapure helium gas at high temperatures. The closed loop system is capable of recirculating high-purity helium or helium with controlled impurities. The gas loop maximum operating conditions are as follows: 300 psi pressure, 500 lb/h flow rate, and 2100/sup 0/F temperature. The two test sections can accept samples up to 3.5 in. diameter and 5 ft long. The gas loop is fully instrumented to continuously monitor all parameters of loop operation as well as helium impurities. The loop is fully automated to operate continuously and requires only a daily servicing by a qualified operator to replenish recorder charts and helium makeup gas. Because of its versatility and high degree of parameter control, the helium loop is applicable to many types of materials research. This report describes the test apparatus, operating parameters, peripheral systems, and instrumentation system.

  14. Hyperstaticity and loops in frictional granular packings

    NASA Astrophysics Data System (ADS)

    Tordesillas, Antoinette; Lam, Edward; Metzger, Philip T.

    2009-06-01

    The hyperstatic nature of granular packings of perfectly rigid disks is analyzed algebraically and through numerical simulation. The elementary loops of grains emerge as a fundamental element in addressing hyperstaticity. Loops consisting of an odd number of grains behave differently than those with an even number. For odd loops, the latent stresses are exterior and are characterized by the sum of frictional forces around each loop. For even loops, the latent stresses are interior and are characterized by the alternating sum of frictional forces around each loop. The statistics of these two types of loop sums are found to be Gibbsian with a "temperature" that is linear with the friction coefficient μ when μ<1.

  15. Systematic U(1 ) B - L extensions of loop-induced neutrino mass models with dark matter

    NASA Astrophysics Data System (ADS)

    Ho, Shu-Yu; Toma, Takashi; Tsumura, Koji

    2016-08-01

    We study the gauged U(1 ) B - L extensions of the models for neutrino masses and dark matter. In this class of models, tiny neutrino masses are radiatively induced through the loop diagrams, while the origin of the dark matter stability is guaranteed by the remnant of the gauge symmetry. Depending on how the lepton number conservation is violated, these models are systematically classified. We present complete lists for the one-loop Z2 and the two-loop Z3 radiative seesaw models as examples of the classification. The anomaly cancellation conditions in these models are also discussed.

  16. The rational parts of one-loop QCD amplitudes III: The six-gluon case

    NASA Astrophysics Data System (ADS)

    Xiao, Zhi-Guang; Yang, Gang; Zhu, Chuan-Jie

    2006-12-01

    The rational parts of 6-gluon one-loop amplitudes with scalars circulating in the loop are computed by using the newly developed method for computing the rational parts directly from Feynman integrals. We present the analytic results for the two MHV helicity configurations: (123456) and (123456), and the two NMHV helicity configurations: (123456) and (123456). Combined with the previously computed results for the cut-constructible part, our results are the last missing pieces for the complete partial helicity amplitudes of the 6-gluon one-loop QCD amplitude.

  17. Effect of helix stability on the formation of loop-loop complexes.

    PubMed

    Sehdev, Preeti; Crews, Gordon; Soto, Ana Maria

    2012-12-01

    Kissing loop complexes are loop-loop complexes where two RNA hairpins interact through their complementary loops. In this work, we have investigated the role of the helical stems on the ability of hairpins derived from the ColE1 plasmid to associate as kissing loop complexes in the presence and absence of divalent cations. Our results show that although kissing loop complexes form more readily in the presence of Mg(2+), they are able to form in the presence of 850 mM NaCl, as long as their stems contain at least six base-pairs. Formation of the Na(+) loop-loop complexes is facilitated by changing the sequence at the stem-loop interface to include less stable AU base pairs. We suggest that the conformation at the stem-loop interface is critical in the formation of kissing loop complexes and that in the absence of Mg(2+) the conformation at the stem-loop interface is packed more loosely than with Mg(2+), to allow for a lower charge density. Consistent with this hypothesis, shortening the stems to five base pairs results in unfolding of the hairpins and formation of an extended duplex rather than a kissing loop complex because the short stems are not stable enough to tolerate the necessary conformation at the stem-loop interface to allow the formation of a kissing loop complex. PMID:23094588

  18. Bootstrapping Multi-Parton Loop Amplitudes in QCD

    SciTech Connect

    Bern, Zvi; Dixon, Lance J.; Kosower, David A.; /Saclay, SPhT

    2005-07-06

    The authors present a new method for computing complete one-loop amplitudes, including their rational parts, in non-supersymmetric gauge theory. This method merges the unitarity method with on-shell recursion relations. It systematizes a unitarity-factorization bootstrap approach previously applied by the authors to the one-loop amplitudes required for next-to-leading order QCD corrections to the processes e{sup +}e{sup -} {yields} Z, {gamma}* {yields} 4 jets and pp {yields} W + 2 jets. We illustrate the method by reproducing the one-loop color-ordered five-gluon helicity amplitudes in QCD that interfere with the tree amplitude, namely A{sub 5;1}(1{sup -}, 2{sup -}, 3{sup +}, 4{sup +}, 5{sup +}) and A{sub 5;1}(1{sup -}, 2{sup +}, 3{sup -}, 4{sup +}, 5{sup +}). Then we describe the construction of the six- and seven-gluon amplitudes with two adjacent negative-helicity gluons, A{sub 6;1}(1{sup -}, 2{sup -}, 3{sup +}, 4{sup +}, 5{sup +}, 6{sup +}) and A{sub 7;1}(1{sup -}, 2{sup -}, 3{sup +}, 4{sup +}, 5{sup +}, 6{sup +}, 7{sup +}), which uses the previously-computed logarithmic parts of the amplitudes as input. They present a compact expression for the six-gluon amplitude. No loop integrals are required to obtain the rational parts.

  19. Master integrals for the four-loop Sudakov form factor

    NASA Astrophysics Data System (ADS)

    Boels, Rutger H.; Kniehl, Bernd A.; Yang, Gang

    2016-01-01

    The light-like cusp anomalous dimension is a universal function in the analysis of infrared divergences. In maximally (N = 4) supersymmetric Yang-Mills theory (SYM) in the planar limit, it is known, in principle, to all loop orders. The non-planar corrections are not known in any theory, with the first appearing at the four-loop order. The simplest quantity which contains this correction is the four-loop two-point form factor of the stress tensor multiplet. This form factor was largely obtained in integrand form in a previous work for N = 4 SYM, up to a free parameter. In this work, a reduction of the appearing integrals obtained by solving integration-by-parts (IBP) identities using a modified version of Reduze is reported. The form factor is shown to be independent of the remaining parameter at integrand level due to an intricate pattern of cancellations after IBP reduction. Moreover, two of the integral topologies vanish after reduction. The appearing master integrals are cross-checked using independent algebraic-geometry techniques explored in the Mint package. The latter results provide the basis of master integrals applicable to generic form factors, including those in Quantum Chromodynamics. Discrepancies between explicitly solving the IBP relations and the MINT approach are highlighted. Remaining bottlenecks to completing the computation of the four-loop non-planar cusp anomalous dimension in N = 4 SYM and beyond are identified.

  20. Development of variable-width ribbon heating elements for liquid-metal and gas-cooled fast breeder reactor fuel-pin simulators

    SciTech Connect

    McCulloch, R.W.; Post, D.W.; Lovell, R.T.; Snyder, S.D.

    1981-04-01

    Variable-width ribbon heating elements that provide a chopped-cosine variable heat flux profile have been fabricated for fuel pin simulators used in test loops by the Breeder Reactor Program Thermal-Hydraulic Out-of-Reactor Safety test facility and the Gas-Cooled Fast Breeder Reactor-Core Flow Test Loop. Thermal, mechanical, and electrical design considerations are used to derive an analytical expression that precisely describes ribbon contour in terms of the major fabrication parameters. These parameters are used to generate numerical control tapes that control ribbon cutting and winding machines. Infrared scanning techniques are developed to determine the optimum transient thermal profile of the coils and relate this profile to that generated by the coils in completed fuel pin simulators.

  1. Descending thin limb of the intermediate loop expresses both aquaporin 1 and urea transporter A2 in the mouse kidney.

    PubMed

    Kim, Wan-Young; Lee, Hyun-Wook; Han, Ki-Hwan; Nam, Sun-Ah; Choi, Arum; Kim, Yong-Kyun; Kim, Jin

    2016-07-01

    A new intermediate type of Henle's loop has been reported that it extends into the inner medulla and turns within the first millimeter beyond the outer medulla. This study aimed to identify the descending thin limb (DTL) of the intermediate loop in the adult C57Bl/6 mouse kidney using aquaporin 1 (AQP1) and urea transporter A2 (UT-A2) antibodies. In the upper part of the inner stripe of the outer medulla (ISOM), AQP1 was expressed strongly in the DTL with type II epithelium of the long loop, but not in type I epithelium of the short loop. The DTL of the intermediate loop exhibited weak AQP1 immunoreactivity. UT-A2 immunoreactivity was not observed in the upper part of any DTL type. AQP1 expression was similar in the upper and middle parts of the ISOM. UT-A2 expression was variable, being expressed strongly in the DTL with type I epithelium of the short loop, but not in type II epithelium of the long loop. In the innermost part of the ISOM, AQP1 was expressed only in type III epithelium of the long loop. UT-A2-positive and UT-A2-negative cells were intermingled in type I epithelium of the intermediate loop, but were not observed in type III epithelium of the long loop. UT-A2-positive DTLs of the intermediate loop extended into the UT-A2/AQP1-negative type I epithelium in the initial part of the inner medulla. These results demonstrate that the DTL of the intermediate loop is composed of type I epithelium and expresses both AQP1 and UT-A2. The functional role of the DTL of the intermediate loop may be distinct from the short or long loops.

  2. Congenital complete atrioventricular block.

    PubMed Central

    Kertesz, N J; Fenrich, A L; Friedman, R A

    1997-01-01

    Congenital complete atrioventricular block is found in 1 of 22,000 live births. Over time, it has become apparent that these patients represent not a single distinct disease process, but several processes with the common manifestation of atrioventricular block. The evaluation of these patients to determine their risk of sudden death and need for pacing is not well defined. Images PMID:9456483

  3. Making College Completion Personal

    ERIC Educational Resources Information Center

    Thomas, Heather

    2011-01-01

    There are countless justifications for why young adults, faced with so many distractions, do not complete their educations. Many students fail to finish college because of a lack of information and understanding about healthy relationships and sex education. The author's own struggles and eventual successes as a student and mother compelled her to…

  4. Completing a Simple Circuit.

    ERIC Educational Resources Information Center

    Slater, Timothy F.; Adams, Jeffrey P.; Brown, Thomas R.

    2000-01-01

    Students have problems successfully arranging an electric circuit to make the bulb produce light. Investigates the percentage of students able to complete a circuit with a given apparatus, and the effects of prior experience on student success. Recommends hands-on activities at the elementary and secondary school levels. (Contains 14 references.)…

  5. Beyond FASFA Completion

    ERIC Educational Resources Information Center

    Castleman, Ben; Page, Lindsay

    2015-01-01

    The Free Application for Federal Student Aid (FAFSA)--which students must complete to qualify for most federal, state, and institutional financial aid--is a gateway to college through which many students must pass, particularly those from low- to moderate-income households (King, 2004; Kofoed, 2013). Yet given the complexity of the…

  6. An Insight to the Modeling of 1 × 1 Rib Loop Formation Process on Circular Weft Knitting Machine using Computer

    NASA Astrophysics Data System (ADS)

    Ray, Sadhan Chandra

    2015-10-01

    The mechanics of single jersey loop formation is well-reported is literature. However, as the concept of any model of double jersey loop formation process is not available in accessible international literature. Therefore, it was planned to develop a model of 1 × 1 rib loop formation process on dial and cylinder machine using computer so that the influence of various input variables on the final loop length as well on the profile of tension on the yarn inside Knitting Zone (KZ) can be understood. The model provides an insight into the mechanics of 1 × 1 rib loop formation system on dial and cylinder machine. Besides, the degree of agreement between predicted and measured values of loop length and cam forces as well as theoretical analysis of the model have justified the acceptability of the model.

  7. Transcranial brain stimulation: closing the loop between brain and stimulation

    PubMed Central

    Karabanov, Anke; Thielscher, Axel; Siebner, Hartwig Roman

    2016-01-01

    Purpose of review To discuss recent strategies for boosting the efficacy of noninvasive transcranial brain stimulation to improve human brain function. Recent findings Recent research exposed substantial intra- and inter-individual variability in response to plasticity-inducing transcranial brain stimulation. Trait-related and state-related determinants contribute to this variability, challenging the standard approach to apply stimulation in a rigid, one-size-fits-all fashion. Several strategies have been identified to reduce variability and maximize the plasticity-inducing effects of noninvasive transcranial brain stimulation. Priming interventions or paired associative stimulation can be used to ‘standardize’ the brain-state and hereby, homogenize the group response to stimulation. Neuroanatomical and neurochemical profiling based on magnetic resonance imaging and spectroscopy can capture trait-related and state-related variability. Fluctuations in brain-states can be traced online with functional brain imaging and inform the timing or other settings of transcranial brain stimulation. State-informed open-loop stimulation is aligned to the expression of a predefined brain state, according to prespecified rules. In contrast, adaptive closed-loop stimulation dynamically adjusts stimulation settings based on the occurrence of stimulation-induced state changes. Summary Approaches that take into account trait-related and state-related determinants of stimulation-induced plasticity bear considerable potential to establish noninvasive transcranial brain stimulation as interventional therapeutic tool. PMID:27224087

  8. Influences of Frailty Syndrome on Open-loop and Closed-loop Postural Control Strategy

    PubMed Central

    Toosizadeh, Nima; Mohler, Jane; Wendel, Chris; Najafi, Bijan

    2014-01-01

    Background As the population of older adults quickly increases, the incidence of frailty syndrome, a reduction in physiological reserve across multiple physiological systems, likewise increases. To date, impaired balance has been associated with frailty; however, the underlying frailty-related postural balance mechanisms remain unclear. Objective The aim of the current study was to use open-loop (postural muscles) and closed-loop (postural muscles plus sensory feedback) (OLCL) mechanisms to explore differences in postural balance mechanisms between non-frail (n = 44), pre-frail (n = 59), and frail individuals (n = 19). Methods One-hundred and twenty-two older adults (age ≥ 65 years) without major mobility disorders were recruited, and frailty was measured using Fried's criteria. Each participant performed two 15-second trials of Romberg balance assessment, once with eyes-open, and once with eyes-closed. Body-worn sensors were used to estimate center-of-gravity (COG) plots. Body sway (traditional stabilogram analysis) and OLCL (stabilogram diffusion analysis) parameters were derived using COG plots and compared between groups using ANOVA. Frailty and pre-frailty were estimated using a multiple variable logistic regression while controlling for age, BMI, body sway, and OLCL parameters. Results Between-group differences in parameters of interest were more pronounced during eyes-closed condition. During eyes-closed, open-loop duration was approximately 33% and 22% shorter in frail and pre-frail, when compared to non-frail controls (mean = 1.9±1.1 sec, p = 0.01). The average rate of sway during open-loop was 164% and 66% higher, respectively in frail and pre-frail when compared to non-frail subjects (0.03±0.02 cm2/sec, p < 0.001). Results also suggest that OLCL parameters can predict frail and pre-frail categories when compared to non-frail controls. Using this method, frailty was identified with a sensitivity and specificity of 97% and 85% (as compared to non

  9. Capillary pumped loop application guide

    NASA Astrophysics Data System (ADS)

    Cullimore, Brent A.

    Capillary pumped loops (CPLs) have undergone extensive development since the late 1970's, and represent a maturing technology that is beginning to appear in spacecraft designs. Perhaps because most CPL literature is intended for CPL and heat pipe dedvelopers, or perhaps because of the myriad of component design and layout options available, many thermal control designers are either unfamiliar with the capabilities offered by CPLs, or are confused about their limitations. This survey paper is targeted toward thermal control designers who must decide when and where to use CPLs, or having chosen a CPL solution, must deal with system-level integration and test issues.

  10. Cygnus Loop: A double bubble?

    NASA Astrophysics Data System (ADS)

    West, J.; Safi-Harb, S.; Reichardt, I.; Stil, J.; Kothes, R.; Jaffe, T.; Galfacts Team

    2016-06-01

    The Cygnus Loop is a well-studied supernova remnant (SNR) that has been observed across the electromagnetic spectrum. Although widely believed to be an SNR shell with a blow-out region in the south, we consider the possibility that this object is two SNRs projected along the same line-of-sight by using multi-wavelength images and modelling. Our results show that a model of two objects including some overlap region/interaction between the two objects has the best match to the observed data.

  11. Singularities in loop quantum cosmology.

    PubMed

    Cailleteau, Thomas; Cardoso, Antonio; Vandersloot, Kevin; Wands, David

    2008-12-19

    We show that simple scalar field models can give rise to curvature singularities in the effective Friedmann dynamics of loop quantum cosmology (LQC). We find singular solutions for spatially flat Friedmann-Robertson-Walker cosmologies with a canonical scalar field and a negative exponential potential, or with a phantom scalar field and a positive potential. While LQC avoids big bang or big rip type singularities, we find sudden singularities where the Hubble rate is bounded, but the Ricci curvature scalar diverges. We conclude that the effective equations of LQC are not in themselves sufficient to avoid the occurrence of curvature singularities.

  12. Closed-Loop Neuroscience and Non-Invasive Brain Stimulation: A Tale of Two Loops.

    PubMed

    Zrenner, Christoph; Belardinelli, Paolo; Müller-Dahlhaus, Florian; Ziemann, Ulf

    2016-01-01

    Closed-loop neuroscience is receiving increasing attention with recent technological advances that enable complex feedback loops to be implemented with millisecond resolution on commodity hardware. We summarize emerging conceptual and methodological frameworks that are available to experimenters investigating a "brain in the loop" using non-invasive brain stimulation and briefly review the experimental and therapeutic implications. We take the view that closed-loop neuroscience in fact deals with two conceptually quite different loops: a "brain-state dynamics" loop, used to couple with and modulate the trajectory of neuronal activity patterns, and a "task dynamics" loop, that is the bidirectional motor-sensory interaction between brain and (simulated) environment, and which enables goal-directed behavioral tasks to be incorporated. Both loops need to be considered and combined to realize the full experimental and therapeutic potential of closed-loop neuroscience. PMID:27092055

  13. Fabricating niobium test loops for the SP-100 space reactor

    NASA Technical Reports Server (NTRS)

    Bryhan, Anthony J.; Chan, Ricky C.

    1993-01-01

    This article describes the successful fabrication, operation, and evaluation of a series of niobium-alloy (Nb-1 Zr and PWC-11) thermal convection loops designed to contain and circulate molten lithium at 1,350 K. These loops were used to establish the fabrication variables of significance for a nuclear power supply for space. Approximately 200 weldments were evaluated for their tendency to be attacked by lithium as a function of varying atmospheric contamination. No attack occurred for any weldment free of contamination, with or without heat treatment, and no welds accidentally deviated from purity. The threshold oxygen content for weldment attack was determined to be 170-200 ppm. Attack varied directly with weldment oxygen and nitrogen contents.

  14. Cardiovascular simulator improvement: pressure versus volume loop assessment.

    PubMed

    Fonseca, Jeison; Andrade, Aron; Nicolosi, Denys E C; Biscegli, José F; Leme, Juliana; Legendre, Daniel; Bock, Eduardo; Lucchi, Julio Cesar

    2011-05-01

    This article presents improvement on a physical cardiovascular simulator (PCS) system. Intraventricular pressure versus intraventricular volume (PxV) loop was obtained to evaluate performance of a pulsatile chamber mimicking the human left ventricle. PxV loop shows heart contractility and is normally used to evaluate heart performance. In many heart diseases, the stroke volume decreases because of low heart contractility. This pathological situation must be simulated by the PCS in order to evaluate the assistance provided by a ventricular assist device (VAD). The PCS system is automatically controlled by a computer and is an auxiliary tool for VAD control strategies development. This PCS system is according to a Windkessel model where lumped parameters are used for cardiovascular system analysis. Peripheral resistance, arteries compliance, and fluid inertance are simulated. The simulator has an actuator with a roller screw and brushless direct current motor, and the stroke volume is regulated by the actuator displacement. Internal pressure and volume measurements are monitored to obtain the PxV loop. Left chamber internal pressure is directly obtained by pressure transducer; however, internal volume has been obtained indirectly by using a linear variable differential transformer, which senses the diaphragm displacement. Correlations between the internal volume and diaphragm position are made. LabVIEW integrates these signals and shows the pressure versus internal volume loop. The results that have been obtained from the PCS system show PxV loops at different ventricle elastances, making possible the simulation of pathological situations. A preliminary test with a pulsatile VAD attached to PCS system was made.

  15. ONELOOP: For the evaluation of one-loop scalar functions

    NASA Astrophysics Data System (ADS)

    van Hameren, A.

    2011-11-01

    ONELOOP is a program to evaluate the one-loop scalar 1-point, 2-point, 3-point and 4-point functions, for all kinematical configurations relevant for collider-physics, and for any non-positive imaginary parts of the internal squared masses. It deals with all UV and IR divergences within dimensional regularization. Furthermore, it provides routines to evaluate these functions using straightforward numerical integration. Program summaryProgram title: OneLOop Catalogue identifier: AEJO_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEJO_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 12 061 No. of bytes in distributed program, including test data, etc.: 74 163 Distribution format: tar.gz Programming language: Fortran Computer: Workstations Operating system: Linux, Unix RAM: Negligible Classification: 4.4, 11.1 Nature of problem: In order to reach next-to-leading order precision in the calculation of cross sections of hard scattering processes, one-loop amplitudes have to be evaluated. This is done by expressing them as linear combination of one-loop scalar functions. In a concrete calculation, these functions eventually have to be evaluated. If the scattering process involves unstable particles, consistency requires the evaluation of these functions with complex internal masses. Solution method: Expressions for the one-loop scalar functions in terms of single-variable analytic functions existing in literature have been implemented. Restrictions: The applicability is restricted to the kinematics occurring in collider-physics. Running time: The evaluation of the most general 4-point function with 4 complex masses takes about 180 μs, and the evaluation of the 4-point function with 4 real masses takes about 18 μs on a 2.80 GHz Intel Xeon processor.

  16. All one-loop NMHV gluon amplitudes in = 1 SYM

    NASA Astrophysics Data System (ADS)

    Ochirov, Alexander

    2013-12-01

    We compute the next-to-maximally-helicity-violating one-loop n-gluon amplitudes in = 1 super-Yang-Mills theory. These amplitudes contain three negative-helicity gluons and an arbitrary number of positive-helicity gluons, and constitute the first infinite series of amplitudes beyond the simplest, MHV, amplitudes. We assemble ingredients from the = 4 NMHV tree super-amplitude into previously unwritten double cuts and use the spinor integration technique to calculate all bubble coefficients. We also derive the missing box coefficients from quadruple cuts. Together with the known formula for three-mass triangles, this completes the set of NMHV one-loop master integral coefficients in = 1 SYM. To facilitate further use of our results, we provide their Mathematica implementation.

  17. The Intracellular Loop of the Glycine Receptor: It's not all about the Size.

    PubMed

    Langlhofer, Georg; Villmann, Carmen

    2016-01-01

    The family of Cys-loop receptors (CLRs) shares a high degree of homology and sequence identity. The overall structural elements are highly conserved with a large extracellular domain (ECD) harboring an α-helix and 10 β-sheets. Following the ECD, four transmembrane domains (TMD) are connected by intracellular and extracellular loop structures. Except the TM3-4 loop, their length comprises 7-14 residues. The TM3-4 loop forms the largest part of the intracellular domain (ICD) and exhibits the most variable region between all CLRs. The ICD is defined by the TM3-4 loop together with the TM1-2 loop preceding the ion channel pore. During the last decade, crystallization approaches were successful for some members of the CLR family. To allow crystallization, the intracellular loop was in most structures replaced by a short linker present in prokaryotic CLRs. Therefore, no structural information about the large TM3-4 loop of CLRs including the glycine receptors (GlyRs) is available except for some basic stretches close to TM3 and TM4. The intracellular loop has been intensively studied with regard to functional aspects including desensitization, modulation of channel physiology by pharmacological substances, posttranslational modifications, and motifs important for trafficking. Furthermore, the ICD interacts with scaffold proteins enabling inhibitory synapse formation. This review focuses on attempts to define structural and functional elements within the ICD of GlyRs discussed with the background of protein-protein interactions and functional channel formation in the absence of the TM3-4 loop. PMID:27330534

  18. The Intracellular Loop of the Glycine Receptor: It’s not all about the Size

    PubMed Central

    Langlhofer, Georg; Villmann, Carmen

    2016-01-01

    The family of Cys-loop receptors (CLRs) shares a high degree of homology and sequence identity. The overall structural elements are highly conserved with a large extracellular domain (ECD) harboring an α-helix and 10 β-sheets. Following the ECD, four transmembrane domains (TMD) are connected by intracellular and extracellular loop structures. Except the TM3–4 loop, their length comprises 7–14 residues. The TM3–4 loop forms the largest part of the intracellular domain (ICD) and exhibits the most variable region between all CLRs. The ICD is defined by the TM3–4 loop together with the TM1–2 loop preceding the ion channel pore. During the last decade, crystallization approaches were successful for some members of the CLR family. To allow crystallization, the intracellular loop was in most structures replaced by a short linker present in prokaryotic CLRs. Therefore, no structural information about the large TM3–4 loop of CLRs including the glycine receptors (GlyRs) is available except for some basic stretches close to TM3 and TM4. The intracellular loop has been intensively studied with regard to functional aspects including desensitization, modulation of channel physiology by pharmacological substances, posttranslational modifications, and motifs important for trafficking. Furthermore, the ICD interacts with scaffold proteins enabling inhibitory synapse formation. This review focuses on attempts to define structural and functional elements within the ICD of GlyRs discussed with the background of protein-protein interactions and functional channel formation in the absence of the TM3–4 loop. PMID:27330534

  19. Wilson loop from a Dyson equation

    SciTech Connect

    Pak, M.; Reinhardt, H.

    2009-12-15

    The Dyson equation proposed for planar temporal Wilson loops in the context of supersymmetric gauge theories is critically analyzed thereby exhibiting its ingredients and approximations involved. We reveal its limitations and identify its range of applicability in nonsupersymmetric gauge theories. In particular, we show that this equation is applicable only to strongly asymmetric planar Wilson loops (consisting of a long and a short pair of loop segments) and as a consequence the Wilsonian potential can be extracted only up to intermediate distances. By this equation the Wilson loop is exclusively determined by the gluon propagator. We solve the Dyson equation in Coulomb gauge for the temporal Wilson loop with the instantaneous part of the gluon propagator and for the spatial Wilson loop with the static gluon propagator obtained in the Hamiltonian approach to continuum Yang-Mills theory and on the lattice. In both cases we find a linearly rising color potential.

