Large-Eddy-Simulation of a flow over a submerged rigid canopy

NASA Astrophysics Data System (ADS)

Monti, Alessandro; Omidyeganeh, Mohammad; Pinelli, Alfredo

2017-11-01

We have performed a wall-resolved Large-Eddy-Simulation of flow over a shallow submerged rigid canopy (H / h = 4 ; H and h are the open channel and the canopy heights respectively) in a transitional/dense regime (Nepf ARFM 44, 2011), at low Reynolds number (Reb =Ubulk H / ν = 6000). An immersed boundary method (Favier et al. JCP 261, 2013) has been adopted to represent filamentous rigid elements of the canopy. The presence of the permeable and porous canopy induces a typical inflection point in the mean velocity profile, depicting two separated and developed layers, outer boundary layer and in-canopy uniform flow. The aim of the work is to explore and unravel the mechanisms of the interaction between the fluid flow and the rigid canopy by identifying the physical parameters that govern the mixing mechanisms within the different flow layers and by exploring the impact of the sweep/ejection events at the canopy edge. The results show that the flow is characterised by large scale stream- and span-wise vortices and regions of different dynamics that affect also the filamentous layer, hence the mixing mechanisms.

Transport in a Trellised Agricultural Canopy: Turbulence and Particle Dispersion

NASA Astrophysics Data System (ADS)

Miller, Nathan E.

Turbulent transport of momentum, scalars, and heavy particles within plant canopies is strongly impacted by the canopy's effect on the flow field in the canopy sub-layer (CSL). Although considerable research has been conducted on momentum and particle transport in and above dense homogeneous plant canopies, relatively little has been performed in perennial trellised canopies which have repetitive inhomogeneities at the scale of the canopy height. Particle transport in such canopies is of great interest due to the increasing use of training systems of this type by growers and due to the multitude of particle types regularly dispersed in these canopies, e.g., fungal spores and droplets sprayed by growers. The focus of this work is on the transport of momentum and fungal-spore-sized particles in a trellised vineyard canopy. Due to the discrete two-dimensional nature of the vineyard canopy, CSL flow characteristics differ from those seen in homogeneous canopies and change as a function of the above-canopy wind direction. To determine the specifics of how the trellised canopy geometry and local meteorological conditions combine to determine the characteristics of momentum and particle transport under all possible wind directions, multiple field campaigns were conducted in a vineyard in Oregon. During each of these campaigns, extensive meteorological data were collected while particles were released into the canopy and particle concentrations were sampled at downwind locations. The meteorological and plume data showed that the canopy exerted inhomogeneous nonisotropic drag, caused channeling of the flow along the aisles, and led to persistent coherent flow effects. The combination of these effects led to momentum statistics varying with wind direction, particle transport being biased to along the rows, and plume shapes being more complicated than those seen in homogeneous canopies or freestream flows.

Canopy Flow Analysis Reveals the Advantage of Size in the Oldest Communities of Multicellular Eukaryotes

PubMed Central

Ghisalberti, Marco; Gold, David A.; Laflamme, Marc; Clapham, Matthew E.; Narbonne, Guy M.; Summons, Roger E.; Johnston, David T.; Jacobs, David K.

2015-01-01

Summary At Mistaken Point, Newfoundland, Canada, rangeomorph “fronds” dominate the earliest (579–565 million years ago) fossil communities of large (0.1 to 2 m height) multicellular benthic eukaryotes. They lived in low-flow environments, fueled by uptake [1–3] of dissolved reactants (osmotrophy). However, prokaryotes are effective osmotrophs, and the advantage of taller eukaryotic osmotrophs in this deepwater community context has not been addressed. We reconstructed flow-velocity profiles and vertical mixing using canopy flow models appropriate to the densities of the observed communities. Further modeling of processes at organismal surfaces documents increasing uptake with height in the community as a function of thinning of the diffusive boundary layer with increased velocity. The velocity profile, produced by canopy flow in the community, generates this advantage of upward growth. Alternative models of upward growth advantage based on redox/resource gradients fail, given the efficiency of vertical mixing. In benthic communities of osmotrophs of sufficient density, access to flow in low-flow settings provides an advantage to taller architecture, providing a selectional driver for communities of tall eukaryotes in contexts where phototropism cannot contribute to upward growth. These Ediacaran deep-sea fossils were preserved during the increasing oxygenation prior to the Cambrian radiation of animals and likely represent an important phase in the ecological and evolutionary transition to more complex eukaryotic forms. PMID:24462003

Wind shear, sensible heat flux and atmospheric stability within a forest canopy

NASA Astrophysics Data System (ADS)

Piringer, M.; Polreich, E.

2009-09-01

The scientific project "ROSALIA”, carried out in co-operation between ZAMG and the Austrian Federal Research and Training Centre for Forests, Natural Hazards, and Landscape, investigated the meteorological impacts on pollen emission and spread in a typical Central European forest of mixed deciduous and coniferous trees. The study area is the "Lehrforst Rosalia” of BOKU University approx. 60 km south of the city of Vienna in undulating terrain (300 - 750 m altitude). In this area, two meteorological towers of similar construction, one at crest height, the other in the small valley of the river "Ofenbach” near a meteorological ground station, have been equipped with 3D ultrasonic anemometers: one has been placed on top of the upper tower to representatively measure the gradient flow; the tower in the valley has been equipped with 3 instruments, one at the lowermost platform near ground, the second in the middle of the forest canopy, the third on top of the tower situated within the transition zone between the canopy and the "free” boundary layer where the gradient winds dominate. The sonic anemometers measure the three-dimensional wind vector; in addition, the sound velocity is derived, from which the so-called "sonic temperature” is calculated to derive the sensible heat flux. Other quantities are the means, standard deviations, and covariances of the wind components and the momentum flux, the Monin-Obukhov stability parameter, and the friction velocity. In the sloping dense forest canopy surrounding the tower, complex meteorological conditions and frequent decoupling of above-canopy and within-canopy flow has to be expected. The presence of a thick leaf canopy results in a stronger decoupling between the flow above and inside the canopy. As the investigation period covers April and May 2009, this gives the opportunity to discern between leaf-off (at the beginning) and leaf-on periods, with a proposed increase in decoupling with time. The aim of the study is to derive characteristic patterns of wind and atmospheric stability within the forest canopy for leaf-off and leaf-on periods as well as for days of intense versus negligible pollen production.

3D Reconstruction and Approximation of Vegetation Geometry for Modeling of Within-canopy Flows

NASA Astrophysics Data System (ADS)

Henderson, S. M.; Lynn, K.; Lienard, J.; Strigul, N.; Mullarney, J. C.; Norris, B. K.; Bryan, K. R.

2016-02-01

Aquatic vegetation can shelter coastlines from waves and currents, sometimes resulting in accretion of fine sediments. We developed a photogrammetric technique for estimating the key geometric vegetation parameters that are required for modeling of within-canopy flows. Accurate estimates of vegetation geometry and density are essential to refine hydrodynamic models, but accurate, convenient, and time-efficient methodologies for measuring complex canopy geometries have been lacking. The novel approach presented here builds on recent progress in photogrammetry and computer vision. We analyzed the geometry of aerial mangrove roots, called pneumatophores, in Vietnam's Mekong River Delta. Although comparatively thin, pneumatophores are more numerous than mangrove trunks, and thus influence near bed flow and sediment transport. Quadrats (1 m2) were placed at low tide among pneumatophores. Roots were counted and measured for height and diameter. Photos were taken from multiple angles around each quadrat. Relative camera locations and orientations were estimated from key features identified in multiple images using open-source software (VisualSfM). Next, a dense 3D point cloud was produced. Finally, algorithms were developed for automated estimation of pneumatophore geometry from the 3D point cloud. We found good agreement between hand-measured and photogrammetric estimates of key geometric parameters, including mean stem diameter, total number of stems, and frontal area density. These methods can reduce time spent measuring in the field, thereby enabling future studies to refine models of water flows and sediment transport within heterogenous vegetation canopies.

Four things we don't know about scalar transfer from plant canopies

NASA Astrophysics Data System (ADS)

Finnigan, J. J.

2009-04-01

In terrestrial plant canopies, turbulent exchange of water through evapotranspiration is intimately bound up with exchange of other scalars, heat and carbon dioxide in particular. Turbulent transport is rarely the process limiting exchange of these scalars between the biosphere and the atmosphere. However, in measurement programs like FLUXNET or when we parameterise surface exchange at the canopy scale in climate or weather models we must understand the mechanism of turbulent exchange in detail. In this talk we survey four current obstacles to extending our understanding of canopy turbulence from the idealised case of homogeneous flow in neutral stratification to complex flows in stable and unstable conditions. 1. Canopy eddy structure and the hydrodynamic instability Recent analysis of canopy LES and wind tunnel simulations has revealed the ‘two hairpin' structure of a characteristic canopy eddy. This structure explains a large body of results from a wide range of canopies and redefines the Roughness Sub Layer (RSL) as an asymptotic layer similar to the logarithmic and outer layers of the Planetary Boundary Layer. However, the nature of the non-linear ‘mixing-layer' instability process that gives canopy/RSL eddies their coherence and enhanced transport efficiency (as compared to eddies in the logarithmic layer above) is poorly understood so we do not know how resilient this instability and the eddies that depend upon it are to large scale flow perturbations or to changes in stability. 2. Turbulent Schmidt and Prandtl Numbers The scalar RSL can be defined as the layer across which the turbulent Schmidt (Sc) and Prandtl (Pr) numbers in neutral stratification change from their canopy top values of ~0.5, typical of mixing layers, to their logarithmic layer values of ~1.0, typical of boundary layers. The value of Sc or Pr is a critical parameter when adjusting Monin-Obukhov similarity theory (MOST) for the proximity of the canopy. The need for such adjustments has been recognized for several decades but they are still often ignored with serious consequences for prognostic models. However, at the present time we have only weak experimental evidence for the values of Sc and Pr in neutral conditions. More importantly, our poor understanding of the processes that set Sc and Pr and control their variation with diabatic stability is a barrier to generalizing MOST for use above tall canopies. 3. Diabatic stability and canopy flows As radiative cooling proceeds after sundown, turbulence within dense canopies can collapse suddenly leading to decoupling of the canopy layer from the boundary layer above. Theory suggests that this process should occur because of the different transport mechanisms of scalars and momentum at leaf level. So far no definitive experimental results are available to confirm or refute this theory or to set bounds on its applicability. This has important implications for transport and canopy microclimate. In particular we need to know how the controlling time scales of this process depend upon canopy density and radiative transfer. 4. Gravity currents Deep coherent gravity currents are often observed on long hill slopes covered with tall canopies. The process of turbulent collapse after sundown mentioned in (3) above produces a deep stable layer which is decoupled from the boundary layer above and must come into a new dynamic balance involving the hydrostatic and hydrodynamic pressure gradients and canopy drag. Scale analysis suggests that the strength of such currents depends upon hill length rather than hill slope while wind tunnel experiments reveal that they can penetrate onto flat ground far upwind of the hills on which they originate. Many field sites where flow is well behaved during the day can, therefore, be affected by such gravity flows at night. The parameters controlling the unsteady dynamics of this situation are not known but are of critical importance to measurements of water and other trace gas exchange over the diurnal cycle. The four topics chosen move from the fundamentals of canopy eddy structure to the impact at large scale of microscale processes. Each requires us to consider simultaneously processes from the leaf to the whole canopy scale and each will require effort from the whole community if serious progress is to be made.

Turbulent flows over sparse canopies

NASA Astrophysics Data System (ADS)

Sharma, Akshath; García-Mayoral, Ricardo

2018-04-01

Turbulent flows over sparse and dense canopies exerting a similar drag force on the flow are investigated using Direct Numerical Simulations. The dense canopies are modelled using a homogeneous drag force, while for the sparse canopy, the geometry of the canopy elements is represented. It is found that on using the friction velocity based on the local shear at each height, the streamwise velocity fluctuations and the Reynolds stress within the sparse canopy are similar to those from a comparable smooth-wall case. In addition, when scaled with the local friction velocity, the intensity of the off-wall peak in the streamwise vorticity for sparse canopies also recovers a value similar to a smooth-wall. This indicates that the sparse canopy does not significantly disturb the near-wall turbulence cycle, but causes its rescaling to an intensity consistent with a lower friction velocity within the canopy. In comparison, the dense canopy is found to have a higher damping effect on the turbulent fluctuations. For the case of the sparse canopy, a peak in the spectral energy density of the wall-normal velocity, and Reynolds stress is observed, which may indicate the formation of Kelvin-Helmholtz-like instabilities. It is also found that a sparse canopy is better modelled by a homogeneous drag applied on the mean flow alone, and not the turbulent fluctuations.

A New Scheme for the Simulation of Microscale Flow and Dispersion in Urban Areas by Coupling Large-Eddy Simulation with Mesoscale Models

NASA Astrophysics Data System (ADS)

Li, Haifeng; Cui, Guixiang; Zhang, Zhaoshun

2018-04-01

A coupling scheme is proposed for the simulation of microscale flow and dispersion in which both the mesoscale field and small-scale turbulence are specified at the boundary of a microscale model. The small-scale turbulence is obtained individually in the inner and outer layers by the transformation of pre-computed databases, and then combined in a weighted sum. Validation of the results of a flow over a cluster of model buildings shows that the inner- and outer-layer transition height should be located in the roughness sublayer. Both the new scheme and the previous scheme are applied in the simulation of the flow over the central business district of Oklahoma City (a point source during intensive observation period 3 of the Joint Urban 2003 experimental campaign), with results showing that the wind speed is well predicted in the canopy layer. Compared with the previous scheme, the new scheme improves the prediction of the wind direction and turbulent kinetic energy (TKE) in the canopy layer. The flow field influences the scalar plume in two ways, i.e. the averaged flow field determines the advective flux and the TKE field determines the turbulent flux. Thus, the mean, root-mean-square and maximum of the concentration agree better with the observations with the new scheme. These results indicate that the new scheme is an effective means of simulating the complex flow and dispersion in urban canopies.

Characterization of vertical mixing in oscillatory vegetated flows

NASA Astrophysics Data System (ADS)

Abdolahpour, M.; Ghisalberti, M.; Lavery, P.; McMahon, K.

2016-02-01

Seagrass meadows are primary producers that provide important ecosystem services, such as improved water quality, sediment stabilisation and trapping and recycling of nutrients. Most of these ecological services are strongly influenced by the vertical exchange of water across the canopy-water interface. That is, vertical mixing is the main hydrodynamic process governing the large-scale ecological and environmental impact of seagrass meadows. The majority of studies into mixing in vegetated flows have focused on steady flow environments whereas many coastal canopies are subjected to oscillatory flows driven by surface waves. It is known that the rate of mass transfer will vary greatly between unidirectional and oscillatory flows, necessitating a specific investigation of mixing in oscillatory canopy flows. In this study, we conducted an extensive laboratory investigation to characterise the rate of vertical mixing through a vertical turbulent diffusivity (Dt,z). This has been done through gauging the evolution of vertical profiles of concentration (C) of a dye sheet injected into a wave-canopy flow. Instantaneous measurement of the variance of the vertical concentration distribution ( allowed the estimation of a vertical turbulent diffusivity (). Two types of model canopies, rigid and flexible, with identical heights and frontal areas, were subjected to a wide and realistic range of wave height and period. The results showed two important mechanisms that dominate vertical mixing under different conditions: a shear layer that forms at the top of the canopy and wake turbulence generated by the stems. By allowing a coupled contribution of wake and shear layer mixing, we present a relationship that can be used to predict the rate of vertical mixing in coastal canopies. The results further showed that the rate of vertical mixing within flexible vegetation was always lower than the corresponding rigid canopy, confirming the impact of plant flexibility on canopy-flow interactions.

Water Vapor Exchange in a Costa Rican Lower Montane Tropical Forest

NASA Astrophysics Data System (ADS)

Andrews, R.; Miller, G. R.; Cahill, A. T.; Moore, G. W.; Aparecido, L. M. T.

2015-12-01

Because of high canopy interception in tropical forests, evaporation from wet canopy surfaces makes up a sizeable portion of the total water vapor flux. The modeling complexities presented by changing canopy wetness, along with a scarcity of land-atmosphere flux exchange data from tropical forests, means evapotranspiration (ET) processes have been poorly represented in the tropics in land-surface modeling schemes. To better understand tropical forest ET, we will evaluate the influence of canopy wetness and various micrometeorological data on ET partitioning and total ET flux. We have collected flux data from a lower montane forest in Costa Rica at a newly established AmeriFlux site, which notably has the highest mean annual precipitation of any site in the network. The site features a 39-m canopy tower, equipped with two eddy covariance systems (LI-7200, LI-COR), a CO2/H2O atmospheric profile system (AP200, Campbell Scientific), leaf wetness sensors (LWS, Decagon Devices), sap flow sensors, and a soil respiration chamber (LI-8100A, LI-COR) as well as an array of other micrometeorological sensors. At the site, total ET is driven primarily by available energy, and to a lesser extent, by vapor pressure deficit. Average daily latent energy fluxes peak at values of 160, 75, and 35 W m-2 for dry, partially wet, and wet canopy conditions respectively. Correlations between latent energy flux and all other variables are strongest for drier canopy conditions. Complex relationships between canopy wetness and tropical forest ET cause the environmental controls on these fluxes to be significantly different from those in other biomes. As a result, a new modeling paradigm is needed to more accurately model ET differences between tropical forests and other vegetation types.

A high-resolution large-eddy simulation of turbulent flow within and above urban-like canopies

NASA Astrophysics Data System (ADS)

Maché, M.; Calmet, I.; Sini, J.-F.

2009-09-01

The urban microclimate is a result of the interactions between regional climatology, morphology of urban fabric and thermo-radiative and hydric properties of the materials constituting the urban surfaces. Modern urban planning tries to compact cities for avoiding spreading of the town area in order to reduce the need of transports. The climatic effects of this politic are not well known yet. This work is the first step of a study whose main purpose is to propose an urban planning politic which considers the urban heat island within the context of the climate change. Therefore it aims to understand the effects of building configuration on the momentum, heat and humidity turbulent transfers. Urban structures are quite heterogeneous and complex. To analyse the interactions between urban canopies and the atmosphere, the resolution has to be high enough that mean flow characteristics between the buildings can be observed as well as turbulent structures that develop above roof level. For that purpose, the Large-Eddy Simulation atmospheric model ARPS (Advanced Regional Prediction System) is employed. The subgrid scales are modelled by means of the resolution of an equation for the subgrid-scale turbulent kinetic energy. The version used is this study is based on the developments of Dupont & Brunet (2008) who introduced a drag force approach to simulate the influence of the vegetal covers on the low atmosphere. The application of this model on urban canopies requires adjusting the drag coefficient (Cd) in function of the frontal density (Af) and of the building arrangement. Its dependency on configuration (staggered or aligned arrays) and on frontal density is investigated. In order to put in light the main characteristics of the flow field and to validate the model in urban configurations, the turbulent flow above arrays of obstacles is investigated here for different arrangements and packing densities. The grid spacing is set to a few tens of meters in both horizontal directions and one meter in vertical direction, within the canopy. Above the canopy, grids are stretched vertically to reach four meters in average. The surface density Af is calculated in function of the geometry of the obstacles present in a grid cell. The effect of Cd values on the turbulent statistics is compared with results from wind tunnel experiments or building resolving simulations. The ability of the model to reproduce the major turbulent organized structures above the canopy and the influence of the building configuration is also studied, in terms of intensity, size and orientation of the structures. Further research will be done to investigate the effect of configuration of buildings with more complex geometries, like variable building height, on turbulent flow characteristics. To understand the climatologic features of a real city this approach will be completed by the introduction of a parametrization for heat and humidity exchanges inside the canopy.

Modeling Coherent Structures in Canopy Flows

NASA Astrophysics Data System (ADS)

Luhar, Mitul

2017-11-01

It is well known that flows over vegetation canopies are characterized by the presence of energetic coherent structures. Since the mean profile over dense canopies exhibits an inflection point, the emergence of such structures is often attributed to a Kelvin-Helmholtz instability. However, though stability analyses provide useful mechanistic insights into canopy flows, they are limited in their ability to generate predictions for spectra and coherent structure. The present effort seeks to address this limitation by extending the resolvent formulation (McKeon and Sharma, 2010, J. Fluid Mech.) to canopy flows. Under the resolvent formulation, the turbulent velocity field is expressed as a superposition of propagating modes, identified via a gain-based (singular value) decomposition of the Navier-Stokes equations. A key advantage of this approach is that it reconciles multiple mechanisms that lead to high amplification in turbulent flows, including modal instability, transient growth, and critical-layer phenomena. Further, individual high-gain modes can be combined to generate more complete models for coherent structure and velocity spectra. Preliminary resolvent-based model predictions for canopy flows agree well with existing experiments and simulations.

Water-tunnel study results of a TF/A-18 and F/A-18 canopy flow visualization

NASA Technical Reports Server (NTRS)

Johnson, Steven A.; Fisher, David F.

1990-01-01

A water tunnel study examining the influence of canopy shape on canopy and leading edge extension flow patterns was initiated. The F/A-18 single-place canopy model and the TF/A-18 two place canopy model were the study subjects. Plan view and side view photographs showing the flow patterns created by injected colored dye are presented for 0 deg and 5 deg sideslip angles. Photographs taken at angle of attack and sideslip conditions correspond to test departure points found in flight test. Flight experience has shown that the TF/A-18 airplane departs in regions where the F/A-18 airplane is departure-resistant. The study results provide insight into the differences in flow patterns which may influence the resulting aerodynamics of the TF/A-18 and F/A-18 aircraft. It was found that at 0 deg sideslip, the TF/A-18 model has more downward flow on the sides of the canopy than the F/A-18 model. This could be indicative of flow from the leading edge extension (LEX) vortexes impinging on the sides of the wider TF/A-18 canopy. In addition, the TF/A-18 model has larger areas of asymmetric separated and unsteady flow on the LEXs and fuselage, possibly indicating a lateral and directional destabilizing effect at the conditions studied.

Atmospheric stability effects on wind fields and scalar mixing within and just above a subalpine forest in sloping terrain

USGS Publications Warehouse

Burns, Sean P.; Sun, Jielun; Lenschow, D.H.; Oncley, S.P.; Stephens, B.B.; Yi, C.; Anderson, D.E.; Hu, Jiawen; Monson, Russell K.

2011-01-01

Air temperature Ta, specific humidity q, CO2 mole fraction ??c, and three-dimensional winds were measured in mountainous terrain from five tall towers within a 1 km region encompassing a wide range of canopy densities. The measurements were sorted by a bulk Richardson number Rib. For stable conditions, we found vertical scalar differences developed over a "transition" region between 0.05 < Rib < 0.5. For strongly stable conditions (Rib > 1), the vertical scalar differences reached a maximum and remained fairly constant with increasing stability. The relationships q and ??c have with Rib are explained by considering their sources and sinks. For winds, the strong momentum absorption in the upper canopy allows the canopy sublayer to be influenced by pressure gradient forces and terrain effects that lead to complex subcanopy flow patterns. At the dense-canopy sites, soil respiration coupled with wind-sheltering resulted in CO2 near the ground being 5-7 ??mol mol-1 larger than aloft, even with strong above-canopy winds (near-neutral conditions). We found Rib-binning to be a useful tool for evaluating vertical scalar mixing; however, additional information (e.g., pressure gradients, detailed vegetation/topography, etc.) is needed to fully explain the subcanopy wind patterns. Implications of our results for CO2 advection over heterogenous, complex terrain are discussed. ?? 2010 Springer Science+Business Media B.V.

Effects of structural complexity on within-canopy light environments and leaf traits in a northern mixed deciduous forest

NASA Astrophysics Data System (ADS)

Fotis, A. T.; Curtis, P.

2016-12-01

Canopy structure influences forest productivity through its effects on the distribution of radiation and the light-induced changes in leaf physiological traits. Due to the difficulty of accessing and measuring forest canopies, few field-based studies have quantitatively linked these divergent scales of canopy functioning. The objective of our study was to investigate how canopy structure affects light profiles within a forest canopy and whether leaves of mature trees adjust morphologically and biochemically to the light environments characteristic of canopies with different structural complexity. We used a combination of light detection and ranging (LiDAR) data and hemispherical photographs to quantify canopy structure and light environments, respectively, and a telescoping pole to sample leaves. Leaf mass per area (LMA), nitrogen on an area basis (Narea) and chlorophyll on a mass basis (Chlmass) were measured in four co-dominant species (Acer rubrum, Fagus grandifolia, Pinus strobus and Quercus rubra) at different heights in plots with similar leaf area index (LAI) but contrasting canopy complexity (rugosity). We found that more complex canopies had greater porosity and reduced light variability in the midcanopy while total light interception was unchanged relative to less complex canopies. Leaves of F. grandifolia, Q. rubra, and P. strobus shifted towards sun-acclimation phenotypes with increasing canopy complexity while leaves of A. rubrum became more shade-acclimated (lower LMA) in the upper canopy of more complex stands, despite no differences in total light interception. Broadleaf species showed further acclimation by increasing Narea and reducing Chlmass as LMA increased, while P. strobus showed no change in Narea and Chlmass with increasing LMA. Our results provide new insight on how light distribution and leaf acclimation in mature trees might be altered when natural and anthropogenic disturbances cause structural changes in the canopy.

Amazon rainforest exchange of carbon and subcanopy air flow: Manaus LBA site--a complex terrain condition.

PubMed

Tóta, Julio; Fitzjarrald, David Roy; da Silva Dias, Maria A F

2012-01-01

On the moderately complex terrain covered by dense tropical Amazon Rainforest (Reserva Biologica do Cuieiras--ZF2--02°36'17.1'' S, 60°12'24.4'' W), subcanopy horizontal and vertical gradients of the air temperature, CO(2) concentration and wind field were measured for the dry and wet periods in 2006. We tested the hypothesis that horizontal drainage flow over this study area is significant and can affect the interpretation of the high carbon uptake rates reported by previous works at this site. A similar experimental design as the one by Tóta et al. (2008) was used with a network of wind, air temperature, and CO(2) sensors above and below the forest canopy. A persistent and systematic subcanopy nighttime upslope (positive buoyancy) and daytime downslope (negative buoyancy) flow pattern on a moderately inclined slope (12%) was observed. The microcirculations observed above the canopy (38 m) over the sloping area during nighttime presents a downward motion indicating vertical convergence and correspondent horizontal divergence toward the valley area. During the daytime an inverse pattern was observed. The micro-circulations above the canopy were driven mainly by buoyancy balancing the pressure gradient forces. In the subcanopy space the microcirculations were also driven by the same physical mechanisms but probably with the stress forcing contribution. The results also indicated that the horizontal and vertical scalar gradients (e.g., CO(2)) were modulated by these micro-circulations above and below the canopy, suggesting that estimates of advection using previous experimental approaches are not appropriate due to the tridimensional nature of the vertical and horizontal transport locally. This work also indicates that carbon budget from tower-based measurement is not enough to close the system, and one needs to include horizontal and vertical advection transport of CO(2) into those estimates.

Amazon Rainforest Exchange of Carbon and Subcanopy Air Flow: Manaus LBA Site—A Complex Terrain Condition

PubMed Central

Tóta, Julio; Roy Fitzjarrald, David; da Silva Dias, Maria A. F.

2012-01-01

On the moderately complex terrain covered by dense tropical Amazon Rainforest (Reserva Biologica do Cuieiras—ZF2—02°36′17.1′′ S, 60°12′24.4′′ W), subcanopy horizontal and vertical gradients of the air temperature, CO2 concentration and wind field were measured for the dry and wet periods in 2006. We tested the hypothesis that horizontal drainage flow over this study area is significant and can affect the interpretation of the high carbon uptake rates reported by previous works at this site. A similar experimental design as the one by Tóta et al. (2008) was used with a network of wind, air temperature, and CO2 sensors above and below the forest canopy. A persistent and systematic subcanopy nighttime upslope (positive buoyancy) and daytime downslope (negative buoyancy) flow pattern on a moderately inclined slope (12%) was observed. The microcirculations observed above the canopy (38 m) over the sloping area during nighttime presents a downward motion indicating vertical convergence and correspondent horizontal divergence toward the valley area. During the daytime an inverse pattern was observed. The micro-circulations above the canopy were driven mainly by buoyancy balancing the pressure gradient forces. In the subcanopy space the microcirculations were also driven by the same physical mechanisms but probably with the stress forcing contribution. The results also indicated that the horizontal and vertical scalar gradients (e.g., CO2) were modulated by these micro-circulations above and below the canopy, suggesting that estimates of advection using previous experimental approaches are not appropriate due to the tridimensional nature of the vertical and horizontal transport locally. This work also indicates that carbon budget from tower-based measurement is not enough to close the system, and one needs to include horizontal and vertical advection transport of CO2 into those estimates. PMID:22619608

Mean and turbulent flow downstream of a low-intensity fire: influence of canopy and background atmospheric conditions

Treesearch

Michael T. Kiefer; Warren E. Heilman; Shiyuan Zhong; Joseph J. Charney; Xindi Bian

2015-01-01

This study examines the sensitivity of mean and turbulent flow in the planetary boundary layer and roughness sublayer to a low-intensity fire and evaluates whether the sensitivity is dependent on canopy and background atmospheric properties. The ARPS-CANOPY model, a modified version of the Advanced Regional Prediction System (ARPS) model with a canopy parameterization...

Effects of Fetch on Turbulent Flow and Pollutant Dispersion Within a Cubical Canopy

NASA Astrophysics Data System (ADS)

Michioka, Takenobu; Takimoto, Hiroshi; Ono, Hiroki; Sato, Ayumu

2018-03-01

The effects of fetch on turbulent flow and pollutant dispersion within a canopy formed by regularly-spaced cubical objects is investigated using large-eddy simulation. Six tracer gases are simultaneously released from a ground-level continuous pollutant line source placed parallel to the spanwise axis at the first, second, third, fifth, seventh and tenth rows. Beyond the seventh row, the standard deviations of the fluctuations in the velocity components and the Reynolds shear stresses reach nearly equivalent states. Low-frequency turbulent flow is generated near the bottom surface around the first row and develops as the fetch increases. The turbulent flow eventually passes through the canopy at a near-constant interval. The mean concentration within the canopy reaches a near-constant value beyond the seventh row. In the first and second rows, narrow coherent structures frequently affect the pollutant escape from the top of the canopy. These structures increase in width as the fetch increases, and they mainly affect the removal of pollutants from the canopy.

Dynamics of Plant Flow Interactions for the Seagrass Amphibolis antarctica: Field Observations and Model Simulations

NASA Astrophysics Data System (ADS)

Verduin, J. J.; Backhaus, J. O.

2000-02-01

Seagrass canopies influence water flow partly as a consequence of their morphology. Amphibolis antarctica (Labill.) Sonder et Aschers. ex Aschers, an Australian endemic, is different morphologically from more-commonly studied blade-like seagrasses such as Zostera and Thalassia. Field measurements and model predictions were used to characterize water flow within and above an A. antarctica meadow. A series of high resolution three-dimensional velocity measurements were obtained within, above and adjacent to A. antarctica meadows at different heights above the seabed. Field observations on the effect of seagrass canopy on flow show an overall damping effect. Power spectra of the velocity data revealed a reduction in energy from 500 (cm s -1) 2s -1to 10 (cm s -1) 2s -1within the canopy. Profiles of kinetic energy were calculated from in situ velocity measurements at 5 cm increments from 10 cm to 80 cm above the seabed, within and above the seagrass canopy. There was an intensification of flow where the canopy structure was densest (approximately 40 cm above the seabed) and slightly above it. The baffling effect of the canopy was most effective 25 cm above the seabed: here the flow was reduced from 50 cm s -1at free surface to 2-5 cm s -1. A slight increase in flow within the canopy was seen 10 cm above the sediment due to reduced friction exerted by the lower leafless stems of the plants. A high resolution three-dimensional hydrodynamic model was coupled to a ten-layer canopy model for shallow coastal site dimensions. By applying different friction factors to various parts of the plant, mimicking its architecture, water flow was shown to be altered by the plant canopy according to its morphology. The derived computational results were in good agreement with the observed in situ velocity and kinetic energy changes. As a result of this study it is now possible to accurately predict plant-flow interactions determining pollen and particles distribution and dispersal.

Investigation of the flow inside an urban canopy immersed into an atmospheric boundary layer using laser Doppler anemometry

NASA Astrophysics Data System (ADS)

Herpin, Sophie; Perret, Laurent; Mathis, Romain; Tanguy, Christian; Lasserre, Jean-Jacques

2018-05-01

Laser Doppler anemometry (LDA) is used to investigate the flow inside an idealized urban canopy consisting of a staggered array of cubes with a 25% density immersed into an atmospheric boundary layer with a Reynolds number of δ ^+=32{,}300. The boundary layer thickness to cube height ratio (δ /h=22.7) is large enough to be representative of atmospheric surface layer in neutral conditions. The LDA measurements give access to pointwise time-resolved data at several positions inside the canopy (z=h/4, h/2, and h). Synchronized hot-wire measurements above the canopy (inertial region and roughness sublayer) are also realized to get access to interactions between the different flow regions. The wall-normal mean velocity profile and Reynolds stresses show a good agreement with available data in the literature, although some differences are observed on the standard deviation of the spanwise component. A detailed spectral and integral time scale analysis inside the canopy is then carried out. No clear footprint of a periodic vortex shedding on the sides of the cubes could be identified on the power spectra, owing to the multiple cube-to-cube interactions occuring within a canopy with a building density in the wake interference regime. Results also suggest that interactions between the most energetics scales of the boundary layer and those related to the cube canopy take place, leading to a broadening of the energy peak in the spectra within the canopy. This is confirmed by the analysis of coherence results between the flow inside and above the canopy. It is shown that linear interactions mechanisms are significant, but reduced compared to smooth-wall boundary-layer flow. To our knowledge, this is the first time such results are shown on the dynamics of the flow inside an urban canopy.

Effects of structural complexity on within-canopy light environments and leaf traits in a northern mixed deciduous forest.

PubMed

Fotis, Alexander T; Curtis, Peter S

2017-10-01

Canopy structure influences forest productivity through its effects on the distribution of radiation and the light-induced changes in leaf physiological traits. Due to the difficulty of accessing and measuring forest canopies, few field-based studies have quantitatively linked these divergent scales of canopy functioning. The objective of our study was to investigate how canopy structure affects light profiles within a forest canopy and whether leaves of mature trees adjust morphologically and biochemically to the light environments characteristic of canopies with different structural complexity. We used a combination of light detection and ranging (LiDAR) data and hemispherical photographs to quantify canopy structure and light environments, respectively, and a telescoping pole to sample leaves. Leaf mass per area (LMA), nitrogen on an area basis (Narea) and chlorophyll on a mass basis (Chlmass) were measured in red maple (Acer rubrum), american beech (Fagus grandifolia), white pine (Pinus strobus), and northern red oak (Quercus rubra) at different heights in plots with similar leaf area index but contrasting canopy complexity (rugosity). We found that more complex canopies had greater porosity and reduced light variability in the midcanopy while total light interception was unchanged relative to less complex canopies. Leaf phenotypes of F. grandifolia, Q. rubra and P. strobus were more sun-acclimated in the midstory of structurally complex canopies while leaf phenotypes of A. rubrum were more shade-acclimated (lower LMA) in the upper canopy of more complex stands, despite no differences in total light interception. Broadleaf species showed further differences in acclimation with increased Narea and reduced Chlmass in leaves with higher LMA, while P. strobus showed no change in Narea and Chlmass with higher LMA. Our results provide new insight on how light distribution and leaf acclimation in mature trees might be altered when natural and anthropogenic disturbances cause structural changes in the canopy. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Evaluation of an ARPS-based canopy flow modeling system for use in future operational smoke prediction efforts

Treesearch

M. T. Kiefer; S. Zhong; W. E. Heilman; J. J. Charney; X. Bian

2013-01-01

Efforts to develop a canopy flow modeling system based on the Advanced Regional Prediction System (ARPS) model are discussed. The standard version of ARPS is modified to account for the effect of drag forces on mean and turbulent flow through a vegetation canopy, via production and sink terms in the momentum and subgrid-scale turbulent kinetic energy (TKE) equations....

Relationships between SAP-flow measurements, whole-canopy transpiration and reference evapotranspiration in field-grown papaya (Carica papaya L.)

USDA-ARS?s Scientific Manuscript database

Whole-canopy gas exchange measurement in papaya can provide a scientific basis to optimize irrigation, and fruit yield and quality. The objectives of this study were to: 1) verify the relationship between xylem sap flow measured by the heat coefficient method and whole canopy transpiration in ‘Gra...

Influence of a forest canopy on velocity and temperature profiles under synoptic conditions

NASA Astrophysics Data System (ADS)

Pattantyus, A.; Hocut, C. M.; Wang, Y.; Creegan, E.; Krishnamurthy, R.; Otarola-Bust, S.; Leo, L. S.; Fernando, H. J. S.

2017-12-01

Numerous field campaigns have found the importance of surface conditions on boundary layer evolution. Specifically, soil properties were found to control surface fluxes of heat, moisture, and momentum that significantly modulated the atmospheric boundary layer (ABL) over flat and sparsely vegetated surfaces. There have been increasing numbers of studies related to canopy impacts on the boundary layer, such as CHATS, however few canopy studies over complex terrain have been performed with limited instrumentation. The recent Perdigão campaign greatly augmented the previous datasets available by instrumenting a unique, parallel ridge mountain in Perdigão, Portugal in unprecedented spatial and temporal resolution using traditional mast mounted sensors, instrumented aerial platforms, and remote sensing instrumentation. To aid the canopy studies, the Army Research Laboratory deployed sonic anemometers within the canopy transecting the ridges perpendicularly and placed five additional heavily instrumented meteorological masts on the northeast facing slope to investigate detailed slope flows. At each of these towers, there was an average of six levels of temperature, relative humidity, and wind sensors located above & below the canopy height which allowed a detailed study of the sub-canopy layer. In addition to the towers, two scanning Doppler LiDARs were oriented such that they performed synchronized dual Doppler virtual tower scans, extending from the canopy interface to several hundred meters above. Synoptically forced periods were analyzed to examine: the ABL structure of temperature, moisture, wind, and turbulent kinetic energy. Of particular interest are the shear layer at the canopy interface, recirculation events, as well as ejection and sweep events within the canopy and how these modify surface fluxes along the slopes.

Large-Eddy Simulation Comparison of Neutral Flow Over a Canopy: Sensitivities to Physical and Numerical Conditions, and Similarity to Other Representations

NASA Astrophysics Data System (ADS)

Ouwersloot, H. G.; Moene, A. F.; Attema, J. J.; de Arellano, J. Vilà-Guerau

2017-01-01

The representation of a neutral atmospheric flow over roughness elements simulating a vegetation canopy is compared between two large-eddy simulation models, wind-tunnel data and recently updated empirical flux-gradient relationships. Special attention is devoted to the dynamics in the roughness sublayer above the canopy layer, where turbulence is most intense. By demonstrating that the flow properties are consistent across these different approaches, confidence in the individual independent representations is bolstered. Systematic sensitivity analyses with the Dutch Atmospheric Large-Eddy Simulation model show that the transition in the one-sided plant-area density from the canopy layer to unobstructed air potentially alters the flow in the canopy and roughness sublayer. Anomalously induced fluctuations can be fully suppressed by spreading the transition over four steps. Finer vertical resolutions only serve to reduce the magnitude of these fluctuations, but do not prevent them. To capture the general dynamics of the flow, a resolution of 10 % of the canopy height is found to suffice, while a finer resolution still improves the representation of the turbulent kinetic energy. Finally, quadrant analyses indicate that momentum transport is dominated by the mean velocity components within each quadrant. Consequently, a mass-flux approach can be applied to represent the momentum flux.

Free-surface tracking of submerged features to infer hydrodynamic flow characteristics

NASA Astrophysics Data System (ADS)

Mandel, Tracy; Rosenzweig, Itay; Koseff, Jeffrey

2016-11-01

As sea level rise and stronger storm events threaten our coastlines, increased attention has been focused on coastal vegetation as a potentially resilient, financially viable tool to mitigate flooding and erosion. However, the actual effect of this "green infrastructure" on near-shore wave fields and flow patterns is not fully understood. For example, how do wave setup, wave nonlinearity, and canopy-generated instabilities change due to complex bottom roughness? Answering this question requires detailed knowledge of the free surface. We develop easy-to-use laboratory techniques to remotely measure physical processes by imaging the apparent distortion of the fixed features of a submerged cylinder array. Measurements of surface turbulence from a canopy-generated Kelvin-Helmholtz instability are possible with a single camera. A stereoscopic approach similar to Morris (2004) and Gomit et al. (2013) allows for measurement of waveform evolution and the effect of vegetation on wave steepness and nonlinearity.

Large eddy simulation of forest canopy flow for wildland fire modeling

Treesearch

Eric Mueller; William Mell; Albert Simeoni

2014-01-01

Large eddy simulation (LES) based computational fluid dynamics (CFD) simulators have obtained increasing attention in the wildland fire research community, as these tools allow the inclusion of important driving physics. However, due to the complexity of the models, individual aspects must be isolated and tested rigorously to ensure meaningful results. As wind is a...

Measurements and Computations of Flow in an Urban Street System

NASA Astrophysics Data System (ADS)

Castro, Ian P.; Xie, Zheng-Tong; Fuka, V.; Robins, Alan G.; Carpentieri, M.; Hayden, P.; Hertwig, D.; Coceal, O.

2017-02-01

We present results from laboratory and computational experiments on the turbulent flow over an array of rectangular blocks modelling a typical, asymmetric urban canopy at various orientations to the approach flow. The work forms part of a larger study on dispersion within such arrays (project DIPLOS) and concentrates on the nature of the mean flow and turbulence fields within the canopy region, recognising that unless the flow field is adequately represented in computational models there is no reason to expect realistic simulations of the nature of the dispersion of pollutants emitted within the canopy. Comparisons between the experimental data and those obtained from both large-eddy simulation (LES) and direct numerical simulation (DNS) are shown and it is concluded that careful use of LES can produce generally excellent agreement with laboratory and DNS results, lending further confidence in the use of LES for such situations. Various crucial issues are discussed and advice offered to both experimentalists and those seeking to compute canopy flows with turbulence resolving models.

Flow adjustment inside homogeneous canopies after a leading edge – An analytical approach backed by LES

DOE PAGES

Kroniger, Konstantin; Banerjee, Tirtha; De Roo, Frederik; ...

2017-10-06

A two-dimensional analytical model for describing the mean flow behavior inside a vegetation canopy after a leading edge in neutral conditions was developed and tested by means of large eddy simulations (LES) employing the LES code PALM. The analytical model is developed for the region directly after the canopy edge, the adjustment region, where one-dimensional canopy models fail due to the sharp change in roughness. The derivation of this adjustment region model is based on an analytic solution of the two-dimensional Reynolds averaged Navier–Stokes equation in neutral conditions for a canopy with constant plant area density (PAD). The main assumptionsmore » for solving the governing equations are separability of the velocity components concerning the spatial variables and the neglection of the Reynolds stress gradients. These two assumptions are verified by means of LES. To determine the emerging model parameters, a simultaneous fitting scheme was applied to the velocity and pressure data of a reference LES simulation. Furthermore a sensitivity analysis of the adjustment region model, equipped with the previously calculated parameters, was performed varying the three relevant length, the canopy height ( h), the canopy length and the adjustment length ( Lc), in additional LES. Even if the model parameters are, in general, functions of h/ Lc, it was found out that the model is capable of predicting the flow quantities in various cases, when using constant parameters. Subsequently the adjustment region model is combined with the one-dimensional model of Massman, which is applicable for the interior of the canopy, to attain an analytical model capable of describing the mean flow for the full canopy domain. As a result, the model is tested against an analytical model based on a linearization approach.« less

Flow adjustment inside homogeneous canopies after a leading edge – An analytical approach backed by LES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kroniger, Konstantin; Banerjee, Tirtha; De Roo, Frederik

A two-dimensional analytical model for describing the mean flow behavior inside a vegetation canopy after a leading edge in neutral conditions was developed and tested by means of large eddy simulations (LES) employing the LES code PALM. The analytical model is developed for the region directly after the canopy edge, the adjustment region, where one-dimensional canopy models fail due to the sharp change in roughness. The derivation of this adjustment region model is based on an analytic solution of the two-dimensional Reynolds averaged Navier–Stokes equation in neutral conditions for a canopy with constant plant area density (PAD). The main assumptionsmore » for solving the governing equations are separability of the velocity components concerning the spatial variables and the neglection of the Reynolds stress gradients. These two assumptions are verified by means of LES. To determine the emerging model parameters, a simultaneous fitting scheme was applied to the velocity and pressure data of a reference LES simulation. Furthermore a sensitivity analysis of the adjustment region model, equipped with the previously calculated parameters, was performed varying the three relevant length, the canopy height ( h), the canopy length and the adjustment length ( Lc), in additional LES. Even if the model parameters are, in general, functions of h/ Lc, it was found out that the model is capable of predicting the flow quantities in various cases, when using constant parameters. Subsequently the adjustment region model is combined with the one-dimensional model of Massman, which is applicable for the interior of the canopy, to attain an analytical model capable of describing the mean flow for the full canopy domain. As a result, the model is tested against an analytical model based on a linearization approach.« less

[Canopy conductance characteristics of poplar in agroforestry system in west Liaoning Province of Northeast China].

PubMed

Li, Zheng; Niu, Li-Hua; Yuan, Feng-Hui; Guan, De-Xin; Wang, An-Zhi; Jin, Chang-Jie; Wu, Jia-Bing

2012-11-01

By using Granier' s thermal dissipation probe, the sap flow of poplar in a poplar-maize agroforestry system in west Liaoning was continuously measured, and as well, the environmental factors such as air temperature, air humidity, net radiation, wind speed, soil temperature, and soil moisture content were synchronically measured. Based on the sap flow data, the canopy conductance of poplar was calculated with simplified Penman-Monteith equation. In the study area, the diurnal variation of poplar' s canopy conductance showed a "single peak" curve, whereas the seasonal variation showed a decreasing trend. There was a negative logarithm relationship between the canopy conductance and vapor pressure deficit, with the sensitivity of canopy conductance to vapor pressure deficit change decreased gradually from May to September. The canopy conductance had a positive relationship with solar radiation. In different months, the correlation degree of canopy conductance with environmental factors differed. The vapor pressure deficit in the whole growth period of poplar was the most significant environmental factor correlated with the canopy conductance.

The Spatial Resolution in the Computer Modelling of Atmospheric Flow over a Double-Hill Forested Region

NASA Astrophysics Data System (ADS)

Palma, J. L.; Rodrigues, C. V.; Lopes, A. S.; Carneiro, A. M. C.; Coelho, R. P. C.; Gomes, V. C.

2017-12-01

With the ever increasing accuracy required from numerical weather forecasts, there is pressure to increase the resolution and fidelity employed in computational micro-scale flow models. However, numerical studies of complex terrain flows are fundamentally bound by the digital representation of the terrain and land cover. This work assess the impact of the surface description on micro-scale simulation results at a highly complex site in Perdigão, Portugal, characterized by a twin parallel ridge topography, densely forested areas and an operating wind turbine. Although Coriolis and stratification effects cannot be ignored, the study is done under neutrally stratified atmosphere and static inflow conditions. The understanding gained here will later carry over to WRF-coupled simulations, where those conditions do not apply and the flow physics is more accurately modelled. With access to very fine digital mappings (<1m horizontal resolution) of both topography and land cover (roughness and canopy cover, both obtained through aerial LIDAR scanning of the surface) the impact of each element of the surface description on simulation results can be individualized, in order to estimate the resolution required to satisfactorily resolve them. Starting from the bare topographic description, in its coursest form, these include: a) the surface roughness mapping, b) the operating wind turbine, c) the canopy cover, as either body forces or added surface roughness (akin to meso-scale modelling), d) high resolution topography and surface cover mapping. Each of these individually will have an impact near the surface, including the rotor swept area of modern wind turbines. Combined they will considerably change flow up to boundary layer heights. Sensitivity to these elements cannot be generalized and should be assessed case-by-case. This type of in-depth study, unfeasible using WRF-coupled simulations, should provide considerable insight when spatially allocating mesh resolution for accurate resolution of complex flows.

Wind Tunnel Visualization of the Flow Over a Full-Scale F/A-18 Aircraft

NASA Technical Reports Server (NTRS)

Lanser, Wendy R.; Botha, Gavin J.; James, Kevin D.; Crowder, James P.; Schmitz, Fredric H. (Technical Monitor)

1994-01-01

The proposed paper presents flow visualization performed during experiments conducted on a full-scale F/A-18 aircraft in the 80- by 120-Foot Wind-Tunnel at NASA Ames Research Center. This investigation used both surface and off-surface flow visualization techniques to examine the flow field on the forebody, canopy, leading edge extensions (LEXs), and wings. The various techniques used to visualize the flow field were fluorescent tufts, flow cones treated with reflective material, smoke in combination with a laser light sheet, and a video imaging system. The flow visualization experiments were conducted over an angle of attack range from 20deg to 45deg and over a sideslip range from -10deg to 10deg. The results show regions of attached and separated flow on the forebody, canopy, and wings. Additionally, the vortical flow is clearly visible over the leading-edge extensions, canopy, and wings.

The influence of current speed and vegetation density on flow structure in two macrotidal eelgrass canopies

USGS Publications Warehouse

Lacy, Jessica R.; Wyllie-Echeverria, Sandy

2011-01-01

The influence of eelgrass (Zostera marina) on near-bed currents, turbulence, and drag was investigated at three sites in two eelgrass canopies of differing density and at one unvegetated site in the San Juan archipelago of Puget Sound, Washington, USA. Eelgrass blade length exceeded 1 m. Velocity profiles up to 1.5 m above the sea floor were collected over a spring-neap tidal cycle with a downward-looking pulse-coherent acoustic Doppler profiler above the canopies and two acoustic Doppler velocimeters within the canopies. The eelgrass attenuated currents by a minimum of 40%, and by more than 70% at the most densely vegetated site. Attenuation decreased with increasing current speed. The data were compared to the shear-layer model of vegetated flows and the displaced logarithmic model. Velocity profiles outside the meadows were logarithmic. Within the canopies, most profiles were consistent with the shear-layer model, with a logarithmic layer above the canopy. However, at the less-dense sites, when currents were strong, shear at the sea floor and above the canopy was significant relative to shear at the top of the canopy, and the velocity profiles more closely resembled those in a rough-wall boundary layer. Turbulence was strong at the canopy top and decreased with height. Friction velocity at the canopy top was 1.5–2 times greater than at the unvegetated, sandy site. The coefficient of drag CD on the overlying flow derived from the logarithmic velocity profile above the canopy, was 3–8 times greater than at the unvegetated site (0.01–0.023 vs. 2.9 × 10−3).

Turbulence considerations for comparing ecosystem exchange over old-growth and clear-cut stands for limited fetch and complex canopy flow conditions

Treesearch

Sonia Wharton; Matt Schroeder; Kyaw Tha Paw U; Matthias Falk; Ken Bible

2009-01-01

Carbon dioxide (CO2), water vapor, and energy fluxes were measured using eddy covariance (EC) methodology over three adjacent evergreen forests in southern Washington State to identify stand-level age-effects on ecosystem exchange. The sites represent Douglas-fir forest ecosystems at two contrasting successional stages: old-growth (OG) and early...

Can a simple dynamical system describe the interplay between drag and buoyancy in terrain-induced canopy flows?

NASA Astrophysics Data System (ADS)

De Roo, Frederik; Banerjee, Tirtha

2017-04-01

Under non-neutral conditions and in the presence of topography the dynamics of turbulent flow within a canopy is not yet completely understood. This has implications for the measurement of surface-atmosphere exchange by means of eddy-covariance. For example the measurement of carbon dioxide fluxes are strongly influenced if drainage flows happen during night, when the flow within the canopy decouples from the flow aloft. In the present work, we investigate the dynamics of terrain-induced turbulent flow within sloped canopies. We concentrate on the presence of oscillatory behavior in the flow variables in terms of switching of flow regimes by conducting linear stability analysis. We revisit and correct the simplified theory that exists in the literature, which is based on the interplay between the drag force and the buoyancy. We find that the simplified description of this dynamical system cannot exhibit the observed richness of the dynamics. To tackle the full spatiotemporal dynamical system theoretically is beyond the scope of this work, although we can make some qualitative arguments. Additionally, we make use of large-eddy simulation of a three-dimensional hill covered by a homogeneous forest and analyze phase synchronization behavior of the major terms in the momentum budget to explore the turbulent dynamics in more detail.

Canopy wake measurements using multiple scanning wind LiDARs

NASA Astrophysics Data System (ADS)

Markfort, C. D.; Carbajo Fuertes, F.; Iungo, V.; Stefan, H. G.; Porte-Agel, F.

2014-12-01

Canopy wakes have been shown, in controlled wind tunnel experiments, to significantly affect the fluxes of momentum, heat and other scalars at the land and water surface over distances of ˜O(1 km), see Markfort et al. (EFM, 2013). However, there are currently no measurements of the velocity field downwind of a full-scale forest canopy. Point-based anemometer measurements of wake turbulence provide limited insight into the extent and details of the wake structure, whereas scanning Doppler wind LiDARs can provide information on how the wake evolves in space and varies over time. For the first time, we present measurements of the velocity field in the wake of a tall patch of forest canopy. The patch consists of two uniform rows of 40-meter tall deciduous, plane trees, which border either side of the Allée de Dorigny, near the EPFL campus. The canopy is approximately 250 m long, and it is approximately 40 m wide, along the direction of the wind. A challenge faced while making field measurements is that the wind rarely intersects a canopy normal to the edge. The resulting wake flow may be deflected relative to the mean inflow. Using multiple LiDARs, we measure the evolution of the wake due to an oblique wind blowing over the canopy. One LiDAR is positioned directly downwind of the canopy to measure the flow along the mean wind direction and the other is positioned near the canopy to evaluate the transversal component of the wind and how it varies with downwind distance from the canopy. Preliminary results show that the open trunk space near the base of the canopy results in a surface jet that can be detected just downwind of the canopy and farther downwind dissipates as it mixes with the wake flow above. A time-varying recirculation zone can be detected by the periodic reversal of the velocity near the surface, downwind of the canopy. The implications of canopy wakes for measurement and modeling of surface fluxes will be discussed.

Canopy wake measurements using multiple scanning wind LiDARs

NASA Astrophysics Data System (ADS)

Markfort, Corey D.; Carbajo Fuertes, Fernando; Valerio Iungo, Giacomo; Stefan, Heinz; Porté-Agel, Fernando

2014-05-01

Canopy wakes have been shown, in controlled wind tunnel experiments, to significantly affect the fluxes of momentum, heat and other scalars at the land and water surface over distances of ~O(1 km), see Markfort et al. (EFM, 2013). However, there are currently no measurements of the velocity field downwind of a full-scale forest canopy. Point-based anemometer measurements of wake turbulence provide limited insight into the extent and details of the wake structure, whereas scanning Doppler wind LiDARs can provide information on how the wake evolves in space and varies over time. For the first time, we present measurements of the velocity field in the wake of a tall patch of forest canopy. The patch consists of two uniform rows of 35-meter tall deciduous, plane trees, which border either side of the Allée de Dorigny, near the EPFL campus. The canopy is approximately 250 m long, and it is 35 m wide, along the direction of the wind. A challenge faced while making field measurements is that the wind rarely intersects a canopy normal to the edge. The resulting wake flow may be deflected relative to the mean inflow. Using multiple LiDARs, we measure the evolution of the wake due to an oblique wind blowing over the canopy. One LiDAR is positioned directly downwind of the canopy to measure the flow along the mean wind direction and the other is positioned near the canopy to evaluate the transversal component of the wind and how it varies with downwind distance from the canopy. Preliminary results show that the open trunk space near the base of the canopy results in a surface jet that can be detected just downwind of the canopy and farther downwind dissipates as it mixes with the wake flow above. A time-varying recirculation zone can be detected by the periodic reversal of the velocity vector near the surface, downwind of the canopy. The implications of canopy wakes for measurement and modeling of surface fluxes will be discussed.

MODELING COUPLING OF EEL GRASS ZOSTRA MARINA AND WATER FLOW

EPA Science Inventory

Ecological effects caused by submerged aquatic vegetation not only depend on the plants and their morphology but also on the flow and transport patterns of dissolved and suspended constituents near the canopy. The height of the canopy is a major parameter in any quantitative an...

Dynamics of transpiration, sap flow and use of stored water in tropical forest canopy trees.

Treesearch

Frederick C. Meinzer; Shelley A. James; Guillermo Goldstein

2004-01-01

In large trees the daily onset of transpiration causes water to be withdrawn from internal storage compartments resulting in lags between changes in transpiration and sap flow at the base of the tree. We measured time courses of sap flow, hydraulic resistance, plant water potential and stomatal resistance in co-occuring tropical forest canopy trees with trunk diameters...

Aquatic insect emergence from headwater streams flowing through regeneration and mature forests in western Oregon

Treesearch

Robert Progar; Andrew R. Moldenke

2009-01-01

We examined the effect of canopy cover on adult aquatic insect emergence by collecting bi-weekly samples from twelve headwater stream reaches flowing either under a mature conifer canopy or streams flowing through ten-year-old regeneration in western Oregon from February to November 1997. Density and biomass generally followed a bimodal curve with peaks during early...

Influence of Forest-Canopy Morphology and Relief on Spectral Characteristics of Taiga Forests

NASA Astrophysics Data System (ADS)

Zhirin, V. M.; Knyazeva, S. V.; Eydlina, S. P.

2017-12-01

The article deals with the results of a statistical analysis reflecting tendencies (trends) of the relationship between spectral characteristics of taiga forests, indicators of the morphological structure of forest canopy and illumination of the territory. The study was carried out on the example of the model forest territory of the Priangarskiy taiga region of Eastern Siberia (Krasnoyarsk krai) using historical data (forest inventory 1992, Landsat 5 TM 16.06.1989) and the digital elevation model. This article describes a method for determining the quantitative indicator of morphological structure of forest canopy based on taxation data, and the authors propose to subdivide the morphological structure into high complexity, medium complexity, and relatively simple. As a result of the research, dependences of average values of spectral brightness in near and short-wave infrared channels of a Landsat 5 TM image for dark-coniferous, light-coniferous and deciduous forests from the degree of complexity of the forest-canopy structure are received. A high level of variance and maximum brightness average values are marked in green moss (hilocominosa) dark-coniferous and various-grass (larioherbosa) dark-coniferous forests and light-coniferous forests with a complex structure of canopy. The parvifoliate forests are characterized by high values of brightness in stands with a relatively simple structure of the canopy and by a small variance in brightness of any degree of the structure of the canopy complexity. The increase in brightness for the lit slopes in comparison with shaded ones in all stands with a difficult morphological canopy structure is revealed. However, the brightness values of the lit and shaded slopes do not differ for stands with a medium complexity of the structure. It is noted that, in addition to the indicator of the forest-canopy structure, the possible impact on increasing the variance of spectral brightness for the taxation plot has a variability of the slope ratio of "microslopes" inside the forest plot if it exceeds 60%.

Measurements of aerodynamic forces on unsteadily moving bluff parachute canopies

NASA Astrophysics Data System (ADS)

Cockrell, D. J.; Harwood, R. J.; Shen, C. Q.

1987-06-01

Equations which describe the unsteady motion of bluff bodies through fluids contain certain components, termed added mass coefficients, which can only be determined by experiment. From the solutions to such equations the ways in which the shapes of parachute canopies influence the frequency of their oscillatory motion in pitch and their corresponding damping rates are required. Although a full-scale parachute canopy descends through air, oscillating in pitch as it does, experiments necessary to determine these added mass coefficients have been performed under water, using for this purpose a large ship tank from the towing carriage of which the model parachute canopies were suspended. These experiments showed that the added mass coefficients for bluff parachute canopies differed appreciably from their corresponding potential flow values. The latter were obtained from the analysis of inviscid, fluid flow around regular shapes which were representative of those parachute canopies. The significance for the prediction of the parachute's dynamic behavior in pitch is outlined.

Parametrization of Drag and Turbulence for Urban Neighbourhoods with Trees

NASA Astrophysics Data System (ADS)

Krayenhoff, E. S.; Santiago, J.-L.; Martilli, A.; Christen, A.; Oke, T. R.

2015-08-01

Urban canopy parametrizations designed to be coupled with mesoscale models must predict the integrated effect of urban obstacles on the flow at each height in the canopy. To assess these neighbourhood-scale effects, results of microscale simulations may be horizontally-averaged. Obstacle-resolving computational fluid dynamics (CFD) simulations of neutrally-stratified flow through canopies of blocks (buildings) with varying distributions and densities of porous media (tree foliage) are conducted, and the spatially-averaged impacts on the flow of these building-tree combinations are assessed. The accuracy with which a one-dimensional (column) model with a one-equation (-) turbulence scheme represents spatially-averaged CFD results is evaluated. Individual physical mechanisms by which trees and buildings affect flow in the column model are evaluated in terms of relative importance. For the treed urban configurations considered, effects of buildings and trees may be considered independently. Building drag coefficients and length scale effects need not be altered due to the presence of tree foliage; therefore, parametrization of spatially-averaged flow through urban neighbourhoods with trees is greatly simplified. The new parametrization includes only source and sink terms significant for the prediction of spatially-averaged flow profiles: momentum drag due to buildings and trees (and the associated wake production of turbulent kinetic energy), modification of length scales by buildings, and enhanced dissipation of turbulent kinetic energy due to the small scale of tree foliage elements. Coefficients for the Santiago and Martilli (Boundary-Layer Meteorol 137: 417-439, 2010) parametrization of building drag coefficients and length scales are revised. Inclusion of foliage terms from the new parametrization in addition to the Santiago and Martilli building terms reduces root-mean-square difference (RMSD) of the column model streamwise velocity component and turbulent kinetic energy relative to the CFD model by 89 % in the canopy and 71 % above the canopy on average for the highest leaf area density scenarios tested: . RMSD values with the new parametrization are less than 20 % of mean layer magnitude for the streamwise velocity component within and above the canopy, and for above-canopy turbulent kinetic energy; RMSD values for within-canopy turbulent kinetic energy are negligible for most scenarios. The foliage-related portion of the new parametrization is required for scenarios with tree foliage of equal or greater height than the buildings, and for scenarios with foliage below roof height for building plan area densities less than approximately 0.25.

The Forest Canopy as a Temporally and Spatially Dynamic Ecosystem: Preliminary Results of Biomass Scaling and Habitat Use from a Case Study in Large Eastern White Pines (Pinus Strobus)

NASA Astrophysics Data System (ADS)

Martin, J.; Laughlin, M. M.; Olson, E.

2017-12-01

Canopy processes can be viewed at many scales and through many lenses. Fundamentally, we may wish to start by treating each canopy as a unique surface, an ecosystem unto itself. By doing so, we can may make some important observations that greatly influence our ability to scale canopies to landscape, regional and global scales. This work summarizes an ongoing endeavor to quantify various canopy level processes on individual old and large Eastern white pine trees (Pinus strobus). Our work shows that these canopies contain complex structures that vary with height and as the tree ages. This phenomenon complicates the allometric scaling of these large trees using standard methods, but detailed measurements from within the canopy provided a method to constrain scaling equations. We also quantified how these canopies change and respond to canopy disturbance, and documented disproportionate variation of growth compared to the lower stem as the trees develop. Additionally, the complex shape and surface area allow these canopies to act like ecosystems themselves; despite being relatively young and more commonplace when compared to the more notable canopies of the tropics and the Pacific Northwestern US. The white pines of these relatively simple, near boreal forests appear to house various species including many lichens. The lichen species can cover significant portions of the canopy surface area (which may be only 25 to 50 years old) and are a sizable source of potential nitrogen additions to the soils below, as well as a modulator to hydrologic cycles by holding significant amounts of precipitation. Lastly, the combined complex surface area and focused verticality offers important habitat to numerous animal species, some of which are quite surprising.

A Backward-Lagrangian-Stochastic Footprint Model for the Urban Environment

NASA Astrophysics Data System (ADS)

Wang, Chenghao; Wang, Zhi-Hua; Yang, Jiachuan; Li, Qi

2018-02-01

Built terrains, with their complexity in morphology, high heterogeneity, and anthropogenic impact, impose substantial challenges in Earth-system modelling. In particular, estimation of the source areas and footprints of atmospheric measurements in cities requires realistic representation of the landscape characteristics and flow physics in urban areas, but has hitherto been heavily reliant on large-eddy simulations. In this study, we developed physical parametrization schemes for estimating urban footprints based on the backward-Lagrangian-stochastic algorithm, with the built environment represented by street canyons. The vertical profile of mean streamwise velocity is parametrized for the urban canopy and boundary layer. Flux footprints estimated by the proposed model show reasonable agreement with analytical predictions over flat surfaces without roughness elements, and with experimental observations over sparse plant canopies. Furthermore, comparisons of canyon flow and turbulence profiles and the subsequent footprints were made between the proposed model and large-eddy simulation data. The results suggest that the parametrized canyon wind and turbulence statistics, based on the simple similarity theory used, need to be further improved to yield more realistic urban footprint modelling.

The Effect of Stem- and Canopy-Scale Turbulence on Sediment Dynamics within Submerged Vegetation.

NASA Astrophysics Data System (ADS)

Tinoco, R. O.; San Juan Blanco, J. E.; Prada, A. F.

2017-12-01

Stem- and canopy-scale turbulence generated by submerged patches of vegetation plays a paramount role on sediment transport within aquatic ecosystems such as wetlands, marshes, mangrove forests, and coastal regions, as dense patches dampen velocities and mean bed stresses within the plants, while also increasing turbulence intensity through stem-scale wakes and canopy-scale eddies. To explore the interactions between such processes, laboratory experiments are conducted using rigid cylinders placed in a staggered configuration as vegetation elements, embedded on a non-cohesive sediment bed in a racetrack flume. Quantitative imaging is used to characterize the flow field and the associated suspended sediment concentration throughout the water column at different submergence ratios, defined as the ratio between water depth, H, and plant height, h, to investigate the role of canopy-scale eddies formed at the top of the canopy, and their interaction with near-bed flow structures, on sediment dynamics. Turbulent kinetic energy, turbulent intensity, and Reynolds stresses are quantified within and above the array to clearly identify the contributions from bed generated turbulence and vegetation generated turbulence, at both stem- and canopy-scale, as submergence ratio increases from emergent, H/h=1, to fully submerged, H/h=5, conditions. The experimental results are compared with transport models to highlight the need for a multi-scale approach to represent flow-vegetation-sediment interactions.

Low Reynolds number flow near tiny leaves, stems, and trichomes

NASA Astrophysics Data System (ADS)

Strickland, Christopher; Pasour, Virginia; Miller, Laura

2016-11-01

In terrestrial and aquatic environments such as forest canopies, grass fields, and seagrass beds, the density and shape of trunks, branches, stems, leaves and trichomes (the hairs or fine outgrowths on plants) can drastically alter both the average wind speed and profile through these environments and near each plant. While many studies of flow in these environments have focused on bulk properties of the flow at scales on the order of meters, the low Reynolds number flow close to vegetative structures is especially complex and relevant to nutrient exchange. Using three-dimensional immersed boundary simulations, we resolve the flow around trichomes and small leaves and quantify velocities, shear stresses, and mixing while varying the height and density of idealized structures. National Science Foundation Grant DMS-1127914 to the Statistical and Applied Mathematical Sciences Institute, and the Army Research Office.

Light transmittance estimates in a longleaf pine woodland

Treesearch

Michael A. Battaglia; Robert J. Mitchell; Paul P. Mou; Stephen D. Pecot

2003-01-01

While the importance of canopy structure in open woodlands and savannas on regulating the flow of energy and matter is well known, few studies have investigated how variation in overstory abundance influences canopy light transmission and the extent that estimates vary in their ability to characterize the light environment in these ecosystems. Canopy light...

Bio-inspired canopies for the reduction of roughness noise

NASA Astrophysics Data System (ADS)

Clark, Ian A.; Daly, Conor A.; Devenport, William; Alexander, W. Nathan; Peake, Nigel; Jaworski, Justin W.; Glegg, Stewart

2016-12-01

This work takes inspiration from the structure of the down covering the flight feathers of larger species of owls, which contributes to their ability to fly almost silently at frequencies above 1.6 kHz. Microscope photographs of the down show that it consists of hairs that form a structure similar to that of a forest. The hairs initially rise almost perpendicular to the feather surface but then bend over in the flow direction to form a canopy with an open area ratio of about 70 percent. Experiments have been performed to examine the noise radiated by a large open area ratio canopy suspended above a surface. The canopy is found to dramatically reduce pressure fluctuations on the underlying surface. While the canopy can produce its own sound, particularly at high frequencies, the reduction in surface pressure fluctuations can reduce the noise scattered from an underlying rough surface at lower frequencies. A theoretical model is developed which characterizes the mechanism of surface pressure reduction as a result of the mixing layer instability of flow over forest canopies.