  20. Aid to determining freeway metering rates and detecting loop errors

    SciTech Connect

    Nihan, N.L.

    1997-11-01

    A recent freeway congestion prediction study for the Washington Department of Transportation (WSDOT) found that the sum of storage rates over time, SumSR(t), for a freeway section was a better variable for determining the best upstream ramp metering rates than the storage rate for time interval t, SR(t), which is the current WSDOT criterion. (Use of the SumSR(t) variable for this purpose requires that the summation be started during a period of low density flows.) Another finding was that the SumSR(t) variable was a better detector of loop chattering errors than WSDOT`s current criterion, which misses chattering errors that occur at normal traffic volume levels. Since calculation of SumSR(t) is easily incorporated in the current WSDOT ramp metering algorithm, the writer recommends its use in future WSDOT freeway metering schemes.

  1. Loop anomalies in the causal approach

    NASA Astrophysics Data System (ADS)

    Grigore, Dan-Radu

    2015-01-01

    We consider gauge models in the causal approach and study one-loop contributions to the chronological products and the anomalies they produce. We prove that in order greater than 4 there are no one-loop anomalies. Next we analyze one-loop anomalies in the second- and third-order of the perturbation theory. We prove that the even parity contributions (with respect to parity) do not produce anomalies; for the odd parity contributions we reobtain the well-known result.

  2. Magnetic monopole in the loop representation

    SciTech Connect

    Leal, Lorenzo; Lopez, Alexander

    2006-01-15

    We quantize, within the Loop Representation formalism, the electromagnetic field in the presence of a static magnetic pole. It is found that the loop-dependent physical wave functionals of the quantum Maxwell theory become multivalued, through a topological phase factor depending on the solid angle subtended at the monopole by a surface bounded by the loop. It is discussed how this fact generalizes what occurs in ordinary quantum mechanics in multiply connected spaces.

  3. Costas loop analysis for coherent optical receivers

    NASA Astrophysics Data System (ADS)

    Hodgkinson, T. G.

    1986-03-01

    A homodyne Costas loop receiver is analyzed taking both shot and laser phase noise sources into acount. The reciever performance is compared with that of a heterodyne receiver using an electrical Costas loop and that of a coherent receiver using a pilot carrier phase-locked loop. It is shown that, to avoid large performance penalties, beat linewidth to bit-rate ratios smaller than 0.05 percent and 0.5 percent are needed for PSK homodyne and heterodyne systems, respectively.

  4. LMFBR with booster pump in pumping loop

    DOEpatents

    Rubinstein, H.J.

    1975-10-14

    A loop coolant circulation system is described for a liquid metal fast breeder reactor (LMFBR) utilizing a low head, high specific speed booster pump in the hot leg of the coolant loop with the main pump located in the cold leg of the loop, thereby providing the advantages of operating the main pump in the hot leg with the reliability of cold leg pump operation.

  5. Wilson loops in open string theory

    SciTech Connect

    Shiraishi, K.

    1988-02-01

    Wilson loop elements on torus are introduced into the partition function of open strings as Polyakov's path integral at one-loop level. Mass spectra from compactification and expected symmetry breaking are illustrated by choosing the correct weight for the contributions from annulus and Mobius strip. The authors show that Jacobi's imaginary transformation connects the mass spectra with the Wilson loops. The application to thermo-partition function and cosmological implications are briefly discussed.

  6. Unified framework for systematic loop transformations

    SciTech Connect

    Lu, L.C.; Chen, M.

    1990-10-01

    This paper presents a formal mathematical framework which unifies the existing loop transformations. This framework also includes more general classes of loop transformations, which can extract more parallelism from a class of programs than the existing techniques. We classify schedules into three classes: uniform, subdomain-variant, and statement-variant. Viewing from the degree of parallelism to be gained by loop transformation, the schedules can also be classified as single-sequential level, multiple-sequential level, and mixed schedules. We also illustrate the usefulness of the more general loop transformation with an example program.

  7. Conservation law for linked cosmic string loops

    NASA Astrophysics Data System (ADS)

    Bekenstein, Jacob D.

    1992-05-01

    Taking a cue from the connection between fluid helicity and the linkage between closed vortices in ordinary turbulent flow, we examine topological restrictions on the linkage of cosmic string loops (or superfluid quantum vortex rings). The analog of helicity in these cases vanishes, but loops (and vortex rings) can link together, the extent of linkage (knotting included) being related to the contorsion of the loops or rings by a topological conservation law. This law is respected by intercommunication. One consequence is that total loop contorsion is quantized in integers.

  8. Multi-instrument observations of coronal loops

    NASA Astrophysics Data System (ADS)

    Scott, Jason Terrence

    This document exhibits results of analysis from data collected with multiple EUV satellites (SOHO, TRACE, STEREO, Hinode, and SDO). The focus is the detailed observation of coronal loops using multiple instruments, i.e. filter imagers and spectrometers. Techniques for comparing the different instruments and deriving loop parameters are demonstrated. Attention is given to the effects the different instruments may introduce into the data and their interpretation. The assembled loop parameters are compared to basic energy balance equations and scaling laws. Discussion of the blue-shifted, asymmetric, and line broadened spectral line profiles near the footpoints of coronal loops is made. The first quantitative analysis of the anti-correlation between intensity and spectral line broadening for isolated regions along loops and their footpoints is presented. A magnetic model of an active region shows where the separatrices meet the photospheric boundary. At the boundary, the spectral data reveal concentrated regions of increased blue-shifted outflows, blue wing asymmetry, and line broadening. This is found just outside the footpoints of bright loops. The intensity and line broadening in this region are anti-correlated. A comparison of the similarities in the spectroscopic structure near the footpoints of the arcade loops and more isolated loops suggests the notion of consistent structuring for the bright loops forming an apparent edge of an active region core.

  9. Double dither loop for pseudonoise code tracking

    NASA Technical Reports Server (NTRS)

    Hopkins, P. M.

    1977-01-01

    A new type of phase detector for pseudonoise code tracking is introduced and analyzed in comparison with the delay lock loop (DLL) and tau-dither loop (TDL) configurations. It is shown that the double dither loop (DDL) combines the best features of the DLL and the TDL in that the DDL is insensitive to gain and offset imbalances and does not suffer the 3-dB degradation in noise performance typically associated with the TDL. The double dither concept is applicable to other dual channel detectors such as in a Costas-type carrier tracking loop.

  10. Analysis Of Lock Detection In Costas Loops

    NASA Technical Reports Server (NTRS)

    Mileant, Alexander; Hinedi, Sami M.

    1991-01-01

    Report presents analysis of detection of phase lock in Costas loops, used in coherent binary-phase-shift-keying communication systems to track both subcarrier and suppressed carrier signals. Detection of phase lock important part of operation and monitoring of operation of Costas or other tracking loop, provides insight into behavior of loop in real time. Focuses on effects of phase jitter and correlation between samples of phase error in all-digital Costas loop, in which lock detection implemented via algorithm. Applicable to both sinusoidal and square-law carrier signals, incorporates new mathematical models of square-law and absolute-value detectors.

  11. Screened perturbation theory to three loops

    SciTech Connect

    Andersen, Jens O.; Braaten, Eric; Strickland, Michael

    2001-05-15

    The thermal physics of a massless scalar field with a {phi}{sup 4} interaction is studied within screened perturbation theory (SPT). In this method the perturbative expansion is reorganized by adding and subtracting a mass term in the Lagrangian. We consider several different mass prescriptions that generalize the one-loop gap equation to two-loop order. We calculate the pressure and entropy to three-loop order and the screening mass to two-loop order. In contrast with the weak-coupling expansion, the SPT-improved approximations appear to converge even for rather large values of the coupling constant.

  12. Highly conserved d-loop sequences in woolly mouse opossums Marmosa (Micoureus).

    PubMed

    Rocha, Rita Gomes; Leite, Yuri Luiz Reis; Ferreira, Eduardo; Justino, Juliana; Costa, Leonora Pires

    2012-04-01

    This study reports the occurrence of highly conserved d-loop sequences in the mitochondrial genome of the woolly mouse opossum genus Marmosa subgenus Micoureus (Mammalia, Didelphimorphia, Didelphidae). Sixty-six sequences of Marmosa (Micoureus) demerarae, Marmosa (Micoureus) constantiae, and Marmosa (Micoureus) paraguayanus were amplified using universal d-loop primers and virtually no genetic differences were detected within and among species. These sequences matched the control region of the mitochondrial marsupial genome. Analyses of qualitative aspects of these sequences revealed that their structural composition is very similar to the d-loop region of other didelphid species. However, the total lack of variability has not been reported from other closely related species. The data analyzed here support the occurrence of highly conserved d-loop sequences, and we found no support for the hypothesis that these sequences are d-loop-like nuclear pseudogenes. Furthermore, the control and flanking regions obtained with different primers corroborate the lack of variability of the d-loop sequences in the mitochondrial genome of Marmosa (Micoureus).

  13. Invariant Connections in Loop Quantum Gravity

    NASA Astrophysics Data System (ADS)

    Hanusch, Maximilian

    2016-04-01

    Given a group {G}, and an abelian {C^*}-algebra {A}, the antihomomorphisms {Θ\\colon G→ {Aut}(A)} are in one-to-one with those left actions {Φ\\colon G× {Spec}(A)→ {Spec}(A)} whose translation maps {Φ_g} are continuous; whereby continuities of {Θ} and {Φ} turn out to be equivalent if {A} is unital. In particular, a left action {φ\\colon G × X→ X} can be uniquely extended to the spectrum of a {C^*}-subalgebra {A} of the bounded functions on {X} if {φ_g^*(A)subseteq A} holds for each {gin G}. In the present paper, we apply this to the framework of loop quantum gravity. We show that, on the level of the configuration spaces, quantization and reduction in general do not commute, i.e., that the symmetry-reduced quantum configuration space is (strictly) larger than the quantized configuration space of the reduced classical theory. Here, the quantum-reduced space has the advantage to be completely characterized by a simple algebraic relation, whereby the quantized reduced classical space is usually hard to compute.

  14. Closed-Loop Neuroscience and Non-Invasive Brain Stimulation: A Tale of Two Loops

    PubMed Central

    Zrenner, Christoph; Belardinelli, Paolo; Müller-Dahlhaus, Florian; Ziemann, Ulf

    2016-01-01

    Closed-loop neuroscience is receiving increasing attention with recent technological advances that enable complex feedback loops to be implemented with millisecond resolution on commodity hardware. We summarize emerging conceptual and methodological frameworks that are available to experimenters investigating a “brain in the loop” using non-invasive brain stimulation and briefly review the experimental and therapeutic implications. We take the view that closed-loop neuroscience in fact deals with two conceptually quite different loops: a “brain-state dynamics” loop, used to couple with and modulate the trajectory of neuronal activity patterns, and a “task dynamics” loop, that is the bidirectional motor-sensory interaction between brain and (simulated) environment, and which enables goal-directed behavioral tasks to be incorporated. Both loops need to be considered and combined to realize the full experimental and therapeutic potential of closed-loop neuroscience. PMID:27092055

  15. Insert tree completion system

    SciTech Connect

    Brands, K.W.; Ball, I.G.; Cegielski, E.J.; Gresham, J.S.; Saunders, D.N.

    1982-09-01

    This paper outlines the overall project for development and installation of a low-profile, caisson-installed subsea Christmas tree. After various design studies and laboratory and field tests of key components, a system for installation inside a 30-in. conductor was ordered in July 1978 from Cameron Iron Works Inc. The system is designed to have all critical-pressure-containing components below the mudline and, with the reduced profile (height) above seabed, provides for improved safety of satellite underwater wells from damage by anchors, trawl boards, and even icebergs. In addition to the innovative nature of the tree design, the completion includes improved 3 1/2-in. through flowline (TFL) pumpdown completion equipment with deep set safety valves and a dual detachable packer head for simplified workover capability. The all-hydraulic control system incorporates a new design of sequencing valve for both Christmas tree control and remote flowline connection. A semisubmersible drilling rig was used to initiate the first end flowline connection at the wellhead for subsequent tie-in to the prelaid, surface-towed, all-welded subsea pipeline bundle.

  16. UWB communication receiver feedback loop

    DOEpatents

    Spiridon, Alex; Benzel, Dave; Dowla, Farid U.; Nekoogar, Faranak; Rosenbury, Erwin T.

    2007-12-04

    A novel technique and structure that maximizes the extraction of information from reference pulses for UWB-TR receivers is introduced. The scheme efficiently processes an incoming signal to suppress different types of UWB as well as non-UWB interference prior to signal detection. Such a method and system adds a feedback loop mechanism to enhance the signal-to-noise ratio of reference pulses in a conventional TR receiver. Moreover, sampling the second order statistical function such as, for example, the autocorrelation function (ACF) of the received signal and matching it to the ACF samples of the original pulses for each transmitted bit provides a more robust UWB communications method and system in the presence of channel distortions.

  17. Closed loop steam cooled airfoil

    DOEpatents

    Widrig, Scott M.; Rudolph, Ronald J.; Wagner, Gregg P.

    2006-04-18

    An airfoil, a method of manufacturing an airfoil, and a system for cooling an airfoil is provided. The cooling system can be used with an airfoil located in the first stages of a combustion turbine within a combined cycle power generation plant and involves flowing closed loop steam through a pin array set within an airfoil. The airfoil can comprise a cavity having a cooling chamber bounded by an interior wall and an exterior wall so that steam can enter the cavity, pass through the pin array, and then return to the cavity to thereby cool the airfoil. The method of manufacturing an airfoil can include a type of lost wax investment casting process in which a pin array is cast into an airfoil to form a cooling chamber.

  18. Delay locked loop integrated circuit.

    SciTech Connect

    Brocato, Robert Wesley

    2007-10-01

    This report gives a description of the development of a Delay Locked Loop (DLL) integrated circuit (IC). The DLL was developed and tested as a stand-alone IC test chip to be integrated into a larger application specific integrated circuit (ASIC), the Quadrature Digital Waveform Synthesizer (QDWS). The purpose of the DLL is to provide a digitally programmable delay to enable synchronization between an internal system clock and external peripherals with unknown clock skew. The DLL was designed and fabricated in the IBM 8RF process, a 0.13 {micro}m CMOS process. It was designed to operate with a 300MHz clock and has been tested up to 500MHz.

  19. Intelligent two-loop time-division-multiplexing (TDM) optical frequency stabilization system for multichannel communications

    NASA Astrophysics Data System (ADS)

    Li, Aiguo; Wu, Deming; Xie, Linzhen

    1995-04-01

    A channel spacing frequency stabilization system for optical frequency-division-multiplexing communications is reported. Considering variable environmental condition and device aging effects, we have designed two loops in the system using a Fabry-perot interferometer as a frequency reference. One loop is a fine-tuning one, which is a time-division-multiplexing frequency stabilization scheme adjusting the driving currents of all the transmitter. The other loop is a rough-tuning one, which is a series of newly designed digital temperature controllers in which microprocessors and electrical oscillation circuits rather than Wheatstone bridge- circuits are used to detect the temperature error signal in order to reduce laser operating temperature dependence on the environmental conditions and there are RS-232 interfaces for communications with the first loop.

  20. Approximate inference on planar graphs using loop calculus and belief progagation

    SciTech Connect

    Chertkov, Michael; Gomez, Vicenc; Kappen, Hilbert

    2009-01-01

    We introduce novel results for approximate inference on planar graphical models using the loop calculus framework. The loop calculus (Chertkov and Chernyak, 2006b) allows to express the exact partition function Z of a graphical model as a finite sum of terms that can be evaluated once the belief propagation (BP) solution is known. In general, full summation over all correction terms is intractable. We develop an algorithm for the approach presented in Chertkov et al. (2008) which represents an efficient truncation scheme on planar graphs and a new representation of the series in terms of Pfaffians of matrices. We analyze in detail both the loop series and the Pfaffian series for models with binary variables and pairwise interactions, and show that the first term of the Pfaffian series can provide very accurate approximations. The algorithm outperforms previous truncation schemes of the loop series and is competitive with other state-of-the-art methods for approximate inference.

  1. Phenylnaphthalene Derivatives as Heat Transfer Fluids for Concentrating Solar Power: Loop Experiments and Final Report

    SciTech Connect

    McFarlane, Joanna; Bell, Jason R; Felde, David K; Joseph III, Robert Anthony; Qualls, A L; Weaver, Samuel P

    2013-02-01

    ORNL and subcontractor Cool Energy completed an investigation of higher-temperature, organic thermal fluids for solar thermal applications. Although static thermal tests showed promising results for 1-phenylnaphthalene, loop testing at temperatures to 450 C showed that the material isomerized at a slow rate. In a loop with a temperature high enough to drive the isomerization, the higher melting point byproducts tended to condense onto cooler surfaces. So, as experienced in loop operation, eventually the internal channels of cooler components such as the waste heat rejection exchanger may become coated or clogged and loop performance will decrease. Thus, pure 1-phenylnaphthalene does not appear to be a fluid that would have a sufficiently long lifetime (years to decades) to be used in a loop at the increased temperatures of interest. Hence a decision was made not to test the ORNL fluid in the loop at Cool Energy Inc. Instead, Cool Energy tested and modeled power conversion from a moderate-temperature solar loop using coupled Stirling engines. Cool Energy analyzed data collected on third and fourth generation SolarHeart Stirling engines operating on a rooftop solar field with a lower temperature (Marlotherm) heat transfer fluid. The operating efficiencies of the Stirling engines were determined at multiple, typical solar conditions, based on data from actual cycle operation. Results highlighted the advantages of inherent thermal energy storage in the power conversion system.

  2. Loop Diuretics in Acute Decompensated Heart Failure: Necessary? Evil? A Necessary Evil?

    PubMed Central

    Felker, G. Michael; O’Connor, Christopher M.; Braunwald, Eugene

    2009-01-01

    Acute decompensated heart failure (ADHF) is a common and highly morbid cardiovascular disorder. Most hospitalizations for ADHF are related to symptoms of congestion, and the vast majority of ADHF patients are treated with intravenous loop diuretics. Despite this nearly ubiquitous use, data supporting the safety and efficacy of loop diuretics in ADHF are limited, and controversy exists about the best way to use loop diuretics with regard to both dosing and means of administration (continuous infusion vs. intermittent boluses). We reviewed the data supporting the safety and efficacy of loop diuretics in patients with ADHF. A large body of observational literature suggests that loop diuretics, especially at higher doses, may be associated with increased mortality in patients with heart failure even after detailed adjustment for other measures of disease severity. Additionally, multiple small underpowered trials suggest that continuous infusion may be equivalent or superior to intermittent bolus dosing. In summary, there is a critical need to develop more robust data on the use of loop diuretics in ADHF. In that context, the NIH Heart Failure Clinical Research Network has begun the Diuretics Optimization Strategies Evaluation (DOSE) study, a multi-center, double-blind, randomized controlled trial that will enroll 300 patients with ADHF. The DOSE study will randomize patients using a 2 × 2 factorial design to low dose vs. high dose furosemide, and intermittent bolus vs. continuous infusion. Successful completion of the DOSE study will provide important data on the optimal clinical use of loop diuretics in ADHF. PMID:19750134

  3. The complete mitochondrial genome of Bufo raddei.

    PubMed

    Zhang, Wenya; Zhang, Xingjie; Guo, Rui; Tang, Yue; Zhang, Yingmei

    2016-09-01

    The complete mitochondrial genome of Bufo raddei is carried out in the present research using Illumina Hiseq 2500. The mitogenome is 17 602 bp in length and contains 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and a D-loop region. The overall base composition of the H-strand is 29.15% for A, 26.09% for C, 15.16% for G, and 29.60% for T. The G + C content is 41.25%. Phylogenetic analyses of B. raddei and other 12 amphibian were carried out using Bayesian phylogenetic methods. The sequences of B. raddei were clustered in genus Bufo.

  4. Complete trails of coauthorship network evolution

    NASA Astrophysics Data System (ADS)

    Lee, Deokjae; Goh, K.-I.; Kahng, B.; Kim, D.

    2010-08-01

    The rise and fall of a research field is the cumulative outcome of its intrinsic scientific value and social coordination among scientists. The structure of the social component is quantifiable by the social network of researchers linked via coauthorship relations, which can be tracked through digital records. Here, we use such coauthorship data in theoretical physics and study their complete evolutionary trail since inception, with a particular emphasis on the early transient stages. We find that the coauthorship networks evolve through three common major processes in time: the nucleation of small isolated components, the formation of a treelike giant component through cluster aggregation, and the entanglement of the network by large-scale loops. The giant component is constantly changing yet robust upon link degradations, forming the network’s dynamic core. The observed patterns are successfully reproducible through a network model.

  5. Complete trails of coauthorship network evolution.

    PubMed

    Lee, Deokjae; Goh, K-I; Kahng, B; Kim, D

    2010-08-01

    The rise and fall of a research field is the cumulative outcome of its intrinsic scientific value and social coordination among scientists. The structure of the social component is quantifiable by the social network of researchers linked via coauthorship relations, which can be tracked through digital records. Here, we use such coauthorship data in theoretical physics and study their complete evolutionary trail since inception, with a particular emphasis on the early transient stages. We find that the coauthorship networks evolve through three common major processes in time: the nucleation of small isolated components, the formation of a treelike giant component through cluster aggregation, and the entanglement of the network by large-scale loops. The giant component is constantly changing yet robust upon link degradations, forming the network's dynamic core. The observed patterns are successfully reproducible through a network model.

  6. Quantitation of interactions between two DNA loops demonstrates loop domain insulation in E. coli cells.

    PubMed

    Priest, David G; Kumar, Sandip; Yan, Yan; Dunlap, David D; Dodd, Ian B; Shearwin, Keith E

    2014-10-21

    Eukaryotic gene regulation involves complex patterns of long-range DNA-looping interactions between enhancers and promoters, but how these specific interactions are achieved is poorly understood. Models that posit other DNA loops--that aid or inhibit enhancer-promoter contact--are difficult to test or quantitate rigorously in eukaryotic cells. Here, we use the well-characterized DNA-looping proteins Lac repressor and phage λ CI to measure interactions between pairs of long DNA loops in E. coli cells in the three possible topological arrangements. We find that side-by-side loops do not affect each other. Nested loops assist each other's formation consistent with their distance-shortening effect. In contrast, alternating loops, where one looping element is placed within the other DNA loop, inhibit each other's formation, thus providing clear support for the loop domain model for insulation. Modeling shows that combining loop assistance and loop interference can provide strong specificity in long-range interactions.

  7. SCUBA 2 Nears Completion

    NASA Astrophysics Data System (ADS)

    Robson, I.; Holland, W.; Fairley, A.; MacIntosh, M.; Walton, A.; Parker, W.; Irwin, K.; Hilton, G.; Peter, A.; Halpern, M.; Fich, M.

    2005-12-01

    The second generation submillimetre camera for the JCMT, SCUBA-2, is now in the Assembly-Integration-Test phase in the lab at the UK ATC Edinburgh. The prototype 850 and 450 micron arrays have both been tested at Cardiff and are well within specification. The cryogenic performance of the instrument has been verified with sub 100mK performance achieved and the prototype arrays will receive first light in the instrument before Christmas 2005. The science grade arrays are currently under production from NIST, University of Edinburgh and Raytheon and the first devices will arrive in the UK in November 2005. Testing of the complete system with the Multi-Channel-Electronics from UBC will commence in January and SCUBA-2 will be delivered to the JCMT in August 2006.

  8. Beyond complete positivity

    NASA Astrophysics Data System (ADS)

    Dominy, Jason M.; Lidar, Daniel A.

    2016-04-01

    We provide a general and consistent formulation for linear subsystem quantum dynamical maps, developed from a minimal set of postulates, primary among which is a relaxation of the usual, restrictive assumption of uncorrelated initial system-bath states. We describe the space of possibilities admitted by this formulation, namely that, far from being limited to only completely positive (CP) maps, essentially any C-linear, Hermiticity-preserving, trace-preserving map can arise as a legitimate subsystem dynamical map from a joint unitary evolution of a system coupled to a bath. The price paid for this added generality is a trade-off between the set of admissible initial states and the allowed set of joint system-bath unitary evolutions. As an application, we present a simple example of a non-CP map constructed as a subsystem dynamical map that violates some fundamental inequalities in quantum information theory, such as the quantum data processing inequality.

  9. Study of the fast photoswitching of spin crossover nanoparticles outside and inside their thermal hysteresis loop

    SciTech Connect

    Galle, G.; Degert, J.; Freysz, E.; Etrillard, C.; Letard, J.-F.; Guillaume, F.

    2013-02-11

    We have studied the low spin to high spin phase transition induced by nanosecond laser pulses outside and within the thermal hysteresis loop of the [Fe(Htrz){sub 2} trz](BF{sub 4}){sub 2}-H{sub 2}O spin crossover nanoparticles. We demonstrate that, whatever the temperature of the compound, the photo-switching is achieved in less than 12.5 ns. Outside the hysteresis loop, the photo-induced high spin state remains up to 100 {mu}s and then relaxes. Within the thermal hysteresis loop, the photo-induced high spin state remains as long as the temperature of the sample is kept within the thermal loop. A Raman study indicates that the photo-switching can be completed using single laser pulse excitation.

  10. [Qualitative and quantitative detection of bacterial flora in experimental blind loop syndrome of the rat].

    PubMed

    Menge, H; Simes, G; Germer, C T; Wagner, J; Hahn, H; Riecken, E O

    1985-08-01

    In the blind loop syndrome bacterial overgrowth--accompanied by an increase in bile acid deconjugation--is thought to be responsible for the observed morphological alterations of the small intestinal mucosa with its concomitant malabsorption syndrome. Since in this chain of events the bacterial overgrowth is of primary importance, we have performed a complete qualitative and quantitative evaluation of the intraluminal flora in rats with surgically created self-filling blind loops. The results show a significant increase in bacteria of the aerobic growing genera E. coli and Streptococcus (Enterococcus), and of the anaerobic growing genus Bacteroides, in one single rat also of the genera Lactobacillus/Bifidobacterium. In order to elucidate which strains of bacteria are predominantly responsible for the morphological and functional alterations observed in the stagnant loop syndrome, germ-free rats with self-filling blind loops should be contaminated selectively with bacteria of these genera.

  11. Priming in word stem completion tasks: comparison with previous results in word fragment completion tasks

    PubMed Central

    Soler, María J.; Dasí, Carmen; Ruiz, Juan C.