A Grid of Fine Wire Thermocouples to Study the Spatial Coherence of Turbulence within Katabatic Flow through a Vineyard Canopy

NASA Astrophysics Data System (ADS)

Everard, K.; Christen, A.; Sturman, A.; Skaloud, P.

2016-12-01

Knowledge of the dynamics and thermodynamics of katabatic flow is relevant in vineyards, where grapevines are sensitive to temperature changes (frost protection and cooling). Basic understanding of the occurrence and evolution of, and turbulence within, katabatic flow is well known over bare slopes. However, little work has been completed to extend this understanding to mid-sized canopies and how the presence of a canopy affects the turbulent exchange of momentum and heat within the flow. Measurements were carried out over a 6° vineyard slope near Oliver, BC, Canada in the Okanagan Valley between July 5 and July 22, 2016. The set-up consisted of an array of five vertically arranged CSAT 3D (Campbell Scientific, Inc.) ultrasonic anemometers at z = 0.45 m, 0.90 m, 1.49 m, 2.34 m, and 4.73 m above ground level (AGL), and a 2-D grid of 40 Type-E (copper-constantan) fine-wire thermocouples (FWTC) arranged at the same heights as the CSAT 3D array on 8 masts extending in the upslope (flow) direction at locations x = 0.0 m (CSAT 3D tower), 0.5 m, 1.0 m, 2.0 m, 4.0 m, 8.0 m, 16.0 m, and 32.0 m. The FWTC array formed a sheet of 40 sampling points in the upslope-vertical plane. The height of the grapevine canopy (h) was approximately 2 m AGL, and rows were aligned along the local slope direction with a row spacing of 2.45 m. CSAT-3s were sampled at 60 Hz with 20 Hz data recording, the FWTCs were sampled at 2 Hz, all synchronized by a data logger. Katabatic flow was observed on several nights during the campaign, with a wind speed maximum located within the canopy. This contribution will focus on the measurement techniques, combining ultrasonic anemometer data with the spatially synchronized FWTC array using image process techniques. We identify the dynamics and structure of the katabatic flow, relevant for heat exchange, using the spatial coherence of the temperature field given by the FWTC array. Improved knowledge of the vertical structure and the dynamics of katabatic flow within canopies allows better understanding of how it influences mass transport and cold-air pooling within the immediate grapevine canopy. Such understanding allows for better vineyard planning and management, as well as parameterizing model approaches to assist in forecasting the effect of such events on the thermal environment.

Large-Eddy Simulation of Coherent Flow Structures within a Cubical Canopy

NASA Astrophysics Data System (ADS)

Inagaki, Atsushi; Castillo, Marieta Cristina L.; Yamashita, Yoshimi; Kanda, Manabu; Takimoto, Hiroshi

2012-02-01

Instantaneous flow structures "within" a cubical canopy are investigated via large-eddy simulation. The main topics of interest are, (1) large-scale coherent flow structures within a cubical canopy, (2) how the structures are coupled with the turbulent organized structures (TOS) above them, and (3) the classification and quantification of representative instantaneous flow patterns within a street canyon in relation to the coherent structures. We use a large numerical domain (2,560 m × 2,560 m × 1,710 m) with a fine spatial resolution (2.5 m), thereby simulating a complete daytime atmospheric boundary layer (ABL), as well as explicitly resolving a regular array of cubes (40 m in height) at the surface. A typical urban ABL is numerically modelled. In this situation, the constant heat supply from roof and floor surfaces sustains a convective mixed layer as a whole, but strong wind shear near the canopy top maintains the surface layer nearly neutral. The results reveal large coherent structures in both the velocity and temperature fields "within" the canopy layer. These structures are much larger than the cubes, and their shapes and locations are shown to be closely related to the TOS above them. We classify the instantaneous flow patterns in a cavity, specifically focusing on two characteristic flow patterns: flushing and cavity-eddy events. Flushing indicates a strong upward motion, while a cavity eddy is characterized by a dominant vortical motion within a single cavity. Flushing is clearly correlated with the TOS above, occurring frequently beneath low-momentum streaks. The instantaneous momentum and heat transport within and above a cavity due to flushing and cavity-eddy events are also quantified.

Structural complexity and land-surface energy exchange along a gradient from arctic tundra to boreal forest

USGS Publications Warehouse

Thompson, C.; Beringer, J.; Chapin, F. S.; McGuire, A.D.

2004-01-01

Question: Current climate changes in the Alaskan Arctic, which are characterized by increases in temperature and length of growing season, could alter vegetation structure, especially through increases in shrub cover or the movement of treeline. These changes in vegetation structure have consequences for the climate system. What is the relationship between structural complexity and partitioning of surface energy along a gradient from tundra through shrub tundra to closed canopy forest? Location: Arctic tundra-boreal forest transition in the Alaskan Arctic. Methods: Along this gradient of increasing canopy complexity, we measured key vegetation characteristics, including community composition, biomass, cover, height, leaf area index and stem area index. We relate these vegetation characteristics to albedo and the partitioning of net radiation into ground, latent, and sensible heating fluxes. Results: Canopy complexity increased along the sequence from tundra to forest due to the addition of new plant functional types. This led to non-linear changes in biomass, cover, and height in the understory. The increased canopy complexity resulted in reduced ground heat fluxes, relatively conserved latent heat fluxes and increased sensible heat fluxes. The localized warming associated with increased sensible heating over more complex canopies may amplify regional warming, causing further vegetation change in the Alaskan Arctic.

Canopy structural complexity influences forest canopy reflectance: linking terrestrial lidar with Landsat observations

NASA Astrophysics Data System (ADS)

Hardiman, B. S.; Atkins, J.; Dahlin, K.; Fahey, R. T.; Gough, C. M.

2016-12-01

Canopy physical structure - leaf quantity and arrangement - strongly affects light interception and distribution. As such, canopy physical structure is a key driver of forest carbon (C) dynamics. Terrestrial lidar systems (TLS) provide spatially explicit, quantitative characterizations of canopy physical structure at scales commensurate with plot-scale C cycling processes. As an example, previous TLS-based studies established that light use efficiency is positively correlated with canopy physical structure, influencing the trajectory of net primary production throughout forest development. Linking TLS measurements of canopy structure to multispectral satellite observations of forest canopies may enable scaling of ecosystem C cycling processes from leaves to continents. We will report on our study relating a suite of canopy structural metrics to well-established remotely sensed measurements (NDVI, EVI, albedo, tasseled cap indices, etc.) which are indicative of important forest characteristics (leaf area, canopy nitrogen, light interception, etc.). We used Landsat data, which provides observations at 30m resolution, a scale comparable to that of TLS. TLS data were acquired during 2009-2016 from forest sites throughout Eastern North America, comprised primarily of NEON and Ameriflux sites. Canopy physical structure data were compared with contemporaneous growing-season Landsat data. Metrics of canopy physical structure are expected to covary with forest composition and dominant PFT, likely influencing interaction strength between TLS and Landsat canopy metrics. More structurally complex canopies (those with more heterogeneous distributions of leaf area) are expected to have lower albedo, suggesting greater canopy light absorption (higher fAPAR) than simpler canopies. We expect that vegetation indices (NDVI, EVI) will increase with TLS metrics of spatial heterogeneity, and not simply quantity, of leaves, supporting our hypothesis that canopy light absorption is dependent on both leaf quantity and arrangement. Relating satellite observations of canopy properties to TLS metrics of canopy physical structure represents an important advance for modelling canopy energy balance and forest C cycling processes at large spatial scales.

Effect of canopy and topography induced wakes on land-atmosphere fluxes of momentum and scalars

NASA Astrophysics Data System (ADS)

Markfort, C. D.; Zhang, W.; Porté-Agel, F.; Stefan, H. G.

2012-04-01

Wakes shed from natural and anthropogenic landscape features affect land-atmosphere fluxes of momentum and scalars, including water vapor and trace gases (e.g. CO2). Canopies and bluff bodies, such as forests, buildings and topography, cause boundary layer flow separation, and lead to a break down of standard Monin-Obukhov similarity relationships in the atmospheric boundary layer (ABL). Wakes generated by these land surface features persist for significant distances (>100 typical length scales) and affect a large fraction of the Earth's terrestrial surface. This effect is currently not accounted for in land-atmosphere models, and little is known about how heterogeneity of wake-generating features affect land surface fluxes. Additionally flux measurements, made in wake-affected regions, do not satisfy the homogeneous flow requirements for the standard eddy correlation (EC) method. This phenomenon, often referred to as wind sheltering, has been shown to affect momentum and kinetic energy fluxes at the lake-atmosphere interface (Markfort et al. 2010). This presentation will highlight results from controlled wind tunnel experiments of neutral and thermally stratified boundary layers, using particle image velocimetry (PIV) and custom x-wire/cold-wire anemometry, to understand how the physical structure of upstream bluff bodies and porous canopies as well as how thermal stability affect the flow separation zone, boundary layer recovery and surface fluxes. We have found that there is a nonlinear relationship between canopy length/porosity and flow separation downwind of a canopy to clearing transition. Results will provide the basis for new parameterizations to account for wake effects on land-atmosphere fluxes and corrections for the EC measurements over open fields, lakes, and wetlands. Key words: Atmospheric boundary layer; Wakes; Stratification; Land-Atmosphere Parameterization; Canopy

Surface wave energy absorption by a partially submerged bio-inspired canopy.

PubMed

Nové-Josserand, C; Castro Hebrero, F; Petit, L-M; Megill, W M; Godoy-Diana, R; Thiria, B

2018-03-27

Aquatic plants are known to protect coastlines and riverbeds from erosion by damping waves and fluid flow. These flexible structures absorb the fluid-borne energy of an incoming fluid by deforming mechanically. In this paper we focus on the mechanisms involved in these fluid-elasticity interactions, as an efficient energy harvesting system, using an experimental canopy model in a wave tank. We study an array of partially-submerged flexible structures that are subjected to the action of a surface wave field, investigating in particular the role of spacing between the elements of the array on the ability of our system to absorb energy from the flow. The energy absorption potential of the canopy model is examined using global wave height measurements for the wave field and local measurements of the elastic energy based on the kinematics of each element of the canopy. We study different canopy arrays and show in particular that flexibility improves wave damping by around 40%, for which half is potentially harvestable.

Experimental evaluation of the significance of the pressure transport term for the Turbulence Kinetic Energy Budget across contrasting forest architectures

NASA Astrophysics Data System (ADS)

Ehrnsperger, Laura; Wunder, Tobias; Thomas, Christoph

2017-04-01

Forests are one of the dominant vegetation types on Earth and are an important sink for carbon on our planet. Forests are special ecosystems due to their great canopy height und complex architecture consisting of a subcanopy and a canopy layer, which changes the mechanisms of turbulent exchange within the plant canopy. To date, the sinks and sources of turbulence in forest canopies are not completely understood, especially the role of the pressure transport remains unclear. The INTRAMIX experiment was conducted in a mountainous Norway spruce (Picea abies) forest at the Fluxnet Waldstein site (DE-Bay) in Bavaria, Germany, for a period of 10 weeks in order to experimentally evaluate the significance of the pressure transport to the TKE budget for the first time. The INTRAMIX data of the dense mountain forest was compared to observations from a sparse Ponderosa pine (Pinus ponderosa) stand in Oregon, USA, to study the influence of forest architecture. We hypothesized that the pressure transport is more important in dense forest canopies as the crown decouples the subcanopy from the buoyancy- and shear-driven flow above the canopy. It is also investigated how atmospheric stability influences the TKE budget. Based upon model results from literature we expect the pressure transport to act as a source for TKE especially under free convective and unstable dynamic stability. Results to date indicate that pressure transport is most important in the subcanopy with decreasing magnitude with increasing height. Nevertheless, pressure transport is a continuous source of TKE above the canopy, while in the canopy and subcanopy layer pressure transport acts both as a sink and source term for TKE. In the tree crown layer pressure transport is a source in the morning and afternoon hours and acts as a sink during the evening, while in the subcanopy pressure transport is a source around noon and during the night and acts as a sink in the early morning and afternoon hours. This complementary pattern suggests that the pressure transport is an important means for exchanging TKE across canopy layers.

Evaluation of wind regimes and their impact on vertical mixing and coupling in a moderately dense forest

NASA Astrophysics Data System (ADS)

Wunder, Tobias; Ehrnsperger, Laura; Thomas, Christoph

2017-04-01

In the last decades much attention has been devoted to improving our understanding of organized motions in plant canopies. Particularly the impact of coherent structures on turbulent flows and vertical mixing in near-neutral conditions has been the focus of many experimental and modeling studies. Despite this progress, the weak-wind subcanopy airflow in concert with stable or weak-wind above-canopy conditions remains poorly understood. In these conditions, evidence is mounting that larger-scale motions, so called sub-meso motions which occupy time scales from minutes to hours and spatial scales from tens of meters to kilometers, dominate transport and turbulent mixing particularly in the subcanopy, because of generally weaker background flow as a result of the enhanced friction due to the plant material. We collected observations from a network of fast-response sensor across the vertical and horizontal dimensions during the INTRAMIX experiment at the Fluxnet site Waldstein/ Weidenbrunnen (DE-Bay) in a moderately dense Norway spruce (Picea Abies) forest over a period of ten weeks. Its main goal was to investigate the role of the submeso-structures on the turbulent wind field and the mixing mechanisms including coherent structures. In a first step, coupling regimes differentiating between weak and strong flows and day- and nighttime-conditions are determined. Subsequently, each of the regimes is analyzed for its dominant flow dynamics identified by wavelet analysis. It is hypothesized that strong vertical wind directional shear does not necessarily indicate a decoupling of vertical layers, but on the contrary may create situations of significant coupling of the sub-canopy with the canopy layers above. Moreover, rapid changes of wind direction or even reversals may generate substantial turbulence and induce intermittent coupling on a variety of time scales. The overarching goal is to improve diagnostics for vertical mixing in plant canopies incorporating turbulence and submeso-motions and to develop a classification of flow modes capable of representing the main driving mechanisms of mixing in forest canopies.

The electrostatics of parachutes

NASA Astrophysics Data System (ADS)

Yu, Li; Ming, Xiao

2007-12-01

In the research of parachute, canopy inflation process modeling is one of the most complicated tasks. As canopy often experiences the largest deformations and loadings during a very short time, it is of great difficulty for theoretical analysis and experimental measurements. In this paper, aerodynamic equations and structural dynamics equations were developed for describing parachute opening process, and an iterative coupling solving strategy incorporating the above equations was proposed for a small-scale, flexible and flat-circular parachute. Then, analyses were carried out for canopy geometry, time-dependent pressure difference between the inside and outside of the canopy, transient vortex around the canopy and the flow field in the radial plane as a sequence in opening process. The mechanism of the canopy shape development was explained from perspective of transient flow fields during the inflation process. Experiments of the parachute opening process were conducted in a wind tunnel, in which instantaneous shape of the canopy was measured by high velocity camera and the opening loading was measured by dynamometer balance. The theoretical predictions were found in good agreement with the experimental results, validating the proposed approach. This numerical method can improve the situation of strong dependence of parachute research on wind tunnel tests, and is of significance to the understanding of the mechanics of parachute inflation process.

High-Resolution Three-Dimensional Structural Data Quantify the Impact of Photoinhibition on Long-Term Carbon Gain in Wheat Canopies in the Field1[OPEN

PubMed Central

Burgess, Alexandra J.; Retkute, Renata; Pound, Michael P.; Foulkes, John; Preston, Simon P.; Jensen, Oliver E.; Pridmore, Tony P.; Murchie, Erik H.

2015-01-01

Photoinhibition reduces photosynthetic productivity; however, it is difficult to quantify accurately in complex canopies partly because of a lack of high-resolution structural data on plant canopy architecture, which determines complex fluctuations of light in space and time. Here, we evaluate the effects of photoinhibition on long-term carbon gain (over 1 d) in three different wheat (Triticum aestivum) lines, which are architecturally diverse. We use a unique method for accurate digital three-dimensional reconstruction of canopies growing in the field. The reconstruction method captures unique architectural differences between lines, such as leaf angle, curvature, and leaf density, thus providing a sensitive method of evaluating the productivity of actual canopy structures that previously were difficult or impossible to obtain. We show that complex data on light distribution can be automatically obtained without conventional manual measurements. We use a mathematical model of photosynthesis parameterized by field data consisting of chlorophyll fluorescence, light response curves of carbon dioxide assimilation, and manual confirmation of canopy architecture and light attenuation. Model simulations show that photoinhibition alone can result in substantial reduction in carbon gain, but this is highly dependent on exact canopy architecture and the diurnal dynamics of photoinhibition. The use of such highly realistic canopy reconstructions also allows us to conclude that even a moderate change in leaf angle in upper layers of the wheat canopy led to a large increase in the number of leaves in a severely light-limited state. PMID:26282240

Parameterizing Urban Canopy Layer transport in an Lagrangian Particle Dispersion Model

NASA Astrophysics Data System (ADS)

Stöckl, Stefan; Rotach, Mathias W.

2016-04-01

The percentage of people living in urban areas is rising worldwide, crossed 50% in 2007 and is even higher in developed countries. High population density and numerous sources of air pollution in close proximity can lead to health issues. Therefore it is important to understand the nature of urban pollutant dispersion. In the last decades this field has experienced considerable progress, however the influence of large roughness elements is complex and has as of yet not been completely described. Hence, this work studied urban particle dispersion close to source and ground. It used an existing, steady state, three-dimensional Lagrangian particle dispersion model, which includes Roughness Sublayer parameterizations of turbulence and flow. The model is valid for convective and neutral to stable conditions and uses the kernel method for concentration calculation. As most Lagrangian models, its lower boundary is the zero-plane displacement, which means that roughly the lower two-thirds of the mean building height are not included in the model. This missing layer roughly coincides with the Urban Canopy Layer. An earlier work "traps" particles hitting the lower model boundary for a recirculation period, which is calculated under the assumption of a vortex in skimming flow, before "releasing" them again. The authors hypothesize that improving the lower boundary condition by including Urban Canopy Layer transport could improve model predictions. This was tested herein by not only trapping the particles, but also advecting them with a mean, parameterized flow in the Urban Canopy Layer. Now the model calculates the trapping period based on either recirculation due to vortex motion in skimming flow regimes or vertical velocity if no vortex forms, depending on incidence angle of the wind on a randomly chosen street canyon. The influence of this modification, as well as the model's sensitivity to parameterization constants, was investigated. To reach this goal, the model was initialized and compared with meteorological and SF6 tracer measurements from the Basel UrBan Boundary Layer Experiment (BUBBLE). The proposed modification does not improve the model's agreement with concentration observations, even though the trapping time shows promising agreement with measurements. Additionally, the modification's influence is smaller than those of different turbulence profiles, zero-plane displacement height and Roughness Sublayer height.

Turbulent mixing and fluid transport within Florida Bay seagrass meadows

NASA Astrophysics Data System (ADS)

Hansen, Jennifer C. R.; Reidenbach, Matthew A.

2017-10-01

Seagrasses serve an important function in the ecology of Florida Bay, providing critical nursery habitat and a food source for a variety of organisms. They also create significant benthic structure that induces drag, altering local hydrodynamics that can influence mixing and nutrient dynamics. Thalassia testudinum seagrass meadows were investigated to determine how shoot density and morphometrics alter local wave conditions, the generation of turbulence, and fluid exchange above and within the canopy. Sparsely vegetated and densely vegetated meadows were monitored, with shoot densities of 259 ± 26 and 484 ± 78 shoots m-2, respectively. The temporal and spatial structure of velocity and turbulence were measured using acoustic Doppler velocimeters and an in situ particle image velocimetry (PIV) system positioned both above and within the seagrass canopy. The retention of fluid within the canopy was determined by examining e-folding times calculated from the concentration curves of dye plumes released within the seagrass canopy. Results show that a shear layer with an inflection point develops at the top of the seagrass canopy, which generates instabilities that impart turbulence into the seagrass meadow. Compared to the overlying water column, turbulence was enhanced within the sparse canopy due to flow interaction with the seagrass blades, but reduced within the dense canopy. Wave generated oscillatory motion penetrated deeper into the canopy than unidirectional currents, enhancing fluid exchange. Both shoot density and the relative magnitude of wave- versus current-driven flow conditions were found to be important controls on turbulent exchange of water masses across the canopy-water interface.

The plume also rises: trajectories of pheromone plumes issuing from point sources in an orchard canopy at night.

PubMed

Girling, Robbie D; Higbee, Bradley S; Cardé, Ring T

2013-09-01

The trajectories of pheromone plumes in canopied habitats, such as orchards, have been little studied. We documented the capture of male navel orangeworm moths, Amyelois transitella, in female-baited traps positioned at 5 levels, from ground level to the canopy top, at approximately 6 m above ground, in almond orchards. Males were captured in similar proportions at all levels, suggesting that they do not favor a particular height during ranging flight. A 3-D sonic anemometer was used to establish patterns of wind flow and temperature at 6 heights from 2.08 to 6.65 m in an almond orchard with a 5 m high canopy, every 3 h over 72 h. The horizontal velocity of wind flow was highest above the canopy, where its directionality also was the most consistent. During the time of A. transitella mating (0300-0600), there was a net vertical displacement upward. Vertical buoyancy combined with only minor reductions in the distance that plumes will travel in the lower compared to the upper canopy suggest that the optimal height for release of pheromone from high-release rate sources, such as aerosol dispensers (“puffers”), that are deployed at low densities (e.g., 3 per ha.) would be at mid or low in the canopy, thereby facilitating dispersion of disruptant throughout the canopy. Optimal placement of aerosol dispensers will vary with the behavioral ecology of the target pest; however, our results suggest that current protocols, which generally propose dispenser placement in the upper third of the canopy, should be reevaluated.

Examining conifer canopy structural complexity across forest ages and elevations with LiDAR data

Treesearch

Van R. Kane; Jonathan D. Bakker; Robert J. McGaughey; James A. Lutz; Rolf F. Gersonde; Jerry F. Franklin

2010-01-01

LiDAR measurements of canopy structure can be used to classify forest stands into structural stages to study spatial patterns of canopy structure, identify habitat, or plan management actions. A key assumption in this process is that differences in canopy structure based on forest age and elevation are consistent with predictions from models of stand development. Three...

The role of stable isotopes in understanding rainfall interception processes: a review

EPA Science Inventory

The isotopic composition of water transmitted by the canopy as throughfall or stemflow reflects important hydrologic processes occurring in the canopy. A synthesis of the literature shows that complex spatiotemporal variations of isotopic composition are created by canopy interce...

Organized turbulent motions in a hedgerow vineyard: effect of evolving canopy structure

NASA Astrophysics Data System (ADS)

Vendrame, Nadia; Tezza, Luca; Tha Paw U, Kyaw; Pitacco, Andrea

2017-04-01

Vegetation-atmosphere exchanges are determined by functional and structural properties of the plants together with environmental forcing. However, a fundamental aspect is the interaction of the canopy with the lower atmosphere. The vegetation deeply alters the composition and physical properties of the air flow, exchanging energy, matter and momentum with it. These processes take place in the bottom part of the atmospheric boundary layer where turbulence is the main mechanism transporting within-canopy air towards the mid- and upper atmospheric boundary layer and vice versa. Canopy turbulence is highly influenced by vegetation drag elements, determining the vertical profile of turbulent moments within the canopy. Canopies organized in rows, like vineyards, show peculiar turbulent transport dynamics. In addition, the morphological structure (phenology) of the vineyard is greatly variable seasonally, shifting from an empty canopy during vine dormancy to dense foliage in summer. The understanding of the canopy ventilation regime is related to several practical applications in vineyard management. For example, within-canopy turbulent motion is very important to predict small particles dispersion, like fungal spores, and minimize infection studying the effect on leaf wetness duration. Our study aims to follow the continuous evolution of turbulence characteristics and canopy structure during the growing season of a hedgerow vineyard, from bud break to fully developed canopy. The field experiment was conducted in a flat extensive vineyard in North-Eastern Italy, using a vertical array of five synchronous sonic anemometers within and above the canopy. Turbulent flow organization was greatly influenced by canopy structure. Turbulent coherent structures involved in momentum transport have been investigated using the classical quadrant analysis and a novel approach to identify dominant temporal scales. Momentum transport in the canopy was dominated by downward gusts showing increasing importance throughout the growing season. At the same time, transport intermittency increased with developing leaf density. The contribution by interaction terms, acting opposite to downward momentum flux, increased in the lower canopy. The analysis of event time scales revealed that momentum transport in the vineyard was dominated by sweeps of 2-4 s duration and ejections of 4-6 s duration, which can be summed to estimate an average duration of dominating coherent structures in the order of 6-10 s. The evolution of canopy morphology did not have any clear influence on structure duration.

Experimental investigation of the effect of Reynolds number on flow structures in the wake of a circular parachute canopy

NASA Astrophysics Data System (ADS)

Jin, Zhe-Yan; Pasqualini, Sylvio; Qin, Bo

2014-06-01

In the present study, an experimental study was conducted to characterize the effect of Reynolds number on flow structures in the turbulent wake of a circular parachute canopy by utilizing stereoscopic particle image velocimetry (Stereo-PIV) technique. The parachute model tested in the present study was attached by 28 nylon suspension lines and placed horizontally at the test section center of the wind tunnel. The obtained results showed that with the increase of Reynolds number, the intensities of the vortices near the downstream region of the canopy skirt were found to increase accordingly. However, the increase of Reynolds number did not result in a significant change in ensembleaveraged normalized x-component of the velocity, ensembleaveraged normalized vorticity, normalized Reynolds stress, and normalized turbulent kinetic energy distributions in the turbulent wake of the circular parachute canopy. The obtained results are very useful to further our understanding about the unsteady aerodynamics in the wake of flexible circular parachute canopies and to constitute a reference for CFD computation.

Tracking forest canopy dynamics from an automated proximal hyperspectral monitoring system: linking remote sensing observations to leaf level photosynthetic processes

NASA Astrophysics Data System (ADS)

Woodgate, W.; van Gorsel, E.; Hughes, D.; Suarez, L.; Cabello-Leblic, A.; Held, A. A.; Norton, A.; Dempsey, R.

2017-12-01

To better understand the vegetation response to climate extremes we have developed a fully automated hyperspectral and thermal monitoring system installed on a flux tower at a mature Eucalypt forest site - Tumbarumba, Australia. The automated system bridges spatial, spectral and temporal scales between satellite and in situ observations. Here, we have been acquiring high resolution panoramic hyperspectral and thermal images of the forest canopy three times per day since mid-2014.A specific focus of the work to date has been linking light use efficiency (LUE) as measured by the flux tower to remote sensing observations from the leaf, to crown, to canopy scale. Specifically, targeted field campaigns were conducted in 2016 to establish the interrelationship between structure, function, and spectra. At the leaf level destructive sampling to quantify photosynthetic pigments was conducted to pick apart the mechanisms contributing to photosynthetic processes of non-photochemical quenching and the resultant changes in observed leaf spectra. At the crown level, Terrestrial Laser Scanning data was used to derive canopy structural information, enabling distance to crown and crown foliage density to be calculated to a fine degree of detail. This information is critical for correcting attenuation of the thermal signal from atmospheric transmission, and to distinguish the relative foliage-to-soil contribution to the thermal and hyperspectral imagery. Ancillary data streams from sap flow and dendrometer devices serve to link leaf, crown and canopy observations.Preliminary results of the leaf and crown level relationships between function and spectra will be discussed. We will demonstrate that operating in a tall canopy (40m) forest can lead to additional complexities. We have found the relationship strength between traditional remote sensing LUE proxies and photosynthetic proxies derived from pigments varies strongly with canopy height and pigment pool size. Additionally, the significance of the relationship between some leaf pigments and spectra hinged upon the inclusion of juvenile or unhealthy leaf samples, which were not representative of the canopy. This has implications for temporal scaling of remote sensing proxies from diurnal to seasonal time frames.

The TurbEFA Field Experiment—Measuring the Influence of a Forest Clearing on the Turbulent Wind Field

NASA Astrophysics Data System (ADS)

Queck, Ronald; Bernhofer, Christian; Bienert, Anne; Schlegel, Fabian

2016-09-01

Forest ecosystems play an important role in the interaction between the land surface and the atmosphere. Measurements and modelling efforts have revealed significant uncertainties in state-of-the-art flux assessments due to spatial inhomogeneities in the airflow and land surface. Here, a field experiment is used to describe the turbulent flow across a typical Central European forest clearing. A three-dimensional model of the inhomogeneous forest stand was developed using an innovative approach based on terrestrial laser-scanner technology. The comparison of the wind statistics of two measurement campaigns (5 and 12 months long) showed the spatial and temporal representativeness of the ultrasonic anemometer measurements within the canopy. An improved method for the correction of the vertical velocity enables the distinction between the instrumental offsets and the vertical winds due to the inclination of the instrument. Despite a 13 % fraction of deciduous plants within the otherwise evergreen canopy, the effects of phenological seasons on the velocity profiles were small. The data classified according to the wind speed revealed the intermittent nature of recirculating air in the clearing. Furthermore, the development of sub-canopy wind-speed maxima is explained by considering the velocity moments and the momentum equation (including measurements of the local pressure gradient). Clearings deflect the flow downward and feed the sub-canopy flow, i.e., advective fluxes, according to wind speed and, likely, clearing size, whereas local pressure gradients play an important role in the development of sub-canopy flow. The presented dataset is freely available at the project homepage.

Comparison of Aerial and Terrestrial Remote Sensing Techniques for Quantifying Forest Canopy Structural Complexity and Estimating Net Primary Productivity

NASA Astrophysics Data System (ADS)

Fahey, R. T.; Tallant, J.; Gough, C. M.; Hardiman, B. S.; Atkins, J.; Scheuermann, C. M.

2016-12-01

Canopy structure can be an important driver of forest ecosystem functioning - affecting factors such as radiative transfer and light use efficiency, and consequently net primary production (NPP). Both above- (aerial) and below-canopy (terrestrial) remote sensing techniques are used to assess canopy structure and each has advantages and disadvantages. Aerial techniques can cover large geographical areas and provide detailed information on canopy surface and canopy height, but are generally unable to quantitatively assess interior canopy structure. Terrestrial methods provide high resolution information on interior canopy structure and can be cost-effectively repeated, but are limited to very small footprints. Although these methods are often utilized to derive similar metrics (e.g., rugosity, LAI) and to address equivalent ecological questions and relationships (e.g., link between LAI and productivity), rarely are inter-comparisons made between techniques. Our objective is to compare methods for deriving canopy structural complexity (CSC) metrics and to assess the capacity of commonly available aerial remote sensing products (and combinations) to match terrestrially-sensed data. We also assess the potential to combine CSC metrics with image-based analysis to predict plot-based NPP measurements in forests of different ages and different levels of complexity. We use combinations of data from drone-based imagery (RGB, NIR, Red Edge), aerial LiDAR (commonly available medium-density leaf-off), terrestrial scanning LiDAR, portable canopy LiDAR, and a permanent plot network - all collected at the University of Michigan Biological Station. Our results will highlight the potential for deriving functionally meaningful CSC metrics from aerial imagery, LiDAR, and combinations of data sources. We will also present results of modeling focused on predicting plot-level NPP from combinations of image-based vegetation indices (e.g., NDVI, EVI) with LiDAR- or image-derived metrics of CSC (e.g., rugosity, porosity), canopy density, (e.g., LAI), and forest structure (e.g., canopy height). This work builds toward future efforts that will use other data combinations, such as those available at NEON sites, and could be used to inform and test popular ecosystem models (e.g., ED2) incorporating structure.

Urban landscape genetics: canopy cover predicts gene flow between white-footed mouse (Peromyscus leucopus) populations in New York City.

PubMed

Munshi-South, Jason

2012-03-01

In this study, I examine the influence of urban canopy cover on gene flow between 15 white-footed mouse (Peromyscus leucopus) populations in New York City parklands. Parks in the urban core are often highly fragmented, leading to rapid genetic differentiation of relatively nonvagile species. However, a diverse array of 'green' spaces may provide dispersal corridors through 'grey' urban infrastructure. I identify urban landscape features that promote genetic connectivity in an urban environment and compare the success of two different landscape connectivity approaches at explaining gene flow. Gene flow was associated with 'effective distances' between populations that were calculated based on per cent tree canopy cover using two different approaches: (i) isolation by effective distance (IED) that calculates the single best pathway to minimize passage through high-resistance (i.e. low canopy cover) areas, and (ii) isolation by resistance (IBR), an implementation of circuit theory that identifies all low-resistance paths through the landscape. IBR, but not IED, models were significantly associated with three measures of gene flow (Nm from F(ST) , BayesAss+ and Migrate-n) after factoring out the influence of isolation by distance using partial Mantel tests. Predicted corridors for gene flow between city parks were largely narrow, linear parklands or vegetated spaces that are not managed for wildlife, such as cemeteries and roadway medians. These results have implications for understanding the impacts of urbanization trends on native wildlife, as well as for urban reforestation efforts that aim to improve urban ecosystem processes. © 2012 Blackwell Publishing Ltd.

Biomechanical factors contributing to self-organization in seagrass landscapes

USGS Publications Warehouse

Fonseca, M.S.; Koehl, M.A.R.; Kopp, B.S.

2007-01-01

Field observations have revealed that when water flow is consistently from one direction, seagrass shoots align in rows perpendicular to the primary axis of flow direction. In this study, live Zostera marina shoots were arranged either randomly or in rows perpendicular to the flow direction and tested in a seawater flume under unidirectional flow and waves to determine if shoot arrangement: a) influenced flow-induced force on individual shoots, b) differentially altered water flow through the canopy, and c) influenced light interception by the canopy. In addition, blade breaking strength was compared with flow-induced force to determine if changes in shoot arrangement might reduce the potential for damage to shoots. Under unidirectional flow, both current velocity in the canopy and force on shoots were significantly decreased when shoots were arranged in rows as compared to randomly. However, force on shoots was nearly constant with downstream distance, arising from the trade-off of shoot bending and in-canopy flow reduction. The coefficient of drag was higher for randomly-arranged shoots at low velocities (< 30 cm s- 1) but converged rapidly among the two shoot arrangements at higher velocities. Shoots arranged in rows tended to intercept slightly more light than those arranged randomly. Effects of shoot arrangement under waves were less clear, potentially because we did not achieve the proper plant size?row spacing ratio. At this point, we may only suggest that water motion, as opposed to light capture, is the dominant physical mechanism responsible for these shoot arrangements. Following a computation of the Environmental Stress Factor, we concluded that even photosynthetically active blades may be damaged or broken under frequently encountered storm conditions, irrespective of shoot arrangement. We hypothesize that when flow is generally from one direction, seagrass bed patterns over multiple scales of consideration may arise as a cumulative effect of individual shoot self-organization driven by reduced force and drag on the shoots and somewhat improved light capture.

A flow resistance model for assessing the impact of vegetation on flood routing mechanics

NASA Astrophysics Data System (ADS)

Katul, Gabriel G.; Poggi, Davide; Ridolfi, Luca

2011-08-01

The specification of a flow resistance factor to account for vegetative effects in the Saint-Venant equation (SVE) remains uncertain and is a subject of active research in flood routing mechanics. Here, an analytical model for the flow resistance factor is proposed for submerged vegetation, where the water depth is commensurate with the canopy height and the roughness Reynolds number is sufficiently large so as to ignore viscous effects. The analytical model predicts that the resistance factor varies with three canonical length scales: the adjustment length scale that depends on the foliage drag and leaf area density, the canopy height, and the water level. These length scales can reasonably be inferred from a range of remote sensing products making the proposed flow resistance model eminently suitable for operational flood routing. Despite the numerous simplifications, agreement between measured and modeled resistance factors and bulk velocities is reasonable across a range of experimental and field studies. The proposed model asymptotically recovers the flow resistance formulation when the water depth greatly exceeds the canopy height. This analytical treatment provides a unifying framework that links the resistance factor to a number of concepts and length scales already in use to describe canopy turbulence. The implications of the coupling between the resistance factor and the water depth on solutions to the SVE are explored via a case study, which shows a reasonable match between empirical design standard and theoretical predictions.

Effects of the Canopy and Flux Tube Anchoring on Evaporation Flow of a Solar Flare

NASA Astrophysics Data System (ADS)

Unverferth, John; Longcope, Dana

2018-06-01

Spectroscopic observations of flare ribbons typically show chromospheric evaporation flows, which are subsonic for their high temperatures. This contrasts with many numerical simulations where evaporation is typically supersonic. These simulations typically assume flow along a flux tube with a uniform cross-sectional area. A simple model of the magnetic canopy, however, includes many regions of low magnetic field strength, where flux tubes achieve local maxima in their cross-sectional area. These are analgous to a chamber in a flow tube. We find that one-third of all field lines in a model have some form of chamber through which evaporation flow must pass. Using a one-dimensional isothermal hydrodynamic code, we simulated supersonic flow through an assortment of chambers and found that a subset of solutions exhibit a stationary standing shock within the chamber. These shocked solutions have slower and denser upflows than a flow through a uniform tube would. We use our solution to construct synthetic spectral lines and find that the shocked solutions show higher emission and lower Doppler shifts. When these synthetic lines are combined into an ensemble representing a single canopy cell, the composite line appears slower, even subsonic, than expected due to the outsized contribution from shocked solutions.

A scalable plant-resolving radiative transfer model based on optimized GPU ray tracing

USDA-ARS?s Scientific Manuscript database

A new model for radiative transfer in participating media and its application to complex plant canopies is presented. The goal was to be able to efficiently solve complex canopy-scale radiative transfer problems while also representing sub-plant heterogeneity. In the model, individual leaf surfaces ...

Modeling complex flow structures and drag around a submerged plant of varied posture

NASA Astrophysics Data System (ADS)

Boothroyd, Richard J.; Hardy, Richard J.; Warburton, Jeff; Marjoribanks, Timothy I.

2017-04-01

Although vegetation is present in many rivers, the bulk of past work concerned with modeling the influence of vegetation on flow has considered vegetation to be morphologically simple and has generally neglected the complexity of natural plants. Here we report on a combined flume and numerical model experiment which incorporates time-averaged plant posture, collected through terrestrial laser scanning, into a computational fluid dynamics model to predict flow around a submerged riparian plant. For three depth-limited flow conditions (Reynolds number = 65,000-110,000), plant dynamics were recorded through high-definition video imagery, and the numerical model was validated against flow velocities collected with an acoustic Doppler velocimeter. The plant morphology shows an 18% reduction in plant height and a 14% increase in plant length, compressing and reducing the volumetric canopy morphology as the Reynolds number increases. Plant shear layer turbulence is dominated by Kelvin-Helmholtz type vortices generated through shear instability, the frequency of which is estimated to be between 0.20 and 0.30 Hz, increasing with Reynolds number. These results demonstrate the significant effect that the complex morphology of natural plants has on in-stream drag, and allow a physically determined, species-dependent drag coefficient to be calculated. Given the importance of vegetation in river corridor management, the approach developed here demonstrates the necessity to account for plant motion when calculating vegetative resistance.

Forest-atmosphere BVOC exchange in diverse and structurally complex canopies: 1-D modeling of a mid-successional forest in northern Michigan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bryan, Alexander M.; Cheng, Susan J.; Ashworth, Kirsti

Foliar emissions of biogenic volatile organic compounds (BVOC)dimportant precursors of tropospheric ozone and secondary organic aerosolsdvary widely by vegetation type. Modeling studies to date typi-cally represent the canopy as a single dominant tree type or a blend of tree types, yet many forests are diverse with trees of varying height. To assess the sensitivity of biogenic emissions to tree height vari-ation, we compare two 1-D canopy model simulations in which BVOC emission potentials are homo-geneous or heterogeneous with canopy depth. The heterogeneous canopy emulates the mid-successional forest at the University of Michigan Biological Station (UMBS). In this case, high-isoprene-emitting fo-liagemore » (e.g., aspen and oak) is constrained to the upper canopy, where higher sunlight availability increases the light-dependent isoprene emission, leading to 34% more isoprene and its oxidation products as compared to the homogeneous simulation. Isoprene declines from aspen mortality are 10% larger when heterogeneity is considered. Overall, our results highlight the importance of adequately representing complexities of forest canopy structure when simulating light-dependent BVOC emissions and chemistry.« less

EFFECTS OF EELGRASS ZOSTRA MARINA CANOPIES ON FLOW AND TRANSPORT

EPA Science Inventory

Ecological effects of the interaction between submerged aquatic vegetation and currents depend on the plants and their associated organisms as well as the large-scale transport of dissolved and suspended constituents near the canopy. Mathematical models for airflow within plant c...

Verification and Validation of the Spring Model Parachute Air Delivery System in Subsonic Flow

DTIC Science & Technology

2015-02-27

putational challenges in handling the geometric complexities of the parachute canopy and the contact between parachutes in a cluster. Kim and Peskin et...Runge-Kutta method with numerical flux evaluated by 5-th order WENO scheme. The equations for k and ε are discretized with Crank -Nicolson scheme to...construction formula uk+1i = f ( uki−3, u k i−2, u k i−1, u k i , u k,poro i+1 , u k,poro i+2 , u k,poro i+3 ) . Diffusion part is solved using Crank

Atmospheric and Science Complexity Effects on Surface Bidirectional Reflectance

NASA Technical Reports Server (NTRS)

Diner, D. J. (Principal Investigator); Martonchik, J. V.; Sythe, W. D.; Hessom, C.

1985-01-01

Among the tools used in passive remote sensing of Earth resources in the visible and near-infrared spectral regions are measurements of spectral signature and bidirectional reflectance functions (BDRFs). Determination of surface properties using these observables is complicated by a number of factors, including: (1) mixing of surface components, such as soil and vegetation, (2) multiple reflections of radiation due to complex geometry, such as in crop canopies, and (3) atmospheric effects. In order to bridge the diversity in these different approaches, there is a need for a fundamental physical understanding of the influence of the various effects and a quantiative measure of their relative importance. In particular, we consider scene complexity effects using the example of reflection by vegetative surfaces. The interaction of sunlight with a crop canopy and interpretation of the spectral and angular dependence of the emergent radiation is basically a multidimensional radiative transfer problem. The complex canopy geometry, underlying soil cover, and presence of diffuse as well as collimated illumination will modify the reflectance characteristics of the canopy relative to those of the individual elements.

Canopy structural complexity predicts forest canopy light absorption at continental scales

NASA Astrophysics Data System (ADS)

Atkins, J. W.; Fahey, R. T.; Hardiman, B. S.; Gough, C. M.

2017-12-01

Understanding how the physical structure of forest canopies influence light acquisition is a long-standing area of inquiry fundamental to advancing understanding of many areas of the physical sciences, including the modeling and interpretation of biogeochemical cycles. Conventional measures of forest canopy structure employed in earth system models are often limited to leaf area index (LAI)—a measure of the quantity of leaves in the canopy. However, more novel multi-dimensional measures of canopy structural complexity (CSC) that describe the arrangement of vegetation are now possible because of technological advances, and may improve modeled estimates of canopy light absorption. During 2016 and 2017, we surveyed forests at sites from across the eastern, southern, and midwestern United States using portable canopy LiDAR (PCL). This survey included 14 National Ecological Observation Network (NEON), Long-Term Ecological Research Network (LTER,) Ameriflux, and University affiliated sites. Our findings show that a composite model including CSC parameters and LAI explains 96.8% of the variance in light acquisition, measured as the fraction of photosynthetically absorbed radiation (fPAR) at the continental scale, and improvement of 12% over an LAI only model. Under high light sky conditions, measures of CSC are more strongly coupled with light acquisition than under low light, possibly because light scattering partially decouples CSC from canopy light absorption under low, predominately diffuse light conditions. We conclude that scalable estimates of CSC metrics may improve continent-wide estimates of canopy light absorption and, therefore, carbon uptake, with implications for remote sensing and earth system modeling.

Quantification of the effects of architectural traits on dry mass production and light interception of tomato canopy under different temperature regimes using a dynamic functional–structural plant model

PubMed Central

Chen, Tsu-Wei; Nguyen, Thi My Nguyet; Kahlen, Katrin; Stützel, Hartmut

2014-01-01

There is increasing interest in evaluating the environmental effects on crop architectural traits and yield improvement. However, crop models describing the dynamic changes in canopy structure with environmental conditions and the complex interactions between canopy structure, light interception, and dry mass production are only gradually emerging. Using tomato (Solanum lycopersicum L.) as a model crop, a dynamic functional–structural plant model (FSPM) was constructed, parameterized, and evaluated to analyse the effects of temperature on architectural traits, which strongly influence canopy light interception and shoot dry mass. The FSPM predicted the organ growth, organ size, and shoot dry mass over time with high accuracy (>85%). Analyses of this FSPM showed that, in comparison with the reference canopy, shoot dry mass may be affected by leaf angle by as much as 20%, leaf curvature by up to 7%, the leaf length:width ratio by up to 5%, internode length by up to 9%, and curvature ratios and leaf arrangement by up to 6%. Tomato canopies at low temperature had higher canopy density and were more clumped due to higher leaf area and shorter internodes. Interestingly, dry mass production and light interception of the clumped canopy were more sensitive to changes in architectural traits. The complex interactions between architectural traits, canopy light interception, dry mass production, and environmental conditions can be studied by the dynamic FSPM, which may serve as a tool for designing a canopy structure which is ‘ideal’ in a given environment. PMID:25183746

Compliance of secondary production and eco-exergy as indicators of benthic macroinvertebrates assemblages' response to canopy cover conditions in Neotropical headwater streams.

PubMed

Linares, Marden Seabra; Callisto, Marcos; Marques, João Carlos

2018-02-01

Riparian vegetation cover influences benthic assemblages structure and functioning in headwater streams, as it regulates light availability and autochthonous primary production in these ecosystems.Secondary production, diversity, and exergy-based indicators were applied in capturing how riparian cover influences the structure and functioning of benthic macroinvertebrate assemblages in tropical headwater streams. Four hypotheses were tested: (1) open canopy will determine the occurrence of higher diversity in benthic macroinvertebrate assemblages; (2) streams with open canopy will exhibit more complex benthic macroinvertebrate communities (in terms of information embedded in the organisms' biomass); (3) in streams with open canopy benthic macroinvertebrate assemblages will be more efficient in using the available resources to build structure, which will be reflected by higher eco-exergy values; (4) benthic assemblages in streams with open canopy will exhibit more secondary productivity. We selected eight non-impacted headwater streams, four shaded and four with open canopy, all located in the Neotropical savannah (Cerrado) of southeastern Brazil. Open canopy streams consistently exhibited significantly higher eco-exergy and instant secondary production values, exemplifying that these streams may support more complex and productive benthic macroinvertebrate assemblages. Nevertheless, diversity indices and specific eco-exergy were not significantly different in shaded and open canopy streams. Since all the studied streams were selected for being considered as non-impacted, this suggests that the potential represented by more available food resources was not used to build a more complex dissipative structure. These results illustrate the role and importance of the canopy cover characteristics on the structure and functioning of benthic macroinvertebrate assemblages in tropical headwater streams, while autochthonous production appears to play a crucial role as food source for benthic macroinvertebrates. This study also highlights the possible application of thermodynamic based indicators as tools to guide environmental managers in developing and implementing policies in the neotropical savannah. Copyright © 2017 Elsevier B.V. All rights reserved.

Organised Motion in a Tall Spruce Canopy: Temporal Scales, Structure Spacing and Terrain Effects

NASA Astrophysics Data System (ADS)

Thomas, Christoph; Foken, Thomas

2007-01-01

This study investigates the organised motion near the canopy-atmosphere interface of a moderately dense spruce forest in heterogeneous, complex terrain. Wind direction is used to assess differences in topography and surface properties. Observations were obtained at several heights above and within the canopy using sonic anemometers and fast-response gas analysers over the course of several weeks. Analysed variables include the three-dimensional wind vector, the sonic temperature, and the concentration of carbon dioxide. Wavelet analysis was used to extract the organised motion from time series and to derive its temporal scales. Spectral Fourier analysis was deployed to compute power spectra and phase spectra. Profiles of temporal scales of ramp-like coherent structures in the vertical and longitudinal wind components showed a reversed variation with height and were of similar size within the canopy. Temporal scales of scalar fields were comparable to those of the longitudinal wind component suggesting that the lateral scalar transport dominates. The existence of a 1 power law in the longitudinal power spectra was confirmed for a few cases only, with a majority showing a clear 5/3 decay. The variation of effective scales of organised motion in the longitudinal velocity and temperature were found to vary with atmospheric stability, suggesting that both Kelvin-Helmholtz instabilities and attached eddies dominate the flow with increasing convectional forcing. The canopy mixing-layer analogy was observed to be applicable for ramp-like coherent structures in the vertical wind component for selected wind directions only. Departures from the prediction of m = Λ w L {/s -1} = 8 10 (where Λ w is the streamwise spacing of coherent structures in the vertical wind w and L s is a canopy shear length scale) were caused by smaller shear length scales associated with large-scale changes in the terrain as well as the vertical structure of the canopy. The occurrence of linear gravity waves was related to a rise in local topography and can therefore be referred to as mountain-type gravity waves. Temporal scales of wave motion and ramp-like coherent structures were observed to be comparable.

Estimating sources, sinks and fluxes of reactive atmospheric compounds within a forest canopy

EPA Science Inventory

While few dispute the significance of within-canopy sources or sinks of reactive gaseous and particulate compounds, their estimation continues to be the subject of active research and debate. Reactive species undergo turbulent dispersion within an inhomogeneous flow field, and ma...

Physical-biological coupling in spore dispersal of kelp forest macroalgae

NASA Astrophysics Data System (ADS)

Gaylord, Brian; Reed, Daniel C.; Washburn, Libe; Raimondi, Peter T.

2004-08-01

The physical-biological linkages controlling the dispersal of spores produced by macroalgae that reside in kelp forests are complicated and laced with feedbacks. Here we discuss the fundamental elements of these interactions. Biological considerations include spore swimming and sinking speeds, their periods of viability in the plankton, and the height of spore release above the seafloor, which together determine the durations over which spores can be swept by horizontal currents before they contact the seafloor. Morphologies and material properties of canopy forming kelps may also influence the drag exerted on passing waters by the kelps, the plants' ability to persist in the face of rapid flows, and thereby the degree to which impinging currents are redirected around, or slowed within, kelp forests. Macroalgal life histories, and the size of spore sources as controlled by the dimensions of kelp forests and the density and fecundity of individuals within them, influence effective dispersal distances as well. Physical considerations encompass the mean speed, direction, and timescales of variability of currents relative to spore suspension times, the interaction of surface gravity waves with currents in producing turbulence in the benthic boundary layer, wind-driven surface mixing, water stratification, and shoreline bathymetry and substratum roughness, all of which can affect the interplay of vertical and horizontal transport of macroalgal spores. Intricate within-forest processes may induce attenuation of current speeds and consequent reductions in seabed shear, along with simultaneous production of small-scale turbulence in kelp wakes. Slower mean currents and smaller eddy scales in turn may attenuate vertical mixing within forests, thus extending spore suspension times. Further complexities likely arise due to changes in the relative rates of horizontal and vertical dispersion, modifications to the overall profiles of vertical mixing, and the creation of fine-scale secondary flows around kelp individuals and substratum features. Under conditions of more rapid currents, submergence of the surface canopy and the establishment of skimming flows at the canopy-fluid interface may introduce additional coherent flow structures that alter rates of fluid exchange to and from the forest. Many of these coupled physical-biological processes are just beginning to be examined in a rigorous fashion in kelp forests, but their potential importance is clear.

What plant hydraulics can tell us about responses to climate-change droughts.

PubMed

Sperry, John S; Love, David M

2015-07-01

Climate change exposes vegetation to unusual drought, causing declines in productivity and increased mortality. Drought responses are hard to anticipate because canopy transpiration and diffusive conductance (G) respond to drying soil and vapor pressure deficit (D) in complex ways. A growing database of hydraulic traits, combined with a parsimonious theory of tree water transport and its regulation, may improve predictions of at-risk vegetation. The theory uses the physics of flow through soil and xylem to quantify how canopy water supply declines with drought and ceases by hydraulic failure. This transpiration 'supply function' is used to predict a water 'loss function' by assuming that stomatal regulation exploits transport capacity while avoiding failure. Supply-loss theory incorporates root distribution, hydraulic redistribution, cavitation vulnerability, and cavitation reversal. The theory efficiently defines stomatal responses to D, drying soil, and hydraulic vulnerability. Driving the theory with climate predicts drought-induced loss of plant hydraulic conductance (k), canopy G, carbon assimilation, and productivity. Data lead to the 'chronic stress hypothesis' wherein > 60% loss of k increases mortality by multiple mechanisms. Supply-loss theory predicts the climatic conditions that push vegetation over this risk threshold. The theory's simplicity and predictive power encourage testing and application in large-scale modeling. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

The Impact of Unsteady Reconfiguration on Turbulence Structure within a Flexible Canopy: Large-Eddy Simulation Study of a Cornfield

NASA Astrophysics Data System (ADS)

Chamecki, M.; Pan, Y.; Nepf, H. M.; Follett, E.

2014-12-01

Flexible plants bend in response to fluid motion and this reconfiguration mechanism allows plants to minimize the increase of drag force with increasing velocity, ensuring survival in flow-dominated habitats. The effect of reconfiguration on the flow field can be modeled by introducing a drag coefficient that decreases with increasing velocity. Typically, a power-law decrease of the drag coefficient with increasing velocity is used, and the negative exponent is known as the Vogel number. In practice, the Vogel number is a function of canopy rigidity and flow conditions. In this work we show that accounting for the effect of reconfiguration is required for large-eddy simulation (LES) models to reproduce the skewness of the streamwise and vertical velocity components and the distribution of sweeps and ejections observed in a large cornfield. Additional LES runs are conducted to investigate the structure of turbulence in different reconfiguration regimes, with mean vertical momentum flux constrained by measurements. The change of the Vogel number has negligible effects on LES predictions of the total vertical momentum flux and the components of turbulent kinetic energy, but produces profound changes in the mechanisms of momentum transport. This work demonstrates the necessity to model the effect of reconfiguration in LES studies of canopy flows. It also highlights the impacts of reconfiguration on the structure of turbulence and the dynamics of momentum fluxes, as well as any other process that depends on velocity fluctuations above and within the canopy region.

Gene flow in Prunus species in the context of novel trait risk assessment.

PubMed

Cici, S Zahra H; Van Acker, Rene C

2010-01-01

Prunus species are important commercial fruit (plums, apricot, peach and cherries), nut (almond) and ornamental trees cultivated broadly worldwide. This review compiles information from available literature on Prunus species in regard to gene flow and hybridization within this complex of species. The review serves as a resource for environmental risk assessment related to pollen mediated gene flow and the release of transgenic Prunus. It reveals that Prunus species, especially plums and cherries show high potential for transgene flow. A range of characteristics including; genetic diversity, genetic bridging capacity, inter- and intra-specific genetic compatibility, self sterility (in most species), high frequency of open pollination, insect assisted pollination, perennial nature, complex phenotypic architecture (canopy height, heterogeneous crown, number of flowers produced in an individual plant), tendency to escape from cultivation, and the existence of ornamental and road side Prunus species suggest that there is a tremendous and complicated ability for pollen mediated gene movement among Prunus species. Ploidy differences among Prunus species do not necessarily provide genetic segregation. The characteristics of Prunu s species highlight the complexity of maintaining coexistence between GM and non-GM Prunus if there were commercial production of GM Prunus species. The results of this review suggest that the commercialization of one GM Prunus species can create coexistence issues for commercial non-GM Prunus production. Despite advances in molecular markers and genetic analysis in agroecology, there remains limited information on the ecological diversity, metapopulation nature, population dynamics, and direct measures of gene flow among different subgenera represented in the Prunus genus. Robust environmental impact, biosafety and coexistence assessments for GM Prunus species will require better understanding of the mechanisms of gene flow and hybridization among species within the Prunus species complex. © ISBR, EDP Sciences, 2011.

Tree Death Leading To Ecosystem Renewal? Forecasting Carbon Storage As Eastern Forests Age

NASA Astrophysics Data System (ADS)

Curtis, P.; Gough, C. M.; Bohrer, G.; Nadelhoffer, K. J.; Ivanov, V. Y.

2013-12-01

The future trajectory of North American carbon (C) stocks remains uncertain as a subset of maturing trees die in mixed deciduous forests of the U.S. Midwest and East transitioning from early to middle and late succession. We are studying disturbance-structure-function relationships of aging forests in northern Michigan using long-term ecological and meteorological C cycling studies, a large-scale disturbance experiment, a 200-year forest chronosequence, and flux comparisons across three tower sites. We find that ecosystem responses to mortality are characterized by several processes that affect structure-function relationships and alter the way ecosystem functioning interacts with meteorological forcing. We subjected 39 ha of forest to moderate experimental disturbance, similar to that of age-related or climatically induced tree mortality. We found that the mortality of a third of all canopy trees minimally altered the balance between forest C uptake and release, as growth-limiting light and nitrogen resources were rapidly reallocated from dead and dying trees to undisturbed trees. Although disturbance-induced mortality increased soil N mineralization rates, nitrification, and denitrification, N exports from soils remained low. Upper canopy gap formation and a rise in structural complexity allowed increased photosynthetic contribution of sub-canopy vegetation to compensate for the death of canopy dominant trees. However, we found large differences between the transpirational response of maples and oaks to VPD and soil moisture, which led to relative declines in maple transpiration post-disturbance. These hydrologic differences may affect a species' ability to compete for resources following such a disturbance. Changes to canopy structure had a relatively small effect on roughness length and the turbulence forcing of fluxes from the canopy. We currently are studying how tree mortality driven changes in canopy structure affects within-canopy resource distribution and subsequent changes in leaf morphological, physiological and biochemical traits, how disturbance severity relates to the magnitude of C storage resilience, the impacts of clouds and aerosols on surface diffuse light and how they interact with canopy structure to modify C uptake, and how these processes change overall C assimilation given different forest age and disturbance histories. Along a conceptual continuum from structural to functional attributes, our results show that leaf area distribution and its heterogeneity, canopy light, water and nutrient use efficiency, canopy roughness length and turbulent mixing of canopy air, and the coupling between soil moisture and canopy density, all change with successional and disturbance processes and affect ecosystem C fluxes. Patchy mortality and related increases in structural complexity could, against expectations, enhance the C storage of some forests. Our finding that increases in canopy structural complexity improve resource-use efficiency provides a mechanism for maintaining high rates of C storage in aging forests.

An ecohydrologic model for a shallow groundwater urban environment.

PubMed

Arden, Sam; Ma, Xin Cissy; Brown, Mark

2014-01-01

The urban environment is a patchwork of natural and artificial surfaces that results in complex interactions with and impacts to natural hydrologic cycles. Evapotranspiration is a major hydrologic flow that is often altered through urbanization, although the mechanisms of change are sometimes difficult to tease out due to difficulty in effectively simulating soil-plant-atmosphere interactions. This paper introduces a simplified yet realistic model that is a combination of existing surface runoff and ecohydrology models designed to increase the quantitative understanding of complex urban hydrologic processes. Results demonstrate that the model is capable of simulating the long-term variability of major hydrologic fluxes as a function of impervious surface, temperature, water table elevation, canopy interception, soil characteristics, precipitation and complex mechanisms of plant water uptake. These understandings have potential implications for holistic urban water system management.

Turbulent Dispersion of Pathogenic Spores Within and Above Plant Canopies: Field Experiments and Lagrangian Modeling

NASA Astrophysics Data System (ADS)

Gleicher, S.; Chamecki, M.; Isard, S.; Katul, G. G.

2012-12-01

Plant disease epidemics caused by pathogenic spores are a common and consequential threat to agricultural crops. In most cases, pathogenic spores are produced and released deep inside plant canopies and must be transported out of the canopy region in order to infect other fields and spread the disease. The fraction of spores that "escape" the canopy is crucial in determining how fast and far these plant diseases will spread. The goal of this work is to use a field experiment, coupled with a Lagrangian Stochastic Model (LSM), to investigate how properties of canopy turbulence impact the dispersion of spores inside the canopy and the fraction of spores that escape from the canopy. An extensive field experiment was conducted to study spore dispersion inside and outside a corn canopy. The spores were released from point sources located at various depths inside the canopy. Concentration measurements were obtained inside and above the canopy by a 3-dimensional grid of spore collectors. The experimental measurements of mean spore concentration are used to validate a LSM for spore dispersion. In the LSM, flow field statistics used to drive the particle dispersion are specified by a second-order closure model for turbulence within plant canopies. The dispersion model includes spore deposition on and rebound from canopy elements. The combination of experimental and numerical simulations is used to quantify the fraction of spores that escape the canopy. Effects of release height, friction velocity, and canopy architecture on the escape fraction of spores are explored using the LSM, and implications for disease propagation are discussed.

Experimental Study of Aligned and Staggered Wind Farms in a Convective Boundary Layer

NASA Astrophysics Data System (ADS)

Markfort, Corey; Zhang, Wei; Porte-Agel, Fernando

2011-11-01

Wind farm-atmosphere interaction is complicated by turbine configuration and thermal effects on momentum and kinetic energy fluxes. Wind farms of finite length have been modeled as increased surface roughness or as a sparse canopy; however it is not clear which approach is more appropriate. Experiments were conducted in a thermally controlled boundary layer wind tunnel, using a custom x-wire/cold wire and surface heat flux sensors, to understand the effect of aligned versus staggered turbine configurations on momentum absorption and flow adjustment in a convective boundary layer (CBL). Results for experiments of a large farm show the span-wise averaged flow statistics exhibit similar turbulent transport properties to that of canopy flows. The wake adjusts within and grows over the farm more quickly for a staggered compared to an aligned farm. Using canopy flow scaling, we show that the flow equilibrates faster and the overall momentum absorption is higher in a staggered compared to an aligned farm. Wake recovery behind a single turbine is facilitated by buoyancy in a CBL (Zhang et al. under review). We find a similar effect in wind farms resulting in reduced effective roughness and momentum absorption. We also find a reduction of surface heat flux for both wind farms, but greater for the staggered farm.

Evaluation of an urban vegetative canopy scheme and impact on plume dispersion

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nelson, Matthew A; Williams, Michael D; Zajic, Dragan

2009-01-01

The Quick Urban and Industrial Complex (QUIC) atmospheric dispersion modeling system attempts to fill an important gap between the fast, but nonbuilding-aware Gaussian plume models and the building-aware but slow computational fluid dynamics (CFD) models. While Gaussian models have the ability to give answers quickly to emergency responders, they are unlikely to be able to adequately account for the effects of the building-induced complex flow patterns on the near-source dispersion of contaminants. QUIC uses a diagnostic massconsistent empirical wind model called QUIC-URB that is based on the methodology of Rockle (1990), (see also Kaplan and Dinar 1996). In this approach,more » the recirculation zones that form around and between buildings are inserted into the flow using empirical parameterizations and then the wind field is forced to be mass consistent. Although not as accurate as CFD codes, this approach is several orders of magnitude faster and accounts for the bulk effects of buildings.« less

Microscale Obstacle Resolving Air Quality Model Evaluation with the Michelstadt Case

PubMed Central

Rakai, Anikó; Kristóf, Gergely

2013-01-01

Modelling pollutant dispersion in cities is challenging for air quality models as the urban obstacles have an important effect on the flow field and thus the dispersion. Computational Fluid Dynamics (CFD) models with an additional scalar dispersion transport equation are a possible way to resolve the flowfield in the urban canopy and model dispersion taking into consideration the effect of the buildings explicitly. These models need detailed evaluation with the method of verification and validation to gain confidence in their reliability and use them as a regulatory purpose tool in complex urban geometries. This paper shows the performance of an open source general purpose CFD code, OpenFOAM for a complex urban geometry, Michelstadt, which has both flow field and dispersion measurement data. Continuous release dispersion results are discussed to show the strengths and weaknesses of the modelling approach, focusing on the value of the turbulent Schmidt number, which was found to give best statistical metric results with a value of 0.7. PMID:24027450

Microscale obstacle resolving air quality model evaluation with the Michelstadt case.

PubMed

Rakai, Anikó; Kristóf, Gergely

2013-01-01

Modelling pollutant dispersion in cities is challenging for air quality models as the urban obstacles have an important effect on the flow field and thus the dispersion. Computational Fluid Dynamics (CFD) models with an additional scalar dispersion transport equation are a possible way to resolve the flowfield in the urban canopy and model dispersion taking into consideration the effect of the buildings explicitly. These models need detailed evaluation with the method of verification and validation to gain confidence in their reliability and use them as a regulatory purpose tool in complex urban geometries. This paper shows the performance of an open source general purpose CFD code, OpenFOAM for a complex urban geometry, Michelstadt, which has both flow field and dispersion measurement data. Continuous release dispersion results are discussed to show the strengths and weaknesses of the modelling approach, focusing on the value of the turbulent Schmidt number, which was found to give best statistical metric results with a value of 0.7.

Electrical resistivity surveys to understand vegetation-water interlinkages in a northern latitude headwater catchment

NASA Astrophysics Data System (ADS)

Soulsby, C.; Dick, J.; Tetzlaff, D.; Bradford, J.

2016-12-01

The role of vegetation on the partitioning of precipitation, and the subsequent storage and release of water within the landscape is poorly understood. In particular, the relationship between vegetation and soil moisture is complex and reciprocal. The role of soil moisture as the primary source of water to plants may affect vegetation distribution. In turn, the structure of vegetation canopies may regulate water partitioning into interception, throughfall and steam flow. Such spatial differences in the inputs, together with complex patterns of water uptake from highly distributed root networks can create marked heterogeneity in soil moisture dynamics at small scales. Here, we present a study combining 3D and 2D ERT surveys with soil moisture measurements in a 3.2km upland catchment in the Scottish Highlands to understand influences of different vegetation types on spatio-temporal dynamics in soil moisture. The study focussed on one year of fortnightly ERT surveys to investigate plant-soil-water interactions within the root zone in podzolic soils. Locations were selected in both forest stands of 15m high Scots pine (Pinus sylvestris) and non-forest locations dominated by heather (Calluna vulgaris) shrubs (<0.5m high). These dominant species are typical of forest and non-forest vegetation communities in the Scottish Highlands. Results showed differences in the soil moisture dynamics under the different vegetation types, with heterogeneous patterns in the forested site mainly correlated with canopy cover and mirroring interception losses, with pronounced wetting cycles of the soil surrounding the bole of trees as a consequence of stem flow. Temporal variability in the forested site was greater, probably due to the interception, and increased evapotranspiration losses relative to the heather site, with drying typically being focussed on the areas around the trees, and reflecting the amount of water uptake. Moisture changes in the heather site were fairly heterogeneous are related to micro-topographic affects, lower interception ( 30% compared with 45%) and a smaller microclimatic effect of the canopy which serves to create greater fluctuations in soil moisture. Our results confirm the value in using geophysics to spatially elucidate subsurface plant-soil-water interactions.

EXPERIMENTAL AND MODEL-COMPUTED AREA AVERAGED VERTICAL PROFILES OF WIND SPEED FOR EVALUATION OF MESOSCALE URBAN CANOPY SCHEMES

EPA Science Inventory

Numerous urban canopy schemes have recently been developed for mesoscale models in order to approximate the drag and turbulent production effects of a city on the air flow. However, little data exists by which to evaluate the efficacy of the schemes since "area-averaged&quo...

Optimizing the Determination of Roughness Parameters for Model Urban Canopies

NASA Astrophysics Data System (ADS)

Huq, Pablo; Rahman, Auvi

2018-05-01

We present an objective optimization procedure to determine the roughness parameters for very rough boundary-layer flow over model urban canopies. For neutral stratification the mean velocity profile above a model urban canopy is described by the logarithmic law together with the set of roughness parameters of displacement height d, roughness length z_0 , and friction velocity u_* . Traditionally, values of these roughness parameters are obtained by fitting the logarithmic law through (all) the data points comprising the velocity profile. The new procedure generates unique velocity profiles from subsets or combinations of the data points of the original velocity profile, after which all possible profiles are examined. Each of the generated profiles is fitted to the logarithmic law for a sequence of values of d, with the representative value of d obtained from the minima of the summed least-squares errors for all the generated profiles. The representative values of z_0 and u_* are identified by the peak in the bivariate histogram of z_0 and u_* . The methodology has been verified against laboratory datasets of flow above model urban canopies.