    2015-01-01

    This study investigates priming in an implicit word stem completion (WSC) task by analyzing the effect of linguistic stimuli characteristics on said task. A total of 305 participants performed a WSC task in two phases (study and test). The test phase included 63 unique-solution stems and 63 multiple-solution stems. Analysis revealed that priming (mean = 0.22) was stronger in the case of multiple-solution stems, indicating that they were not a homogeneous group of stimuli. Thus, further analyses were performed only for the data of the unique-solution stems. Correlations between priming and familiarity, frequency of use, and baseline completion were significant. The less familiar words, which were less frequent, had higher priming values. At the same time, the stems with lower baseline completion generated more priming. A regression analysis showed that baseline completion was the only significant predictor of priming, suggesting that the previous processing of the stimuli had a greater impact on the stimuli with low baseline performance. At the same time, baseline completion showed significant positive correlations with familiarity and frequency of use, and a negative correlation with length. When baseline completion was the dependent variable in the regression analysis, the significant variables in the regression were familiarity and length. These results were compared with those obtained in a study using word fragment completion (WFC) by Soler et al. (2009), in which the same words and procedure were employed. Analysis showed that the variables that correlated with priming were the same as in the WSC task, and that completion baseline was the variable that showed the greatest predictive power of priming. This coincidence of results obtained with WFC and WSC tasks highlights the importance of controlling the characteristics of the stimuli used when exploring the nature of priming. PMID:26321987

  12. Complete low power controller for high voltage power systems

    SciTech Connect

    Sumner, R.; Blanar, G.

    1997-12-31

    The MHV100 is a custom CMOS integrated circuit, developed for the AMS experiment. It provides complete control for a single channel high voltage (HV) generator and integrates all the required digital communications, D to A and A to D converters, the analog feedback loop and output drivers. This chip has been designed for use in both distributed high voltage systems or for low cost single channel high voltage systems. The output voltage and current range is determined by the external components.

  13. The Cygnus Loop: An Older Supernova Remnant.

    ERIC Educational Resources Information Center

    Straka, William

    1987-01-01

    Describes the Cygnus Loop, one of brightest and most easily studied of the older "remnant nebulae" of supernova outbursts. Discusses some of the historical events surrounding the discovery and measurement of the Cygnus Loop and makes some projections on its future. (TW)

  14. Formation of Chromosomal Domains by Loop Extrusion.

    PubMed

    Fudenberg, Geoffrey; Imakaev, Maxim; Lu, Carolyn; Goloborodko, Anton; Abdennur, Nezar; Mirny, Leonid A

    2016-05-31

    Topologically associating domains (TADs) are fundamental structural and functional building blocks of human interphase chromosomes, yet the mechanisms of TAD formation remain unclear. Here, we propose that loop extrusion underlies TAD formation. In this process, cis-acting loop-extruding factors, likely cohesins, form progressively larger loops but stall at TAD boundaries due to interactions with boundary proteins, including CTCF. Using polymer simulations, we show that this model produces TADs and finer-scale features of Hi-C data. Each TAD emerges from multiple loops dynamically formed through extrusion, contrary to typical illustrations of single static loops. Loop extrusion both explains diverse experimental observations-including the preferential orientation of CTCF motifs, enrichments of architectural proteins at TAD boundaries, and boundary deletion experiments-and makes specific predictions for the depletion of CTCF versus cohesin. Finally, loop extrusion has potentially far-ranging consequences for processes such as enhancer-promoter interactions, orientation-specific chromosomal looping, and compaction of mitotic chromosomes. PMID:27210764

  15. Spring control of wire harness loops

    NASA Technical Reports Server (NTRS)

    Curcio, P. J.

    1979-01-01

    Negator spring control guides wire harness between movable and fixed structure. It prevents electrical wire harness loop from jamming or being severed as wire moves in response to changes in position of aircraft rudder. Spring-loaded coiled cable controls wire loop regardless of rudder movement.

  16. Feedback loop compensates for rectifier nonlinearity

    NASA Technical Reports Server (NTRS)

    1966-01-01

    Signal processing circuit with two negative feedback loops rectifies two sinusoidal signals which are 180 degrees out of phase and produces a single full-wave rectified output signal. Each feedback loop incorporates a feedback rectifier to compensate for the nonlinearity of the circuit.

  17. Acquisition performance of various QPSK carrier tracking loops

    NASA Astrophysics Data System (ADS)

    Hinedi, S.; Shah, B.

    1992-09-01

    The frequency and phase acquisition performance of three quadrature phase shift keying (QPSK) carrier tracking loops, the MAP estimation loop, the Costas crossover loop, and the generalized Costas loop, is described. Acquisition time and probability of acquisition as a function of both loop signal-to-noise ratio and frequency offset to loop bandwidth ratio are obtained via computer simulations for type II and III loops. It is shown that the MAP loop, which results in the smallest squaring loss for all signal-to-noise ratios, is sometimes outperformed by the other two loops in terms of acquisition time and acquisition probability.

  18. Acquisition performance of various QPSK carrier tracking loops

    NASA Technical Reports Server (NTRS)

    Hinedi, S.; Shah, B.

    1992-01-01

    The frequency and phase acquisition performance of three quadrature phase shift keying (QPSK) carrier tracking loops, the MAP estimation loop, the Costas crossover loop, and the generalized Costas loop, is described. Acquisition time and probability of acquisition as a function of both loop signal-to-noise ratio and frequency offset to loop bandwidth ratio are obtained via computer simulations for type II and III loops. It is shown that the MAP loop, which results in the smallest squaring loss for all signal-to-noise ratios, is sometimes outperformed by the other two loops in terms of acquisition time and acquisition probability.

  19. Completing the Feedback Loop: The Impact of Chlorophyll Data Assimilation on the Ocean State

    NASA Technical Reports Server (NTRS)

    Borovikov, Anna; Keppenne, Christian; Kovach, Robin

    2015-01-01

    In anticipation of the integration of a full biochemical model into the next generation GMAO coupled system, an intermediate solution has been implemented to estimate the penetration depth (1Kd_PAR) of ocean radiation based on the chlorophyll concentration. The chlorophyll is modeled as a tracer with sources-sinks coming from the assimilation of MODIS chlorophyll data. Two experiments were conducted with the coupled ocean-atmosphere model. In the first, climatological values of Kpar were used. In the second, retrieved daily chlorophyll concentrations were assimilated and Kd_PAR was derived according to Morel et al (2007). No other data was assimilated to isolate the effects of the time-evolving chlorophyll field. The daily MODIS Kd_PAR product was used to validate the skill of the penetration depth estimation and the MERRA-OCEAN re-analysis was used as a benchmark to study the sensitivity of the upper ocean heat content and vertical temperature distribution to the chlorophyll input. In the experiment with daily chlorophyll data assimilation, the penetration depth was estimated more accurately, especially in the tropics. As a result, the temperature bias of the model was reduced. A notably robust albeit small (2-5 percent) improvement was found across the equatorial Pacific ocean, which is a critical region for seasonal to inter-annual prediction.

  20. EVIDENCE OF SOLAR FLARE TRIGGERING DUE TO LOOP-LOOP INTERACTION CAUSED BY FOOTPOINT SHEAR MOTION

    SciTech Connect

    Kumar, Pankaj; Srivastava, A. K.; Uddin, Wahab; Somov, B. V.; Manoharan, P. K.; Erdelyi, R. E-mail: aks@aries.res.i

    2010-11-10

    We analyze multi-wavelength data of an M7.9/1N class solar flare which occurred on 2006 April 27 in AR NOAA 10875. GOES soft X-ray images provide the most likely signature of two interacting loops and their reconnection, which triggers the solar flare. TRACE 195 A images also reveal the loop-loop interaction and the formation of 'X' points with converging motion ({approx}30 km s{sup -1}) at the reconnection site in between this interacting loop system. This provides evidence of progressive reconnection and flare maximization at the interaction site in the active region. The absence of type III radio bursts during this time period indicates no opening of magnetic field lines during the flare energy release, which implies that the change of field line connectivity/orientation occurred only during the loop-loop interaction and reconnection process. The Ondrejov dynamic radio spectrum shows an intense decimetric (DCIM) radio burst (2.5-4.5 GHz, duration {approx}3 minutes) during the flare initiation, which reveals the signature of particle acceleration from the reconnection site during loop-loop interaction. The double-peak structures at 4.9 and 8.8 GHz provide the most likely confirmatory signature of the loop-loop interaction at the flare site in the active region. RHESSI hard X-ray images also show the loop-top and footpoint sources of the corresponding two-loop system, which act like current-carrying flux tubes with resultant opposite magnetic fields and net force of attraction, and their coalescence during the flare maximum. We also suggest that the shear motion/rotation of the footpoint of the smaller loop, which is anchored in the opposite polarity spot, may be responsible for the flare energy buildup and its eventual release due to the loop-loop interaction.

  1. Contrasting HIV phylogenetic relationships and V3 loop protein similarities

    SciTech Connect

    Korber, B. Santa Fe Inst., NM ); Myers, G. )

    1992-01-01

    At least five distinct sequence subtypes of HIV-I can be identified from the major centers of the AMS pandemic. While it is too early to tell whether these subtypes are serologically or phenotypically similar or distinct in terms of properties such as pathogenicity and transmissibility, we can begin to investigate their potential for phenotypic divergence at the protein sequence level. Phylogenetic analysis of HIV DNA sequences is being widely used to examine lineages of different viral strains as they evolve and spread throughout the globe. We have identified five distinct HIV-1 subtypes (designated A-E), or clades, based on phylogenetic clustering patterns generated from genetic information from both the gag and envelope (env) genes from a spectrum of international isolates. Our initial observations concerning both HIV-1 and HIV-2 sequences indicate that conserved patterns in protein chemistry may indeed exist across distant lineages. Such patterns in V3 loop amino acid chemistry may be indicative of stable lineages or convergence within this highly variable, though functionally and immunologically critical, region. We think that there may be parallels between the apparently stable HIV-2 V3 lineage and the previously mentioned HIV-1 V3 loops which are very similar at the protein level despite being distant by cladistic analysis, and which do not possess the distinctive positively charged residues. Highly conserved V3 loop protein sequences are also encountered in SIVAGMs and CIVs (chimpanzee viral strains), which do not appear to be pathogenic in their wild-caught natural hosts.

  2. Contrasting HIV phylogenetic relationships and V3 loop protein similarities

    SciTech Connect

    Korber, B. |; Myers, G.

    1992-12-31

    At least five distinct sequence subtypes of HIV-I can be identified from the major centers of the AMS pandemic. While it is too early to tell whether these subtypes are serologically or phenotypically similar or distinct in terms of properties such as pathogenicity and transmissibility, we can begin to investigate their potential for phenotypic divergence at the protein sequence level. Phylogenetic analysis of HIV DNA sequences is being widely used to examine lineages of different viral strains as they evolve and spread throughout the globe. We have identified five distinct HIV-1 subtypes (designated A-E), or clades, based on phylogenetic clustering patterns generated from genetic information from both the gag and envelope (env) genes from a spectrum of international isolates. Our initial observations concerning both HIV-1 and HIV-2 sequences indicate that conserved patterns in protein chemistry may indeed exist across distant lineages. Such patterns in V3 loop amino acid chemistry may be indicative of stable lineages or convergence within this highly variable, though functionally and immunologically critical, region. We think that there may be parallels between the apparently stable HIV-2 V3 lineage and the previously mentioned HIV-1 V3 loops which are very similar at the protein level despite being distant by cladistic analysis, and which do not possess the distinctive positively charged residues. Highly conserved V3 loop protein sequences are also encountered in SIVAGMs and CIVs (chimpanzee viral strains), which do not appear to be pathogenic in their wild-caught natural hosts.

  3. Damped transverse oscillations of interacting coronal loops

    NASA Astrophysics Data System (ADS)

    Soler, Roberto; Luna, Manuel

    2015-10-01

    Damped transverse oscillations of magnetic loops are routinely observed in the solar corona. This phenomenon is interpreted as standing kink magnetohydrodynamic waves, which are damped by resonant absorption owing to plasma inhomogeneity across the magnetic field. The periods and damping times of these oscillations can be used to probe the physical conditions of the coronal medium. Some observations suggest that interaction between neighboring oscillating loops in an active region may be important and can modify the properties of the oscillations. Here we theoretically investigate resonantly damped transverse oscillations of interacting nonuniform coronal loops. We provide a semi-analytic method, based on the T-matrix theory of scattering, to compute the frequencies and damping rates of collective oscillations of an arbitrary configuration of parallel cylindrical loops. The effect of resonant damping is included in the T-matrix scheme in the thin boundary approximation. Analytic and numerical results in the specific case of two interacting loops are given as an application.

  4. Detailed black hole state counting in loop quantum gravity

    NASA Astrophysics Data System (ADS)

    Agullo, Ivan; Barbero G., J. Fernando; Borja, Enrique F.; Diaz-Polo, Jacobo; Villaseñor, Eduardo J. S.

    2010-10-01

    We give a complete and detailed description of the computation of black hole entropy in loop quantum gravity by employing the most recently introduced number-theoretic and combinatorial methods. The use of these techniques allows us to perform a detailed analysis of the precise structure of the entropy spectrum for small black holes, showing some relevant features that were not discernible in previous computations. The ability to manipulate and understand the spectrum up to the level of detail that we describe in the paper is a crucial step toward obtaining the behavior of entropy in the asymptotic (large horizon area) regime.

  5. Detailed black hole state counting in loop quantum gravity

    SciTech Connect

    Agullo, Ivan; Barbero G, J. Fernando; Borja, Enrique F.; Diaz-Polo, Jacobo; Villasenor, Eduardo J. S.

    2010-10-15

    We give a complete and detailed description of the computation of black hole entropy in loop quantum gravity by employing the most recently introduced number-theoretic and combinatorial methods. The use of these techniques allows us to perform a detailed analysis of the precise structure of the entropy spectrum for small black holes, showing some relevant features that were not discernible in previous computations. The ability to manipulate and understand the spectrum up to the level of detail that we describe in the paper is a crucial step toward obtaining the behavior of entropy in the asymptotic (large horizon area) regime.

  6. Elliptic multiple zeta values and one-loop superstring amplitudes

    NASA Astrophysics Data System (ADS)

    Broedel, Johannes; Mafra, Carlos R.; Matthes, Nils; Schlotterer, Oliver

    2015-07-01

    We investigate iterated integrals on an elliptic curve, which are a natural genus-one generalization of multiple polylogarithms. These iterated integrals coincide with the multiple elliptic polylogarithms introduced by Brown and Levin when constrained to the real line. At unit argument they reduce to an elliptic analogue of multiple zeta values, whose network of relations we start to explore. A simple and natural application of this framework are one-loop scattering amplitudes in open superstring theory. In particular, elliptic multiple zeta values are a suitable language to express their low energy limit. Similar to the techniques available at tree-level, our formalism allows to completely automatize the calculation.

  7. Loop heat pipes and capillary pumped loops-an applications perspective

    NASA Astrophysics Data System (ADS)

    Butler, Dan; Ku, Jentung; Swanson, Theodore

    2002-01-01

    Capillary pumped loops (CPLs) and loop heat pipes (LHPs) are versatile two-phase heat transfer devices which have recently gained increasing acceptance in space applications. Both systems work based on the same principles and have very similar designs. Nevertheless, some differences exist in the construction of the evaporator and the hydro-accumulator, and these differences lead to very distinct operating characteristics for each loop. This paper presents comparisons of the two loops from an applications perspective, and addresses their impact on spacecraft design, integration, and test. Some technical challenges and issues for both loops are also addressed. .

  8. A communication scheme for the distrubted execution of loop nests with while loops

    SciTech Connect

    Griebl, M.; Lengauer, C.

    1995-10-01

    The mathematical model for the parallelization, or {open_quotes}space-time mapping,{close_quotes} of loop nests is the polyhedron model. The presence of while loops in the nest complicates matters for two reasons: (1) the parallelized loop nest does not correspond to a polyhedron but instead to a subset that resembles a (multi-dimensional) comb and (2) it is not clear when the entire loop nest has terminated. We describe a communication scheme which can deal with both problems and which can be added to the parallel target loop nest by a compiler.

  9. Simulated Time Lags of Hinode/XRT and SDO/AIA Lightcurves as an Indication of Loop Heating Scenario

    NASA Technical Reports Server (NTRS)

    Alexander, C. E.; Lionello, R.; Winebarger, A. R.

    2014-01-01

    The precise nature of the heating mechanism (location, duration) in coronal loops is still a matter of enormous research. We present results from a one-dimensional (1D) hydrodynamic loop simulation of a coronal loop which was run using different parameters such as loops length (50, 200 and 500 light-seconds), maximum temperature reached (3 million degrees Kelvin and 10 million degrees Kelvin), and abundances. For each scenario the model outputs were used to calculate the corresponding lightcurves as seen by X-ray telescope/Be-thin filter and various Extreme Ultra Violet Atmospheric Imaging Assembly channels. The lag time between the peak of these lightcurves was computed using cross-correlation and plotted as a function of loop length. Additional results were computed using the zero-dimensional Enthalpy-Based Thermal Evolution of Loops (EBTEL) code in order to test the compatibility of the two codes and to investigate additional loop lengths. Initial results indicate that the long (greater than 5000 seconds) lags observed in the approximately 100 light-seconds loops of active regions can only be reproduced using photospheric abundances and much longer loop lengths. This result suggests that the observed time lags cannot be completely explained by impulsive heating.

  10. An Experimental Study of the Operating Temperature in a Loop Heat Pipe with Two Evaporators and Two Condensers

    NASA Technical Reports Server (NTRS)

    Ku, Jentung; Birur, Gaj; Powers, Edward I. (Technical Monitor)

    2001-01-01

    This paper presents a comprehensive experimental study of the loop operating temperature in a loop heat pipe (LHP) which has two parallel evaporators and two parallel condensers. In a single evaporator LHP, it is well known that the loop operating temperature is a function of the heat load, the sink temperature and the ambient temperature. The objective of the present study emphasizes on the stability of the loop operating temperature and parameters that affects the loop operation. Tests results show that the loop operating temperature is a function of the total system heat load, sink temperature, ambient temperature, and beat load distribution between the two evaporators. Under most conditions, only one compensation chamber (CC) contains two-phase fluid and controls the loop operating temperature, and the other CC is completely filled with liquid. Moreover, as the test condition changes, control of the loop operating temperature often shifted from one CC to another. In spite of complex interactions between various components, the test loop has demonstrated very robust operation even during fast transients.

  11. Investigation of Capillary Limit in a Loop Heat Pipe

    NASA Technical Reports Server (NTRS)

    Ku, Jentung; Ottenstein, Laura; Rogers, Paul; Cheung, Kwok; Obenschain, Arthur F. (Technical Monitor)

    2001-01-01

    This paper presets an experimental study on the capillary limit of a loop heat pipe (LHP) at low powers. The slow thermal response of the loop at low powers made it possible to observe interactions among various components after the capillary limit was exceeded. The capillary limit at low powers was achieved by imposing additional pressure drops on the vapor line through the use of a metering valve. A differential pressure transducer was also used to measure the pressure drop across the evaporator and the compensation chamber (CC). Test results show that when the capillary limit is exceeded, vapor will penetrate the primary wick, resulting in a partial dry-out of the evaporator and a rapid increase of the CC temperature. Because the evaporator can tolerate vapor bubbles, the LHP will continue to function and may reach a new steady state at the higher temperature. Thus, the LHP will exhibit a graceful degradation in performance rather than a complete failure. Moreover, the loop can recover from a partial dry-out by reducing the heat load without a re-start.

  12. Spin-2 form factors at three loop in QCD

    NASA Astrophysics Data System (ADS)

    Ahmed, Taushif; Das, Goutam; Mathews, Prakash; Rana, Narayan; Ravindran, V.

    2015-12-01

    Spin-2 fields are often candidates in physics beyond the Standard Model namely the models with extra-dimensions where spin-2 Kaluza-Klein gravitons couple to the fields of the Standard Model. Also, in the context of Higgs searches, spin-2 fields have been studied as an alternative to the scalar Higgs boson. In this article, we present the complete three loop QCD radiative corrections to the spin-2 quark-antiquark and spin-2 gluon-gluon form factors in SU(N) gauge theory with n f light flavors. These form factors contribute to both quark-antiquark and gluon-gluon initiated processes involving spin-2 particle in the hadronic reactions at the LHC. We have studied the structure of infrared singularities in these form factors up to three loop level using Sudakov integro-differential equation and found that the anomalous dimensions originating from soft and collinear regions of the loop integrals coincide with those of the electroweak vector boson and Higgs form factors confirming the universality of the infrared singularities in QCD amplitudes.

  13. Cygnus Loop Supernova Blast Wave

    NASA Technical Reports Server (NTRS)

    1993-01-01

    This is an image of a small portion of the Cygnus Loop supernova remnant, which marks the edge of a bubble-like, expanding blast wave from a colossal stellar explosion, occurring about 15,000 years ago. The HST image shows the structure behind the shock waves, allowing astronomers for the first time to directly compare the actual structure of the shock with theoretical model calculations. Besides supernova remnants, these shock models are important in understanding a wide range of astrophysical phenomena, from winds in newly-formed stars to cataclysmic stellar outbursts. The supernova blast is slamming into tenuous clouds of insterstellar gas. This collision heats and compresses the gas, causing it to glow. The shock thus acts as a searchlight revealing the structure of the interstellar medium. The detailed HST image shows the blast wave overrunning dense clumps of gas, which despite HST's high resolution, cannot be resolved. This means that the clumps of gas must be small enough to fit inside our solar system, making them relatively small structures by interstellar standards. A bluish ribbon of light stretching left to right across the picture might be a knot of gas ejected by the supernova; this interstellar 'bullet' traveling over three million miles per hour (5 million kilometres) is just catching up with the shock front, which has slowed down by ploughing into interstellar material. The Cygnus Loop appears as a faint ring of glowing gases about three degrees across (six times the diameter of the full Moon), located in the northern constellation, Cygnus the Swan. The supernova remnant is within the plane of our Milky Way galaxy and is 2,600 light-years away. The photo is a combination of separate images taken in three colors, oxygen atoms (blue) emit light at temperatures of 30,000 to 60,000 degrees Celsius (50,000 to 100,000 degrees Farenheit). Hydrogen atoms (green) arise throughout the region of shocked gas. Sulfur atoms (red) form when the gas cools to

  14. Sequence–structure relationships in RNA loops: establishing the basis for loop homology modeling

    PubMed Central

    Schudoma, Christian; May, Patrick; Nikiforova, Viktoria; Walther, Dirk

    2010-01-01

    The specific function of RNA molecules frequently resides in their seemingly unstructured loop regions. We performed a systematic analysis of RNA loops extracted from experimentally determined three-dimensional structures of RNA molecules. A comprehensive loop-structure data set was created and organized into distinct clusters based on structural and sequence similarity. We detected clear evidence of the hallmark of homology present in the sequence–structure relationships in loops. Loops differing by <25% in sequence identity fold into very similar structures. Thus, our results support the application of homology modeling for RNA loop model building. We established a threshold that may guide the sequence divergence-based selection of template structures for RNA loop homology modeling. Of all possible sequences that are, under the assumption of isosteric relationships, theoretically compatible with actual sequences observed in RNA structures, only a small fraction is contained in the Rfam database of RNA sequences and classes implying that the actual RNA loop space may consist of a limited number of unique loop structures and conserved sequences. The loop-structure data sets are made available via an online database, RLooM. RLooM also offers functionalities for the modeling of RNA loop structures in support of RNA engineering and design efforts. PMID:19923230

  15. Quantitation of interactions between two DNA loops demonstrates loop domain insulation in E. coli cells

    PubMed Central

    Priest, David G.; Kumar, Sandip; Yan, Yan; Dunlap, David D.; Dodd, Ian B.; Shearwin, Keith E.

    2014-01-01

    Eukaryotic gene regulation involves complex patterns of long-range DNA-looping interactions between enhancers and promoters, but how these specific interactions are achieved is poorly understood. Models that posit other DNA loops—that aid or inhibit enhancer–promoter contact—are difficult to test or quantitate rigorously in eukaryotic cells. Here, we use the well-characterized DNA-looping proteins Lac repressor and phage λ CI to measure interactions between pairs of long DNA loops in E. coli cells in the three possible topological arrangements. We find that side-by-side loops do not affect each other. Nested loops assist each other’s formation consistent with their distance-shortening effect. In contrast, alternating loops, where one looping element is placed within the other DNA loop, inhibit each other’s formation, thus providing clear support for the loop domain model for insulation. Modeling shows that combining loop assistance and loop interference can provide strong specificity in long-range interactions. PMID:25288735

  16. PREFACE: Loops 11: Non-Perturbative / Background Independent Quantum Gravity

    NASA Astrophysics Data System (ADS)

    Mena Marugán, Guillermo A.; Barbero G, J. Fernando; Garay, Luis J.; Villaseñor, Eduardo J. S.; Olmedo, Javier

    2012-05-01

    Loops 11 The international conference LOOPS'11 took place in Madrid from the 23-28 May 2011. It was hosted by the Instituto de Estructura de la Materia (IEM), which belongs to the Consejo Superior de Investigaciones Cientĺficas (CSIC). Like previous editions of the LOOPS meetings, it dealt with a wealth of state-of-the-art topics on Quantum Gravity, with special emphasis on non-perturbative background-independent approaches to spacetime quantization. The main topics addressed at the conference ranged from the foundations of Quantum Gravity to its phenomenological aspects. They encompassed different approaches to Loop Quantum Gravity and Cosmology, Polymer Quantization, Quantum Field Theory, Black Holes, and discrete approaches such as Dynamical Triangulations, amongst others. In addition, this edition celebrated the 25th anniversary of the introduction of the now well-known Ashtekar variables and the Wednesday morning session was devoted to this silver jubilee. The structure of the conference was designed to reflect the current state and future prospects of research on the different topics mentioned above. Plenary lectures that provided general background and the 'big picture' took place during the mornings, and the more specialised talks were distributed in parallel sessions during the evenings. To be more specific, Monday evening was devoted to Shape Dynamics and Phenomenology Derived from Quantum Gravity in Parallel Session A, and to Covariant Loop Quantum Gravity and Spin foams in Parallel Session B. Tuesday's three Parallel Sessions dealt with Black Hole Physics and Dynamical Triangulations (Session A), the continuation of Monday's session on Covariant Loop Quantum Gravity and Spin foams (Session B) and Foundations of Quantum Gravity (Session C). Finally, Thursday and Friday evenings were devoted to Loop Quantum Cosmology (Session A) and to Hamiltonian Loop Quantum Gravity (Session B). The result of the conference was very satisfactory and enlightening. Not

  17. Effect of Thermal Conduction on Acoustic Waves in Coronal Loops

    NASA Astrophysics Data System (ADS)

    Bogdan, T. J.