On the spatial coherence of temperature within and above a vineyard under drainage conditions

NASA Astrophysics Data System (ADS)

Everard, K.; Giometto, M. G.; Christen, A.; Oldroyd, H. J.; Parlange, M. B.

2017-12-01

We show that turbulent exchange within vineyards under nighttime drainage conditions is controlled by large-scale coherent structures arising from a mixing-layer type instability at the canopy top, h. A combination of measurements and large-eddy simulations (LESs) are here used to characterize the onset and development of such structures as a function of the approaching wind angle over an organized canopy during drainage flows. Measurements were carried out over a west-facing 7° vineyard slope near Oliver, BC, Canada in the Okanagan Valley between July 5 and July 22, 2016. The vineyard canopy had an average height of h = 2.3 m, with parallel rows oriented in the local downslope direction (i.e. east-west). The set-up consisted of an array of five vertically arranged ultrasonic anemometers at z/h = 0.19, 0.39, 0.65, 1.02, and 2.06, and a 2-D grid of 40 fine-wire thermocouples arranged at the same heights as the ultrasonic anemometer array on 8 separate masts extending in the upslope direction at locations up to x/h = 13.91 from the flux tower. To complement observations, pressure-driven open-channel flow LESs are performed over a regular domain where vegetation is accounted for via a space dependent drag force. The drainage flow regime is emulated via a tuned pressure-gradient forcing, and different approaching wind angles are considered. Linear stability analyses show that the most unstable mode at the canopy top strongly depends on the approaching wind angle. Space-lagged correlations from measurements show that the lifetime of such eddies within the canopy also depends on the approaching wind direction, with longer lifetimes observed when wind angles are directed along the vine-rows. LESs are compared with measured quantities to ensure matching, and then used to investigate in detail the influence of the above-canopy wind vectors on eddy lifetimes. The impact of the observed coherent structures on momentum and heat exchange coefficients are also discussed.

Strategic guidelines for street canyon geometry to achieve sustainable street air quality—part II: multiple canopies and canyons

NASA Astrophysics Data System (ADS)

Chan, Andy T.; Au, William T. W.; So, Ellen S. P.

The flow field and pollutant dispersion characteristics in a three-dimensional urban street canyon are investigated for various building array geometries. The street canyon in consideration is located in a multi-canopy building array that is similar to realistic estate situations. The pollutant dispersion characteristics are studied for various canopy aspect ratios, namely: the canyon height to width ratio, canyon length to height ratio, canyon breadth ratio and crossroad locations are studied. A three-dimensional field-size canyon has been analysed through numerical simulations using k- ɛ turbulence model. As expected, the wind flow and mode of pollutant dispersion is strongly dependent on the various flow geometric configurations and that the results can be different from that of a single canyon system. For example, it is found that the pollutant retention value is minimum when the canyon height-to-width ratio is approximately 0.8, or that the building height ratio is 0.5. Various rules of thumbs on urban canyon geometry have been established for good pollutant dispersion.

The effects of the canopy created velocity inflection in the wake development

NASA Astrophysics Data System (ADS)

Agafonova, O.; Avramenko, A.; Chaudhari, A.; Hellsten, A.

2016-06-01

The aim of this paper is to study the effects of forest on the turbine wakes. Initially, the ACL (actuator line) model as well as a Canopy model are validated with the experiments separately. The models are further applied to simulate the flow over two wind turbines in a row located within the forest.

Canopy structure and atmospheric flows in relation to the δ13C of respired CO2 in a subalpine coniferous forest

USGS Publications Warehouse

Schaeffer, Sean M.; Anderson, Dean E.; Burns, Sean P.; Monson, Russell K.; Sun, Jielun; Bowling, David R.

2008-01-01

Stable isotopes provide insight into ecosystem carbon cycling, plant physiological processes, atmospheric boundary-layer dynamics, and are useful for the integration of processes over multiple scales. Of particular interest is the carbon isotope content (δ13C) of nocturnal ecosystem-respired CO2 (δR). Recent advances in technology have made it possible to continuously examine the variation in δR within a forest canopy over relatively long time-scales (months–years). We used tunable diode laser spectroscopy to examine δR at within- and below-canopy spatial locations in a Colorado subalpine forest (the Niwot Ridge AmeriFlux site). We found a systematic pattern of increased δR within the forest canopy (δR-c) compared to that near the ground (δR-g). Values of δR-c were weakly correlated with the previous day's mean maximum daytime vapor pressure deficit (VPD). Conversely, there was a negative but still weak correlation between δR-g and time-lagged (0–5 days) daily mean soil moisture. The topography and presence of sustained nightly drainage flows at the Niwot Ridge forest site suggests that, on nights with stable atmospheric conditions, there is little mixing of air near the ground with that in the canopy. Atmospheric stability was assessed using thresholds of friction velocity, stability above the canopy, and bulk Richardson number within the canopy. When we selectively calculated δR-g and δR-c by removing time periods when ground and canopy air were well mixed, we found stronger correlations between δR-c and VPD, and δR-g and soil moisture. This suggests that there may be fundamental differences in the environmental controls on δR at sub-canopy spatial scales. These results may help explain the wide variance observed in the correlation of δR with different environmental parameters in other studies.

The Role and Modeling of Dispersive Stresses

NASA Astrophysics Data System (ADS)

Shavit, U.; Moltchanov, S.

2012-12-01

Dispersive stresses represent momentum fluxes that are induced by the spatial heterogeneity of flow environments such as forest canopies, river vegetation and coral reefs. When deriving the average momentum equation for such flow environments, these dispersive stresses resemble the Reynolds stresses but instead of correlations of temporal fluctuations they represent correlations of spatial fluctuations. Surprisingly, these stresses are ignored in flow models and very few studies attempted to provide a physical interpretation, let alone a closure model. Typical arguments that justify such modeling are that these stresses are small and negligible; however, recent studies have shown that they may be important. In a recent study we showed that dispersive stresses at the inlet to obstructed region (made of glass cylinders) are larger than the Reynolds stresses and their contribution to the momentum balance is as important as the pressure and the drag forces. In this presentation we will try to explain what they are, provide some intuitive physical interoperation and show that closure models can be developed. Our results are based on highly detailed particle image velocimeter (PIV) measurements that were obtained inside a canopy model made of vertical thin glass plates. Forty nine vertical cross sections were obtained 1000 times generating a huge dataset of more than 250 million data points for each flow conditions. A careful spatial averaging procedure was developed and both temporal and spatial correlations were obtained. An order of magnitude analysis will be presented and the role of each of the terms in the momentum equation will be evaluated. It will be shown that the dispersive stresses are large and significant within the area of the canopy leading edge. Since dispersive stresses do not exist upstream from the canopy they are expected to grow once the flow enters the canopy. Our PIV data shows an initial fast growth up to about one length scale into the patch. Following this peak value the dispersive stresses decrease, reaching low and constant values further downstream. The actual distance of importance depends on the drag imposed by the canopy. The challenging task of studying dispersive stresses is the development of closure models. We will demonstrate a linear relationship between the normal dispersive stresses and the square of the double-average velocity. We will also show that the non-constant proportionality coefficient depends on the area of the wakes behind the obstacles. We will propose a simple formulation for this coefficient and will use our detailed PIV measurements to demonstrate the good agreement between the modeled and measured stresses, both at the entry region and in the fully-developed region.

The Mica Creek Experimental Watershed: An Outdoor Laboratory for the Investigation of Hydrologic Processes in a Continental/Maritime Mountainous Environment

NASA Astrophysics Data System (ADS)

Link, T. E.; Gravelle, J.; Hubbart, J.; Warnsing, A.; Du, E.; Boll, J.; Brooks, E.; Cundy, T.

2004-12-01

Experimental catchments have proven to be extremely useful for investigations focused on fundamental hydrologic processes and on the impacts of land cover change on hydrologic regimes and water quality. Recent studies have illustrated how watershed responses to experimental treatments vary greatly between watersheds with differing physical, ecological and hydroclimatic characteristics. Meteorological and hydrological data within catchments are needed to help identify how hydrologic mechanisms may be altered by land cover alterations, and to both constrain and develop spatially-distributed physically based models. Existing instrumentation at the Mica Creek Experimental Watershed (MCEW) in northern Idaho is a fourth-order catchment that is undergoing expansion to produce a comprehensive dataset for model development and testing. The experimental catchments encompass a 28 km2 area spanning elevations from 975 to 1725 m msl. Snow processes dominate the hydrology of the catchment and climate conditions in the winter alternate between cold, dry continental and warm, moist maritime weather systems. Landcover is dominated by 80 year old second growth conifer forests, with partially cut (thinned) and clear-cut sub-catchments. Climate and precipitation data are collected at a SNOTEL site, three primary, and seven supplemental meteorological stations stratified by elevation and canopy cover. Manual snow depth measurements are recorded every 1-2 weeks during snowmelt, stratified by aspect, elevation and canopy cover. An air temperature transect spans three second-order sub-catchments to track air temperature lapse rate dynamics. Precipitation gauge arrays are installed within thinned and closed-canopy stands to track throughfall and interception loss. Nine paired and nested sub-catchments are monitored for flow, temperature, sediment, and nutrients. Hydroclimatic data are augmented by LiDAR and hyperspectral imagery for determination of canopy and topographic structure. Results will serve as a key dataset to assess how canopy conditions affect surface hydrology in complex snow-dominated catchments in the intermountain western U.S.

Hydrology, vegetation, and soils of riverine and tidal floodplain forests of the lower Suwannee River, Florida, and potential impacts of flow reductions

USGS Publications Warehouse

Light, Helen M.; Darst, Melanie R.; Lewis, Lori J.; Howell, David A.

2002-01-01

A study relating hydrologic conditions, soils, and vegetation of floodplain forests to river flow was conducted in the lower Suwannee River, Florida, from 1996 to 2000. The study was done by the U.S. Geological Survey in cooperation with the Suwannee River Water Management District to help determine the minimum flows and levels required for wetlands protection. The study area included forests within the 10-year floodplain of the Suwannee River from its confluence with the Santa Fe River to the tree line (lower limit of forests) near the Gulf of Mexico, and covered 18,600 hectares (ha) of forests, 75 percent of which were wetlands and 25 percent uplands. The floodplain was divided into three reaches, riverine, upper tidal, and lower tidal, based on changes in hydrology, vegetation, and soils with proximity to the coast. The Suwannee River is the second largest river in Florida in terms of average discharge. Median flow at the confluence of the Suwannee and Santa Fe Rivers is approximately 181 cubic meters per second (m3/s) or 6,480 cubic feet per second (ft3/s) (1933-99). At the upper end of the riverine reach, river stages are unaffected by tides and have a typical annual range of 4.1 meters (m). Tides affect river stages at low and medium flows in the upper tidal reach, and at all flows in the lower tidal reach. Median tidal range at the mouth of the Suwannee River is about 1 m. Salinity of river water in the lower tidal reach increases with decreasing flow and proximity to the Gulf of Mexico. Vertically averaged salinity in the river near the tree line is typically about 5 parts per thousand at medium flow. Land-surface elevation and topographic relief in the floodplain decrease with proximity to the coast. Elevations range from 4.1 to 7.3 m above sea level at the most upstream riverine transect and from 0.3 to 1.3 m above sea level on lower tidal transects. Surface soils in the riverine reach are predominantly mineral and dry soon after floods recede except in swamps. Surface soils in upper and lower tidal reaches are predominantly organic, saturated mucks. In the downstream part of the lower tidal reach, conductivities of surface soils are high enough (greater than 4 milli-mhos per centimeter) to exclude many tree species that are intolerant of salinity. Species richness of canopy and subcanopy plants in wetland forests in the lower Suwannee River is high compared to other river floodplains in North America. A total of 77 tree, shrub, and woody vine species were identified in the canopy and subcanopy of floodplain wetland forests (n = 8,376). Fourteen specific forest types were mapped using digitized aerial photographs, defined from vegetative sampling, and described in terms of plant species composition. For discussion purposes, some specific wetland types were combined, resulting in three general wetland forest types for each reach. Riverine high bottomland hardwoods have higher canopy species richness than all other forest types (40-42 species), with Quercus virginiana the most important canopy tree by basal area. The canopy composition of riverine low bottomland hardwoods is dominated by five species with Quercus laurifolia the most important by basal area. Riverine swamps occur in the lowest and wettest areas with Taxodium distichum the most important canopy species by basal area. Upper tidal bottomland hardwoods are differentiated from riverine forests by the presence of Sabal palmetto in the canopy. Upper tidal mixed forests and swamps are differentiated from riverine forests, in part, by the presence of Fraxinus profunda in the canopy. Nyssa aquatica, the most important canopy species by basal area in upper tidal swamps, is absent from most forests in the lower tidal reach where its distribution is probably restricted by salinity. Hydric hammocks, a wetland type that is rare outside of Florida, are found in the lower tidal reach and are flooded every 1-2 years by either storm surge or river floods. Lowe

Brook trout movement in response to temperature, flow, and thermal refugia within a complex Appalachian riverscape

USGS Publications Warehouse

Petty, J. Todd; Hansbarger, Jeff L.; Huntsman, Brock M.; Mazik, Patricia M.

2012-01-01

We quantified movements of brook trout Salvelinus fontinalis and brown trout Salmo trutta in a complex riverscape characterized by a large, open-canopy main stem and a small, closed-canopy tributary in eastern West Virginia, USA. Our objectives were to quantify the overall rate of trout movement and relate movement behaviors to variation in streamflow, water temperature, and access to coldwater refugia. The study area experienced extremely high seasonal, yearly, and among-stream variability in water temperature and flow. The relative mobility of brook trout within the upper Shavers Fork watershed varied significantly depending on whether individuals resided within the larger main stem or the smaller tributary. The movement rate of trout inhabiting the main stem during summer months (50 m/d) was an order of magnitude higher than that of tributary fish (2 m/d). Movement rates of main-stem-resident brook trout during summer were correlated with the maximum water temperature experienced by the fish and with the fish's initial distance from a known coldwater source. For main-stem trout, use of microhabitats closer to cover was higher during extremely warm periods than during cooler periods; use of microhabitats closer to cover during warm periods was also greater for main-stem trout than for tributary inhabitants. Main-stem-resident trout were never observed in water exceeding 19.5°C. Our study provides some of the first data on brook trout movements in a large Appalachian river system and underscores the importance of managing trout fisheries in a riverscape context. Brook trout conservation in this region will depend on restoration and protection of coldwater refugia in larger river main stems as well as removal of barriers to trout movement near tributary and main-stem confluences.

Field- and Remote Sensing-based Structural Attributes Measured at Multiple Scales Influence the Relationship Between Nitrogen and Reflectance of Forest Canopies

NASA Astrophysics Data System (ADS)

Sullivan, F.; Ollinger, S. V.; Palace, M. W.; Ouimette, A.; Sanders-DeMott, R.; Lepine, L. C.

2017-12-01

The correlation between near-infrared reflectance and forest canopy nitrogen concentration has been demonstrated at varying scales using a range of optical sensors on airborne and satellite platforms. Although the mechanism underpinning the relationship is unclear, at its basis are biologically-driven functional relationships of multiple plant traits that affect canopy chemistry and structure. The link between near-infrared reflectance and canopy nitrogen has been hypothesized to be partially driven by covariation of canopy nitrogen with canopy structure. In this study, we used a combination of airborne LiDAR data and field measured leaf and canopy chemical and structural traits to explore interrelationships between canopy nitrogen, near-infrared reflectance, and canopy structure on plots at Bartlett Experimental Forest in the White Mountain National Forest, New Hampshire. Over each plot, we developed a 1-meter resolution canopy height profile and a 1-meter resolution canopy height model. From canopy height profiles and canopy height models, we calculated a set of metrics describing the plot-level variability, breadth, depth, and arrangement of LiDAR returns. This combination of metrics was used to describe both vertical and horizontal variation in structure. In addition, we developed and measured several field-based metrics of leaf and canopy structure at the plot scale by directly measuring the canopy or by weighting leaf-level metrics by species leaf area contribution. We assessed relationships between leaf and structural metrics, near-infrared reflectance and canopy nitrogen concentration using multiple linear regression and mixed effects modeling. Consistent with our hypothesis, we found moderately strong links between both near-infrared reflectance and canopy nitrogen concentration with LiDAR-derived structural metrics, and we additionally found that leaf-level metrics scaled to the plot level share an important role in canopy reflectance. We suggest that canopy structure has a governing role in canopy reflectance, reducing maximum potential reflectance as structural complexity increases, and therefore also influences the relationship between canopy nitrogen and NIR reflectance.

Measuring forest structure along productivity gradients in the Canadian boreal with small-footprint Lidar.

PubMed

Bolton, Douglas K; Coops, Nicholas C; Wulder, Michael A

2013-08-01

The structure and productivity of boreal forests are key components of the global carbon cycle and impact the resources and habitats available for species. With this research, we characterized the relationship between measurements of forest structure and satellite-derived estimates of gross primary production (GPP) over the Canadian boreal. We acquired stand level indicators of canopy cover, canopy height, and structural complexity from nearly 25,000 km of small-footprint discrete return Light Detection and Ranging (Lidar) data and compared these attributes to GPP estimates derived from the MODerate resolution Imaging Spectroradiometer (MODIS). While limited in our capacity to control for stand age, we removed recently disturbed and managed forests using information on fire history, roads, and anthropogenic change. We found that MODIS GPP was strongly linked to Lidar-derived canopy cover (r = 0.74, p < 0.01), however was only weakly related to Lidar-derived canopy height and structural complexity as these attributes are largely a function of stand age. A relationship was apparent between MODIS GPP and the maximum sampled heights derived from Lidar as growth rates and resource availability likely limit tree height in the prolonged absence of disturbance. The most structurally complex stands, as measured by the coefficient of variation of Lidar return heights, occurred where MODIS GPP was highest as productive boreal stands are expected to contain a wider range of tree heights and transition to uneven-aged structures faster than less productive stands. While MODIS GPP related near-linearly to Lidar-derived canopy cover, the weaker relationships to Lidar-derived canopy height and structural complexity highlight the importance of stand age in determining the structure of boreal forests. We conclude that an improved quantification of how both productivity and disturbance shape stand structure is needed to better understand the current state of boreal forests in Canada and how these forests are changing in response to changing climate and disturbance regimes.

Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopies.

PubMed

Retkute, Renata; Townsend, Alexandra J; Murchie, Erik H; Jensen, Oliver E; Preston, Simon P

2018-05-25

Diurnal changes in solar position and intensity combined with the structural complexity of plant architecture result in highly variable and dynamic light patterns within the plant canopy. This affects productivity through the complex ways that photosynthesis responds to changes in light intensity. Current methods to characterize light dynamics, such as ray-tracing, are able to produce data with excellent spatio-temporal resolution but are computationally intensive and the resulting data are complex and high-dimensional. This necessitates development of more economical models for summarizing the data and for simulating realistic light patterns over the course of a day. High-resolution reconstructions of field-grown plants are assembled in various configurations to form canopies, and a forward ray-tracing algorithm is applied to the canopies to compute light dynamics at high (1 min) temporal resolution. From the ray-tracer output, the sunlit or shaded state for each patch on the plants is determined, and these data are used to develop a novel stochastic model for the sunlit-shaded patterns. The model is designed to be straightforward to fit to data using maximum likelihood estimation, and fast to simulate from. For a wide range of contrasting 3-D canopies, the stochastic model is able to summarize, and replicate in simulations, key features of the light dynamics. When light patterns simulated from the stochastic model are used as input to a model of photoinhibition, the predicted reduction in carbon gain is similar to that from calculations based on the (extremely costly) ray-tracer data. The model provides a way to summarize highly complex data in a small number of parameters, and a cost-effective way to simulate realistic light patterns. Simulations from the model will be particularly useful for feeding into larger-scale photosynthesis models for calculating how light dynamics affects the photosynthetic productivity of canopies.

Multiscale plant wakes, turbulence and non linear scaling flexible effects

NASA Astrophysics Data System (ADS)

Vila, Teresa; Redondo, Jose M.; Velasco, David

2010-05-01

We present velocity ADV measurements and flow visualization of the turbulent wakes behind plant arrays, as these are often fractal in nature, we compare the multifractal spectra and the turbulence structure behind the wakes. Both statistical measures allowing to calculate integral lengthscales and their profiles modified by the plant cannopies [1,2] as well as intermittency and spectral behaviour are also measured [3,4]. We distinguish several momentum transfer mechanisms between the cannopy and the flow, an internal one where lateral turbulent tensions are dominant, and another one just above the plant average height dominated by vertical Reynolds stresses. Visualization of flow over individual plant models show the role of coherent vortices triggered by plant elasticity. The deformation rate of the plants and their Youngs modulus may be correlated with overal plant drag and geometry. This is modified strongly in fractal canopies. Large turbulent integral scales are linked to rugosity and the scaling of the waves.[5,6] Pearlescence experiments where local shear is visualized and numerical simulations of Fractal grids are compared following [7]. [1] Nepf,H.M. Drag, turbulence and diffusion in flow through emergent vegetation. Water Resources Res. 35(2)(1999) [2] Ben Mahjoub,O., Redondo J.M. and Babiano A. Jour.Structure functions in complex flows. Flow Turbulence and Combustion 59, 299-313. [3] El-Hakim, O. Salama, M. Velocity distribution inside and above branched flexible roughness. ASCE Journal of Irrigation and Drainage Engineering, Vol. 118, No 6, (November/December 1992) 914-927. [4] Finnigan,J. Turbulence in plant canopies. Annu. Rev. Fluid Mech. 2000 , Vol. 32: 519-571. [5] Ikeda, S., Kanazawa, M. Three- dimensional organized vortices above flexible water plants. ASCE Journal of Hydraulic Engineering, Vol. 122, No 11, (1996) 634-640. [6] Velasco, D.,Bateman A.,Redondo J.M and Medina V. An open channel flow experimental and theorical study of resistance and turbulent characterization over flexible vegetated linnings. Flow, Turbulence and Combustion. 70, 69-88. [7] Layzet S. Vassilicos C. Vila T and Redondo J.M. I.O.P Fractal grids and wakes, Proceedings on Earth sciences (2009)

Seagrass canopy photosynthetic response is a function of canopy density and light environment: a model for Amphibolis griffithii.

PubMed

Hedley, John D; McMahon, Kathryn; Fearns, Peter

2014-01-01

A three-dimensional computer model of canopies of the seagrass Amphibolis griffithii was used to investigate the consequences of variations in canopy structure and benthic light environment on leaf-level photosynthetic saturation state. The model was constructed using empirical data of plant morphometrics from a previously conducted shading experiment and validated well to in-situ data on light attenuation in canopies of different densities. Using published values of the leaf-level saturating irradiance for photosynthesis, results show that the interaction of canopy density and canopy-scale photosynthetic response is complex and non-linear, due to the combination of self-shading and the non-linearity of photosynthesis versus irradiance (P-I) curves near saturating irradiance. Therefore studies of light limitation in seagrasses should consider variation in canopy structure and density. Based on empirical work, we propose a number of possible measures for canopy scale photosynthetic response that can be plotted to yield isoclines in the space of canopy density and light environment. These plots can be used to interpret the significance of canopy changes induced as a response to decreases in the benthic light environment: in some cases canopy thinning can lead to an equivalent leaf level light environment, in others physiological changes may also be required but these alone may be inadequate for canopy survival. By providing insight to these processes the methods developed here could be a valuable management tool for seagrass conservation during dredging or other coastal developments.

Seagrass Canopy Photosynthetic Response Is a Function of Canopy Density and Light Environment: A Model for Amphibolis griffithii

PubMed Central

Hedley, John D.; McMahon, Kathryn; Fearns, Peter

2014-01-01

A three-dimensional computer model of canopies of the seagrass Amphibolis griffithii was used to investigate the consequences of variations in canopy structure and benthic light environment on leaf-level photosynthetic saturation state. The model was constructed using empirical data of plant morphometrics from a previously conducted shading experiment and validated well to in-situ data on light attenuation in canopies of different densities. Using published values of the leaf-level saturating irradiance for photosynthesis, results show that the interaction of canopy density and canopy-scale photosynthetic response is complex and non-linear, due to the combination of self-shading and the non-linearity of photosynthesis versus irradiance (P-I) curves near saturating irradiance. Therefore studies of light limitation in seagrasses should consider variation in canopy structure and density. Based on empirical work, we propose a number of possible measures for canopy scale photosynthetic response that can be plotted to yield isoclines in the space of canopy density and light environment. These plots can be used to interpret the significance of canopy changes induced as a response to decreases in the benthic light environment: in some cases canopy thinning can lead to an equivalent leaf level light environment, in others physiological changes may also be required but these alone may be inadequate for canopy survival. By providing insight to these processes the methods developed here could be a valuable management tool for seagrass conservation during dredging or other coastal developments. PMID:25347849

Spectrodirectional Investigation of a Geometric-Optical Canopy Reflectance Model by Laboratory Simulation

NASA Astrophysics Data System (ADS)

Stanford, Adam Christopher

Canopy reflectance models (CRMs) can accurately estimate vegetation canopy biophysical-structural information such as Leaf Area Index (LAI) inexpensively using satellite imagery. The strict physical basis which geometric-optical CRMs employ to mathematically link canopy bidirectional reflectance and structure allows for the tangible replication of a CRM's geometric abstraction of a canopy in the laboratory, enabling robust CRM validation studies. To this end, the ULGS-2 goniometer was used to obtain multiangle, hyperspectral (Spectrodirectional) measurements of a specially-designed tangible physical model forest, developed based upon the Geometric-Optical Mutual Shadowing (GOMS) CRM, at three different canopy cover densities. GOMS forward-modelled reflectance values had high levels of agreement with ULGS-2 measurements, with obtained reflectance RMSE values ranging from 0.03% to 0.1%. Canopy structure modelled via GOMS Multiple-Forward-Mode (MFM) inversion had varying levels of success. The methods developed in this thesis can potentially be extended to more complex CRMs through the implementation of 3D printing.

Hydrodynamic behavior in the outer shear layer of partly obstructed open channels

NASA Astrophysics Data System (ADS)

Ben Meftah, Mouldi; De Serio, Francesca; Mossa, Michele

2014-06-01

Despite the many studies on flow in partly obstructed open channels, this issue remains of fundamental importance in order to better understand the interaction between flow behavior and the canopy structure. In the first part of this study we suggest a new theoretical approach able to model the flow pattern within the shear layer in the unobstructed domain, adjacent to the canopy area. Differently from previous studies, the new analytical solution of flow momentum equations takes into account the transversal velocity component of the flow, which is modelled as a linear function of the streamwise velocity. The proposed theoretical model is validated by different experiments carried out on a physical model of a very large rectangular channel by the research group of the Department of Civil, Environmental, Building Engineering and Chemistry of the Technical University of Bari. An array of vertical, rigid, and circular steel cylinders was partially mounted on the bottom in the central part of the flume, leaving two lateral areas of free flow circulation near the walls. The three-dimensional flow velocity components were measured using a 3D Acoustic Doppler Velocimeter. A comparison of the measured and predicted data of the present study with those obtained in other previous studies, carried out with different canopy density, show a non-dependence of this analytical solution on the array density and the Reynolds number. In the second part of the paper, detailed observations of turbulent intensities and spanwise Reynolds stresses in the unobstructed flow are analyzed and discussed. Differently from some earlier studies, it was observed that the peak of the turbulence intensity and that of the spanwise Reynolds stress are significantly shifted toward the center of the shear layer.

Modeling the influence of leaf demography on remotely sensed data using DART and PROSPECT-D

NASA Astrophysics Data System (ADS)

Feret, J. B.; Grau, E.; Barbier, N.; Berveiller, D.; Chave, J.; Durrieu, S.; Gastellu-Etchegorry, J. P.; Hmimina, G.; Lefèvre-Fonollosa, M. J.; Proisy, C.; Soudani, K.; Vincent, G.

2016-12-01

The seasonality of Amazon forest productivity and photosynthetic activity has recently been investigated under a new perspective by a series of publications. The debate about possible factors explaining this seasonality is vivid, and the possibility of several hypotheses has been tested, including canopy phenology and leaf demography, and changes in illumination geometry combined with the complex 3D structure of the canopy. A manifold of measurements and techniques have been used to test these hypotheses, including field observations of leaf demography from ground measured litterfall and phenocam, airborne and satellite remote sensing and 3 dimensional radiative transfer modeling. Our study explores the relative influence of leaf demography and illumination geometry on remotely sensed data. To achieve this, we take advantage of the latest advances in the domain of physical modeling at both leaf and canopy scale. The leaf optical properties model PROSPECT-D was used to model leaf optical properties at various growth stages based on field observations and theoretical leaf biochemical composition during its development and senescence. The 3-dimensional radiative transfer model DART was used to simulate various levels of complexity of canopy covers, from a turbid layer to complex canopy derived from airborne LiDAR acquisitions. Data for leaf demography and ontogeny taken from recent publications was used and integrated into canopy simulations corresponding to year-long observations. Data acquisitions were performed in the frame of the HyperTropik project, funded by CNES, Our results focus on analyzing the influence of separated and combined factors such as illumination geometry, leaf biochemistry and leaf demography on various spectral attributes, including Enhanced vegetation index and hyperspectral metrics.

Predicting the dry deposition of atmospheric aerosol particles onto forests using a size-resolved multi-layer second-order closure model

NASA Astrophysics Data System (ADS)

Huang, C.; Launianen, S.; Gronholm, T.; Katul, G. G.

2013-12-01

Biological aerosol particles are now receiving significant attention given their role in air quality, climate change, and spreading of allergens and other communicable diseases. A major uncertainty in their quantification is associated with complex transport processes governing their generation and removal inside canopies. It has been known for some time now that the commonly used first-order closure to link mean concentration gradients with turbulent fluxes is problematic. The presence of a mean counter-gradient momentum transport in an open trunk space exemplifies such failure. Here, instead of employing K-theory, a size-resolved second-order multilayer model for dry particle deposition is proposed. The starting point of the proposed model is a particle flux budget in which the production, transport, and dissipation terms are modeled. Because these terms require higher-order velocity statistics, this flux budget is coupled with a conventional second-order closure scheme for the flow field within the canopy sub-layer. The failure of conventional K-theory for particle fluxes are explicitly linked to the onset of a mean counter or zero - gradient flow attributed to a significant particle flux transport term. The relative importance of these terms in the particle flux budget and their effects on the foliage particle collection terms for also discussed for each particle size. The proposed model is evaluated against published multi-level measurements of sized-resolved particle fluxes and mean concentration profiles collected within and above a tall Scots pine forest in Hyytiala, Southern Finland. The main findings are that (1) first-order closure schemes may be still plausible for modeling particle deposition velocity, especially in the particle size range smaller than 1 μm when the turbulent particle diffusivity is estimated from higher order flow statistics; (2) the mechanisms leading to the increased trend of particle deposition velocity with increasing friction velocity differ for different particle sizes and different levels (i.e. above and below the canopy); (3) the partitioning of particle deposition onto foliage and forest floor appears insensitive to friction velocity for particles smaller than 100 nm, but decreases with increasing friction velocity for particles large than 100 nm.

Baseflow separation in a premontane transitional rainforest using stable isotope techniques

NASA Astrophysics Data System (ADS)

Miller, G. R.; DuMont, A.; Roark, E.; Cahill, A. T.; Brumbelow, J. K.

2013-12-01

Hydrologic, geologic, and biologic processes are critical to understanding the ecosystem in the tropical premontane transitional forests of Costa Rica. Precipitation is significantly lower during the dry season, and incoming rainfall can be completely intercepted and re-evaporated by the canopy during light events. These canopy processes can affect the rates of runoff and infiltration by changing the quantity and timing of rainfall reaching the ground surface. However, the resulting partitioning of stream water sources between event-water and baseflow from groundwater is not well quantified due to limited accessibility and complex subsurface conditions. This study focuses on research conducted at the Texas A&M Soltis Center for Education and Research, near San Ramón, Costa Rica. We have monitored a 2.2 ha watershed there, measuring precipitation and transpiration rates for over two years, and groundwater levels and stream flow rates for nearly one year. Precipitation rates for the watershed averaged 4.4 m/yr since 2010. Stream flow (runoff, spring flow, and baseflow) averaged 0.09 m^3/sec during the 2012-2013 wet seasons. At 1.2 mm/day, transpiration was a relatively minor component of the water budget. Over a 40-day span during summer 2013, we collected a combination of daily and rain-event based samples from locations throughout the watershed. Sources included: the main stream and two small tributaries, groundwater from piezometers, pore water from suction lysimeters, throughfall and stemflow from under canopy collection systems, and xylem water from 8 tree species across the watershed. We then measured stable isotope fractions (δ18O and δD) in the water using a Picarro L2120i CRDS. Isotope ratios for all surface water averaged -5.50‰ for δ18O and -28.00‰ for δD, while that measured under baseflow conditions were -5.45‰ for δ18O and -29.18‰ for δD. These results indicate that baseflow is the dominate source of stream water even in the wet season. We additionally conclude that despite the ubiquity of low permeability Andisols in this watershed, groundwater transport to the stream is characterized by short residence times attributable to macropore/fracture flow in the subsurface.

Variation of directional reflectance factors with structural changes of a developing alfalfa canopy

NASA Technical Reports Server (NTRS)

Kirchner, J. A.; Kimes, D. S.; Mcmurtrey, J. E., III

1982-01-01

Directional reflectance factors of an alfalfa canopy were determined and related to canopy structure, agronomic variables, and irradiance conditions at four periods during a cutting cycle. Nadir and off-nadir reflectance factors decreased with increasing biomass in Thematic Mapper band 3(0.63-0.69 micrometer) and increased with increasing biomass in band 4(0.76-0.90 micrometer). The sensor view angle had less impact on perceived reflectance as the alfalfa progressed from an erectophile canopy of stems after harvest to a near planophile canopy of leaves at maturity. Studies of directional reflectance are needed for testing and upgrading vegetation canopy models and to aid in the complex interpretation problems presented by aircraft scanners and pointable satellites where illumination and viewing geometries may vary widely. Distinct changes in the patterns of radiance observed by a sensor as structural and biomass changes occur are keys to monitoring the growth and condition of crops.

Numerical Study of the Response of an Atmospheric Surface Layer to a Spatially Nonuniform Plant Canopy

NASA Astrophysics Data System (ADS)

Qiu, J.; Gu, Z. L.; Wang, Z. S.

2008-05-01

High-accuracy large-eddy simulations of neutral atmospheric surface-layer flow over a gapped plant canopy strip have been performed. Subgrid-scale (SGS) motions are parameterized by the Sagaut mixed length SGS model, with a modification to compute the SGS characteristic length self-adaptively. Shaw’s plant canopy model, taking the vertical variation of leaf area density into account, is applied to study the response of the atmospheric surface layer to the gapped dense forest strip. Differences in the region far away from the gap and in the middle of the gap are investigated, according to the instantaneous velocity magnitude, the zero-plane displacement, the potential temperature and the streamlines. The large-scale vortex structure, in the form of a roll vortex, is revealed in the region far away from the gap. The nonuniform spatial distribution of plants appears to cause the formation of the coherent structure. The roll vortex starts in the wake of the canopy, and results in strong fluctuations throughout the entire canopy region. Wind sweeps and ejections in the plant canopy are also attributed to the large vortex structure.

Ground and flight test program of a Stokes-flow parachute: Packaging, deployment, and sounding rocket integration

NASA Technical Reports Server (NTRS)

Niederer, P. G.; Mihora, D. J.

1972-01-01

The current design and hardware components of the patented 14 sqm Stokes flow parachute are described. The Stokes-flow parachute is a canopy of open mesh material, which is kept deployed by braces. Because of the light weight of its mesh material, and the high drag on its mesh elements when they operate in the Stokes-flow flight regime, this parachute has an extremely low ballistic coefficient. It provides a stable aerodynamic platform superior to conventional nonporous billowed parachutes, is exceptionally packable, and is easily contained within the canister of the Sidewinder Arcas or the RDT and E rockets. Thus, it offers the potential for gathering more meteorological data, especially at high altitudes, than conventional billowed parachutes. Methods for packaging the parachute are also recommended. These methods include schemes for folding the canopy and for automatically releasing the pressurizing fluid as the packaged parachute unfolds.

Momentum and particle transport in a nonhomogenous canopy

NASA Astrophysics Data System (ADS)

Gould, Andrew W.

Turbulent particle transport through the air plays an important role in the life cycle of many plant pathogens. In this study, data from a field experiment was analyzed to explore momentum and particle transport within a grape vineyard. The overall goal of these experiments was to understand how the architecture of a sparse agricultural canopy interacts with turbulent flow and ultimately determines the dispersion of airborne fungal plant pathogens. Turbulence in the vineyard canopy was measured using an array of four sonic anemometers deployed at heights z/H 0.4, 0.9, 1.45, and 1.95 where z is the height of the each sonic and H is the canopy height. In addition to turbulence measurements from the sonic anemometers, particle dispersion was measured using inert particles with the approximate size and density of powdery mildew spores and a roto-rod impaction trap array. Measurements from the sonic anemometers demonstrate that first and second order statistics of the wind field are dependent on wind direction orientation with respect to vineyard row direction. This dependence is a result of wind channeling which transfers energy between the velocity components when the wind direction is not aligned with the rows. Although the winds have a strong directional dependence, spectra analysis indicates that the structure of the turbulent flow is not fundamentally altered by the interaction between wind direction and row direction. Examination of a limited number of particle release events indicates that the wind turning and channeling observed in the momentum field impacts particle dispersion. For row-aligned flow, particle dispersion in the direction normal to the flow is decreased relative to the plume spread predicted by a standard Gaussian plume model. For flow that is not aligned with the row direction, the plume is found to rotate in the same manner as the momentum field.

Explosive Fracturing of an F-16 Canopy for Through-Canopy Crew Egress

NASA Technical Reports Server (NTRS)

Bement, Laurence J.

2000-01-01

Through-canopy crew egress, such as in the Harrier (AV-8B) aircraft, expands escape envelopes by reducing seat ejection delays in waiting for canopy jettison. Adverse aircraft attitude and reduced forward flight speed can further increase the times for canopy jettison. However, the advent of heavy, high-strength polycarbonate canopies for bird-strike resistance has not only increased jettison times, but has made seat penetration impossible. The goal of the effort described in this paper was to demonstrate a method of explosively fracturing the F-16 polycarbonate canopy to allow through-canopy crew ejection. The objectives of this effort were to: 1. Mount the explosive materials on the exterior of the canopy within the mold line, 2. Minimize visual obstructions, 3. Minimize internal debris on explosive activation, 4. Operate within less than 10 ms, 5. Maintain the shape of the canopy after functioning to prevent major pieces from entering the cockpit, and 6. Minimize the resistance of the canopy to seat penetration. All goals and objectives were met in a full-scale test demonstration. In addition to expanding crew escape envelopes, this canopy fracture approach offers the potential for reducing system complexity, weight and cost, while increasing overall reliability, compared to current canopy jettison approaches. To comply with International Traffic in Arms Regulations (ITAR) and permit public disclosure, this document addresses only the principles of explosive fracturing of the F-16 canopy materials and the end result. ITAR regulations restrict information on improving the performance of weapon systems. Therefore, details on the explosive loads and final assembly of this canopy fracture approach, necessary to assure functional performance, are not included.

Axial and radial water transport and internal water storage in tropical forest canopy trees.

Treesearch

Shelley A. James; Frederick C. Meinzer; Guillermo Goldstein; David Woodruff; Timothy Jones; Teresa Restom; Monica Mejia; Michael Clearwater; Paula Campanello

2003-01-01

Heat and stable isotope tracers were used to study axial and radial water transport in relation to sapwood anatomical characteristics and internal water storage in four canopy tree species of a seasonally dry tropical forest in Panama. Anatomical characteristics of the wood and radial profiles of sap flow were measured at the base, upper trunk, and crown of a single...

Forests and Their Canopies: Achievements and Horizons in Canopy Science.

PubMed

Nakamura, Akihiro; Kitching, Roger L; Cao, Min; Creedy, Thomas J; Fayle, Tom M; Freiberg, Martin; Hewitt, C N; Itioka, Takao; Koh, Lian Pin; Ma, Keping; Malhi, Yadvinder; Mitchell, Andrew; Novotny, Vojtech; Ozanne, Claire M P; Song, Liang; Wang, Han; Ashton, Louise A

2017-06-01

Forest canopies are dynamic interfaces between organisms and atmosphere, providing buffered microclimates and complex microhabitats. Canopies form vertically stratified ecosystems interconnected with other strata. Some forest biodiversity patterns and food webs have been documented and measurements of ecophysiology and biogeochemical cycling have allowed analyses of large-scale transfer of CO 2 , water, and trace gases between forests and the atmosphere. However, many knowledge gaps remain. With global research networks and databases, and new technologies and infrastructure, we envisage rapid advances in our understanding of the mechanisms that drive the spatial and temporal dynamics of forests and their canopies. Such understanding is vital for the successful management and conservation of global forests and the ecosystem services they provide to the world. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Effect of canopy architectural variation on transpiration and thermoregulation

NASA Astrophysics Data System (ADS)

Linn, R.; Banerjee, T.

2017-12-01

One of the major scientific questions identified by the NGEE - Tropics campaign is the effect of disturbances such as forest fires, vegetation thinning and land use change on carbon, water and energy fluxes. Answers to such questions can help develop effective forest management strategies and shape policies to mitigate damages under natural and anthropogenic climate change. The absence of horizontal and vertical variation of forest canopy structure in current models is a major source of uncertainty in answering these questions. The current work addresses this issue through a bottom up process based modeling approach to systematically investigate the effect of forest canopy architectural variation on plant physiological response as well as canopy level fluxes. A plant biophysics formulation is used which is based on the following principles: (1) a model for the biochemical demand for CO2 as prescribed by photosynthesis models. This model can differentiate between photosynthesis under light-limited and nutrient-limited scenarios. (2) A Fickian mass transfer model including transfer through the laminar boundary layer on leaves that may be subjected to forced or free convection depending upon the mean velocity and the radiation load; (3) an optimal leaf water use strategy that maximizes net carbon gain for a given transpiration rate to describe the stomatal aperture variation; (4) a leaf-level energy balance to accommodate evaporative cooling. Such leaf level processes are coupled to solutions of atmospheric flow through vegetation canopies. In the first test case, different scenarios of top heavy and bottom heavy (vertical) foliage distributions are investigated within a one-dimensional framework where no horizontal heterogeneity of canopy structure is considered. In another test case, different spatial distributions (both horizontal and vertical) of canopy geometry (land use) are considered, where flow solutions using large eddy simulations (LES) are coupled to the aforementioned leaf level physiological model. The systematic differences observed across these simulated scenarios provide a clear insight of disturbance effects of forest-atmosphere interaction.

Water-Channel Estimation of Eulerian and Lagrangian Time Scales of the Turbulence in Idealized Two-Dimensional Urban Canopies

NASA Astrophysics Data System (ADS)

Di Bernardino, Annalisa; Monti, Paolo; Leuzzi, Giovanni; Querzoli, Giorgio

2017-11-01

Lagrangian and Eulerian statistics are obtained from a water-channel experiment of an idealized two-dimensional urban canopy flow in neutral conditions. The objective is to quantify the Eulerian (TE) and Lagrangian (TL) time scales of the turbulence above the canopy layer as well as to investigate their dependence on the aspect ratio of the canopy, AR, as the latter is the ratio of the width ( W) to the height ( H) of the canyon. Experiments are also conducted for the case of flat terrain, which can be thought of as equivalent to a classical one-directional shear flow. The values found for the Eulerian time scales on flat terrain are in agreement with previous numerical results found in the literature. It is found that both the streamwise and vertical components of the Lagrangian time scale, T_u^L and T_w^L , follow Raupach's linear law within the constant-flux layer. The same holds true for T_w^L in both the canopies analyzed (AR= 1 and AR= 2) and also for T_u^L when AR = 1. In contrast, for AR = 2, T_u^L follows Raupach's law only above z=2H. Below that level, T_u^L is nearly constant with height, showing at z=H a value approximately one order of magnitude greater than that found for AR = 1. It is shown that the assumption usually adopted for flat terrain, that β =TL/TE is proportional to the inverse of the turbulence intensity, also holds true even for the canopy flow in the constant-flux layer. In particular, γ /i_u fits well β _u =T_u^L /T_u^E in both the configurations by choosing γ to be 0.35 (here, i_u =σ _u / \\bar{u} , where \\bar{u} and σ _u are the mean and the root-mean-square of the streamwise velocity component, respectively). On the other hand, β _w =T_w^L /T_w^E follows approximately γ /i_w =0.65/( {σ _w /\\bar{u} } ) for z > 2H, irrespective of the AR value. The second main objective is to estimate other parameters of interest in dispersion studies, such as the eddy diffusivity of momentum (KT) and the Kolmogorov constant (C_0). It is found that C_0 depends appreciably on the velocity component both for the flat terrain and canopy flow, even though for the latter case it is insensitive to AR values. In all the three experimental configurations analyzed here, KT shows an overall linear growth with height in agreement with the linear trend predicted by Prandtl's theory.

Wake Dynamics in the Atmospheric Boundary Layer Over Complex Terrain

NASA Astrophysics Data System (ADS)

Markfort, Corey D.

The goal of this research is to advance our understanding of atmospheric boundary layer processes over heterogeneous landscapes and complex terrain. The atmospheric boundary layer (ABL) is a relatively thin (˜ 1 km) turbulent layer of air near the earth's surface, in which most human activities and engineered systems are concentrated. Its dynamics are crucially important for biosphere-atmosphere couplings and for global atmospheric dynamics, with significant implications on our ability to predict and mitigate adverse impacts of land use and climate change. In models of the ABL, land surface heterogeneity is typically represented, in the context of Monin-Obukhov similarity theory, as changes in aerodynamic roughness length and surface heat and moisture fluxes. However, many real landscapes are more complex, often leading to massive boundary layer separation and wake turbulence, for which standard models fail. Trees, building clusters, and steep topography produce extensive wake regions currently not accounted for in models of the ABL. Wind turbines and wind farms also generate wakes that combine in complex ways to modify the ABL. Wind farms are covering an increasingly significant area of the globe and the effects of large wind farms must be included in regional and global scale models. Research presented in this thesis demonstrates that wakes caused by landscape heterogeneity must be included in flux parameterizations for momentum, heat, and mass (water vapor and trace gases, e.g. CO2 and CH4) in ABL simulation and prediction models in order to accurately represent land-atmosphere interactions. Accurate representation of these processes is crucial for the predictions of weather, air quality, lake processes, and ecosystems response to climate change. Objectives of the research reported in this thesis are: 1) to investigate turbulent boundary layer adjustment, turbulent transport and scalar flux in wind farms of varying configurations and develop an improved modeling framework for wind farm - atmosphere interaction, 2) to determine how heterogeneous patches of forest affect the structure of the ABL and its interactions with clearings and water bodies, 3) to investigate how landscape heterogeneity, including wakes, may be parameterized in regional-scale weather and climate models to improve the representation of surface fluxes, e.g. from lakes/wetlands and forest clearings. To achieve these objectives, this research employs an interdisciplinary strategy, utilizing concepts and methods from fluid mechanics, micrometeorology, ecosystem ecology and environmental sciences, and combines laboratory and field experiments. In particular, a) wind tunnel experiments of flow through and over model wind farms and model forest canopies were used to improve our fundamental understanding of how wakes affect land-atmosphere coupling, including surface fluxes, after wind farm installation and for heterogeneous landscapes of canopies and clearings or lakes, and b) extensive field studies over lakes and wetlands were undertaken to study the effects of wakes downwind of forest canopies and the effect of wind sheltering on lake stratification dynamics and gas fluxes. These experiments were also used to improve and validate numerical simulation techniques for the atmospheric boundary layer, specifically the large eddy simulation technique, which is used to simulate flow in wind farms and flow over heterogeneous terrain.

Effect of vertical canopy architecture on transpiration, thermoregulation and carbon assimilation

DOE PAGES

Banerjee, Tirtha; Linn, Rodman Ray

2018-04-11

Quantifying the impact of natural and anthropogenic disturbances such as deforestation, forest fires and vegetation thinning among others on net ecosystem—atmosphere exchanges of carbon dioxide, water vapor and heat—is an important aspect in the context of modeling global carbon, water and energy cycles. The absence of canopy architectural variation in horizontal and vertical directions is a major source of uncertainty in current climate models attempting to address these issues. This work demonstrates the importance of considering the vertical distribution of foliage density by coupling a leaf level plant biophysics model with analytical solutions of wind flow and light attenuation inmore » a horizontally homogeneous canopy. It is demonstrated that plant physiological response in terms of carbon assimilation, transpiration and canopy surface temperature can be widely different for two canopies with the same leaf area index (LAI) but different leaf area density distributions, under several conditions of wind speed, light availability, soil moisture availability and atmospheric evaporative demand.« less

Effect of vertical canopy architecture on transpiration, thermoregulation and carbon assimilation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Banerjee, Tirtha; Linn, Rodman Ray

Quantifying the impact of natural and anthropogenic disturbances such as deforestation, forest fires and vegetation thinning among others on net ecosystem—atmosphere exchanges of carbon dioxide, water vapor and heat—is an important aspect in the context of modeling global carbon, water and energy cycles. The absence of canopy architectural variation in horizontal and vertical directions is a major source of uncertainty in current climate models attempting to address these issues. This work demonstrates the importance of considering the vertical distribution of foliage density by coupling a leaf level plant biophysics model with analytical solutions of wind flow and light attenuation inmore » a horizontally homogeneous canopy. It is demonstrated that plant physiological response in terms of carbon assimilation, transpiration and canopy surface temperature can be widely different for two canopies with the same leaf area index (LAI) but different leaf area density distributions, under several conditions of wind speed, light availability, soil moisture availability and atmospheric evaporative demand.« less

Free-air fumigation of mature trees. A novel system for controlled ozone enrichment in grown-up beech and spruce canopies.

PubMed

Werner, Herbert; Fabian, Peter

2002-01-01

A novel system for continuous and controlled free-air fumigation of mature tree canopies with ozone is described. Ozone generated from oxygen is diluted with air in a pressurized tank and conducted into the canopies by a system of 100 PTFE tubes hanging down from a grid fixed above the crowns. With 45 calibrated outlets per tube providing a constant flow of 0.3 l/min each, a total volume of about 10*10*15 m3 comprising 5 beech and 5 spruce canopies is fumigated. The spatial ozone distribution in the fumigated volume as well as surrounding reference tree canopies is controlled by continuous measuring instruments installed at 4 levels and a dense array of passive samplers. The system will later be used for CO2 fumigation as well. Results of the first year of continuous operation, with 2 * ambient ozone levels having been achieved, are reported.

Comparisons of xylem sap flow and water vapour flux at the stand level and derivation of canopy conductance for Scots pine

NASA Astrophysics Data System (ADS)

Granier, A.; Biron, P.; Köstner, B.; Gay, L. W.; Najjar, G.

1996-03-01

Simultaneous measurements of xylem sap flow and water vapour flux over a Scots pine ( Pinus sylvestris) forest (Hartheim, Germany), were carried out during the Hartheim Experiment (HartX), an intensive observation campaign of the international programme REKLIP. Sap flow was measured every 30 min using both radial constant heating (Granier, 1985) and two types of Cermak sap flowmeters installed on 24 trees selected to cover a wide range of the diameter classes of the stand (min 8 cm; max 17.5 cm). Available energy was high during the observation period (5.5 to 6.9 mm.day-1), and daily cumulated sap flow on a ground area basis varied between 2.0 and 2.7 mm day-1 depending on climate conditions. Maximum hourly values of sap flow reached 0.33 mm h-1, i.e., 230 W m-2. Comparisons of sap flow with water vapour flux as measured with two OPEC (One Propeller Eddy Correlation, University of Arizona) systems showed a time lag between the two methods, sap flow lagging about 90 min behind vapour flux. After taking into account this time lag in the sap flow data set, a good agreement was found between both methods: sap flow = 0.745* vapour flux, r 2 = 0.86. The difference between the two estimates was due to understory transpiration. Canopy conductance ( g c ) was calculated from sap flow measurements using the reverse form of Penman-Monteith equation and climatic data measured 4 m above the canopy. Variations of g c were well correlated ( r 2 = 0.85) with global radiation ( R) and vapour pressure deficit ( vpd). The quantitative expression for g c = f ( R, vpd) was very similar to that previously found with maritime pine ( Pinus pinaster) in the forest of Les Landes, South Western France.

Physical robustness of canopy temperature models for crop heat stress simulation across environments and production conditions

USDA-ARS?s Scientific Manuscript database

Despite widespread application in studying climate change impacts, most crop models ignore complex interactions among air temperature, crop and soil water status, CO2 concentration and atmospheric conditions that influence crop canopy temperature. The current study extended previous studies by evalu...

Interactions between a fractal tree-like object and hydrodynamic turbulence: flow structure and characteristic mixing length

NASA Astrophysics Data System (ADS)

Meneveau, C. V.; Bai, K.; Katz, J.

2011-12-01

The vegetation canopy has a significant impact on various physical and biological processes such as forest microclimate, rainfall evaporation distribution and climate change. Most scaled laboratory experimental studies have used canopy element models that consist of rigid vertical strips or cylindrical rods that can be typically represented through only one or a few characteristic length scales, for example the diameter and height for cylindrical rods. However, most natural canopies and vegetation are highly multi-scale with branches and sub-branches, covering a wide range of length scales. Fractals provide a convenient idealization of multi-scale objects, since their multi-scale properties can be described in simple ways (Mandelbrot 1982). While fractal aspects of turbulence have been studied in several works in the past decades, research on turbulence generated by fractal objects started more recently. We present an experimental study of boundary layer flow over fractal tree-like objects. Detailed Particle-Image-Velocimetry (PIV) measurements are carried out in the near-wake of a fractal-like tree. The tree is a pre-fractal with five generations, with three branches and a scale reduction factor 1/2 at each generation. Its similarity fractal dimension (Mandelbrot 1982) is D ~ 1.58. Detailed mean velocity and turbulence stress profiles are documented, as well as their downstream development. We then turn attention to the turbulence mixing properties of the flow, specifically to the question whether a mixing length-scale can be identified in this flow, and if so, how it relates to the geometric length-scales in the pre-fractal object. Scatter plots of mean velocity gradient (shear) and Reynolds shear stress exhibit good linear relation at all locations in the flow. Therefore, in the transverse direction of the wake evolution, the Boussinesq eddy viscosity concept is appropriate to describe the mixing. We find that the measured mixing length increases with increasing streamwise locations. Conversely, the measured eddy viscosity and mixing length decrease with increasing elevation, which differs from eddy viscosity and mixing length behaviors of traditional boundary layers or canopies studied before. In order to find an appropriate length for the flow, several models based on the notion of superposition of scales are proposed and examined. One approach is based on spectral distributions. Another more practical approach is based on length-scale distributions evaluated using fractal geometry tools. These proposed models agree well with the measured mixing length. The results indicate that information about multi-scale clustering of branches as it occurs in fractals has to be incorporated into models of the mixing length for flows through canopies with multiple scales. The research is supported by National Science Foundation grant ATM-0621396 and AGS-1047550.

Variation in canopy duration in the perennial biofuel crop Miscanthus reveals complex associations with yield.

PubMed

Robson, Paul R H; Farrar, Kerrie; Gay, Alan P; Jensen, Elaine F; Clifton-Brown, John C; Donnison, Iain S

2013-05-01

Energy crops can provide a sustainable source of power and fuels, and mitigate the negative effects of CO2 emissions associated with fossil fuel use. Miscanthus is a perennial C4 energy crop capable of producing large biomass yields whilst requiring low levels of input. Miscanthus is largely unimproved and therefore there could be significant opportunities to increase yield. Further increases in yield will improve the economics, energy balance, and carbon mitigation of the crop, as well as reducing land-take. One strategy to increase yield in Miscanthus is to maximize the light captured through an extension of canopy duration. In this study, canopy duration was compared among a diverse collection of 244 Miscanthus genotypes. Canopy duration was determined by calculating the number of days between canopy establishment and senescence. Yield was positively correlated with canopy duration. Earlier establishment and later senescence were also both separately correlated with higher yield. However, although genotypes with short canopy durations were low yielding, not all genotypes with long canopy durations were high yielding. Differences of yield between genotypes with long canopy durations were associated with variation in stem and leaf traits. Different methodologies to assess canopy duration traits were investigated, including visual assessment, image analysis, light interception, and different trait thresholds. The highest correlation coefficients were associated with later assessments of traits and the use of quantum sensors for canopy establishment. A model for trait optimization to enable yield improvement in Miscanthus and other bioenergy crops is discussed.

Variation in canopy duration in the perennial biofuel crop Miscanthus reveals complex associations with yield

PubMed Central

Robson, Paul R.H.; Farrar, Kerrie; Gay, Alan P.; Jensen, Elaine F.; Clifton-Brown, John C.; Donnison, Iain S.

2013-01-01

Energy crops can provide a sustainable source of power and fuels, and mitigate the negative effects of CO2 emissions associated with fossil fuel use. Miscanthus is a perennial C4 energy crop capable of producing large biomass yields whilst requiring low levels of input. Miscanthus is largely unimproved and therefore there could be significant opportunities to increase yield. Further increases in yield will improve the economics, energy balance, and carbon mitigation of the crop, as well as reducing land-take. One strategy to increase yield in Miscanthus is to maximize the light captured through an extension of canopy duration. In this study, canopy duration was compared among a diverse collection of 244 Miscanthus genotypes. Canopy duration was determined by calculating the number of days between canopy establishment and senescence. Yield was positively correlated with canopy duration. Earlier establishment and later senescence were also both separately correlated with higher yield. However, although genotypes with short canopy durations were low yielding, not all genotypes with long canopy durations were high yielding. Differences of yield between genotypes with long canopy durations were associated with variation in stem and leaf traits. Different methodologies to assess canopy duration traits were investigated, including visual assessment, image analysis, light interception, and different trait thresholds. The highest correlation coefficients were associated with later assessments of traits and the use of quantum sensors for canopy establishment. A model for trait optimization to enable yield improvement in Miscanthus and other bioenergy crops is discussed. PMID:23599277

Reducing Uncertainty in Transpiration Estimation in Wet Tropical Forests and Upscaling Sap Flux Measurements in Complex Heterogeneous Systems

NASA Astrophysics Data System (ADS)

Moore, G. W.; Aparecido, L. M. T.; Jaimes, A.

2017-12-01

High tree species and functional diversity, complex age and stand structure, deeper active sapwood, and potential factors that reduce transpiration, such as frequent cloud cover and wet leaves are inherent in wet tropical forests. In face of these unique challenges, advancements are needed for optimizing in situ measurement strategies to reduce uncertainties, in particular, within-tree and among-tree variation. Over a five-year period, we instrumented 44 trees with heat dissipation sap flow sensors within a premontane wet tropical rainforest in Costa Rica (5000 mm MAP). Sensors were systematically apportioned among overstory, midstory, and suppressed trees. In a subset of dominant trees, radial profiles across the full range of active xylem were fitted as deep as 16 cm. Given high diversity, few instrumented trees belonged to the same species, genus, or even family. Leaf surfaces were wet 20-80% of daylight hours from the top to bottom of the canopy, respectively. As a result, transpiration was suppressed, even after accounting for lower vapor pressure deficit (<0.5 kPa) and reduced solar radiation (<500 W m-1). To the contrary, the driest month on record resulted in higher, not lower transpiration. We identified multiple functional types according to patterns in dry season water use for the period February to April, 2016 using Random Forest analysis to discriminate groups with unique temporal responses. These efforts are critical for improving global land surface models that increasingly partition canopy components within complex heterogeneous systems, and for improved accuracy of transpiration estimates in tropical forests.

Effect of wakes on land-atmosphere fluxes

NASA Astrophysics Data System (ADS)

Markfort, C. D.; Zhang, W.; Porte-Agel, F.; Stefan, H. G.

2011-12-01

Wakes affect land-atmosphere fluxes of momentum and scalars, including water vapor and trace gases. Canopies and bluff bodies, including forests, buildings and topography, cause boundary layer flow separation, significantly extend flow recovery, and lead to a break down of standard Monin-Obukhov similarity relationships in the atmospheric boundary layer (ABL). Wakes generated by these land surface features persist for significant distances affecting a large fraction of the Earth's terrestrial surface. This effect is currently not accounted for in land-atmosphere modeling, and little is known about how heterogeneity of wake-generating features effect land surface fluxes. Additionally flux measurements, made in wake-affected regions, do not satisfy the homogeneous requirements for the standard eddy correlation (EC) method. This phenomenon often referred to as sheltering has been shown to affect momentum and kinetic energy fluxes into lakes from the atmosphere (Markfort et al. 2010). This presentation will highlight results from controlled wind tunnel experiments of neutral and thermally stratified boundary layers, using PIV and custom x-wire/cold-wire anemometry, designed to understand how the physical structure of upstream bluff bodies or porous canopies and thermal stability affect the separation zone, boundary layer recovery and surface fluxes. We also compare these results to field measurements taken with a Doppler LiDAR in the wake of a canopy and a building. We have found that there is a nonlinear relationship between porosity and flow separation behind a canopy to clearing transition. Results will provide the basis for new parameterizations to account for wake effects on land-atmosphere fluxes and corrections for EC measurements over open fields, lakes, and wetlands.

Modelling the vertical distribution of canopy fuel load using national forest inventory and low-density airbone laser scanning data.

PubMed

González-Ferreiro, Eduardo; Arellano-Pérez, Stéfano; Castedo-Dorado, Fernando; Hevia, Andrea; Vega, José Antonio; Vega-Nieva, Daniel; Álvarez-González, Juan Gabriel; Ruiz-González, Ana Daría

2017-01-01

The fuel complex variables canopy bulk density and canopy base height are often used to predict crown fire initiation and spread. Direct measurement of these variables is impractical, and they are usually estimated indirectly by modelling. Recent advances in predicting crown fire behaviour require accurate estimates of the complete vertical distribution of canopy fuels. The objectives of the present study were to model the vertical profile of available canopy fuel in pine stands by using data from the Spanish national forest inventory plus low-density airborne laser scanning (ALS) metrics. In a first step, the vertical distribution of the canopy fuel load was modelled using the Weibull probability density function. In a second step, two different systems of models were fitted to estimate the canopy variables defining the vertical distributions; the first system related these variables to stand variables obtained in a field inventory, and the second system related the canopy variables to airborne laser scanning metrics. The models of each system were fitted simultaneously to compensate the effects of the inherent cross-model correlation between the canopy variables. Heteroscedasticity was also analyzed, but no correction in the fitting process was necessary. The estimated canopy fuel load profiles from field variables explained 84% and 86% of the variation in canopy fuel load for maritime pine and radiata pine respectively; whereas the estimated canopy fuel load profiles from ALS metrics explained 52% and 49% of the variation for the same species. The proposed models can be used to assess the effectiveness of different forest management alternatives for reducing crown fire hazard.

Solution of the Fokker-Planck equation in a wind turbine array boundary layer

NASA Astrophysics Data System (ADS)

Melius, Matthew S.; Tutkun, Murat; Cal, Raúl Bayoán

2014-07-01

Hot-wire velocity signals from a model wind turbine array boundary layer flow wind tunnel experiment are analyzed. In confirming Markovian properties, a description of the evolution of the probability density function of velocity increments via the Fokker-Planck equation is attained. Solution of the Fokker-Planck equation is possible due to the direct computation of the drift and diffusion coefficients from the experimental measurement data which were acquired within the turbine canopy. A good agreement is observed in the probability density functions between the experimental data and numerical solutions resulting from the Fokker-Planck equation, especially in the far-wake region. The results serve as a tool for improved estimation of wind velocity within the array and provide evidence that the evolution of such a complex and turbulent flow is also governed by a Fokker-Planck equation at certain scales.

Flow Visualization Techniques in Wind Tunnel Tests of a Full-Scale F/A-18 Aircraft

NASA Technical Reports Server (NTRS)

Lanser, Wendy R.; Botha, Gavin J.; James, Kevin D.; Bennett, Mark; Crowder, James P.; Cooper, Don; Olson, Lawrence (Technical Monitor)

1994-01-01

The proposed paper presents flow visualization performed during experiments conducted on a full-scale F/A-18 aircraft in the 80- by 120-Foot Wind-Tunnel at NASA Ames Research Center. The purpose of the flow-visualization experiments was to document the forebody and leading edge extension (LEX) vortex interaction along with the wing flow patterns at high angles of attack and low speed high Reynolds number conditions. This investigation used surface pressures in addition to both surface and off-surface flow visualization techniques to examine the flow field on the forebody, canopy, LEXS, and wings. The various techniques used to visualize the flow field were fluorescent tufts, flow cones treated with reflective material, smoke in combination with a laser light sheet, and a video imaging system for three-dimension vortex tracking. The flow visualization experiments were conducted over an angle of attack range from 20 deg to 45 deg and over a sideslip range from -10 deg to 10 deg. The various visualization techniques as well as the pressure distributions were used to understand the flow field structure. The results show regions of attached and separated flow on the forebody, canopy, and wings as well as the vortical flow over the leading-edge extensions. This paper will also present flow visualization comparisons with the F-18 HARV flight vehicle and small-scale oil flows on the F-18.

Turbulent Intensities and Velocity Spectra for Bare and Forested Gentle Hills: Flume Experiments

NASA Astrophysics Data System (ADS)

Poggi, Davide; Katul, Gabriel G.

2008-10-01

To investigate how velocity variances and spectra are modified by the simultaneous action of topography and canopy, two flume experiments were carried out on a train of gentle cosine hills differing in surface cover. The first experiment was conducted above a bare surface while the second experiment was conducted within and above a densely arrayed rod canopy. The velocity variances and spectra from these two experiments were compared in the middle, inner, and near-surface layers. In the middle layer, and for the canopy surface, longitudinal and vertical velocity variances ({σ_u^2,σ_w^2}) were in phase with the hill-induced spatial mean velocity perturbation (Δ u) around the so-called background state (taken here as the longitudinal mean at a given height) as predicted by rapid distortion theory (RDT). However, for the bare surface case, {σ_u^2 } and {σ_w^2 } remained out of phase with Δ u by about L/2, where L is the hill half-length. In the canopy layer, wake production was a significant source of turbulent energy for {σ_w^2 } , and its action was to re-align velocity variances with Δ u in those layers, a mechanism completely absent for the bare surface case. Such a lower ‘boundary condition’ resulted in longitudinal variations of {σ_w^2} to be nearly in phase with Δ u above the canopy surface. In the inner and middle layers, the spectral distortions by the hill remained significant for the background state of the bare surface case but not for the canopy surface case. In particular, in the inner and middle layers of the bare surface case, the effective exponents derived from the locally measured power spectra diverged from their expected - 5/3 value for inertial subrange scales. These departures spatially correlated with the hill surface. However, for the canopy surface case, the spectral exponents were near - 5/3 above the canopy though the minor differences from - 5/3 were also correlated with the hill surface. Inside the canopy, wake production and energy short-circuiting resulted in significant departures from - 5/3. These departures from - 5/3 also appeared correlated with the hill surface through the wake production contribution and its alignment with Δ u. Moreover, scales commensurate with Von Karman street vorticies well described wake production scales inside the canopy, confirming the important role of the mean flow in producing wakes. The spectra inside the canopy on the lee side of the hill, where a negative mean flow delineated a recirculation zone, suggested that the wake production scales there were ‘broader’ when compared to their counterpart outside the recirculation zone. Inside the recirculation zone, there was significantly more energy at higher frequencies when compared to regions outside the recirculation zone.

Adjustment of Turbulent Boundary-Layer Flow to Idealized Urban Surfaces: A Large-Eddy Simulation Study

NASA Astrophysics Data System (ADS)

Cheng, Wai-Chi; Porté-Agel, Fernando

2015-05-01

Large-eddy simulations (LES) are performed to simulate the atmospheric boundary-layer (ABL) flow through idealized urban canopies represented by uniform arrays of cubes in order to better understand atmospheric flow over rural-to-urban surface transitions. The LES framework is first validated with wind-tunnel experimental data. Good agreement between the simulation results and the experimental data are found for the vertical and spanwise profiles of the mean velocities and velocity standard deviations at different streamwise locations. Next, the model is used to simulate ABL flows over surface transitions from a flat homogeneous terrain to aligned and staggered arrays of cubes with height . For both configurations, five different frontal area densities , equal to 0.028, 0.063, 0.111, 0.174 and 0.250, are considered. Within the arrays, the flow is found to adjust quickly and shows similar structure to the wake of the cubes after the second row of cubes. An internal boundary layer is identified above the cube arrays and found to have a similar depth in all different cases. At a downstream location where the flow immediately above the cube array is already adjusted to the surface, the spatially-averaged velocity is found to have a logarithmic profile in the vertical. The values of the displacement height are found to be quite insensitive to the canopy layout (aligned vs. staggered) and increase roughly from to as increases from 0.028 to 0.25. Relatively larger values of the aerodynamic roughness length are obtained for the staggered arrays, compared with the aligned cases, and a maximum value of is found at for both configurations. By explicitly calculating the drag exerted by the cubes on the flow and the drag coefficients of the cubes using our LES results, and comparing the results with existing theoretical expressions, we show that the larger values of for the staggered arrays are related to the relatively larger drag coefficients of the cubes for that configuration compared with the aligned one. The effective mixing length within and above different cube arrays is also calculated and a local maximum of within the canopy is found in all the cases, with values ranging from to . These patterns of are different from those used in existing urban canopy models.

A model of canopy photosynthesis incorporating protein distribution through the canopy and its acclimation to light, temperature and CO2

PubMed Central

Johnson, Ian R.; Thornley, John H. M.; Frantz, Jonathan M.; Bugbee, Bruce

2010-01-01

Background and Aims The distribution of photosynthetic enzymes, or nitrogen, through the canopy affects canopy photosynthesis, as well as plant quality and nitrogen demand. Most canopy photosynthesis models assume an exponential distribution of nitrogen, or protein, through the canopy, although this is rarely consistent with experimental observation. Previous optimization schemes to derive the nitrogen distribution through the canopy generally focus on the distribution of a fixed amount of total nitrogen, which fails to account for the variation in both the actual quantity of nitrogen in response to environmental conditions and the interaction of photosynthesis and respiration at similar levels of complexity. Model A model of canopy photosynthesis is presented for C3 and C4 canopies that considers a balanced approach between photosynthesis and respiration as well as plant carbon partitioning. Protein distribution is related to irradiance in the canopy by a flexible equation for which the exponential distribution is a special case. The model is designed to be simple to parameterize for crop, pasture and ecosystem studies. The amount and distribution of protein that maximizes canopy net photosynthesis is calculated. Key Results The optimum protein distribution is not exponential, but is quite linear near the top of the canopy, which is consistent with experimental observations. The overall concentration within the canopy is dependent on environmental conditions, including the distribution of direct and diffuse components of irradiance. Conclusions The widely used exponential distribution of nitrogen or protein through the canopy is generally inappropriate. The model derives the optimum distribution with characteristics that are consistent with observation, so overcoming limitations of using the exponential distribution. Although canopies may not always operate at an optimum, optimization analysis provides valuable insight into plant acclimation to environmental conditions. Protein distribution has implications for the prediction of carbon assimilation, plant quality and nitrogen demand. PMID:20861273

Fluid-structure interaction modeling of clusters of spacecraft parachutes with modified geometric porosity

NASA Astrophysics Data System (ADS)

Takizawa, Kenji; Tezduyar, Tayfun E.; Boben, Joseph; Kostov, Nikolay; Boswell, Cody; Buscher, Austin

2013-12-01

To increase aerodynamic performance, the geometric porosity of a ringsail spacecraft parachute canopy is sometimes increased, beyond the "rings" and "sails" with hundreds of "ring gaps" and "sail slits." This creates extra computational challenges for fluid-structure interaction (FSI) modeling of clusters of such parachutes, beyond those created by the lightness of the canopy structure, geometric complexities of hundreds of gaps and slits, and the contact between the parachutes of the cluster. In FSI computation of parachutes with such "modified geometric porosity," the flow through the "windows" created by the removal of the panels and the wider gaps created by the removal of the sails cannot be accurately modeled with the Homogenized Modeling of Geometric Porosity (HMGP), which was introduced to deal with the hundreds of gaps and slits. The flow needs to be actually resolved. All these computational challenges need to be addressed simultaneously in FSI modeling of clusters of spacecraft parachutes with modified geometric porosity. The core numerical technology is the Stabilized Space-Time FSI (SSTFSI) technique, and the contact between the parachutes is handled with the Surface-Edge-Node Contact Tracking (SENCT) technique. In the computations reported here, in addition to the SSTFSI and SENCT techniques and HMGP, we use the special techniques we have developed for removing the numerical spinning component of the parachute motion and for restoring the mesh integrity without a remesh. We present results for 2- and 3-parachute clusters with two different payload models.

Dry deposition profile of small particles within a model spruce canopy.

PubMed

Ould-Dada, Zitouni

2002-03-08

Data on dry deposition of 0.82 microm MMAD uranium particles to a small scale, 'model' Norway spruce (Picea abies) canopy have been determined by means of wind tunnel experiments. These are presented for both the total canopy and for five horizontal layers within the canopy. The results show a complex pattern of deposition within the canopy. The highest deposition velocity Vg (0.19 cm s(-1)) was recorded for the topmost layer within the canopy (i.e. the layer in direct contact with the boundary layer) whereas the lowest Vg (0.02 cm s(-1)) occurred at the soil surface. Vertical penetration of depositing aerosol through the canopy was influenced by variations in biomass, wind velocity and turbulence within the canopy. A total canopy Vg of 0.5 cm s(-1) was obtained and this is in line with field measurements of Vg reported in literature for both anthropogenic and radionuclide aerosols of similar size ranges. Extrapolation of wind tunnel data to 'real' forest canopies is discussed. The information presented here is of importance in predicting the likely contribution of dry deposition of aerosols to pollutant inputs to forest ecosystems, particularly in the context of radioactive aerosol releases from nuclear installations. The application of the present data may also be appropriate for other pollutant aerosols such as SO4, NO3 and NH4, which are characterised by particle sizes in the range used in this study.

Drag and stability characteristics of a variety of reefed and unreefed parachute configurations at Mach 1.80 with an empirical correlation for supersonic Mach numbers

NASA Technical Reports Server (NTRS)

Couch, L. M.

1975-01-01

An investigation was conducted at Mach 1.80 in the Langley 4-foot supersonic pressure tunnel to determine the effects of variation in reefing ratio and geometric porosity on the drag and stability characteristics of four basic canopy types deployed in the wake of a cone-cylinder forebody. The basic designs included cross, hemisflo, disk-gap-band, and extended-skirt canopies; however, modular cross and standard flat canopies and a ballute were also investigated. An empirical correlation was determined which provides a fair estimation of the drag coefficients in transonic and supersonic flow for parachutes of specified geometric porosity and reefing ratio.

Modelling the vertical distribution of canopy fuel load using national forest inventory and low-density airbone laser scanning data

PubMed Central

Castedo-Dorado, Fernando; Hevia, Andrea; Vega, José Antonio; Vega-Nieva, Daniel; Ruiz-González, Ana Daría

2017-01-01

The fuel complex variables canopy bulk density and canopy base height are often used to predict crown fire initiation and spread. Direct measurement of these variables is impractical, and they are usually estimated indirectly by modelling. Recent advances in predicting crown fire behaviour require accurate estimates of the complete vertical distribution of canopy fuels. The objectives of the present study were to model the vertical profile of available canopy fuel in pine stands by using data from the Spanish national forest inventory plus low-density airborne laser scanning (ALS) metrics. In a first step, the vertical distribution of the canopy fuel load was modelled using the Weibull probability density function. In a second step, two different systems of models were fitted to estimate the canopy variables defining the vertical distributions; the first system related these variables to stand variables obtained in a field inventory, and the second system related the canopy variables to airborne laser scanning metrics. The models of each system were fitted simultaneously to compensate the effects of the inherent cross-model correlation between the canopy variables. Heteroscedasticity was also analyzed, but no correction in the fitting process was necessary. The estimated canopy fuel load profiles from field variables explained 84% and 86% of the variation in canopy fuel load for maritime pine and radiata pine respectively; whereas the estimated canopy fuel load profiles from ALS metrics explained 52% and 49% of the variation for the same species. The proposed models can be used to assess the effectiveness of different forest management alternatives for reducing crown fire hazard. PMID:28448524

Canopy rainfall partitioning across an urbanization gradient in forest structure as characterized by terrestrial LiDAR

NASA Astrophysics Data System (ADS)

Mesta, D. C.; Van Stan, J. T., II; Yankine, S. A.; Cote, J. F.; Jarvis, M. T.; Hildebrandt, A.; Friesen, J.; Maldonado, G.

2017-12-01

As urbanization expands, greater forest area is shifting from natural stand structures to urban stand structures, like forest fragments and landscaped tree rows. Changes in forest canopy structure have been found to drastically alter the amount of rainwater reaching the surface. However, stormwater management models generally treat all forest structures (beyond needle versus broadleaved) similarly. This study examines the rainfall partitioning of Pinus spp. canopies along a natural-to-urban forest gradient and compares these to canopy structural measurements using terrestrial LiDAR. Throughfall and meteorological observations were also used to estimate parameters of the commonly-used Gash interception model. Preliminary findings indicate that as forest structure changed from natural, closed canopy conditions to semi-closed canopy fragments and, ultimately, to exposed urban landscaping tree rows, the interchange between throughfall and rainfall interception also changed. This shift in partitioning between throughfall and rainfall interception may be linked to intuitive parameters, like canopy closure and density, as well as more complex metrics, like the fine-scale patterning of gaps (ie, lacunarity). Thus, results indicate that not all forests of the same species should be treated the same by stormwater models. Rather, their canopy structural characteristics should be used to vary their hydrometeorological interactions.

The role of stable isotopes in understanding rainfall ...

EPA Pesticide Factsheets

The isotopic composition of water transmitted by the canopy as throughfall or stemflow reflects important hydrologic processes occurring in the canopy. A synthesis of the literature shows that complex spatiotemporal variations of isotopic composition are created by canopy interception. As a whole, the studies suggest a set of controlling factors including fractionation, exchange among liquid and vapor phase water, and spatiotemporal redistribution along varying canopy flowpaths. However, our limited understanding of physical processes and water routing in the canopy limits the ability to discern all details for predicting interception isotope effects. We suggest that the isotopic composition of throughfall and stemflow may be the key to improve our understanding of water storage and transport in the canopy, similar to how isotopic analysis contributed to progress in our understanding of watershed runoff processes. While interception isotope effects have largely been studied under the premise that they are a source of error, previous works also indicate a wide range of possible interactions that intercepted water may have with the canopy and airspace. We identify new research questions that may be answered by stable isotopes as a path forward in examining and generalizing small-scale interception processes that could facilitate integration of interception into watershed ecohydrological concepts. Evaporation from forest canopies (interception loss) is a prominent

Turbulence and Air Exchange in a Two-Dimensional Urban Street Canyon Between Gable Roof Buildings

NASA Astrophysics Data System (ADS)

Garau, Michela; Badas, Maria Grazia; Ferrari, Simone; Seoni, Alessandro; Querzoli, Giorgio

2018-04-01

We experimentally investigate the effect of a typical building covering: the gable roof, on the flow and air exchange in urban canyons. In general, the morphology of the urban canopy is very varied and complex, depending on a large number of factors, such as building arrangement, or the morphology of the terrain. Therefore we focus on a simple, prototypal shape, the two-dimensional canyon, with the aim of elucidating some fundamental phenomena driving the street-canyon ventilation. Experiments are performed in a water channel, over an array of identical prismatic obstacles representing an idealized urban canopy. The aspect ratio, i.e. canyon-width to building-height ratio, ranges from 1 to 6. Gable roof buildings with 1:1 pitch are compared with flat roofed buildings. Velocity is measured using a particle-image-velocimetry technique with flow dynamics discussed in terms of mean flow and second- and third-order statistical moments of the velocity. The ventilation is interpreted by means of a simple well-mixed box model and the outflow rate and mean residence time are computed. Results show that gable roofs tend to delay the transition from the skimming-flow to the wake-interference regime and promote the development of a deeper and more turbulent roughness layer. The presence of a gable roof significantly increases the momentum flux, especially for high packing density. The air exchange is improved compared to the flat roof buildings, and the beneficial effect is more significant for narrow canyons. Accordingly, for unit aspect ratio gable roofs reduce the mean residence time by a factor of 0.37 compared to flat roofs, whereas the decrease is only by a factor of 0.9 at the largest aspect ratio. Data analysis indicates that, for flat roof buildings, the mean residence time increases by 30% when the aspect ratio is decreased from 6 to 2, whereas this parameter is only weakly dependent on aspect ratio in the case of gable roofs.

Directional radiative transfer by SCOPE, SLC and DART using laser scan derived structural forest parameters

NASA Astrophysics Data System (ADS)

Timmermans, Joris; Gastellu-Etchegorry, Jean Philippe; van der Tol, Christiaan; Verhoef, Wout; Vekerdy, Zoltan; Su, Zhongbo

2017-04-01

Accurate estimation of the radiative transfer (RT) over vegetation is the corner stone of agricultural and hydrological remote sensing applications. Present remote sensing sensors mostly use traditional optical, thermal and microwave observations. However with these traditional observations characterization of the light efficiency and photosynthetic rate can only be accomplished indirectly. A promising new method of observing these processes is by using the fluorescent emitted radiation. This approach was recently highlighted due to the selection of the FLEX sensor as a future Earth Explorer by the European Space agency (ESA). Several modelling activities have been undertaken to better understand the technical feasibilities of this sensor. Within these studies, the SCOPE model has been chosen as the baseline algorithm. This model combines a detailed RT description of the canopy, using a discrete version of the SAIL model, with a description of photosynthetic processes (by use of the Farquhar/Ball-Berry model). Consequently, this model is capable of simulating simultaneously the biophysical processes and jointly the fluorescent, optical and thermal RT. The SAIL model however is a 1D RT model and consequently provides higher uncertainties with increasing vegetation structures. The main objective of this research is to investigate the limitations of the RT model component of the SCOPE model over complex canopies. In particular the aim of this research is to evaluate the validity for increasingly structural complex canopies', on the bidirectional reflectance distribution functions (BRDF) of these canopies. This was accomplished by evaluating the simulated outgoing radiation from SCOPE/SAIL against simulations of the DART 3D RT model. In total nine different scenarios were simulated with the DART RTM with increasing structural complexity, ranging from the simple 'Plot' scenario to the highly complex 'Multiple Crown' scenario. The canopy parameters are retrieved from a terrestrial laser scan of the Speulderbos in the Netherlands. The comparison between DART and SCOPE/SLC models showed a good match for the simple scenarios. Calculated rMSDs showed lower than 7.5% errors for crown coverage values lower than 0.87, with the Near-Hotspot viewing angles found to be the largest contributor to this deviation. For more complex scenarios (using Multiple Crowns), the comparison between SCOPE and DART showed mixed results. Good results were obtained for crown coverage values of 0.93, with rMSD (6.77% and 5.96%), lower than the defined threshold value, except near hotspot. For scenarios with crown coverages lower than 0.93 the rMSD were too large to validate the use of SCOPE model. When considering the Soil Leaf Canopy (SLC) model, an improved version of SAIL that considers the canopy clumping, better results were obtained for these complex scenarios, with good agreement for medium crown coverage values (0.93 and 0.87) with rMSD (6.33% and 5.99; 6.66% and 7.12%). This indicates that the radiative transfer model within SCOPE might be upgraded in the future.

Consumer depletion alters seagrass resistance to an invasive macroalga.

PubMed

Caronni, Sarah; Calabretti, Chiara; Delaria, Maria Anna; Bernardi, Giuseppe; Navone, Augusto; Occhipinti-Ambrogi, Anna; Panzalis, Pieraugusto; Ceccherelli, Giulia

2015-01-01

Few field studies have investigated how changes at one trophic level can affect the invasibility of other trophic levels. We examined the hypothesis that the spread of an introduced alga in disturbed seagrass beds with degraded canopies depends on the depletion of large consumers. We mimicked the degradation of seagrass canopies by clipping shoot density and reducing leaf length, simulating natural and anthropogenic stressors such as fish overgrazing and water quality. Caulerpa racemosa was transplanted into each plot and large consumers were excluded from half of them using cages. Potential cage artifacts were assessed by measuring irradiance, scouring by leaf movement, water flow, and sedimentation. Algal invasion of the seagrass bed differed based on the size of consumers. The alga had higher cover and size under the cages, where the seagrass was characterized by reduced shoot density and canopy height. Furthermore, canopy height had a significant effect depending on canopy density. The alteration of seagrass canopies increased the spread of C. racemosa only when large consumers were absent. Our results suggest that protecting declining habitats and/or restoring fish populations will limit the expansion of C. racemosa. Because MPAs also enhance the abundance and size of fish consuming seagrass they can indirectly promote algal invasion. The effects of MPAs on invasive species are context dependent and require balancing opposing forces, such as the conservation of seagrass canopy structure and the protection of fish grazing the seagrass.

PIV Measurements of Atmospheric Turbulence and Pollen Dispersal Above a Corn Canopy

NASA Astrophysics Data System (ADS)

Zhu, W.; van Hout, R.; Luznik, L.; Katz, J.

2003-12-01

Dispersal of pollen grains by wind and gravity (Anemophilous) is one of the oldest means of plant fertilization available in nature. Recently, the growth of genetically modified foods has raised questions on the range of pollen dispersal in order to limit cross-fertilization between organically grown and transgenic crops. The distance that a pollen grain can travel once released from the anther is determined, among others, by the aerodynamic parameters of the pollen and the characteristics of turbulence in the atmosphere in which it is released. Turbulence characteristics of the flow above a pollinating corn field were measured using Particle Image Velocimetry (PIV). The measurements were performed on the eastern shore of the Chesapeake Bay, in Maryland, during July 2003. Two PIV systems were used simultaneously, each with an overall sample area of 18x18 cm. The spacing between samples was about equal to the field of view. The PIV instrumentation, including CCD cameras, power supply and laser sheets forming optics were mounted on a measurement platform, consisting of a hydraulic telescopic arm that could be extended up to 10m. The whole system could be rotated in order to align it with the flow. The flow was seeded with smoke generated about 30m upstream of the sample areas. Measurements were carried out at several elevations, from just below canopy height up to 1m above canopy. The local meteorological conditions around the test site were monitored by other sensors including sonic anemometers, Rotorod pollen counters and temperature sensors. Each processed PIV image provides an instantaneous velocity distribution containing 64x64 vectors with a vector spacing of ~3mm. The pollen grains (~100mm) can be clearly distinguished from the smoke particles (~1mm) based on their size difference. The acquired PIV data enables calculation of the mean flow and turbulence characteristics including Reynolds stresses, spectra, turbulent kinetic energy and dissipation rate. Data analysis is currently in progress and results, focusing on the flow very near to the canopy will be presented. This research is funded by the National Science Foundation (NSF).

[Mechanisms of grass in slope erosion control in Loess sandy soil region of Northwest China].

PubMed

Zhao, Chun-Hong; Gao, Jian-En; Xu, Zhen

2013-01-01

By adopting the method of simulated precipitation and from the viewpoint of slope hydrodynamics, in combining with the analysis of soil resistance to erosion, a quantitative study was made on the mechanisms of grass in controlling the slope erosion in the cross area of wind-water erosion in Loess Plateau of Northwest China under different combinations of rainfall intensity and slope gradient, aimed to provide basis to reveal the mechanisms of vegetation in controlling soil erosion and to select appropriate vegetation for the soil and water conservation in Loess Plateau. The grass Astragalus adsurgens with the coverage about 40% could effectively control the slope erosion. This grass had an efficiency of more than 70% in reducing sediment, and the grass root had a greater effect than grass canopy. On bare slope and on the slopes with the grass plant or only the grass root playing effect, there existed a functional relation between the flow velocity on the slopes and the rainfall intensity and slope gradient (V = DJ(0.33 i 0.5), where V is flow velocity, D is the comprehensive coefficient which varies with different underlying surfaces, i is rainfall intensity, and J is slope gradient). Both the grass root and the grass canopy could markedly decrease the flow velocity on the slopes, and increase the slope resistance, but the effect of grass root in decreasing flow velocity was greater while the effect in increasing resistance was smaller than that of grass canopy. The effect of grass root in increasing slope resistance was mainly achieved by increasing the sediment grain resistance, while the effect of canopy was mainly achieved by increasing the slope form resistance and wave resistance. The evaluation of the soil resistance to erosion by using a conceptual model of sediment generation by overland flow indicated that the critical shear stress value of bare slope and of the slopes with the grass plant or only the grass root playing effect was 0.533, 1.672 and 0.925 Pa, respectively.

Relationships between fire frequency and woody canopy cover in a semi-arid African savanna

Treesearch

Andrew T. Hudak; Bruce H. Brockett

2003-01-01

Landscape-scale fire patterns result from complex interactions among weather, ignition sources, vegetation type and the biophysical environment (Hargrove et al. 2000, Morgan et al. 2001, Keane et al. 2002, Hudak, Fairbanks & Brockett in press). Patch characteristics (e.g. woody canopy cover) influence fire characteristics, which in turn influence patch...

Connections between transport in events and transport at landscape-structuring timescales

NASA Astrophysics Data System (ADS)

Harman, C. J.; Lohse, K. A.; Troch, P. A.; Sivapalan, M.

2012-12-01

Complex spatial and temporal variability can arise in the critical zone when feedbacks occur at multiple time scales between transported materials and the landscape and soils through which it is transported. This is clearly illustrated where geomorphic transport processes, soil development, and vegetation interact in semi-arid shrublands. Here we use soil and terrain data and a numerical model of overland flow on semi-arid hillslopes to show that microtopography can generate spatial variations in the dominance of transport processes operating at different timescales, with consequences for the direction of resource redistribution between functional units within these ecosystems. Conceptual and numerical models of the redistribution of mineral, organic and water have mostly been developed on low-gradient alluvial fans and pediments. These have focused on the fluvial transport of resources from the inter-spaces between shrub canopies to the areas below the canopy in those few storm events that generate significant run-off. These processes are believed to produce a mosaic of resource islands in which biota are concentrated. We investigated the spatial distribution of soil properties (including organic matter and soil hydraulic properties), vegetation, and microtopography on two steeper hillslopes of contrasting lithology (one granite, one schist) in the Sonoran desert foothills of the Catalina Mountains. Three hypotheses were developed through iteration between fieldwork and data analysis. These tested whether there were significant differences in soil composition and hydraulic properties below- and between-canopy, whether the surface soil organic matter was directly associated with above-ground biomass, and whether soil organic matter distributions measured along transects below shrubs showed downslope asymmetries indicative of the processes that create them. Data from these sites were used in a numerical model to investigate how these structures could be related to the population of runoff events and processes that generate them. The results suggest that over the long term, slope-dependent transport processes (such as rainsplash, bioturbation and trampling) seem to play an important role in these steeper hillslopes in inverting the flow of resources. Over many storm and inter-storm periods, soil organic matter is transported downslope in plumes extending at least two canopy radii downslope from below woody-shrub canopies into the inter-space. This pattern was particularly evident where microtopography and soil properties create micro-sites protected from fluvial transport. While many of the patterns observed are similar to those from more stable geomorphic surfaces, the results suggest that long-term downslope transport processes in sloping terrain can disrupt the autogenic processes that reinforce the redistribution of resources under shrubs. This result has important implications for our understanding of the relationship between ecosystem function and landscape-scale transport in these environments.

Low-frequency coherent motions within the spruce canopy on the upwind vs. downwind side of a forested ridge

NASA Astrophysics Data System (ADS)

Potužníková, K.; Sedlák, P.; Šauli, P.

2009-09-01

Airflow and turbulence within and above the forest canopy determine the forest - atmosphere exchange of atmospheric constituents and pollutants. Our investigation is related to the existence of large-scale intermittent coherent structures, which have been detected in turbulence time series measured at the Experimental Ecological Study Site Bílý Kříž (800-900 m a.s.l.) in the Czech Republic. The site is situated on a steep (13°) SSW-faced slope near the top of a mountain ridge forested by a young Norway spruce plantation. Flow directions across the ridge (along the slope) strongly prevail at the site. Results based on a recent study reveal significant differences between the cases when the site is on the upwind vs. downwind side of the ridge. Typical downwind cases are characterized by a low wind speed above the canopy and by relatively higher friction velocity than in the upwind cases. This is explained by the flow retardation by the upslope-directed hydrodynamic pressure gradient and by the large wind shear in the upper part of the wake behind the ridge top. This contribution concentrates on the vertical coherency of the turbulent flow within the forest canopy. Analysed variables include the high-frequency wind velocity components and sonic temperature measured during periods of neutral thermal stratification at two different levels. Wavelet analysis was used for detection of characteristic temporal scale of coherent structures, their persistence and effectivity parameter. Special attention is paid to the differences between the upwind and downwind cases. Acknowledgements: The study is supported by the grant IAA300420803 and IAA300420704 from Grant Agency of Academy of Sciences of the Czech Republic.

Modeling runoff generation in a small snow-dominated mountainous catchment

USDA-ARS?s Scientific Manuscript database

Snowmelt in mountainous areas is an important contributor to river water flows in the western United States. We developed a distributed model that calculates solar radiation, canopy energy balance, surface energy balance, snow pack dynamics, soil water flow, snow–soil–bedrock heat exchange, soil wat...

Bacterial burden in the operating room: impact of airflow systems.

PubMed

Hirsch, Tobias; Hubert, Helmine; Fischer, Sebastian; Lahmer, Armin; Lehnhardt, Marcus; Steinau, Hans-Ulrich; Steinstraesser, Lars; Seipp, Hans-Martin

2012-09-01

Wound infections present one of the most prevalent and frequent complications associated with surgical procedures. This study analyzes the impact of currently used ventilation systems in the operating room to reduce bacterial contamination during surgical procedures. Four ventilation systems (window-based ventilation, supported air nozzle canopy, low-turbulence displacement airflow, and low-turbulence displacement airflow with flow stabilizer) were analyzed. Two hundred seventy-seven surgical procedures in 6 operating rooms of 5 different hospitals were analyzed for this study. Window-based ventilation showed the highest intraoperative contamination (13.3 colony-forming units [CFU]/h) followed by supported air nozzle canopy (6.4 CFU/h; P = .001 vs window-based ventilation) and low-turbulence displacement airflow (3.4 and 0.8 CFU/h; P < .001 vs window-based ventilation and supported air nozzle canopy). The highest protection was provided by the low-turbulence displacement airflow with flow stabilizer (0.7 CFU/h), which showed a highly significant difference compared with the best supported air nozzle canopy theatre (3.9 CFU/h; P < .001). Furthermore, this system showed no increase of contamination in prolonged durations of surgical procedures. This study shows that intraoperative contamination can be significantly reduced by the use of adequate ventilation systems. Copyright © 2012 Association for Professionals in Infection Control and Epidemiology, Inc. Published by Mosby, Inc. All rights reserved.

Temporal Variability of Stemflow Dissolved Organic Carbon (DOC) Concentrations and Quality from Morphologically Contrasting Deciduous Canopies

NASA Astrophysics Data System (ADS)

van Stan, J. T.; Levia, D. F.; Inamdar, S. P.; Mitchell, M. J.; Mage, S. M.

2010-12-01

Dissolved organic carbon (DOC) inputs from canopy-derived hydrologic fluxes play a significant role in the terrestrial carbon budgets of forested ecosystems. However, no studies known to the authors have examined the variability of both DOC concentrations and quality for stemflow across time scales, nor has any study to date evaluated the effects of canopy structure on stemflow DOC characteristics. This investigation seeks to rectify this knowledge gap by examining the variability of stemflow DOC concentrations and quality across contrasting canopy morphologies and time scales (seasonal, storm and intrastorm). Bulk and intrastorm stemflow samples from a less dense, rough-barked, more plagiophile (Liriodendron tulipifera L. (tulip poplar)) and a denser, thin-barked, more erectophile (Fagus grandifolia Ehrh. (American beech)) canopy were collected and analyzed for DOC quality using metrics derived from UV-vis spectroscopy (E2:E3 ratio, SUVA254, select spectral slope (S), and spectral slope ratios (SR)). Our results suggest that stemflow DOC concentrations and quality change as crown architectural traits enhance or diminish hydrologic retention time within the canopy. The architecture of L. tulipifera canopies likely retards the flow of intercepted water, increasing chemical exchange with bark and foliar surfaces. UV-vis metrics indicated that this increased chemical exchange, particularly with bark surfaces, generally enhanced aromatic hydrocarbon content and increased molecular weight. Because leaf presence influenced DOC quality, stemflow DOC characteristics also varied seasonally in response to canopy condition. At the inter- and intrastorm scale, stemflow DOC concentration and quality varied with meteorological and antecedent canopy conditions. Since recent studies have linked stemflow production to preferential subsurface transport of dissolved chemistries, trends in DOC speciation and fluxes described in this study may impact soil environments within wooded ecosystems.

Estimating the Instantaneous Drag-Wind Relationship for a Horizontally Homogeneous Canopy

NASA Astrophysics Data System (ADS)

Pan, Ying; Chamecki, Marcelo; Nepf, Heidi M.

2016-07-01

The mean drag-wind relationship is usually investigated assuming that field data are representative of spatially-averaged metrics of statistically stationary flow within and above a horizontally homogeneous canopy. Even if these conditions are satisfied, large-eddy simulation (LES) data suggest two major issues in the analysis of observational data. Firstly, the streamwise mean pressure gradient is usually neglected in the analysis of data from terrestrial canopies, which compromises the estimates of mean canopy drag and provides misleading information for the dependence of local mean drag coefficients on local velocity scales. Secondly, no standard approach has been proposed to investigate the instantaneous drag-wind relationship, a critical component of canopy representation in LES. Here, a practical approach is proposed to fit the streamwise mean pressure gradient using observed profiles of the mean vertical momentum flux within the canopy. Inclusion of the fitted mean pressure gradient enables reliable estimates of the mean drag-wind relationship. LES data show that a local mean drag coefficient that characterizes the relationship between mean canopy drag and the velocity scale associated with total kinetic energy can be used to identify the dependence of the local instantaneous drag coefficient on instantaneous velocity. Iterative approaches are proposed to fit specific models of velocity-dependent instantaneous drag coefficients that represent the effects of viscous drag and the reconfiguration of flexible canopy elements. LES data are used to verify the assumptions and algorithms employed by these new approaches. The relationship between mean canopy drag and mean velocity, which is needed in models based on the Reynolds-averaged Navier-Stokes equations, is parametrized to account for both the dependence on velocity and the contribution from velocity variances. Finally, velocity-dependent drag coefficients lead to significant variations of the calculated displacement height and roughness length with wind speed.

A Canopy Density Model for Planar Orchard Target Detection Based on Ultrasonic Sensors

PubMed Central

Li, Hanzhe; Zhai, Changyuan; Weckler, Paul; Wang, Ning; Yang, Shuo; Zhang, Bo

2016-01-01

Orchard target-oriented variable rate spraying is an effective method to reduce pesticide drift and excessive residues. To accomplish this task, the orchard targets’ characteristic information is needed to control liquid flow rate and airflow rate. One of the most important characteristics is the canopy density. In order to establish the canopy density model for a planar orchard target which is indispensable for canopy density calculation, a target density detection testing system was developed based on an ultrasonic sensor. A time-domain energy analysis method was employed to analyze the ultrasonic signal. Orthogonal regression central composite experiments were designed and conducted using man-made canopies of known density with three or four layers of leaves. Two model equations were obtained, of which the model for the canopies with four layers was found to be the most reliable. A verification test was conducted with different layers at the same density values and detecting distances. The test results showed that the relative errors of model density values and actual values of five, four, three and two layers of leaves were acceptable, while the maximum relative errors were 17.68%, 25.64%, 21.33% and 29.92%, respectively. It also suggested the model equation with four layers had a good applicability with different layers which increased with adjacent layers. PMID:28029132

Spray outputs from a variable-rate sprayer manipulated with PWM solenoid valves

USDA-ARS?s Scientific Manuscript database

Pressure fluctuations during variable-rate spray applications can affect nozzle flow rate fluctuations, resulting in spray outputs that do not coincide with the prescribed canopy structure volume. Variations in total flow rate discharged from 40 nozzles, each coupled with a pulse-width-modulated (PW...

Aerodynamic Characterization of New Parachute Configurations for Low-Density Deceleration

NASA Technical Reports Server (NTRS)

Tanner, Christopher L.; Clark, Ian G.; Gallon, John C.; Rivellini, Tommaso P.; Witkowski, Allen

2013-01-01

The Low Density Supersonic Decelerator project performed a wind tunnel experiment on the structural design and geometric porosity of various sub-scale parachutes in order to inform the design of the 110ft nominal diameter flight test canopy. Thirteen different parachute configurations, including disk-gap-band, ring sail, disk sail, and star sail canopies, were tested at the National Full-scale Aerodynamics Complex 80- by 120-foot Wind Tunnel at NASA Ames Research Center. Canopy drag load, dynamic pressure, and canopy position data were recorded in order to quantify there lative drag performance and stability of the various canopies. Desirable designs would yield increased drag above the disk-gap-band with similar, or improved, stability characteristics. Ring sail parachutes were tested at geometric porosities ranging from 10% to 22% with most of the porosity taken from the shoulder region near the canopy skirt. The disk sail canopy replaced the rings lot portion of the ring sail canopy with a flat circular disk and wastested at geometric porosities ranging from 9% to 19%. The star sail canopy replaced several ringsail gores with solid gores and was tested at 13% geometric porosity. Two disk sail configurations exhibited desirable properties such as an increase of 6-14% in the tangential force coefficient above the DGB with essentially equivalent stability. However, these data are presented with caveats including the inherent differences between wind tunnel and flight behavior and qualitative uncertainty in the aerodynamic coefficients.

Bidirectional Reflectance Modeling of Non-homogeneous Plant Canopies

NASA Technical Reports Server (NTRS)

Norman, J. M.

1984-01-01

Efforts to develop a three dimensional model to predict canopy, bidirectional reflectance for heterogenous plant stands using incident radiation and canopy structural descriptions as inputs are described. Utility programs were developed to cope with the complex output from the 3 dimensional model. In addition an attempt was made to define leaf and soil properties, which are appropriate to the mode, by measuring leaf and soil bidirectional reflectance distribution functions; since almost no data exist on these distributions. In the process it was realized that most models probably are using the wrong leaf spectral properties, and that off-nadir reflectance measurements are difficult to make because of non-Lambertian properties of reference surfaces. Also, in the visible wavebands, rough soil may not be distinguishable from canopies when viewed from above.

Co-evolution of Vegetation, Sediment Transport and Infiltration on semi-arid hillslopes

NASA Astrophysics Data System (ADS)

Harman, C. J.; Troch, P. A.; Lohse, K. A.; Sivapalan, M.

2011-12-01

Soils in semi-arid landscapes can vary over very small distances, with a great deal of variation associated with 'resource islands' created and maintained by woody vegetation. The distinct physical and hydraulic properties that arise in these islands can lead to spatial patterns of infiltration that have been implicated in the maintenance of the vegetation populating the island. Less well understood are the roles that the small-scale variability in soils plays in determining the transport of sediments, water and sediment-bound carbon and nitrogen across hillslopes. Here we explore these relationships using a coupled field and modeling approach. Detailed field data from hillslopes underlain by both granite and schist parent materials in the Santa Catalina mountains (part of the JSC Critical Zone Observatory) suggest that soils under individual velvet mesquite (latin name) contain higher concentration of soil organic matter and have higher hydraulic conductivity and water holding capacity. Greater infiltration and increased roughness under the canopy appears to lead to the formation of mounds that alter overland flow lines around the area under the canopy, particularly in the finer schist soils. This diversion leads to a complex distribution of shear stresses across the hillslope, creating systematic patterns in the transport of carbon and nitrogen rich soils under the canopies. The relationship between the small scale mechanism and the emergent pattern dynamics in the temporal variability of materials delivered to the stream from the hillslope are also examined, and the implications of these results for the modeling of water, sediment and nutrient fluxes at hillslope scales will be discussed.

Regional variation in canopy transpiration of Central European beech forests.

PubMed

Schipka, Florian; Heimann, Jutta; Leuschner, Christoph

2005-03-01

Forest hydrologists have hypothesised that canopy transpiration (E(c)) of European temperate forests occurs at rather similar rates in stands with different tree species and hydrologic regimes. We tested this hypothesis by synchronously measuring xylem sap flow in four mature stands of Fagus sylvatica along a precipitation gradient with the aim (1) of exploring the regional variability of annual canopy transpiration (E(c(t))) in this species, and (2) of analysing the relationship between precipitation (P) and E(c(t)). E(c(t)) rates of 216, 225, 272 and 303 mm year(-1) corresponded to precipitation averages of 520, 710, 801 and 1,040 mm year(-1) in the four stands. We explored the regional variability of E(c(t)) in Central European colline to sub-montane beech stands in two meta-analyses based on (1) existing sap flow data on beech (n=5 observations), or (2) all canopy transpiration data on beech obtained by different techniques (sap flow, micrometeorological or soil water budget approaches, n=25). With a coefficient of variation (CV) of 20%, the regional variability of E(c(t)) (213-421 mm year(-1)) was smaller than the variation in corresponding precipitation (550-1,480 mm year(-1)). The mean E(c(t)) for beech was 289 (+/-58) mm year(-1) (n=25). A humped-shaped relationship between E(c(t)) and P, with a broad transpiration maximum in the precipitation range from ca. 700 to 1,000 mm year(-1), was found which may indicate soil moisture limitation of transpiration for P 1,000 mm year(-1). Thus, the precipitation level significantly influences canopy transpiration of humid temperate forests; however, the size of the P influence on E(c(t)) and, in part, the direction of its effect differ from forests in semi-arid or arid climates. European beech has the capacity to maintain high E(c) rates in both humid and partly dry summer climates (P<550 mm year(-1)).

Turbulent Structures in a Pine Forest with a Deep and Sparse Trunk Space: Stand and Edge Regions

NASA Astrophysics Data System (ADS)

Dupont, Sylvain; Irvine, Mark R.; Bonnefond, Jean-Marc; Lamaud, Eric; Brunet, Yves

2012-05-01

Forested landscapes often exhibit large spatial variability in vertical and horizontal foliage distributions. This variability may affect canopy-atmosphere exchanges through its action on the development of turbulent structures. Here we investigate in neutral stratification the turbulent structures encountered in a maritime pine forest characterized by a high, dense foliated layer associated with a deep and sparse trunk space. Both stand and edge regions are considered. In situ measurements and the results of large-eddy simulations are used and analyzed together. In stand conditions, far from the edge, canopy-top structures appear strongly damped by the dense crown layer. Turbulent wind fluctuations within the trunk space, where the momentum flux vanishes, are closely related to these canopy-top structures through pressure diffusion. Consequently, autocorrelation and spectral analyses are not quite appropriate to characterize the vertical scale of coherent structures in this type of canopy, as pressure diffusion enhances the actual scale of structures. At frequencies higher than those associated with canopy-top structures, wind fluctuations related to wake structures developing behind tree stems are observed within the trunk space. They manifest themselves in wind velocity spectra as secondary peaks in the inertial subrange region, confirming the hypothesis of spectral short-cuts in vegetation canopies. In the edge region specific turbulent structures develop just below the crown layer, in addition to canopy-top structures. They are generated by the wind shear induced by the sub-canopy wind jet that forms at the edge. These structures provide a momentum exchange mechanism similar to that observed at the canopy top but in the opposite direction and with a lower magnitude. They may develop as in plane mixing-layer flows, with some perturbations induced by canopy-top structures. Wake structures are also observed within the trunk space in the edge region.

Design and performance of combined infrared canopy and belowground warming in the B4WarmED (Boreal Forest Warming at an Ecotone in Danger) experiment.

PubMed

Rich, Roy L; Stefanski, Artur; Montgomery, Rebecca A; Hobbie, Sarah E; Kimball, Bruce A; Reich, Peter B

2015-06-01

Conducting manipulative climate change experiments in complex vegetation is challenging, given considerable temporal and spatial heterogeneity. One specific challenge involves warming of both plants and soils to depth. We describe the design and performance of an open-air warming experiment called Boreal Forest Warming at an Ecotone in Danger (B4WarmED) that addresses the potential for projected climate warming to alter tree function, species composition, and ecosystem processes at the boreal-temperate ecotone. The experiment includes two forested sites in northern Minnesota, USA, with plots in both open (recently clear-cut) and closed canopy habitats, where seedlings of 11 tree species were planted into native ground vegetation. Treatments include three target levels of plant canopy and soil warming (ambient, +1.7°C, +3.4°C). Warming was achieved by independent feedback control of voltage input to aboveground infrared heaters and belowground buried resistance heating cables in each of 72-7.0 m(2) plots. The treatments emulated patterns of observed diurnal, seasonal, and annual temperatures but with superimposed warming. For the 2009 to 2011 field seasons, we achieved temperature elevations near our targets with growing season overall mean differences (∆Tbelow ) of +1.84°C and +3.66°C at 10 cm soil depth and (∆T(above) ) of +1.82°C and +3.45°C for the plant canopies. We also achieved measured soil warming to at least 1 m depth. Aboveground treatment stability and control were better during nighttime than daytime and in closed vs. open canopy sites in part due to calmer conditions. Heating efficacy in open canopy areas was reduced with increasing canopy complexity and size. Results of this study suggest the warming approach is scalable: it should work well in small-statured vegetation such as grasslands, desert, agricultural crops, and tree saplings (<5 m tall). © 2015 John Wiley & Sons Ltd.

Local selection modifies phenotypic divergence among Rana temporaria populations in the presence of gene flow.

PubMed

Richter-Boix, Alex; Teplitsky, Céline; Rogell, Björn; Laurila, Anssi

2010-02-01

In ectotherms, variation in life history traits among populations is common and suggests local adaptation. However, geographic variation itself is not a proof for local adaptation, as genetic drift and gene flow may also shape patterns of quantitative variation. We studied local and regional variation in means and phenotypic plasticity of larval life history traits in the common frog Rana temporaria using six populations from central Sweden, breeding in either open-canopy or partially closed-canopy ponds. To separate local adaptation from genetic drift, we compared differentiation in quantitative genetic traits (Q(ST)) obtained from a common garden experiment with differentiation in presumably neutral microsatellite markers (F(ST)). We found that R. temporaria populations differ in means and plasticities of life history traits in different temperatures at local, and in F(ST) at regional scale. Comparisons of differentiation in quantitative traits and in molecular markers suggested that natural selection was responsible for the divergence in growth and development rates as well as in temperature-induced plasticity, indicating local adaptation. However, at low temperature, the role of genetic drift could not be separated from selection. Phenotypes were correlated with forest canopy closure, but not with geographical or genetic distance. These results indicate that local adaptation can evolve in the presence of ongoing gene flow among the populations, and that natural selection is strong in this system.

Sexual dimorphism in bite performance drives morphological variation in chameleons.

PubMed

da Silva, Jessica M; Herrel, Anthony; Measey, G John; Tolley, Krystal A

2014-01-01

Phenotypic performance in different environments is central to understanding the evolutionary and ecological processes that drive adaptive divergence and, ultimately, speciation. Because habitat structure can affect an animal's foraging behaviour, anti-predator defences, and communication behaviour, it can influence both natural and sexual selection pressures. These selective pressures, in turn, act upon morphological traits to maximize an animal's performance. For performance traits involved in both social and ecological activities, such as bite force, natural and sexual selection often interact in complex ways, providing an opportunity to understand the adaptive significance of morphological variation with respect to habitat. Dwarf chameleons within the Bradypodion melanocephalum-Bradypodion thamnobates species complex have multiple phenotypic forms, each with a specific head morphology that could reflect its use of either open- or closed-canopy habitats. To determine whether these morphological differences represent adaptations to their habitats, we tested for differences in both absolute and relative bite performance. Only absolute differences were found between forms, with the closed-canopy forms biting harder than their open-canopy counterparts. In contrast, sexual dimorphism was found for both absolute and relative bite force, but the relative differences were limited to the closed-canopy forms. These results indicate that both natural and sexual selection are acting within both habitat types, but to varying degrees. Sexual selection seems to be the predominant force within the closed-canopy habitats, which are more protected from aerial predators, enabling chameleons to invest more in ornamentation for communication. In contrast, natural selection is likely to be the predominant force in the open-canopy habitats, inhibiting the development of conspicuous secondary sexual characteristics and, ultimately, enforcing their overall diminutive body size and constraining performance.

Sexual Dimorphism in Bite Performance Drives Morphological Variation in Chameleons

PubMed Central

da Silva, Jessica M.; Herrel, Anthony; Measey, G. John; Tolley, Krystal A.

2014-01-01

Phenotypic performance in different environments is central to understanding the evolutionary and ecological processes that drive adaptive divergence and, ultimately, speciation. Because habitat structure can affect an animal’s foraging behaviour, anti-predator defences, and communication behaviour, it can influence both natural and sexual selection pressures. These selective pressures, in turn, act upon morphological traits to maximize an animal’s performance. For performance traits involved in both social and ecological activities, such as bite force, natural and sexual selection often interact in complex ways, providing an opportunity to understand the adaptive significance of morphological variation with respect to habitat. Dwarf chameleons within the Bradypodion melanocephalum-Bradypodion thamnobates species complex have multiple phenotypic forms, each with a specific head morphology that could reflect its use of either open- or closed-canopy habitats. To determine whether these morphological differences represent adaptations to their habitats, we tested for differences in both absolute and relative bite performance. Only absolute differences were found between forms, with the closed-canopy forms biting harder than their open-canopy counterparts. In contrast, sexual dimorphism was found for both absolute and relative bite force, but the relative differences were limited to the closed-canopy forms. These results indicate that both natural and sexual selection are acting within both habitat types, but to varying degrees. Sexual selection seems to be the predominant force within the closed-canopy habitats, which are more protected from aerial predators, enabling chameleons to invest more in ornamentation for communication. In contrast, natural selection is likely to be the predominant force in the open-canopy habitats, inhibiting the development of conspicuous secondary sexual characteristics and, ultimately, enforcing their overall diminutive body size and constraining performance. PMID:24475183

Automatic Detection of Regions in Spinach Canopies Responding to Soil Moisture Deficit Using Combined Visible and Thermal Imagery

PubMed Central

Raza, Shan-e-Ahmed; Smith, Hazel K.; Clarkson, Graham J. J.; Taylor, Gail; Thompson, Andrew J.; Clarkson, John; Rajpoot, Nasir M.

2014-01-01

Thermal imaging has been used in the past for remote detection of regions of canopy showing symptoms of stress, including water deficit stress. Stress indices derived from thermal images have been used as an indicator of canopy water status, but these depend on the choice of reference surfaces and environmental conditions and can be confounded by variations in complex canopy structure. Therefore, in this work, instead of using stress indices, information from thermal and visible light imagery was combined along with machine learning techniques to identify regions of canopy showing a response to soil water deficit. Thermal and visible light images of a spinach canopy with different levels of soil moisture were captured. Statistical measurements from these images were extracted and used to classify between canopies growing in well-watered soil or under soil moisture deficit using Support Vector Machines (SVM) and Gaussian Processes Classifier (GPC) and a combination of both the classifiers. The classification results show a high correlation with soil moisture. We demonstrate that regions of a spinach crop responding to soil water deficit can be identified by using machine learning techniques with a high accuracy of 97%. This method could, in principle, be applied to any crop at a range of scales. PMID:24892284

Doubling the estimate of invertebrate biomass in a rainforest canopy.

PubMed

Ellwood, Martin D F; Foster, William A

2004-06-03

Forest canopies represent the functional interface between 90% of the Earth's terrestrial biomass and the atmosphere and include some of the most threatened of all terrestrial ecosystems. However, we lack even a basic understanding of how the biomass of plants and animals is distributed throughout forest canopies, even though this information is vital for estimating energy flow, carbon cycling, resource use and the transfer of materials within this ecosystem. Here we measure the biomass of invertebrates living in a common rainforest epiphyte, describe a striking relationship between fern size and the biomass of animals within the ferns, and reveal that one large epiphyte may contain an invertebrate biomass similar to that found in the whole of the rest of the tree crown on which it is growing. Using these data, we show that including the fauna of these epiphytes--a neglected component in rainforest ecosystems--can more than double our estimate of the total invertebrate biomass in an entire rainforest canopy.

Chemistry of through-fall and stem-flow leachate following rainfall simulation over pinyon and juniper

USDA-ARS?s Scientific Manuscript database

We hypothesized that leachate from pinyon and juniper canopies, following rainfall events, may contribute sizable levels of solutes and C to the soil surface. We quantified solutes and dissolved carbon in stem-flow (SF) and through-fall (TF) following replicated rainfall simulation events in a pinyo...

Scaling Laws in Canopy Flows: A Wind-Tunnel Analysis

NASA Astrophysics Data System (ADS)

Segalini, Antonio; Fransson, Jens H. M.; Alfredsson, P. Henrik

2013-08-01

An analysis of velocity statistics and spectra measured above a wind-tunnel forest model is reported. Several measurement stations downstream of the forest edge have been investigated and it is observed that, while the mean velocity profile adjusts quickly to the new canopy boundary condition, the turbulence lags behind and shows a continuous penetration towards the free stream along the canopy model. The statistical profiles illustrate this growth and do not collapse when plotted as a function of the vertical coordinate. However, when the statistics are plotted as function of the local mean velocity (normalized with a characteristic velocity scale), they do collapse, independently of the streamwise position and freestream velocity. A new scaling for the spectra of all three velocity components is proposed based on the velocity variance and integral time scale. This normalization improves the collapse of the spectra compared to existing scalings adopted in atmospheric measurements, and allows the determination of a universal function that provides the velocity spectrum. Furthermore, a comparison of the proposed scaling laws for two different canopy densities is shown, demonstrating that the vertical velocity variance is the most sensible statistical quantity to the characteristics of the canopy roughness.

On the Pollutant Plume Dispersion in the Urban Canopy Layer over 2D Idealized Street Canyons: A Large-Eddy Simulation Approach

NASA Astrophysics Data System (ADS)

Wong, Colman C. C.; Liu, Chun-Ho

2010-05-01

Anthropogenic emissions are the major sources of air pollutants in urban areas. To improve the air quality in dense and mega cities, a simple but reliable prediction method is necessary. In the last five decades, the Gaussian pollutant plume model has been widely used for the estimation of air pollutant distribution in the atmospheric boundary layer (ABL) in an operational manner. Whereas, it was originally designed for rural areas with rather open and flat terrain. The recirculating flows below the urban canopy layer substantially modify the near-ground urban wind environment and so does the pollutant distribution. Though the plume height and dispersion are often adjusted empirically, the accuracy of applying the Gaussian pollutant plume model in urban areas, of which the bottom of the flow domain consists of numerous inhomogeneous buildings, is unclear. To elucidate the flow and pollutant transport, as well as to demystify the uncertainty of employing the Gaussian pollutant plume model over urban roughness, this study was performed to examine how the Gaussian-shape pollutant plume in the urban canopy layer is modified by the idealized two-dimensional (2D) street canyons at the bottom of the ABL. The specific objective is to develop a parameterization so that the geometric effects of urban morphology on the operational pollutant plume dispersion models could be taken into account. Because atmospheric turbulence is the major means of pollutant removal from street canyons to the ABL, the large-eddy simulation (LES) was adopted to calculate explicitly the flows and pollutant transport in the urban canopy layer. The subgrid-scale (SGS) turbulent kinetic energy (TKE) conservation was used to model the SGS processes in the incompressible, isothermal conditions. The computational domain consists of 12 identical idealized street canyons of unity aspect ratio which were placed evenly in the streamwise direction. Periodic boundary conditions (BCs) for the flow were applied in the horizontal and the spanwise directions. The prevalent wind was driven by a background pressure gradient in the roughness sublayer only, no background force was prescribed inside the street canyons. While the periodic BC of pollutant was used in the spanwise direction, zero pollutant and an open BC were applied, respectively, at the inflow and outflow of the streamwise extent to avoid pollutant being reflected back into the computational domain. The ground of the first street canyon was assigned as the pollutant source on which a BC of constant pollutant concentration was prescribed. The LES results showed that, in the neutrally stratified ABL, the pollutant distribution in the urban canopy layer resembled the Gaussian plume shape in general even recirculating flows were observed in the street canyons. The roof-level horizontal profile of pollutant concentration in the streamwise direction showed that the sharp drop on the leeward side of each street canyon was likely caused by the air and pollutant entrainments. On the windward side of each street canyon, a mild increase in pollutant concentration was observed that did not follow the Gaussian plume closely. Those deviations extended to a certain height over the roof level of the street canyons. It in turn suggests that the Gaussian pollutant plume model should be applied with caution in the urban canopy layer in the vicinity over urban roughness. To further analyze the effects of urban roughness on the plume dispersion in detail, a few LES calculations with different aspect ratios are currently being undertaken so as to compare with the current LES results.

Challenges to estimating tree height via LiDAR in closed-canopy forest: a parable from western Oregon

Treesearch

Demetrios Gatziolis; Jeremy S. Fried; Vicente S. Monleon

2010-01-01

We examine the accuracy of tree height estimates obtained via light detection and ranging (LiDAR) in a temperate rainforest characterized by complex terrain, steep slopes, and high canopy cover. The evaluation was based on precise top and base locations for > 1,000 trees in 45 plots distributed across three forest types, a dense network of ground elevation...

Exploring canopy structure and function as a potential mechanism of sustain carbon sequestration in aging forests

NASA Astrophysics Data System (ADS)

Fotis, A. T.; Curtis, P.; Ricart, R.

2013-12-01

The notion that old-growth forests reach carbon neutrality has recently been challenged, but the mechanisms responsible for continued productivity have remained elusive. Increases in canopy structural complexity, defined by high horizontal and vertical variability in leaf distribution (rugosity), has been proposed as a mechanism for sustained high rates of above ground net primary production (ANPPw) in forests up to ~170 years by enhancing light use efficiency (LUE) and nitrogen use efficiency (NUE). However, a detailed understanding of how rugosity affects resource distribution within and among trees leading to greater LUE and NUE is not known. We propose that leaves in high rugosity plots receive greater photosynthetic photon flux density (PPFD) than leaves in low rugosity plots, causing shifts from shade- to sun- adapted leaves into deeper portions of the canopy, which is thought to increase the photosynthetic capacity of individuals and lead to higher carbon assimilation in forests. The goal of this research was to: 1) quantify different canopy structural characteristics using a portable canopy LiDAR (PCL) and; 2) assess how these structural characteristics affect resource distribution and subsequent changes in leaf morphological, physiological and biochemical traits in three broadleaf species (e.g., Acer rubrum, Quercus rubra and Fagus grandifolia) and one conifer species (e.g., Pinus strobus) at different levels in the canopy in plots with similar leaf are index (LAI) but highly contrasting rugosity levels. We found that gap fraction had a strong positive correlation with rugosity. High rugosity plots had a bimodal distribution of LAI that was concentrated at the top and bottom of the canopy with an open midstory (between 10-50% of total canopy height) whereas low rugosity plots had a more even distribution of leaves. Leaf mass per area (LMA) of all broadleaved species had a strong positive correlation with cumulative gap fraction (P. strobus had a relatively weaker, but strong positive correlation). On average, Q. rubra and F. grandifolia had greater LMA in high rugosity plots while LMA was greater for A. rubrum and P. strobus in low rugosity plots. These findings suggest that species are responding differently to canopy structural complexity and that leaf arrangement in space plays an important role in determining leaf level traits. Furthermore, this research demonstrates that PCL can be used for quick identification of canopy traits (e.g., average LMA) relevant to photosynthetic capacity, and thus, carbon sequestration potential, and therefore may become an important tool in forest management.

Variation in foliar respiration and wood CO2 efflux rates among species and canopy layers in a wet tropical forest.

PubMed

Asao, Shinichi; Bedoya-Arrieta, Ricardo; Ryan, Michael G

2015-02-01

As tropical forests respond to environmental change, autotrophic respiration may consume a greater proportion of carbon fixed in photosynthesis at the expense of growth, potentially turning the forests into a carbon source. Predicting such a response requires that we measure and place autotrophic respiration in a complete carbon budget, but extrapolating measurements of autotrophic respiration from chambers to ecosystem remains a challenge. High plant species diversity and complex canopy structure may cause respiration rates to vary and measurements that do not account for this complexity may introduce bias in extrapolation more detrimental than uncertainty. Using experimental plantations of four native tree species with two canopy layers, we examined whether species and canopy layers vary in foliar respiration and wood CO2 efflux and whether the variation relates to commonly used scalars of mass, nitrogen (N), photosynthetic capacity and wood size. Foliar respiration rate varied threefold between canopy layers, ∼0.74 μmol m(-2) s(-1) in the overstory and ∼0.25 μmol m(-2) s(-1) in the understory, but little among species. Leaf mass per area, N and photosynthetic capacity explained some of the variation, but height explained more. Chamber measurements of foliar respiration thus can be extrapolated to the canopy with rates and leaf area specific to each canopy layer or height class. If area-based rates are sampled across canopy layers, the area-based rate may be regressed against leaf mass per area to derive the slope (per mass rate) to extrapolate to the canopy using the total leaf mass. Wood CO2 efflux varied 1.0-1.6 μmol m(-2) s(-1) for overstory trees and 0.6-0.9 μmol m(-2) s(-1) for understory species. The variation in wood CO2 efflux rate was mostly related to wood size, and little to species, canopy layer or height. Mean wood CO2 efflux rate per surface area, derived by regressing CO2 efflux per mass against the ratio of surface area to mass, can be extrapolated to the stand using total wood surface area. The temperature response of foliar respiration was similar for three of the four species, and wood CO2 efflux was similar between wet and dry seasons. For these species and this forest, vertical sampling may yield more accurate estimates than would temporal sampling. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Canopy BRF simulation of forest with different crown shape and height in larger scale based on Radiosity method

NASA Astrophysics Data System (ADS)

Song, Jinling; Qu, Yonghua; Wang, Jindi; Wan, Huawei; Liu, Xiaoqing

2007-06-01

Radiosity method is based on the computer simulation of 3D real structures of vegetations, such as leaves, branches and stems, which are composed by many facets. Using this method we can simulate the canopy reflectance and its bidirectional distribution of the vegetation canopy in visible and NIR regions. But with vegetations are more complex, more facets to compose them, so large memory and lots of time to calculate view factors are required, which are the choke points of using Radiosity method to calculate canopy BRF of lager scale vegetation scenes. We derived a new method to solve the problem, and the main idea is to abstract vegetation crown shapes and to simplify their structures, which can lessen the number of facets. The facets are given optical properties according to the reflectance, transmission and absorption of the real structure canopy. Based on the above work, we can simulate the canopy BRF of the mix scenes with different species vegetation in the large scale. In this study, taking broadleaf trees as an example, based on their structure characteristics, we abstracted their crowns as ellipsoid shells, and simulated the canopy BRF in visible and NIR regions of the large scale scene with different crown shape and different height ellipsoids. Form this study, we can conclude: LAI, LAD the probability gap, the sunlit and shaded surfaces are more important parameter to simulate the simplified vegetation canopy BRF. And the Radiosity method can apply us canopy BRF data in any conditions for our research.

Optimization of canopy conductance models from concurrent measurements of sap flow and stem water potential on Drooping Sheoak in South Australia

NASA Astrophysics Data System (ADS)

Wang, Hailong; Guan, Huade; Deng, Zijuan; Simmons, Craig T.

2014-07-01

Canopy conductance (gc) is a critical component in hydrological modeling for transpiration estimate. It is often formulated as functions of environmental variables. These functions are climate and vegetation specific. Thus, it is important to determine the appropriate functions in gc models and corresponding parameter values for a specific environment. In this study, sap flow, stem water potential, and microclimatic variables were measured for three Drooping Sheoak (Allocasuarina verticillata) trees in year 2011, 2012, and 2014. Canopy conductance was calculated from the inversed Penman-Monteith (PM) equation, which was then used to examine 36 gc models that comprise different response functions. Parameters were optimized using the DiffeRential Evolution Adaptive Metropolis (DREAM) model based on a training data set in 2012. Use of proper predawn stem water potential function, vapor pressure deficit function, and temperature function improves model performance significantly, while no pronounced difference is observed between models that differ in solar radiation functions. The best model gives a correlation coefficient of 0.97, and root-mean-square error of 0.0006 m/s in comparison to the PM-calculated gc. The optimized temperature function shows different characteristics from its counterparts in other similar studies. This is likely due to strong interdependence between air temperature and vapor pressure deficit in the study area or Sheoak tree physiology. Supported by the measurements and optimization results, we suggest that the effects of air temperature and vapor pressure deficit on canopy conductance should be represented together.

Insects on flowers: The unexpectedly high biodiversity of flower-visiting beetles in a tropical rainforest canopy.

PubMed

Wardhaugh, Carl W; Stork, Nigel E; Edwards, Will; Grimbacher, Peter S

2013-01-01

Insect biodiversity peaks in tropical rainforest environments where a large but as yet unknown proportion of species are found in the canopy. While there has been a proliferation of insect biodiversity research undertaken in the rainforest canopy, most studies focus solely on insects that inhabit the foliage. In a recent paper, we examined the distribution of canopy insects across five microhabitats (mature leaves, new leaves, flowers, fruit and suspended dead wood) in an Australian tropical rainforest, showing that the density (per dry weight gram of microhabitat) of insects on flowers were ten to ten thousand times higher than on the leaves. Flowers also supported a much higher number of species than expected based on their contribution to total forest biomass. Elsewhere we show that most of these beetle species were specialized to flowers with little overlap in species composition between different canopy microhabitats. Here we expand our discussion of the implications of our results with respect to specialization and the generation of insect biodiversity in the rainforest canopy. Lastly, we identify future directions for research into the biodiversity and specialization of flower-visitors in complex tropical rainforests.

Experimental manipulation of leaf litter colonization by aquatic invertebrates in a third order tropical stream.

PubMed

Uieda, V S; Carvalho, E M

2015-05-01

Through a manipulative experiment, the colonization of leaf litter by invertebrates was investigated in two sections of a tropical stream (spatial scale) that differed in function of the canopy cover, one with the presence (closed area) and another without riparian vegetation (open area), during one month of the dry and one of the wet season (temporal scale). The work aimed to verify differences related to four variables: season, canopy cover, leaf type and leaf condition. Litter bags containing arboreal and herbaceous leaves (leaf type variable), non-conditioned and preconditioned (leaf condition variable) were placed at the bottom of the stream in each area (canopy cover variable) and season (dry and wet), and removed after 13-day colonization. The analysis of the remaining litter dry mass per leaf bag emphasizes differences related mainly to seasonality, canopy cover and leaf type, although leaf condition was also important when combined with those three factors. Comparing the abundance of invertebrates per treatment, there was a tendency of high predominance of Chironomidae during the dry season and greater taxa diversity and evenness during the wet season, when the water flow increase could alter the availability of microhabitats for local fauna. Even though canopy cover alone was not a significant source of variation in the abundance of invertebrates, the results showed a tendency of a combined effect of canopy cover with seasonality and leaf condition.

Observation of organized structure in turbulent flow within and above a forest canopy

NASA Technical Reports Server (NTRS)

Gao, W.; Shaw, R. H.; Paw u, K. T.

1989-01-01

Data obtained with seven triaxial sonic anemometer/thermometers and three Lyman-alpha hygrometers at an experimental site in Ontario, Canada reveal the coherent occurrence of ramp patterns of temperature and humidity at several levels within and above the deciduous forest considered. The ramps appear most clearly in the middle and upper portion of the forest, and near the top of the forest they are composed of a weak ejecting motion transporting warm and/or moist air out of the forest, followed by strong sweeps of cool and/or dry air penetrating into the canopy. In the middle and upper parts of the canopy, the sweeps are found to conduct a large proportion of the overall transfer between the forest and the lower atmosphere, with a lesser contribution from ejections.

Multiyear Multiseasonal Changes in Leaf and Canopy Traits Measured by AVIRIS over Ecosystems with Different Functional Type Characteristics Through the Progressive California Drought 2013-2015

NASA Astrophysics Data System (ADS)

Ustin, S.; Roth, K. L.; Huesca, M.; Casas, A.; Adeline, K.; Drewry, D.; Koltunov, A.; Ramirez, C.

2015-12-01

Given the known heterogeneity in ecological processes within plant communities in California, we questioned whether the concept of conventional plant functional types (cPFTs) was adequate to characterize the functionality of the dominant species in these communities. We examined seasonal (spring, summer, fall) airborne AVIRIS and MASTER imagery collected during three years of progressive drought in California, and airborne LiDAR acquired once, for ecosystems that represent a wide range of plant functional types, from annual agriculture and herbaceous perennial wetlands, to forests and shrublands, including broadleaf deciduous and evergreen species and conifer species. These data were used to determine the extent to which changes in canopy chemistry could be detected, quantified, and related to leaf and canopy traits that are indicators of physiological functioning (water content, Leaf Mass Area, total C, N, and pigments (chlorophyll a, b, and carotenoids). At the canopy scale we measured leaf area index, and for forests — species, height, canopy area, DBH, deciduous or evergreen, broadleaf or needleleaf, and gap size. Strong correlations between leaf and canopy traits were predictable and quantifiable from spectroscopy data. Key structural properties of canopy height, biomass and complexity, a measure of spatial and vertical heterogeneity, were predicted by AVIRIS and validated against LiDAR data. Our data supports the hypothesis that optical sensors provide more detailed information about the distribution and variability in leaf and canopy traits related to plant functionality than cPFTs.

Modelling the impact of the light regime on single tree transpiration based on 3D representations of plant architecture

NASA Astrophysics Data System (ADS)

Bittner, S.; Priesack, E.

2012-04-01

We apply a functional-structural model of tree water flow to single old-growth trees in a temperate broad-leaved forest stand. Roots, stems and branches are represented by connected porous cylinder elements further divided into the inner heartwood cylinders surrounded by xylem and phloem. Xylem water flow is simulated by applying a non-linear Darcy flow in porous media driven by the water potential gradient according to the cohesion-tension theory. The flow model is based on physiological input parameters such as the hydraulic conductivity, stomatal response to leaf water potential and root water uptake capability and, thus, can reflect the different properties of tree species. The actual root water uptake is calculated using also a non-linear Darcy law based on the gradient between root xylem water potential and rhizosphere soil water potential and by the simulation of soil water flow applying Richards equation. A leaf stomatal conductance model is combined with the hydrological tree and soil water flow model and a spatially explicit three-dimensional canopy light model. The structure of the canopy and the tree architectures are derived by applying an automatic tree skeleton extraction algorithm from point clouds obtained by use of a terrestrial laser scanner allowing an explicit representation of the water flow path in the stem and branches. The high spatial resolution of the root and branch geometry and their connectivity makes the detailed modelling of the water use of single trees possible and allows for the analysis of the interaction between single trees and the influence of the canopy light regime (including different fractions of direct sunlight and diffuse skylight) on the simulated sap flow and transpiration. The model can be applied at various sites and to different tree species, enabling the up-scaling of the water usage of single trees to the total transpiration of mixed stands. Examples are given to reveal differences between diffuse- and ring-porous tree species and to simulate the diurnal dynamics of transpiration, stem sap flux, and root water uptake observed during the vegetation period in the year 2009.

Biodiversity hanging by a thread: the importance of fungal litter-trapping systems in tropical rainforests

PubMed Central

Snaddon, Jake L.; Turner, Edgar C.; Fayle, Tom M.; Khen, Chey V.; Eggleton, Paul; Foster, William A.