    2006-05-01

    The influence of classical (Spitzer) thermal conduction on longitudinal acoustic waves in a coronal loop is determined through an idealized but exactly solvable model. The model consists of an isothermal, stratified (constant gravity) atmosphere in which a monochromatic acoustic wave, traveling in the direction of decreasing density, is imposed throughout the lower half of the atmosphere. Based on the linearized equations of motion, the complete steady state (t-->∞) solution is obtained. In addition to the imposed driving wave, the solution also contains reflected and transmitted acoustic and thermal conduction waves. The mode transformation and mixing occurs in the vicinity of the atmospheric layer where the gas pressure passes through a critical value set by the magnitude of the thermal conduction and other model parameters. For 5 minute waves in a million degree loop, this critical pressure is on the order of 8×10-4 in cgs units. Since the apex gas pressure of many coronal loops of current interest is thought to be comfortably in excess of this value, mode mixing and transformation is not likely to be a relevant factor for understanding acoustic waves in these structures. On the other hand, enhanced thermal conductivity as a result of plasma instabilities, for example, could revive the importance of this mechanism for coronal loops. If this mixing layer is present, the calculations show that the pair of thermal conduction waves invariably gains the overwhelming majority of the energy flux of the incoming acoustic wave. This energy is rapidly dissipated in the neighborhood of the mixing layer.

  18. CORONAL LOOP EXPANSION PROPERTIES EXPLAINED USING SEPARATORS

    SciTech Connect

    Plowman, Joseph E.; Kankelborg, Charles C.; Longcope, Dana W.

    2009-11-20

    One puzzling observed property of coronal loops is that they are of roughly constant thickness along their length. Various studies have found no consistent pattern of width variation along the length of loops observed by TRACE and SOHO. This is at odds with expectations of magnetic flux tube expansion properties, which suggests that loops are widest at their tops, and significantly narrower at their footpoints. Coronal loops correspond to areas of the solar corona which have been preferentially heated by some process, so this observed property might be connected to the mechanisms that heat the corona. One means of energy deposition is magnetic reconnection, which occurs along field lines called separators. These field lines begin and end on magnetic null points, and loops forming near them can therefore be relatively wide at their bases. Thus, coronal energization by magnetic reconnection may replicate the puzzling expansion properties observed in coronal loops. We present results of a Monte Carlo survey of separator field line expansion properties, comparing them to the observed properties of coronal loops.

  19. Mitotic chromosome compaction via active loop extrusion

    NASA Astrophysics Data System (ADS)

    Goloborodko, Anton; Imakaev, Maxim; Marko, John; Mirny, Leonid; MIT-Northwestern Team

    During cell division, two copies of each chromosome are segregated from each other and compacted more than hundred-fold into the canonical X-shaped structures. According to earlier microscopic observations and the recent Hi-C study, chromosomes are compacted into arrays of consecutive loops of ~100 kilobases. Mechanisms that lead to formation of such loop arrays are largely unknown. Here we propose that, during cell division, chromosomes can be compacted by enzymes that extrude loops on chromatin fibers. First, we use computer simulations and analytical modeling to show that a system of loop-extruding enzymes on a chromatin fiber self-organizes into an array of consecutive dynamic loops. Second, we model the process of loop extrusion in 3D and show that, coupled with the topo II strand-passing activity, it leads to robust compaction and segregation of sister chromatids. This mechanism of chromosomal condensation and segregation does not require additional proteins or specific DNA markup and is robust against variations in the number and properties of such loop extruding enzymes. Work at NU was supported by the NSF through Grants DMR-1206868 and MCB-1022117, and by the NIH through Grants GM105847 and CA193419. Work at MIT was supported by the NIH through Grants GM114190 R01HG003143.

  20. Application of loop analysis for evaluation of malaria control interventions

    PubMed Central

    2014-01-01

    Background Despite continuous efforts and recent rapid expansion in the financing and implementation of malaria control interventions, malaria still remains one of the most devastating global health issues. Even in countries that have been successful in reducing the incidence of malaria, malaria control is becoming more challenging because of the changing epidemiology of malaria and waning community participation in control interventions. In order to improve the effectiveness of interventions and to promote community understanding of the necessity of continued control efforts, there is an urgent need to develop new methodologies that examine the mechanisms by which community-based malaria interventions could reduce local malaria incidence. Methods This study demonstrated how the impact of community-based malaria control interventions on malaria incidence can be examined in complex systems by qualitative analysis combined with an extensive review of literature. First, sign digraphs were developed through loop analysis to analyse seven interventions: source reduction, insecticide/larvicide use, biological control, treatment with anti-malarials, insecticide-treated mosquito net/long-lasting insecticidal net, non-chemical personal protection measures, and educational intervention. Then, for each intervention, the sign digraphs and literature review were combined to analyse a variety of pathways through which the intervention can influence local malaria incidence as well as interactions between variables involved in the system. Through loop analysis it is possible to see whether increases in one variable qualitatively increases or decreases other variables or leaves them unchanged and the net effect of multiple, interacting variables. Results Qualitative analysis, specifically loop analysis, can be a useful tool to examine the impact of community-based malaria control interventions. Without relying on numerical data, the analysis was able to describe pathways through

  1. Controlling variability.

    PubMed

    Sanger, Terence D

    2010-11-01

    In human motor control, there is uncertainty in both estimation of initial sensory state and prediction of the outcome of motor commands. With practice, increasing precision can often be achieved, but such precision incurs costs in time, effort, and neural resources. Therefore, motor planning must account for variability, uncertainty, and noise, not just at the endpoint of movement but throughout the movement. The author presents a mathematical basis for understanding the time course of uncertainty during movement. He shows that it is possible to achieve accurate control of the endpoint of a movement even with highly inaccurate and variable controllers. The results provide a first step toward a theory of optimal control for variable, uncertain, and noisy systems that must nevertheless accomplish real-world tasks reliably.

  2. Frequency multiplexed flux locked loop architecture providing an array of DC SQUIDS having both shared and unshared components

    DOEpatents

    Ganther, Jr., Kenneth R.; Snapp, Lowell D.

    2002-01-01

    Architecture for frequency multiplexing multiple flux locked loops in a system comprising an array of DC SQUID sensors. The architecture involves dividing the traditional flux locked loop into multiple unshared components and a single shared component which, in operation, form a complete flux locked loop relative to each DC SQUID sensor. Each unshared flux locked loop component operates on a different flux modulation frequency. The architecture of the present invention allows a reduction from 2N to N+1 in the number of connections between the cryogenic DC SQUID sensors and their associated room temperature flux locked loops. Furthermore, the 1.times.N architecture of the present invention can be paralleled to form an M.times.N array architecture without increasing the required number of flux modulation frequencies.

  3. Open-Loop Acquisition Of Frequency In BPSK

    NASA Technical Reports Server (NTRS)

    Shah, Biren N.; Holmes, Jack K.

    1992-01-01

    Proposed open-loop analog/digital signal-processing system would be Costas-loop error detector functioning in closed-loop manner overall. Detector estimates difference between frequency of input signal and internal reference oscillator. Estimate used to close frequency-control loop. Precise symbol timing not necessary. Performance better than systems that effect open-loop acquisition using integrators instead of low-pass filters in arms of Costas loops and in which performance varies with symbol timing.

  4. Capillary-Pumped Heat-Transfer Loop

    NASA Technical Reports Server (NTRS)

    1989-01-01

    New type of capillary-pumped heat-transfer loop primes itself at startup. Removes substantial quantities of heat like that generated by people and equipment in rooms and vehicles. Creates continuous path for its working fluid; both vapor and liquid move in same direction. Key element in operation of loop is formation of slugs of liquid, condensed from vapor and moved along loop by vapor bubbles before and after it. Both evaporator and condenser contain axial arteries carrying water. Heat entering evaporator from heat source provides energy for transport of fluid and heat. Dimensions in inches.

  5. Loop-quantum-gravity vertex amplitude.

    PubMed

    Engle, Jonathan; Pereira, Roberto; Rovelli, Carlo

    2007-10-19

    Spin foam models are hoped to provide the dynamics of loop-quantum gravity. However, the most popular of these, the Barrett-Crane model, does not have the good boundary state space and there are indications that it fails to yield good low-energy n-point functions. We present an alternative dynamics that can be derived as a quantization of a Regge discretization of Euclidean general relativity, where second class constraints are imposed weakly. Its state space matches the SO(3) loop gravity one and it yields an SO(4)-covariant vertex amplitude for Euclidean loop gravity.

  6. Ischemic jejunal stenosis and blind loop syndrome after blunt abdominal trauma.

    PubMed

    Isaacs, P; Rendall, M; Hoskins, E O; Missen, G A; Sladen, G E

    1987-02-01

    One month after suffering blunt abdominal trauma a patient developed severe steatorrhea and profound weight loss in association with an ischemic distal jejunal stricture and blind loop syndrome. Evidence for a partial mesenteric tear was found at resection of the stricture, which resulted in complete cure.

  7. Operation of a phase locked loop system under distorted utility conditions

    SciTech Connect

    Kaura, V.; Blasko, V.

    1997-01-01

    Operation of a phase locked loop (PLL) system under distorted utility conditions is presented. A control model of the PLL system is developed and recommendations are made on tuning of this model specially for operation under common utility distortions as line notching, voltage unbalance/loss, frequency variations. The PLL is completely implemented in software without any filters. All analytical results are experimentally verified.

  8. Complete subsets of a diffraction pattern

    NASA Astrophysics Data System (ADS)

    Cervellino, Antonio; Ciccariello, Salvino

    2001-02-01

    A positive atomic density ρ(r) = ∑j=1Nnjδ(r-rj) in a D-dimensional space can be exactly reconstructed from an appropriate finite subset (complete set) of its Fourier series coefficients Uhh in ZD or even (limited to the support) rJj=1,....N) from a finite subset of moduli |Uh|. It is necessary first to determine a complete set of Fourier coefficients Uh (possibly inside the unavoidable high-resolution cut-off ||h|| < L) and then, by these coefficients to determine the unknown density. We report some procedures which are able to signle out complete sets. They are based on a property of Goedkoop's vector lattice |Ah h in ZD, defined so that complete set passes through the solution of a system of polynomial equations in D variables, whose roots determine the position vectors. We show how to convert this problem into the simpler problem of sequentially solving a set of polynomial equations in one variable.

  9. Formation of a DNA loop at the replication fork generated by bacteriophage T7 replication proteins.

    PubMed

    Park, K; Debyser, Z; Tabor, S; Richardson, C C; Griffith, J D

    1998-02-27

    Intermediates in the replication of circular and linear M13 double-stranded DNA by bacteriophage T7 proteins have been examined by electron microscopy. Synthesis generated double-stranded DNA molecules containing a single replication fork with a linear duplex tail. A complex presumably consisting of T7 DNA polymerase and gene 4 helicase/primase molecules was present at the fork together with a variable amount of single-stranded DNA sequestered by gene 2.5 single-stranded DNA binding protein. Analysis of the length distribution of Okazaki fragments formed at different helicase/primase concentrations was consistent with coupling of leading and lagging strand replication. Fifteen to forty percent of the templates engaged in replication have a DNA loop at the replication fork. The loops are fully double-stranded with an average length of approximately 1 kilobase. Labeling with biotinylated dCTP showed that the loops consist of newly synthesized DNA, and synchronization experiments using a linear template with a G-less cassette demonstrated that the loops are formed by active displacement of the lagging strand. A long standing feature of models for coupled leading/lagging strand replication has been the presence of a DNA loop at the replication fork. This study provides the first direct demonstration of such loops.

  10. Heating Mechanisms for Intermittent Loops in Active Region Cores from AIA/SDO EUV Observations

    NASA Astrophysics Data System (ADS)

    Cadavid, A. C.; Lawrence, J. K.; Christian, D. J.; Jess, D. B.; Nigro, G.

    2014-11-01

    We investigate intensity variations and energy deposition in five coronal loops in active region cores. These were selected for their strong variability in the AIA/SDO 94 Å intensity channel. We isolate the hot Fe XVIII and Fe XXI components of the 94 Å and 131 Å by modeling and subtracting the "warm" contributions to the emission. HMI/SDO data allow us to focus on "inter-moss" regions in the loops. The detailed evolution of the inter-moss intensity time series reveals loops that are impulsively heated in a mode compatible with a nanoflare storm, with a spike in the hot 131 Å signals leading and the other five EUV emission channels following in progressive cooling order. A sharp increase in electron temperature tends to follow closely after the hot 131 Å signal confirming the impulsive nature of the process. A cooler process of growing emission measure follows more slowly. The Fourier power spectra of the hot 131 Å signals, when averaged over the five loops, present three scaling regimes with break frequencies near 0.1 min-1 and 0.7 min-1. The low frequency regime corresponds to 1/f noise; the intermediate indicates a persistent scaling process and the high frequencies show white noise. Very similar results are found for the energy dissipation in a 2D "hybrid" shell model of loop magneto-turbulence, based on reduced magnetohydrodynamics, that is compatible with nanoflare statistics. We suggest that such turbulent dissipation is the energy source for our loops.

  11. The behavior of transverse waves in nonuniform solar flux tubes. II. Implications for coronal loop seismology

    SciTech Connect

    Soler, Roberto; Terradas, Jaume; Oliver, Ramón; Goossens, Marcel

    2014-02-01

    The seismology of coronal loops using observations of damped transverse oscillations in combination with results from theoretical models is a tool to indirectly infer physical parameters in the solar atmospheric plasma. Existing seismology schemes based on approximations of the period and damping time of kink oscillations are often used beyond their theoretical range of applicability. These approximations assume that the variation of density across the loop is confined to a nonuniform layer much thinner than the radius of the loop, but the results of the inversion problem often do not satisfy this preliminary hypothesis. Here, we determine the accuracy of the analytic approximations of the period and damping time, and the impact on seismology estimates when largely nonuniform loops are considered. We find that the accuracy of the approximations when used beyond their range of applicability is strongly affected by the form of the density profile across the loop, that is observationally unknown and so must be arbitrarily imposed as part of the theoretical model. The error associated with the analytic approximations can be larger than 50% even for relatively thin nonuniform layers. This error directly affects the accuracy of approximate seismology estimates compared to actual numerical inversions. In addition, assuming different density profiles can produce noncoincident intervals of the seismic variables in inversions of the same event. The ignorance about the true shape of density variation across the loop is an important source of error that may dispute the reliability of parameters seismically inferred assuming an ad hoc density profile.

  12. Resistance of Subtype C HIV-1 Strains to Anti-V3 Loop Antibodies

    PubMed Central

    Almond, David; Krachmarov, Chavdar; Swetnam, James; Zolla-Pazner, Susan; Cardozo, Timothy

    2012-01-01

    HIV-1's subtype C V3 loop consensus sequence exhibits increased resistance to anti-V3 antibody-mediated neutralization as compared to the subtype B consensus sequence. The dynamic 3D structure of the consensus C V3 loop crown, visualized by ab initio folding, suggested that the resistance derives from structural rigidity and non-β-strand secondary protein structure in the N-terminal strand of the β-hairpin of the V3 loop crown, which is where most known anti-V3 loop antibodies bind. The observation of either rigidity or non-β-strand structure in this region correlated with observed resistance to antibody-mediated neutralization in a series of chimeric pseudovirus (psV) mutants. The results suggest the presence of an epitope-independent, neutralization-relevant structural difference in the antibody-targeted region of the V3 loop crown between subtype C and subtype B, a difference that we hypothesize may contribute to the divergent pattern of global spread between these subtypes. As antibodies to a variable loop were recently identified as an inverse correlate of risk for HIV infection, the structure-function relationships discussed in this study may have relevance to HIV vaccine research. PMID:22548061

  13. Which variability?

    PubMed

    Toraldo, Alessio; Luzzatti, Claudio

    2006-02-01

    Drai and Grodzinsky provide a valuable analysis that offers a way of disentangling the effects of Movement and Mood in agrammatic comprehension. However, their mathematical implementation (Beta model) hides theoretically relevant information, i.e., qualitative heterogeneities of performance within the patient sample. This heterogeneity is crucial in the variability debate.

  14. BOOK REVIEW: Complete Physics

    NASA Astrophysics Data System (ADS)

    Carson, Simon

    2000-03-01

    ', begins with an emphasis on the correct use of units in calculations that is very good (although again only really appropriate for more able students) and considers scientific notation and SI units. The use of triangles for rearranging three variable equations is introduced without any discussion of how to do the algebra properly. I found this rather out of place in a book of this level; I should personally hope to see those intending to pursue the subject beyond GCSE capable of rearranging equations without recourse to methods which convey no understanding of the physical relationship. The section on the `History of Key Ideas' has a double page spread on `Forces, Motion and Energy', `Rays, Waves and Particles' and `The Earth and Beyond', followed by a chronology of physics from 400 BC to 1990. These sections are necessarily very brief. The final section, `Experimental Physics', has some useful reminders for students about investigative work and a photocopiable checklist. The book has some very attractive features. Most pages include a boxed list of `essentials' that are useful either in skimming the text to find useful information or in revision. Each double page spread into which the material is arranged includes some fairly straightforward questions to test the basic ideas. Each section ends with a set of examination questions and with a checklist of ideas that can be photocopied for students to tick off what has been covered. The contents pages of the book may also be photocopied for students to check their progress. Given that this is a brand new book, I found the inclusion of a spread on ticker-tape rather old-fashioned: video is a much better way of analysing motion. The language of the text, too, can be rather dry and academic, and the organization reflects a traditional approach to the physics curriculum. The book would be most useful, I think, to able students studying single-subject physics courses at GCSE or to those beginning A-level. At £14.00 a copy, it

  15. DNA looping increases the range of bistability in a stochastic model of the lac genetic switch.

    PubMed

    Earnest, Tyler M; Roberts, Elijah; Assaf, Michael; Dahmen, Karin; Luthey-Schulten, Zaida

    2013-04-01

    Conditions and parameters affecting the range of bistability of the lac genetic switch in Escherichia coli are examined for a model which includes DNA looping interactions with the lac repressor and a lactose analogue. This stochastic gene-mRNA-protein model of the lac switch describes DNA looping using a third transcriptional state. We exploit the fast bursting dynamics of mRNA by combining a novel geometric burst extension with the finite state projection method. This limits the number of protein/mRNA states, allowing for an accelerated search of the model's parameter space. We evaluate how the addition of the third state changes the bistability properties of the model and find a critical region of parameter space where the phenotypic switching occurs in a range seen in single molecule fluorescence studies. Stochastic simulations show induction in the looping model is preceded by a rare complete dissociation of the loop followed by an immediate burst of mRNA rather than a slower build up of mRNA as in the two-state model. The overall effect of the looped state is to allow for faster switching times while at the same time further differentiating the uninduced and induced phenotypes. Furthermore, the kinetic parameters are consistent with free energies derived from thermodynamic studies suggesting that this minimal model of DNA looping could have a broader range of application. PMID:23406725

  16. Ground Source Heat Pump Sub-Slab Heat Exchange Loop Performance in a Cold Climate

    SciTech Connect

    Mittereder, N.; Poerschke, A.

    2013-11-01

    This report presents a cold-climate project that examines an alternative approach to ground source heat pump (GSHP) ground loop design. The innovative ground loop design is an attempt to reduce the installed cost of the ground loop heat exchange portion of the system by containing the entire ground loop within the excavated location beneath the basement slab. Prior to the installation and operation of the sub-slab heat exchanger, energy modeling using TRNSYS software and concurrent design efforts were performed to determine the size and orientation of the system. One key parameter in the design is the installation of the GSHP in a low-load home, which considerably reduces the needed capacity of the ground loop heat exchanger. This report analyzes data from two cooling seasons and one heating season. Upon completion of the monitoring phase, measurements revealed that the initial TRNSYS simulated horizontal sub-slab ground loop heat exchanger fluid temperatures and heat transfer rates differed from the measured values. To determine the cause of this discrepancy, an updated model was developed utilizing a new TRNSYS subroutine for simulating sub-slab heat exchangers. Measurements of fluid temperature, soil temperature, and heat transfer were used to validate the updated model.

  17. Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis

    PubMed Central

    Hamdan, Samir M.; Loparo, Joseph J.; Takahashi, Masateru; Richardson, Charles C.; van Oijen, Antoine M.

    2009-01-01

    In all organisms, the protein machinery responsible for the replication of DNA, the replisome, is faced with a directionality problem. The antiparallel nature of duplex DNA permits the leading-strand polymerase to advance in a continuous fashion, but forces the lagging-strand polymerase to synthesize in the opposite direction. By extending RNA primers, the lagging-strand polymerase restarts at short intervals and produces Okazaki fragments1,2. At least in prokaryotic systems, this directionality problem is solved by the formation of a loop in the lagging strand of the replication fork to reorient the lagging-strand DNA polymerase so that it advances in parallel with the leading-strand polymerase. The replication loop grows and shrinks during each cycle of Okazaki-fragment synthesis3. Here, we employ single-molecule techniques to visualize, in real time, the formation and release of replication loops by individual replisomes of bacteriophage T7 supporting coordinated DNA replication. Analysis of the distributions of loop sizes and lag times between loops reveals that initiation of primer synthesis and the completion of an Okazaki fragment each serve as a trigger for loop release. The presence of two triggers may represent a fail-safe mechanism ensuring the timely reset of the replisome after the synthesis of every Okazaki fragment. PMID:19029884

  18. DNA looping increases the range of bistability in a stochastic model of the lac genetic switch

    NASA Astrophysics Data System (ADS)

    Earnest, Tyler M.; Roberts, Elijah; Assaf, Michael; Dahmen, Karin; Luthey-Schulten, Zaida

    2013-04-01

    Conditions and parameters affecting the range of bistability of the lac genetic switch in Escherichia coli are examined for a model which includes DNA looping interactions with the lac repressor and a lactose analogue. This stochastic gene-mRNA-protein model of the lac switch describes DNA looping using a third transcriptional state. We exploit the fast bursting dynamics of mRNA by combining a novel geometric burst extension with the finite state projection method. This limits the number of protein/mRNA states, allowing for an accelerated search of the model's parameter space. We evaluate how the addition of the third state changes the bistability properties of the model and find a critical region of parameter space where the phenotypic switching occurs in a range seen in single molecule fluorescence studies. Stochastic simulations show induction in the looping model is preceded by a rare complete dissociation of the loop followed by an immediate burst of mRNA rather than a slower build up of mRNA as in the two-state model. The overall effect of the looped state is to allow for faster switching times while at the same time further differentiating the uninduced and induced phenotypes. Furthermore, the kinetic parameters are consistent with free energies derived from thermodynamic studies suggesting that this minimal model of DNA looping could have a broader range of application.

  19. Analytic three-loop static potential

    NASA Astrophysics Data System (ADS)

    Lee, Roman N.; Smirnov, Alexander V.; Smirnov, Vladimir A.; Steinhauser, Matthias

    2016-09-01

    We present analytic results for the three-loop static potential of two heavy quarks. The analytic calculation of the missing ingredients is outlined, and results for the singlet and octet potential are provided.

  20. A magnetohydrodynamic theory of coronal loop transients

    NASA Technical Reports Server (NTRS)

    Yeh, T.

    1982-01-01

    The physical and geometrical characteristics of solar coronal loop transients are described in an MHD model based on Archimedes' MHD buoyancy force. The theory was developed from interpretation of coronagraphic data, particularly from Skylab. The brightness of a loop is taken to indicate the electron density, and successive pictures reveal the electron enhancement in different columns. The forces which lift the loop off the sun surface are analyzed as an MHD buoyancy force affecting every mass element by imparting an inertial force necessary for heliocentrifugal motion. Thermal forces are responsible for transferring the ambient stress to the interior of the loop to begin the process. The kinematic and hydrostatic buoyancy overcome the gravitational force, and a flux rope can then curve upward, spiralling like a corkscrew with varying cross section around the unwinding solar magnetic field lines.

  1. Mathematical Modeling of Loop Heat Pipes

    NASA Technical Reports Server (NTRS)

    Kaya, Tarik; Ku, Jentung; Hoang, Triem T.; Cheung, Mark L.

    1998-01-01

    The primary focus of this study is to model steady-state performance of a Loop Heat Pipe (LHP). The mathematical model is based on the steady-state energy balance equations at each component of the LHP. The heat exchange between each LHP component and the surrounding is taken into account. Both convection and radiation environments are modeled. The loop operating temperature is calculated as a function of the applied power at a given loop condition. Experimental validation of the model is attempted by using two different LHP designs. The mathematical model is tested at different sink temperatures and at different elevations of the loop. Tbc comparison of the calculations and experimental results showed very good agreement (within 3%). This method proved to be a useful tool in studying steady-state LHP performance characteristics.

  2. The universal one-loop effective action

    NASA Astrophysics Data System (ADS)

    Drozd, Aleksandra; Ellis, John; Quevillon, Jérémie; You, Tevong

    2016-03-01

    We present the universal one-loop effective action for all operators of dimension up to six obtained by integrating out massive, non-degenerate multiplets. Our general expression may be applied to loops of heavy fermions or bosons, and has been checked against partial results available in the literature. The broad applicability of this approach simplifies one-loop matching from an ultraviolet model to a lower-energy effective field theory (EFT), a procedure which is now reduced to the evaluation of a combination of matrices in our universal expression, without any loop integrals to evaluate. We illustrate the relationship of our results to the Standard Model (SM) EFT, using as an example the supersymmetric stop and sbottom squark Lagrangian and extracting from our universal expression the Wilson coefficients of dimension-six operators composed of SM fields.

  3. Hierarchical loop detection for mobile outdoor robots

    NASA Astrophysics Data System (ADS)

    Lang, Dagmar; Winkens, Christian; Häselich, Marcel; Paulus, Dietrich

    2012-01-01

    Loop closing is a fundamental part of 3D simultaneous localization and mapping (SLAM) that can greatly enhance the quality of long-term mapping. It is essential for the creation of globally consistent maps. Conceptually, loop closing is divided into detection and optimization. Recent approaches depend on a single sensor to recognize previously visited places in the loop detection stage. In this study, we combine data of multiple sensors such as GPS, vision, and laser range data to enhance detection results in repetitively changing environments that are not sufficiently explained by a single sensor. We present a fast and robust hierarchical loop detection algorithm for outdoor robots to achieve a reliable environment representation even if one or more sensors fail.

  4. Loop Diuretics in the Treatment of Hypertension.

    PubMed

    Malha, Line; Mann, Samuel J

    2016-04-01

    Loop diuretics are not recommended in current hypertension guidelines largely due to the lack of outcome data. Nevertheless, they have been shown to lower blood pressure and to offer potential advantages over thiazide-type diuretics. Torsemide offers advantages of longer duration of action and once daily dosing (vs. furosemide and bumetanide) and more reliable bioavailability (vs. furosemide). Studies show that the previously employed high doses of thiazide-type diuretics lower BP more than furosemide. Loop diuretics appear to have a preferable side effect profile (less hyponatremia, hypokalemia, and possibly less glucose intolerance). Studies comparing efficacy and side effect profiles of loop diuretics with the lower, currently widely prescribed, thiazide doses are needed. Research is needed to fill gaps in knowledge and common misconceptions about loop diuretic use in hypertension and to determine their rightful place in the antihypertensive arsenal.

  5. Open-loop digital frequency multiplier

    NASA Technical Reports Server (NTRS)

    Moore, R. C.

    1977-01-01

    Monostable multivibrator is implemented by using digital integrated circuits where multiplier constant is too large for conventional phase-locked-loop integrated circuit. A 400 Hz clock is generated by divide-by-N counter from 1 Hz timing reference.

  6. Concerted loop motion triggers induced fit of FepA to ferric enterobactin

    PubMed Central

    Smallwood, Chuck R.; Jordan, Lorne; Trinh, Vy; Schuerch, Daniel W.; Gala, Amparo; Hanson, Mathew; Shipelskiy, Yan; Majumdar, Aritri; Newton, Salete M.C.

    2014-01-01

    Spectroscopic analyses of fluorophore-labeled Escherichia coli FepA described dynamic actions of its surface loops during binding and transport of ferric enterobactin (FeEnt). When FeEnt bound to fluoresceinated FepA, in living cells or outer membrane fragments, quenching of fluorophore emissions reflected conformational motion of the external vestibular loops. We reacted Cys sulfhydryls in seven surface loops (L2, L3, L4, L5, L7 L8, and L11) with fluorophore maleimides. The target residues had different accessibilities, and the labeled loops themselves showed variable extents of quenching and rates of motion during ligand binding. The vestibular loops closed around FeEnt in about a second, in the order L3 > L11 > L7 > L2 > L5 > L8 > L4. This sequence suggested that the loops bind the metal complex like the fingers of two hands closing on an object, by individually adsorbing to the iron chelate. Fluorescence from L3 followed a biphasic exponential decay as FeEnt bound, but fluorescence from all the other loops followed single exponential decay processes. After binding, the restoration of fluorescence intensity (from any of the labeled loops) mirrored cellular uptake that depleted FeEnt from solution. Fluorescence microscopic images also showed FeEnt transport, and demonstrated that ferric siderophore uptake uniformly occurs throughout outer membrane, including at the poles of the cells, despite the fact that TonB, its inner membrane transport partner, was not detectable at the poles. PMID:24981231

  7. 69. COMPLETED 'A' FRAME STRUCTURE LOOKING NORTHWEST SHOWING CANTILEVERED WALKWAYS, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    69. COMPLETED 'A' FRAME STRUCTURE LOOKING NORTHWEST SHOWING CANTILEVERED WALKWAYS, 'CROWS NEST', CAMERA TOWER, COUNTERWEIGHT CAR AND ROADWAY ARCH, April 30, 1948. (Original photograph in possession of Dave Willis, San Diego, California.) - Variable Angle Launcher Complex, Variable Angle Launcher, CA State Highway 39 at Morris Reservior, Azusa, Los Angeles County, CA

  8. 71. COMPLETED 'A' FRAME STRUCTURE LOOKING SOUTH SHOWING CAMERA TOWER, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    71. COMPLETED 'A' FRAME STRUCTURE LOOKING SOUTH SHOWING CAMERA TOWER, DRIVE GEARS, COUNTERWEIGHT CAR AND CANTILEVERED WALKWAYS, July 28, 1948. (Original photograph in possession of Dave Willis, San Diego, California.) - Variable Angle Launcher Complex, Variable Angle Launcher, CA State Highway 39 at Morris Reservior, Azusa, Los Angeles County, CA

  9. A multiple-pass ring oscillator based dual-loop phase-locked loop

    NASA Astrophysics Data System (ADS)

    Danfeng, Chen; Junyan, Ren; Jingjing, Deng; Wei, Li; Ning, Li

    2009-10-01

    A dual-loop phase-locked loop (PLL) for wideband operation is proposed. The dual-loop architecture combines a coarse-tuning loop with a fine-tuning one, enabling a wide tuning range and low voltage-controlled oscillator (VCO) gain without poisoning phase noise and reference spur suppression performance. An analysis of the phase noise and reference spur of the dual-loop PLL is emphasized. A novel multiple-pass ring VCO is designed for the dual-loop application. It utilizes both voltage-control and current-control simultaneously in the delay cell. The PLL is fabricated in Jazz 0.18-μm RF CMOS technology. The measured tuning range is from 4.2 to 5.9 GHz. It achieves a low phase noise of -99 dBc/Hz @ 1 MHz offset from a 5.5 GHz carrier.

  10. Topological order from quantum loops and nets

    SciTech Connect

    Fendley, Paul

    2008-12-15

    I define models of quantum loops and nets that have ground states with topological order. These make possible excited states comprised of deconfined anyons with non-abelian braiding. With the appropriate inner product, these quantum loop models are equivalent to net models whose topological weight involves the chromatic polynomial. A simple Hamiltonian preserving the topological order is found by exploiting quantum self-duality. For the square lattice, this Hamiltonian has only four-spin interactions.

  11. Loop quantum cosmology in 2 +1 dimension

    NASA Astrophysics Data System (ADS)

    Zhang, Xiangdong

    2014-12-01

    As a first step to generalize the structure of loop quantum cosmology to the theories with the spacetime dimension other than four, the isotropic model of loop quantum cosmology in 2 +1 dimension is studied in this paper. We find that the classical big bang singularity is again replaced by a quantum bounce in the model. The similarities and differences between the (2 +1 )-dimensional model and the (3 +1 )-dimensional one are also discussed.

  12. Cyclic universe from Loop Quantum Gravity

    NASA Astrophysics Data System (ADS)

    Cianfrani, Francesco; Kowalski-Glikman, Jerzy; Rosati, Giacomo

    2016-02-01

    We discuss how a cyclic model for the flat universe can be constructively derived from Loop Quantum Gravity. This model has a lower bounce, at small values of the scale factor, which shares many similarities with that of Loop Quantum Cosmology. We find that Quantum Gravity corrections can be also relevant at energy densities much smaller than the Planckian one and that they can induce an upper bounce at large values of the scale factor.

  13. Deployable radiator with flexible line loop

    NASA Technical Reports Server (NTRS)

    Keeler, Bryan V. (Inventor); Lehtinen, Arthur Mathias (Inventor); McGee, Billy W. (Inventor)

    2003-01-01

    Radiator assembly (10) for use on a spacecraft (12) is provided including at least one radiator panel assembly (26) repeatably movable between a panel stowed position (28) and a panel deployed position (36), at least two flexible lines (40) in fluid communication with the at least one radiator panel assembly (26) and repeatably movable between a stowage loop (42) and a flattened deployed loop (44).

  14. Onset of inflation in loop quantum cosmology

    SciTech Connect

    Germani, Cristiano; Nelson, William; Sakellariadou, Mairi

    2007-08-15

    Using a Liouville measure, similar to the one proposed recently by Gibbons and Turok, we investigate the probability that single-field inflation with a polynomial potential can last long enough to solve the shortcomings of the standard hot big bang model, within the semiclassical regime of loop quantum cosmology. We conclude that, for such a class of inflationary models and for natural values of the loop quantum cosmology parameters, a successful inflationary scenario is highly improbable.

  15. Can Chemical Looping Combustion Use CFB Technology?

    SciTech Connect

    Gamwo, I.K.

    2006-11-01

    Circulating Fluidized Bed (CFB) technology has demonstrated an unparalleled ability to achieve low SO2 and NOx emissions for coal-fired power plants without CO2 capture. Chemical Looping combustion (CLC) is a novel fuel combustion technology which appears as a leading candidate in terms of competitiveness for CO2 removal from flue gas. This presentaion deals with the adaptation of circulating fluidized bed technology to Chemical looping combustion

  16. Tachyon matter in loop quantum cosmology

    NASA Astrophysics Data System (ADS)

    Sen, A. A.

    2006-08-01

    An analytical approach for studying the cosmological scenario with a homogeneous tachyon field within the framework of loop quantum gravity is developed. Our study is based on the semiclassical regime where space time can be approximated as a continuous manifold, but matter Hamiltonian gets nonperturbative quantum corrections. A formal correspondence between classical and loop quantum cosmology is also established. The Hamilton-Jacobi method for getting exact solutions is constructed and some exact power law as well as bouncing solutions are presented.

  17. Study of quasar variability

    NASA Astrophysics Data System (ADS)

    Jerke, Jonathan Lee

    The Palomar-QUEST Variability Survey has been completed. This thesis has analyzed the data set with the goal of determining the variability of a large sample of quasars. We construct light curves for each individual quasar. We interpret the light curves in terms of a structure function analysis. A slope is extracted from the scaling of the structure function to measure the power law of the quasar optical variability, taking the power spectral density to behave as a power law of the frequency of variation, f-alpha. Monte carlo simulations are used to estimate the errors on the model and the final data quality. With these estimates, individual quasars are assigned a chi2 value and nearly every event has a reduced chi 2 less than 10. The first 100 light curves and structure functions with errors are shown in the Appendix. We have shown that the final distribution of power law coefficients alpha of 1944 quasars is inconsistent with a model with a simple value of alpha. Several models with different alpha are required to explain the behavior of the sample. We find that quasars are less variable on all time scales for increasing luminosity. We also find that the quasars with black hole masses below 10 8 show a lower power law then the average. This means less massive quasars are less variable at long time scales.

  18. Multiple Flow Loop SCADA System Implemented on the Production Prototype Loop

    SciTech Connect

    Baily, Scott A.; Dalmas, Dale Allen; Wheat, Robert Mitchell; Woloshun, Keith Albert; Dale, Gregory E.

    2015-11-16

    The following report covers FY 15 activities to develop supervisory control and data acquisition (SCADA) system for the Northstar Moly99 production prototype gas flow loop. The goal of this effort is to expand the existing system to include a second flow loop with a larger production-sized blower. Besides testing the larger blower, this system will demonstrate the scalability of our solution to multiple flow loops.

  19. Survey of geothermal completion fluids

    SciTech Connect

    Childers, M.R.

    1980-01-01

    A survey of oil field fluids companies indicates that there are no geothermal completion fluids on the market. It is recommended that development of a completion fluid and appropriate support testing be funded.

  20. Plasma Loops in the Solar Corona

    NASA Astrophysics Data System (ADS)

    Bray, R. J.; Cram, L. E.; Durrant, C.; Loughhead, R. E.

    1991-07-01

    A comprehensive account of the properties of plasma loops, the fundamental structural elements of the solar corona. Plasma loops cover a wide range of sizes and range in temperature from tens of thousands to millions of degrees. They not only define the structure of individual active regions but connect different active regions--even across the solar equator. Loops also play an integral and decisive role in the enormous solar explosions called flares. Over recent years a wealth of space and ground-based observations of loops has been obtained in various widely-spaced regions of the electromagnetic spectrum. In this book the authors have selected the best observational material from the literature on which to base a detailed account of the properties of flare and non-flare loops. The book also explores the larger implications of the loop structures for our understanding of solar and stellar coronae. The text is enhanced by a large number of illustrations and unique and beautiful photographs obtained from the ground and from space.

  1. Space Station evolution study oxygen loop closure

    NASA Technical Reports Server (NTRS)

    Wood, M. G.; Delong, D.

    1993-01-01

    In the current Space Station Freedom (SSF) Permanently Manned Configuration (PMC), physical scars for closing the oxygen loop by the addition of oxygen generation and carbon dioxide reduction hardware are not included. During station restructuring, the capability for oxygen loop closure was deferred to the B-modules. As such, the ability to close the oxygen loop in the U.S. Laboratory module (LAB A) and the Habitation A module (HAB A) is contingent on the presence of the B modules. To base oxygen loop closure of SSF on the funding of the B-modules may not be desirable. Therefore, this study was requested to evaluate the necessary hooks and scars in the A-modules to facilitate closure of the oxygen loop at or subsequent to PMC. The study defines the scars for oxygen loop closure with impacts to cost, weight and volume and assesses the effects of byproduct venting. In addition, the recommended scenarios for closure with regard to topology and packaging are presented.

  2. Homework Completion at the Secondary School Level: A Multilevel Analysis

    ERIC Educational Resources Information Center

    Xu, Jianzhong

    2011-01-01

    The author aimed to test empirical models of variables posited to predict homework completion at the secondary school level. Student- and class-level predictors of homework completion were analyzed in a survey of 1,046 8th-grade students from 63 classes and of 849 11th-grade students from 48 classes. Most of the variance in homework completion…

  3. Integration of calcium and chemical looping combustion using composite CaO/CuO-based materials.

    PubMed

    Manovic, Vasilije; Anthony, Edward J

    2011-12-15

    Calcium looping cycles (CaL) and chemical looping combustion (CLC) are two new, developing technologies for reduction of CO(2) emissions from plants using fossil fuels for energy production, which are being intensively examined. Calcium looping is a two-stage process, which includes oxy-fuel combustion for sorbent regeneration, i.e., generation of a concentrated CO(2) stream. This paper discuss the development of composite materials which can use copper(II)-oxide (CuO) as an oxygen carrier to provide oxygen for the sorbent regeneration stage of calcium looping. In other words, the work presented here involves integration of calcium looping and chemical looping into a new class of postcombustion CO(2) capture processes designated as integrated CaL and CLC (CaL-CLC or Ca-Cu looping cycles) using composite pellets containing lime (CaO) and CuO together with the addition of calcium aluminate cement as a binder. Their activity was tested in a thermogravimetric analyzer (TGA) during calcination/reduction/oxidation/carbonation cycles. The calcination/reduction typically was performed in methane (CH(4)), and the oxidation/carbonation stage was carried out using a gas mixture containing both CO(2) and O(2). It was confirmed that the material synthesized is suitable for the proposed cycles; with the very favorable finding that reduction/oxidation of the oxygen carrier is complete. Various schemes for the Ca-Cu looping process have been explored here that would be compatible with these new composite materials, along with some different possibilities for flow directions among carbonator, calciner, and air reactor.

  4. Beat to beat variability in cardiovascular variables: noise or music?

    NASA Technical Reports Server (NTRS)

    Appel, M. L.; Berger, R. D.; Saul, J. P.; Smith, J. M.; Cohen, R. J.

    1989-01-01

    Cardiovascular variables such as heart rate, arterial blood pressure, stroke volume and the shape of electrocardiographic complexes all fluctuate on a beat to beat basis. These fluctuations have traditionally been ignored or, at best, treated as noise to be averaged out. The variability in cardiovascular signals reflects the homeodynamic interplay between perturbations to cardiovascular function and the dynamic response of the cardiovascular regulatory systems. Modern signal processing techniques provide a means of analyzing beat to beat fluctuations in cardiovascular signals, so as to permit a quantitative, noninvasive or minimally invasive method of assessing closed loop hemodynamic regulation and cardiac electrical stability. This method promises to provide a new approach to the clinical diagnosis and management of alterations in cardiovascular regulation and stability.

  5. Loops In Proteins (LIP)--a comprehensive loop database for homology modelling.

    PubMed

    Michalsky, E; Goede, A; Preissner, R

    2003-12-01

    One of the most important and challenging tasks in protein modelling is the prediction of loops, as can be seen in the large variety of existing approaches. Loops In Proteins (LIP) is a database that includes all protein segments of a length up to 15 residues contained in the Protein Data Bank (PDB). In this study, the applicability of LIP to loop prediction in the framework of homology modelling is investigated. Searching the database for loop candidates takes less than 1 s on a desktop PC, and ranking them takes a few minutes. This is an order of magnitude faster than most existing procedures. The measure of accuracy is the root mean square deviation (RMSD) with respect to the main-chain atoms after local superposition of target loop and predicted loop. Loops of up to nine residues length were modelled with a local RMSD <1 A and those of length up to 14 residues with an accuracy better than 2 A. The results were compared in detail with a thoroughly evaluated and tested ab initio method published recently and additionally with two further methods for a small loop test set. The LIP method produced very good predictions. In particular for longer loops it outperformed other methods.

  6. Structure of a cardiotoxic phospholipase A(2) from Ophiophagus hannah with the "pancreatic loop".

    PubMed

    Zhang, Hai-Long; Xu, Su-Juan; Wang, Qiu-Yan; Song, Shi-Ying; Shu, Yu-Yan; Lin, Zheng-Jiong

    2002-06-01

    The crystal structure of an acidic phospholipase A(2) from Ophiophagus hannah (king cobra) has been determined by molecular replacement at 2.6-A resolution to a crystallographic R factor of 20.5% (R(free)=23.3%) with reasonable stereochemistry. The venom enzyme contains an unusual "pancreatic loop." The conformation of the loop is well defined and different from those in pancreas PLA(2), showing its structural variability. This analysis provides the first structure of a PLA(2)-type cardiotoxin. The sites related to the cardiotoxic and myotoxic activities are explored and the oligomer observed in the crystalline state is described. PMID:12217659

  7. The effecf of non-costant initial matterial flow on coronal loop oscillations

    NASA Astrophysics Data System (ADS)

    Safari, Hossein; Gheibi, Akbar

    2016-07-01

    The effecf of non-costant initial matterial flow on coronal loop oscillations We investigate The effecf of non-costant initial matterial flow on coronal loop osillations. The ideal linearized MHD equations in the presense of spatially variable fluid flow, costant magnetic field, longitudially strafied density, and adibatic process is reduced to a single ordinary differential equation for velocity potential. We showed that the plasma speed of oscillations is shifted by value of folw speed.In the case of rotational flow, the phase speed is a fuction of tube speed, but for irrotational flow the phase speed is equal to fast speed.

  8. Numerical Simulations of Power Law Heating Functions for Quiescent Loops: Stability and Observables

    NASA Astrophysics Data System (ADS)

    Martens, P. C.; Winter, H. D.; Munetsi-Mugomba, K.

    2007-12-01

    We present the numerical simulations of quiescent coronal loops with heating functions that are power law functions of pressure and temperature. These simulations are made using a time-dependent, 1D hydrodynamics code with heating functions that are treated as dynamic variables which are constantly re- evaluated during the loops' lifetimes. These numerical simulations provide a stability test for the analytical solutions formulated by Martens (2007, submitted) for the same heating functions. TRACE and XRT datasets are simulated to determine if present observables can provide adequate information to discriminate between power law heating functions.

  9. Automated classification of antibody complementarity determining region 3 of the heavy chain (H3) loops into canonical forms and its application to protein structure prediction.

    PubMed

    Oliva, B; Bates, P A; Querol, E; Avilés, F X; Sternberg, M J

    1998-06-26

    A computer-based algorithm was used to cluster the loops forming the complementarity determining region (CDR) 3 of the heavy chain (H3) into canonical classes. Previous analyses of the three-dimensional structures of CDR loops (also known as the hypervariable regions) within antibody immunoglobulin variable domains have shown that for five of the six CDRs there are only a few main-chain conformations (known as canonical forms) that show clear relationships between sequence and structure. However, the larger variation in length and conformation of loops within H3 has limited the classification of these loops into canonical forms. The clustering procedure presented here is based on aligning the Ramachandran-coded main-chain conformation of the residues using a dynamic algorithm that allows the insertion of gaps to obtain an optimum alignment. A total of 41 H3 loops out of 62 non-identical loops, extracted from the Brookhaven Protein Data Bank, have been automatically grouped into 22 clusters. Inspection of the clusters for consensus sequences or intra-loop interactions or invariant conformation led to the proposal of 13 canonical forms representing 31 loops. These canonical forms include a consideration of the geometry of both the take-off region adjacent to the bracing beta-strands and the remaining loop apex. Subsequently a new set of 15 H3 loops not included in the initial analysis was considered. The clustering procedure was repeated and nine of these 15 loops could be assigned to original clusters, including seven to canonical forms. A sequence profile was generated for each canonical form from the original set of loops and matched against the sequences of the new H3 loops. For five out of the seven new H3 loops that were in a canonical form, the correct form was identified at first rank by this predictive scheme. PMID:9642095

  10. Complete mitochondrial genome organization of Tor tor (Hamilton, 1822).

    PubMed

    Kumar, Rohit; Goel, Chirag; Kumari Sahoo, Prabhati; Singh, Atul K; Barat, Ashoktaru

    2016-07-01

    The complete mitochondrial genome of Tor tor, a threatened "Mahseer" was sequenced for the first time. The mitochondrial genome size determined to be 16,554 bp in length and consisted of 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNA genes and a control region or displacement loop (D-Loop) region, resembling the typical organizational pattern of most of the teleost. The overall base composition found was A: 31.8%, T: 25%, G: 15.7% and C: 27.4%; A + T: 56.9% and G + C: 43.1%. The phylogenetic tree constructed using 11 other cyprinids' total mtDNA datasets confirmed the location of present species among mahseers. The total sequence data could support further study in molecular systematics, species identification, evolutionary and conservation genetics.

  11. The constant current loop - A new paradigm for resistance signal conditioning

    NASA Technical Reports Server (NTRS)

    Anderson, Karl F.

    1993-01-01

    A practical single constant current loop circuit for the signal conditioning of variable-resistance transducers has been synthesized, analyzed, and demonstrated. The strain gage and the resistance temperature device are examples of variable-resistance sensors. Lead wires connect variable-resistance sensors to remotely located signal-conditioning hardware. The presence of lead wires in the conventional Wheatstone bridge signal-conditioning circuit introduces undesired effects that reduce the quality of the data from the remote sensors. A practical approach is presented for suppressing essentially all lead wire resistance effects while indicating only the change in resistance value. An adaptation of the current loop circuit is presented that simultaneously provides an output signal voltage directly proportional to transducer resistance change and provides temperature information that is unaffected by transducer and lead wire resistance variations.

  12. Predictors of completed childhood vaccination in Bolivia

    PubMed Central

    Osetinsky, Brianna; Gaydos, Laura M; Leon, Juan S

    2015-01-01

    This project examines how access issues, ethnicity, and geographic region affect vaccination of children by two years of age in Bolivia. Bolivia’s rich variation in culture and geography results in unequal healthcare utilization even for basic interventions such as childhood vaccination. This study utilizes secondary data from the 2008 Demographic and Health Survey for Bolivia to examine predictors of vaccination completion in children by two years of age. Using logistic regression methods, we control for health system variables (difficulty getting to a health center and type of health center as well as demographic and socio-economic covariates). The results indicated that children whose parents reported distance as a problem in obtaining health care were less likely to have completed all vaccinations. Ethnicity was not independently statistically significant, however, in a sub-analysis, people from the Quechua ethnic group were more likely to report ‘distance as a problem in obtaining healthcare.’ Surprisingly, living in a rural environment has a protective effect on completed vaccinations. However, geographic region did predict significant differences in the probability that children would be fully vaccinated; children in the region with the lowest vaccination completion coverage were 80% less likely to have completed vaccination compared to children in the best performing region, which may indicate unequal access and utilization of health services nationally. Further study of regional differences, urbanicity, and distance as a healthcare access problem will help refine implications for the Bolivian health system. PMID:26609338

  13. Near-Native Protein Loop Sampling Using Nonparametric Density Estimation Accommodating Sparcity

    PubMed Central

    Day, Ryan; Lennox, Kristin P.; Sukhanov, Paul; Dahl, David B.; Vannucci, Marina; Tsai, Jerry

    2011-01-01

    Unlike the core structural elements of a protein like regular secondary structure, template based modeling (TBM) has difficulty with loop regions due to their variability in sequence and structure as well as the sparse sampling from a limited number of homologous templates. We present a novel, knowledge-based method for loop sampling that leverages homologous torsion angle information to estimate a continuous joint backbone dihedral angle density at each loop position. The φ,ψ distributions are estimated via a Dirichlet process mixture of hidden Markov models (DPM-HMM). Models are quickly generated based on samples from these distributions and were enriched using an end-to-end distance filter. The performance of the DPM-HMM method was evaluated against a diverse test set in a leave-one-out approach. Candidates as low as 0.45 Å RMSD and with a worst case of 3.66 Å were produced. For the canonical loops like the immunoglobulin complementarity-determining regions (mean RMSD <2.0 Å), the DPM-HMM method performs as well or better than the best templates, demonstrating that our automated method recaptures these canonical loops without inclusion of any IgG specific terms or manual intervention. In cases with poor or few good templates (mean RMSD >7.0 Å), this sampling method produces a population of loop structures to around 3.66 Å for loops up to 17 residues. In a direct test of sampling to the Loopy algorithm, our method demonstrates the ability to sample nearer native structures for both the canonical CDRH1 and non-canonical CDRH3 loops. Lastly, in the realistic test conditions of the CASP9 experiment, successful application of DPM-HMM for 90 loops from 45 TBM targets shows the general applicability of our sampling method in loop modeling problem. These results demonstrate that our DPM-HMM produces an advantage by consistently sampling near native loop structure. The software used in this analysis is available for download at http

  14. Analysis of the complete mitochondrial genome and characterization of diverse NUMTs of Macaca leonina.

    PubMed

    Hu, Qiu-Xiang; Fan, Yu; Xu, Ling; Pang, Wei; Wang, Shuang; Zheng, Yong-Tang; Lv, Long-Bao; Yao, Yong-Gang

    2015-10-25

    As a non-human primate, the pig-tailed macaque has received wide attention because it can be infected by HIV-1. In this study, we determined the complete mtDNA sequence of the northern pig-tailed macaque (Macaca leonina). Unexpectedly, during the amplification of the mtDNA control region (D-loop region) we observed several D-loop-like sequences, which were NUMTs (nuclear mitochondrial sequences) and a total of 14 D-loop-like NUMT haplotypes were later identified in five individuals. The neighbor-joining tree and estimated divergence time based on these D-loop-like NUMT sequences of M. leonina provide some insights into the understanding of the evolutionary history of NUMTs. D-loop-like haplotypes G and H, which also exist in the nuclear genome of mulatta, appear to have been translocated into the nuclear genome before the divergence of M. mulatta and M. leonina. The other D-loop-like NUMT haplotypes were translocated into the nuclear genome of M. leonina after the divergence of the two species. Later sequence conversion was predicted to occur among these 14 D-loop-like NUMT haplotypes. The overall structure of the mtDNA of M. leonina was found to be similar to that seen in other mammalian mitochondrial genomes. Phylogenetic analysis based on the maximum likelihood method shows M. leonina clustered with Macaca silenus among the analyzed mammalian species.

  15. Hanford Tank Farms Waste Feed Flow Loop Phase VI: PulseEcho System Performance Evaluation

    SciTech Connect

    Denslow, Kayte M.; Bontha, Jagannadha R.; Adkins, Harold E.; Jenks, Jeromy WJ; Hopkins, Derek F.