2012-01-01

The exceptionally high species richness of arthropods in tropical rainforests hinges on the complexity of the forest itself: that is, on features such as the high plant diversity, the layered nature of the canopy and the abundance and the diversity of epiphytes and litter. We here report on one important, but almost completely neglected, piece of this complex jigsaw—the intricate network of rhizomorph-forming fungi that ramify through the vegetation of the lower canopy and intercept falling leaf litter. We show that this litter-trapping network is abundant and intercepts substantial amounts of litter (257.3 kg ha−1): this exceeds the amount of material recorded in any other rainforest litter-trapping system. Experimental removal of this fungal network resulted in a dramatic reduction in both the abundance (decreased by 70.2 ± 4.1%) and morphospecies richness (decreased by 57.4 ± 5.1%) of arthropods. Since the lower canopy levels can contain the highest densities of arthropods, the proportion of the rainforest fauna dependent on the fungal networks is likely to be substantial. Fungal litter-trapping systems are therefore a crucial component of habitat complexity, providing a vital resource that contributes significantly to rainforest biodiversity. PMID:22188674

Forest Canopy Processes in a Regional Chemical Transport Model

NASA Astrophysics Data System (ADS)

Makar, Paul; Staebler, Ralf; Akingunola, Ayodeji; Zhang, Junhua; McLinden, Chris; Kharol, Shailesh; Moran, Michael; Robichaud, Alain; Zhang, Leiming; Stroud, Craig; Pabla, Balbir; Cheung, Philip

2016-04-01

Forest canopies have typically been absent or highly parameterized in regional chemical transport models. Some forest-related processes are often considered - for example, biogenic emissions from the forests are included as a flux lower boundary condition on vertical diffusion, as is deposition to vegetation. However, real forest canopies comprise a much more complicated set of processes, at scales below the "transport model-resolved scale" of vertical levels usually employed in regional transport models. Advective and diffusive transport within the forest canopy typically scale with the height of the canopy, and the former process tends to dominate over the latter. Emissions of biogenic hydrocarbons arise from the foliage, which may be located tens of metres above the surface, while emissions of biogenic nitric oxide from decaying plant matter are located at the surface - in contrast to the surface flux boundary condition usually employed in chemical transport models. Deposition, similarly, is usually parameterized as a flux boundary condition, but may be differentiated between fluxes to vegetation and fluxes to the surface when the canopy scale is considered. The chemical environment also changes within forest canopies: shading, temperature, and relativity humidity changes with height within the canopy may influence chemical reaction rates. These processes have been observed in a host of measurement studies, and have been simulated using site-specific one-dimensional forest canopy models. Their influence on regional scale chemistry has been unknown, until now. In this work, we describe the results of the first attempt to include complex canopy processes within a regional chemical transport model (GEM-MACH). The original model core was subdivided into "canopy" and "non-canopy" subdomains. In the former, three additional near-surface layers based on spatially and seasonally varying satellite-derived canopy height and leaf area index were added to the original model structure. Process methodology for deposition, biogenic emissions, shading, vertical diffusion, advection, chemical reactive environment and particle microphysics were modified to account for expected conditions within the forest canopy and the additional layers. The revised and original models were compared for a 10km resolution domain covering North America, for a one-month duration simulation. The canopy processes were found to have a very significant impact on model results. We will present a comparison to network observations which suggests that forest canopy processes may account for previously unexplained local and regional biases in model ozone predictions noted in GEM-MACH and other models. The impact of the canopy processes on NO2, PM2.5, and SO2 performance will also be presented and discussed.

Aerial dispersal of particles emitted inside plant canopies: Application to the spread of plant diseases

NASA Astrophysics Data System (ADS)

Pan, Ying

This work combines numerical, experimental, and theoretical methods to investigate the dispersion of particles inside and above plant canopies. The large-eddy simulation (LES) approach is used to reproduce turbulence statistics and three-dimensional particle dispersion within the canopy roughness sublayer. The Eulerian description of conservation laws of fluid momentum and particle concentration implies that the continuous concentration field is advected by the continuous flow field. Within the canopy, modifications are required for the filtered momentum and concentration equations, because spatial filtering of flow variables and concentration field is inapplicable to a control volume consisting of both fluid and solid elements. In this work, the canopy region is viewed as a space occupied by air only. The sink of airflow momentum induced by forces acting on the surfaces of canopy elements is parameterized as a non-conservative virtual body force that dissipates the kinetic energy of the air. This virtual body force must reflect the characteristic of the surface forces exerted by canopy elements within the control volume, and is parameterized as a "drag force" following standard practice in LES studies. Specifically, the "drag force" is calculated as a product of a drag coefficient, the projected leaf area density, and the square of velocity. Using a constant drag coefficient, this model allows first-order accuracy in reproducing the vertically integrated sink of momentum within the canopy layer for airflows of high Reynolds number. The corresponding LES results of first- and second-order turbulence statistics are in good agreement with experimental data obtained in the field interior, within and just above mature maize canopies. However, the distribution of momentum sink among weak and strong events has not been well reproduced, inferred from the significant underestition of streamwise and vertical velocity skewness as well as the fractions of vertical momentum flux transported by strong events. Using a velocity-dependent drag coefficient that accounts for the effect of plant reconfiguration, the "drag force" model leads to LES results of streamwise and vertical velocity skewness as well as the fractions of vertical momentum flux transported by strong events in better agreement with field experimental data. The link between plant reconfiguration and turbulence dynamics within the canopy roughness sublayer is further investigated. The "reconfiguration drag model" using velocity-dependent drag coefficient is revised to incorporate a theoretical model of the force balance on individual crosswind blades. In the LES, the dimension and degree of the reconfiguration of canopy elements affect the magnitude and position of peak streamwise velocity skewness within the canopy as well as the fractions of vertical momentum flux transported by strong events. The streamwise velocity skewness is shown to be related to the penetration of strong events into the canopy, which is associated with the passage of canopy-scale coherent eddies. With the profile of mean vertical momentum flux constrained by field experimental data, changing the model of drag coefficient induces negligible changes in the vertically integrated "drag force" within the canopy layer. Consequently, first- and second-order turbulence statistics remain approximately the same. However, enhancing the rate of decrease of drag coefficient with increasing velocity increases the streamwise and vertical velocity skewness, the fractions of vertical momentum flux transported by strong events, as well as the ratio between vertical momentum flux transported by relatively strong head-down "sweeps" and relatively weak head-up "ejections." These results confirmed the inadequacy of describing the effects of canopy-scale coherent structures using just first- and second-order turbulence statistics. The filtered concentration equation is applied to the dispersion of particles within the canopy roughness sublayer, assuming that a virtual continuous concentration field is advected by a virtual continuous velocity field. A canopy deposition model is used to model the sink of particle concentration associated with the impaction, sedimentation, retention, and re-entrainment of particles on the surfaces of canopy elements. LES results of mean particle concentration field and mean ground deposition rate were evaluated against data obtained during an artificial continuous point-source release experiment. Accounting for the effect of reconfiguration by using a velocity dependent drag coefficient leads to better agreement between LES results and field experimental data of the mean particle concentration field, suggesting the importance of reproducing the distribution of momentum sink among weak and strong events for reproducing the dispersion of particles. LES results obtained using a velocity-dependent drag coefficient are analyzed to estimate essential properties for the occurrence of plant disease epidemics. The most interesting finding is that an existing analytical function can be used to model the crosswind-integrated mean concentration field above the canopy normalized by the escape fraction for particles released from the field interior. (Abstract shortened by ProQuest.).

Deploying Fourier Coefficients to Unravel Soybean Canopy Diversity.

PubMed

Jubery, Talukder Z; Shook, Johnathon; Parmley, Kyle; Zhang, Jiaoping; Naik, Hsiang S; Higgins, Race; Sarkar, Soumik; Singh, Arti; Singh, Asheesh K; Ganapathysubramanian, Baskar

2016-01-01

Soybean canopy outline is an important trait used to understand light interception ability, canopy closure rates, row spacing response, which in turn affects crop growth and yield, and directly impacts weed species germination and emergence. In this manuscript, we utilize a methodology that constructs geometric measures of the soybean canopy outline from digital images of canopies, allowing visualization of the genetic diversity as well as a rigorous quantification of shape parameters. Our choice of data analysis approach is partially dictated by the need to efficiently store and analyze large datasets, especially in the context of planned high-throughput phenotyping experiments to capture time evolution of canopy outline which will produce very large datasets. Using the Elliptical Fourier Transformation (EFT) and Fourier Descriptors (EFD), canopy outlines of 446 soybean plant introduction (PI) lines from 25 different countries exhibiting a wide variety of maturity, seed weight, and stem termination were investigated in a field experiment planted as a randomized complete block design with up to four replications. Canopy outlines were extracted from digital images, and subsequently chain coded, and expanded into a shape spectrum by obtaining the Fourier coefficients/descriptors. These coefficients successfully reconstruct the canopy outline, and were used to measure traditional morphometric traits. Highest phenotypic diversity was observed for roundness, while solidity showed the lowest diversity across all countries. Some PI lines had extraordinary shape diversity in solidity. For interpretation and visualization of the complexity in shape, Principal Component Analysis (PCA) was performed on the EFD. PI lines were grouped in terms of origins, maturity index, seed weight, and stem termination index. No significant pattern or similarity was observed among the groups; although interestingly when genetic marker data was used for the PCA, patterns similar to canopy outline traits was observed for origins, and maturity indexes. These results indicate the usefulness of EFT method for reconstruction and study of canopy morphometric traits, and provides opportunities for data reduction of large images for ease in future use.

Below-Canopy Isoprene Nitrate Chemistry and Dynamics in a Mixed Coniferous/Deciduous Forest Canopy during the 2016 PROPHET-AMOS Summer Field Campaign.

NASA Astrophysics Data System (ADS)

Desrochers, S. J.; Slade, J. H., Jr.; Shepson, P. B.; Alwe, H. D.; Millet, D. B.; Kavassalis, S.; Shi, Q.; Murphy, J. G.; Bloss, W.; Wood, E.; Stevens, P. S.; Mauldin, L.; Cantrell, C. A.; Kim, T.; Zhou, X.; Helmig, D.; Shutter, J. D.; Rivera, J. C.; Keutsch, F. N.; Flynn, J. H., III; Alvarez, S. L.; Erickson, M.; Wang, W.; Griffin, R. J.; Bui, A. T.; Kim, K.; Wallace, H. W., IV

2017-12-01

Isoprene is the most abundant biogenic volatile organic compound (BVOC) emitted in forest ecosystems. Isoprene hydroxynitrates (IN) can be produced via OH oxidation of isoprene in the presence of NOx, thereby sequestering NOx, and limiting ozone production. Furthermore, IN can lead to the formation of secondary organic aerosols (SOA), which affect air quality and radiative forcing. Forest environments are often complex in terms of isoprene emission as a function of height through the canopy, and to date, there has been little study of chemistry below the canopy. However, the above- and below-canopy environments can be quite different, e.g. in terms of irradiance, NOx, and temperature. Thus, for example, there can be significantly more nitrate radical chemistry below canopy during daytime. Here we present and discuss IN measurements from the 2016 PROPHET-AMOS summer field campaign at the University of Michigan Biological Station (UMBS). IN was sampled from inlets at two heights, below the canopy and within the canopy, using a single quadrupole chemical ionization mass spectrometer, using I- ion chemistry. Differences in [IN] measured from the two inlets varied throughout the campaign, indicating a difference in the importance of light and dark dominated IN production pathways. Measurements of isoprene, terpenes, OH, HONO, HCHO, NOx, O3, HO2, H2O, jO3, jNO2, and jNO3 values conducted during the campaign were used to constrain a 0-D box model to simulate IN concentrations in order to better understand the influence of local-scale chemistry on IN production and destruction, and mixing below and through the forest canopy. Here we will compare measurements with model results, and discuss the implications for IN processing and mixing under the canopy and for nitrogen exchange above and below the forest canopy environment.

Verification of a One-Dimensional Model of CO2 Atmospheric Transport Inside and Above a Forest Canopy Using Observations at the Norunda Research Station

NASA Astrophysics Data System (ADS)

Kovalets, Ivan; Avila, Rodolfo; Mölder, Meelis; Kovalets, Sophia; Lindroth, Anders

2018-02-01

A model of CO2 atmospheric transport in vegetated canopies is tested against measurements of the flow, as well as CO2 concentrations at the Norunda research station located inside a mixed pine-spruce forest. We present the results of simulations of wind-speed profiles and CO2 concentrations inside and above the forest canopy with a one-dimensional model of profiles of the turbulent diffusion coefficient above the canopy accounting for the influence of the roughness sub-layer on turbulent mixing according to Harman and Finnigan (Boundary-Layer Meteorol 129:323-351, 2008; hereafter HF08). Different modelling approaches are used to define the turbulent exchange coefficients for momentum and concentration inside the canopy: (1) the modified HF08 theory—numerical solution of the momentum and concentration equations with a non-constant distribution of leaf area per unit volume; (2) empirical parametrization of the turbulent diffusion coefficient using empirical data concerning the vertical profiles of the Lagrangian time scale and root-mean-square deviation of the vertical velocity component. For neutral, daytime conditions, the second-order turbulence model is also used. The flexibility of the empirical model enables the best fit of the simulated CO2 concentrations inside the canopy to the observations, with the results of simulations for daytime conditions inside the canopy layer only successful provided the respiration fluxes are properly considered. The application of the developed model for radiocarbon atmospheric transport released in the form of ^{14}CO2 is presented and discussed.

Verification of a One-Dimensional Model of CO2 Atmospheric Transport Inside and Above a Forest Canopy Using Observations at the Norunda Research Station

NASA Astrophysics Data System (ADS)

Kovalets, Ivan; Avila, Rodolfo; Mölder, Meelis; Kovalets, Sophia; Lindroth, Anders

2018-07-01

A model of CO2 atmospheric transport in vegetated canopies is tested against measurements of the flow, as well as CO2 concentrations at the Norunda research station located inside a mixed pine-spruce forest. We present the results of simulations of wind-speed profiles and CO2 concentrations inside and above the forest canopy with a one-dimensional model of profiles of the turbulent diffusion coefficient above the canopy accounting for the influence of the roughness sub-layer on turbulent mixing according to Harman and Finnigan (Boundary-Layer Meteorol 129:323-351, 2008; hereafter HF08). Different modelling approaches are used to define the turbulent exchange coefficients for momentum and concentration inside the canopy: (1) the modified HF08 theory—numerical solution of the momentum and concentration equations with a non-constant distribution of leaf area per unit volume; (2) empirical parametrization of the turbulent diffusion coefficient using empirical data concerning the vertical profiles of the Lagrangian time scale and root-mean-square deviation of the vertical velocity component. For neutral, daytime conditions, the second-order turbulence model is also used. The flexibility of the empirical model enables the best fit of the simulated CO2 concentrations inside the canopy to the observations, with the results of simulations for daytime conditions inside the canopy layer only successful provided the respiration fluxes are properly considered. The application of the developed model for radiocarbon atmospheric transport released in the form of ^{14}CO2 is presented and discussed.

Estimation of In-canopy Flux Distributions of Reactive Nitrogen and Sulfur within a Mixed Hardwood Forest in Southern Appalachia

NASA Astrophysics Data System (ADS)

Wu, Z.; Walker, J. T.; Chen, X.; Oishi, A. C.; Duman, T.

2017-12-01

Estimating the source/sink distribution and vertical fluxes of air pollutants within and above forested canopies is critical for understanding biological, physical, and chemical processes influencing the soil-vegetation-atmosphere exchange. The vertical source-sink profiles of reactive nitrogen and sulfur were examined using multiple inverse modeling methods in a mixed hardwood forest in the southern Appalachian Mountains where the ecosystem is highly sensitive to loads of pollutant from atmospheric depositions. Measurements of the vertical concentration profiles of ammonia (NH3), nitric acid (HNO3), sulfur dioxide (SO2), and ammonium (NH4+), nitrate (NO3-), and sulfate (SO42-) in PM2.5 were measured during five study periods between May 2015 and August 2016. The mean concentration of NH3 decreased with height in the upper canopy and increased below the understory toward the forest floor, indicating that the canopy was a sink for NH3 but the forest floor was a source. All other species exhibited patterns of monotonically decreasing concentration from above the canopy to the forest floor. Using the measured concentration profiles, we simulated the within-canopy flow fields and estimated the vertical source-sink flux profiles using three inverse approaches: a Eulerian high-order closure model (EUL), a Lagrangian localized near-field (LNF) model, and a new full Lagrangian stochastic model (LSM). The models were evaluated using the within- and above-canopy eddy covariance flux measurements of heat, CO2 and H2O. Differences between models were analyzed and the flux profiles were used to investigate the origin and fate of reactive nitrogen and sulfur compounds within the canopy. The knowledge gained in this study will benefit the development of soil-vegetation-atmosphere models capable of partitioning canopy-scale deposition of nitrogen and sulfur to specific ecosystem compartments.

The Impacts of Fluctuating Light on Crop Performance1[OPEN

PubMed Central

2018-01-01

Rapidly changing light conditions can reduce carbon gain and productivity in field crops because photosynthetic responses to light fluctuations are not instantaneous. Plant responses to fluctuating light occur across levels of organizational complexity from entire canopies to the biochemistry of a single reaction and across orders of magnitude of time. Although light availability and variation at the top of the canopy are largely dependent on the solar angle and degree of cloudiness, lower crop canopies rely more heavily on light in the form of sunflecks, the quantity of which depends mostly on canopy structure but also may be affected by wind. The ability of leaf photosynthesis to respond rapidly to these variations in light intensity is restricted by the relatively slow opening/closing of stomata, activation/deactivation of C3 cycle enzymes, and up-regulation/down-regulation of photoprotective processes. The metabolic complexity of C4 photosynthesis creates the apparently contradictory possibilities that C4 photosynthesis may be both more and less resilient than C3 to dynamic light regimes, depending on the frequency at which these light fluctuations occur. We review the current understanding of the underlying mechanisms of these limitations to photosynthesis in fluctuating light that have shown promise in improving the response times of photosynthesis-related processes to changes in light intensity. PMID:29192028

Application of the two-source energy balance model to partition evapotranspiration in an arid wine vineyard

NASA Astrophysics Data System (ADS)

Kool, Dilia; Kustas, William P.; Agam, Nurit

2016-04-01

The partitioning of evapotranspiration (ET) into transpiration (T), a productive water use, and soil water evaporation (E), which is generally considered a water loss, is highly relevant to agriculture in the light of increasing desertification and water scarcity. This task is challenged by the complexity of soil and plant interactions, coupled with changes in atmospheric and soil water content conditions. Many of the processes controlling water/energy exchange are not adequately modeled. The two-source energy balance model (TSEB) was evaluated and adapted for independent E and T estimations in an isolated drip-irrigated wine vineyard in the arid Negev desert. The TSEB model estimates ET by computing vegetation and soil energy fluxes using remotely sensed composite surface temperature, local weather data (solar radiation, air temperature and humidity, and wind speed), and vegetation metrics (row spacing, canopy height and width, and leaf area). The soil and vegetation energy fluxes are computed numerically using a system of temperature gradient and resistance equations; where soil and canopy temperatures are derived from the composite surface temperature. For estimation of ET, the TSEB model has been shown to perform well for various agricultural crops under a wide range of environmental conditions, but validation of T and E fluxes is limited to one study in a well-watered cotton crop. Extending the TSEB approach to water-limited vineyards demands careful consideration regarding how the complex canopy structure of vineyards will influence the accuracy of the partitioning between E and T. Data for evaluation of the TSEB model were collected over a season (bud break till harvest). Composite, canopy, and soil surface temperatures were measured using infrared thermometers. The composite vegetation and soil surface energy fluxes were assessed using independent measurements of net radiation, and soil, sensible and latent heat flux. The below canopy energy balance was assessed at the dry midrow position as well as the wet irrigated position directly underneath the vine row, where net radiation and soil heat flux were measured, sensible heat flux was computed indirectly, and E was calculated as the residual. While the below canopy energy balance approach used in this study allowed continuous assessment of E at daily intervals, instantaneous E fluxes could not be assessed due to vertical variability in shading below the canopy. Seasonal partitioning indicated that total E amounted to 9-11% of ET. Initial evaluation of the TSEB model indicated that discrepancies between modeled and measured fluxes can largely be attributed to net radiation partitioning. In addition, large diurnal variation at the soil surface requires adaptation of the soil heat flux formulations. Improved estimation of energy fluxes by accounting for the relatively complex canopy structure of vineyards will be highlighted.

Coupling fine-scale root and canopy structure using ground-based remote sensing

DOE PAGES

Hardiman, Brady S.; Gough, Christopher M.; Butnor, John R.; ...

2017-02-21

Ecosystem physical structure, defined by the quantity and spatial distribution of biomass, influences a range of ecosystem functions. Remote sensing tools permit the non-destructive characterization of canopy and root features, potentially providing opportunities to link above- and belowground structure at fine spatial resolution in functionally meaningful ways. To test this possibility, we employed ground-based portable canopy LiDAR (PCL) and ground penetrating radar (GPR) along co-located transects in forested sites spanning multiple stages of ecosystem development and, consequently, of structural complexity. We examined canopy and root structural data for coherence (i.e., correlation in the frequency of spatial variation) at multiple spatialmore » scales 10 m within each site using wavelet analysis. Forest sites varied substantially in vertical canopy and root structure, with leaf area index and root mass more becoming even vertically as forests aged. In all sites, above- and belowground structure, characterized as mean maximum canopy height and root mass, exhibited significant coherence at a scale of 3.5–4 m, and results suggest that the scale of coherence may increase with stand age. Our findings demonstrate that canopy and root structure are linked at characteristic spatial scales, which provides the basis to optimize scales of observation. Lastly, our study highlights the potential, and limitations, for fusing LiDAR and radar technologies to quantitatively couple above- and belowground ecosystem structure.« less

Coupling fine-scale root and canopy structure using ground-based remote sensing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hardiman, Brady S.; Gough, Christopher M.; Butnor, John R.

Ecosystem physical structure, defined by the quantity and spatial distribution of biomass, influences a range of ecosystem functions. Remote sensing tools permit the non-destructive characterization of canopy and root features, potentially providing opportunities to link above- and belowground structure at fine spatial resolution in functionally meaningful ways. To test this possibility, we employed ground-based portable canopy LiDAR (PCL) and ground penetrating radar (GPR) along co-located transects in forested sites spanning multiple stages of ecosystem development and, consequently, of structural complexity. We examined canopy and root structural data for coherence (i.e., correlation in the frequency of spatial variation) at multiple spatialmore » scales 10 m within each site using wavelet analysis. Forest sites varied substantially in vertical canopy and root structure, with leaf area index and root mass more becoming even vertically as forests aged. In all sites, above- and belowground structure, characterized as mean maximum canopy height and root mass, exhibited significant coherence at a scale of 3.5–4 m, and results suggest that the scale of coherence may increase with stand age. Our findings demonstrate that canopy and root structure are linked at characteristic spatial scales, which provides the basis to optimize scales of observation. Lastly, our study highlights the potential, and limitations, for fusing LiDAR and radar technologies to quantitatively couple above- and belowground ecosystem structure.« less

Evidence of hydraulic lift for pre-rainy season leaf out and dry-season stem water enrichment in Sclerocarya birrea, a tropical agroforestry tree

NASA Astrophysics Data System (ADS)

Ceperley, Natalie; Mande, Theophile; Rinaldo, Andrea; Parlange, Marc B.

2014-05-01

We use stable isotopes of water as tracers to follow water use by five Sclerocarya birrea trees in a catchment in South Eastern Burkina Faso interspersed with millet fields, gallery forest, Sudanian savanna, and fallow fields. Isotopic ratios were determined from water extracted from stems of the trees and sub-canopy soil of two of them, while nearby ground water, precipitation, and surface water was sampled weekly. A unique configuration of sensors connected with a wireless sensor network of meteorological stations measured sub-canopy shading, the temperature and humidity in the canopy, through-fall, and soil moisture under two of the trees. Both water extracted from sap and water extracted from soil is extremely enriched in the dry season, but drop to levels close to the ground water in February or March, which coincides with the growth of leaves. Dates of leaf out were confirmed by changes in δDH and δO18 concentrations of water, photographic documentation & pixel analysis, and analysis of sub-canopy radiation and proceeded the rise in humidity and flow that was later detected in the sub-canopy soil, the trunk of the tree (sap-flow), and atmosphere (canopy VPD). Examination of the isotopic signature suggests that size of tree plays an important role in duration and timing of this leaf-out as well as the degree of enrichment during the peak of the dry season. Further examination of the isotopic signatures of the roots suggested that the trees are performing hydraulic redistribution, or lifting the ground water and "sharing it" with the soil in the rooting zone in the dry season. The enriched level of xylem in this case is a product of water loss, and enrichment, along the travel path of the water from the roots to the tip of the stem, as evidenced by the variation according to size of tree. Vapor pressure deficit, soil water, and soil moisture interactions support this picture of interacting controls, separate from hydrologic triggers on the water movement in the tree.

Radiation transfer in plant canopies - Transmission of direct solar radiation and the role of leaf orientation

NASA Technical Reports Server (NTRS)

Verstraete, Michel M.

1987-01-01

Understanding the details of the interaction between the radiation field and plant structures is important climatically because of the influence of vegetation on the surface water and energy balance, but also biologically, since solar radiation provides the energy necessary for photosynthesis. The problem is complex because of the extreme variety of vegetation forms in space and time, as well as within and across plant species. This one-dimensional vertical multilayer model describes the transfer of direct solar radiation through a leaf canopy, accounting explicitly for the vertical inhomogeneities of a plant stand and leaf orientation, as well as heliotropic plant behavior. This model reproduces observational results on homogeneous canopies, but it is also well adapted to describe vertically inhomogeneous canopies. Some of the implications of leaf orientation and plant structure as far as light collection is concerned are briefly reviewed.

Insects on flowers

PubMed Central

Wardhaugh, Carl W.; Stork, Nigel E.; Edwards, Will; Grimbacher, Peter S.

2013-01-01

Insect biodiversity peaks in tropical rainforest environments where a large but as yet unknown proportion of species are found in the canopy. While there has been a proliferation of insect biodiversity research undertaken in the rainforest canopy, most studies focus solely on insects that inhabit the foliage. In a recent paper, we examined the distribution of canopy insects across five microhabitats (mature leaves, new leaves, flowers, fruit and suspended dead wood) in an Australian tropical rainforest, showing that the density (per dry weight gram of microhabitat) of insects on flowers were ten to ten thousand times higher than on the leaves. Flowers also supported a much higher number of species than expected based on their contribution to total forest biomass. Elsewhere we show that most of these beetle species were specialized to flowers with little overlap in species composition between different canopy microhabitats. Here we expand our discussion of the implications of our results with respect to specialization and the generation of insect biodiversity in the rainforest canopy. Lastly, we identify future directions for research into the biodiversity and specialization of flower-visitors in complex tropical rainforests. PMID:23802039

Quantifying seasonal dynamics of canopy structure and function using inexpensive narrowband spectral radiometers

NASA Astrophysics Data System (ADS)

Vierling, L. A.; Garrity, S. R.; Campbell, G.; Coops, N. C.; Eitel, J.; Gamon, J. A.; Hilker, T.; Krofcheck, D. J.; Litvak, M. E.; Naupari, J. A.; Richardson, A. D.; Sonnentag, O.; van Leeuwen, M.

2011-12-01

Increasing the spatial and temporal density of automated environmental sensing networks is necessary to quantify shifts in plant structure (e.g., leaf area index) and function (e.g., photosynthesis). Improving detection sensitivity can facilitate a mechanistic understanding by better linking plant processes to environmental change. Spectral radiometer measurements can be highly useful for tracking plant structure and function from diurnal to seasonal time scales and calibrating and validating satellite- and aircraft-based spectral measurements. However, dense ground networks of such instruments are challenging to establish due to the cost and complexity of automated instrument deployment. We therefore developed simple to operate, lightweight and inexpensive narrowband (~10nm bandwidth) spectral instruments capable of continuously measuring four to six discrete bands that have proven capacity to describe key physiological processes and structural features of plant canopies. These bands are centered at 530, 570, 675, 800, 880, and 970 nm to enable calculation of the physiological reflectance index (PRI), normalized difference vegetation index (NDVI), green NDVI (gNDVI), and water band index (WBI) collected above and within vegetation canopies. To date, measurements have been collected above grassland, semi-arid shrub steppe, piñon-juniper woodland, dense conifer forest, mixed deciduous-conifer forest, and cropland canopies, with additional measurements collected along vertical transects through a temperate conifer rainforest. Findings from this work indicate not only that key shifts in plant phenology, physiology, and structure can be captured using such instruments, but that the temporally dense nature of the measurements can help to disentangle heretofore unreported complexities of simultaneous phenological and structural change on canopy reflectance.

Integration of ALS and TLS for calibration and validation of LAI profiles from large footprint lidar

NASA Astrophysics Data System (ADS)

Armston, J.; Tang, H.; Hancock, S.; Hofton, M. A.; Dubayah, R.; Duncanson, L.; Fatoyinbo, T. E.; Blair, J. B.; Disney, M.

2016-12-01

The Global Ecosystem Dynamics Investigation (GEDI) is designed to provide measurements of forest vertical structure and above-ground biomass density (AGBD) over tropical and temperate regions. The GEDI is a multi-beam waveform lidar that will acquire transects of forest canopy vertical profiles in conditions of up to 99% canopy cover. These are used to produce a number of canopy height and profile metrics to model habitat suitability and AGBD. These metrics include vertical leaf area index (LAI) profiles, which require some pre-launch refinement of large-footprint waveform processing methods for separating canopy and ground returns and estimation of their reflectance. Previous research developments in modelling canopy gap probability to derive canopy and ground reflectance from waveforms have primarily used data from small-footprint instruments, however development of a generalized spatial model with uncertainty will be useful for interpreting and modelling waveforms from large-footprint instruments such as the NASA Land Vegetation and Ice Sensor (LVIS) with a view to implementation for GEDI. Here we present an analysis of waveform lidar data from the NASA Land Vegetation and Ice Sensor (LVIS), which were acquired in Gabon in February 2016 to support the NASA/ESA AfriSAR campaign. AfriSAR presents a unique opportunity to test refined methods for retrieval of LAI profiles in high above-ground biomass rainforests (up to 600 Mg/ha) with dense canopies (>90% cover), where the greatest uncertainty exists. Airborne and Terrestrial Laser Scanning data (TLS) were also collected, enabling quantification of algorithm performance in plots of dense canopy cover. Refinement of canopy gap probability and LAI profile modelling from large-footprint lidar was based on solving for canopy and ground reflectance parameters spatially by penalized least-squares. The sensitivities of retrieved cover and LAI profiles to variation in canopy and ground reflectance showed improvement compared to assuming a constant ratio. We evaluated the use of spatially proximate simple waveforms to interpret more complex waveforms with poor separation of canopy and ground returns. This work has direct implications for GEDI algorithm refinement.

Spatial patterns of ecohydrologic properties on a hillslope-alluvial fan transect, central New Mexico

USGS Publications Warehouse

Bedford, D.R.; Small, E.E.

2008-01-01

Spatial patterns of soil properties are linked to patchy vegetation in arid and semi-arid landscapes. The patterns of soil properties are generally assumed to be linked to the ecohydrological functioning of patchy dryland vegetation ecosystems. We studied the effects of vegetation canopy, its spatial pattern, and landforms on soil properties affecting overland flow and infiltration in shrublands at the Sevilleta National Wildlife Refuge/LTER in central New Mexico, USA. We studied the patterns of microtopography and saturated conductivity (Ksat), and generally found it to be affected by vegetation canopy and pattern, as well as landform type. On gently sloping alluvial fans, both microtopography and Ksat are high under vegetation canopy and decay with distance from plant center. On steeper hillslope landforms, only microtopography was significantly higher under vegetation canopy, while there was no significant difference in Ksat between vegetation and interspaces. Using geostatistics, we found that the spatial pattern of soil properties was determined by the spatial pattern of vegetation. Most importantly, the effects of vegetation were present in the unvegetated interspaces 2-4 times the extent of vegetation canopy, on the order of 2-3??m. Our results have implications for the understanding the ecohydrologic function of semi-arid ecosystems as well as the parameterization of hydrologic models. ?? 2007 Elsevier B.V. All rights reserved.

Ground based remote sensing and physiological measurements provide novel insights into canopy photosynthetic optimization in arctic shrubs

NASA Astrophysics Data System (ADS)

Magney, T. S.; Griffin, K. L.; Boelman, N.; Eitel, J.; Greaves, H.; Prager, C.; Logan, B.; Oliver, R.; Fortin, L.; Vierling, L. A.

2014-12-01

Because changes in vegetation structure and function in the Arctic are rapid and highly dynamic phenomena, efforts to understand the C balance of the tundra require repeatable, objective, and accurate remote sensing methods for estimating aboveground C pools and fluxes over large areas. A key challenge addressing the modelling of aboveground C is to utilize process-level information from fine-scale studies. Utilizing information obtained from high resolution remote sensing systems could help to better understand the C source/sink strength of the tundra, which will in part depend on changes in photosynthesis resulting from the partitioning of photosynthetic machinery within and among deciduous shrub canopies. Terrestrial LiDAR and passive hyperspectral remote sensing measurements offer an effective, repeatable, and scalable method to understand photosynthetic performance and partitioning at the canopy scale previously unexplored in arctic systems. Using a 3-D shrub canopy model derived from LiDAR, we quantified the light regime of leaves within shrub canopies to gain a better understanding of how light interception varies in response to the Arctic's complex radiation regime. This information was then coupled with pigment sampling (i.e., xanthophylls, and Chl a/b) to evaluate the optimization of foliage photosynthetic capacity within shrub canopies due to light availability. In addition, a lab experiment was performed to validate evidence of canopy level optimization via gradients of light intensity and leaf light environment. For this, hyperspectral reflectance (photochemical reflectance index (PRI)), and solar induced fluorescence (SIF)) was collected in conjunction with destructive pigment samples (xanthophylls) and chlorophyll fluorescence measurements in both sunlit and shaded canopy positions.

Relationship Between Remotely-sensed Vegetation Indices, Canopy Attributes and Plant Physiological Processes: What Vegetation Indices Can and Cannot Tell Us About the Landscape.

PubMed

Glenn, Edward P; Huete, Alfredo R; Nagler, Pamela L; Nelson, Stephen G

2008-03-28

Vegetation indices (VIs) are among the oldest tools in remote sensing studies. Although many variations exist, most of them ratio the reflection of light in the red and NIR sections of the spectrum to separate the landscape into water, soil, and vegetation. Theoretical analyses and field studies have shown that VIs are near-linearly related to photosynthetically active radiation absorbed by a plant canopy, and therefore to light-dependent physiological processes, such as photosynthesis, occurring in the upper canopy. Practical studies have used time-series VIs to measure primary production and evapotranspiration, but these are limited in accuracy to that of the data used in ground truthing or calibrating the models used. VIs are also used to estimate a wide variety of other canopy attributes that are used in Soil-Vegetation-Atmosphere Transfer (SVAT), Surface Energy Balance (SEB), and Global Climate Models (GCM). These attributes include fractional vegetation cover, leaf area index, roughness lengths for turbulent transfer, emissivity and albedo. However, VIs often exhibit only moderate, non-linear relationships to these canopy attributes, compromising the accuracy of the models. We use case studies to illustrate the use and misuse of VIs, and argue for using VIs most simply as a measurement of canopy light absorption rather than as a surrogate for detailed features of canopy architecture. Used this way, VIs are compatible with "Big Leaf" SVAT and GCMs that assume that canopy carbon and moisture fluxes have the same relative response to the environment as any single leaf, simplifying the task of modeling complex landscapes.

Turbulent water vapor exchanges and two source energy balance model estimated fluxes of heterogeneous vineyard canopies

NASA Astrophysics Data System (ADS)

Los, S.; Hipps, L.; Alfieri, J. G.; Prueger, J. H.; Kustas, W. P.

2017-12-01

Agriculture in semi-arid regions is globally facing increasing stress on water resources. Hence, knowledge of water used in irrigated crops is essential for water resource management. However, quantifying spatial and temporal distribution of evapotranspiration (ET) has proven difficult because of the inherent complexities involved. Understanding of the complex biophysical relationships that govern ET is incomplete, particularly for heterogeneous vegetation. The USDA-ARS is developing a remotely-sensed ET modeling system that utilizes a two-source energy balance (TSEB) model capable of simulating turbulent water and energy exchange from measurements of radiometric land surface temperature. The modeling system has been tested over a number of vegetated surfaces and is currently being validated for vineyard sites in the Central Valley of California through the Grape Remote sensing Atmospheric Profiling & Evapotranspiration eXperiment (GRAPEX). The highly variable, elevated canopy structure and semi-arid climatic conditions of these sites give the opportunity to gain knowledge of both turbulent exchange processes and the TSEB model's ability to simulate turbulent fluxes for heterogeneous vegetation. Analyzed are fast-response (20 Hz) 3-D velocity, temperature, and humidity measurements gathered over 4 years at two vineyard sites. These data were collected at a height of 5 m, within the surface layer but above the canopy, and at 1.5 m, below the canopy top. Power spectra and cross-spectra are used to study behavior of turbulent water vapor exchanges and coupling between the canopy layer and surface layer under various atmospheric conditions. Frequent light winds and unstable daytime conditions, combined with the complicated canopy structure, often induce intermittent and episodic turbulence transport. This resulted in a modal behavior alternating between periods of more continuous canopy venting and periods where water vapor fluxes are dominated by transient, low frequency events. Aerodynamic resistances derived by the TSEB model are examined, and modeled fluxes of water and energy are compared to measured values for various conditions. Efforts to characterize periods of intermittent behavior are presented and particular attention to model performance is given to these intermittent periods.

Effects of trees on momentum exchange within and above a real urban environment

NASA Astrophysics Data System (ADS)

Salesky, S.; Giometto, M. G.; Christen, A.; Egli, P. E.; Schmid, M. F.; Tooke, T. R.; Coops, N. C.; Parlange, M. B.

2017-12-01

Large-eddy simulations (LES) are used to gain insight into the effects of trees on momentum transfer rates characterizing the atmosphere within and above a real urban canopy. Several areas are considered that are part of a neighbourhood in the city of Vancouver, BC, Canada where a small fraction of trees are taller than buildings. In this area, eight years of continuous wind and turbulence measurements are available from a 30 m meteorological tower. Buildings and vegetation geometries are obtained from airborne light detection and ranging (LiDAR) data. In the LES algorithm, buildings are accounted through an immersed boundary method, whereas vegetation is parameterized via a location-specific leaf area density. LES are performed varying wind direction and leaf area densities. Surface roughness lengths (z0) from both LES and tower measurements are sensitive to the 0 ≤ LAI/λ < 3 parameter, where LAI is the leaf area index and λ is the frontal area fraction of buildings characterizing a given canopy. For instance, tower measurements predict a 19% seasonal increase in z0, slightly lower than the 27% increase featured by LES for the most representative canopy (leaves-off LAI/λ = 0.74, leaves-on LAI/λ = 2.24). Removing vegetation from such a canopy would cause a dramatic drop of approximately 50% in z0 when compared to the reference summer value. The momentum displacement height (d) from LES also consistently increases as LAI/λ increases, due to the disproportionate amount of drag that the (few) relatively taller trees exert on the flow. Within the urban canopy, the effects of trees are twofold: on one hand, they act as a direct momentum sink for the mean flow; on the other, they reduce downward turbulent transport of high-momentum fluid, significantly reducing the wind intensity at the heights where people live and buildings consume energy.

An Investigation of Flow over High Roughness. Task I: Study of Airflow in Simulated Temperature and Tropical Forest Canopies, Fort Huachuca.

DTIC Science & Technology

ATMOSPHERIC MOTION, TREES), (*AEROSOLS, DIFFUSION ), TROPICAL REGIONS, SIMULATION, ATMOSPHERIC TEMPERATURE, TURBULENT BOUNDARY LAYER, ROUGHNESS, FORESTRY, ATMOSPHERE MODELS, WIND TUNNELS, COLORADO, MILITARY FACILITIES

Modelling the diurnal and seasonal dynamics of soil CO2 exchange in a semiarid ecosystem with high plant-interspace heterogeneity

NASA Astrophysics Data System (ADS)

Gong, Jinnan; Wang, Ben; Jia, Xin; Feng, Wei; Zha, Tianshan; Kellomäki, Seppo; Peltola, Heli

2018-01-01

We used process-based modelling to investigate the roles of carbon-flux (C-flux) components and plant-interspace heterogeneities in regulating soil CO2 exchanges (FS) in a dryland ecosystem with sparse vegetation. To simulate the diurnal and seasonal dynamics of FS, the modelling considered simultaneously the CO2 production, transport and surface exchanges (e.g. biocrust photosynthesis, respiration and photodegradation). The model was parameterized and validated with multivariate data measured during the years 2013-2014 in a semiarid shrubland ecosystem in Yanchi, northwestern China. The model simulation showed that soil rewetting could enhance CO2 dissolution and delay the emission of CO2 produced from rooting zone. In addition, an ineligible fraction of respired CO2 might be removed from soil volumes under respiration chambers by lateral water flows and root uptakes. During rewetting, the lichen-crusted soil could shift temporally from net CO2 source to sink due to the activated photosynthesis of biocrust but the restricted CO2 emissions from subsoil. The presence of plant cover could decrease the root-zone CO2 production and biocrust C sequestration but increase the temperature sensitivities of these fluxes. On the other hand, the sensitivities of root-zone emissions to water content were lower under canopy, which may be due to the advection of water flows from the interspace to canopy. To conclude, the complexity and plant-interspace heterogeneities of soil C processes should be carefully considered to extrapolate findings from chamber to ecosystem scales and to predict the ecosystem responses to climate change and extreme climatic events. Our model can serve as a useful tool to simulate the soil CO2 efflux dynamics in dryland ecosystems.

Wet canopy evaporation from a Puerto Rican lower montane rain forest: the importance of realistically estimated aerodynamic conductance

Treesearch

F. Holwerda; L.A. Bruijnzeel; F.N. Scatena; H.F. Vugts; A.G.C.A. Meesters

2012-01-01

Rainfall interception (I) was measured in 20 m tall Puerto Rican tropical forest with complex topography for a 1-year period using totalizing throughfall (TF) and stemflow (SF) gauges that were measured every 2–3 days. Measured values were then compared to evaporation under saturated canopy conditions (E) determined with the Penman–Monteith (P–M) equation, using (i)...

A Numerical Model Study of Nocturnal Drainage Flows with Strong Wind and Temperature Gradients.

NASA Astrophysics Data System (ADS)

Yamada, T.; Bunker, S.

1989-07-01

A second-moment turbulence-closure model described in Yamada and Bunker is used to simulate nocturnal drainage flows observed during the 1984 ASCOT field expedition in Brush Creek, Colorado. In order to simulate the observed strong wind directional shear and temperature gradients, two modifications are added to the model. The strong wind directional shear was maintained by introducing a `nudging' term in the equation of motion to guide the modeled winds in the layers above the ridge top toward the observed wind direction. The second modification was accomplished by reformulating the conservation equation for the potential temperature in such a way that only the deviation from the horizontally averaged value was prognostically computed.The vegetation distribution used in this study is undoubtedly crude. Nevertheless, the present simulation suggests that tall tree canopy can play an important role in producing inhomogeneous wind distribution, particularly in the levels below the canopy top.

Evaluating the performance of land surface model ORCHIDEE-CAN v1.0 on water and energy flux estimation with a single- and multi-layer energy budget scheme

NASA Astrophysics Data System (ADS)

Chen, Yiying; Ryder, James; Bastrikov, Vladislav; McGrath, Matthew J.; Naudts, Kim; Otto, Juliane; Ottlé, Catherine; Peylin, Philippe; Polcher, Jan; Valade, Aude; Black, Andrew; Elbers, Jan A.; Moors, Eddy; Foken, Thomas; van Gorsel, Eva; Haverd, Vanessa; Heinesch, Bernard; Tiedemann, Frank; Knohl, Alexander; Launiainen, Samuli; Loustau, Denis; Ogée, Jérôme; Vessala, Timo; Luyssaert, Sebastiaan

2016-09-01

Canopy structure is one of the most important vegetation characteristics for land-atmosphere interactions, as it determines the energy and scalar exchanges between the land surface and the overlying air mass. In this study we evaluated the performance of a newly developed multi-layer energy budget in the ORCHIDEE-CAN v1.0 land surface model (Organising Carbon and Hydrology In Dynamic Ecosystems - CANopy), which simulates canopy structure and can be coupled to an atmospheric model using an implicit coupling procedure. We aim to provide a set of acceptable parameter values for a range of forest types. Top-canopy and sub-canopy flux observations from eight sites were collected in order to conduct this evaluation. The sites crossed climate zones from temperate to boreal and the vegetation types included deciduous, evergreen broad-leaved and evergreen needle-leaved forest with a maximum leaf area index (LAI; all-sided) ranging from 3.5 to 7.0. The parametrization approach proposed in this study was based on three selected physical processes - namely the diffusion, advection, and turbulent mixing within the canopy. Short-term sub-canopy observations and long-term surface fluxes were used to calibrate the parameters in the sub-canopy radiation, turbulence, and resistance modules with an automatic tuning process. The multi-layer model was found to capture the dynamics of sub-canopy turbulence, temperature, and energy fluxes. The performance of the new multi-layer model was further compared against the existing single-layer model. Although the multi-layer model simulation results showed few or no improvements to both the nighttime energy balance and energy partitioning during winter compared with a single-layer model simulation, the increased model complexity does provide a more detailed description of the canopy micrometeorology of various forest types. The multi-layer model links to potential future environmental and ecological studies such as the assessment of in-canopy species vulnerability to climate change, the climate effects of disturbance intensities and frequencies, and the consequences of biogenic volatile organic compound (BVOC) emissions from the terrestrial ecosystem.

Investigating the European beech (Fagus sylvatica L.) leaf characteristics along the vertical canopy profile: leaf structure, photosynthetic capacity, light energy dissipation and photoprotection mechanisms.

PubMed

Scartazza, Andrea; Di Baccio, Daniela; Bertolotto, Pierangelo; Gavrichkova, Olga; Matteucci, Giorgio

2016-09-01

Forest functionality and productivity are directly related to canopy light interception and can be affected by potential damage from high irradiance. However, the mechanisms by which leaves adapt to the variable light environments along the multilayer canopy profile are still poorly known. We explored the leaf morphophysiological and metabolic responses to the natural light gradient in a pure European beech (Fagus sylvatica L.) forest at three different canopy heights (top, middle and bottom). Structural adjustment through light-dependent modifications in leaf mass per area was the reason for most of the variations in photosynthetic capacity. The different leaf morphology along the canopy influenced nitrogen (N) partitioning, water- and photosynthetic N-use efficiency, chlorophyll (Chl) fluorescence and quali-quantitative contents of photosynthetic pigments. The Chl a to Chl b ratio and the pool of xanthophyll-cycle pigments (VAZ) increased at the highest irradiance, as well as lutein and β-carotene. The total pool of ascorbate and phenols was higher in leaves of the top and middle canopy layers when compared with the bottom layer, where the ascorbate peroxidase was relatively more activated. The non-photochemical quenching was strongly and positively related to the VAZ/(Chl a + b) ratio, while Chl a/Chl b was related to the photochemical efficiency of photosystem II. Along the multilayer canopy profile, the high energy dissipation capacity of leaves was correlated to an elevated redox potential of antioxidants. The middle layer gave the most relevant contribution to leaf area index and carboxylation capacity of the canopy. In conclusion, a complex interplay among structural, physiological and biochemical traits drives the dynamic leaf acclimation to the natural gradients of variable light environments along the tree canopy profile. The relevant differences observed in leaf traits within the canopy positions of the beech forest should be considered for improving estimation of carbon fluxes in multilayer canopy models of temperate forests. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Numerical Simulation of Parachute Inflation Process by IB Method

NASA Astrophysics Data System (ADS)

Miyoshi, Masaya; Mori, Koichi; Nakamura, Yoshiaki

In the present study the deformation and motion of a parachute in the process of inflation are simulated by applying the immersed boundary technique in a fluid-structure coupling solver. It was found from simulated results that the canopy is first inflated in the normal direction to the uniform flow (in the lateral direction), and then its apex is pulled by a vortex ring generated near the canopy's outer surface due to its negative pressure. After the end of this inflation process, the canopy moves in the tangential direction to the spherical surface, the center of which is located at the payload location. This motion is caused by the breakup of an initial axisymmetric vortex, where many vortices are generated from the shear layer. The predicted maximum parachute opening force is twice as large as the payload force in the steady state, which is in good agreement with experiment.

Sub-Scale Orion Parachute Test Results from the National Full-Scale Aerodynamics Complex 80- By 120-ft Wind Tunnel

NASA Technical Reports Server (NTRS)

Anderson, Brian P.; Greathouse, James S.; Powell, Jessica M.; Ross, James C.; Schairer, Edward T.; Kushner, Laura; Porter, Barry J.; Goulding, Patrick W., II; Zwicker, Matthew L.; Mollmann, Catherine

2017-01-01

A two-week test campaign was conducted in the National Full-Scale Aerodynamics Complex 80 x 120-ft Wind Tunnel in support of Orion parachute pendulum mitigation activities. The test gathered static aerodynamic data using an instrumented, 3-tether system attached to the parachute vent in combination with an instrumented parachute riser. Dynamic data was also gathered by releasing the tether system and measuring canopy performance using photogrammetry. Several canopy configurations were tested and compared against the current Orion parachute design to understand changes in drag performance and aerodynamic stability. These configurations included canopies with varying levels and locations of geometric porosity as well as sails with increased levels of fullness. In total, 37 runs were completed for a total of 392 data points. Immediately after the end of the testing campaign a down-select decision was made based on preliminary data to support follow-on sub-scale air drop testing. A summary of a more rigorous analysis of the test data is also presented.

Discriminating Canopy Structural Types from Optical Properties using AVIRIS Data in the Sierra National Forest in Central California

NASA Astrophysics Data System (ADS)

Huesca Martinez, M.; Garcia, M.; Roth, K. L.; Casas, A.; Ustin, S.

2015-12-01

There is a well-established need within the remote sensing community for improved estimation of canopy structure and understanding of its influence on the retrieval of leaf biochemical properties. The aim of this project was to evaluate the estimation of structural properties directly from hyperspectral data, with the broader goal that these might be used to constrain retrievals of canopy chemistry. We used NASA's Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) to discriminate different canopy structural types, defined in terms of biomass, canopy height and vegetation complexity, and compared them to estimates of these properties measured by LiDAR data. We tested a large number of optical metrics, including single narrow band reflectance and 1st derivative, sub-pixel cover fractions, narrow-band indices, spectral absorption features, and Principal Component Analysis components. Canopy structural types were identified and classified from different forest types by integrating structural traits measured by optical metrics using the Random Forest (RF) classifier. The classification accuracy was above 70% in most of the vegetation scenarios. The best overall accuracy was achieved for hardwood forest (>80% accuracy) and the lowest accuracy was found in mixed forest (~70% accuracy). Furthermore, similarly high accuracy was found when the RF classifier was applied to a spatially independent dataset, showing significant portability for the method used. Results show that all spectral regions played a role in canopy structure assessment, thus the whole spectrum is required. Furthermore, optical metrics derived from AVIRIS proved to be a powerful technique for structural attribute mapping. This research illustrates the potential for using optical properties to distinguish several canopy structural types in different forest types, and these may be used to constrain quantitative measurements of absorbing properties in future research.

Relationship Between Remotely-sensed Vegetation Indices, Canopy Attributes and Plant Physiological Processes: What Vegetation Indices Can and Cannot Tell Us About the Landscape

PubMed Central

Glenn, Edward P.; Huete, Alfredo R.; Nagler, Pamela L.; Nelson, Stephen G.

2008-01-01

Vegetation indices (VIs) are among the oldest tools in remote sensing studies. Although many variations exist, most of them ratio the reflection of light in the red and NIR sections of the spectrum to separate the landscape into water, soil, and vegetation. Theoretical analyses and field studies have shown that VIs are near-linearly related to photosynthetically active radiation absorbed by a plant canopy, and therefore to light-dependent physiological processes, such as photosynthesis, occurring in the upper canopy. Practical studies have used time-series VIs to measure primary production and evapotranspiration, but these are limited in accuracy to that of the data used in ground truthing or calibrating the models used. VIs are also used to estimate a wide variety of other canopy attributes that are used in Soil-Vegetation-Atmosphere Transfer (SVAT), Surface Energy Balance (SEB), and Global Climate Models (GCM). These attributes include fractional vegetation cover, leaf area index, roughness lengths for turbulent transfer, emissivity and albedo. However, VIs often exhibit only moderate, non-linear relationships to these canopy attributes, compromising the accuracy of the models. We use case studies to illustrate the use and misuse of VIs, and argue for using VIs most simply as a measurement of canopy light absorption rather than as a surrogate for detailed features of canopy architecture. Used this way, VIs are compatible with “Big Leaf” SVAT and GCMs that assume that canopy carbon and moisture fluxes have the same relative response to the environment as any single leaf, simplifying the task of modeling complex landscapes. PMID:27879814

Tree leaf trade-offs are stronger for sub-canopy trees: leaf traits reveal little about growth rates in canopy trees.

PubMed

Wills, Jarrah; Herbohn, John; Hu, Jing; Sohel, Shawkat; Baynes, Jack; Firn, Jennifer

2018-06-01

Can morphological plant functional traits predict demographic rates (e.g., growth) within plant communities as diverse as tropical forests? This is one of the most important next-step questions in trait-based ecology and particularly for global reforestation efforts. Due to the diversity of tropical tree species and their longevity, it is difficult to predict their performance prior to reforestation efforts. In this study, we investigate if simple leaf traits are predictors of the more complex ecological process of plant growth in regenerating selectively logged natural forest within the Wet Tropics (WTs) bioregion of Australia. This study used a rich historical data set to quantify tree growth within plots located at Danbulla National Park and State Forest on the Atherton Tableland. Leaf traits were collected from trees that have exhibited fast or slow growth over the last ~50 yr of measurement. Leaf traits were found to be poor predictors of tree growth for trees that have entered the canopy; however, for sub-canopy trees, leaf traits had a stronger association with growth rates. Leaf phosphorus concentrations were the strongest predictor of Periodic Annual Increment (PAI) for trees growing within the sub-canopy, with trees with higher leaf phosphorus levels showing a higher PAI. Sub-canopy tree leaves also exhibited stronger trade-offs between leaf traits and adhere to theoretical predictions more so than for canopy trees. We suggest that, in order for leaf traits to be more applicable to reforestation, size dependence of traits and growth relationships need to be more carefully considered, particularly when reforestation practitioners assign mean trait values to tropical tree species from multiple canopy strata. © 2018 by the Ecological Society of America.

Exploring Relationships between Canopy Architecture, Light Distribution, and Photosynthesis in Contrasting Rice Genotypes Using 3D Canopy Reconstruction

PubMed Central

Burgess, Alexandra J.; Retkute, Renata; Herman, Tiara; Murchie, Erik H.

2017-01-01

The arrangement of leaf material is critical in determining the light environment, and subsequently the photosynthetic productivity of complex crop canopies. However, links between specific canopy architectural traits and photosynthetic productivity across a wide genetic background are poorly understood for field grown crops. The architecture of five genetically diverse rice varieties—four parental founders of a multi-parent advanced generation intercross (MAGIC) population plus a high yielding Philippine variety (IR64)—was captured at two different growth stages using a method for digital plant reconstruction based on stereocameras. Ray tracing was employed to explore the effects of canopy architecture on the resulting light environment in high-resolution, whilst gas exchange measurements were combined with an empirical model of photosynthesis to calculate an estimated carbon gain and total light interception. To further test the impact of different dynamic light patterns on photosynthetic properties, an empirical model of photosynthetic acclimation was employed to predict the optimal light-saturated photosynthesis rate (Pmax) throughout canopy depth, hypothesizing that light is the sole determinant of productivity in these conditions. First, we show that a plant type with steeper leaf angles allows more efficient penetration of light into lower canopy layers and this, in turn, leads to a greater photosynthetic potential. Second the predicted optimal Pmax responds in a manner that is consistent with fractional interception and leaf area index across this germplasm. However, measured Pmax, especially in lower layers, was consistently higher than the optimal Pmax indicating factors other than light determine photosynthesis profiles. Lastly, varieties with more upright architecture exhibit higher maximum quantum yield of photosynthesis indicating a canopy-level impact on photosynthetic efficiency. PMID:28567045

Parameterization and sensitivity analyses of a radiative transfer model for remote sensing plant canopies

NASA Astrophysics Data System (ADS)

Hall, Carlton Raden

A major objective of remote sensing is determination of biochemical and biophysical characteristics of plant canopies utilizing high spectral resolution sensors. Canopy reflectance signatures are dependent on absorption and scattering processes of the leaf, canopy properties, and the ground beneath the canopy. This research investigates, through field and laboratory data collection, and computer model parameterization and simulations, the relationships between leaf optical properties, canopy biophysical features, and the nadir viewed above-canopy reflectance signature. Emphasis is placed on parameterization and application of an existing irradiance radiative transfer model developed for aquatic systems. Data and model analyses provide knowledge on the relative importance of leaves and canopy biophysical features in estimating the diffuse absorption a(lambda,m-1), diffuse backscatter b(lambda,m-1), beam attenuation alpha(lambda,m-1), and beam to diffuse conversion c(lambda,m-1 ) coefficients of the two-flow irradiance model. Data sets include field and laboratory measurements from three plant species, live oak (Quercus virginiana), Brazilian pepper (Schinus terebinthifolius) and grapefruit (Citrus paradisi) sampled on Cape Canaveral Air Force Station and Kennedy Space Center Florida in March and April of 1997. Features measured were depth h (m), projected foliage coverage PFC, leaf area index LAI, and zenith leaf angle. Optical measurements, collected with a Spectron SE 590 high sensitivity narrow bandwidth spectrograph, included above canopy reflectance, internal canopy transmittance and reflectance and bottom reflectance. Leaf samples were returned to laboratory where optical and physical and chemical measurements of leaf thickness, leaf area, leaf moisture and pigment content were made. A new term, the leaf volume correction index LVCI was developed and demonstrated in support of model coefficient parameterization. The LVCI is based on angle adjusted leaf thickness Ltadj, LAI, and h (m). Its function is to translate leaf level estimates of diffuse absorption and backscatter to the canopy scale allowing the leaf optical properties to directly influence above canopy estimates of reflectance. The model was successfully modified and parameterized to operate in a canopy scale and a leaf scale mode. Canopy scale model simulations produced the best results. Simulations based on leaf derived coefficients produced calculated above canopy reflectance errors of 15% to 18%. A comprehensive sensitivity analyses indicated the most important parameters were beam to diffuse conversion c(lambda, m-1), diffuse absorption a(lambda, m-1), diffuse backscatter b(lambda, m-1), h (m), Q, and direct and diffuse irradiance. Sources of error include the estimation procedure for the direct beam to diffuse conversion and attenuation coefficients and other field and laboratory measurement and analysis errors. Applications of the model include creation of synthetic reflectance data sets for remote sensing algorithm development, simulations of stress and drought on vegetation reflectance signatures, and the potential to estimate leaf moisture and chemical status.

Morton et al. Reply

NASA Technical Reports Server (NTRS)

Morton, Douglas C.; Nagol, Jyoteshwar; Carabajal, Claudia C.; Rosette, Jacqueline; Palace, Michael; Cook, Bruce D.; Vermote, Eric F.; Harding, David J.; North, Peter R. J.

2016-01-01

Multiple mechanisms could lead to up-regulation of dry-season photosynthesis in Amazon forests, including canopy phenology and illumination geometry. We specifically tested two mechanisms for phenology-driven changes in Amazon forests during dry-season months, and the combined evidence from passive optical and lidar satellite data was incompatible with large net changes in canopy leaf area or leaf reflectance suggested by previous studies. We therefore hypothesized that seasonal changes in the fraction of sunlit and shaded canopies, one aspect of bidirectional reflectance effects in Moderate Resolution Imaging Spectroradiometer (MODIS) data, could alter light availability for dry-season photosynthesis and the photosynthetic capacity of Amazon forests without large net changes in canopy composition. Subsequent work supports the hypothesis that seasonal changes in illumination geometry and diffuse light regulate light saturation in Amazon forests. These studies clarify the physical mechanisms that govern light availability in Amazon forests from seasonal variability in direct and diffuse illumination. Previously, in the debate over light limitation of Amazon forest productivity, seasonal changes in the distribution of light within complex Amazon forest canopies were confounded with dry-season increases in total incoming photosynthetically active radiation. In the accompanying Comment, Saleska et al. do not fully account for this confounding effect of forest structure on photosynthetic capacity.

Integration of airborne LiDAR data and voxel-based ray tracing to determine high-resolution solar radiation dynamics at the forest floor: implications for improving stand-scale distributed snowmelt models

NASA Astrophysics Data System (ADS)

Musselman, K. N.; Molotch, N. P.; Margulis, S. A.

2012-12-01

Forest architecture dictates sub-canopy solar irradiance and the resulting patterns can vary seasonally and over short spatial distances. These radiation dynamics are thought to have significant implications on snowmelt processes, regional hydrology, and remote sensing signatures. The variability calls into question many assumptions inherent in traditional canopy models (e.g. Beer's Law) when applied at high resolution (i.e. 1 m). We present a method of estimating solar canopy transmissivity using airborne LiDAR data. The canopy structure is represented in 3-D voxel space (i.e. a cubic discretization of a 3-D domain analogous to a pixel representation of a 2-D space). The solar direct beam canopy transmissivity (DBT) is estimated with a ray-tracing algorithm and the diffuse component is estimated from LiDAR-derived effective LAI. Results from one year at five-minute temporal and 1 m spatial resolutions are presented from Sequoia National Park. Compared to estimates from 28 hemispherical photos, the ray-tracing model estimated daily mean DBT with a 10% average error, while the errors from a Beer's-type DBT estimate exceeded 20%. Compared to the ray-tracing estimates, the Beer's-type transmissivity method was unable to resolve complex spatial patterns resulting from canopy gaps, individual tree canopies and boles, and steep variable terrain. The snowmelt model SNOWPACK was applied at locations of ultrasonic snow depth sensors. Two scenarios were tested; 1) a nominal case where canopy model parameters were obtained from hemispherical photographs, and 2) an explicit scenario where the model was modified to accept LiDAR-derived time-variant DBT. The bulk canopy treatment was generally unable to simulate the sub-canopy snowmelt dynamics observed at the depth sensor locations. The explicit treatment reduced error in the snow disappearance date by one week and both positive and negative melt-season SWE biases were reduced. The results highlight the utility of LiDAR canopy measurements and physically based snowmelt models to simulate spatially distributed stand- and slope-scale snowmelt dynamics at resolutions necessary to capture the inherent underlying variability.iDAR-derived solar direct beam canopy transmissivity computed as the daily average for March 1st and May 1st.

Characterizing stand-level forest canopy cover and height using Landsat time series, samples of airborne LiDAR, and the Random Forest algorithm

NASA Astrophysics Data System (ADS)

Ahmed, Oumer S.; Franklin, Steven E.; Wulder, Michael A.; White, Joanne C.

2015-03-01

Many forest management activities, including the development of forest inventories, require spatially detailed forest canopy cover and height data. Among the various remote sensing technologies, LiDAR (Light Detection and Ranging) offers the most accurate and consistent means for obtaining reliable canopy structure measurements. A potential solution to reduce the cost of LiDAR data, is to integrate transects (samples) of LiDAR data with frequently acquired and spatially comprehensive optical remotely sensed data. Although multiple regression is commonly used for such modeling, often it does not fully capture the complex relationships between forest structure variables. This study investigates the potential of Random Forest (RF), a machine learning technique, to estimate LiDAR measured canopy structure using a time series of Landsat imagery. The study is implemented over a 2600 ha area of industrially managed coastal temperate forests on Vancouver Island, British Columbia, Canada. We implemented a trajectory-based approach to time series analysis that generates time since disturbance (TSD) and disturbance intensity information for each pixel and we used this information to stratify the forest land base into two strata: mature forests and young forests. Canopy cover and height for three forest classes (i.e. mature, young and mature and young (combined)) were modeled separately using multiple regression and Random Forest (RF) techniques. For all forest classes, the RF models provided improved estimates relative to the multiple regression models. The lowest validation error was obtained for the mature forest strata in a RF model (R2 = 0.88, RMSE = 2.39 m and bias = -0.16 for canopy height; R2 = 0.72, RMSE = 0.068% and bias = -0.0049 for canopy cover). This study demonstrates the value of using disturbance and successional history to inform estimates of canopy structure and obtain improved estimates of forest canopy cover and height using the RF algorithm.

Diurnal Patterns of Direct Light Extinction in Two Tropical Forest Canopies

NASA Astrophysics Data System (ADS)

Cushman, K.; Silva, C. E.; Kellner, J. R.

2016-12-01

The extent to which net ecosystem production is light-limited in Neotropical forests is poorly understood. This is due in part to our limited knowledge of how light moves through complex canopies to different layers of leaves, and the extent to which structural changes in canopies modify the amount of light absorbed by the landscape to drive photosynthesis. Systematic diurnal changes in solar angle, leaf angle, and wind speed suggest that patterns of light attenuation change over the course of the day in tropical forests. In this study, we characterize the extinction of direct light through the canopies of two forests in Panama using high-resolution, three-dimensional measurements from a small footprint, discrete return airborne laser scanner mounted on the gondola of a canopy crane. We hypothesized that light penetrates deeper into canopies during the middle of the day because changes in leaf angle by light-saturated leaves temporarily reduce effective canopy leaf area, and because greater wind speeds increase sunflecks. Also, we hypothesized that rates of light extinction are greater in the wetter forest that receives less direct sunlight because light saturation in upper leaves is less prevalent. We collected laser measurements with resolution of approximately 5,000 points per square meter of ground every 90 minutes over the course of one day each at Parque Natural Metropolitano (1740 mm annual rainfall) and Parque Nacional San Lorenzo (3300 mm annual rainfall) during the dry season in April, 2016. Using a voxel-based approach, we compared the actual versus potential distance traveled by laser beams through each volume of the canopy. We fit an exponential model to quantify the rate of light extinction. We found that rates of light extinction vary spatially, temporally, and by site. These results indicate that variation in forest structure changes patterns of light attenuation through the canopy over multiple scales.

Sustained diurnal photosynthetic depression in uppermost-canopy leaves of four dipterocarp species in the rainy and dry seasons: does photorespiration play a role in photoprotection?

PubMed

Zhang, J-L; Meng, L-Z; Cao, K-F

2009-02-01

Diurnal and seasonal changes in gas exchange and chlorophyll fluorescence of the uppermost-canopy leaves of four evergreen dipterocarp species were measured on clear days. The trees, that were growing in a plantation stand in southern Yunnan, China, had canopy heights ranging from 17 to 22 m. In the rainy season, Dipterocarpus retusus Bl. had higher photosynthetic capacity (A(max)) than Hopea hainanensis Merr. et Chun, Parashorea chinensis Wang Hsie and Vatica xishuangbannaensis G.D. Tao et J.H. Zhang (17.7 versus 13.9, 11.8 and 7.7 micromol m(-2) s(-1), respectively). In the dry season, A(max) in all species decreased by 52-64%, apparent quantum yield and dark respiration rate decreased in three species, and light saturation point decreased in two species. During the diurnal courses, all species exhibited sustained photosynthetic depression from midmorning onward in both seasons. The trees were able to regulate light energy allocation dynamically between photochemistry and heat dissipation during the day, with reduced actual photochemistry and increased heat dissipation in the dry season. Photorespiration played an important role in photoprotection in all species in both seasons, as indicated by a continuous increase in photorespiration rate in the morning toward midday and a high proportion of electron flow (about 30-65% of total electron flow) allocated to oxygenation for most of the day. None of the species suffered irreversible photoinhibition, even in the dry season. The sustained photosynthetic depression in the uppermost-canopy leaves of these species could be a protective response to prevent excessive water loss and consequent catastrophic leaf hydraulic dysfunction.

Seasonal and interannual variability of canopy transpiration of a hedgerow in southern England.

PubMed

Herbst, Mathias; Roberts, John M; Rosier, Paul T W; Gowing, David J

2007-03-01

Transpiration from a hawthorn (Crataegus monogyna L.) dominated hedgerow in southern England was measured continuously over two growing seasons by the sap flow technique. Accompanying measurements of structural parameters, microclimate and leaf stomatal and boundary layer conductances were used to establish the driving factors of hedgerow transpiration. Observed transpiration rates, reaching peak values of around 8 mm day(-1) and a seasonal mean of about 3.5 mm day(-1), were higher than those reported for most other temperate deciduous woodlands, except short-rotation coppice and wet woodlands. The high rates were caused by the structural and physiological characteristics of hawthorn leaves, which exhibited much higher stomatal and boundary-layer conductances than those of the second-most abundant woody species in the hedgerow, field maple (Acer campestre L.). Only in the hot summer of 2003 did stomatal conductance, and thus transpiration, decrease substantially. The hedgerow canopy was always closely coupled to the atmosphere. Hedgerow transpiration equaled potential evaporation (calculated by the Priestley-Taylor formula) in 2003 and exceeded it in 2004, which meant that a substantial fraction of the energy (21% in 2003 and more than 37% in 2004) came from advection. Hedgerow canopy conductance (g(c)), as inferred from the sap flow data by inverting the Penman-Monteith equation, responded to solar radiation (R(G)) and vapor pressure deficit (D). Although the response to R(G) showed no systematic temporal variation, the response to D, described as g(c)(D) = g(cref) - mln(D), changed seasonally. The reference g(c) depended on leaf area index and the ratio of -m/g(cref) on long-term mean daytime D. A model is proposed based on these observations that predicts canopy conductance for the hawthorn hedge from standard weather data.