    2012-11-21

    This document presents the visual and ultrasonic PulseEcho critical velocity test results obtained from the System Performance test campaign that was completed in September 2012 with the Remote Sampler Demonstration (RSD)/Waste Feed Flow Loop cold-test platform located at the Monarch test facility in Pasco, Washington. This report is intended to complement and accompany the report that will be developed by WRPS on the design of the System Performance simulant matrix, the analysis of the slurry test sample concentration and particle size distribution (PSD) data, and the design and construction of the RSD/Waste Feed Flow Loop cold-test platform.

  16. A Rare Cause of Chronic Life Threatening Bleeding in a Girl: The Ulcerated Blind Loops

    PubMed Central

    Shah, Rasik; Shah, Nitin; Gupta, Tarun

    2016-01-01

    Ulceration in a blind loop can lead to massive gastrointestinal tract (GIT) bleeding. A 13-year old girl presented with symptomatic melena requiring repeated blood transfusion since childhood. She was an operated case of small bowel atresia in neonatal life. Her upper and lower gastrointestinal endoscopies were normal. Operation showed presence of multiple ulcers in two blind loops (parts of previous side to side anastomosis) and at the anastomotic site. She underwent resection and end-to-end anastomosis of the small bowel leading to complete resolution of melena and anemia. PMID:27170918

  17. Two-loop Feynman-gauge calculation of the meson nonsinglet evolution potential

    SciTech Connect

    Katz, G.R.

    1985-02-01

    Recently, three independent determinations of the two-loop meson nonsinglet evolution potential have been completed. Two of them are an explicit light-cone-gauge calculation while the third is a less direct evaluation based on conformal symmetry. However, all three calculations disagree in the C/sub F/ /sup 2/ term. In this paper I present the results of a Feynman-gauge evaluation of Gegenbauer matrix elements (V/sub 2/)/sub mj/ of the C/sub F/ /sup 2/ part of the two-loop meson nonsinglet evolution potential. The results confirm one of the light-cone-gauge calculations.

  18. An Antibody Loop Replacement Design Feasibility Study and a Loop-Swapped Dimer Structure

    SciTech Connect

    Clark, L.; Boriack-Sjodin, P; Day, E; Eldredge, J; Fitch, C; Jarpe, M; Miller, S; Li, Y; Simon, K; van Vlijmen, H

    2009-01-01

    A design approach was taken to investigate the feasibility of replacing single complementarity determining region (CDR) antibody loops. This approach may complement simpler mutation-based strategies for rational antibody design by expanding conformation space. Enormous crystal structure diversity is available, making CDR loops logical targets for structure-based design. A detailed analysis for the L1 loop shows that each loop length takes a distinct conformation, thereby allowing control on a length scale beyond that accessible to simple mutations. The L1 loop in the anti-VLA1 antibody was replaced with the L2 loop residues longer in an attempt to add an additional hydrogen bond and fill space on the antibody-antigen interface. The designs expressed well, but failed to improve affinity. In an effort to learn more, one design was crystallized and data were collected at 1.9 {angstrom} resolution. The designed L1 loop takes the qualitatively desired conformation; confirming that loop replacement by design is feasible. The crystal structure also shows that the outermost loop (residues Leu51-Ser68) is domain swapped with another monomer. Tryptophan fluorescence measurements were used to monitor unfolding as a function of temperature and indicate that the loop involved in domain swapping does not unfold below 60C. The domain-swapping is not directly responsible for the affinity loss, but is likely a side-effect of the structural instability which may contribute to affinity loss. A second round of design was successful in eliminating the dimerization through mutation of a residue (Leu51Ser) at the joint of the domain-swapped loop.

  19. Mechanics of Protein-Mediated DNA Looping

    NASA Astrophysics Data System (ADS)

    Meiners, Jens-Christian

    2009-03-01

    The formation of looped DNA-protein complexes in which a protein or protein assembly binds to multiple distant operator sites on the DNA is a common feature for many regulatory schemes on the transcriptional level. In a living cell, a multitude of mechanical forces and constraints act on these complexes, and it is imperative to understand their effects on biological function. For this aim, we study the lactose repressor as a model system for protein-mediated DNA looping in single-molecule experiments. Using a novel axial constant-force optical trapping scheme that allows us to manipulate sub-micron DNA fragments with well-controlled forces down to the 10 fN range, we show that mechanical tension in the substrate DNA of hundred femtonewton is sufficient to disrupt the loop formation process, which suggests that such mechanical tension may provide a mechanical pathway to controlling gene expression in vivo. From the force sensitivity of the loop formation process, we can also infer the topology of the looped complex; in our case an antiparallel conformation. In addition, we will present new tethered-particle microscopy data that shows lifetimes of the looped complexes that are two to three orders of magnitude shorter than those measured in biochemical competition assays and discuss possible interpretations, including the suggestion that operator binding of the lactose repressor tetramer leads to a destabilization of the dimer-dimer interface and that thus the loop breakdown process is mostly a dissociation of the tetramer into two dimers, instead, as widely assumed, an unbinding of the tetramer from the DNA.

  20. Acquisition Performances Of QPSK Carrier-Tracking Loops

    NASA Technical Reports Server (NTRS)

    Hinedi, Sami M.; Shah, Biren N.

    1992-01-01

    Report presents comparative study of acquisition performances of several types of carrier-signal-tracking loops for reception of quadrature phase-shift keying (QPSK) signals. Loops classified into three types: maximum a-posteriori, (MAP) estimation loop, Costas cross-over loop, and generalized Costas loop. Mathematical models developed. In-phase and quadrature signals generated numerically and processed according to loop algorithms. Results show though MAP loop produces smallest squaring loss at all signal-to-noise ratios, others sometimes exhibit shorter acquisition time and greater probability of acquisition.

  1. A dynamic loop at the active center of the Escherichia coli pyruvate dehydrogenase complex E1 component modulates substrate utilization and chemical communication with the E2 component.

    PubMed

    Kale, Sachin; Arjunan, Palaniappa; Furey, William; Jordan, Frank

    2007-09-21

    Our crystallographic studies have shown that two active center loops (an inner loop formed by residues 401-413 and outer loop formed by residues 541-557) of the E1 component of the Escherichia coli pyruvate dehydrogenase complex become organized only on binding a substrate analog that is capable of forming a stable thiamin diphosphate-bound covalent intermediate. We showed that residue His-407 on the inner loop has a key role in the mechanism, especially in the reductive acetylation of the E. coli dihydrolipoamide transacetylase component, whereas crystallographic results showed a role of this residue in a disorder-order transformation of these two loops, and the ordered conformation gives rise to numerous new contacts between the inner loop and the active center. We present mapping of the conserved residues on the inner loop. Kinetic, spectroscopic, and crystallographic studies on some inner loop variants led us to conclude that charged residues flanking His-407 are important for stabilization/ordering of the inner loop thereby facilitating completion of the active site. The results further suggest that a disorder to order transition of the dynamic inner loop is essential for substrate entry to the active site, for sequestering active site chemistry from undesirable side reactions, as well as for communication between the E1 and E2 components of the E. coli pyruvate dehydrogenase multienzyme complex.

  2. LoopWeaver: Loop Modeling by the Weighted Scaling of Verified Proteins

    PubMed Central

    Li, Shuai Cheng; Li, Ming

    2013-01-01

    Abstract Modeling loops is a necessary step in protein structure determination, even with experimental nuclear magnetic resonance (NMR) data, it is widely known to be difficult. Database techniques have the advantage of producing a higher proportion of predictions with subangstrom accuracy when compared with ab initio techniques, but the disadvantage of also producing a higher proportion of clashing or highly inaccurate predictions. We introduce LoopWeaver, a database method that uses multidimensional scaling to achieve better, clash-free placement of loops obtained from a database of protein structures. This allows us to maintain the above-mentioned advantage while avoiding the disadvantage. Test results show that we achieve significantly better results than all other methods, including Modeler, Loopy, SuperLooper, and Rapper, before refinement. With refinement, our results (LoopWeaver and Loopy consensus) are better than ROSETTA, with 0.42 Å RMSD on average for 206 length 6 loops, 0.64 Å local RMSD for 168 length 7 loops, 0.81Å RMSD for 117 length 8 loops, and 0.98 Å RMSD for length 9 loops, while ROSETTA has 0.55, 0.79, 1.16, 1.42, respectively, at the same average time limit (3 hours). When we allow ROSETTA to run for over a week, it approaches, but does not surpass, our accuracy. PMID:23461572

  3. Students' Understanding of Loops and Nested Loops in Computer Programming: An APOS Theory Perspective

    ERIC Educational Resources Information Center

    Cetin, Ibrahim

    2015-01-01

    The purpose of this study is to explore students' understanding of loops and nested loops concepts. Sixty-three mechanical engineering students attending an introductory programming course participated in the study. APOS (Action, Process, Object, Schema) is a constructivist theory developed originally for mathematics education. This study is the…

  4. Complete mitochondrial genome of Cynopterus sphinx (Pteropodidae: Cynopterus).

    PubMed

    Li, Linmiao; Li, Min; Wu, Zhengjun; Chen, Jinping

    2015-01-01

    We have characterized the complete mitochondrial genome of Cynopterus sphinx (Pteropodidae: Cynopterus) and described its organization in this study. The total length of C. sphinx complete mitochondrial genome was 16,895 bp with the base composition of 32.54% A, 14.05% G, 25.82% T and 27.59% C. The complete mitochondrial genome included 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes (12S rRNA and 16S rRNA) and 1 control region (D-loop). The control region was 1435 bp long with the sequence CATACG repeat 64 times. Three protein-coding genes (ND1, COI and ND4) were ended with incomplete stop codon TA or T. PMID:24409875

  5. TRANSVERSE OSCILLATIONS OF A COOLING CORONAL LOOP

    SciTech Connect

    Morton, R. J.; Erdelyi, R. E-mail: Robertus@sheffield.ac.u

    2009-12-10

    Here we present an investigation into how cooling of the plasma influences the oscillation properties (e.g., eigenfunctions and eigenfrequencies) of transverse (i.e., kink) magnetohydrodynamic (MHD) waves in a compressible magnetic flux tube embedded in a gravitationally stratified and uniformly magnetized atmosphere. The cooling is introduced via a temperature-dependent density profile. A time-dependent governing equation is derived and an approximate zeroth-order solution is then obtained. From this the influence of cooling on the behavior of the eigenfrequencies and eigenfunctions of the transverse MHD waves is determined for representative cooling timescales. It is shown analytically, as the loop cools, how the amplitude of the perturbations is found to decrease as time increases. For cooling timescales of 900-2000 s (as observed in typical EUV loops), it is shown that the cooling has important and relevant influence on the damping times of loop oscillations. Next, the theory is put to the test. The damping due to cooling is fitted to a representative observation of standing kink oscillation of EUV loops. It is also shown with an explicit approximate analytical form, how the period of the fundamental and first harmonic of the kink mode changes with time as the loop cools. A consequence of this is that the value of the period ratio P {sub 1}/P {sub 2}, a tool that is popular in magneto-seismological studies in coronal diagnostics, decreases from the value of a uniform loop, 2, as the temperature decreases. The rate of change in P {sub 1}/P {sub 2} is dependent upon the cooling timescale and is well within the observable range for typical EUV loops. Further to this, the magnitude of the anti-node shift of the eigenfunctions of the first harmonic is shown to continually increase as the loop cools, giving additional impetus to the use of spatial magneto-seismology of the solar atmosphere. Finally, we suggest that measurements of the rate of change in the

  6. Loop modeling: Sampling, filtering, and scoring

    PubMed Central

    Soto, Cinque S; Fasnacht, Marc; Zhu, Jiang; Forrest, Lucy; Honig, Barry

    2008-01-01

    We describe a fast and accurate protocol, LoopBuilder, for the prediction of loop conformations in proteins. The procedure includes extensive sampling of backbone conformations, side chain addition, the use of a statistical potential to select a subset of these conformations, and, finally, an energy minimization and ranking with an all-atom force field. We find that the Direct Tweak algorithm used in the previously developed LOOPY program is successful in generating an ensemble of conformations that on average are closer to the native conformation than those generated by other methods. An important feature of Direct Tweak is that it checks for interactions between the loop and the rest of the protein during the loop closure process. DFIRE is found to be a particularly effective statistical potential that can bias conformation space toward conformations that are close to the native structure. Its application as a filter prior to a full molecular mechanics energy minimization both improves prediction accuracy and offers a significant savings in computer time. Final scoring is based on the OPLS/SBG-NP force field implemented in the PLOP program. The approach is also shown to be quite successful in predicting loop conformations for cases where the native side chain conformations are assumed to be unknown, suggesting that it will prove effective in real homology modeling applications. Proteins 2008. © 2007 Wiley-Liss, Inc. PMID:17729286

  7. Void growth by dislocation-loop emission

    NASA Astrophysics Data System (ADS)

    Ahn, D. C.; Sofronis, P.; Kumar, M.; Belak, J.; Minich, R.

    2007-03-01

    Experimental results from spall tests on aluminum reveal the presence of a dense dislocation structure in an annulus around a void that grew under the tensile pulse when a shock wave was reflected at the free surface of the specimen. The proposition is that dislocation emission from the void surface under load is a viable mechanism for void growth. To understand void growth in the absence of diffusive effects, the interstitial-loop emission mechanism under tensile hydrostatic stress is investigated. First, the micromechanics of pile-up formation when interstitial loops are emitted from a void under applied macroscopic loading is reviewed. Demand for surface energy expenditure upon void-surface change is taken into consideration. It is demonstrated that in face-centered cubic metals loop emission from voids with a radius of ˜10 nm is indeed energetically possible in the hydrostatic stress environment generated by shock loading. On the other hand, the levels of hydrostatic stress prevalent in common structural applications are not sufficient to drive loops at equilibrium positions above a ˜10 nm void. However, for voids larger than about 100 nm, the energetics of loop emission are easily met as a necessary condition even under the low stress environment prevalent in structural applications.

  8. Bootstrapping the Three-Loop Hexagon

    SciTech Connect

    Dixon, Lance J.; Drummond, James M.; Henn, Johannes M.; /Humboldt U., Berlin /Santa Barbara, KITP

    2011-11-08

    We consider the hexagonal Wilson loop dual to the six-point MHV amplitude in planar N = 4 super Yang-Mills theory. We apply constraints from the operator product expansion in the near-collinear limit to the symbol of the remainder function at three loops. Using these constraints, and assuming a natural ansatz for the symbol's entries, we determine the symbol up to just two undetermined constants. In the multi-Regge limit, both constants drop out from the symbol, enabling us to make a non-trivial confirmation of the BFKL prediction for the leading-log approximation. This result provides a strong consistency check of both our ansatz for the symbol and the duality between Wilson loops and MHV amplitudes. Furthermore, we predict the form of the full three-loop remainder function in the multi-Regge limit, beyond the leading-log approximation, up to a few constants representing terms not detected by the symbol. Our results confirm an all-loop prediction for the real part of the remainder function in multi-Regge 3 {yields} 3 scattering. In the multi-Regge limit, our result for the remainder function can be expressed entirely in terms of classical polylogarithms. For generic six-point kinematics other functions are required.

  9. Fatigue-Resistant Metal Hook-And-Loop Fastener

    NASA Technical Reports Server (NTRS)

    Sawaf, Bernard

    1994-01-01

    Proposed metal hook-and-loop fastener engaged and disengaged many hundreds of times without breaking. Fastener opens by mechanical action. Translation moves hooks out of loops or pushes loops away from hooks. Hooks not required to flex and, therefore, do not fail by fatigue. Lifetime much greater than that of other metal hook-and-loop fasteners, depending on flexure for disengagement such as article, "Hook-and-Loop Metal Fastener" (MSC-21586).

  10. Hot topic, warm loops, cooling plasma? Multithermal analysis of active region loops

    SciTech Connect

    Schmelz, J. T.; Pathak, S.; Christian, G. M.; Dhaliwal, R. S.; Brooks, D. H.

    2014-11-10

    We have found indications of a relationship between the differential emission measure (DEM) weighted temperature and the cross-field DEM width for coronal loops. The data come from the Hinode X-ray Telescope, the Hinode EUV Imaging Spectrometer, and the Solar Dynamics Observatory Atmospheric Imaging Assembly. These data show that cooler loops tend to have narrower DEM widths. If most loops observed by these instruments are composed of bundles of unresolved magnetic strands and are only observed in their cooling phase, as some studies have suggested, then this relationship implies that the DEM of a coronal loop narrows as it cools. This could imply that fewer strands are seen emitting in the later cooling phase, potentially resolving the long standing controversy of whether the cross-field temperatures of coronal loops are multithermal or isothermal.

  11. Hot Topic, Warm Loops, Cooling Plasma? Multithermal Analysis of Active Region Loops

    NASA Astrophysics Data System (ADS)

    Schmelz, J. T.; Pathak, S.; Brooks, D. H.; Christian, G. M.; Dhaliwal, R. S.

    2014-11-01

    We have found indications of a relationship between the differential emission measure (DEM) weighted temperature and the cross-field DEM width for coronal loops. The data come from the Hinode X-ray Telescope, the Hinode EUV Imaging Spectrometer, and the Solar Dynamics Observatory Atmospheric Imaging Assembly. These data show that cooler loops tend to have narrower DEM widths. If most loops observed by these instruments are composed of bundles of unresolved magnetic strands and are only observed in their cooling phase, as some studies have suggested, then this relationship implies that the DEM of a coronal loop narrows as it cools. This could imply that fewer strands are seen emitting in the later cooling phase, potentially resolving the long standing controversy of whether the cross-field temperatures of coronal loops are multithermal or isothermal.

  12. The performance of optical phase-locked loops in the presence of nonnegligible loop propagation delay

    NASA Astrophysics Data System (ADS)

    Grant, M. A.; Michie, W. C.; Fletcher, M. J.

    1987-04-01

    The optical phase-locked loop is analyzed taking into account shot noise, phase noise, and loop propagation delay. The degradation of loop phase error due to propagation delay is evaluated in terms of the delay bandwidth product. This product was found to have a maximum value of 0.736 for absolute loop stability. The resulting effect on a Costas loop system optimized for zero time delay is discussed. It is found that in order to maintain a 10 to the -9th BER system performance with the damping factor = 1/2 exp 0.5, responsivity of the photodiode = 0.85 A/W, power at the data detector = -59.2 dBm, and a 1-MHz beat linewidth, the delay time must be kept below 1.8 ns. If the beat linewidth increases to 15 MHz this figure drops to 0.12 ns.

  13. Linear phase demodulator including a phase locked loop with auxiliary feedback loop

    NASA Technical Reports Server (NTRS)

    Rippy, R. R. (Inventor)

    1976-01-01

    A phase modulated wave that may have no carrier power is demodulated by a phase locked loop including a phase detector for deriving an A.C. data output signal having a magnitude and a phase indicative of the phase of the modulated wave. A feedback loop responsive to the data output signal restores power to the carrier frequency component to the loop. In one embodiment, the feedback loop includes a phase modulator responsive to the phase modulated wave and the data output signal. In a second embodiment, carrier frequency power is restored by differentiating the data output signal and supplying the differentiated signal to an input of a voltage controlled oscillator included in the phase locked loop.

  14. The Complete Mitochondrial Genomes of Six Species of Tetranychus Provide Insights into the Phylogeny and Evolution of Spider Mites

    PubMed Central

    Chen, Da-Song; Jin, Peng-Yu; Zhang, Kai-Jun; Ding, Xiu-Lei; Yang, Si-Xia; Ju, Jia-Fei; Zhao, Jing-Yu; Hong, Xiao-Yue

    2014-01-01

    Many spider mites belonging to the genus Tetranychus are of agronomical importance. With limited morphological characters, Tetranychus mites are usually identified by a combination of morphological characteristics and molecular diagnostics. To clarify their molecular evolution and phylogeny, the mitochondrial genomes of the green and red forms of Tetranychus urticae as well as T. kanzawai, T. ludeni, T. malaysiensis, T. phaselus, T. pueraricola were sequenced and compared. The seven mitochondrial genomes are typical circular molecules of about 13,000 bp encoding and they are composed of the complete set of 37 genes that are usually found in metazoans. The order of the mitochondrial (mt) genes is the same as that in the mt genomes of Panonychus citri and P. ulmi, but very different from that in other Acari. The J-strands of the mitochondrial genomes have high (∼84%) A+T contents, negative GC-skews and positive AT-skews. The nucleotide sequence of the cox1 gene, which is commonly used as a taxon barcode and molecular marker, is more highly conserved than the nucleotide sequences of other mitochondrial genes in these seven species. Most tRNA genes in the seven genomes lose the D-arm and/or the T-arm. The functions of these tRNAs need to be evaluated. The mitochondrial genome of T. malaysiensis differs from the other six genomes in having a slightly smaller genome size, a slight difference in codon usage, and a variable loop in place of the T-arm of some tRNAs by a variable loop. A phylogenic analysis shows that T. malaysiensis first split from other Tetranychus species and that the clade of the family Tetranychoidea occupies a basal position in the Trombidiformes. The mt genomes of the green and red forms of T. urticae have limited divergence and short evolutionary distance. PMID:25329165

  15. The complete mitochondrial genomes of six species of Tetranychus provide insights into the phylogeny and evolution of spider mites.

    PubMed

    Chen, Da-Song; Jin, Peng-Yu; Zhang, Kai-Jun; Ding, Xiu-Lei; Yang, Si-Xia; Ju, Jia-Fei; Zhao, Jing-Yu; Hong, Xiao-Yue

    2014-01-01

    Many spider mites belonging to the genus Tetranychus are of agronomical importance. With limited morphological characters, Tetranychus mites are usually identified by a combination of morphological characteristics and molecular diagnostics. To clarify their molecular evolution and phylogeny, the mitochondrial genomes of the green and red forms of Tetranychus urticae as well as T. kanzawai, T. ludeni, T. malaysiensis, T. phaselus, T. pueraricola were sequenced and compared. The seven mitochondrial genomes are typical circular molecules of about 13,000 bp encoding and they are composed of the complete set of 37 genes that are usually found in metazoans. The order of the mitochondrial (mt) genes is the same as that in the mt genomes of Panonychus citri and P. ulmi, but very different from that in other Acari. The J-strands of the mitochondrial genomes have high (∼ 84%) A+T contents, negative GC-skews and positive AT-skews. The nucleotide sequence of the cox1 gene, which is commonly used as a taxon barcode and molecular marker, is more highly conserved than the nucleotide sequences of other mitochondrial genes in these seven species. Most tRNA genes in the seven genomes lose the D-arm and/or the T-arm. The functions of these tRNAs need to be evaluated. The mitochondrial genome of T. malaysiensis differs from the other six genomes in having a slightly smaller genome size, a slight difference in codon usage, and a variable loop in place of the T-arm of some tRNAs by a variable loop. A phylogenic analysis shows that T. malaysiensis first split from other Tetranychus species and that the clade of the family Tetranychoidea occupies a basal position in the Trombidiformes. The mt genomes of the green and red forms of T. urticae have limited divergence and short evolutionary distance.

  16. Complete to Compete: Common College Completion Metrics. Technical Guide

    ERIC Educational Resources Information Center

    Reyna, Ryan; Reindl, Travis; Witham, Keith; Stanley, Jeff

    2010-01-01

    Improved college completion rates are critical to the future of the United States, and states must have better data to understand the nature of the challenges they confront or target areas for policy change. The 2010-2011 National Governors Association (NGA) Chair's initiative, "Complete to Compete", recommends that all states collect data from…

  17. Loop contributions to the folding thermodynamics of DNA straight hairpin loops and pseudoknots.

    PubMed

    Reiling, Calliste; Khutsishvili, Irine; Huang, Kai; Marky, Luis A

    2015-02-01

    Pseudoknots have diverse and important roles in many biological functions. We used a combination of UV spectroscopy and differential scanning calorimetry to investigate the effect of the loop length on the unfolding thermodynamics of three sets of DNA stem-loop motifs with the following sequences: (a) d(GCGCTnGCGC), where n = 3, 5, 7, 9; (b) d(CGCGCGT4GAAATTCGCGCGTnAATTTC), where n = 4, 6, and 8; and (c) d(TCTCTTnAAAAAAAAGAGAT5TTTTTTT), where n = 5, 7, 9, and 11. The increase in loop length of the first set of hairpins yielded decreasing TM's and constant unfolding enthalpies, resulting in an entropy driven decrease in the stability of the hairpin (ΔG° = -7.5 to -6.1 kcal/mol). In the second set, the increase in the length of the loops yielded similar TM's and slight increases in the unfolding enthalpies. This translated into more stable pseudoknots with an increasing ΔG° from -13.2 to -17.1 kcal/mol. This effect can be rationalized in terms of the increased flexibility of the pseudoknot with larger loops optimizing base-pair stacking interactions. In the last set of molecules, the increase in the length of one of the loops yielded an increase in the TM's and larger increases in the enthalpies, which stabilize the pseudoknot significantly increasing the ΔG° from -8.5 to -16.6 kcal/mol. In this set, the thymine loop is complementary to the stem of A·T base pairs and the longer loops are able to form T*A·T base triplets due to the partial folding of the thymine loop into the ceiling of the major groove of the duplex, thus yielding a net formation of 1-3 T*AT/T*AT base-triplet stacks at the middle of its stem, depending on the loop length. PMID:25584896

  18. Third generation sfermion decays into Z and W gauge bosons: Full one-loop analysis

    SciTech Connect

    Arhrib, Abdesslam; Benbrik, Rachid

    2005-05-01

    The complete one-loop radiative corrections to third-generation scalar fermions into gauge bosons Z and W{sup {+-}} is considered. We focus on f-tilde{sub 2}{yields}Zf-tilde{sub 1} and f-tilde{sub i}{yields}W{sup {+-}}f-tilde{sub j}{sup '}, f,f{sup '}=t,b. We include SUSY-QCD, QED, and full electroweak corrections. It is found that the electroweak corrections can be of the same order as the SUSY-QCD corrections. The two sets of corrections interfere destructively in some region of parameter space. The full one-loop correction can reach 10% in some supergravity scenario, while in model independent analysis like general the minimal supersymmetric standard model, the one-loop correction can reach 20% for large tan{beta} and large trilinear soft breaking terms A{sub b}.

  19. Counting primary loops in polymer gels

    PubMed Central

    Zhou, Huaxing; Woo, Jiyeon; Cok, Alexandra M.; Wang, Muzhou; Olsen, Bradley D.; Johnson, Jeremiah A.