The water balance components of Mediterranean pine trees on a steep mountain slope during two hydrologically contrasting years

NASA Astrophysics Data System (ADS)

Eliades, Marinos; Bruggeman, Adriana; Lubczynski, Maciek W.; Christou, Andreas; Camera, Corrado; Djuma, Hakan

2018-07-01

Pines in semi-arid mountain environments manage to survive and thrive despite the limited soil water, due to shallow soil depths, and overall water scarcity. This study aims to develop a method for computing soil evaporation, bedrock water uptake and transpiration from a natural, open forest, based on sap flow (Heat Ratio Method), soil moisture and meteorological observations. The water balance of individual trees was conceptualized with a geometric approach, using canopy projected areas and Voronoi (Thiesen) polygons. The canopy approach assumes that the tree's root area extent is equal to its canopy projected area, while the Voronoi approach assumes that the tree roots exploit the open area that is closer to the tree than to any other tree. The methodology was applied in an open Pinus brutia forest (68% canopy cover) in Cyprus, characterized by steep slopes and fractured bedrock, during two hydrologically contrasting years (2015 wet, 2016 dry). Sap flow sensors, soil moisture sensors, throughfall and stemflow gauges were installed on and around eight trees. Rainfall was 507 mm in 2015 and 359 mm in 2016. According to the canopy approach, the sum of tree transpiration and soil evaporation exceeded the throughfall in both years, which implies that the trees' bedrock water uptake exceeds the surface runoff and drainage losses. This indicated that trees extend their roots beyond the canopy-projected areas and the use of the Voronoi polygons captures this effect. According to the stand scale water balance, average throughfall during the two years was 81% of the rainfall. Transpiration was 61% of the rainfall in 2015, but only 32% in 2016. On the contrary, the soil evaporation fraction increased from 26% in 2015 to 35% in the dry year of 2016. The contribution of bedrock water to tree transpiration was 77% of rainfall in 2015 and 66% in 2016. During the summer months, trees relied 100% on the uptake of water from the fractured bedrock to cover their transpiration needs. Average monthly transpiration areas ranged between 0.1 mm d-1 in October 2016 and 1.7 mm d-1 in April 2015. This study shows that bedrock uptake could be an essential water balance component of semi-arid, mountainous pine forests and should be accounted for in hydrologic models.

A data-led comparison of simple canopy radiative transfer models for the boreal forest

NASA Astrophysics Data System (ADS)

Reid, T.; Essery, R.; Rutter, N.; King, M.

2012-12-01

Given the computational complexity of numerical weather and climate models, it is worthwhile developing very simple parameterizations for processes such as the transmission of radiation through forest canopies. For this reason, the land surface schemes in global models, and most snow hydrological models, tend to use simple one-dimensional approaches based on Beer's Law or two-stream approximations. Such approaches assume a continuous canopy structure that may not be suitable for the varied, heterogeneous forest cover in boreal regions, especially in winter when snow in the canopy and on the ground may either block radiation or produce multiple reflections between the ground and the trees. There is great benefit in comparing models to real transmissivity values calculated from radiation measurements below and above Arctic canopies. In particular, there is a lack of data for leafless boreal deciduous forests, where canopy gaps are prevalent even at low solar elevation angles near the horizon. In this study, models are compared to radiation data collected in an area of boreal birch forest near Abisko, Sweden in March/April 2011 and mixed conifer forest at Sodankylä, Finland in March/April 2012. Arrays comprising ten shortwave pyranometers were deployed for periods of up to 50 days, under forest plots of varying canopy structures and densities. In addition, global and diffuse shortwave irradiances were recorded at nearby open sites representing the top-of-canopy conditions. A model is developed that explicitly accounts for both diffuse radiation and direct beam transmission on a 5-minute timestep, by using upward-looking hemispherical photographs taken from every pyranometer site. This model reproduces measured transmissivity, although with a slight underestimation, especially at low solar elevations - this could be attributed to multiple reflections that are not accounted for in the model. On the other hand, models based on Beer's Law tend to underestimate the canopy transmissivity significantly, especially for leafless birch canopies where the required assumption of a continuous canopy breaks down. These findings are important for the often sparse, heterogeneous forest cover in boreal regions, where forest edges and canopy gaps are plentiful. They could also have an impact on estimations of overall land surface albedo. Moreover, all models are sensitive to the partitioning of top-of-canopy radiation into its direct and diffuse components, which is complicated by the low solar elevations in the Arctic. More research is required to decide the best way of quantifying the diffuse fraction, using data alongside both physical and empirical models.

High temporal resolution tracing of up-and downward carbon transport in oak trees

NASA Astrophysics Data System (ADS)

Bloemen, Jasper; Ingrisch, Johannes; Bahn, Michael

2017-04-01

Carbon (C) allocation defines the flows of C between plant organs and their storage pools and metabolic processes and is therefore considered as an important determinant of forest C budgets and their responses to climate change. In trees, assimilates derived from leaf photosynthesis are transported via the phloem to above- and belowground sink tissues, where partitioning between growth, storage, and respiration occurs. At the same time, root- and aboveground respired CO2 can be dissolved in water and transported in the xylem tissue, thereby representing a secondary C flux of large magnitude. The relative magnitude of both fluxes in a same set of trees and their concurrent role in C allocation remains unclear. In this study, we 13C pulse labeled five year old potted oak (Quercus rubra) trees to investigate both the role of C transport via the phloem and xylem in C allocation. To this end trees were randomly assigned to two 13C labeling experiments: 1) a canopy labeling experiment using transparent canopy chambers and 2) a stem labeling experiment based on the infusion of 13C labeled water in the stem base. We used high-resolution laser-based measurements of the isotopic composition of stem and soil CO2 efflux to monitor both the down-and upward transport of 13C label. Additional tissue samples at stem, canopy and root level were analyzed to validate the assimilation of the label in tree tissues during transport. Overall, after both labeling experiments enrichment was observed in both stem and soil CO2 efflux, showing that the 13C label was removed from both xylem and phloem transport during up- and downward transport, respectively. Higher enrichments of CO2 efflux were observed after stem labeling as compared to canopy labeling, which implies that xylem transport strongly contributes to C lost to the atmosphere. This study is the first to show combined results from tracing of xylem and phloem transport of C for a same set of trees at high temporal resolution using a 13C labeling approach. Moreover, they extend results from previous studies on the tracing of phloem transport in trees to a tracing of both xylem and canopy transport as well as results from studies on the internal CO2 transport in species with high transpiration rates like poplar to species with lower transpiration rates like oak. The results further demonstrate the complex interplay of phloem and xylem transport of carbon and its role for the emission of respired CO2 from trees into the atmosphere.

Direct uptake of canopy rainwater causes turgor-driven growth spurts in the mangrove Avicennia marina.

PubMed

Steppe, Kathy; Vandegehuchte, Maurits W; Van de Wal, Bart A E; Hoste, Pieter; Guyot, Adrien; Lovelock, Catherine E; Lockington, David A

2018-03-17

Mangrove forests depend on a dense structure of sufficiently large trees to fulfil their essential functions as providers of food and wood for animals and people, CO2 sinks and protection from storms. Growth of these forests is known to be dependent on the salinity of soil water, but the influence of foliar uptake of rainwater as a freshwater source, additional to soil water, has hardly been investigated. Under field conditions in Australia, stem diameter variation, sap flow and stem water potential of the grey mangrove (Avicennia marina (Forssk.) Vierh.) were simultaneously measured during alternating dry and rainy periods. We found that sap flow in A. marina was reversed, from canopy to roots, during and shortly after rainfall events. Simultaneously, stem diameters rapidly increased with growth rates up to 70 μm h-1, which is about 25-75 times the normal growth rate reported in temperate trees. A mechanistic tree model was applied to provide evidence that A. marina trees take up water through their leaves, and that this water contributes to turgor-driven stem growth. Our results indicate that direct uptake of freshwater by the canopy during rainfall supports mangrove tree growth and serve as a call to consider this water uptake pathway if we aspire to correctly assess influences of changing rainfall patterns on mangrove tree growth.

Web-FACE: a new canopy free-air CO2 enrichment system for tall trees in mature forests.

PubMed

Pepin, Steeve; Körner, Christian

2002-09-01

The long-term responses of forests to atmospheric CO2 enrichment have been difficult to determine experimentally given the large scale and complex structure of their canopy. We have developed a CO2 exposure system that uses the free-air CO2 enrichment (FACE) approach but was designed for tall canopy trees. The system consists of a CO2-release system installed within the crown of adult trees using a 45-m tower crane, a CO2 monitoring system and an automated regulation system. Pure CO2 gas is released from a network of small tubes woven into the forest canopy (web-FACE), and CO2 is emitted from small laser-punched holes. The set point CO2 concentration ([CO2]) of 500 µmol mol(-1) is controlled by a pulse-width modulation routine that adjusts the rate of CO2 injection as a function of measured [CO2] in the canopy. CO2 consumption for the enrichment of 14 tall canopy trees was about 2 tons per day over the whole growing season. The seasonal daytime mean CO2 concentration was 520 µmol mol(-1). One-minute averages of CO2 measurements conducted at canopy height in the center of the CO2-enriched zone were within ±20% and ±10% of the target concentration for 76% and 47% of the exposure time, respectively. Despite the size of the canopy and the windy site conditions, performance values correspond to about 75% of that reported for conventional forest FACE with the added advantage of a much simpler and less intrusive infrastructure. Stable carbon isotope signals captured by 80 Bermuda grass (Cynodon dactylon) seedlings distributed within the canopy of treated and control tree districts showed a clearly delineated area, with some nearby individuals having been exposed to a gradient of [CO2], which is seen as added value. Time-integrated values of [CO2] derived from the C isotope composition of C. dactylon leaves indicated a mean (±SD) concentration of 513±63 µmol mol(-1) in the web-FACE canopy area. In view of the size of the forest and the rough natural canopy, web-FACE is a most promising avenue towards natural forest experiments, which are greatly needed.

Modelisation de l'architecture des forets pour ameliorer la teledetection des attributs forestiers

NASA Astrophysics Data System (ADS)

Cote, Jean-Francois

The quality of indirect measurements of canopy structure, from in situ and satellite remote sensing, is based on knowledge of vegetation canopy architecture. Technological advances in ground-based, airborne or satellite remote sensing can now significantly improve the effectiveness of measurement programs on forest resources. The structure of vegetation canopy describes the position, orientation, size and shape of elements of the canopy. The complexity of the canopy in forest environments greatly limits our ability to characterize forest structural attributes. Architectural models have been developed to help the interpretation of canopy structural measurements by remote sensing. Recently, the terrestrial LiDAR systems, or TLiDAR (Terrestrial Light Detection and Ranging), are used to gather information on the structure of individual trees or forest stands. The TLiDAR allows the extraction of 3D structural information under the canopy at the centimetre scale. The methodology proposed in my Ph.D. thesis is a strategy to overcome the weakness in the structural sampling of vegetation cover. The main objective of the Ph.D. is to develop an architectural model of vegetation canopy, called L-Architect (LiDAR data to vegetation Architecture), and to focus on the ability to document forest sites and to get information on canopy structure from remote sensing tools. Specifically, L-Architect reconstructs the architecture of individual conifer trees from TLiDAR data. Quantitative evaluation of L-Architect consisted to investigate (i) the structural consistency of the reconstructed trees and (ii) the radiative coherence by the inclusion of reconstructed trees in a 3D radiative transfer model. Then, a methodology was developed to quasi-automatically reconstruct the structure of individual trees from an optimization algorithm using TLiDAR data and allometric relationships. L-Architect thus provides an explicit link between the range measurements of TLiDAR and structural attributes of individual trees. L-Architect has finally been applied to model the architecture of forest canopy for better characterization of vertical and horizontal structure with airborne LiDAR data. This project provides a mean to answer requests of detailed canopy architectural data, difficult to obtain, to reproduce a variety of forest covers. Because of the importance of architectural models, L-Architect provides a significant contribution for improving the capacity of parameters' inversion in vegetation cover for optical and lidar remote sensing. Mots-cles: modelisation architecturale, lidar terrestre, couvert forestier, parametres structuraux, teledetection.

STEMFLOW CONTRIBUTIONS TO THE "FERTILE ISLAND" EFFECT IN CREOSOTEBUSH, LARREA TRIDENTATA

EPA Science Inventory

The frequency of creosotebushes with inverted cone canopies is greatest in environments which are more water-limited. Hemispherical shaped creosotebushes are more abundant in less water limited environments. In ecosystems where overland flow of water exerts a greater influence ...

Using Remote Sensing Technologies to Quantify the Effects of Beech Bark Disease on the Structure, Composition, and Function of a Late-Successional Forest

NASA Astrophysics Data System (ADS)

Stuart-Haëntjens, E. J.; Ricart, R. D.; Fahey, R. T.; Fotis, A. T.; Gough, C. M.

2016-12-01

Ecological theory maintains that as forests age, the rate at which carbon (C) is stored declines because C released through organic matter decomposition offsets declining C sequestration in new vegetative growth. Recent observational studies are challenging this long-held hypothesis, with limited evidence suggesting higher-than-expected rates in late-successional forests could be, counterintuitively, tied to canopy structural changes associated with low intensity tree mortality. As forests age, canopy structural complexity may increase when old trees die and form upper canopy gaps that release subcanopy vegetation. This provides one explanation for observations of sustained high production in old forests. Recent studies have found that this increased structural complexity and resource-use efficiency maintain C storage in mid-successional deciduous forests; whether a similar mechanism extends to late-successional forests is unknown. We will present how a slow, moderate disturbance affects the structure and C sequestration of late-successional forests. Our study site is a forest recently infected by Beech Bark Disease (BBD), which will result in the eventual mortality of American beech trees in this late successional forest in Northern Michigan, at the University of Michigan Biological Station. American Beech, Hemlock, Sugar Maple, and White Pine dominate the landscape, with American Beech making up 30% of the canopy trees on average. At the plot scale American Beech is distributed heterogeneously, comprising 1% to 60% of total plot basal area, making it possible to examine the interplay between disturbance severity, canopy structural change, and primary production resilience in this forest. Within each of the 13 plots, species and stem diameter were collected in 1992, 1994, 2014, and 2016, with future remeasurements planned. We will discuss how ground-based lidar coupled with airborne spectral (IR and RGB) imagery are being used to track canopy BBD-related structural changes over time and space, and to link structural changes with late-successional primary production. Our hypothesis is that, up to a presently unknown disturbance threshold, moderate disturbance from BBD sustains primary production in this late successional forest by partially, but not fully, rewinding ecological succession.

Pollutant Dispersion in Boundary Layers Exposed to Rural-to-Urban Transitions: Varying the Spanwise Length Scale of the Roughness

NASA Astrophysics Data System (ADS)

Tomas, J. M.; Eisma, H. E.; Pourquie, M. J. B. M.; Elsinga, G. E.; Jonker, H. J. J.; Westerweel, J.

2017-05-01

Both large-eddy simulations (LES) and water-tunnel experiments, using simultaneous stereoscopic particle image velocimetry and laser-induced fluorescence, have been used to investigate pollutant dispersion mechanisms in regions where the surface changes from rural to urban roughness. The urban roughness was characterized by an array of rectangular obstacles in an in-line arrangement. The streamwise length scale of the roughness was kept constant, while the spanwise length scale was varied by varying the obstacle aspect ratio l / h between 1 and 8, where l is the spanwise dimension of the obstacles and h is the height of the obstacles. Additionally, the case of two-dimensional roughness (riblets) was considered in LES. A smooth-wall turbulent boundary layer of depth 10 h was used as the approaching flow, and a line source of passive tracer was placed 2 h upstream of the urban canopy. The experimental and numerical results show good agreement, while minor discrepancies are readily explained. It is found that for l/h=2 the drag induced by the urban canopy is largest of all considered cases, and is caused by a large-scale secondary flow. In addition, due to the roughness transition the vertical advective pollutant flux is the main ventilation mechanism in the first three streets. Furthermore, by means of linear stochastic estimation the mean flow structure is identified that is responsible for street-canyon ventilation for the sixth street and onwards. Moreover, it is shown that the vertical length scale of this structure increases with increasing aspect ratio of the obstacles in the canopy, while the streamwise length scale does not show a similar trend.

Mapping Urban Tree Canopy Cover Using Fused Airborne LIDAR and Satellite Imagery Data

NASA Astrophysics Data System (ADS)

Parmehr, Ebadat G.; Amati, Marco; Fraser, Clive S.

2016-06-01

Urban green spaces, particularly urban trees, play a key role in enhancing the liveability of cities. The availability of accurate and up-to-date maps of tree canopy cover is important for sustainable development of urban green spaces. LiDAR point clouds are widely used for the mapping of buildings and trees, and several LiDAR point cloud classification techniques have been proposed for automatic mapping. However, the effectiveness of point cloud classification techniques for automated tree extraction from LiDAR data can be impacted to the point of failure by the complexity of tree canopy shapes in urban areas. Multispectral imagery, which provides complementary information to LiDAR data, can improve point cloud classification quality. This paper proposes a reliable method for the extraction of tree canopy cover from fused LiDAR point cloud and multispectral satellite imagery data. The proposed method initially associates each LiDAR point with spectral information from the co-registered satellite imagery data. It calculates the normalised difference vegetation index (NDVI) value for each LiDAR point and corrects tree points which have been misclassified as buildings. Then, region growing of tree points, taking the NDVI value into account, is applied. Finally, the LiDAR points classified as tree points are utilised to generate a canopy cover map. The performance of the proposed tree canopy cover mapping method is experimentally evaluated on a data set of airborne LiDAR and WorldView 2 imagery covering a suburb in Melbourne, Australia.

Modeling coupled interactions of carbon, water, and ozone exchange between terrestrial ecosystems and the atmosphere. I: model description.

PubMed

Nikolov, Ned; Zeller, Karl F

2003-01-01

A new biophysical model (FORFLUX) is presented to study the simultaneous exchange of ozone, carbon dioxide, and water vapor between terrestrial ecosystems and the atmosphere. The model mechanistically couples all major processes controlling ecosystem flows trace gases and water implementing recent concepts in plant eco-physiology, micrometeorology, and soil hydrology. FORFLUX consists of four interconnected modules-a leaf photosynthesis model, a canopy flux model, a soil heat-, water- and CO2- transport model, and a snow pack model. Photosynthesis, water-vapor flux and ozone uptake at the leaf level are computed by the LEAFC3 sub-model. The canopy module scales leaf responses to a stand level by numerical integration of the LEAFC3model over canopy leaf area index (LAI). The integration takes into account (1) radiative transfer inside the canopy, (2) variation of foliage photosynthetic capacity with canopy depth, (3) wind speed attenuation throughout the canopy, and (4) rainfall interception by foliage elements. The soil module uses principles of the diffusion theory to predict temperature and moisture dynamics within the soil column, evaporation, and CO2 efflux from soil. The effect of soil heterogeneity on field-scale fluxes is simulated employing the Bresler-Dagan stochastic concept. The accumulation and melt of snow on the ground is predicted using an explicit energy balance approach. Ozone deposition is modeled as a sum of three fluxes- ozone uptake via plant stomata, deposition to non-transpiring plant surfaces, and ozone flux into the ground. All biophysical interactions are computed hourly while model projections are made at either hourly or daily time step. FORFLUX represents a comprehensive approach to studying ozone deposition and its link to carbon and water cycles in terrestrial ecosystems.

Diversity of Bats in Contrasting Habitats of Hulu Terengganu Dipterocarp Forest and Setiu Wetland BRIS Forest with a Note on Preliminary Study of Vertical Stratification of Pteropodid Bats.

PubMed

Pounsin, Grace; Wahab, Nur Syahirah; Roslan, Azuan; Zahidin, Muhamad Aidil; Pesiu, Elizabeth; Tamrin, Nur Aida Md; Abdullah, M T

2018-03-01

A study of the bat diversity was conducted in Hulu Terengganu dipterocarp forest and Setiu Wetland Beach Ridges Interspersed with Swales (BRIS) forest in Terengganu, to study the species diversity, composition and stratification of fruit bats from the understorey to the forest canopy. Mist nets were set up at the understorey, sub-canopy and canopy layer while harp traps were set up at the understorey layer. We recorded 170 individuals from six families' compromised 21 species from Hulu Terengganu dipterocarp forests and four species from Setiu Wetland BRIS forests throughout the sampling period. Megaerops ecaudatus and Cynopterus brachyotis were the most dominant species in Hulu Terengganu dipterocarp forest and Setiu Wetland BRIS forests. Our study also recorded two species with new distributional records for the east coast of Peninsular Malaysia, namely, Rhinolophus chiewkweeae and Chaerephon johorensis in Hulu Terengganu dipterocarp forests. Potential factors that might influence the results were in terms of the canopy covers, the structural complexity of canopy, food availability and spatial characteristics. This study was able to increase the knowledge on the species diversity and composition of bats in Hulu Terengganu dipterocarp forest and Setiu Wetland BRIS forest, thus, further aid in the effort of bat conservation in both areas.

Modeling Diurnal and Seasonal 3D Light Profiles in Amazon Forests

NASA Astrophysics Data System (ADS)

Morton, D. C.; Rubio, J.; Gastellu-Etchegorry, J.; Cook, B. D.; Hunter, M. O.; Yin, T.; Nagol, J. R.; Keller, M. M.

2013-12-01

The complex horizontal and vertical structure in tropical forests generates a diversity of light environments for canopy and understory trees. These 3D light profiles are dynamic on diurnal and seasonal time scales based on changes in solar illumination and the fraction of diffuse light. Understanding this variability is critical for improving ecosystem models and interpreting optical and LiDAR remote sensing data from tropical forests. Here, we initialized the Discrete Anisotropic Radiative Transfer (DART) model using dense airborne LiDAR data (>20 returns m2) from three forest sites in the central and eastern Amazon. Forest scenes derived from airborne LiDAR data were tested using modeled and observed large-footprint LiDAR data from the ICESat-GLAS sensor. Next, diurnal and seasonal profiles of photosynthetically active radiation (PAR) for each forest site were simulated under clear sky and cloudy conditions using DART. Incident PAR was summarized for canopy, understory, and ground levels. Our study illustrates the importance of realistic canopy models for accurate representation of LiDAR and optical radiative transfer. In particular, canopy rugosity and ground topography information from airborne LiDAR data provided critical 3D information that cannot be recreated using stem maps and allometric relationships for crown dimensions. The spatial arrangement of canopy trees altered PAR availability, even for dominant individuals, compared to downwelling measurements from nearby eddy flux towers. Pseudo-realistic branch and leaf architecture was also essential for recreating multiple scattering within canopies at near-infrared wavelengths commonly used for LiDAR remote sensing and quantifying PAR attenuation from shading within and between canopies. These findings point to the need for more spatial information on forest structure to improve the representation of light availability in models of tropical forest productivity.

Supersonic Testing of 0.8 m Disk Gap Band Parachutes in the Wake of a 70 Deg Sphere Cone Entry Vehicle

NASA Technical Reports Server (NTRS)

Sengupta, Anita; Wernet, Mark; Roeder, James; Kelsch, Richard; Witkowski, Al; Jones, Thomas

2009-01-01

Supersonic wind tunnel testing of Viking-type 0.8 m Disk-Gap-Band (DGB) parachutes was conducted in the NASA Glenn Research Center 10'x10' wind-tunnel. The tests were conducted in support of the Mars Science Laboratory Parachute Decelerator System development and qualification program. The aerodynamic coupling of the entry-vehicle wake to parachute flow-field is under investigation to determine the cause and functional dependence of a supersonic canopy breathing phenomenon referred to as area oscillations, characteristic of DGB's above Mach 1.5 operation. Four percent of full-scale parachutes (0.8 m) were constructed similar to the flight-article in material and construction techniques. The parachutes were attached to a 70-deg sphere-cone entry-vehicle to simulate the Mars flight configuration. The parachutes were tested in the wind-tunnel from Mach 2 to 2.5 in a Reynolds number range of 2x105 to 1x106, representative of a Mars deployment. Three different test configurations were investigated. In the first two configurations, the parachutes were constrained horizontally through the vent region to measure canopy breathing and wake interaction for fixed trim angles of 0 and 10 degrees from the free-stream. In the third configuration the parachute was unconstrained, permitted to trim and cone, similar to free-flight (but capsule motion is constrained), varying its alignment relative to the entry-vehicle wake. Non-intrusive test diagnostics were chosen to quantify parachute performance and provide insight into the flow field structure. An in-line loadcell provided measurement of unsteady and mean drag. Shadowgraph of the upstream parachute flow field was used to capture bow-shock motion and wake coupling. Particle image velocimetry provided first and second order flow field statistics over a planar region of the flow field, just upstream of the parachute. A photogrammetric technique was used to quantify fabric motion using multiple high speed video cameras to record the location in time and space of reflective targets placed on the canopy interior. The experimental findings including an updated drag model and the physical basis of the area oscillation phenomenon will be discussed.

Persistent effects of wildfire and debris flows on the invertebrate prey base of rainbow trout in Idaho streams

USGS Publications Warehouse

Rosenberger, A.E.; Dunham, J.B.; Buffington, J.M.; Wipfli, M.S.

2011-01-01

Wildfire and debris flows are important physical and ecological drivers in headwater streams of western North America. Past research has primarily examined short-term effects of these disturbances; less is known about longer-term impacts. We investigated wildfire effects on the invertebrate prey base for drift-feeding rainbow trout (Oncorhynchus mykiss, Walbaum) in Idaho headwater streams a decade after wildfire. Three stream types with different disturbance histories were examined: 1) unburned, 2) burned, and 3) burned followed by debris flows that reset channel morphology and riparian vegetation. The quantity of macroinvertebrate drift (biomass density) was more variable within than among disturbance categories. Average body weight and taxonomic richness of drift were significantly related to water temperature and influenced by disturbance history. During the autumn sampling period, the amount of terrestrial insects in rainbow trout diets varied with disturbance history and the amount of overhead canopy along the stream banks. Results indicate that there are detectable changes to macroinvertebrate drift and trout diet a decade after wildfire, and that these responses are better correlated with specific characteristics of the stream (water temperature, canopy cover) than with broad disturbance classes.

Flow Studies of Decelerators at Supersonic Speeds

NASA Technical Reports Server (NTRS)

1959-01-01

Wind tunnel tests recorded the effect of decelerators on flow at various supersonic speeds. Rigid parachute models were tested for the effects of porosity, shroud length, and number of shrouds. Flexible model parachutes were tested for effects of porosity and conical-shaped canopy. Ribbon dive brakes on a missile-shaped body were tested for effect of tension cable type and ribbon flare type. The final test involved a plastic sphere on riser lines.

Hearing Protection - Needs, Technologies and Performance (Protection de l’ouie - besoins, technologies et resultats)

DTIC Science & Technology

2010-11-01

Human (AHAAH) which takes into account the whole signal transmission from the free sound field to the cochlear structures. Auditory Hazard Units...airflow around the aircraft canopy and the front structure of the aircraft (boundary layer flow noise), and the other is from internally generated noise...from the pressurisation and cockpit conditioning systems. The boundary layer flow noise is dependent upon the dynamic pressures on the aircraft and

Green Mansions: The Evergreen Forests of the Pacific Northwest.

ERIC Educational Resources Information Center

Philipek, Frances; Smith, Shelley; Brook, Richard

2000-01-01

Explores the ecosystem in Pacific Northwest Coastal America and investigates land management issues. Discusses the impact of canopy trees on temperature and the forest itself. Explains fungi's relationship with trees and presents activities on stream flow, wood, volcanoes, and plants for the classroom. (YDS)

Relating geomorphic change and grazing to avian communities in riparian forests

USGS Publications Warehouse

Scott, M.L.; Skagen, S.K.; Merligliano, M.F.

2003-01-01

Avian conservation in riparian or bottomland forests requires an understanding of the physical and biotic factors that sustain the structural complexity of riparian vegetation. Riparian forests of western North America are dependent upon flow-related geomorphic processes necessary for establishment of new cottonwood and willow patches. In June 1995, we examined how fluvial geomorphic processes and long-term grazing influence the structural complexity of riparian vegetation and the abundance and diversity of breeding birds along the upper Missouri River in central Montana, a large, flow-regulated, and geomorphically constrained reach. Use by breeding birds was linked to fluvial geomorphic processes that influence the structure of these patches. Species richness and bird diversity increased with increasing structural complexity of vegetation (F1,32 = 75.49, p < 0.0001; F1,32 = 79.76, p < 0.0001, respectively). Bird species composition was significantly correlated with vegetation strata diversity (rs,33 = 0.98, p < 0.0001). Bird abundance in canopy and tall-shrub foraging guilds increased significantly with increasing tree cover and tall-shrub cover (F1,22 = 34.68, p < 0.0001; F1,20 = 22.22, p < 0.0001, respectively). Seventeen bird species, including five species of concern (e.g., Red-eyed Vireo [Vireo olivaceus]), were significantly associated (p < 0.10) with structurally complex forest patches, whereas only six bird species were significantly associated with structurally simple forest patches. We related the structural complexity of 34 riparian vegetation patches to geomorphic change, woody vegetation establishment, and grazing history over a 35-year post-dam period (1953–1988). The structural complexity of habitat patches was positively related to recent sediment accretion (t33 = 3.31, p = 0.002) and vegetation establishment (t20.7 = −3.63, p = 0.002) and negatively related to grazing activity (t19.6 = 3.75, p = 0.001). Avian conservation along rivers like the upper Missouri requires maintenance of the geomorphic processes responsible for tree establishment and management of land-use activities in riparian forests.

Attribution and Characterisation of Sclerophyll Forested Landscapes Over Large Areas

NASA Astrophysics Data System (ADS)

Jones, Simon; Soto-Berelov, Mariela; Suarez, Lola; Wilkes, Phil; Woodgate, Will; Haywood, Andrew

2016-06-01

This paper presents a methodology for the attribution and characterisation of Sclerophyll forested landscapes over large areas. First we define a set of woody vegetation data primitives (e.g. canopy cover, leaf area index (LAI), bole density, canopy height), which are then scaled-up using multiple remote sensing data sources to characterise and extract landscape woody vegetation features. The advantage of this approach is that vegetation landscape features can be described from composites of these data primitives. The proposed data primitives act as building blocks for the re-creation of past woody characterisation schemes as well as allowing for re-compilation to support present and future policy and management and decision making needs. Three main research sites were attributed; representative of different sclerophyll woody vegetated systems (Box Iron-bark forest; Mountain Ash forest; Mixed Species foothills forest). High resolution hyperspectral and full waveform LiDAR data was acquired over the three research sites. At the same time, land management agencies (Victorian Department of Environment, Land Water and Planning) and researchers (RMIT, CRC for Spatial Information and CSIRO) conducted fieldwork to collect structural and functional measurements of vegetation, using traditional forest mensuration transects and plots, terrestrial lidar scanning and high temporal resolution in-situ autonomous laser (VegNet) scanners. Results are presented of: 1) inter-comparisons of LAI estimations made using ground based hemispherical photography, LAI 2200 PCA, CI-110 and terrestrial and airborne laser scanners; 2) canopy height and vertical canopy complexity derived from airborne LiDAR validated using ground observations; and, 3) time-series characterisation of land cover features. 1. Accuracy targets for remotely sensed LAI products to match within ground based estimates are ± 0.5 LAI or a 20% maximum (CEOS/GCOS) with new aspirational targets of 5%). In this research we conducted a total of 67 ground-based method-to-method pairwise comparisons across 11 plots in five sites, incorporating the previously mentioned LAI methods. Out of the 67 comparisons, 29 had an RMSE ≥ 0.5 LAIe. This has important implications for the validation of remotely sensed products since ground based techniques themselves exhibit LAI variations greater than internationally recommended guidelines for satellite product accuracies. 2. Two methods of canopy height derivation are proposed and tested over a large area (4 Million Ha). 99th percentile maximum height achieved a RMSE of 6.6%, whilst 95th percentile dominant height a RMSE = 10.3%. Vertical canopy complexity (i.e. the number of forest layers of strata) was calculated as the local maxima of vegetation density within the LiDAR canopy profile and determined using a cubic spline smoothing of Pgap. This was then validated against in-situ and LiDAR observations of canopy strata with an RMSE 0.39 canopy layers. 3. Preliminary results are presented of landcover characterisation using LandTrendr analysis of Landsat LEDAPS data. kNN is then used to link these features to a dense network of 800 field plots sites.

Evaluation of a laser scanning sensor on detection of complex shaped targets for variable-rate sprayer development

USDA-ARS?s Scientific Manuscript database

Sensors that can accurately measure canopy structures are prerequisites for development of advanced variable-rate sprayers. A 270° radial range laser sensor was evaluated for its accuracy to measure dimensions of target surfaces with complex shapes and sizes. An algorithm for data acquisition and 3-...

Legacy of Pre-Disturbance Spatial Pattern Determines Early Structural Diversity following Severe Disturbance in Montane Spruce Forests

PubMed Central

Bače, Radek; Svoboda, Miroslav; Janda, Pavel; Morrissey, Robert C.; Wild, Jan; Clear, Jennifer L.; Čada, Vojtěch; Donato, Daniel C.

2015-01-01

Background Severe canopy-removing disturbances are native to many temperate forests and radically alter stand structure, but biotic legacies (surviving elements or patterns) can lend continuity to ecosystem function after such events. Poorly understood is the degree to which the structural complexity of an old-growth forest carries over to the next stand. We asked how pre-disturbance spatial pattern acts as a legacy to influence post-disturbance stand structure, and how this legacy influences the structural diversity within the early-seral stand. Methods Two stem-mapped one-hectare forest plots in the Czech Republic experienced a severe bark beetle outbreak, thus providing before-and-after data on spatial patterns in live and dead trees, crown projections, down logs, and herb cover. Results Post-disturbance stands were dominated by an advanced regeneration layer present before the disturbance. Both major species, Norway spruce (Picea abies) and rowan (Sorbus aucuparia), were strongly self-aggregated and also clustered to former canopy trees, pre-disturbance snags, stumps and logs, suggesting positive overstory to understory neighbourhood effects. Thus, although the disturbance dramatically reduced the stand’s height profile with ~100% mortality of the canopy layer, the spatial structure of post-disturbance stands still closely reflected the pre-disturbance structure. The former upper tree layer influenced advanced regeneration through microsite and light limitation. Under formerly dense canopies, regeneration density was high but relatively homogeneous in height; while in former small gaps with greater herb cover, regeneration density was lower but with greater heterogeneity in heights. Conclusion These findings suggest that pre-disturbance spatial patterns of forests can persist through severe canopy-removing disturbance, and determine the spatial structure of the succeeding stand. Such patterns constitute a subtle but key legacy effect, promoting structural complexity in early-seral forests as well as variable successional pathways and rates. This influence suggests a continuity in spatial ecosystem structure that may well persist through multiple forest generations. PMID:26421726

The shifting nature of vegetation controls on peak snowpack with varying slope and aspect

NASA Astrophysics Data System (ADS)

Biederman, J. A.; Harpold, A. A.; Broxton, P. D.; Brooks, P. D.

2012-12-01

The controls on peak seasonal snowpack are known to shift between forested and open environments as well as with slope and aspect. Peak snowpack is predicted well by interception models under uniformly dense canopy, while topography, wind and radiation are strong predictors in open areas. However, many basins have complex mosaics of forest canopy and small gaps, where snowpack controls involve complex interactions among climate, topography and forest structure. In this presentation we use a new fully distributed tree-scale model to investigate vegetation controls on snowpack for a range of slope and aspect, and we evaluate the energy balance in forest canopy and gap environments. The model is informed by airborne LiDAR and ground-based observations of climate, vegetation and snowpack. It represents interception, snow distribution by wind, latent and sensible heat fluxes, and radiative fluxes above and below the canopy at a grid scale of 1 m square on an hourly time step. First, the model is minimally calibrated using continuous records of snow depth and snow water equivalent (SWE). Next, the model is evaluated using distributed observations at peak accumulation. Finally, the domain is synthetically altered to introduce ranges of slope and aspect. Northerly aspects accumulate greater peak SWE than southerly aspects (e.g. 275 mm vs. 250 mm at a slope of 28 %) but show lower spatial variability (e. g. CV = 0.14 vs. CV = 0.17 at slope of 28 %). On northerly aspects, most of the snowpack remains shaded by vegetation, whereas on southerly aspects the northern portions of gaps and southern forest edges receive direct insolation during late winter. This difference in net radiation makes peak SWE in forest gaps and adjacent forest edges more sensitive to topography than SWE in areas under dense canopy. Tree-scale modeling of snow dynamics over synthetic terrain offers extensive possibilities to test interactions among vegetation and topographic controls.

Turbulent flow and scalar transport in a large wind farm

NASA Astrophysics Data System (ADS)

Porte-Agel, F.; Markfort, C. D.; Zhang, W.

2012-12-01

Wind energy is one of the fastest growing sources of renewable energy world-wide, and it is expected that many more large-scale wind farms will be built and cover a significant portion of land and ocean surfaces. By extracting kinetic energy from the atmospheric boundary layer and converting it to electricity, wind farms may affect the transport of momentum, heat, moisture and trace gases (e.g. CO_2) between the atmosphere and the land surface locally and globally. Understanding wind farm-atmosphere interaction is complicated by the effects of turbine array configuration, wind farm size, land-surface characteristics, and atmospheric thermal stability. A wind farm of finite length may be modeled as an added roughness or as a canopy in large-scale weather and climate models. However, it is not clear which analogy is physically more appropriate. Also, surface scalar flux is affected by wind farms and needs to be properly parameterized in meso-scale and/or high-resolution numerical models. Experiments involving model wind farms, with perfectly aligned and staggered configurations, having the same turbine distribution density, were conducted in a thermally-controlled boundary-layer wind tunnel. A neutrally stratified turbulent boundary layer was developed with a surface heat source. Measurements of the turbulent flow and fluxes over and through the wind farm were made using a custom x-wire/cold-wire anemometer; and surface scalar flux was measured with an array of surface-mounted heat flux sensors far within the quasi-developed region of the wind-farm. The turbulence statistics exhibit similar properties to those of canopy-type flows, but retain some characteristics of surface-layer flows in a limited region above the wind farms as well. The flow equilibrates faster and the overall momentum absorption is higher for the staggered compared to the aligned farm, which is consistent with canopy scaling and leads to a larger effective roughness. Although the overall surface heat flux change produced by the wind farms is found to be small, with a net reduction of 4% for the staggered wind farm and nearly zero change for the aligned wind farm, the highly heterogeneous spatial distribution of the surface heat flux, dependent on wind farm layout, is significant. This comprehensive first wind-tunnel dataset on turbulent flow and scalar transport in wind farms will be further used to develop and validate new parameterizations of surface fluxes in numerical models.

Canopy structural complexity as a continental predictor of primary production: Using NEON to transform understanding of forest structure-function

NASA Astrophysics Data System (ADS)

Atkins, J. W.; Fahey, R. T.; Gough, C. M.; Hardiman, B. S.

2016-12-01

Ecosystem structure-function relationships represent a long-standing research area for ecosystem science. Relationships between canopy structural complexity (CSC) and net primary productivity (NPP), have been characterized for a limited number of sites, yet whether these relationships are conserved across eco-climatic boundaries remains unknown. We hypothesize an underlying mechanistic basis for global NPP-CSC linkages to include improved resource-use efficiency as CSC increases, examined here by correlating CSC with measures of light-use efficiency and nitrogen-use efficiency. Here we present a broad, continental scale analysis of CSC-NPP linkages. We are using multiple NEON sites coupled with other sites across a diverse array of temperate forest types spanning six eco-climatic domains of the continental United States to examine CSC-NPP relationships. Portable canopy LiDAR (PCL) data were used to calculate a suite of CSC metrics at the plot-level within each site. Ongoing work compares CSC to co-located measurements of wood net primary production estimated from the incremental change in woody biomass calculated using tree allometries. Results to date show CSC is highly variable across forest sites and may provide additional explanatory power for predicting NPP that is independent of other commonly used forest structural attributes such as leaf area index. CSC metrics such as rugosity vary widely across sites—ranging from high values (30 - 35) in complex canopies such as the Great Smoky Mountains to low values in open, savanna systems like North-Central Florida (< 0.5 - 2). NPP, and light- and nitrogen-use calculations are underway and will be paired with site-level CSC, with the expectation that CSC, resource-use efficiency, and NPP are positively correlated. Advancing understanding of how and why CSC affects forest NPP across a broad spatial dimension could transform mechanistic understanding of ecosystem structure-carbon cycling relationships, and greatly improve carbon cycling models and remote sensing applications, while providing a crucial linkage between the two.

Seasonal changes in Cyclobalanopsis glauca transpiration and canopy stomatal conductance and their dependence on subterranean water and climatic factors in rocky karst terrain

NASA Astrophysics Data System (ADS)

Huang, Yuqing; Li, Xiankun; Zhang, Zhongfeng; He, Chengxin; Zhao, Ping; You, Yeming; Mo, Ling

2011-05-01

SummaryThe presence of forest on south China karst is presumed to increase perennial epikarst spring flow, partly because there is adequate storage in bedrock fractures underlying the shallow soil in the forest. If true, transpiration of the ecosystem would not be strongly reduced by temperate drought if trees develop deep roots to reach the perched epikarst water. Therefore, in karst ecosystem the epikarst-soil-plant-atmosphere continuum (ESPAC) would be different from the SPAC in non-karst system. We measured transpiration and canopy conductance from a Cyclobalanopsis glauca (syn. Quercus glauca) stand on a rocky hill slope in South China during 2006-2007 by using the Granier's sap-flow method. Annual stand transpiration (836 mm y -1) accounted for 48.7% of the rainfall during the experimental year. Per month, daily stand transpiration ( E c) maximums varied between 2.1 mm d -1 in January (cool season) to 5.1 mm d -1 in July (hot season). In the driest months, September and October, E c of C. glauca was still high with maximum E c 3.82 mm d -1 and 2.96 mm d -1 respectively. Solar radiation ( PAR), vapor pressure deficiency ( VPD), and air temperature were simple influences on transpiration of C. glauca, which contributed to a quadratic power model, while soil water content ( SWC) moisture influence on transpiration was complicated, which SWC influenced E c greatly under higher VPD, but did not influence E c under low VPD. High stomatal openness occurred in C. glauca in the early morning and declined throughout the day. The relation coefficient between canopy stomatal conductance ( G c) and E c was high when VPD was more than 1.0 kPa, moderate when 0.5 kPa < VPD < 1.0 kPa, and low with VPD of less than 0.5 kPa. Under high VPD, stomatal control of transpiration is high. The pattern of seasonal change of transpiration and canopy stomatal conductance of the plant in karst regions is different from that in non-karst regions, with the stand transpiration and canopy stomatal conductance being high even during the dry season in the karst region because karst plants obtain water partially from the epikarst. With high stand transpiration and canopy stomatal conductance, karst vegetation is presumed to be the most important "pathway" for ESPAC.

Modeling the Interaction of Radiation Between Vegetation and the Seasonal Snowcover

NASA Astrophysics Data System (ADS)

Tribbeck, M. J.; Gurney, R. J.; Morris, E. M.; Pearson, D.

2001-12-01

Prediction of meltwater runoff is crucial to communities where the seasonal snowpack is the major water supply. Water is itself a vital resource and it carries nutrients both in solution and in suspension. Simulation of snowpack depletion at a point in open areas has previously been shown to produce accurate results using physically based models such as SNTHERM. However, the radiation balance is more complex under a forest canopy as radiation is scattered and absorbed by canopy elements. This can alter the timing and magnitude of snowpack runoff substantially. The interaction of radiation between a forest canopy and its underlying snowcover is modeled by the coupling of a physically based snow model and an optical and thermal radiation canopy model. The snow model, which is based on SNTHERM (Jordan, 1991), is a discrete, multi-layer, one-dimensional mass and energy budget model for snow and is formulated with an adaptive grid system that compresses with the compacting snowpack and allows retention of snowpack stratigraphy. The vegetation canopy model approximates the canopy as a series of discrete, randomly orientated elements that scatter and absorb optical and thermal radiation. Multiple scattering of radiation between canopy and snow surface is modeled to conserve energy. The coupled model SNOWCAN differs from other vegetation-snow models such as GORT or SNOBAL as it models the albedo feedback mechanism. This is important as the albedo both affects and is affected by (through grain growth) the radiation balance. SNOWCAN is driven by standard atmospheric variables (including incident solar and thermal radiation) measured outside of the canopy and simulates snowpack properties such as temperature and density profiles as well as the sub-canopy radiation balance. The coupled snow and vegetation energy budget model was used to simulate snow depth at an old jack pine site during the 1994 BOREAS campaign. Measured and simulated snow depth showed good agreement throughout the accumulation and ablation periods, yielding an r2 correlation coefficient of 0.94. The snowpack development was also simulated at a point site within a fir stand in Reynolds Creek Experimental Watershed, Idaho, USA for the water year 2000-2001. A sensitivity analysis was carried out and comparisons were made with field observations of snowpack properties and sub-canopy radiation data for model validation.

Application of LiDAR to hydrologic flux estimation in Australian eucalypt forests (Invited)

NASA Astrophysics Data System (ADS)

Lane, P. N.; Mitchell, P. J.; Jaskierniak, D.; Hawthorne, S. N.; Griebel, A.

2013-12-01

The potential of LiDAR in ecohydrology is significant as characterising catchment vegetation is crucial to accurate estimation of evapotranspiration (ET). While this may be done at large scales for model parameterisation, stand-scale applications are equally appropriate where traditional methods of measurement of LAI or sapwood areas are time consuming and reliant on assumptions of representative sampling. This is particularly challenging in mountain forests where aspect, soil properties and energy budgets can vary significantly, reflected in the vegetation or where there are changes in the spatial distribution of structural attributes following disturbance. Recent research has investigated the spatial distribution of ET in a eucalypt forest in SE Australia using plot-scale sapflow, interception and forest floor ET measurements. LiDAR was used scale up these measurements. LiDAR (0.16 m scanner footprint) canopy indices were correlated via stepwise regression with 4 water use scalars: basal area (BA), sapwood area (SA), leaf area index (LAI) and canopy coverage (C), with Hmed, Hmean, H80, H95 the best predictors. Combining these indices with empirical relationships between SA and BA, and SA and transpiration (T), and inventory plot 'ground truthing' transpiration was estimated across the 1.3 km2 catchment. Interception was scaled via the Gash model with LiDAR derived inputs. The up-scaling showed a significant variability in the spatial distribution of ET, related to the distribution of SA. The use of LiDAR meant scaling could be achieved at an appropriate spatial scale (20 x 20 m) to the measurements. The second example is the use of airborne LiDAR in developing growth forest models for hydrologic modeling. LiDAR indices were used to stratify multilayered forests using mixed-effect models with a wide range of theoretical distribution functions. When combined with historical plot-scale inventory data we show demonstrated improved growth modeling over traditional inventory methods.These models can be used to parameterize hydrologic models to explore disturbance and age-related ET changes, and develop spatial-temporal maps of ET based on accurate representation of sapwood areas in complex terrain. The third example involves analyses of stand growth and long term streamflow response to thinning treatments in eucalyptus regnans forests. These forests have a strong age-streamflow relationship that can lead to streamflow declines as disturbed stands regrow. A set of thinning treatments in small experimental catchments (uniform, strip and understorey removal) were implemented in 1978-1982. The streamflow analysis supported early findings that flows increase and then relaxed, but also detected a flow decline below expected undisturbed levels for most catchments. Airborne LiDAR was used to analyse the structural recovery of treated stands, estimate LAI and canopy coverage via gap-fraction analysis, and scale ET measurements. The LiDAR data revealed the association of treatment type and regrowth and demonstrated that despite a net reduction in overstorey stem density, stand LAI had recovered and may explain the flow response. Finally, new terrestrial LiDAR instruments are being used in conjunction with eddy-covariance flux tower and sapflow measurement to measure fine temporal scale carbon-water dynamics. These instruments can be combined with airborne derived data to produce 3 dimensional canopy profile for linkage with ET processes.

Use of RHEM to assess runoff and erosion following disturbance on rangelands

USDA-ARS?s Scientific Manuscript database

Landscape disturbance such as fire or woody plant encroachment on rangelands can have major impacts on the hydrological and erosion responses. As canopy and ground cover are reduced, soil sediments become available and can be detached by rain splash and overland flow. Disturbance can also increase t...

Regenerating oak-dominated forests using irregular, gap-based silvicultural systems

Treesearch

John M. Lhotka; Michael R. Saunders; John M. Kabrick; Daniel C. Dey

2013-01-01

Throughout the Eastern United States, practitioners have primarily focused on using uniformly applied even-aged approaches to regenerate oak species. Irregular, gap-based silvicultural systems offer an alternative that retains continuous canopy cover, creates heterogeneous forest structure, and provides multiple income flows over a rotation. Although commonly used in...

Diversity of Bats in Contrasting Habitats of Hulu Terengganu Dipterocarp Forest and Setiu Wetland BRIS Forest with a Note on Preliminary Study of Vertical Stratification of Pteropodid Bats

PubMed Central

Pounsin, Grace; Wahab, Nur Syahirah; Roslan, Azuan; Zahidin, Muhamad Aidil; Pesiu, Elizabeth; Tamrin, Nur Aida Md; Abdullah, M T

2018-01-01

A study of the bat diversity was conducted in Hulu Terengganu dipterocarp forest and Setiu Wetland Beach Ridges Interspersed with Swales (BRIS) forest in Terengganu, to study the species diversity, composition and stratification of fruit bats from the understorey to the forest canopy. Mist nets were set up at the understorey, sub-canopy and canopy layer while harp traps were set up at the understorey layer. We recorded 170 individuals from six families’ compromised 21 species from Hulu Terengganu dipterocarp forests and four species from Setiu Wetland BRIS forests throughout the sampling period. Megaerops ecaudatus and Cynopterus brachyotis were the most dominant species in Hulu Terengganu dipterocarp forest and Setiu Wetland BRIS forests. Our study also recorded two species with new distributional records for the east coast of Peninsular Malaysia, namely, Rhinolophus chiewkweeae and Chaerephon johorensis in Hulu Terengganu dipterocarp forests. Potential factors that might influence the results were in terms of the canopy covers, the structural complexity of canopy, food availability and spatial characteristics. This study was able to increase the knowledge on the species diversity and composition of bats in Hulu Terengganu dipterocarp forest and Setiu Wetland BRIS forest, thus, further aid in the effort of bat conservation in both areas. PMID:29644015

Drought stress and carbon uptake in an Amazon forest measured with spaceborne imaging spectroscopy

PubMed Central

Asner, Gregory P.; Nepstad, Daniel; Cardinot, Gina; Ray, David

2004-01-01

Amazônia contains vast stores of carbon in high-diversity ecosystems, yet this region undergoes major changes in precipitation affecting land use, carbon dynamics, and climate. The extent and structural complexity of Amazon forests impedes ground studies of ecosystem functions such as net primary production (NPP), water cycling, and carbon sequestration. Traditional modeling and remote-sensing approaches are not well suited to tropical forest studies, because (i) biophysical mechanisms determining drought effects on canopy water and carbon dynamics are poorly known, and (ii) remote-sensing metrics of canopy greenness may be insensitive to small changes in leaf area accompanying drought. New spaceborne imaging spectroscopy may detect drought stress in tropical forests, helping to monitor forest physiology and constrain carbon models. We combined a forest drought experiment in Amazônia with spaceborne imaging spectrometer measurements of this area. With field data on rainfall, soil water, and leaf and canopy responses, we tested whether spaceborne hyperspectral observations quantify differences in canopy water and NPP resulting from drought stress. We found that hyperspectral metrics of canopy water content and light-use efficiency are highly sensitive to drought. Using these observations, forest NPP was estimated with greater sensitivity to drought conditions than with traditional combinations of modeling, remote-sensing, and field measurements. Spaceborne imaging spectroscopy will increase the accuracy of ecological studies in humid tropical forests. PMID:15071182

High-resolution tree canopy mapping for New York City using LIDAR and object-based image analysis

NASA Astrophysics Data System (ADS)

MacFaden, Sean W.; O'Neil-Dunne, Jarlath P. M.; Royar, Anna R.; Lu, Jacqueline W. T.; Rundle, Andrew G.

2012-01-01

Urban tree canopy is widely believed to have myriad environmental, social, and human-health benefits, but a lack of precise canopy estimates has hindered quantification of these benefits in many municipalities. This problem was addressed for New York City using object-based image analysis (OBIA) to develop a comprehensive land-cover map, including tree canopy to the scale of individual trees. Mapping was performed using a rule-based expert system that relied primarily on high-resolution LIDAR, specifically its capacity for evaluating the height and texture of aboveground features. Multispectral imagery was also used, but shadowing and varying temporal conditions limited its utility. Contextual analysis was a key part of classification, distinguishing trees according to their physical and spectral properties as well as their relationships to adjacent, nonvegetated features. The automated product was extensively reviewed and edited via manual interpretation, and overall per-pixel accuracy of the final map was 96%. Although manual editing had only a marginal effect on accuracy despite requiring a majority of project effort, it maximized aesthetic quality and ensured the capture of small, isolated trees. Converting high-resolution LIDAR and imagery into usable information is a nontrivial exercise, requiring significant processing time and labor, but an expert system-based combination of OBIA and manual review was an effective method for fine-scale canopy mapping in a complex urban environment.

Remote camera monitoring and a mark – recapture study of the wandering salamander in a redwood forest canopy

Treesearch

Jim Campbell-Spickler; Stephen C. Sillett

2017-01-01

Crowns of old redwoods (Sequoia sempervirens (D. Don) Endl.) are teaming with life. Storm damage followed by recovery via trunk reiteration increases the structural complexity of redwood crowns over time. Bark and wood surfaces within complex redwood crowns accumulate debris and become covered with epiphytes. Arboreal soils develop beneath...

Leaf Phenology of Amazonian Canopy Trees as Revealed by Spectral and Physiochemical Measurements

NASA Astrophysics Data System (ADS)

Chavana-Bryant, C.; Gerard, F. F.; Malhi, Y.; Enquist, B. J.; Asner, G. P.

2013-12-01

The phenological dynamics of terrestrial ecosystems reflect the response of the Earth's biosphere to inter- and intra-annual dynamics of climatic and hydrological regimes. Some Dynamic Global Vegetation Models (GDVMs) have predicted that by 2050 the Amazon rainforest will begin to dieback (Cox et al. 2000, Nature) or that the ecosystem will become unsustainable (Salazar et al. 2007, GRL). One major component in DGVMs is the simulation of vegetation phenology, however, modelers are challenged with the estimation of tropical phenology which is highly complex. Current modeled phenology is based on observations of temperate vegetation and accurate representation of tropical phenology is long overdue. Remote sensing (RS) data are a key tool in monitoring vegetation dynamics at regional and global scales. Of the many RS techniques available, time-series analysis of vegetation indices (VIs) has become the most common approach in monitoring vegetation phenology (Samanta et al. 2010, GRL; Bradley et al. 2011, GCB). Our research focuses on investigating the influence that age related variation in the spectral reflectance and physiochemical properties of leaves may have on VIs of tropical canopies. In order to do this, we collected a unique leaf and canopy phenological dataset at two different Amazonian sites: Inselberg, French Guyana (FG) and Tambopata, Peru (PE). Hyperspectral reflectance measurements were collected from 4,102 individual leaves sampled to represent different leaf ages and vertical canopy positions (top, mid and low canopy) from 20 different canopy tree species (8 in FG and 12 in PE). These leaf spectra were complemented with 1) leaf physical measurements: fresh and dry weight, area and thickness, LMA and LWC and 2) leaf chemical measurements: %N, %C, %P, C:N and d13C. Canopy level observations included top-of-canopy reflectance measurements obtained using a multispectral 16-band radiometer, leaf demography (tot. number and age distribution) and branch structural measurements (space between leaves, min. and max. season's growth and diameter) of two 1m branches harvested from each canopy level. Both leaf and canopy-level observations where collected monthly when trees where not in flush and weekly during the period of leaf flushing. Here, we present our leaf spectral and physiochemical results. Results show 1) changes in leaf spectral and physiochemical properties related to leaf age, 2) the most significant changes in the leaves' spectrum during different stages in their life cycle, and 3) how leaf spectral changes are related to changes in the chemical and physical properties of the leaves as they progress through their life cycle. Future work will involve the incorporation of leaf and canopy observations into a light canopy interaction model to investigate the possibility that seasonal variation in VIs may be driven by leaf aging as well as by the shedding or appearance of new leaves.

Effects of the interception of litterfall by the understory on carbon cycling in eucalyptus plantations of South China.

PubMed

Yang, Long; Wang, Jun; Huang, Yuhui; Hui, Dafeng; Wen, Meili

2014-01-01

For the purposes of forest restoration, carbon (C) fixation, and economic improvement, eucalyptus (Eucalyptus urophylla) has been widely planted in South China. The understory of eucalyptus plantations is often occupied by a dense community of the fern Dicranopteris dichotoma, which intercepts tree canopy leaf litter before it reaches the ground. To understand the effects of this interception of litterfall on C cycling in eucalyptus plantations, we quantified the mass of intercepted litter and the influences of litterfall interception on litter decomposition and soil respiration. The total mass of E. urophylla litterfall collected on the understory was similar to that collected by the traditional litter trap method. All of the eucalyptus litterfall is intercepted by the D. dichotoma canopy. Of the litterfall that was intercepted by D. dichotoma, 20-40% and 60-80% was intercepted by the top (50-100 cm) and bottom (0-50 cm) of the understory canopy, respectively. Intercepted litterfall decomposed faster at the bottom of understory canopy (at the base of the plants) than at the top, and decomposition was slower on the soil surface in the absence of understory than on any location in the understory canopy. Soil respiration was highest when both the understory and litter were present and was lowest when both the understory and litter were absent. These results indicate that litterfall interception changed carbon flow between aboveground and belowground through litter decomposition and soil respiration, which changed carbon cycling in eucalyptus plantations. The effects of the understory on litter decomposition and soil respiration should be considered in ecosystem carbon models.

Evaluation of a micro-scale wind model's performance over realistic building clusters using wind tunnel experiments

NASA Astrophysics Data System (ADS)

Zhang, Ning; Du, Yunsong; Miao, Shiguang; Fang, Xiaoyi

2016-08-01

The simulation performance over complex building clusters of a wind simulation model (Wind Information Field Fast Analysis model, WIFFA) in a micro-scale air pollutant dispersion model system (Urban Microscale Air Pollution dispersion Simulation model, UMAPS) is evaluated using various wind tunnel experimental data including the CEDVAL (Compilation of Experimental Data for Validation of Micro-Scale Dispersion Models) wind tunnel experiment data and the NJU-FZ experiment data (Nanjing University-Fang Zhuang neighborhood wind tunnel experiment data). The results show that the wind model can reproduce the vortexes triggered by urban buildings well, and the flow patterns in urban street canyons and building clusters can also be represented. Due to the complex shapes of buildings and their distributions, the simulation deviations/discrepancies from the measurements are usually caused by the simplification of the building shapes and the determination of the key zone sizes. The computational efficiencies of different cases are also discussed in this paper. The model has a high computational efficiency compared to traditional numerical models that solve the Navier-Stokes equations, and can produce very high-resolution (1-5 m) wind fields of a complex neighborhood scale urban building canopy (~ 1 km ×1 km) in less than 3 min when run on a personal computer.

Calculating the micrometeorological influences on the speed of sound through the atmosphere in forests.

PubMed

Tunick, Arnold

2003-10-01

A key element in determining point-to-point acoustic transmission within and above forests is modeling the variation (with height above ground) of the effective speed of sound. Effective speed of sound is readily derived from estimates of air temperature, relative humidity, and wind velocity. However, meteorological models for the forest canopy vary from comparatively simple to academically complex, requiring different amounts and numbers of inputs and computer capabilities. In addition, not all canopy profile models are suitable for acoustic applications. In this paper, a meteorological computer model for the forest canopy is developed to derive continuous profiles of effective sound speed from the ground to 3 h, where h is the height of the canopy. In turn, these profiles are used to make some initial approximations of short-range acoustic transmission loss through a uniform forest stand for typical clear sky, midday atmospheric conditions. Also, a radiative transfer and energy budget algorithm is incorporated into the model to obtain the appropriate heat source profile for any time of day. Thus, physics-based micrometeorology is coupled to acoustics for future applications of acoustic information in forest environments.

Effects of Debris Flows on Stream Ecosystems of the Klamath Mountains, Northern California

NASA Astrophysics Data System (ADS)

Cover, M. R.; Delafuente, J. A.; Resh, V. H.

2006-12-01

We examined the long-term effects of debris flows on channel characteristics and aquatic food webs in steep (0.04-0.06 slope), small (4-6 m wide) streams. A large rain-on-snow storm event in January 1997 resulted in numerous landslides and debris flows throughout many basins in the Klamath Mountains of northern California. Debris floods resulted in extensive impacts throughout entire drainage networks, including mobilization of valley floor deposits and removal of vegetation. Comparing 5 streams scoured by debris flows in 1997 and 5 streams that had not been scoured as recently, we determined that debris-flows decreased channel complexity by reducing alluvial step frequency and large woody debris volumes. Unscoured streams had more diverse riparian vegetation, whereas scoured streams were dominated by dense, even-aged stands of white alder (Alnus rhombiflia). Benthic invertebrate shredders, especially nemourid and peltoperlid stoneflies, were more abundant and diverse in unscoured streams, reflecting the more diverse allochthonous resources. Debris flows resulted in increased variability in canopy cover, depending on degree of alder recolonization. Periphyton biomass was higher in unscoured streams, but primary production was greater in the recently scoured streams, suggesting that invertebrate grazers kept algal assemblages in an early successional state. Glossosomatid caddisflies were predominant scrapers in scoured streams; heptageniid mayflies were abundant in unscoured streams. Rainbow trout (Oncorhynchus mykiss) were of similar abundance in scoured and unscoured streams, but scoured streams were dominated by young-of-the-year fish while older juveniles were more abundant in unscoured streams. Differences in the presence of cold-water (Doroneuria) versus warm-water (Calineuria) perlid stoneflies suggest that debris flows have altered stream temperatures. Debris flows have long-lasting impacts on stream communities, primarily through the cascading effects of removal of riparian vegetation. Because debris flow frequency increases following road construction and timber harvest, the long-term biological effects of debris flows on stream ecosystems, including anadromous fish populations, needs to be considered in forest management decisions.

Similarity and Scale Invariance of Velocity and Temperature Structure Functions within and above Dense Canopies

NASA Astrophysics Data System (ADS)

Ghannam, K.; Katul, G. G.; Chamecki, M.

2016-12-01

The scale-wise properties of turbulent flow statistics are conventionally quantified using the structure function D_ss (r)= <〖(Δs)〗^2 > describing velocity (s=u) or scalar (s=c) concentration increments Δs=s(x+r)-s(x) at various scales or separation distances r, where <.> is Reynolds averaging over coordinates of statistical homogeneity. For locally homogeneous and isotropic turbulence, the structure function can unfold statistical invariance of the form D_ss (βr)=β^p D_ss (r) as has been demonstrated by Kolmogorov's theory for the inertial subrange in the absence of intermittency corrections. For scales larger than inertial, scale invariance need not hold though universal scaling properties can still emerge provided an appropriate length and velocity scales are identified. One recent study on the structure function of the streamwise velocity (s=u) in smooth and rough wall-bounded flows argued that a logarithmic scaling of the form D_ss/(u_*^2 )=A+B ln(r/l_ɛ ) exists at any height z above the wall (or roughness elements), with,l_ɛ,〖 u〗_*, A and B being a dissipation length scale, the friction velocity, and two similarity constants to be determined. Whether this scaling is valid across all atmospheric stability regimes in the roughness sublayer (RSL) and the possible co-existence of length scales other than l_ɛ that collapse D_ss (r) for velocity and temperature frames the scope of this work. Using year-round field measurements within and above an Amazonian canopy, the work here explores the aforementioned scaling for the streamwise (s=u) and vertical velocity (s=w) components, along with its extension to active scalars (s=T, the air temperature) inside canopies and in the RSL above canopies. While the premise is that a length scale such as l_ɛ may serve as a master closure length scale for turbulent momentum and heat flux budgets, the role of the vorticity thickness, the Obukhov length, the adjustment length scale, and height z are also explored for various scale (or r) regimes. Because the RSL blends D_ss (r) from its form inside the canopy to its form in the well-studied atmospheric surface layer, the scaling laws derived here offer a new perspective on the thickness of the RSL for momentum and scalars and its variations with atmospheric stability.

Implementation of a subcanopy solar radiation model on a forested headwater basin in the Southern Appalachians to estimate riparian canopy density and stream insolation for stream temperature models

NASA Astrophysics Data System (ADS)

Belica, L.; Petras, V.; Iiames, J. S., Jr.; Caldwell, P.; Mitasova, H.; Nelson, S. A. C.

2016-12-01

Water temperature is a key aspect of water quality and understanding how the thermal regimes of forested headwater streams may change in response to climatic and land cover changes is increasingly important to scientists and resource managers. In recent years, the forested mountain watersheds of the Southeastern U.S. have experienced changing climatic patterns as well as the loss of a keystone riparian tree species and anticipated hydrologic responses include lower summer stream flows and decreased stream shading. Solar radiation is the main source of thermal energy to streams and a key parameter in heat-budget models of stream temperature; a decrease in flow volume combined with a reduction in stream shading during summer have the potential to increase stream temperatures. The high spatial variability of forest canopies and the high spatio-temporal variability in sky conditions make estimating the solar radiation reaching small forested headwater streams difficult. The Subcanopy Solar Radiation Model (SSR) (Bode et al. 2014) is a GIS model that generates high resolution, spatially explicit estimates of solar radiation by incorporating topographic and vegetative shading with a light penetration index derived from leaf-on airborne LIDAR data. To evaluate the potential of the SSR model to provide estimates of stream insolation to parameterize heat-budget models, it was applied to the Coweeta Basin in the Southern Appalachians using airborne LIDAR (NCALM 2009, 1m resolution). The LIDAR derived canopy characteristics were compared to current hyperspectral images of the canopy for changes and the SSR estimates of solar radiation were compared with pyranometer measurements of solar radiation at several subcanopy sites during the summer of 2016. Preliminary results indicate the SSR model was effective in identifying variations in canopy density and light penetration, especially in areas associated with road and stream corridors and tree mortality. Current LIDAR data and more solar radiation measurements are needed to fully validate the accuracy of the SSR model in Southern Appalachian forests, but initial results suggest the high resolution, spatially explicit estimates of solar radiation can improve solar radiation parameter estimates in deterministic models of stream temperature in forested landscapes.

Evaluating radiative transfer schemes treatment of vegetation canopy architecture in land surface models

NASA Astrophysics Data System (ADS)

Braghiere, Renato; Quaife, Tristan; Black, Emily

2016-04-01

Incoming shortwave radiation is the primary source of energy driving the majority of the Earth's climate system. The partitioning of shortwave radiation by vegetation into absorbed, reflected, and transmitted terms is important for most of biogeophysical processes, including leaf temperature changes and photosynthesis, and it is currently calculated by most of land surface schemes (LSS) of climate and/or numerical weather prediction models. The most commonly used radiative transfer scheme in LSS is the two-stream approximation, however it does not explicitly account for vegetation architectural effects on shortwave radiation partitioning. Detailed three-dimensional (3D) canopy radiative transfer schemes have been developed, but they are too computationally expensive to address large-scale related studies over long time periods. Using a straightforward one-dimensional (1D) parameterisation proposed by Pinty et al. (2006), we modified a two-stream radiative transfer scheme by including a simple function of Sun zenith angle, so-called "structure factor", which does not require an explicit description and understanding of the complex phenomena arising from the presence of vegetation heterogeneous architecture, and it guarantees accurate simulations of the radiative balance consistently with 3D representations. In order to evaluate the ability of the proposed parameterisation in accurately represent the radiative balance of more complex 3D schemes, a comparison between the modified two-stream approximation with the "structure factor" parameterisation and state-of-art 3D radiative transfer schemes was conducted, following a set of virtual scenarios described in the RAMI4PILPS experiment. These experiments have been evaluating the radiative balance of several models under perfectly controlled conditions in order to eliminate uncertainties arising from an incomplete or erroneous knowledge of the structural, spectral and illumination related canopy characteristics typical of model comparisons with in-situ observations. The structure factor parameters were obtained for each canopy structure through the inversion against direct and diffuse fraction of absorbed photosynthetically active radiation (fAPAR), and albedo PAR. Overall, the modified two-stream approximation consistently showed a good agreement with the RAMI4PILPS reference values under direct and diffuse illumination conditions. It is an efficient and accurate tool to derive PAR absorptance and reflectance for scenarios with different canopy densities, leaf densities and soil background albedos, with especial attention to brighter backgrounds, i.e., snowy. The major difficulty of its applicability in the real world is to acquire the parameterisation parameters from in-situ observations. The derivation of parameters from Digital Hemispherical Photographs (DHP) is highly promising at forest stands scales. DHP provide a permanent record and are a valuable information source for position, size, density, and distribution of canopy gaps. The modified two-stream approximation parameters were derived from gap probability data extracted from DHP obtained in a woody savannah in California, USA. Values of fAPAR and albedo PAR were evaluated against a tree-based vegetation canopy model, MAESPA, which used airborne LiDAR data to define the individual-tree locations, and extract structural information such as tree height and crown diameter. The parameterisation improved the performance of a two-stream approximation by making it achieves comparable results to complex 3D model calculations under observed conditions.

Documentation for Program SOILSIM: A computer program for the simulation of heat and moisture flow in soils and between soils, canopy and atmosphere

NASA Technical Reports Server (NTRS)

Field, Richard T.

1990-01-01

SOILSIM, a digital model of energy and moisture fluxes in the soil and above the soil surface, is presented. It simulates the time evolution of soil temperature and moisture, temperature of the soil surface and plant canopy the above surface, and the fluxes of sensible and latent heat into the atmosphere in response to surface weather conditions. The model is driven by simple weather observations including wind speed, air temperature, air humidity, and incident radiation. The model intended to be useful in conjunction with remotely sensed information of the land surface state, such as surface brightness temperature and soil moisture, for computing wide area evapotranspiration.

Global meta-analysis of leaf area index in wetlands indicates uncertainties in understanding of their ecosystem function

NASA Astrophysics Data System (ADS)

Dronova, I.; Taddeo, S.; Foster, K.

2017-12-01

Projecting ecosystem responses to global change relies on the accurate understanding of properties governing their functions in different environments. An important variable in models of ecosystem function is canopy leaf area index (LAI; leaf area per unit ground area) declared as one of the Essential Climate Variables in the Global Climate Observing System and extensively measured in terrestrial landscapes. However, wetlands have been largely under-represented in these efforts, which globally limits understanding of their contribution to carbon sequestration, climate regulation and resilience to natural and anthropogenic disturbances. This study provides a global synthesis of >350 wetland-specific LAI observations from 182 studies and compares LAI among wetland ecosystem and vegetation types, biomes and measurement approaches. Results indicate that most wetland types and even individual locations show a substantial local dispersion of LAI values (average coefficient of variation 65%) due to heterogeneity of environmental properties and vegetation composition. Such variation indicates that mean LAI values may not sufficiently represent complex wetland environments, and the use of this index in ecosystem function models needs to incorporate within-site variation in canopy properties. Mean LAI did not significantly differ between direct and indirect measurement methods on a pooled global sample; however, within some of the specific biomes and wetland types significant contrasts between these approaches were detected. These contrasts highlight unique aspects of wetland vegetation physiology and canopy structure affecting measurement principles that need to be considered in generalizing canopy properties in ecosystem models. Finally, efforts to assess wetland LAI using remote sensing strongly indicate the promise of this technology for cost-effective regional-scale modeling of canopy properties similar to terrestrial systems. However, such efforts urgently require more rigorous corrections for three-dimensional contributions of non-canopy material and non-vegetated surfaces to wetland canopy reflectance.

Opportunities and challenges to conserve water on the landscape in snow-dominated forests: The quest for the radiative minima and more...

NASA Astrophysics Data System (ADS)

Link, T. E.; Kumar, M.; Pomeroy, J. W.; Seyednasrollah, B.; Ellis, C. R.; Lawler, R.; Essery, R.

2012-12-01

In mountainous, forested environments, vegetation exerts a strong control on snowcover dynamics that affect ecohydrological processes, streamflow regimes, and riparian health. Snowcover deposition and ablation patterns in forests are controlled by a complex combination of canopy interception processes coupled with radiative and turbulent heat flux patterns related to topographic and canopy cover variations. In seasonal snow environments, snowcover ablation dynamics in forests are dominated by net radiation. Recent research indicates that in small canopy gaps a net radiation minima relative to both open and forested environments can occur, but depends strongly on solar angle, gap size, slope, canopy height and stem density. The optimal gap size to minimize radiation to snow was estimated to have a diameter between 1 and 2 times the surrounding vegetation height. Physically-based snowmelt simulations indicate that gaps may increase SWE and desynchronize snowmelt by approximately 3 weeks between north and south facing slopes, relative to undisturbed forests. On east and west facing slopes, small gaps cause melt to be slightly delayed relative to intact forests, and have a minimal effect on melt synchronicity between slopes. Recent research focused on canopy thinning also indicates that a net radiation minima occurs in canopies of intermediate densities. Physically-based radiative transfer simulations using a discrete tree-based model indicate that in mid-latitude level forests, the annually-integrated radiative minima occurs at a tree spacing of 2.65 relative to the canopy height. The radiative minima was found to occur in denser forests on south-facing slopes and sparser forests on north-facing slopes. The radiative minimums in thinned forests are controlled by solar angle, crown geometry and density, tree spacing, slope, and aspect. These results indicate that both gap and homogeneous forest thinning may be used to reduce snowmelt rates or alter melt synchronicity, but the exact configuration will be highly spatially variable. Development of management strategies to conserve water on the landscape to enhance forest and riparian health in a changing climate must also rigorously evaluate the effects of canopy thinning and specific hydrometeorological conditions on net radiation, turbulent fluxes, and snow interception processes.

The leaf angle distribution of natural plant populations: assessing the canopy with a novel software tool.

PubMed

Müller-Linow, Mark; Pinto-Espinosa, Francisco; Scharr, Hanno; Rascher, Uwe

2015-01-01

Three-dimensional canopies form complex architectures with temporally and spatially changing leaf orientations. Variations in canopy structure are linked to canopy function and they occur within the scope of genetic variability as well as a reaction to environmental factors like light, water and nutrient supply, and stress. An important key measure to characterize these structural properties is the leaf angle distribution, which in turn requires knowledge on the 3-dimensional single leaf surface. Despite a large number of 3-d sensors and methods only a few systems are applicable for fast and routine measurements in plants and natural canopies. A suitable approach is stereo imaging, which combines depth and color information that allows for easy segmentation of green leaf material and the extraction of plant traits, such as leaf angle distribution. We developed a software package, which provides tools for the quantification of leaf surface properties within natural canopies via 3-d reconstruction from stereo images. Our approach includes a semi-automatic selection process of single leaves and different modes of surface characterization via polygon smoothing or surface model fitting. Based on the resulting surface meshes leaf angle statistics are computed on the whole-leaf level or from local derivations. We include a case study to demonstrate the functionality of our software. 48 images of small sugar beet populations (4 varieties) have been analyzed on the base of their leaf angle distribution in order to investigate seasonal, genotypic and fertilization effects on leaf angle distributions. We could show that leaf angle distributions change during the course of the season with all varieties having a comparable development. Additionally, different varieties had different leaf angle orientation that could be separated in principle component analysis. In contrast nitrogen treatment had no effect on leaf angles. We show that a stereo imaging setup together with the appropriate image processing tools is capable of retrieving the geometric leaf surface properties of plants and canopies. Our software package provides whole-leaf statistics but also a local estimation of leaf angles, which may have great potential to better understand and quantify structural canopy traits for guided breeding and optimized crop management.

Evidence for the Activation of Shallow Preferential Flow Paths in a Tropical Panama Watershed Using Germanium and Silicon

NASA Astrophysics Data System (ADS)

Gardner, Christopher B.; Litt, Guy F.; Lyons, W. Berry; Ogden, Fred L.

2017-10-01

In humid tropical watersheds, the hydrologic flow paths taken by rain event waters and how they interact with groundwater and soil matrix water to form streamflow are poorly understood. Preferential flow paths (PFPs) confound storm infiltration processes, especially in the humid tropics where PFPs are common. This work applies germanium (Ge) and silicon (Si) as natural flow path tracers in conjunction with water stable isotopes and electrical conductivity to examine the rapid delivery of shallow soil water, the activation of PFPs, and event water partitioning in an experimental catchment in central Panama. We employed a three-component mixing model for hydrograph separation using the following end-member waters: (i) base flow (high [Si], low [Ge], and low Ge/Si ratio), (ii) dilute canopy throughfall (low [Si] and low [Ge]), and (iii) shallow (<15 cm) soil matrix water (low [Si], high [Ge], and high Ge/Si ratio). These three end-members bounded all observed Ge/Si streamflow ratios. During small rain events (<˜24 mm), base flow and dilute canopy throughfall components dominated stormflow. During larger precipitation events (>˜35 mm), we detected the third shallow soil water component with an elevated [Ge] and Ge/Si ratio. This component reached its maximum during the hydrograph's receding limb coincident with the maximum event fraction, and increased proportionally to the total storm rainfall exceeding ˜35 mm. Only shallow (<15 cm) soil matrix water exhibited elevated Ge concentrations and high Ge/Si ratios. This third component represents rapidly delivered soil matrix water combined with shallow lateral PFP activation through which event waters interact with soil minerals.

Impact of variations in mangrove pneumatophore density on boundary flow characteristics

NASA Astrophysics Data System (ADS)

Pilditch, C. A.; Horstman, E.; Bryan, K. R.; Mullarney, J. C.; Eager, C. A.

2016-12-01

Mangrove forests are common in subtropical and tropical environments, providing ecosystem services such as processing nutrients, carbon sequestration and coastal protection. Many of these services are dependent on the interaction between the aerial roots (pneumatophores), which extend upward from the seabed, and the boundary layer flows. Here, we present results from a series of laboratory experiments using natural Avicennia spp. pneumatophores ( 6 mm diameter, 7 cm high) at 3 different densities (71-268 m-2). Pneumatophore densities and positioning were quantified using photo quadrats from a fringing mangrove habitat (Tauranga Harbour, New Zealand). Natural pneumatophore covers were reconstructed over a 4.0 m test section in a recirculating flume using harvested roots. Two different flow speeds (10/15 cm/s) and three water depths (12/21/30 cm), were tested, providing a range of conditions from a partially emergent to a fully submerged canopy. Calculations using a*d*Cd, where a is frontal area per unit volume, d is structure height and Cd is the drag coefficient, assumed to be 1, suggest skimming flow should occur at an average pneumatophore spacing of <10 cm. However, our preliminary results show that flow still penetrates substantially (up to 3.5 m) into the canopy even at the highest density, suggesting that Avicennia pneumatophores in these fringing environments can both enhance or reduce the shear stress at the seabed depending on density. Avicennia roots spread radially from individual trees, and so pneumatophore densities can vary considerably over short distances. Our results show that this spreading behavior may significantly affect the morphological development of the seaward fringe of a forest.

High-resolution LIDAR and ground observations of snow cover in a complex forested terrain in the Sierra Nevada - implications for optical remote sensing of seasonal snow.

NASA Astrophysics Data System (ADS)

Kostadinov, T. S.; Harpold, A.; Hill, R.; McGwire, K.

2017-12-01

Seasonal snow cover is a key component of the hydrologic regime in many regions of the world, especially those in temperate latitudes with mountainous terrain and dry summers. Such regions support large human populations which depend on the mountain snowpack for their water supplies. It is thus important to quantify snow cover accurately and continuously in these regions. Optical remote-sensing methods are able to detect snow and leverage space-borne spectroradiometers with global coverage such as MODIS to produce global snow cover maps. However, snow is harder to detect accurately in mountainous forested terrain, where topography influences retrieval algorithms, and importantly - forest canopies complicate radiative transfer and obfuscate the snow. Current satellite snow cover algorithms assume that fractional snow-covered area (fSCA) under the canopy is the same as the fSCA in the visible portion of the pixel. In-situ observations and first principles considerations indicate otherwise, therefore there is a need for improvement of the under-canopy correction of snow cover. Here, we leverage multiple LIDAR overflights and in-situ observations with a distributed fiber-optic temperature sensor (DTS) to quantify snow cover under canopy as opposed to gap areas at the Sagehen Experimental Forest in the Northern Sierra Nevada, California, USA. Snow-off LIDAR overflights from 2014 are used to create a baseline high-resolution digital elevation model and classify pixels at 1 m resolution as canopy-covered or gap. Low canopy pixels are excluded from the analysis. Snow-on LIDAR overflights conducted by the Airborne Snow Observatory in 2016 are then used to classify all pixels as snow-covered or not and quantify fSCA under canopies vs. in gap areas over the Sagehen watershed. DTS observations are classified as snow-covered or not based on diel temperature fluctuations and used as validation for the LIDAR observations. LIDAR- and DTS-derived fSCA is also compared with retrievals from hyperspectral imaging spectroradiometer (AVIRIS) data. Initial evidence suggest fSCA was generally lower under canopy and that overall snow cover estimates were overestimated as a result. Implications for a canopy correction applicable to coarser-resolution sensors like MODIS are discussed, as are topography and view angle effects.

Vertical stratification of forest canopy for segmentation of understory trees within small-footprint airborne LiDAR point clouds

NASA Astrophysics Data System (ADS)

Hamraz, Hamid; Contreras, Marco A.; Zhang, Jun

2017-08-01

Airborne LiDAR point cloud representing a forest contains 3D data, from which vertical stand structure even of understory layers can be derived. This paper presents a tree segmentation approach for multi-story stands that stratifies the point cloud to canopy layers and segments individual tree crowns within each layer using a digital surface model based tree segmentation method. The novelty of the approach is the stratification procedure that separates the point cloud to an overstory and multiple understory tree canopy layers by analyzing vertical distributions of LiDAR points within overlapping locales. The procedure does not make a priori assumptions about the shape and size of the tree crowns and can, independent of the tree segmentation method, be utilized to vertically stratify tree crowns of forest canopies. We applied the proposed approach to the University of Kentucky Robinson Forest - a natural deciduous forest with complex and highly variable terrain and vegetation structure. The segmentation results showed that using the stratification procedure strongly improved detecting understory trees (from 46% to 68%) at the cost of introducing a fair number of over-segmented understory trees (increased from 1% to 16%), while barely affecting the overall segmentation quality of overstory trees. Results of vertical stratification of the canopy showed that the point density of understory canopy layers were suboptimal for performing a reasonable tree segmentation, suggesting that acquiring denser LiDAR point clouds would allow more improvements in segmenting understory trees. As shown by inspecting correlations of the results with forest structure, the segmentation approach is applicable to a variety of forest types.

A radiation and energy budget algorithm for forest canopies

NASA Astrophysics Data System (ADS)

Tunick, A.

2006-01-01

Previously, it was shown that a one-dimensional, physics-based (conservation-law) computer model can provide a useful mathematical representation of the wind flow, temperatures, and turbulence inside and above a uniform forest stand. A key element of this calculation was a radiation and energy budget algorithm (implemented to predict the heat source). However, to keep the earlier publication brief, a full description of the radiation and energy budget algorithm was not given. Hence, this paper presents our equation set for calculating the incoming total radiation at the canopy top as well as the transmission, reflection, absorption, and emission of the solar flux through a forest stand. In addition, example model output is presented from three interesting numerical experiments, which were conducted to simulate the canopy microclimate for a forest stand that borders the Blossom Point Field Test Facility (located near La Plata, Maryland along the Potomac River). It is anticipated that the current numerical study will be useful to researchers and experimental planners who will be collecting acoustic and meteorological data at the Blossom Point Facility in the near future.

Overland flow, sediment output and nutrient loss from certain forested sites in the central Himalaya, India

NASA Astrophysics Data System (ADS)

Pathak, P. C.; Pandey, A. N.; Singh, J. S.

1984-03-01

Overland flow, sediment output and input and output of precipitation nutrients were evaluated on six forested sites in the central Himalaya during the 1981 and 1982 monsoon seasons. Overland flow was significantly different across the forests and the months of the rainy season. It was positively related with rainfall quantity and intensity, and was negatively related with tree canopy cover and with ground vegetation cover. Average overland flow was only 0.66% of the total incident rainfall, indicating that these sites are subsurface-flow systems. Sediment output was positively related to overland flow. Rainfall added a significant amount of nutrients to the forests. This extra-system input was greater than loss through overland flow + sediment output. The loss of nutrients from the forested sites was in the order: Mg > C > Ca > K = N = P.

CANOPY CONDUCTANCE OF PINUS TAEDA, LIQUIDAMBAR STYRACIFLUA AND QUERCUS PHELLOS UNDER VARYING ATMOSPHERIC AND SOIL WATER CONDITION

EPA Science Inventory

Sap flow, and atmospheric and soil water data were collected in closed-top chambers under conditions of high soil water potential for saplings of Liquidambar styraciflua L., Quercus phellos L., and Pinus taeda L., three co-occurring species in the southeastern USA. Responses of c...

Investigating Land-Use Effects on Hydrologic Processes and Water Quality in a Complex Karst Hydro-Region of the Central United States

NASA Astrophysics Data System (ADS)

Hubbart, J. A.; Bulliner, E. A.; Freeman, G. W.; Chinnasamy, P.; Hosmer, G. W.; Scollan, D. P.; Stokely, T. D.

2009-12-01

A century of watershed studies verify that hydrologic and water quality responses to land-use varies substantially physiographically. In the Oak dominated, Missouri Ozark Karst hydrogeologic region of the Central U.S., catchment studies are needed to validate current forest best management practices (BMPs). Similarly, studies are necessary that quantify urban degraded freshwater resources and disassembled riparian zone form and function. Given that continued human population growth over the next several decades will place unprecedented demands on forested and urban water resources, it is imperative to confront contemporary forested watershed issues that encompass the wildland - urban interface. Studies were initiated in the fall of 2008 to: a) validate current riparian forest BMPs, b) quantify peak flows and microclimate alteration due to urbanization, and c) quantify stream connectivity to adjacent riparian floodplains. Study catchments are located in the urbanizing Hinkson Creek Watershed (HCW, 231km2) and the Baskett Wildlife Research and Education Area (BREA, 8.9 km2), both watersheds centrally located in Missouri. Hydroclimate stations were installed at five locations along Hinkson Creek partitioning forest, cropland, and urban environments (nested-scale study design), and two opposing forested stream reaches of the BREA. Climate in central Missouri is generally classified as humid continental, with annual mean temperature and precipitation of approximately 12.6 °C and 1050 mm respectively. Study catchments land use spans old growth mixed deciduous forest to rural pastureland and the growing urbanized center of Columbia, Mo (population exceeding 101,000). Soils are highly variable prairie-forest transitional to loamy till with a well developed clay pan of thin cherty clay and silty to sandy clay. Preliminary analyses of BREA riparian data (summer 2009) indicate that average temperatures for E-W oriented stream reaches are 0.3 °C lower than the N-S reaches and 2.2 °C lower than climate reference sites, reflecting the effects of canopy layers, density, and landscape physiography. Average net shortwave radiation for N-S oriented reach was 3.2% higher than the E-W reach, while maximum net longwave radiation was 62.4% lower. These results may hold important implications for on-going surface energy balance computations assessing canopy influence on stream water temperature. Preliminary analyses of HCW flow data indicate that forested headwater systems better attenuate peak flows of small precipitation events (< 0.80 mm) relative to current urban capabilities. Precipitation events greater than 1.0 mm result in peak rainfall time to peak flow decreased by as much as 13% in urban settings accompanied by at least 4 cm higher stage and 5 to 10% greater flow volume. Average air temperature in urbanized Columbia can exceed the forested region by as much as 15%, and precipitation events can be 50% greater in magnitude. Results from these complimentary studies will produce necessary datasets to improve hydrologic process understanding and develop improved guidelines and management tools in complex hydrophysiographic regions of Missouri and the Central U.S.

Comparison of the evapotranspiration and its components before and after thinning in Japanese cedar and Japanese cypress forest

NASA Astrophysics Data System (ADS)

Tateishi, Makiko; Xiang, Yang; Matsuda, Hiroki; Saito, Takami; Sun, Haotian; Otsuki, Kyoichi; Kasahara, Tamao; Onda, Yuichi

2014-05-01

Water source area of Japan is often covered by forest, and 40 % of forest cover is coniferous plantation. Thinning has become a major tool in the management of plantation in recent years, but its effects on water cycle and its components are yet to be evaluated well. In this study, we investigated the changes in evapotranspiration and its components, including stand transpiration and canopy interception loss, after thinning in 50 years old Japanese cedar and Japanese cypress plantation at Yayama experimental catchment in Fukuoka, Japan. We established study plot in each Japanese cedar and Japanese cypress stand. Sap flow measurement was conducted for evaluating stand transpiration in each plot. Through fall and stem flow were also monitored to estimate canopy interception loss. The experiments were conducted over two years. During the measurements, 50 % of trees were thinned randomly in entire catchment, which has an area of 2.98 ha. Stem density was changed from 3945 to 1977 trees per ha after thinning. The reduction of daily stand transpiration in the studied Japanese cedar and cypress stands after thinning were 31.6 % and 48.2 % under the same condition of microclimate, respectively. These values were comparable to the changes in total sapwood area, 34.2 % and 44.5 %, and sap flow density did not change after thinning. It implies that sapwood area is a primary determinant of stand transpiration. Canopy interception ratios were 27 % and 26 % for Japanese cedar and cypress before thinning, and the ratios decreased to 24 % and 21 % after thinning, respectively. Thus, we obtained the changes in annual evapotranspiration and its components at catchment scale by using observation and models. The changes in partitioning of evapotranspiration is also discussed. The evapotranspiration before and after thinning were also compared to water balance data in this study site.

Tree Mortality Decreases Water Availability and Ecosystem Resilience to Drought in Piñon-Juniper Woodlands in the Southwestern U.S.: Tree Mortality in Semiarid Biomes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Morillas, L.; Pangle, R. E.; Maurer, G. E.

Climate-driven tree mortality has increased globally in response to warmer temperature and more severe drought. To examine how tree mortality in semi-arid biomes impacts surface water balance, we experimentally manipulated a piñon-juniper (PJ) woodland by girdling all adult piñon trees in a 4 ha area, decreasing piñon basal area by ~65%. Over 3.5 years (2009-2013), we compared water flux measurements from this girdled site with those from a nearby intact PJ woodland. Before and after girdling, the ratio of evapotranspiration (ET) to incoming precipitation was similar between the two sites. Girdling altered the partitioning of ET such that the contributionmore » of canopy transpiration to ET decreased 9-14% over the study period, relative to the intact control, while non-canopy ET increased. We attributed the elevated non-canopy ET in the girdled site each year to winter increases in sublimation, and summer increases in both soil evaporation and below-canopy transpiration. Although we expected that mortality of a canopy dominant would increase the availability of water and other resources to surviving vegetation, we observed a decrease in both soil volumetric water content and sap flow rates in the remaining trees at the girdled site, relative to the control. This post-girdling decrease in the performance of the remaining trees occurred during the severe 2011-2012 drought, suggesting that piñon mortality may trigger feedback mechanisms that leave PJ woodlands drier relative to undisturbed sites, and potentially more vulnerable to drought.« less

The influence of roadside solid and vegetation barriers on near-road air quality

NASA Astrophysics Data System (ADS)

Ghasemian, Masoud; Amini, Seyedmorteza; Princevac, Marko

2017-12-01

The current study evaluates the influence of roadside solid and vegetation barriers on the near-road air quality. Reynolds Averaged Navier-Stokes (RANS) technique coupled with the k - ε realizable turbulence model is utilized to investigate the flow pattern and pollutant concentration. A scalar transport equation is solved for a tracer gas to represent the roadway pollutant emissions. In addition, a broad range of turbulent Schmidt numbers are tested to calibrate the scalar transport equation. Three main scenarios including flat terrain, solid barrier, and vegetative barrier are studied. To validate numerical methodology, predicted pollutant concentration is compared with published wind tunnel data. Results show that the solid barrier induces an updraft motion and lofts the vehicle emission plume. Therefore, the ground-level pollutant concentration decreases compared to the flat terrain. For the vegetation barrier, different sub-scenarios with different vegetation densities ranging from approximately flat terrain to nearly solid barrier are examined. Dense canopies act in a similar manner as a solid barrier and mitigate the pollutant concentration through vertical mixing. On the other hand, the high porosity vegetation barriers reduce the wind speed and lead to a higher pollutant concentration. As the vegetation density increases, i.e. the barrier porosity decreases, the recirculation zone behind the canopy becomes larger and moves toward the canopy. The dense plant canopy with LAD = 3.33m-2m3 can improve the near-road air quality by 10% and high porosity canopy with LAD = 1m-2m3 deteriorates near-road air quality by 15%. The results of this study can be implemented as green infrastructure design strategies by urban planners and forestry organizations.

Effects of the Interception of Litterfall by the Understory on Carbon Cycling in Eucalyptus Plantations of South China

PubMed Central

Huang, Yuhui; Hui, Dafeng; Wen, Meili

2014-01-01

For the purposes of forest restoration, carbon (C) fixation, and economic improvement, eucalyptus (Eucalyptus urophylla) has been widely planted in South China. The understory of eucalyptus plantations is often occupied by a dense community of the fern Dicranopteris dichotoma, which intercepts tree canopy leaf litter before it reaches the ground. To understand the effects of this interception of litterfall on C cycling in eucalyptus plantations, we quantified the mass of intercepted litter and the influences of litterfall interception on litter decomposition and soil respiration. The total mass of E. urophylla litterfall collected on the understory was similar to that collected by the traditional litter trap method. All of the eucalyptus litterfall is intercepted by the D. dichotoma canopy. Of the litterfall that was intercepted by D. dichotoma, 20–40% and 60–80% was intercepted by the top (50–100 cm) and bottom (0–50 cm) of the understory canopy, respectively. Intercepted litterfall decomposed faster at the bottom of understory canopy (at the base of the plants) than at the top, and decomposition was slower on the soil surface in the absence of understory than on any location in the understory canopy. Soil respiration was highest when both the understory and litter were present and was lowest when both the understory and litter were absent. These results indicate that litterfall interception changed carbon flow between aboveground and belowground through litter decomposition and soil respiration, which changed carbon cycling in eucalyptus plantations. The effects of the understory on litter decomposition and soil respiration should be considered in ecosystem carbon models. PMID:24959853

The effect of vegetation height and biomass on the sediment budget of a European saltmarsh

NASA Astrophysics Data System (ADS)

Reef, Ruth; Schuerch, Mark; Christie, Elizabeth K.; Möller, Iris; Spencer, Tom

2018-03-01

Sediment retention in saltmarshes is often attributed to the presence of vegetation, which enhances accretion by slowing water flow, reduces erosion by attenuating wave energy and increases surface stability through the presence of organic matter. Saltmarsh vegetation morphology varies considerably on a range of spatial and temporal scales, but the effect of different above ground morphologies on sediment retention is not well characterised. Understanding the biophysical interaction between the canopy and sediment trapping in situ is important for improving numerical shoreline models. In a novel field flume study, we measured the effect of vegetation height and biomass on sediment trapping using a mass balance approach. Suspended sediment profilers were placed at both openings of a field flume built across-shore on the seaward boundary of an intertidal saltmarsh in the Dengie Peninsula, UK. Sequential removal of plant material from within the flume resulted in incremental loss of vegetation height and biomass. The difference between the concentration of suspended sediment measured at each profiler was used to determine the sediment budget within the flume. Deposition of material on the plant/soil surfaces within the flume occurred during flood tides, while ebb flow resulted in erosion (to a lesser degree) from the flume area, with a positive sediment budget of on average 6.5 g m-2 tide-1 with no significant relationship between sediment trapping efficiency and canopy morphology. Deposition (and erosion) rates were positively correlated to maximum inundation depth. Our results suggest that during periods of calm conditions, changes to canopy morphology do not result in significant changes in sediment budgets in marshes.

Thermal and flow analysis of the Fluor Daniel, Inc., Nuclear Material Storage Facility renovation design (initial 30% effort of Title 1)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Steinke, R.G.; Mueller, C.; Knight, T.D.

1998-03-01

The computational fluid dynamics code CFX4.2 was used to evaluate steady-state thermal-hydraulic conditions in the Fluor Daniel, Inc., Nuclear Material Storage Facility renovation design (initial 30% of Title 1). Thirteen facility cases were evaluated with varying temperature dependence, drywell-array heat-source magnitude and distribution, location of the inlet tower, and no-flow curtains in the drywell-array vault. Four cases of a detailed model of the inlet-tower top fixture were evaluated to show the effect of the canopy-cruciform fixture design on the air pressure and flow distributions.

Disentangling the long-term effects of disturbance on soil biogeochemistry in a wet tropical forest ecosystem.

PubMed

Gutiérrez Del Arroyo, Omar; Silver, Whendee L

2018-04-01

Climate change is increasing the intensity of severe tropical storms and cyclones (also referred to as hurricanes or typhoons), with major implications for tropical forest structure and function. These changes in disturbance regime are likely to play an important role in regulating ecosystem carbon (C) and nutrient dynamics in tropical and subtropical forests. Canopy opening and debris deposition resulting from severe storms have complex and interacting effects on ecosystem biogeochemistry. Disentangling these complex effects will be critical to better understand the long-term implications of climate change on ecosystem C and nutrient dynamics. In this study, we used a well-replicated, long-term (10 years) canopy and debris manipulation experiment in a wet tropical forest to determine the separate and combined effects of canopy opening and debris deposition on soil C and nutrients throughout the soil profile (1 m). Debris deposition alone resulted in higher soil C and N concentrations, both at the surface (0-10 cm) and at depth (50-80 cm). Concentrations of NaOH-organic P also increased significantly in the debris deposition only treatment (20-90 cm depth), as did NaOH-total P (20-50 cm depth). Canopy opening, both with and without debris deposition, significantly increased NaOH-inorganic P concentrations from 70 to 90 cm depth. Soil iron concentrations were a strong predictor of both C and P patterns throughout the soil profile. Our results demonstrate that both surface- and subsoils have the potential to significantly increase C and nutrient storage a decade after the sudden deposition of disturbance-related organic debris. Our results also show that these effects may be partially offset by rapid decomposition and decreases in litterfall associated with canopy opening. The significant effects of debris deposition on soil C and nutrient concentrations at depth (>50 cm), suggest that deep soils are more dynamic than previously believed, and can serve as sinks of C and nutrients derived from disturbance-induced pulses of organic matter inputs. © 2017 John Wiley & Sons Ltd.

Remote sensing-based characterization of land management and biophysical factors in grassland

NASA Astrophysics Data System (ADS)

Ramspott, Matthew E.

Land use and management are important factors influencing ecosystem functions, including the cycling of carbon (C) in plant/soil systems. Information about land use and management, needed to prioritize conservation efforts in managed grasslands of the Central Great Plains, can be obtained using remote sensing techniques, but this process is complex in grasslands because of the subtle class differences, large within-class variability, and complex seasonal changes in canopy spectral characteristics. In this study, time-series of remotely sensed data were used to derive vegetation index (VI) and image texture measures. The utility of these measures for classification of five managed grassland types was assessed using ANOVA and stepwise discriminant analysis methods. Image texture was found to improve the accuracy of classification by ˜13% over the use of VI alone. The optimal timing of data acquisition for classification with VI was found to be in April/May and in October; optimal timing for acquisition of texture was in June. Remotely sensed VI have been commonly used to model photosynthetic capacity and net primary production in ecosystems. Since VI theoretically assume canopy conditions of uniform geometry and greenness, seasonally variable management-induced changes in the grassland canopy can potentially influence the VI response and therefore the strength and stability of the model. This study examined the seasonal and inter-annual stability of the relationship between VI and photosynthetic capacity under both idealized and realized conditions. With regression analysis, the relationship between VI and field-measured estimates of photosynthetic capacity was established and evaluated. This work identified two types of management activity strongly influencing the stability of this relationship: (1) Conservation management, in which the vegetation is neither hayed nor grazed, results in accumulation of senescent canopy material and leads to lower than expected VI response; (2) Heavy grazing management leads to elevated levels of forb (non-grass species) cover in the canopy coupled with low photosynthetic capacity and high levels of bare ground, resulting in higher than expected VI response. When sites exhibiting these characteristics were removed, the relationship between VI and photosynthetic capacity was found to be stable seasonally and between years.

Insectivorous bats respond to vegetation complexity in urban green spaces.

PubMed

Suarez-Rubio, Marcela; Ille, Christina; Bruckner, Alexander

2018-03-01

Structural complexity is known to determine habitat quality for insectivorous bats, but how bats respond to habitat complexity in highly modified areas such as urban green spaces has been little explored. Furthermore, it is uncertain whether a recently developed measure of structural complexity is as effective as field-based surveys when applied to urban environments. We assessed whether image-derived structural complexity (MIG) was as/more effective than field-based descriptors in this environment and evaluated the response of insectivorous bats to structural complexity in urban green spaces. Bat activity and species richness were assessed with ultrasonic devices at 180 locations within green spaces in Vienna, Austria. Vegetation complexity was assessed using 17 field-based descriptors and by calculating the mean information gain (MIG) using digital images. Total bat activity and species richness decreased with increasing structural complexity of canopy cover, suggesting maneuverability and echolocation (sensorial) challenges for bat species using the canopy for flight and foraging. The negative response of functional groups to increased complexity was stronger for open-space foragers than for edge-space foragers. Nyctalus noctula , a species foraging in open space, showed a negative response to structural complexity, whereas Pipistrellus pygmaeus , an edge-space forager, was positively influenced by the number of trees. Our results show that MIG is a useful, time- and cost-effective tool to measure habitat complexity that complemented field-based descriptors. Response of insectivorous bats to structural complexity was group- and species-specific, which highlights the need for manifold management strategies (e.g., increasing or reinstating the extent of ground vegetation cover) to fulfill different species' requirements and to conserve insectivorous bats in urban green spaces.

Effects of elevated atmospheric CO2 and tropospheric O3 on tree branch growth and implications for hydraulic budgeting

Treesearch

L. Rhea; J. King; Mark Kubiske; N. Saliendra; R. Teclaw

2010-01-01

The forest hydrologic budget may be impacted by increasing CO2 and tropospheric O3. Efficient means to quantify such effects are beneficial. We hypothesized that changes in the balance of canopy interception, stem flow, and through-fall in the presence of elevated CO2 and O3...

Characterization of air profiles impeded by plant canopies for a variable-rate air-assisted sprayer

USDA-ARS?s Scientific Manuscript database

The preferential design for variable-rate orchard and nursery sprayers relies on tree structure to control liquid and air flow rates. Demand for this advanced feature has been incremental as the public demand on reduction of pesticide use. A variable-rate, air assisted, five-port sprayer had been in...

Spatial Variability of Soil-Water Storage in the Southern Sierra Critical Zone Observatory: Measurement and Prediction

NASA Astrophysics Data System (ADS)

Oroza, C.; Bales, R. C.; Zheng, Z.; Glaser, S. D.

2017-12-01

Predicting the spatial distribution of soil moisture in mountain environments is confounded by multiple factors, including complex topography, spatial variably of soil texture, sub-surface flow paths, and snow-soil interactions. While remote-sensing tools such as passive-microwave monitoring can measure spatial variability of soil moisture, they only capture near-surface soil layers. Large-scale sensor networks are increasingly providing soil-moisture measurements at high temporal resolution across a broader range of depths than are accessible from remote sensing. It may be possible to combine these in-situ measurements with high-resolution LIDAR topography and canopy cover to estimate the spatial distribution of soil moisture at high spatial resolution at multiple depths. We study the feasibility of this approach using six years (2009-2014) of daily volumetric water content measurements at 10-, 30-, and 60-cm depths from the Southern Sierra Critical Zone Observatory. A non-parametric, multivariate regression algorithm, Random Forest, was used to predict the spatial distribution of depth-integrated soil-water storage, based on the in-situ measurements and a combination of node attributes (topographic wetness, northness, elevation, soil texture, and location with respect to canopy cover). We observe predictable patterns of predictor accuracy and independent variable ranking during the six-year study period. Predictor accuracy is highest during the snow-cover and early recession periods but declines during the dry period. Soil texture has consistently high feature importance. Other landscape attributes exhibit seasonal trends: northness peaks during the wet-up period, and elevation and topographic-wetness index peak during the recession and dry period, respectively.

The role of hydrodynamics in shaping the composition and architecture of epilithic biofilms in fluvial ecosystems.

PubMed

Risse-Buhl, Ute; Anlanger, Christine; Kalla, Katalin; Neu, Thomas R; Noss, Christian; Lorke, Andreas; Weitere, Markus

2017-12-15

Previous laboratory and on-site experiments have highlighted the importance of hydrodynamics in shaping biofilm composition and architecture. In how far responses to hydrodynamics can be found in natural flows under the complex interplay of environmental factors is still unknown. In this study we investigated the effect of near streambed turbulence in terms of turbulent kinetic energy (TKE) on the composition and architecture of biofilms matured in two mountainous streams differing in dissolved nutrient concentrations. Over both streams, TKE significantly explained 7% and 8% of the variability in biofilm composition and architecture, respectively. However, effects were more pronounced in the nutrient richer stream, where TKE significantly explained 12% and 3% of the variability in biofilm composition and architecture, respectively. While at lower nutrient concentrations seasonally varying factors such as stoichiometry of dissolved nutrients (N/P ratio) and light were more important and explained 41% and 6% of the variability in biofilm composition and architecture, respectively. Specific biofilm features such as elongated ripples and streamers, which were observed in response to the uniform and unidirectional flow in experimental settings, were not observed. Microbial biovolume and surface area covered by the biofilm canopy increased with TKE, while biofilm thickness and porosity where not affected or decreased. These findings indicate that under natural flows where near bed flow velocities and turbulence intensities fluctuate with time and space, biofilms became more compact. They spread uniformly on the mineral surface as a film of densely packed coccoid cells appearing like cobblestone pavement. The compact growth of biofilms seemed to be advantageous for resisting hydrodynamic shear forces in order to avoid displacement. Thus, near streambed turbulence can be considered as important factor shaping the composition and architecture of biofilms grown under natural flows. Copyright © 2017 Elsevier Ltd. All rights reserved.

Agroecology: Implications for plant response to climate change

USDA-ARS?s Scientific Manuscript database

Agricultural ecosystems (agroecosystems) represent the balance between the physiological responses of plants and plant canopies and the energy exchanges. Rising temperature and increasing CO2 coupled with an increase in variability of precipitation will create a complex set of interactions on plant ...

Comparing helicopter-borne profiling radar with airborne laser scanner data for forest structure estimation.

NASA Astrophysics Data System (ADS)

Piermattei, Livia; Hollaus, Markus; Pfeifer, Norbert; Chen, Yuwei; Karjalainen, Mika; Hakala, Teemu; Hyyppä, Juha; Wagner, Wolfgang

2017-04-01

Forests are complex ecosystems that show substantial variation with respect to climate, management regime, stand history, disturbance, and needs of local communities. The dynamic processes of growth and disturbance are reflected in the structural components of forests that include the canopy vertical structure and geometry (e.g. size, height, and form), tree position and species diversity. Current remote-sensing systems to measure forest structural attributes include passive optical sensors and active sensors. The technological capabilities of active remote sensing like the ability to penetrate the vegetation and provide information about its vertical structure has promoted an extensive use of LiDAR (Light Detection And Ranging) and radar (RAdio Detection And Ranging) system over the last 20 years. LiDAR measurements from aircraft (airborne laser scanning, ALS) currently represents the primary data source for three-dimensional information on forest vertical structure. Contrary, despite the potential of radar remote sensing, their use is not yet established in forest monitoring. In order to better understand the interaction of pulsed radar with the forest canopy, and to increase the feasibility of this system, the Finnish Geospatial Research Institute has developed a helicopter-borne profiling radar system, called TomoRadar. TomoRadar is capable of recording a canopy-penetrating profile of forests. To georeference the radar measurements the system was equipped with a global navigation satellite system and an inertial measurement unit with a centimeter level accuracy of the flight trajectory. The TomoRadar operates at Ku-band, (wave lengths λ 1.5cm) with two separated parabolic antennas providing co- and cross-polarization modes. The purpose of this work is to investigate the capability of the TomoRadar system, for estimating the forest vertical profile, terrain topography and tree height. We analysed 600 m TomoRadar crosspolarized (i.e. horizontal - vertical) profile, acquired in October 2016 over a boreal test site in Evo, Finland. The intensity of the reflected backscatter energy was used to measure the height canopy distribution within an individual footprint. As the intensity of the backscatter energy from the ground is exceeding the intensity from vegetation, the estimation of canopy height and the forest structure were based on i) a threshold between canopy and ground and ii) a peak analysis of the backscattering profile. ALS data collected simultaneously was used to validate the TomoRadar results (i.e. canopy height) and to obtain elevation ground truth. The first results show a high agreement between ALS and TomoRadar derived canopy heights. The derived knowledge about the energy distribution within the canopy height profile leads to an increased understanding of the interactions between the radar signal and the forest canopy and will support optimization of future radar systems with respect to forest structure observation.

Approximating Reflectance and Transmittance of Vegetation Using Multiple Spectral Invariants

NASA Astrophysics Data System (ADS)

Mottus, M.

2011-12-01

Canopy spectral invariants, eigenvalues of the radiative transfer equation and photon recollision probability are some of the new theoretical tools that have been applied in remote sensing of vegetation and atmosphere. The theoretical approach based on spectral invariants, informally also referred to as the p-theory, owns its attractivity to several factors. Firstly, it provides a rapid and physically-based way of describing canopy scattering. Secondly, the p-theory aims at parameterizing canopy structure in reflectance models using a simple and intuitive concept which can be applied at various structural levels, from shoot to tree crown. The theory has already been applied at scales from the molecular level to forest stands. The most important shortcoming of the p-theory lies in its inability to predict the directionality of scattering. The theory is currently based on only one physical parameter, the photon recollision probability p. It is evident that one parameter cannot contain enough information to reasonably predict the observed complex reflectance patterns produced by natural vegetation canopies. Without estimating scattering directionality, however, the theory cannot be compared with even the most simple (and well-tested) two-stream vegetation reflectance models. In this study, we evaluate the possibility to use additional parameters to fit the measured reflectance and transmittance of a vegetation stand. As a first step, the parameters are applied to separate canopy scattering into reflectance and transmittance. New parameters are introduced following the general approach of eigenvector expansion. Thus, the new parameters are coined higher-order spectral invariants. Calculation of higher-order invariants is based on separating first-order scattering from total scattering. Thus, the method explicitly accounts for different view geometries with different fractions of visible sunlit canopy (e.g., hot-spot). It additionally allows to produce different irradiation levels on leaf surfaces for direct and diffuse incidence, thus (in theory) allowing more accurate calculation of potential photosynthesis rates. Similarly to the p-theory, the use of multiple spectral invariants facilitates easy parametrization of canopy structure and scaling between different structural levels (leaf-shoot-stand). Spectral invariant-based remote sensing approaches are well suited for relatively large pixels even when no detailed ground truth information is available. In a case study, the theory of multiple spectral invariants was applied to measured canopy scattering. Spectral reflectance and transmittance measurements were carried out in gray alder (Alnus incana) plantation at Tartu Observatory, Estonia, in August 2006. The equations produced by the theory of spectral invariants were fitted to measured radiation fluxes. Preliminary results indicate that quantities with invariant-like behavior may indeed be used to approximate canopy scattering directionality.

Landscape-scale effects of fire severity on mixed-conifer and red fir forest structure in Yosemite National Park

USGS Publications Warehouse

Kane, Van R.; Lutz, James A.; Roberts, Susan L.; Smith, Douglas F.; McGaughey, Robert J.; Povak, Nicholas A.; Brooks, Matthew L.

2013-01-01

While fire shapes the structure of forests and acts as a keystone process, the details of how fire modifies forest structure have been difficult to evaluate because of the complexity of interactions between fires and forests. We studied this relationship across 69.2 km2 of Yosemite National Park, USA, that was subject to 32 fires ⩾40 ha between 1984 and 2010. Forests types included ponderosa pine (Pinus ponderosa), white fir-sugar pine (Abies concolor/Pinus lambertiana), and red fir (Abies magnifica). We estimated and stratified burned area by fire severity using the Landsat-derived Relativized differenced Normalized Burn Ratio (RdNBR). Airborne LiDAR data, acquired in July 2010, measured the vertical and horizontal structure of canopy material and landscape patterning of canopy patches and gaps. Increasing fire severity changed structure at the scale of fire severity patches, the arrangement of canopy patches and gaps within fire severity patches, and vertically within tree clumps. Each forest type showed an individual trajectory of structural change with increasing fire severity. As a result, the relationship between estimates of fire severity such as RdNBR and actual changes appears to vary among forest types. We found three arrangements of canopy patches and gaps associated with different fire severities: canopy-gap arrangements in which gaps were enclosed in otherwise continuous canopy (typically unburned and low fire severities); patch-gap arrangements in which tree clumps and gaps alternated and neither dominated (typically moderate fire severity); and open-patch arrangements in which trees were scattered across open areas (typically high fire severity). Compared to stands outside fire perimeters, increasing fire severity generally resulted first in loss of canopy cover in lower height strata and increased number and size of gaps, then in loss of canopy cover in higher height strata, and eventually the transition to open areas with few or no trees. However, the estimated fire severities at which these transitions occurred differed for each forest type. Our work suggests that low severity fire in red fir forests and moderate severity fire in ponderosa pine and white fir-sugar pine forests would restore vertical and horizontal canopy structures believed to have been common prior to the start of widespread fire suppression in the early 1900s. The fusion of LiDAR and Landsat data identified post-fire structural conditions that would not be identified by Landsat alone, suggesting a broad applicability of combining Landsat and LiDAR data for landscape-scale structural analysis for fire management.

The 1991 AVIRIS/POLDER experiment in Camargue, France

NASA Technical Reports Server (NTRS)

Baret, F.; Leprieur, C.; Jacquemoud, S.; Carrere, V.; Gu, X. F.; Steven, M.; Vanderbilt, V.; Hanocq, J. F.; Ustin, Susan L.; Rondeaux, G.

1992-01-01

Airborne campaigns during the eighties provided high spectral resolution data, collected with imaging instruments such as AIS, AVIRIS, FLI, CAESI, and ISM, in order to investigate the relationship with canopy biophysical characteristics. The statistical approaches used to analyze these data do not allow investigation of the causality and the applicability of the observed correlations. Further, statistical studies demonstrated the high degree of redundancy of the spectral information amongst many others. And for retrieving vegetation biophysical characteristics, few results demonstrate the real information gain attributable to the high spectral resolution capability as compared to the use of a few wide wavelength bands. With several new imaging spectrophotometers scheduled for launch during the next 10 years (MERIS, MODIS, HIRIS), progress in the description and understanding of the mechanisms that drive the spectral variation of canopy reflectance is required. Most of these new sensor systems will also have the capability to observe the target under differing view directions. The problem of the combination and the use of the synergy between both the spectral and the directional sources of canopy reflectance variations has to be addressed. Apart from the atmospheric effects, the spectral variation of the light reflected by canopies originates from the leaves, the soil or the other vegetation elements such as branches and fruits. At leaf level, both diffuse reflectance and transmittance may be simulated by simple models, although no accurate information exists on the absorption features of the biochemicals (except water) in the 900-2500nm wavelength range. Many models mimic the directional variability of canopy reflectance at a given wavelength. Combining a leaf spectral model with a canopy directional model provides a powerful tool to analyze this problem. Some of us have initiated such a study, but our approach and theory remain to be tested using canopy data with their complexity, associated experimental error, and atmospheric effects. The main objective of the 1990 POLDER/AVIRIS experiment in Camargue was to provide a consistent data set over various canopies in order to test the applicability of the theory. The experiment, part of the 1991 MAC Europe experiment, involved simultaneous data collection using two sensors: AVIRIS and POLDER which measures the bidirectional and polarization properties of the targets at 670 and 880nm wavebands.

Novel throughput phenotyping platforms in plant genetic studies.

PubMed

Montes, Juan M; Melchinger, Albrecht E; Reif, Jochen C

2007-10-01

Unraveling the genetic basis of complex traits in plants is limited by the lack of appropriate phenotyping platforms that enable high-throughput screening of many genotypes in multilocation field trials. Near-infrared spectroscopy on agricultural harvesters and spectral reflectance of plant canopies have recently been reported as promising components of novel phenotyping platforms. Understanding the genetic basis of complex traits is now within reach with the use of these new techniques.

Modeling Water and Nutrient Transport through the Soil-Root-Canopy Continuum: Explicitly Linking the Below- and Above-Ground Processes

NASA Astrophysics Data System (ADS)

Kumar, P.; Quijano, J. C.; Drewry, D.

2010-12-01

Vegetation roots provide a fundamental link between the below ground water and nutrient dynamics and above ground canopy processes such as photosynthesis, evapotranspiration and energy balance. The “hydraulic architecture” of roots, consisting of the structural organization of the root system and the flow properties of the conduits (xylem) as well as interfaces with the soil and the above ground canopy, affect stomatal conductance thereby directly linking them to the transpiration. Roots serve as preferential pathways for the movement of moisture from wet to dry soil layers during the night, both from upper soil layer to deeper layers during the wet season (‘hydraulic descent’) and vice-versa (‘hydraulic lift’) as determined by the moisture gradients. The conductivities of transport through the root system are significantly, often orders of magnitude, larger than that of the surrounding soil resulting in movement of soil-moisture at rates that are substantially larger than that through the soil. This phenomenon is called hydraulic redistribution (HR). The ability of the deep-rooted vegetation to “bank” the water through hydraulic descent during wet periods for utilization during dry periods provides them with a competitive advantage. However, during periods of hydraulic lift these deep-rooted trees may facilitate the growth of understory vegetation where the understory scavenges the hydraulically lifted soil water. In other words, understory vegetation with relatively shallow root systems have access to the banked deep-water reservoir. These inter-dependent root systems have a significant influence on water cycle and ecosystem productivity. HR induced available moisture may support rhizosphere microbial and mycorrhizal fungi activities and enable utilization of heterogeneously distributed water and nutrient resources To capture this complex inter-dependent nutrient and water transport through the soil-root-canopy continuum we present modeling results using coupled partial differential equations of transport in soils and roots along with that for nutrient dynamics. We study the feedbkack of HR on the dynamics of water and nitrogen cycling in the soil and how these dynamics influence root water and nitrogen uptake and consequently carbon assimilation by the canopy. The forcing data is obtained from the Ameriflux Tower located in Blodgett Forest, Sierra Nevada, California. We consider single-species (Ponderosa Pine) and multi-species (overstory Ponderosa Pine and understory shrubs) interaction. When single species is considered, the near surface soil-moisture available from HR during dry summer season is an important source of evaporation and contributes significantly to the total ET flux. However, when multi-species interactions are taken into account, the soil-water from the HR becomes an important source of transpiration from the understory. The results also show that passive plant nitrogen uptake is higher when HR is present and it is critical for sustaining expected rates of carbon assimilation.

Parametrizing Evaporative Resistance for Heterogeneous Sparse Canopies through Novel Wind Tunnel Experimentation

NASA Astrophysics Data System (ADS)

Sloan, B.; Ebtehaj, A. M.; Guala, M.

2017-12-01

The understanding of heat and water vapor transfer from the land surface to the atmosphere by evapotranspiration (ET) is crucial for predicting the hydrologic water balance and climate forecasts used in water resources decision-making. However, the complex distribution of vegetation, soil and atmospheric conditions makes large-scale prognosis of evaporative fluxes difficult. Current ET models, such as Penman-Monteith and flux-gradient methods, are challenging to apply at the microscale due to ambiguity in determining resistance factors to momentum, heat and vapor transport for realistic landscapes. Recent research has made progress in modifying Monin-Obukhov similarity theory for dense plant canopies as well as providing clearer description of diffusive controls on evaporation at a smooth soil surface, which both aid in calculating more accurate resistance parameters. However, in nature, surfaces typically tend to be aerodynamically rough and vegetation is a mixture of sparse and dense canopies in non-uniform configurations. The goal of our work is to parameterize the resistances to evaporation based on spatial distributions of sparse plant canopies using novel wind tunnel experimentation at the St. Anthony Falls Laboratory (SAFL). The state-of-the-art SAFL wind tunnel was updated with a retractable soil box test section (shown in Figure 1), complete with a high-resolution scale and soil moisture/temperature sensors for recording evaporative fluxes and drying fronts. The existing capabilities of the tunnel were used to create incoming non-neutral stability conditions and measure 2-D velocity fields as well as momentum and heat flux profiles through PIV and hotwire anemometry, respectively. Model trees (h = 5 cm) were placed in structured and random configurations based on a probabilistic spacing that was derived from aerial imagery. The novel wind tunnel dataset provides the surface energy budget, turbulence statistics and spatial soil moisture data under varying atmospheric stability for each sparse canopy configuration. We will share initial data results and progress toward the development of new parametrizations that can account for the evolution of a canopy roughness sublayer on the momentum, heat and vapor resistance terms as a function of a stochastic representation of canopy spacing.

Beyond edge effects: landscape controls on forest structure in the southeastern US

NASA Astrophysics Data System (ADS)

Fagan, M. E.; Morton, D. C.; Cook, B.; Masek, J. G.; Zhao, F. A.; Nelson, R.; Huang, C.

2016-12-01

The structure of forest canopies (i.e., their height and complexity) is known to be influenced by a variety of factors, including forest age, species composition, disturbance, edaphic and topographical conditions, and exposure to edge environments. The combined impact of each of these factors on canopy structure is not well characterized for most forest ecosystems, however, which limits our ability to predict the regional impacts of forest fragmentation. The objective of this study was to elucidate the main biophysical drivers of canopy structure across two dominant ecosystems in the southeastern U.S: natural mixed deciduous forests, and industrial conifer plantations. We analyzed spatial changes in canopy structure along aerial transects of LiDAR data ( 3,000 km in all). High-resolution (1 m) LiDAR data from Goddard's LiDAR, Hyperspectral, and Thermal Airborne Imager (G-LiHT) were combined with time series of Landsat imagery to quantify forest type, age, composition, and fragmentation. Forest structural metrics (height, gap fraction, and canopy roughness) were examined across forest types, ages, topography, and decreasing edge exposure. We hypothesized that 1) structural edge effects would be weak in both natural and plantation forest types, and 2) age, composition, and topography would be the dominant influences on natural forest structure. We analyzed all large (>4 ha) fragments from the 8562 distinct forests measured during G-LiHT data collections in 2011 across the southeastern U.S. In general, the relationship between forest structural metrics and edge exposure was highly variable in both natural forests and plantations. However, variability in all structural metrics decreased with distance from an edge. Forest age and topography were strong predictors of canopy structure in natural forests. However plantations tended to be located in sites with limited topographical variation, and thinning disturbances of conifer plantations decreased the strength of the age-structure relationship. We found that canopy structure in our region is influenced by edge effects, but other factors played a larger role in determining forest characteristics. Our results highlight the importance of endogenous, stand-specific processes for forest structure, biomass, and biodiversity in the southeastern U.S.

Numerical Simulation of Dispersion from Urban Greenhouse Gas Sources

NASA Astrophysics Data System (ADS)

Nottrott, Anders; Tan, Sze; He, Yonggang; Winkler, Renato

2017-04-01

Cities are characterized by complex topography, inhomogeneous turbulence, and variable pollutant source distributions. These features create a scale separation between local sources and urban scale emissions estimates known as the Grey-Zone. Modern computational fluid dynamics (CFD) techniques provide a quasi-deterministic, physically based toolset to bridge the scale separation gap between source level dynamics, local measurements, and urban scale emissions inventories. CFD has the capability to represent complex building topography and capture detailed 3D turbulence fields in the urban boundary layer. This presentation discusses the application of OpenFOAM to urban CFD simulations of natural gas leaks in cities. OpenFOAM is an open source software for advanced numerical simulation of engineering and environmental fluid flows. When combined with free or low cost computer aided drawing and GIS, OpenFOAM generates a detailed, 3D representation of urban wind fields. OpenFOAM was applied to model scalar emissions from various components of the natural gas distribution system, to study the impact of urban meteorology on mobile greenhouse gas measurements. The numerical experiments demonstrate that CH4 concentration profiles are highly sensitive to the relative location of emission sources and buildings. Sources separated by distances of 5-10 meters showed significant differences in vertical dispersion of plumes, due to building wake effects. The OpenFOAM flow fields were combined with an inverse, stochastic dispersion model to quantify and visualize the sensitivity of point sensors to upwind sources in various built environments. The Boussinesq approximation was applied to investigate the effects of canopy layer temperature gradients and convection on sensor footprints.

Effects of trees on mean wind, turbulence and momentum exchange within and above a real urban environment

NASA Astrophysics Data System (ADS)

Giometto, M. G.; Christen, A.; Egli, P. E.; Schmid, M. F.; Tooke, R. T.; Coops, N. C.; Parlange, M. B.

2017-08-01

Large-eddy simulations (LES) are used to gain insight into the effects of trees on turbulence, aerodynamic parameters, and momentum transfer rates characterizing the atmosphere within and above a real urban canopy. Several areas are considered that are part of a neighborhood in the city of Vancouver, BC, Canada where a small fraction of trees are taller than buildings. In this area, eight years of continuous wind and turbulence measurements are available from a 30 m meteorological tower. Data from airborne light detection and ranging (LiDAR) are used to represent both buildings and vegetation at the LES resolution. In the LES algorithm, buildings are accounted through an immersed boundary method, whereas vegetation is parameterized via a location-specific leaf area density. LES are performed including and excluding vegetation from the considered urban areas, varying wind direction and leaf area density. Surface roughness lengths (z0) from both LES and tower measurements are sensitive to the 0 ≤ LAI /λfb < 3 parameter, where LAI is the leaf area index and λfb is the frontal area fraction of buildings characterizing a given canopy. For instance, tower measurements predict a 19% seasonal increase in z0, slightly lower than the 27% increase featured by LES for the most representative canopy (leaves-off LAI / λfSUP>b = 0.74 , leaves-on LAI /λfb = 2.24). Removing vegetation from such a canopy would cause a dramatic drop of approximately 50% in z0 when compared to the reference summer value. The momentum displacement height (d) from LES also consistently increases as LAI / λfb increases, due in large part to the disproportionate amount of drag that the (few) relatively taller trees exert on the flow. LES and measurements both predict an increase in the ratio of turbulent to mean kinetic energy (TKE/MKE) at the tower sampling height going from winter to summer, and LES also show how including vegetation results in a more (positive) negatively skewed (horizontal) vertical velocity distribution - reflecting a more intermittent velocity field which favors sweep motions when compared to ejections. Within the urban canopy, the effects of trees are twofold: on one hand, they act as a direct momentum sink for the mean flow; on the other, they reduce downward turbulent transport of high-momentum fluid, significantly reducing the wind intensity at the heights where people live and buildings consume energy.

On Wind Forces in the Forest-Edge Region During Extreme-Gust Passages and Their Implications for Damage Patterns

NASA Astrophysics Data System (ADS)

Gromke, Christof; Ruck, Bodo

2018-03-01

A damage pattern that is occasionally found after a period of strong winds shows an area of damaged trees inside a forest stand behind an intact stripe of trees directly at the windward edge. In an effort to understand the mechanism leading to this damage pattern, wind loading in the forest-edge region during passages of extreme gusts with different characteristics are investigated using a scaled forest model in the wind tunnel. The interaction of a transient extreme gust with the stationary atmospheric boundary layer (ABL) as a background flow at the forest edge leads to the formation of a vortex at the top of the canopy. This vortex intensifies when travelling downstream and subsequently deflects high-momentum air from above the canopy downwards resulting in increased wind loading on the tree crowns. Under such conditions, the decrease in wind loading in the streamwise direction can be relatively weak compared to stationary ABL approach flows. The resistance of trees with streamwise distance from the forest edge, however, is the result of adaptive growth to wind loading under stationary flow conditions and shows a rapid decline within two to three tree heights behind the windward edge. For some of the extreme gusts realized, an exceedance of the wind loading over the resistance of the trees is found at approximately three tree heights behind the forest edge, suggesting that the damage pattern described above can be caused by the interaction of a transient extreme gust with the stationary ABL flow.

Utility of a thermal-based two-source energy balance model for estimating surface fluxes over complex landscapes

USDA-ARS?s Scientific Manuscript database

Many landscapes are comprised of a variety of vegetation types with different canopy structure, rooting depth, physiological characteristics, including response to environmental stressors, etc. Even in agricultural regions, different management practices, including crop rotations, irrigation schedu...

A Thermal-based Two-Source Energy Balance Model for Estimating Evapotranspiration over Complex Canopies

USDA-ARS?s Scientific Manuscript database

Land surface temperature (LST) provides valuable information for quantifying root-zone water availability, evapotranspiration (ET) and crop condition as well as providing useful information for constraining prognostic land surface models. This presentation describes a robust but relatively simple LS...

Ground-Level Digital Terrain Model (DTM) Construction from Tandem-X InSAR Data and Worldview Stereo-Photogrammetric Images

NASA Technical Reports Server (NTRS)

Lee, Seung-Kuk; Fatoyinbo, Temilola; Lagomasino, David; Osmanoglu, Batuhan; Feliciano, Emanuelle

2016-01-01

The ground-level digital elevation model (DEM) or digital terrain model (DTM) information are invaluable for environmental modeling, such as water dynamics in forests, canopy height, forest biomass, carbon estimation, etc. We propose to extract the DTM over forested areas from the combination of interferometric complex coherence from single-pass TanDEM-X (TDX) data at HH polarization and Digital Surface Model (DSM) derived from high-resolution WorldView (WV) image pair by means of random volume over ground (RVoG) model. The RVoG model is a widely and successfully used model for polarimetric SAR interferometry (Pol-InSAR) technique for vertical forest structure parameter retrieval [1][2][3][4]. The ground-level DEM have been obtained by complex volume decorrelation in the RVoG model with the DSM using stereo-photogrammetric technique. Finally, the airborne lidar data were used to validate the ground-level DEM and forest canopy height results.

Quadrupedal locomotor performance in two species of arboreal squirrels: predicting energy savings of gliding

Treesearch

Elizabeth A. Flaherty; Merav Ben-David; Winston P. Smith

2010-01-01

Gliding allows mammals to exploit canopy habitats of old-growth forests possibly as a means to save energy. To assess costs of quadrupedal locomotion for a gliding arboreal mammal, we used open-flow respirometry and a variable-speed treadmill to measure oxygen consumption and to calculate cost of transport, excess exercise oxygen consumption, and excess post-exercise...

Experimental evidence of two mechanisms coupling leaf-level C assimilation to rhizosphere CO2 release

Treesearch

Zachary Kayler; Claudia Keitel; Kirstin Jansen; Arthur Gessler

2017-01-01

The time span needed for carbon fixed by plants to induce belowground responses of root and rhizosphere microbial metabolic processing is of high importance for quantifying the coupling between plant canopy physiology and soil biogeochemistry, but recent observations of a rapid link cannot be explained by new assimilate transport by phloem mass flow alone. We performed...

Finescale turbulence and seabed scouring around pneumatophores in a wave-exposed mangrove forest

NASA Astrophysics Data System (ADS)

Mullarney, J. C.; Norris, B. K.; Henderson, S. M.; Bryan, K. R.

2015-12-01

Coastal mangroves provide a barrier between the coast and lower energy intertidal environments. The presence of mangrove roots (pneumatophores) alters local hydrodynamics by slowing currents, dissipating waves, enhancing within-canopy turbulence, and introducing significant spatial variability to the flow, particularly on the stem scale. To date, limited measurements exist within pneumatophore regions owing to the difficulties of measuring on sufficiently small scales. Hence, little is known about the turbulence controlling sediment transport within these regions. We report unique field observations near the seaward edge of a mangrove forest in the Mekong Delta, Vietnam. This forest is exposed to moderate wave energy (maximum heights of around 1 m), with waves observed to propagate and break up to 100 m inside the forest. Our measurements focus on a rapidly prograding area with a relatively sandy substrate and a gentle topographic slope. We resolved millimeter-scale turbulent flows within and above the pneumatophore canopy. Precise measurements of vegetation densities as a function of height were obtained using photogrammetry techniques. The dissipation rate of turbulent kinetic energy was enhanced at the canopy edge (ɛ ~ 10-4 W/kg), and decreased with distance into the forest (ɛ ~ 10-5 W/kg), although rates remained elevated above values measured on the tidal flat immediately offshore of the mangroves (ɛ ~ 10-6 W/kg). The dependence of turbulence on vegetation characteristics and on the stage of the tidal cycle is explored. The hydrodynamic measurements are then linked with changes in bathymetric features noted after a large wave event. Finer mud sediments were deposited outside the forest on the intertidal mudflat, whereas sandy sediments in the fringe region were significant scoured around regions of dense pneumatophores, and sediment mounds developed in the gaps between pneumatophores.

Stable Stratification Effects on Flow and Pollutant Dispersion in Boundary Layers Entering a Generic Urban Environment

NASA Astrophysics Data System (ADS)

Tomas, J. M.; Pourquie, M. J. B. M.; Jonker, H. J. J.

2016-05-01

Large-eddy simulations (LES) are used to investigate the effect of stable stratification on rural-to-urban roughness transitions. Smooth-wall turbulent boundary layers are subjected to a generic urban roughness consisting of cubes in an in-line arrangement. Two line sources of pollutant are added to investigate the effect on pollutant dispersion. Firstly, the LES method is validated with data from wind-tunnel experiments on fully-developed flow over cubical roughness. Good agreement is found for the vertical profiles of the mean streamwise velocity component and mean Reynolds stress. Subsequently, roughness transition simulations are done for both neutral and stable conditions. Results are compared with fully-developed simulations with conventional double-periodic boundary conditions. In stable conditions, at the end of the domain the streamwise velocity component has not yet reached the fully-developed state even though the surface forces are nearly constant. Moreover, the internal boundary layer is shallower than in the neutral case. Furthermore, an investigation of the turbulence kinetic energy budget shows that the buoyancy destruction term is reduced in the internal boundary layer, above which it is equal to the undisturbed (smooth wall) value. In addition, in stable conditions pollutants emitted above the urban canopy enter the canopy farther downstream due to decreased vertical mixing. Pollutants emitted below the top of the urban canopy are 85 % higher in concentration in stable conditions mostly due to decreased advection. If this is taken into account concentrations remain 17 % greater in stable conditions due to less rapid internal boundary-layer growth. Finally, it is concluded that in the first seven streets the vertical advective pollutant flux is significant, in contrast to the fully-developed case.

Airborne Lidar Measurements of Below-canopy Surface Water Height , Slope and Optical Properties in the Florida Everglades Shark River Slough

NASA Astrophysics Data System (ADS)

Dabney, P.; Harding, D. J.; Valett, S. R.; Yu, A. W.; Feliciano, E. A.; Neuenschwander, A. L.; Pitts, K.

2015-12-01

Determining the presence, persistence, optical properties and variation in height and slope of surface water beneath the dense canopies of flooded forests and mangrove stands could contribute to studies of the acquisition of water and nutrients by plant roots. NASA's airborne Slope Imaging Multi-polarization Photon-counting Lidar (SIMPL) provides unique capabilities that can identify below-canopy surface water, measure its height with respect to vegetation constituents with sub-decimeter precision and quantify its slope. It also provides information on canopy structure and closure, the water column extinction profile as a proxy for turbidity and water depth, with the penetration depth constrained by turbidity. It achieves this by using four laser beams operating at two wavelengths with measurements of water surface elevation at 1064 nm (near infrared) and water column properties at 532 nm (green), analogous to a bathymetric lidar. Importantly the instrument adds a polarimetry function, like some atmospheric lidars, which measures the amount of depolarization determined by the degree to which the plane-parallel transmitted laser pulse energy is converted to the perpendicular state. The degree of depolarization is sensitive to the number of photon multiple-scattering events. For the water surface, which is specular consisting only of single-scattering events, the near-infrared received signal retains the parallel polarization state. Absence of the perpendicular signal uniquely identifies surface water. Penetration of green light and the depth profile of photons converted to the perpendicular state compared to those in the parallel state is a measure of water-column multiple scattering, providing a relative measure of turbidity. The amount of photons reflected from the canopy versus the water provides a wavelength-dependent measure of canopy closure. By rapidly firing laser pulses (11,400 pulses per second) with a narrow width (1 nsec) and detecting single photons with 8 cm ranging precision, the surface altimetry data is acquired with very high spatial and vertical resolution. Examples of these capabilities will be shown using data collected in 2011 along and across the flow axis of the Florida Everglades Shark River Slough, targeting the slough's Long Term Ecology Research (LTER) field sites.

The behavior of the microwave emission of a conifer canopy during the fall-winter in Sodankylä, Finland

NASA Astrophysics Data System (ADS)

Li, Q.; Kelly, R. E. J.; Lemmetyinen, J.; Kontu, A.