    2012-01-01

    Much of our fundamental knowledge related to polymer networks is built on an assumption of ideal end-linked network structure. Real networks invariably possess topological imperfections that negatively affect mechanical properties; modifications of classical network theories have been developed to account for these defects. Despite decades of effort, there are no known experimental protocols for precise quantification of even the simplest topological network imperfections: primary loops. Here we present a simple conceptual framework that enables primary loop quantification in polymeric materials. We apply this framework to measure the fraction of primary loop junctions in trifunctional PEG-based hydrogels. We anticipate that the concepts described here will open new avenues of theoretical and experimental research related to polymer network structure. PMID:23132947

  20. Quantum reduced loop gravity: Semiclassical limit

    NASA Astrophysics Data System (ADS)

    Alesci, Emanuele; Cianfrani, Francesco

    2014-07-01

    We discuss the semiclassical limit of quantum reduced loop gravity, a recently proposed model to address the quantum dynamics of the early Universe. We apply loop quantum gravity (LQG) techniques in order to define the semiclassical states in the kinematical Hilbert space and we demonstrate that the expectation value of the euclidean scalar constraint coincides with the classical expression, i.e., one of the local Bianchi I dynamics. The result holds as a leading order expansion in the scale factors of the Universe and opens the way to study the subleading corrections to the semiclassical dynamics. We outline how by retaining a suitable finite coordinate length for holonomies that our effective Hamiltonian at the leading order coincides with the one expected from loop quantum cosmology (LQC). This result is an important step in fixing the correspondence between LQG and LQC.

  1. The blind loop syndrome in children.

    PubMed

    Stewart, B A; Karrer, F M; Hall, R J; Lilly, J R

    1990-08-01

    Anatomical abnormalities of the small bowel that cause intestinal stagnation result in bacterial overgrowth and a blind loop syndrome (BLS). Bacterial breakdown of bile salts and deamination of protein lead to malabsorption, steatorrhea, and fat-soluble vitamin deficiencies. Four children developed BLS as a complication of necrotizing enterocolitis, jejunal atresia, gastroschisis, and biliary atresia. BLS was suggested by abdominal pain, feculent vomiting, steatorrhea, and hypoalbuminemia. Dilated, stagnant bowel loops were demonstrated in each instance by upper gastrointestinal contrast study. Positive intestinal bacterial aspirates were confirmatory. Antibiotic treatment in two patients improved symptomatology but all children ultimately required surgery. Surgical procedures consisted of blind loop resection, intestinal plication, and catheterization of the bilioenteric conduit. All patients are now asymptomatic but one child suffers from parenteral nutrition-related cirrhosis and another requires chronic antibiotic therapy.

  2. Closed-loop approach to thermodynamics

    NASA Astrophysics Data System (ADS)

    Goupil, C.; Ouerdane, H.; Herbert, E.; Benenti, G.; D'Angelo, Y.; Lecoeur, Ph.

    2016-09-01

    We present the closed-loop approach to linear nonequilibrium thermodynamics considering a generic heat engine dissipatively connected to two temperature baths. The system is usually quite generally characterized by two parameters: the output power P and the conversion efficiency η , to which we add a third one, the working frequency ω . We establish that a detailed understanding of the effects of the dissipative coupling on the energy conversion process requires only knowing two quantities: the system's feedback factor β and its open-loop gain A0, which product A0β characterizes the interplay between the efficiency, the output power, and the operating rate of the system. By raising the abstract hermodynamic analysis to a higher level, the feedback loop approach provides a versatile and economical, hence fairly efficient, tool for the study of any conversion engine operation for which a feedback factor can be defined.

  3. Hierarchical curiosity loops and active sensing.

    PubMed

    Gordon, Goren; Ahissar, Ehud

    2012-08-01

    A curious agent acts so as to optimize its learning about itself and its environment, without external supervision. We present a model of hierarchical curiosity loops for such an autonomous active learning agent, whereby each loop selects the optimal action that maximizes the agent's learning of sensory-motor correlations. The model is based on rewarding the learner's prediction errors in an actor-critic reinforcement learning (RL) paradigm. Hierarchy is achieved by utilizing previously learned motor-sensory mapping, which enables the learning of other mappings, thus increasing the extent and diversity of knowledge and skills. We demonstrate the relevance of this architecture to active sensing using the well-studied vibrissae (whiskers) system, where rodents acquire sensory information by virtue of repeated whisker movements. We show that hierarchical curiosity loops starting from optimally learning the internal models of whisker motion and then extending to object localization result in free-air whisking and object palpation, respectively. PMID:22386787

  4. Loop Quantum Gravity and Asymptotically Flat Spaces

    NASA Astrophysics Data System (ADS)

    Arnsdorf, Matthias

    2002-12-01

    Remarkable progress has been made in the field of non-perturbative (loop) quantum gravity in the last decade or so and it is now a rigorously defined kinematical theory (c.f. [5] for a review and references). We are now at the stage where physical applications of loop quantum gravity can be studied and used to provide checks for the consistency of the quantisation programme. Equally, old fundamental problems of canonical quantum gravity such as the problem of time or the interpretation of quantum cosmology need to be reevaluated seriously. These issues can be addressed most profitably in the asymptotically flat sector of quantum gravity. Indeed, it is likely that we should obtain a quantum theory for this special case even if it is not possible to quantise full general relativity. The purpose of this summary is to advertise the extension of loop quantum gravity to this sector that was developed in [1]...

  5. Current loop signal conditioning: Practical applications

    NASA Technical Reports Server (NTRS)

    Anderson, Karl F.

    1995-01-01

    This paper describes a variety of practical application circuits based on the current loop signal conditioning paradigm. Equations defining the circuit response are also provided. The constant current loop is a fundamental signal conditioning circuit concept that can be implemented in a variety of configurations for resistance-based transducers, such as strain gages and resistance temperature detectors. The circuit features signal conditioning outputs which are unaffected by extremely large variations in lead wire resistance, direct current frequency response, and inherent linearity with respect to resistance change. Sensitivity of this circuit is double that of a Wheatstone bridge circuit. Electrical output is zero for resistance change equals zero. The same excitation and output sense wires can serve multiple transducers. More application arrangements are possible with constant current loop signal conditioning than with the Wheatstone bridge.

  6. PREFACE: Loops 11: Non-Perturbative / Background Independent Quantum Gravity

    NASA Astrophysics Data System (ADS)

    Mena Marugán, Guillermo A.; Barbero G, J. Fernando; Garay, Luis J.; Villaseñor, Eduardo J. S.; Olmedo, Javier

    2012-05-01

    Loops 11 The international conference LOOPS'11 took place in Madrid from the 23-28 May 2011. It was hosted by the Instituto de Estructura de la Materia (IEM), which belongs to the Consejo Superior de Investigaciones Cientĺficas (CSIC). Like previous editions of the LOOPS meetings, it dealt with a wealth of state-of-the-art topics on Quantum Gravity, with special emphasis on non-perturbative background-independent approaches to spacetime quantization. The main topics addressed at the conference ranged from the foundations of Quantum Gravity to its phenomenological aspects. They encompassed different approaches to Loop Quantum Gravity and Cosmology, Polymer Quantization, Quantum Field Theory, Black Holes, and discrete approaches such as Dynamical Triangulations, amongst others. In addition, this edition celebrated the 25th anniversary of the introduction of the now well-known Ashtekar variables and the Wednesday morning session was devoted to this silver jubilee. The structure of the conference was designed to reflect the current state and future prospects of research on the different topics mentioned above. Plenary lectures that provided general background and the 'big picture' took place during the mornings, and the more specialised talks were distributed in parallel sessions during the evenings. To be more specific, Monday evening was devoted to Shape Dynamics and Phenomenology Derived from Quantum Gravity in Parallel Session A, and to Covariant Loop Quantum Gravity and Spin foams in Parallel Session B. Tuesday's three Parallel Sessions dealt with Black Hole Physics and Dynamical Triangulations (Session A), the continuation of Monday's session on Covariant Loop Quantum Gravity and Spin foams (Session B) and Foundations of Quantum Gravity (Session C). Finally, Thursday and Friday evenings were devoted to Loop Quantum Cosmology (Session A) and to Hamiltonian Loop Quantum Gravity (Session B). The result of the conference was very satisfactory and enlightening. Not

  7. Spatial and temporal variation of the Fe XIV line (530,3 nm) along coronal loops

    NASA Astrophysics Data System (ADS)

    Borgazzi, A.; Costa, A.; Stenborg, G.

    We report on a method to quantify intensity variations along coronal loops and corresponding results. The presentation is particularly aimed to analyze the dynamics of localized small scale coronal (post-flaring) loops observed with the MICA (Mirror Coronagraph for Argentina) telescope in the green coronal line at 530.3 nm on October 6th, 2001. The temporal cadence was of about one image per minute. This work continues the analysis started in a previous paper (Costa and Stenborg, 2004, Solar Phys., in press) where the authors introduce a procedure to measure intensity variations, both in space and time, along the structure of a coronal loop, reporting a case study on October 1st, 2001. Comparison of both events is given. Significant coronal intensity variability was detected in compact loop systems suggesting different types of plasma flow. In particular, some of them show a brightening at the top, which moves down along the axis of the loop with mean velocities that suggest scenarios of high-speed plasma flows. The results obtained allow the flow inside coronal structures to be characterized and theoretical descriptions related to different physical scenarios to be compared.

  8. Quasi-periodic processes in the flare loop generated by sudden temperature enhancements at loop footpoints

    NASA Astrophysics Data System (ADS)

    Karlický, M.; Jelínek, P.

    2016-05-01

    Aims: During the impulsive flare phase, the plasma at the flare loop footpoints is rapidly heated by particle beams. In the present paper, we study processes that occur after this sudden heating in a two-dimensional magnetic loop. Methods: We adopt a 2D magnetohydrodynamic (MHD) model, in which we solve a full set of the ideal time-dependent MHD equations by means of the FLASH code, using the adaptive mesh refinement (AMR) method. Periods in the processes are estimated by the wavelet analysis technique. Results: We consider a model of the solar atmosphere with a symmetric magnetic loop. The length of this loop in the corona is approximately 21.5 Mm. At both loop footpoints, at the transition region, we initiate the Gaussian temperature (pressure) perturbation with the maximum temperature 14, 7, or 3.5 times higher than the unperturbed temperature. In the corona, the perturbations produce supersonic blast shocks with the Mach number of about 1.1, but well below Alfvén velocities. We consider cases with the same perturbations at both footpoints (symmetric case) and one with different perturbations (asymmetric case). In the symmetric case, the shocks move along both loop legs upwards to the top of the loop, where they interact and form a transient compressed region. Then they continue in their motion to the transition region at the opposite side of the loop, where they are reflected upwards, and so on. At the top of the loop, the shock appears periodically with the period of about 170 s. In the loop legs during this period, a double peak of the plasma parameters, which is connected with two arrivals of shocks, is detected: firstly, when the shock moves up and then when the shock, propagating from the opposite loop leg, moves down. Increasing the distance of the detection point in the loop leg from the top of the loop, the time interval between these shock arrivals increases. Thus, at these detection points, the processes with shorter periods can be detected. After

  9. Mapping nested loop algorithms into multidimensional systolic arrays

    SciTech Connect

    Lee, P.Z. ); Kedem, Z.M. )

    1990-01-01

    This paper is concerned with transforming depth p-nested for loop algorithms into q-dimensional systolic VLSI arrays where 1 {le} q {le} p {minus} 1. Previously there existed complete characterizations of correct transformations only for the cases when q = p {minus} 1 or q = 1. The authors fill in this gap by giving formal necessary and sufficient conditions for correct transformation of a p-nested loop algorithm into a q-dimensional systolic array for any q, 1 {le} q {le} p {minus} 1. They also provide practical methods to derive optimal or suboptimal systolic array implementations. They apply the techniques developed by us to the automatic design of special purpose and programmable systolic arrays. The author's results also contribute towards automatic compilation onto more general purpose programmable arrays. Synthesis of linear and planar systolic array implementations for a three-dimensional cube-graph algorithm and a reindexed Warshall-Floyd pathfinding algorithm is used to illustrate our method.

  10. Group field theories for all loop quantum gravity

    NASA Astrophysics Data System (ADS)

    Oriti, Daniele; Ryan, James P.; Thürigen, Johannes

    2015-02-01

    Group field theories represent a second quantized reformulation of the loop quantum gravity state space and a completion of the spin foam formalism. States of the canonical theory, in the traditional continuum setting, have support on graphs of arbitrary valence. On the other hand, group field theories have usually been defined in a simplicial context, thus dealing with a restricted set of graphs. In this paper, we generalize the combinatorics of group field theories to cover all the loop quantum gravity state space. As an explicit example, we describe the group field theory formulation of the KKL spin foam model, as well as a particular modified version. We show that the use of tensor model tools allows for the most effective construction. In order to clarify the mathematical basis of our construction and of the formalisms with which we deal, we also give an exhaustive description of the combinatorial structures entering spin foam models and group field theories, both at the level of the boundary states and of the quantum amplitudes.

  11. One-loop corrections from higher dimensional tree amplitudes

    NASA Astrophysics Data System (ADS)

    Cachazo, Freddy; He, Song; Yuan, Ellis Ye

    2016-08-01

    We show how one-loop corrections to scattering amplitudes of scalars and gauge bosons can be obtained from tree amplitudes in one higher dimension. Starting with a complete tree-level scattering amplitude of n + 2 particles in five dimensions, one assumes that two of them cannot be "detected" and therefore an integration over their LIPS is carried out. The resulting object, function of the remaining n particles, is taken to be four-dimensional by restricting the corresponding momenta. We perform this procedure in the context of the tree-level CHY formulation of amplitudes. The scattering equations obtained in the procedure coincide with those derived by Geyer et al. from ambitwistor constructions and recently studied by two of the authors for bi-adjoint scalars. They have two sectors of solutions: regular and singular. We prove that the contribution from regular solutions generically gives rise to unphysical poles. However, using a BCFW argument we prove that the unphysical contributions are always homogeneous functions of the loop momentum and can be discarded. We also show that the contribution from singular solutions turns out to be homogeneous as well.

  12. Supervisory control of a pilot-scale cooling loop

    SciTech Connect

    Kris Villez; Venkat Venkatasubramanian; Humberto Garcia

    2011-08-01

    We combine a previously developed strategy for Fault Detection and Identification (FDI) with a supervisory controller in closed loop. The combined method is applied to a model of a pilot-scale cooling loop of a nuclear plant, which includes Kalman filters and a model-based predictive controller as part of normal operation. The system has two valves available for flow control meaning that some redundancy is available. The FDI method is based on likelihood ratios for different fault scenarios which in turn are derived from the application of the Kalman filter. A previously introduced extension of the FDI method is used here to enable detection and identification of non-linear faults like stuck valve problems and proper accounting of the time of fault introduction. The supervisory control system is designed so to take different kinds of actions depending on the status of the fault diagnosis task and on the type of identified fault once diagnosis is complete. Some faults, like sensor bias and drift, are parametric in nature and can be adjusted without need for reconfiguration of the regulatory control system. Other faults, like a stuck valve problem, require reconfiguration of the regulatory control system. The whole strategy is demonstrated for several scenarios.

  13. MHD Modelling of Coronal Loops: Injection of High-Speed Chromospheric Flows

    NASA Technical Reports Server (NTRS)

    Petralia, A.; Reale, F.; Orlando, S.; Klimchuk, J. A.

    2014-01-01

    Context. Observations reveal a correspondence between chromospheric type II spicules and bright upward-moving fronts in the corona observed in the extreme-ultraviolet (EUV) band. However, theoretical considerations suggest that these flows are probably not the main source of heating in coronal magnetic loops. Aims. We investigate the propagation of high-speed chromospheric flows into coronal magnetic flux tubes and the possible production of emission in the EUV band. Methods. We simulated the propagation of a dense 104 K chromospheric jet upward along a coronal loop by means of a 2D cylindrical MHD model that includes gravity, radiative losses, thermal conduction, and magnetic induction. The jet propagates in a complete atmosphere including the chromosphere and a tenuous cool (approximately 0.8 MK) corona, linked through a steep transition region. In our reference model, the jet initial speed is 70 km per second, its initial density is 10(exp 11) per cubic centimeter, and the ambient uniform magnetic field is 10 G. We also explored other values of jet speed and density in 1D and different magnetic field values in 2D, as well as the jet propagation in a hotter (approximately 1.5 MK) background loop. Results. While the initial speed of the jet does not allow it to reach the loop apex, a hot shock-front develops ahead of it and travels to the other extreme of the loop. The shock front compresses the coronal plasma and heats it to about 10(exp 6) K. As a result, a bright moving front becomes visible in the 171 Angstrom channel of the SDO/AIA mission. This result generally applies to all the other explored cases, except for the propagation in the hotter loop. Conclusions. For a cool, low-density initial coronal loop, the post-shock plasma ahead of upward chromospheric flows might explain at least part of the observed correspondence between type II spicules and EUV emission excess.

  14. Transcription on lampbrush chromosome loops in the absence of U2 snRNA.

    PubMed Central

    Tsvetkov, A; Jantsch, M; Wu, Z; Murphy, C; Gall, J G

    1992-01-01

    The five small nuclear RNAs (snRNAs) involved in splicing occur on the loops of amphibian lampbrush chromosomes and in hundreds to thousands of extrachromosomal granules called B snurposomes. To assess the role of these snRNAs during transcription and to explore possible relationships between the loops and B snurposomes, we injected single-stranded antisense oligodeoxynucleotides (oligos) against U1 and U2 snRNA into toad and newt oocytes. As shown before, antisense U1 and U2 oligos caused truncation of U1 and complete destruction of U2 snRNAs, respectively. However, injection of any oligo, regardless of sequence, brought on dramatic cytological changes, including shortening of the chromosomes and retraction of the lateral loops, with concomitant shutdown of polymerase II transcription, as well as disappearance of some or all of the B snurposomes. When injected oocytes were incubated for 12 h or longer in physiological saline, these changes were reversible; that is, the chromosomes lengthened, transcription (detected by 3H-UTP incorporation) resumed on newly extended lateral loops, and B snurposomes reappeared. In situ hybridization showed that loops and B snurposomes had negligible amounts of U2 snRNA after recovery from injection of the anti-U2 oligo, whereas these structures had normal levels of U2 snRNA after recovery from a control oligo. Thus, the morphological integrity of B snurposomes and lampbrush chromosome loops is not dependent on the presence of U2 snRNA. Because transcription occurs in the absence of U2 snRNA, we conclude that splicing is not required for transcription on lampbrush chromosome loops. Images PMID:1627829

  15. Pressure structure of solar coronal loops

    NASA Technical Reports Server (NTRS)

    Krishan, V.

    1987-01-01

    The steady state pressure structure of a coronal loop is discussed in terms of the MHD global invariants of an incompressible plasma. The steady state is represented by the superposition of two Chandrasekhar-Kendall functions corresponding to (n=m=0) and (n=m=1) modes. The relative contribution of the two modes (epsilon) is found to depend on the surface pressure of the coronal loop which is also the pressure of the external medium. The mixed mode state does not exist for high values of the external pressure because epsilon becomes complex.

  16. Similarity Metrics for Closed Loop Dynamic Systems

    NASA Technical Reports Server (NTRS)

    Whorton, Mark S.; Yang, Lee C.; Bedrossian, Naz; Hall, Robert A.

    2008-01-01

    To what extent and in what ways can two closed-loop dynamic systems be said to be "similar?" This question arises in a wide range of dynamic systems modeling and control system design applications. For example, bounds on error models are fundamental to the controller optimization with modern control design methods. Metrics such as the structured singular value are direct measures of the degree to which properties such as stability or performance are maintained in the presence of specified uncertainties or variations in the plant model. Similarly, controls-related areas such as system identification, model reduction, and experimental model validation employ measures of similarity between multiple realizations of a dynamic system. Each area has its tools and approaches, with each tool more or less suited for one application or the other. Similarity in the context of closed-loop model validation via flight test is subtly different from error measures in the typical controls oriented application. Whereas similarity in a robust control context relates to plant variation and the attendant affect on stability and performance, in this context similarity metrics are sought that assess the relevance of a dynamic system test for the purpose of validating the stability and performance of a "similar" dynamic system. Similarity in the context of system identification is much more relevant than are robust control analogies in that errors between one dynamic system (the test article) and another (the nominal "design" model) are sought for the purpose of bounding the validity of a model for control design and analysis. Yet system identification typically involves open-loop plant models which are independent of the control system (with the exception of limited developments in closed-loop system identification which is nonetheless focused on obtaining open-loop plant models from closed-loop data). Moreover the objectives of system identification are not the same as a flight test and

  17. Slipping magnetic reconnection in coronal loops.

    PubMed

    Aulanier, Guillaume; Golub, Leon; Deluca, Edward E; Cirtain, Jonathan W; Kano, Ryouhei; Lundquist, Loraine L; Narukage, Noriyuki; Sakao, Taro; Weber, Mark A

    2007-12-01

    Magnetic reconnection of solar coronal loops is the main process that causes solar flares and possibly coronal heating. In the standard model, magnetic field lines break and reconnect instantaneously at places where the field mapping is discontinuous. However, another mode may operate where the magnetic field mapping is continuous but shows steep gradients: The field lines may slip across each other. Soft x-ray observations of fast bidirectional motions of coronal loops, observed by the Hinode spacecraft, support the existence of this slipping magnetic reconnection regime in the Sun's corona. This basic process should be considered when interpreting reconnection, both on the Sun and in laboratory-based plasma experiments. PMID:18063789

  18. Coronal loop formation resulting from photospheric convection

    NASA Technical Reports Server (NTRS)

    Hoven, G. Van; Mok, Y.; Mikic, Z.

    1995-01-01

    We have demonstrated the dynamic formation of coronal magnetic loops in three dimensions as a result of horizontal vortex-like convection on the photosphere. Localized plasma motions twist bipolar magnetic field lines which are tied to the dense photosphere by high electrical conductivity. The twists propagate into the corona along the field and create a narrow quasi-toroidal region where the field lines interwind. At the same time, this tubeline region rises in altitude, expands in cross section, and distorts into a slight S shape before settling into an equilibrium state. The MHD stability of such line-tied magnetic loop structures is directly exhibited by this dynamic simulation.

  19. Accounting for elastic bodies in multibody loops

    NASA Astrophysics Data System (ADS)

    Hiller, Manfred; Sokol, Peter

    A technique for modeling multibody systems with closed kinematic loops containing elastic bodies is developed analytically. The elastic body is treated as a beam element, and its linear-elastic deformation is discretized using ansatz functions. The free elastic body is then integrated into the multibody loop with the help of coupling equations, as described by Woernle (1988), and the equations of motion are obtained in minimal form via the principle of D'Alembert. The applicability of the present approach to problems in large space structures and robotics is indicated.

  20. A keyboard control method for loop measurement

    SciTech Connect

    Gao, Z.W.

    1994-12-31

    This paper describes a keyboard control mode based on the DEC VAX computer. The VAX Keyboard code can be found under running of a program was developed. During the loop measurement or multitask operation, it ables to be distinguished from a keyboard code to stop current operation or transfer to another operation while previous information can be held. The combining of this mode, the author successfully used one key control loop measurement for test Dual Input Memory module which is used in a rearrange Energy Trigger system for LEP 8 Bunch operation.

  1. Spontaneous fluxoid formation in superconducting loops

    SciTech Connect

    Monaco, R.; Mygind, J.; Rivers, R. J.; Koshelets, V. P.

    2009-11-01

    We report on the experimental verification of the Zurek-Kibble scenario in an isolated superconducting ring over a wide parameter range. The probability of creating a single flux quantum spontaneously during the fast normal-superconducting phase transition of a wide Nb loop clearly follows a scaling relation on the quenching time {tau}{sub Q}, as one would expect if the transition took place as fast as causality permits. However, the observed Zurek-Kibble scaling exponent {sigma}=0.62{+-}0.15 is two times larger than anticipated for large loops. Assuming Gaussian winding number densities we show that this doubling is well founded for small annuli.

  2. Temperature Oscillations in Loop Heat Pipe Operation

    NASA Technical Reports Server (NTRS)

    Ku, Jentung; Ottenstein, Laura; Kobel, Mark; Rogers, Paul; Kaya, Tarik; Paquin, Krista C. (Technical Monitor)

    2000-01-01

    Loop heat pipes (LHPs) are versatile two-phase heat transfer devices that have gained increasing acceptance for space and terrestrial applications. The operating temperature of an LHP is a function of its operating conditions. The LHP usually reaches a steady operating temperature for a given heat load and sink temperature. The operating temperature will change when the heat load and/or the sink temperature changes, but eventually reaches another steady state in most cases. Under certain conditions, however, the loop operating temperature never really reaches a true steady state, but instead becomes oscillatory. This paper discusses the temperature oscillation phenomenon using test data from a miniature LHP.

  3. Completely conservative locally barotropic difference schemes for gas dynamics and magnetohydrodynamics

    SciTech Connect

    Goloviznin, V.M.; Samarskaya, E.A.

    1987-03-01

    The authors propose completely conservative locally barotropic MHD difference schemes in Lagrangian variables for the cases of planar and axial symmetry, along with completely conservative locally barotropic gasdynamic difference schemes in application to computations of spherically symmetrical flows.

  4. High School Completion Longitudinal Study

    ERIC Educational Resources Information Center

    Alberta Education, 2009

    2009-01-01

    While Alberta enjoys proven high, world-class results in student achievement, raising high school completion rates is one of the top priorities in improving the provincial education system. The 2011-12 targeted high school completion rate is 82% five years after entering Grade 10--a 2.5% increase from the current average rate of 79.5%. The purpose…

  5. Latino College Completion: North Dakota

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  6. Latino College Completion: South Dakota

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  7. Latino College Completion: United States

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  8. Latino College Completion: West Virginia

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  9. Latino College Completion: Rhode Island

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  10. Latino College Completion: New York

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  11. Latino College Completion: New Mexico

    ERIC Educational Resources Information Center

    Excelencia in Education (NJ1), 2012

    2012-01-01

    In 2009, Excelencia in Education launched the Ensuring America's Future initiative to inform, organize, and engage leaders in a tactical plan to increase Latino college completion. An executive summary of Latino College Completion in 50 states synthesizes information on 50 state factsheets and builds on the national benchmarking guide. Each…

  12. Strictly homogeneous laterally complete modules

    NASA Astrophysics Data System (ADS)

    Chilin, V. I.; Karimov, J. A.

    2016-03-01

    Let A be a laterally complete commutative regular algebra and X be a laterally complete A-module. In this paper we introduce a notion of homogeneous and strictly homogeneous A-modules. It is proved that any homogeneous A-module is strictly homogeneous A-module, if the Boolean algebra of all idempotents in A is multi-σ-finite.

  13. Pure-state informationally complete and 'really' complete measurements

    SciTech Connect

    Finkelstein, J.

    2004-11-01

    I construct a positive-operator-valued measure (POVM) which has 2d rank-1 elements and which is informationally complete for generic pure states in d dimensions, thus confirming a conjecture made by Flammia, Silberfarb, and Caves (e-print quant-ph/0404137). I show that if a rank-1 POVM is required to be informationally complete for all pure states in d dimensions, it must have at least 3d-2 elements. I also show that, in a POVM which is informationally complete for all pure states in d dimensions, for any vector there must be at least 2d-1 POVM elements which do not annihilate that vector.

  14. Complete mitochondrial genome sequence of Aoluguya reindeer (Rangifer tarandus).

    PubMed

    Ju, Yan; Liu, Huamiao; Rong, Min; Yang, Yifeng; Wei, Haijun; Shao, Yuanchen; Chen, Xiumin; Xing, Xiumei

    2016-05-01

    The complete mitochondria genome of the reindeer, Rangifer tarandus, was determined by accurate polymerase chain reaction. The entire genome is 16,357 bp in length and contains 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and a D-loop region, all of which are arranged in a typical vertebrate manner. The overall base composition of the reindeer's mitochondrial genome is 33.7% of A, 23.1% of C, 30.1% of T and 13.2%of G. A termination associated sequence and several conserved central sequence block domains were discovered within the control region.

  15. Complete mitochondrial genome sequence of Aoluguya reindeer (Rangifer tarandus).

    PubMed

    Ju, Yan; Liu, Huamiao; Rong, Min; Yang, Yifeng; Wei, Haijun; Shao, Yuanchen; Chen, Xiumin; Xing, Xiumei

    2016-05-01

    The complete mitochondria genome of the reindeer, Rangifer tarandus, was determined by accurate polymerase chain reaction. The entire genome is 16,357 bp in length and contains 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and a D-loop region, all of which are arranged in a typical vertebrate manner. The overall base composition of the reindeer's mitochondrial genome is 33.7% of A, 23.1% of C, 30.1% of T and 13.2%of G. A termination associated sequence and several conserved central sequence block domains were discovered within the control region. PMID:25469816

  16. Coupling of twist and writhe in short DNA loops

    NASA Astrophysics Data System (ADS)

    Medalion, Shlomi; Rappaport, Shay M.; Rabin, Yitzhak

    2010-01-01

    While bending and twist can be treated as independent degrees of freedom for linear DNA molecules, the loop closure constraint introduces a coupling between these variables in circular DNA. We performed Monte Carlo simulations of wormlike rods with both bending and twist rigidity in order to study the coupling between the writhe and twist distributions for various DNA lengths. We find that for sufficiently short DNA, the writhe distribution differs from that of a model with bending energy only. We show that the factorization approximation introduced by previous researchers coincides, within numerical accuracy, with our simulation results, and conclude that the closure constraint is fully accounted for by the White-Fuller relation. Experimental tests of our results for short DNA plasmids are proposed.

  17. Closed loop supply chain network design with fuzzy tactical decisions

    NASA Astrophysics Data System (ADS)

    Sherafati, Mahtab; Bashiri, Mahdi

    2016-01-01

    One of the most strategic and the most significant decisions in supply chain management is reconfiguration of the structure and design of the supply chain network. In this paper, a closed loop supply chain network design model is presented to select the best tactical and strategic decision levels simultaneously considering the appropriate transportation mode in activated links. The strategic decisions are made for a long term; thus, it is more satisfactory and more appropriate when the decision variables are considered uncertain and fuzzy, because it is more flexible and near to the real world. This paper is the first research which considers fuzzy decision variables in the supply chain network design model. Moreover, in this study a new fuzzy optimization approach is proposed to solve a supply chain network design problem with fuzzy tactical decision variables. Finally, the proposed approach and model are verified using several numerical examples. The comparison of the results with other existing approaches confirms efficiency of the proposed approach. Moreover the results confirms that by considering the vagueness of tactical decisions some properties of the supply chain network will be improved.

  18. SWI/SNF- and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes.

    PubMed

    Liu, Ning; Peterson, Craig L; Hayes, Jeffrey J

    2011-10-01

    The multisubunit SWI/SNF and RSC complexes utilize energy derived from ATP hydrolysis to mobilize nucleosomes and render the DNA accessible for various nuclear processes. Here we test the idea that remodeling involves intermediates with mobile DNA bulges or loops within the nucleosome by cross-linking the H2A N- or C-terminal tails together to generate protein "loops" that constrict separation of the DNA from the histone surface. Analyses indicate that this intranucleosomal cross-linking causes little or no change in remodeling-dependent exposure of DNA sequences within the nucleosome to restriction enzymes. However, cross-linking inhibits nucleosome mobilization and blocks complete movement of nucleosomes to extreme end positions on the DNA fragments. These results are consistent with evidence that nucleosome remodeling involves intermediates with DNA loops on the nucleosome surface but indicate that such loops do not freely diffuse about the surface of the histone octamer. We propose a threading model for movement of DNA loops around the perimeter of the nucleosome core.

  19. Modeling the dynamically tuned gyroscope in support of high-bandwidth capture loop design

    NASA Astrophysics Data System (ADS)

    May, David

    1999-07-01

    The 'dynamic tuning' of a dynamically tuned gyroscope (DTG) refers to a clever gimbal configuration that balances the torques from the support flexures with dynamic spring torques created by gimbal 'flutter' while the gyro rotor spins. This configuration allows the gyro rotor to spin to a 'free' rotor in two axes. The dynamics of a free rotor are widely known and easily summarized in the right-hand rule for gyro precession and a simple second order system equation with a natural frequency, known as the nutation frequency, as a function of the angular momentum and transverse inertia. Not much more is needed for design of capture loops for the DTG, as long as the bandwidth of the capture loop does not approach the nutation frequency of the gyro. However, the complete dynamical equations of motion of the DTG include other parameters such as windage, mistuning and friction torques that must be considered when designing capture loops with higher than nominal bandwidths. These equations, which are well known and widely published, are discussed in regard to capture loop design. The application of active nutation damping in the capture loop compensation is outlined. Typically results are presented.

  20. The 2-loop matter power spectrum and the IR-safe integrand

    SciTech Connect

    Carrasco, John Joseph M.; Foreman, Simon; Green, Daniel; Senatore, Leonardo E-mail: sfore@stanford.edu E-mail: senatore@stanford.edu

    2014-07-01

    Large scale structure surveys are likely the next leading probe of cosmological information. It is therefore crucial to reliably predict their observables. The Effective Field Theory of Large Scale Structures (EFTofLSS) provides a manifestly convergent perturbation theory for the weakly non-linear regime, where dark matter correlation functions are computed in an expansion of the wavenumber k over the wavenumber associated to the non-linear scale k{sub NL}. To push the predictions to higher wavenumbers, it is necessary to compute the 2-loop matter power spectrum. For equal-time correlators, exactly as with standard perturturbation theory, there are IR divergences present in each diagram that cancel completely in the final result. We develop a method by which all 2-loop diagrams are computed as one integral, with an integrand that is manifestly free of any IR divergences. This allows us to compute the 2-loop power spectra in a reliable way that is much less numerically challenging than standard techniques. We apply our method to scaling universes where the linear power spectrum is a single power law of k, and where IR divergences can particularly easily interfere with accurate evaluation of loop corrections if not handled carefully. We show that our results are independent of IR cutoff and, after renormalization, of the UV cutoff, and comment how the method presented here naturally generalizes to higher loops.

  1. Run-time parallelization and scheduling of loops

    NASA Technical Reports Server (NTRS)

    Saltz, Joel H.; Mirchandaney, Ravi; Crowley, Kay

    1990-01-01

    Run time methods are studied to automatically parallelize and schedule iterations of a do loop in certain cases, where compile-time information is inadequate. The methods presented involve execution time preprocessing of the loop. At compile-time, these methods set up the framework for performing a loop dependency analysis. At run time, wave fronts of concurrently executable loop iterations are identified. Using this wavefront information, loop iterations are reordered for increased parallelism. Symbolic transformation rules are used to produce: inspector procedures that perform execution time preprocessing and executors or transformed versions of source code loop structures. These transformed loop structures carry out the calculations planned in the inspector procedures. Performance results are presented from experiments conducted on the Encore Multimax. These results illustrate that run time reordering of loop indices can have a significant impact on performance. Furthermore, the overheads associated with this type of reordering are amortized when the loop is executed several times with the same dependency structure.

  2. Radiation Enhanced Absorption of Frank Loops by Nanovoids in Cu

    NASA Astrophysics Data System (ADS)

    Chen, Y.; Zhang, X.; Wang, J.

    2016-01-01

    Neutron and heavy ion irradiations generally induce voids in metallic materials, and continuous radiations typically result in void swelling and mechanical failure of the irradiated materials. Recent experiments showed that nanovoids in nanotwinned copper could act as sinks for radiation-induced Frank loops, significantly mitigating radiation damage. In this paper, we report on structural evolution of Frank loops under cascades and address the role of nanovoids in absorbing Frank loops in detail by using molecular dynamics simulations. Results show that a stand-alone Frank loop is stable under cascades. When Frank loops are adjacent to nanovoids, the diffusion of a group of atoms from the loop into nanovoids is accomplished via the formation and propagation of dislocation loops. The loop-nanovoid interactions result in the shrinkage of the nanovoids and the Frank loops.

  3. Modulation of DNA loop lifetimes by the free energy of loop formation

    PubMed Central

    Chen, Yi-Ju; Johnson, Stephanie; Mulligan, Peter; Spakowitz, Andrew J.; Phillips, Rob

    2014-01-01

    Storage and retrieval of the genetic information in cells is a dynamic process that requires the DNA to undergo dramatic structural rearrangements. DNA looping is a prominent example of such a structural rearrangement that is essential for transcriptional regulation in both prokaryotes and eukaryotes, and the speed of such regulations affects the fitness of individuals. Here, we examine the in vitro looping dynamics of the classic Lac repressor gene-regulatory motif. We show that both loop association and loop dissociation at the DNA-repressor junctions depend on the elastic deformation of the DNA and protein, and that both looping and unlooping rates approximately scale with the looping J factor, which reflects the system’s deformation free energy. We explain this observation by transition state theory and model the DNA–protein complex as an effective worm-like chain with twist. We introduce a finite protein–DNA binding interaction length, in competition with the characteristic DNA deformation length scale, as the physical origin of the previously unidentified loop dissociation dynamics observed here, and discuss the robustness of this behavior to perturbations in several polymer parameters. PMID:25411314

  4. Structure and Dynamics of Extracellular Loops in Human Aquaporin-1 from Solid-State NMR and Molecular Dynamics.

    PubMed

    Wang, Shenlin; Ing, Christopher; Emami, Sanaz; Jiang, Yunjiang; Liang, Hongjun; Pomès, Régis; Brown, Leonid S; Ladizhansky, Vladimir

    2016-09-22

    Multiple moderate-resolution crystal structures of human aquaporin-1 have provided a foundation for understanding the molecular mechanism of selective water translocation in human cells. To gain insight into the interfacial structure and dynamics of human aquaporin-1 in a lipid environment, we performed nuclear magnetic resonance (NMR) spectroscopy and molecular dynamics simulations. Using magic angle spinning solid-state NMR, we report a near complete resonance assignment of the human aquaporin-1. Chemical shift analysis of the secondary structure identified pronounced deviations from crystallographic structures in extracellular loops A and C, including the cis Y37-P38 bond in loop A, as well as ordering and immobilization of loop C. Site-specific H/D exchange measurements identify a number of protected nitrogen-bearing side chains and backbone amide groups, involved in stabilizing the loops. A combination of molecular dynamics simulations with NMR-derived restraints and filtering based on solvent accessibility allowed for the determination of a structural model of extracellular loops largely consistent with NMR results. The simulations reveal loop stabilizing interactions that alter the extracellular surface of human AQP1, with possible implications for water transport regulation through the channel. Modulation of water permeation may occur as a result of rearrangement of side chains from loop C in the extracellular vestibule of hAQP1, affecting the aromatic arginine selectivity filter. PMID:27583975

  5. Closed loop computer control for an automatic transmission

    DOEpatents

    Patil, Prabhakar B.

    1989-01-01

    In an automotive vehicle having an automatic transmission that driveably connects a power source to the driving wheels, a method to control the application of hydraulic pressure to a clutch, whose engagement produces an upshift and whose disengagement produces a downshift, the speed of the power source, and the output torque of the transmission. The transmission output shaft torque and the power source speed are the controlled variables. The commanded power source torque and commanded hydraulic pressure supplied to the clutch are the control variables. A mathematical model is formulated that describes the kinematics and dynamics of the powertrain before, during and after a gear shift. The model represents the operating characteristics of each component and the structural arrangement of the components within the transmission being controlled. Next, a close loop feedback control is developed to determine the proper control law or compensation strategy to achieve an acceptably smooth gear ratio change, one in which the output torque disturbance is kept to a minimum and the duration of the shift is minimized. Then a computer algorithm simulating the shift dynamics employing the mathematical model is used to study the effects of changes in the values of the parameters established from a closed loop control of the clutch hydraulic and the power source torque on the shift quality. This computer simulation is used also to establish possible shift control strategies. The shift strategies determined from the prior step are reduced to an algorithm executed by a computer to control the operation of the power source and the transmission.

  6. Fuzzy logic based intelligent control of a variable speed cage machine wind generation system

    SciTech Connect

    Simoes, M.G.; Bose, B.K.; Spiegel, R.J.

    1997-01-01

    The paper describes a variable speed wind generation system where fuzzy logic principles are used for efficiency optimization and performance enhancement control. A squirrel cage induction generator feeds the power to a double-sided pulse width modulated converter system which pumps power to a utility grid or can supply to an autonomous system. The generation system has fuzzy logic control with vector control in the inner loops. A fuzzy controller tracks the generator speed with the wind velocity to extract the maximum power. A second fuzzy controller programs the machine flux for light load efficiency improvement, and a third fuzzy controller gives robust speed control against wind gust and turbine oscillatory torque. The complete control system has been developed, analyzed, and validated by simulation study. Performances have then been evaluated in detail.

  7. PHOTOSPHERIC PROPERTIES OF WARM EUV LOOPS AND HOT X-RAY LOOPS

    SciTech Connect

    Kano, R.; Ueda, K.; Tsuneta, S.

    2014-02-20

    We investigate the photospheric properties (vector magnetic fields and horizontal velocity) of a well-developed active region, NOAA AR 10978, using the Hinode Solar Optical Telescope specifically to determine what gives rise to the temperature difference between ''warm loops'' (1-2 MK), which are coronal loops observed in EUV wavelengths, and ''hot loops'' (>3 MK), coronal loops observed in X-rays. We found that outside sunspots, the magnetic filling factor in the solar network varies with location and is anti-correlated with the horizontal random velocity. If we accept that the observed magnetic features consist of unresolved magnetic flux tubes, this anti-correlation can be explained by the ensemble average of flux-tube motion driven by small-scale random flows. The observed data are consistent with a flux tube width of ∼77 km and horizontal flow at ∼2.6 km s{sup –1} with a spatial scale of ∼120 km. We also found that outside sunspots, there is no significant difference between warm and hot loops either in the magnetic properties (except for the inclination) or in the horizontal random velocity at their footpoints, which are identified with the Hinode X-Ray Telescope and the Transition Region and Coronal Explorer. The energy flux injected into the coronal loops by the observed photospheric motion of the magnetic fields is estimated to be 2 × 10{sup 6} erg s{sup –1} cm{sup –2}, which is the same for both warm and hot loops. This suggests that coronal properties (e.g., loop length) play a more important role in giving rise to temperature differences of active-region coronal loops than photospheric parameters.

  8. Closing the loop of the soil water retention curve

    USGS Publications Warehouse

    Lu, Ning; Alsherif, N; Wayllace, Alexandra; Godt, Jonathan W.

    2015-01-01

    The authors, to their knowledge for the first time, produced two complete principal soil water retention curves (SWRCs) under both positive and negative matric suction regimes. An innovative testing technique combining the transient water release and imbibition method (TRIM) and constant flow method (CFM) was used to identify the principal paths of SWRC in the positive pore-water pressure regime under unsaturated conditions. A negative matric suction of 9.8 kPa is needed to reach full saturation or close the loop of the SWRC for a silty soil. This work pushes the understanding of the interaction of soil and water into new territory by quantifying the boundaries of the SWRC over the entire suction domain, including both wetting and drying conditions that are relevant to field conditions such as slope wetting under heavy rainfall or rapid groundwater table rise in earthen dams or levees.

  9. Strange hadronic loops of the proton: A quark model calculation

    SciTech Connect

    Paul Geiger; Nathan Isgur

    1996-10-01

    Nontrivial q{anti q} sea effects have their origin in the low-Q{sup 2} dynamics of strong QCD. The authors present here a quark model calculation of the contribution of s{anti s} pairs arising from a complete set of OZI-allowed strong Y{sup *}K{sup *} hadronic loops to the net spin of the proton, to its charge radius, and to its magnetic moment. The calculation is performed in an ``unquenched quark model'' which has been shown to preserve the spectroscopic successes of the naive quark model and to respect the OZI rule. They speculate that an extension of the calculation to the nonstrange sea will show that most of the ``missing spin'' of the proton is in orbital angular momenta.

  10. Inflation with the Starobinsky potential in loop quantum cosmology

    NASA Astrophysics Data System (ADS)

    Bonga, Béatrice; Gupt, Brajesh

    2016-06-01

    A self-consistent pre-inflationary extension of the inflationary scenario with the Starobinsky potential, favored by Planck data, is studied using techniques from loop quantum cosmology (LQC). The results are compared with the quadratic potential previously studied. Planck scale completion of the inflationary paradigm and observable signatures of LQC are found to be robust under the change of the inflation potential. The entire evolution, from the quantum bounce all the way to the end of inflation, is compatible with observations. Occurrence of desired slow-roll phase is almost inevitable and natural initial conditions exist for both the background and perturbations for which the resulting power spectrum agrees with recent observations. There exist initial data for which the quantum gravitational corrections to the power spectrum are potentially observable.

  11. Advanced Hybrid Spacesuit Concept Featuring Integrated Open Loop and Closed Loop Ventilation Systems

    NASA Technical Reports Server (NTRS)

    Daniel, Brian A.; Fitzpatrick, Garret R.; Gohmert, Dustin M.; Ybarra, Rick M.; Dub, Mark O.

    2013-01-01

    A document discusses the design and prototype of an advanced spacesuit concept that integrates the capability to function seamlessly with multiple ventilation system approaches. Traditionally, spacesuits are designed to operate both dependently and independently of a host vehicle environment control and life support system (ECLSS). Spacesuits that operate independent of vehicle-provided ECLSS services must do so with equipment selfcontained within or on the spacesuit. Suits that are dependent on vehicle-provided consumables must remain physically connected to and integrated with the vehicle to operate properly. This innovation is the design and prototype of a hybrid spacesuit approach that configures the spacesuit to seamlessly interface and integrate with either type of vehicular systems, while still maintaining the ability to function completely independent of the vehicle. An existing Advanced Crew Escape Suit (ACES) was utilized as the platform from which to develop the innovation. The ACES was retrofitted with selected components and one-off items to achieve the objective. The ventilation system concept was developed and prototyped/retrofitted to an existing ACES. Components were selected to provide suit connectors, hoses/umbilicals, internal breathing system ducting/ conduits, etc. The concept utilizes a lowpressure- drop, high-flow ventilation system that serves as a conduit from the vehicle supply into the suit, up through a neck seal, into the breathing helmet cavity, back down through the neck seal, out of the suit, and returned to the vehicle. The concept also utilizes a modified demand-based breathing system configured to function seamlessly with the low-pressure-drop closed-loop ventilation system.

  12. Fiber reinforced composite loop space maintainer: An alternative to the conventional band and loop.

    PubMed

    Yeluri, Ramakrishna; Munshi, Autar Krishen

    2012-04-01

    The stainless steel band and loop appliance is the most commonly used fixed space maintainer in pediatric dentistry. But there are several disadvantages with this appliance such as the need for a cast or a working model, decalcification of the abutment tooth, loosening because of breakage or dissolution of the luting agent, tendency to get embedded in the soft tissue and the possibility of metal allergy. The purpose of this article is to present a simple, laboratory design of a "Fiber Reinforced Composite" (FRC) loop space maintainer and discuss the advantages over the traditional band and loop space maintainers.

  13. Fiber reinforced composite loop space maintainer: An alternative to the conventional band and loop

    PubMed Central

    Yeluri, Ramakrishna; Munshi, Autar Krishen

    2012-01-01

    The stainless steel band and loop appliance is the most commonly used fixed space maintainer in pediatric dentistry. But there are several disadvantages with this appliance such as the need for a cast or a working model, decalcification of the abutment tooth, loosening because of breakage or dissolution of the luting agent, tendency to get embedded in the soft tissue and the possibility of metal allergy. The purpose of this article is to present a simple, laboratory design of a “Fiber Reinforced Composite” (FRC) loop space maintainer and discuss the advantages over the traditional band and loop space maintainers. PMID:22629061

  14. Low power and highly precise closed-loop driving circuits for piezoelectric micromirrors with embedded capacitive position sensors

    NASA Astrophysics Data System (ADS)

    Rombach, S.; Marx, M.; Gu-Stoppel, S.; Manoli, Y.

    2016-03-01

    This work presents an integrated closed-loop driving circuit for previously reported PZT resonant micro-mirrors, which is based on embedded capacitive position sensors for minimizing the system footprint. Signals with a high SNR of 84 dB were measured, when the mechanical scan angle of the micro-mirror was 2°, so that high controlling resolution of 14 bit for the complete motion range of the mirror is enabled. The total power consumption of the closed-loop system is only 0.86mW. Measurement results of the closed-loop driven micromirror system are presented, demonstrating its competitiveness due to the great reliability, high precision and low-power consumption. Additionally, the implementation and performance of a self-resonant loop is discussed. Finally, the fabrication, temperature dependency and performance of embedded capacitive position sensors for single and dual axis PZT resonant micro-mirrors is evaluated and presented.

  15. [Biological review of completed suicide].

    PubMed

    Otsuka, Ikuo; Sora, Ichiro; Hishimoto, Akitoyo

    2016-06-01

    Family, twin and adoption studies have revealed genetic factors involved in suicide, while the accumulation of stress and mental illnesses are major contributing factors of suicide. Since higher lethality of suicidal behavior is considered to increase familial liability to suicidal behavior, we believe biological research of completed suicide is most important for a better understanding of the pathophysiology in suicide. Dysregulated hypothalamic-pituitary-adrenal axis has gained a special interest in the neurobiology of suicide, mostly because of the findings using a dexamethasone suppression test (DST), in which DST non-suppressors show a nearly 10-fold higher risk of completed suicide than DST suppressors in a depressed cohort. Other data mainly from postmortem brain studies indicate abnormalities of the noradrenergic-locus coeruleus system, serotonergic system, endogenous opioid system, brain-derived neurotrophic factor, inflammatory cytokines and omega-3 fatty acid in completed suicide. However, genetic research of complete suicide is behind other mental problems because it is extremely difficult to obtain tissue samples of completed suicide. Under the difficult situation, we now retain over 800 blood samples of suicide completers thanks to bereaved families' cooperation. We are actively working on the research of suicide, for instance, by performing a GWAS using 500 samples of suicide completers.

  16. [Biological review of completed suicide].

    PubMed

    Otsuka, Ikuo; Sora, Ichiro; Hishimoto, Akitoyo

    2016-06-01

    Family, twin and adoption studies have revealed genetic factors involved in suicide, while the accumulation of stress and mental illnesses are major contributing factors of suicide. Since higher lethality of suicidal behavior is considered to increase familial liability to suicidal behavior, we believe biological research of completed suicide is most important for a better understanding of the pathophysiology in suicide. Dysregulated hypothalamic-pituitary-adrenal axis has gained a special interest in the neurobiology of suicide, mostly because of the findings using a dexamethasone suppression test (DST), in which DST non-suppressors show a nearly 10-fold higher risk of completed suicide than DST suppressors in a depressed cohort. Other data mainly from postmortem brain studies indicate abnormalities of the noradrenergic-locus coeruleus system, serotonergic system, endogenous opioid system, brain-derived neurotrophic factor, inflammatory cytokines and omega-3 fatty acid in completed suicide. However, genetic research of complete suicide is behind other mental problems because it is extremely difficult to obtain tissue samples of completed suicide. Under the difficult situation, we now retain over 800 blood samples of suicide completers thanks to bereaved families' cooperation. We are actively working on the research of suicide, for instance, by performing a GWAS using 500 samples of suicide completers. PMID:27506081

  17. Does Double Loop Learning Create Reliable Knowledge?

    ERIC Educational Resources Information Center

    Blackman, Deborah; Connelly, James; Henderson, Steven

    2004-01-01

    This paper addresses doubts concerning the reliability of knowledge being created by double loop learning processes. Popper's ontological worlds are used to explore the philosophical basis of the way that individual experiences are turned into organisational knowledge, and such knowledge is used to generate organisational learning. The paper…

  18. Modeling and experimental investigating loop heat pipes

    SciTech Connect

    Kiseev, V.M.; Pogorelov, N.P.; Nouroutdinov, V.A.

    1995-12-31

    Design variants of two-phase systems of thermal control with heat flux inversion and experimental data are presented. Simplified functional dependence of heat flux for loop heat pipes with heat flux inversion versus effective pore radius of capillary structures under various external conditions are obtained.

  19. Numerical multi-loop integrals and applications

    NASA Astrophysics Data System (ADS)

    Freitas, A.

    2016-09-01

    Higher-order radiative corrections play an important role in precision studies of the electroweak and Higgs sector, as well as for the detailed understanding of large backgrounds to new physics searches. For corrections beyond the one-loop level and involving many independent mass and momentum scales, it is in general not possible to find analytic results, so that one needs to resort to numerical methods instead. This article presents an overview of a variety of numerical loop integration techniques, highlighting their range of applicability, suitability for automatization, and numerical precision and stability. In a second part of this article, the application of numerical loop integration methods in the area of electroweak precision tests is illustrated. Numerical methods were essential for obtaining full two-loop predictions for the most important precision observables within the Standard Model. The theoretical foundations for these corrections will be described in some detail, including aspects of the renormalization, resummation of leading log contributions, and the evaluation of the theory uncertainty from missing higher orders.

  20. Common hardware-in-the-loop development

    NASA Astrophysics Data System (ADS)

    Kim, Hajin J.; Moss, Stephen G.

    2010-04-01

    An approach to streamline the Hardware-In-the-Loop (HWIL) simulation development process is under evaluation. This Common HWIL technique will attempt to provide a more flexible, scalable system. The overall goal of the Common HWIL system will be to reduce cost by minimizing redundant development, operational labor and equipment expense. This paper will present current results and future plans of the development.