2017-12-01

Spaceborne passive microwave (PM) systems are an important tool for estimating snow water equivalent (SWE) or snow depth (SD) in winter landscapes. However, because spaceborne radiometer footprints have a coarse spatial resolution, the measured upwelling brightness temperature (Tb) typically is a mixed signal propagated from multiple sources. Tree canopies can effectively attenuate microwave emission from the sub-canopy terrain beneath and can also have a strong emission signal. Therefore, these two combined observed processes decrease the sensitivity of the observed signal to SWE or SD. To evaluate the detailed behavior of the microwave emission from a forest landscape, the experiment focused on snow and vegetation radiative transfer processes was conducted at an established field site operated by the Finnish Meteorological Institute's Arctic Research Station in Sodankylä, Finland. In this experiment, downwelling Tbs from a target tree (Scots pine) was measured by an multi-frequency, dual polarization radiometer from Septermber 2016 to March 2017. A dendrometer and thermistor installed on the tree trunk at the height of 2 meters and 4 meters measured the sap flow and skin temperature of the tree. An adjacent weather station measured the air temperature. Snow cover conditions of the canopy was determined by an assessment web camera image time series. The three main findings are that first, the emissivity was positively correlated with tree skin temperatures below 0°C, but not when temperatures were at or greater than than 0°C. Furthermore, lower frequency channel observations were more sensitive to these physical temperatures than higher frequencies. Second, the Tb difference between horizontal and vertical polarizations were also negatively correlated with physical temperatures less than 0°C, but not when the physical temperatures were greater than 0°C. In addition, the Tb polarization differences of the lower frequency channels are more sensitive to temperature than for the higher frequency channels. Third, although the snow on the canopy can influence the microwave Tb response, this influence was found to be relatively small compared with other factors, suggesting that the difference of the canopy Tbs during the snow-covered and no-snow-covered periods were not statistically significant.

Biogenic Emission Inventories: Scaling Local Biogenic Measurements to Regions

NASA Astrophysics Data System (ADS)

Lamb, B.; Pressley, S.; Westberg, H.; Guenther, A.

2002-12-01

Biogenic Hydrocarbons, such as isoprene, are important trace gas species that are naturally emitted by vegetation and that affect the oxidative capacity of the atmosphere. Biogenic emissions are regulated by many environmental variables; the most important variables are thought to be temperature and light. Long-term isoprene flux measurements are useful for verifying existing canopy models and exploring other correlations between isoprene fluxes and environmental parameters. Biogenic Emission Models, such as BEIS (Biogenic Emission Inventory System) rely on above canopy environmental parameters and below canopy scaling factors to estimate canopy scale biogenic hydrocarbon fluxes. Other models, which are more complex, are coupled micrometeorological and physiological modules that provide feedback mechanisms present in a canopy environment. These types of models can predict biogenic emissions well, however, the required input is extensive, and for regional applications, they can be cumbersome. This paper presents analyses based on long-term isoprene flux measurements that have been collected since 1999 at the AmeriFlux site located at the University of Michigan Biological Station (UMBS) as part of the Program for Research on Oxidants: PHotochemistry, Emissions, and Transport (PROPHET). The goals of this research were to explore a potential relationship between the surface energy budget (primarily sensible heat flux) and isoprene emissions. Our hypothesis is that the surface energy flux is a better model parameter for isoprene emissions at the canopy scale than temperature and light levels, and the link to the surface energy budget will provide a significant improvement in isoprene emission models. Preliminary results indicate a significant correlation between daily isoprene emissions and sensible heat fluxes for a predominantly aspen/oak stand located in northern Michigan. Since surface energy budgets are an integral part of mesoscale meteorological models, this could potentially be a useful tool for including biogenic emissions into regional atmospheric models. Comparison of measured isoprene fluxes with current BEIS estimates will also be shown as an example of where emission inventories currently stand.

Curating and Preserving the Big Canopy Database System: an Active Curation Approach using SEAD

NASA Astrophysics Data System (ADS)

Myers, J.; Cushing, J. B.; Lynn, P.; Weiner, N.; Ovchinnikova, A.; Nadkarni, N.; McIntosh, A.

2015-12-01

Modern research is increasingly dependent upon highly heterogeneous data and on the associated cyberinfrastructure developed to organize, analyze, and visualize that data. However, due to the complexity and custom nature of such combined data-software systems, it can be very challenging to curate and preserve them for the long term at reasonable cost and in a way that retains their scientific value. In this presentation, we describe how this challenge was met in preserving the Big Canopy Database (CanopyDB) system using an agile approach and leveraging the Sustainable Environment - Actionable Data (SEAD) DataNet project's hosted data services. The CanopyDB system was developed over more than a decade at Evergreen State College to address the needs of forest canopy researchers. It is an early yet sophisticated exemplar of the type of system that has become common in biological research and science in general, including multiple relational databases for different experiments, a custom database generation tool used to create them, an image repository, and desktop and web tools to access, analyze, and visualize this data. SEAD provides secure project spaces with a semantic content abstraction (typed content with arbitrary RDF metadata statements and relationships to other content), combined with a standards-based curation and publication pipeline resulting in packaged research objects with Digital Object Identifiers. Using SEAD, our cross-project team was able to incrementally ingest CanopyDB components (images, datasets, software source code, documentation, executables, and virtualized services) and to iteratively define and extend the metadata and relationships needed to document them. We believe that both the process, and the richness of the resultant standards-based (OAI-ORE) preservation object, hold lessons for the development of best-practice solutions for preserving scientific data in association with the tools and services needed to derive value from it.

Cloud water interception and canopy water balance in the Hawaiian Islands: preliminary results and emerging patterns

NASA Astrophysics Data System (ADS)

Tseng, H.; Giambelluca, T. W.; DeLay, J. K.; Nullet, M.

2017-12-01

Steep climate gradients and diverse ecosystems make the Hawaiian Islands an ideal laboratory for ecohydrological experiments. Researchers are able to control physical and ecological variables, which is difficult for most environmental studies, by selecting sites along these gradients. Tropical montane forests, especially those situated in the cloud zone, are known to improve recharge and sustain baseflow. This is probably the result of frequent and persistent fog characteristic to these systems. During fog events, evapotranspiration is suppressed due to high humidity and reduced solar radiation. Moreover, cloud water interception by the forest canopy can produce fog drip and contribute significantly to the local water budget. Because the interception process is a complex interaction between the atmosphere and the vegetation, the effects of the meteorological conditions and canopy characteristics are equally important and sometimes hard to separate. This study aims to examine patterns in cloud water interception and canopy water balance across five tropical montane forest sites on three of the main islands of Hawaii. The sites cover a range of elevations between 1100- 2114 m, annual rainfall between 1155-3375 mm, and different dominant plant species with canopy heights ranging from 1.5 m to 30 m. We investigate the effect of climatic factors by comparing passive fog gauge measurements and other meteorological variables, then examine the differences in canopy water balance by comparing throughfall and stemflow measurements at these sites. While this study is ongoing, we present the first few months of field observations and the results of preliminary analyses. This study will improve understanding of how large-scale climate and vegetation factors interact to control cloud water interception and will inform ongoing watershed management. This is particularly important for oceanic islands such as Hawaii because they rely on precipitation entirely for water supply and are, therefore, vulnerable to impacts of altered ecohydrological functioning due to climate and land cover changes.

A criterion for delimiting active periods within turbulent flows

NASA Astrophysics Data System (ADS)

Keylock, C. J.

2008-06-01

Delimiting effectively the extent of the major motions in atmospheric, tidal and fluvial turbulent flows is an important task for studies of mixing and particle transport. The most common method for this (quadrant analysis) is closely linked to the turbulent stresses but subdivides active periods in the flow into separate events. A method based on the pointwise Hölder characteristics of the velocity data is introduced in this paper and applied to extract the whole duration of the active periods, within which turbulence intensities and stresses are high for some of the time. The cross-correlation structure of the Hölder series permits a simple threshold to be adopted. The technique is tested on data from a turbulent wake in a wind tunnel and flow over a forest canopy.

Final Programmatic Environmental Assessment for Test Area C-74 Complex, Eglin Air Force Base, Florida

DTIC Science & Technology

2003-08-18

Sarracenis purpurea Green Anole Anolis carolinensis Red Titi Cyrilla racemiflora Garter Snake Thamnophis sirtalis Tulip Poplar Liriodendrom...Tephrosia mohrii) Eglin’s open canopy Sandhills and upland pine forest Sweet Pitcher Plant ( Sarracenia rubra) Wet flatwoods, wet prairies, and baygalls

Modelling the effect of wheat canopy architecture as affected by sowing density on Septoria tritici epidemics using a coupled epidemic–virtual plant model

PubMed Central

Baccar, Rim; Fournier, Christian; Dornbusch, Tino; Andrieu, Bruno; Gouache, David; Robert, Corinne

2011-01-01

Background and Aims The relationship between Septoria tritici, a splash-dispersed disease, and its host is complex because of the interactions between the dynamic plant architecture and the vertical progress of the disease. The aim of this study was to test the capacity of a coupled virtual wheat–Septoria tritici epidemic model (Septo3D) to simulate disease progress on the different leaf layers for contrasted sowing density treatments. Methods A field experiment was performed with winter wheat ‘Soissons’ grown at three contrasted densities. Plant architecture was characterized to parameterize the wheat model, and disease dynamic was monitored to compare with simulations. Three simulation scenarios, differing in the degree of detail with which plant variability of development was represented, were defined. Key Results Despite architectural differences between density treatments, few differences were found in disease progress; only the lower-density treatment resulted in a slightly higher rate of lesion development. Model predictions were consistent with field measurements but did not reproduce the higher rate of lesion progress in the low density. The canopy reconstruction scenario in which inter-plant variability was taken into account yielded the best agreement between measured and simulated epidemics. Simulations performed with the canopy represented by a population of the same average plant deviated strongly from the observations. Conclusions It was possible to compare the predicted and measured epidemics on detailed variables, supporting the hypothesis that the approach is able to provide new insights into the processes and plant traits that contribute to the epidemics. On the other hand, the complex and dynamic responses to sowing density made it difficult to test the model precisely and to disentangle the various aspects involved. This could be overcome by comparing more contrasted and/or simpler canopy architectures such as those resulting from quasi-isogenic lines differing by single architectural traits. PMID:21724656

More than just drought: complexity of recruitment patterns in Mediterranean forests.

PubMed

Granda, Elena; Escudero, Adrián; Valladares, Fernando

2014-12-01

Understanding community dynamics during early life stages of trees is critical for the prediction of future species composition. In Mediterranean forests drought is a major constraint for regeneration, but likely not the only factor determining the observed spatial patterns. We carried out a sowing experiment aimed at identifying main filters during seed-seedling transition. Specifically, we studied seed fate (predation, fungi infection, emergence) and subsequent seedling performance (mortality during the first summer and overall recruitment after 2 years) of four co-occurring Mediterranean tree species (Quercus ilex, Quercus faginea, Juniperus thurifera, Pinus nigra). We related these processes to the dominant species composition, microhabitat heterogeneity, herb cover and seed mass. The identity of the dominant species in the forest canopy was more important for recruitment than the forest canopy being dominated by conspecific vs. heterospecific species. The patterns we found suggest that biotic interactions such as facilitation (lower mortality under the canopies) and herb competition (during emergence of J. thurifera) are relevant during recruitment. Moreover, our results pointed to ontogenetic conflicts regarding the seed mass of Q. faginea and to density-dependent seed mortality for Q. ilex, rarely described in Mediterranean ecosystems. We propose that our study species experience population growth in forests dominated by heterospecifics where the recruitment success depends on habitat heterogeneity and on moderated biotic and abiotic stresses created by each species. Our results reveal patterns and mechanisms involved in recruitment constraints that add complexity to the well-known drought-related processes in Mediterranean ecosystems.

Near-continuous thermal monitoring of a diverse tropical forest canopy

NASA Astrophysics Data System (ADS)

Pau, S.; Still, C. J.; Kim, Y.; Detto, M.

2015-12-01

Tropical species may be highly sensitive to temperature increases associated with climate change because of their narrow thermal tolerances. Recent work has highlighted the importance of temperature in tropical forest function, however most studies use air temperature measurements from sparse meteorological stations even though surface temperatures are known to deviate from air temperatures. Tropical organisms exist in microclimates that are highly variable in space and time and not easily measured in natural environments. This is in part because of the complex structure of tropical forests and the potential for organisms themselves to modify their own environment. In the case of plants, leaf temperature is linked to the water and surface energy balance of their microenvironment. Here we present results from near-continuous thermal camera monitoring of the forest canopy in Barro Colorado Island, Panama (5-minute intervals for approximately 9 months). We compare daytime (maximum) vs. nighttime (minimum) differences between canopy temperature and air temperature, relative humidity, solar radiation, and precipitation. On average, canopy temperatures are consistently ~2 degrees Celsius higher than air temperatures. These data can paired with flux tower data on-site and used to advance understanding of temperature controls on the structure and function of tropical forests, such as carbon assimilation, phenology, and habitat monitoring, and can be integrated into models to improve predictions of tropical forest response to future climate change.

Influence and predictive capacity of climate anomalies on daily to decadal extremes in canopy photosynthesis.

PubMed

Desai, Ankur R

2014-02-01

Significant advances have been made over the past decades in capabilities to simulate diurnal and seasonal variation of leaf-level and canopy-scale photosynthesis in temperate and boreal forests. However, long-term prediction of future forest productivity in a changing climate may be more dependent on how climate and biological anomalies influence extremes in interannual to decadal variability of canopy ecosystem carbon exchanges. These exchanges can differ markedly from leaf level responses, especially owing to the prevalence of long lags in nutrient and water cycling. Until recently, multiple long-term (10+ year) high temporal frequency (daily) observations of canopy exchange were not available to reliably assess this claim. An analysis of one of the longest running North American eddy covariance flux towers reveals that single climate variables do not adequately explain carbon exchange anomalies beyond the seasonal timescale. Daily to weekly lagged anomalies of photosynthesis positively autocorrelate with daily photosynthesis. This effect suggests a negative feedback in photosynthetic response to climate extremes, such as anomalies in evapotranspiration and maximum temperature. Moisture stress in the prior season did inhibit photosynthesis, but mechanisms are difficult to assess. A complex interplay of integrated and lagged productivity and moisture-limiting factors indicate a critical role of seasonal thresholds that limit growing season length and peak productivity. These results lead toward a new conceptual framework for improving earth system models with long-term flux tower observations.

Validating spatial structure in canopy water content using geostatistics

NASA Technical Reports Server (NTRS)

Sanderson, E. W.; Zhang, M. H.; Ustin, S. L.; Rejmankova, E.; Haxo, R. S.

1995-01-01

Heterogeneity in ecological phenomena are scale dependent and affect the hierarchical structure of image data. AVIRIS pixels average reflectance produced by complex absorption and scattering interactions between biogeochemical composition, canopy architecture, view and illumination angles, species distributions, and plant cover as well as other factors. These scales affect validation of pixel reflectance, typically performed by relating pixel spectra to ground measurements acquired at scales of 1m(exp 2) or less (e.g., field spectra, foilage and soil samples, etc.). As image analysis becomes more sophisticated, such as those for detection of canopy chemistry, better validation becomes a critical problem. This paper presents a methodology for bridging between point measurements and pixels using geostatistics. Geostatistics have been extensively used in geological or hydrogeolocial studies but have received little application in ecological studies. The key criteria for kriging estimation is that the phenomena varies in space and that an underlying controlling process produces spatial correlation between the measured data points. Ecological variation meets this requirement because communities vary along environmental gradients like soil moisture, nutrient availability, or topography.

Moss Mediates the Influence of Shrub Species on Soil Properties and Processes in Alpine Tundra.

PubMed

Bueno, C Guillermo; Williamson, Scott N; Barrio, Isabel C; Helgadóttir, Ágústa; HiK, David S

2016-01-01

In tundra ecosystems, bryophytes influence soil processes directly and indirectly through interactions with overstory shrub species. We experimentally manipulated moss cover and measured seasonal soil properties and processes under two species of deciduous shrubs with contrasting canopy structures, Salix planifolia pulchra and Betula glandulosa-nana complex. Soil properties (seasonal temperature, moisture and C:N ratios) and processes (seasonal litter decomposition and soil respiration) were measured over twelve months. Shrub species identity had the largest influence on summer soil temperatures and soil respiration rates, which were higher under Salix canopies. Mosses were associated with lower soil moisture irrespective of shrub identity, but modulated the effects of shrubs on winter soil temperatures and soil C:N ratios so that moss cover reduced differences in soil winter temperatures between shrub species and reduced C:N ratios under Betula but not under Salix canopies. Our results suggest a central role of mosses in mediating soil properties and processes, with their influence depending on shrub species identity. Such species-dependent effects need to be accounted for when forecasting vegetation dynamics under ongoing environmental changes.

Moss Mediates the Influence of Shrub Species on Soil Properties and Processes in Alpine Tundra

PubMed Central

Williamson, Scott N.; Barrio, Isabel C.; Helgadóttir, Ágústa; HiK, David S.

2016-01-01

In tundra ecosystems, bryophytes influence soil processes directly and indirectly through interactions with overstory shrub species. We experimentally manipulated moss cover and measured seasonal soil properties and processes under two species of deciduous shrubs with contrasting canopy structures, Salix planifolia pulchra and Betula glandulosa-nana complex. Soil properties (seasonal temperature, moisture and C:N ratios) and processes (seasonal litter decomposition and soil respiration) were measured over twelve months. Shrub species identity had the largest influence on summer soil temperatures and soil respiration rates, which were higher under Salix canopies. Mosses were associated with lower soil moisture irrespective of shrub identity, but modulated the effects of shrubs on winter soil temperatures and soil C:N ratios so that moss cover reduced differences in soil winter temperatures between shrub species and reduced C:N ratios under Betula but not under Salix canopies. Our results suggest a central role of mosses in mediating soil properties and processes, with their influence depending on shrub species identity. Such species-dependent effects need to be accounted for when forecasting vegetation dynamics under ongoing environmental changes. PMID:27760156

Bidirectional reflectance modeling of non-homogeneous plant canopies

NASA Technical Reports Server (NTRS)

Norman, John M.

1986-01-01

The objective of this research is to develop a 3-dimensional radiative transfer model for predicting the bidirectional reflectance distribution function (BRDF) for heterogeneous vegetation canopies. Leaf bidirectional reflectance and transmittance distribution functions were measured for corn and soybean leaves. The measurements clearly show that leaves are complex scatterers and considerable specular reflectance is possible. Because of the character of leaf reflectance, true leaf reflectance is larger than the nadir reflectances that are normally used to represent leaves. A 3-dimensional reflectance model, named BIGAR (Bidirectional General Array Model), was developed and compared with measurements from corn and soybean. The model is based on the concept that heterogeneous canopies can be described by a combination of many subcanopies, which contain all the foliage, and these subcanopy envelopes can be characterized by ellipsoids of various sizes and shapes. The model/measurement comparison results indicate that this relatively simple model captures the essential character of row crop BRDF's. Finally, two soil BDRF models were developed: one represents soil particles as rectangular blocks and the other represents soil particles as spheres. The sphere model was found to be superior.

The impact of changing the land surface scheme in ACCESS(v1.0/1.1) on the surface climatology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kowalczyk, Eva A.; Stevens, Lauren E.; Law, Rachel M.

The Community Atmosphere Biosphere Land Exchange (CABLE) model has been coupled to the UK Met Office Unified Model (UM) within the existing framework of the Australian Community Climate and Earth System Simulator (ACCESS), replacing the Met Office Surface Exchange Scheme (MOSES). Here we investigate how features of the CABLE model impact on present-day surface climate using ACCESS atmosphere-only simulations. The main differences attributed to CABLE include a warmer winter and a cooler summer in the Northern Hemisphere (NH), earlier NH spring runoff from snowmelt, and smaller seasonal and diurnal temperature ranges. The cooler NH summer temperatures in canopy-covered regions aremore » more consistent with observations and are attributed to two factors. Firstly, CABLE accounts for aerodynamic and radiative interactions between the canopy and the ground below; this placement of the canopy above the ground eliminates the need for a separate bare ground tile in canopy-covered areas. Secondly, CABLE simulates larger evapotranspiration fluxes and a slightly larger daytime cloud cover fraction. Warmer NH winter temperatures result from the parameterization of cold climate processes in CABLE in snow-covered areas. In particular, prognostic snow density increases through the winter and lowers the diurnally resolved snow albedo; variable snow thermal conductivity prevents early winter heat loss but allows more heat to enter the ground as the snow season progresses; liquid precipitation freezing within the snowpack delays the building of the snowpack in autumn and accelerates snow melting in spring. Altogether we find that the ACCESS simulation of surface air temperature benefits from the specific representation of the turbulent transport within and just above the canopy in the roughness sublayer as well as the more complex snow scheme in CABLE relative to MOSES.« less

Maximum Entropy Production Modeling of Evapotranspiration Partitioning on Heterogeneous Terrain and Canopy Cover: advantages and limitations.

NASA Astrophysics Data System (ADS)

Gutierrez-Jurado, H. A.; Guan, H.; Wang, J.; Wang, H.; Bras, R. L.; Simmons, C. T.

2015-12-01

Quantification of evapotranspiration (ET) and its partition over regions of heterogeneous topography and canopy poses a challenge using traditional approaches. In this study, we report the results of a novel field experiment design guided by the Maximum Entropy Production model of ET (MEP-ET), formulated for estimating evaporation and transpiration from homogeneous soil and canopy. A catchment with complex terrain and patchy vegetation in South Australia was instrumented to measure temperature, humidity and net radiation at soil and canopy surfaces. Performance of the MEP-ET model to quantify transpiration and soil evaporation was evaluated during wet and dry conditions with independently and directly measured transpiration from sapflow and soil evaporation using the Bowen Ratio Energy Balance (BREB). MEP-ET transpiration shows remarkable agreement with that obtained through sapflow measurements during wet conditions, but consistently overestimates the flux during dry periods. However, an additional term introduced to the original MEP-ET model accounting for higher stomatal regulation during dry spells, based on differences between leaf and air vapor pressure deficits and temperatures, significantly improves the model performance. On the other hand, MEP-ET soil evaporation is in good agreement with that from BREB regardless of moisture conditions. The experimental design allows a plot and tree scale quantification of evaporation and transpiration respectively. This study confirms for the first time that the MEP-ET originally developed for homogeneous open bare soil and closed canopy can be used for modeling ET over heterogeneous land surfaces. Furthermore, we show that with the addition of an empirical function simulating the plants ability to regulate transpiration, and based on the same measurements of temperature and humidity, the method can produce reliable estimates of ET during both wet and dry conditions without compromising its parsimony.

[The research on bidirectional reflectance computer simulation of forest canopy at pixel scale].

PubMed

Song, Jin-Ling; Wang, Jin-Di; Shuai, Yan-Min; Xiao, Zhi-Qiang

2009-08-01

Computer simulation is based on computer graphics to generate the realistic 3D structure scene of vegetation, and to simulate the canopy regime using radiosity method. In the present paper, the authors expand the computer simulation model to simulate forest canopy bidirectional reflectance at pixel scale. But usually, the trees are complex structures, which are tall and have many branches. So there is almost a need for hundreds of thousands or even millions of facets to built up the realistic structure scene for the forest It is difficult for the radiosity method to compute so many facets. In order to make the radiosity method to simulate the forest scene at pixel scale, in the authors' research, the authors proposed one idea to simplify the structure of forest crowns, and abstract the crowns to ellipsoids. And based on the optical characteristics of the tree component and the characteristics of the internal energy transmission of photon in real crown, the authors valued the optical characteristics of ellipsoid surface facets. In the computer simulation of the forest, with the idea of geometrical optics model, the gap model is considered to get the forest canopy bidirectional reflectance at pixel scale. Comparing the computer simulation results with the GOMS model, and Multi-angle Imaging SpectroRadiometer (MISR) multi-angle remote sensing data, the simulation results are in agreement with the GOMS simulation result and MISR BRF. But there are also some problems to be solved. So the authors can conclude that the study has important value for the application of multi-angle remote sensing and the inversion of vegetation canopy structure parameters.

The impact of changing the land surface scheme in ACCESS(v1.0/1.1) on the surface climatology

DOE PAGES

Kowalczyk, Eva A.; Stevens, Lauren E.; Law, Rachel M.; ...

2016-08-23

The Community Atmosphere Biosphere Land Exchange (CABLE) model has been coupled to the UK Met Office Unified Model (UM) within the existing framework of the Australian Community Climate and Earth System Simulator (ACCESS), replacing the Met Office Surface Exchange Scheme (MOSES). Here we investigate how features of the CABLE model impact on present-day surface climate using ACCESS atmosphere-only simulations. The main differences attributed to CABLE include a warmer winter and a cooler summer in the Northern Hemisphere (NH), earlier NH spring runoff from snowmelt, and smaller seasonal and diurnal temperature ranges. The cooler NH summer temperatures in canopy-covered regions aremore » more consistent with observations and are attributed to two factors. Firstly, CABLE accounts for aerodynamic and radiative interactions between the canopy and the ground below; this placement of the canopy above the ground eliminates the need for a separate bare ground tile in canopy-covered areas. Secondly, CABLE simulates larger evapotranspiration fluxes and a slightly larger daytime cloud cover fraction. Warmer NH winter temperatures result from the parameterization of cold climate processes in CABLE in snow-covered areas. In particular, prognostic snow density increases through the winter and lowers the diurnally resolved snow albedo; variable snow thermal conductivity prevents early winter heat loss but allows more heat to enter the ground as the snow season progresses; liquid precipitation freezing within the snowpack delays the building of the snowpack in autumn and accelerates snow melting in spring. Altogether we find that the ACCESS simulation of surface air temperature benefits from the specific representation of the turbulent transport within and just above the canopy in the roughness sublayer as well as the more complex snow scheme in CABLE relative to MOSES.« less

Variation in the Volatile Profiles of Black and Manchurian Ash in Relation to Emerald Ash Borer Oviposition Preferences.

PubMed

Rigsby, Chad M; McCartney, Nathaniel B; Herms, Daniel A; Tumlinson, James H; Cipollini, Don

2017-08-01

Emerald ash borer (EAB; Agrilus planipennis) is a devastating pest of ash (Fraxinus spp.) in its invaded range in North America. Its coevolved Asian hosts are more resistant and less preferred for oviposition than susceptible North American species. We compared EAB oviposition preferences and bark and canopy volatile organic compound (VOC) emissions of resistant Manchurian ash and susceptible black ash, and examined relationships between VOC profiles and oviposition. In the field, black ash was highly preferred for oviposition while no eggs were laid on Manchurian ash, and we found clear differences in the VOC profiles of Manchurian and black ash. We detected 78 compounds emitted from these species, including 16 compounds that elicited EAB antennal activity in prior studies. Four compounds were unique to black and 11 to Manchurian ash. Emission rates of 14 canopy and 19 bark volatiles varied among the two species, including four previously reported as antennally active. Specifically, 7-epi-sesquithujene (bark) emissions were greater from black ash, while β-caryophyllene (canopy), linalool (bark), and α-cubebene (bark) were emitted at higher rates by Manchurian ash. No relationships were found between the emission rate of any single compound or group of compounds (e.g. monoterpenes) suggesting that preference may be based on complex profile combinations. This is the first study to directly compare VOCs of black and Manchurian ash as well as the first to examine bark- and canopy-specific VOCs. The unique bark and canopy VOC profiles of these two species implicates potentially important variation in VOCs between a closely related resistant and susceptible species that provides a foundation for future studies of host preferences of EAB.

The Influence of Anthropogenic Sources on Fluxes of Secondary Organic Aerosol Precursors From a Deciduous Forest in the Southeastern United States

NASA Astrophysics Data System (ADS)

Saylor, R. D.; Stein, A. F.

2012-12-01

The dynamic, bi-directional exchange of trace chemical species between forests and the atmosphere has important impacts on both the forest ecosystem and atmospheric composition, with potentially profound consequences on air quality, climate and global ecosystem functioning. Forests are a dominant source of biogenic volatile organic compound (BVOC) emissions into the earth's atmosphere and thus play an important role in the formation of secondary organic aerosol (SOA). To arrive at a better scientific understanding of the complex chemical and physical processes of forest-atmosphere exchange and provide a platform for robust analysis of field measurements of these processes, a process-level, multiphase model of the atmospheric chemistry and physics of forest canopies is being developed. This model, the Atmospheric Chemistry and Canopy Exchange Simulation System (ACCESS) is being used to investigate various aspects of forest-atmosphere exchange and chemistry including gas, aqueous and aerosol phases. ACCESS currently includes processes accounting for the emission of BVOCs from the canopy, turbulent vertical transport within and above the canopy and throughout the height of the planetary boundary layer, detailed chemical reactions, mixing with the background atmosphere and bi-directional exchange between the atmosphere and the canopy and the forest floor. The Walker Branch Watershed (WBW) is a dedicated ecosystem research area on the U. S. Department of Energy's Oak Ridge Reservation in eastern Tennessee. The 97.5 ha watershed has been the site of long-term ecosystem and atmospheric research activities since the mid-1960's. A flux tower located within the watershed (35°57'30"N, 84°17'15"W; 365 m above mean sea level) and 10 km southwest of Oak Ridge, Tennessee, has served as a focal point for previous atmospheric turbulence and chemical flux measurements and the canopy morphology of the forest surrounding the flux tower has been extensively documented. The forest is broadleaf deciduous consisting of chestnut oak (Quercus prinus), tulip poplar (Liriodendron tulipifera), white oak (Quercus alba), red oak (Quercus rubra), red maple (Acer rubrum), and various hickory species (Carya sp.) in order of decreasing biomass density. At the time of isoprene flux measurements made at the tower in 1999, the stand was approximately 50 years old, the overstory canopy height was 24 m, and the whole canopy leaf area index was 4.9 m2 leaf/m2 ground area. In this presentation, the model formulation is described and results from the application of ACCESS to the WBW forest are presented and compared to measurements made at the site to investigate the influence of background anthropogenic sources on above canopy fluxes of SOA precursors in an isoprene emission dominated landscape in the unique atmospheric chemical environment of the southeastern United States. In particular, levels of background NOx concentrations are found to significantly influence both the magnitude and chemical composition of fluxes of SOA precursors from the canopy.

HYDRAULIC REDISTRIBUTION OF SOIL WATER BY ROOTS IN FORESTS OF THE PACIFIC NORTHWEST

EPA Science Inventory

One aspect of structural complexity of forest canopies is the root system structure belowground, which influences patterns of soil water utilization by trees. Deeply rooted trees and other plants can hydraulically lift water via their roots from several m below the soil surface ...

Partitioning of water flux in a Sierra Nevada ponderosa pine plantation

USGS Publications Warehouse

Kurpius, M.R.; Panek, J.A.; Nikolov, N.T.; McKay, M.; Goldstein, Allen H.

2003-01-01

The weather patterns of the west side of the Sierra Nevada Mountains (cold, wet winters and hot, dry summers) strongly influence how water is partitioned between transpiration and evaporation and result in a specific strategy of water use by ponderosa pine trees (Pinus ponderosa) in this region. To investigate how year-round water fluxes were partitioned in a young ponderosa pine ecosystem in the Sierra Nevada Mountains, water fluxes were continually measured from June 2000 to May 2001 using a combination of sap flow and eddy covariance techniques (above- and below-canopy). Water fluxes were modeled at our study site using a biophysical model, FORFLUX. During summer and fall water fluxes were equally partitioned between transpiration and soil evaporation while transpiration dominated the water fluxes in winter and spring. The trees had high rates of canopy conductance and transpiration in the early morning and mid-late afternoon and a mid-day depression during the dry season. We used a diurnal centroid analysis to show that the timing of high canopy conductance and transpiration relative to high vapor pressure deficit (D) shifted with soil moisture: during periods of low soil moisture canopy conductance and transpiration peaked early in the day when D was low. Conversely, during periods of high soil moisture canopy conductance and transpiration peaked at the same time or later in the day than D. Our observations suggest a general strategy by the pine trees in which they maximize stomatal conductance, and therefore carbon fixation, throughout the day on warm sunny days with high soil moisture (i.e. warm periods in winter and late spring) and maximize stomatal conductance and carbon fixation in the morning through the dry periods. FORFLUX model estimates of evaporation and transpiration were close to measured/calculated values during the dry period, including the drought, but underestimated transpiration and overestimated evaporation during the wet period. ?? 2003 Elsevier Science B.V. All rights reserved.

The influence of tree traits and storm event characteristics on stemflow production from isolated deciduous trees in an urban park

NASA Astrophysics Data System (ADS)

Carlyle-Moses, D. E.; Schooling, J. T.

2014-12-01

Urban tree canopy processes affect the volume and biogeochemistry of inputs to the hydrological cycle in cities. We studied stemflow from 37 isolated deciduous trees in an urban park in Kamloops, British Columbia which has a semi-arid climate dominated by small precipitation events. Precipitation and stemflow were measured on an event basis from June 12, 2012 to November 3, 2013. To clarify the effect of canopy traits on stemflow thresholds, rates, yields, percent, and funneling ratios, we analyzed branch angles, bark roughness, tree size, cover, leaf size, and branch and leader counts. High branch angles promoted stemflow in all trees, while bark roughness influenced stemflow differently for single- and multi-leader trees. The association between stemflow and numerous leaders deserves further study. Columnar-form trees often partitioned a large percentage of precipitation into stemflow, with event-scale values as high as 27.9 % recorded for an Armstrong Freeman Maple (Acer x freemanii 'Armstrong'). Under growing-season conditions funneling ratios as high as 196.9 were derived for an American Beech (Fagus grandifolia) individual. Among meteorological variables, rain depth was strongly correlated with stemflow yields; intra-storm break duration, rainfall intensity, rainfall inclination, wind speed, and vapour pressure deficit also played roles. Greater stemflow was associated with leafless canopies and with rain or mixed events versus snow. Results can inform climate-sensitive selection and siting of urban trees towards integrated rainwater management. For example, previous studies suggest that the reduction in storm-water generation by urban trees is accomplished through canopy interception loss alone. However, trees that partition large quantities of precipitation canopy-drainage as stemflow to the base of their trunks, where it has the potential to infiltrate into the soil media rather than fall on impervious surfaces as throughfall, may assist in reducing stormwater flow.

Rethinking the process of detrainment: jets in obstructed natural flows

NASA Astrophysics Data System (ADS)

Mossa, Michele; de Serio, Francesca

2016-12-01

A thorough understanding of the mixing and diffusion of turbulent jets released in porous obstructions is still lacking in literature. This issue is undoubtedly of interest because it is not strictly limited to vegetated flows, but also includes outflows which come from different sources and which spread among oyster or wind farms, as well as aerial pesticide treatments sprayed onto orchards. The aim of the present research is to analyze this process from a theoretical point of view. Specifically, by examining the entrainment coefficient, it is deduced that the presence of a canopy prevents a momentum jet from having an entrainment process, but rather promotes its detrainment. In nature, detrainment is usually associated with buoyancy-driven flows, such as plumes or density currents flowing in a stratified environment. The present study proves that detrainment occurs also when a momentum-driven jet is issued in a not-stratified obstructed current, such as a vegetated flow.

Characterization and Low-Dimensional Modeling of Urban Fluid Flow

DTIC Science & Technology

2014-10-06

4 2 Wind Tunnel , Apparatus and Data Processing 7 2.1 Modelling of the Atmospheric Boundary Layer...was demonstrated. Most notably, wind tunnel experiments were performed at a number of different angles of incidence, providing for the first time a...Coceal and Belcher [2004] developed an urban canopy model for mean winds in urban areas that compares well with data from wind tunnel experiments

Influence of riparian alteration on canopy coverage and macrophyte abundance in Southeastern USA blackwater streams

Treesearch

Dean E. Fletcher; S. David Wilkins; J.V. McArthur; Gary K. Meffe

2000-01-01

Two tributary streams (Fourmile branch and Pen branch) located on the US Department of Energy's Savannah river site in west-central South Carolina, USA received thermal discharges from nuclear production reactors for over 30 years. Effluent releases produced stream water temperatures of over 50°C and stream flows of ten times above their base level. Consequently,...

An inter-model comparison of urban canopy effects on climate

NASA Astrophysics Data System (ADS)

Halenka, Tomas; Karlicky, Jan; Huszar, Peter; Belda, Michal; Bardachova, Tatsiana

2017-04-01

The role of cities is increasing and will continue to increase in future, as the population within the urban areas is growing faster, with the estimate for Europe of about 84% living in urban areas in about mid of 21st century. To assess the impact of cities and, in general, urban surfaces on climate, using of modeling approach is well appropriate. Moreover, with higher resolution, urban areas becomes to be better resolved in the regional models and their relatively significant impacts should not be neglected. Model descriptions of urban canopy related meteorological effects can, however, differ largely given the odds in the driving models, the underlying surface models and the urban canopy parameterizations, representing a certain uncertainty. In this study we try to contribute to the estimation of this uncertainty by performing numerous experiments to assess the urban canopy meteorological forcing over central Europe on climate for the decade 2001-2010, using two driving models (RegCM4 and WRF) in 10 km resolution driven by ERA-Interim reanalyses, three surface schemes (BATS and CLM4.5 for RegCM4 and Noah for WRF) and five urban canopy parameterizations available: one bulk urban scheme, three single layer and a multilayer urban scheme. Actually, in RegCM4 we used our implementation of the Single Layer Urban Canopy Model (SLUCM) in BATS scheme and CLM4.5 option with urban parameterization based on SLUCM concept as well, in WRF we used all the three options, i.e. bulk, SLUCM and more complex and sophisticated Building Environment Parameterization (BEP) connected with Building Energy Model (BEM). As a reference simulations, runs with no urban areas and with no urban parameterizations were performed. Effects of cities on urban and rural areas were evaluated. Effect of reducing diurnal temperature range in cities (around 2 °C in summer) is noticeable in all simulation, independent to urban parameterization type and model. Also well-known warmer summer city nights appear in all simulations. Further, winter boundary layer increase by 100-200 m, together with wind reduction, is visible in all simulations. The spatial distribution of the night-time temperature response of models to urban canopy forcing is rather similar in each set-up, showing temperature increases up to 3°C in summer. In general, much lower increase are modeled for day-time conditions, which can be even slightly negative due to dominance of shadowing in urban canyons, especially in the morning hours. The winter temperature response, driven mainly by anthropogenic heat (AH) is strong in urban schemes where the building-street energy exchange is more resolved and is smaller, where AH is simply prescribed as additive flux to the sensible heat. Somewhat larger differences between the models are encountered for the response of wind and the height of planetary boundary layer (ZPBL), with dominant increases from a few 10 m up to 250 m depending on the model. The comparison of observation of diurnal temperature amplitude from ECAD data with model results and hourly data from Prague with model hourly values show improvement when urban effects are considered. Larger spread encountered for wind and turbulence (as ZPBL) should be considered when choices of urban canopy schemes are made, especially in connection with modeling transport of pollutants within/from cities. Another conclusion is that choosing more complex urban schemes does not necessary improves model performance and using simpler and computationally less demanding (e.g. single layer) urban schemes, is often sufficient.

Effects of branch height on leaf gas exchange, branch hydraulic conductance and branch sap flux in open-grown ponderosa pine.

PubMed

Hubbard, Robert M; Bond, Barbara J; Senock, Randy S; Ryan, Michael G

2002-06-01

Recent studies have shown that stomata respond to changes in hydraulic conductance of the flow path from soil to leaf. In open-grown tall trees, branches of different heights may have different hydraulic conductances because of differences in path length and growth. We determined if leaf gas exchange, branch sap flux, leaf specific hydraulic conductance, foliar carbon isotope composition (delta13C) and ratios of leaf area to sapwood area within branches were dependent on branch height (10 and 25 m) within the crowns of four open-grown ponderosa pine (Pinus ponderosa Laws.) trees. We found no difference in leaf gas exchange or leaf specific hydraulic conductance from soil to leaf between the upper and lower canopy of our study trees. Branch sap flux per unit leaf area and per unit sapwood area did not differ between the 10- and 25-m canopy positions; however, branch sap flux per unit sapwood area at the 25-m position had consistently lower values. Branches at the 25-m canopy position had lower leaf to sapwood area ratios (0.17 m2 cm-2) compared with branches at the 10-m position (0.27 m2 cm-2) (P = 0.03). Leaf specific conductance of branches in the upper crown did not differ from that in the lower crown. Other studies at our site indicate lower hydraulic conductance, sap flux, whole-tree canopy conductance and photosynthesis in old trees compared with young trees. This study suggests that height alone may not explain these differences.

Bio-Inspired Control of Roughness and Trailing Edge Noise

NASA Astrophysics Data System (ADS)

Clark, Ian Andrew

Noise from fluid flow over rough surfaces is an important consideration in the design and performance of certain vehicles with high surface-area-to-perimeter ratios. A new method of noise control based on the anatomy of owls is developed and consists of fabric or fibrous canopies suspended above the surface. The method is tested experimentally and is found to reduce the total far-field noise emitted by the surface. The treatment also is found to reduce the magnitude of pressure fluctuations felt by the underlying surface by up to three orders of magnitude. Experimental investigations into the effects of geometric parameters of the canopies lead to an optimized design which maximizes noise reduction. The results obtained during the canopy experiment inspired a separate new device for the reduction of trailing edge noise. This type of noise is generated by flow past the wing of an aircraft or the blades of a wind turbine, and is a source of annoyance for those in surrounding communities. The newly developed treatment consists of small fins, or "finlets," placed near the trailing edge of an airfoil. The treatment is tested experimentally at near-full-scale conditions and is found to reduce the magnitude of far-field noise by up to 10 dB. Geometric parameters of the finlets are tested to determine the optimal size and spacing of the finlets to maximize noise reduction. Follow-up computational and experimental studies reveal the fluid mechanics behind the noise reduction by showing that the finlets produce a velocity deficit in the flow near the trailing edge and limit the magnitude and spanwise correlation lengthscale of turbulence near the trailing edge, factors which determine the magnitude of far-field noise. In a final experiment, the finlets are applied to a marine propeller and are found to reduce not only trailing edge noise, but also noise caused by the bluntness of the trailing edge. The results of this experiment show the potential usefulness of finlets to reduce noise from rotating systems, such as fans or propellers, as well as from structures which feature blunt trailing edges.

Multiscale methods for gore curvature calculations from FSI modeling of spacecraft parachutes

NASA Astrophysics Data System (ADS)

Takizawa, Kenji; Tezduyar, Tayfun E.; Kolesar, Ryan; Boswell, Cody; Kanai, Taro; Montel, Kenneth

2014-12-01

There are now some sophisticated and powerful methods for computer modeling of parachutes. These methods are capable of addressing some of the most formidable computational challenges encountered in parachute modeling, including fluid-structure interaction (FSI) between the parachute and air flow, design complexities such as those seen in spacecraft parachutes, and operational complexities such as use in clusters and disreefing. One should be able to extract from a reliable full-scale parachute modeling any data or analysis needed. In some cases, however, the parachute engineers may want to perform quickly an extended or repetitive analysis with methods based on simplified models. Some of the data needed by a simplified model can very effectively be extracted from a full-scale computer modeling that serves as a pilot. A good example of such data is the circumferential curvature of a parachute gore, where a gore is the slice of the parachute canopy between two radial reinforcement cables running from the parachute vent to the skirt. We present the multiscale methods we devised for gore curvature calculation from FSI modeling of spacecraft parachutes. The methods include those based on the multiscale sequentially-coupled FSI technique and using NURBS meshes. We show how the methods work for the fully-open and two reefed stages of the Orion spacecraft main and drogue parachutes.

Measurements of the Temporal and Spatial Distributions of Turbulence within the Fringing Region of a Mangrove Forest

NASA Astrophysics Data System (ADS)

Norris, B. K.; Mullarney, J. C.; Bryan, K. R.; Henderson, S. M.

2016-02-01

Fringing coastal mangrove forests provide a barrier between high energy coastlines and lower energy intertidal zones. The aerial roots of mangrove trees dissipate tidal currents and waves, greatly modifying forest-wide sedimentation. However, understanding of turbulence generation and dissipation within the root canopy has been inhibited by the difficulty of resolving such small scale flows. Our research provides a unique, high-resolution (50Hz, mm scale) set of field observations from the seaward edge of Cu Lao Dung Island in the Song Hau distributary channel of the Mekong Delta, Vietnam. Here, we deployed an array of current meters to resolve flows over a length scales of 1 to 100m in order to capture the transition between wave-dominated tidal mudflats, through the forest fringe and into the sheltered forest interior. We are able to demonstrate that there is significant enhancement of the dissipation rate of turbulent kinetic energy at the interface of the forest fringe (1-2 orders of magnitude) compared to the mudflat and forest environments. Moreover, a fine scale study on the evolution of turbulence within the forest fringe reveals a relationship between the location of maximum turbulence and the diameter of individual vegetation elements. Our results confirm that the presence of mangrove vegetation is a significant contributor to the heterogeneous distribution of turbulence. These results show that mangroves have a complex effect on the spatial distribution of turbulence: flows and turbulence are reduced in the sheltered forest interior, creating an ideal environment for sediment deposition, whereas turbulence and erosion is enhanced seaward towards the forest fringe. Given the decline of mangroves worldwide and their role in marine carbon sequestration, a more complete understanding of the complex hydrodynamics that shape the physical environment of mangrove forests is critical to determining the factors that underpin forest expansion or retreat.

Predicting the effect of deep-rooted hybrid poplars on the groundwater flow system at a large-scale phytoremediation site.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Quinn, J. J.; Negri, M. C.; Hinchman, R. R.

2001-03-01

Estimating the effect of phreatophytes on the groundwater flow field is critical in the design or evaluation of a phytoremediation system. Complex hydrogeological conditions and the transient water use rates of trees require the application of numerical modeling to address such issues as hydraulic containment, seasonality, and system design. In 1999, 809 hybrid poplars and willows were planted to phytoremediate the 317 and 319 Areas of Argonne National Laboratory near Chicago, Illinois. Contaminants of concern are volatile organic compounds and tritium. The site hydrogeology is a complex framework of glacial tills interlaced with sands, gravels, and silts of varying character,more » thickness, and lateral extent. A total of 420 poplars were installed using a technology to direct the roots through a 25-ft (8-m)-thick till to a contaminated aquifer. Numerical modeling was used to simulate the effect of the deep-rooted poplars on this aquifer of concern. Initially, the best estimates of input parameters and boundary conditions were determined to provide a suitable match to historical transient ground-water flow conditions. The model was applied to calculate the future effect of the developing deep-rooted poplars over a 6 year period. The first 3 years represent the development period of the trees. In the fourth year, canopy closure is expected to occur; modeling continues through the first 3 years of the mature plantation. Monthly estimates of water use by the trees are incorporated. The modeling suggested that the mature trees in the plantation design will provide a large degree of containment of groundwater from the upgradient source areas, despite the seasonal nature of the trees' water consumption. The results indicate the likely areas where seasonal dewatering of the aquifer may limit the availability of water for the trees. The modeling also provided estimates of the residence time of groundwater in the geochemically altered rhizosphere of the plantation.« less

Stereo photo guide for estimating canopy fuel characteristics in conifer stands

Treesearch

Joe H. Scott; Elizabeth D. Reinhardt

2005-01-01

Stereo photographs, hemispherical photographs, and stand data are presented with associated biomass and canopy fuel characteristics for five Interior West conifer stands. Canopy bulk density, canopy base height, canopy biomass by component, available canopy fuel load, and vertical distribution of canopy fuel are presented for each plot at several stages of sampling,...

Identifying the environmental factors that effect within canopy BVOC loss using a multilevel canopy model

NASA Astrophysics Data System (ADS)

Chan, W. S.; Fuentes, J. D.; Lerdau, M.

2010-12-01

This presentation will provide research findings to evaluate the hypothesis that the loss of biogenic volatile organic compound (BVOC) within plant canopies is dynamic and depends on factors such as plant canopy architecture (height and leaf area distribution), atmospheric turbulence, concentration of oxidants (OH, O3, NO3), and the reactivity of BVOC species. Results will be presented from a new one dimensional, multilevel canopy model that couples algorithms for canopy microclimate, leaf physiology, BVOC emission, turbulent transport, and atmospheric chemistry to investigate the relative importance of factors that impact BVOC loss within a forest canopy. Model sensitivity tests will be presented and discussed to identify factors driving canopy loss. Results show isoprene and monoterpene canopy losses as high as 9 and 18%, respectively, for tall canopies during the daytime. We hypothesize that canopy height and wind speed (i.e. canopy residence time) may be the most important in dictating within-canopy loss. This work will reduce the error in bottom-up flux estimates of BVOCs and ultimately improve parameterizations of BVOC sources in air quality models by accounting for within canopy processes.

Using virtual 3-D plant architecture to assess fungal pathogen splash dispersal in heterogeneous canopies: a case study with cultivar mixtures and a non-specialized disease causal agent

PubMed Central

Gigot, C.; de Vallavieille-Pope, C.; Huber, L.; Saint-Jean, S.

2014-01-01

Background and Aims Recent developments in plant disease management have led to a growing interest in alternative strategies, such as increasing host diversity and decreasing the use of pesticides. Use of cultivar mixtures is one option, allowing the spread of plant epidemics to be slowed down. As dispersal of fungal foliar pathogens over short distances by rain-splash droplets is a major contibutor to the spread of disease, this study focused on modelling the physical mechanisms involved in dispersal of a non-specialized pathogen within heterogeneous canopies of cultivar mixtures, with the aim of optimizing host diversification at the intra-field level. Methods Virtual 3-D wheat-like plants (Triticum aestivum) were used to consider interactions between plant architecture and disease progression in heterogeneous canopies. A combined mechanistic and stochastic model, taking into account splash droplet dispersal and host quantitative resistance within a 3-D heterogeneous canopy, was developed. It consists of four sub-models that describe the spatial patterns of two cultivars within a complex canopy, the pathway of rain-splash droplets within this canopy, the proportion of leaf surface area impacted by dispersal via the droplets and the progression of disease severity after each dispersal event. Key Results Different spatial organization, proportions and resistance levels of the cultivars of two-component mixtures were investigated. For the eight spatial patterns tested, the protective effect against disease was found to vary by almost 2-fold, with the greatest effect being obtained with the smallest genotype unit area, i.e. the ground area occupied by an independent unit of the host population that is genetically homogeneous. Increasing both the difference between resistance levels and the proportion of the most resistant cultivar often resulted in a greater protective effect; however, this was not observed for situations in which the most resistant of the two cultivars in the mixture had a relatively low level of resistance. Conclusions The results show agreement with previous data obtained using experimental approaches. They demonstrate that in order to maximize the potential mixture efficiency against a splash-dispersed pathogen, optimal susceptible/resistant cultivar proportions (ranging from 1/9 to 5/5) have to be established based on host resistance levels. The results also show that taking into account dispersal processes in explicit 3-D plant canopies can be a key tool for investigating disease progression in heterogeneous canopies such as cultivar mixtures. PMID:24989786

Contraction and Expansion of the Upper Zambezi Wetlands in Response to Precipitation Regime Changes and Impacts on Carbon, Energy and Water Fluxes

NASA Astrophysics Data System (ADS)

Lowman, L.; Barros, A. P.

2017-12-01

The Upper Zambezi River Basin (UZRB) serves as the headwater catchment of the fourth-largest river in Africa, provides essential freshwater resources to arid and semi-arid regions within its boundaries, and recharges the Northern Kalahari Aquifer. Shallow and clayey soils give way to seasonal waterlogging, especially along drainage lines, favoring the establishment of wetlands. Woodland savanna, grasslands and miombo dominate the UZRB's diverse ecosystem, marking a complex transition zone between the Congo tropical rainforest and the Kalahari Desert that reflects spatial rainfall gradients. Satellite imagery shows that permanent wetlands are located in low-lying convergence zones in the northeast and northwest corners of UZRB where surface-groundwater interactions are most vigorous. However, orographic precipitation gradients cannot fully explain interannual changes in wetland area and vegetation density. We hypothesize that changes in vegetation density result from nonlinear interactions and feedbacks among precipitation, canopy biophysical properties, soil moisture and groundwater processes modulated by topography and regional hydrogeology. This work aims to understand how changes in vegetation density, particularly in and around permanent and intermittent wetlands, impact carbon, energy and water fluxes. Using the MODIS Nadir BRDF-Adjusted Reflectance product, a seasonally-varying wetland class is derived that reflects inter-annual precipitation and groundwater variability. The Duke Coupled Hydrology Model with Prognostic Vegetation is adapted to include C4 photosynthesis for the UZRB grasslands and used to simulate changes in canopy density and impacts on gross primary productivity, evapotranspiration, and soil moisture at high spatial and temporal resolution. Initial results using the column-wise model provide a baseline for understanding surface fluxes before incorporating groundwater and subsurface flows crucial to investigating the implicit nonlinearities of the region.

A comparison of methods for determining field evapotranspiration: photosynthesis system, sap flow, and eddy covariance

NASA Astrophysics Data System (ADS)

Zhang, Z.; Tian, F.; Hu, H.; Yang, P.

2014-03-01

A multi-scale, multi-technique study was conducted to measure evapotranspiration and its components in a cotton field under mulched drip irrigation conditions in northwestern China. Three measurement techniques at different scales were used: a photosynthesis system (leaf scale), sap flow (plant scale), and eddy covariance (field scale). The experiment was conducted from July to September 2012. To upscale the evapotranspiration from the leaf to plant scale, an approach that incorporated the canopy structure and the relationships between sunlit and shaded leaves was proposed. To upscale the evapotranspiration from the plant to field scale, an approach based on the transpiration per unit leaf area was adopted and modified to incorporate the temporal variability in the relationship between leaf areas and stem diameter. At the plant scale, the estimate of the transpiration based on the photosynthesis system with upscaling was slightly higher (18%) than that obtained by sap flow. At the field scale, the estimates of transpiration derived from sap flow with upscaling and eddy covariance showed reasonable consistency during the cotton's open-boll growth stage, during which soil evaporation can be neglected. The results indicate that the proposed upscaling approaches are reasonable and valid. Based on the measurements and upscaling approaches, evapotranspiration components were analyzed for a cotton field under mulched drip irrigation. During the two analyzed sub-periods in July and August, evapotranspiration rates were 3.94 and 4.53 m day-1, respectively. The fraction of transpiration to evapotranspiration reached 87.1% before drip irrigation and 82.3% after irrigation. The high fraction of transpiration over evapotranspiration was principally due to the mulched film above the drip pipe, low soil water content in the inter-film zone, well-closed canopy, and high water requirement of the crop.

A comparison of methods for determining field evapotranspiration: photosynthesis system, sap flow, and eddy covariance

NASA Astrophysics Data System (ADS)

Zhang, Z.; Tian, F.; Hu, H. C.; Hu, H. P.

2013-11-01

A multi-scale, multi-technique study was conducted to measure evapotranspiration and its components in a cotton field under mulched drip irrigation conditions in northwestern China. Three measurement techniques at different scales were used: photosynthesis system (leaf scale), sap flow (plant scale), and eddy covariance (field scale). The experiment was conducted from July to September 2012. To upscale the evapotranspiration from the leaf to the plant scale, an approach that incorporated the canopy structure and the relationships between sunlit and shaded leaves was proposed. To upscale the evapotranspiration from the plant to the field scale, an approach based on the transpiration per unit leaf area was adopted and modified to incorporate the temporal variability in the relationships between leaf area and stem diameter. At the plant scale, the estimate of the transpiration based on the photosynthesis system with upscaling was slightly higher (18%) than that obtained by sap flow. At the field scale, the estimates of transpiration derived from sap flow with upscaling and eddy covariance shown reasonable consistency during the cotton open boll growth stage when soil evaporation can be neglected. The results indicate that the upscaling approaches are reasonable and valid. Based on the measurements and upscaling approaches, evapotranspiration components were analyzed under mulched drip irrigation. During the two analysis sub-periods in July and August, evapotranspiration rates were 3.94 and 4.53 mm day-1, respectively. The fraction of transpiration to evapotranspiration reached 87.1% before drip irrigation and 82.3% after irrigation. The high fraction of transpiration over evapotranspiration was principally due to the mulched film above drip pipe, low soil water content in the inter-film zone, well-closed canopy, and high water requirement of the crop.

Persistence of long-distance, insect-mediated pollen movement for a tropical canopy tree species in remnant forest patches in an urban landscape.

PubMed

Noreen, A M E; Niissalo, M A; Lum, S K Y; Webb, E L

2016-12-01

As deforestation and urbanization continue at rapid rates in tropical regions, urban forest patches are essential repositories of biodiversity. However, almost nothing is known about gene flow of forest-dependent tree species in urban landscapes. In this study, we investigated gene flow in the insect-pollinated, wind-dispersed tropical tree Koompassia malaccensis in and among three remnant forest patches in the urbanized landscape of Singapore. We genotyped the vast majority of adults (N=179) and a large number of recruits (N=2103) with 8 highly polymorphic microsatellite markers. Spatial genetic structure of the recruit and adult cohorts was significant, showing routine gene dispersal distances of ~100-400 m. Parentage analysis showed that 97% of recruits were within 100 m of their mother tree, and a high frequency of relatively short-distance pollen dispersal (median ~143-187 m). Despite routine seed and pollen dispersal distances of within a few hundred meters, interpatch gene flow occurred between all patches and was dominated by pollen movement: parentage analysis showed 76 pollen versus 2 seed interpatch dispersal events, and the seedling neighborhood model estimated ~1-6% seed immigration and ~21-46% pollen immigration rates, depending on patch. In addition, the smallest patch (containing five adult K. malaccensis trees) was entirely surrounded by >2.5 km of 'impervious' substrate, yet had the highest proportional pollen and seed immigration estimates of any patch. Hence, contrary to our hypothesis, insect-mediated gene flow persisted across an urban landscape, and several of our results also parallel key findings from insect-pollinated canopy trees sampled in mixed agricultural-forest landscapes.

Regulation of water flux through tropical forest canopy trees: do universal rules apply?

PubMed

Meinzer, F C; Goldstein, G; Andrade, J L

2001-01-01

Tropical moist forests are notable for their richness in tree species. The presence of such a diverse tree flora presents potential problems for scaling up estimates of water use from individual trees to entire stands and for drawing generalizations about physiological regulation of water use in tropical trees. We measured sapwood area or sap flow, or both, in 27 co-occurring canopy species in a Panamanian forest to determine the extent to which relationships between tree size, sapwood area and sap flow were species-specific, or whether they were constrained by universal functional relationships between tree size, conducting xylem area, and water use. For the 24 species in which active xylem area was estimated over a range of size classes, diameter at breast height (DBH) accounted for 98% of the variation in sapwood area and 67% of the variation in sapwood depth when data for all species were combined. The DBH alone also accounted for > or = 90% of the variation in both maximum and total daily sap flux density in the outermost 2 cm of sapwood for all species taken together. Maximum sap flux density measured near the base of the tree occurred at about 1,400 h in the largest trees and 1,130 h in the smallest trees studied, and DBH accounted for 93% of the variation in the time of day at which maximum sap flow occurred. The shared relationship between tree size and time of maximum sap flow at the base of the tree suggests that a common relationship between diurnal stem water storage capacity and tree size existed. These results are consistent with a recent hypothesis that allometric scaling of plant vascular systems, and therefore water use, is universal.

Light distribution in plant canopies: A comparison between 1-D multi-layer modeling approach and 3-D ray tracing

NASA Astrophysics Data System (ADS)

Srinivasan, V.; Yiwen, X.; Ellis, A.; Christensen, A.; Borkiewic, K.; Cox, D.; Hart, J.; Long, S.; Marshall-Colon, A.

2016-12-01

The distribution of absorbed solar radiation in the photosynthetically active region wavelength (PAR) within plant canopies plays a critical role in determining photosynthetic carbon uptake and its associated transpiration. The vertical distribution of leaf area, leaf angles, leaf absorptivity and reflectivity within the canopy, affect the distribution of PAR absorbed throughout the canopy. While the upper canopy sunlit leaves absorb most of the incoming PAR and hence contribute most towards total canopy carbon uptake, the lower canopy shaded leaves which receive mostly lower intensity diffuse PAR make significant contributions towards plant carbon uptake. Most detailed vegetation models use a 1-D vertical multi-layer approach to model the sunlight and shaded canopy leaf fractions, and quantify the direct and diffuse radiation absorbed by the respective leaf fractions. However, this approach is only applicable under canopy closure conditions, and furthermore it fails to accurately capture the effects of diurnally varying leaf angle distributions in some plant canopies. Here, we show by using a 3-D ray tracing model which uses an explicit 3-D canopy structure that enforces no conditions about canopy closure, that the effects of diurnal variation of canopy leaf angle distributions better match with observed data. Our comparative analysis performed on soybean crop canopies between 3-D ray tracing model and the multi-layer model shows that the distribution of absorbed direct PAR is not exponential while, the distribution of absorbed diffuse PAR radiation within plant canopies is exponential. These results show the multi-layer model to significantly over-predict canopy PAR absorbed, and in turn significantly overestimate photosynthetic carbon uptake by up to 13% and canopy transpiration by 7% under mid-day sun conditions as verified through our canopy chamber experiments. Our results indicate that current detailed 1-D multi-layer canopy radiation attenuation models significantly over predict canopy radiation absorption and its associated canopy photosynthetic and transpiration fluxes, and use of a 3-D ray tracing model provides more realistic predictions of leaf canopy integrated fluxes of carbon and water.

Hydraulics and gas exchange recover more rapidly from severe drought stress in small pot-grown grapevines than in field-grown plants.

PubMed

Romero, Pascual; Botía, Pablo; Keller, Markus

2017-09-01

Modifications of plant hydraulics and shoot resistances (R shoot ) induced by water withholding followed by rewatering, and their relationships with plant water status, leaf gas exchange and water use efficiency at the leaf level, were investigated in pot-grown and field-grown, own-rooted Syrah grapevines in an arid climate. Water stress induced anisohydric behavior, gradually reducing stomatal conductance (g s ) and leaf photosynthesis (A) in response to decreasing midday stem water potential (Ψ s ). Water stress also rapidly increased intrinsic water-use efficiency (A/g s ); this effect persisted for many days after rewatering. Whole-plant (K plant ), canopy (K canopy ), shoot (K shoot ) and leaf (K leaf ) hydraulic conductances decreased during water stress, in tune with the gradual decrease in Ψ s , leaf gas exchange and whole plant water use. Water-stressed vines also had a lower Ψ gradient between stem and leaf (ΔΨ l ), which was correlated with lower leaf transpiration rate (E). E and ΔΨ l increased with increasing vapour pressure deficit (VPD) in non-stressed control vines but not in stressed vines. Perfusion of xylem-mobile dye showed that water flow to petioles and leaves was substantially reduced or even stopped under moderate and severe drought stress. Leaf blade hydraulic resistance accounted for most of the total shoot resistance. However, hydraulic conductance of the whole root system (K root ) was not significantly reduced until water stress became very severe in pot-grown vines. Significant correlations between K plant , K canopy and Ψ s , K canopy and leaf gas exchange, K leaf and Ψ s , and K leaf and A support a link between water supply, leaf water status and gas exchange. Upon re-watering, Ψ s recovered faster than gas exchange and leaf-shoot hydraulics. A gradual recovery of hydraulic functionality of plant organs was also observed, the leaves being the last to recover after rewatering. In pot-grown vines, K canopy recovered rather quickly following restoration of Ψ s , although gas exchange recovery did not directly depend on recovery of K canopy . In field-grown vines, recovery of water status, gas exchange and hydraulic functionality was slower than in pot-grown plants, and low g s after rewatering was related to sustained decreased K plant , K canopy and K shoot and lower water transport to leaves. These results suggest that caution should be exercised when scaling up conclusions from experiments with small pot-grown plants to field conditions. Copyright © 2017 Elsevier GmbH. All rights reserved.

A breeze-driven current on sloped littoral waters

NASA Astrophysics Data System (ADS)

Tohidi, A.; Jamali, M.

2017-12-01

Various natural phenomena, e. g. uniform/non-uniform solar radiation and diurnal cycles, affect water circulation patterns through aquatic canopies, that is (usually shallow) shorelines of the rivers, lakes, and lagoons. Amongst these factors is vegetation that, plays a crucial role in conserving and dispersing the nutrients, oxygen, temperature, and generally regulating the life and interactions of organisms with each other (ecology) in aquatic canopies. So far, however, very little attention has been paid to the effects of very low, breeze-like, winds over the water surface in these vegetated regions. In this exploratory study, the evolution of a breeze-driven gravity current traveling up the slope towards the shorelines is shown, experimentally. The flow is characterized using Particle Image Velocimetry (PIV) technique. In addition, a detailed dimensional analysis of the parameter space of the phenomenon is conducted. The results strongly corroborate the experimental observations.

The impact of modifying antenna size of photosystem II on canopy photosynthetic efficiency – development of a new canopy photosynthesis model scaling from metabolism to canopy level processes

USDA-ARS?s Scientific Manuscript database

Canopy photosynthesis describes photosynthesis of an entire crop field and positively correlates with biomass production. Much effort in crop breeding has focused on improving canopy architecture and hence light distribution inside the canopy. Here, we develop a new integrated canopy photosynthesis ...

Foggy days and dry nights determine crown-level water balance in a seasonal tropical Montane cloud forest.

PubMed

Gotsch, Sybil G; Asbjornsen, Heidi; Holwerda, Friso; Goldsmith, Gregory R; Weintraub, Alexis E; Dawson, Todd E

2014-01-01

The ecophysiology of tropical montane cloud forest (TMCF) trees is influenced by crown-level microclimate factors including regular mist/fog water inputs, and large variations in evaporative demand, which in turn can significantly impact water balance. We investigated the effect of such microclimatic factors on canopy ecophysiology and branch-level water balance in the dry season of a seasonal TMCF in Veracruz, Mexico, by quantifying both water inputs (via foliar uptake, FU) and outputs (day- and night-time transpiration, NT). Measurements of sap flow, stomatal conductance, leaf water potential and pressure-volume relations were obtained in Quercus lanceifolia, a canopy-dominant tree species. Our results indicate that FU occurred 34% of the time and led to the recovery of 9% (24 ± 9.1 L) of all the dry-season water transpired from individual branches. Capacity for FU was independently verified for seven additional common tree species. NT accounted for approximately 17% (46 L) of dry-season water loss. There was a strong correlation between FU and the duration of leaf wetness events (fog and/or rain), as well as between NT and the night-time vapour pressure deficit. Our results show the clear importance of fog and NT for the canopy water relations of Q. lanceifolia. © 2013 John Wiley & Sons Ltd.

Modeling Environmental Controls on Tree Water Use at Different Temporal scales

NASA Astrophysics Data System (ADS)

Guan, H.; Wang, H.; Simmons, C. T.

2014-12-01

Vegetation covers 70% of land surface, significantly influencing water and carbon exchange between land surface and the atmosphere. Vegetation transpiration (Et) contributes 80% of the global terrestrial evapotranspiration, making an adequate illustration of how important vegetation is to any hydrological or climatological applications. Transpiration can be estimated through upscaling from sap flow measurements on selected trees. Alternatively, transpiration (or tree water use for forests) can be correlated with environmental variables or estimated in land surface simulations in which a canopy conductance (gc) model is often used. Transpiration and canopy conductance are constrained by supply and demand control factors. Some previous studies estimated Et and gc considering the stresses from both the supply (soil water condition) and demand (e.g. temperature, vapor pressure deficit, solar radiation) factors, while some only considered the demand controls. In this study, we examined the performance of two types of models at daily and half-hourly scales for transpiration and canopy conductance modelling based on a native species in South Australia. The results show that the significance of soil water condition for Et and gc modelling varies with time scales. The model parameter values also vary across time scales. This result calls for attention in choosing models and parameter values for soil-plant-atmosphere continuum and land surface modeling.

Modeling Stand-Scale Patterns in Evapotranspiration and Soil Moisture in a Heterogeneous Plant Canopy: A Coupled Subsurface-Land Surface Approach

NASA Astrophysics Data System (ADS)

Miller, G. R.; Gou, S.; Ferguson, I. M.; Maxwell, R. M.

2011-12-01

Savanna ecosystems present a well-known modeling challenge; understory grasses and overstory woody vegetation combine to form an open, heterogeneous canopy that creates strong spatial differences in soil moisture and evapotranspiration rates. In this analysis, we used ParFlow.CLM to create a stand-scale model of the Tonzi Ranch oak savanna, based on extensive topography, vegetation, soil, and hydrogeology data collected at the site. Measurements included canopy distribution and ground surface elevation from airborne Lidar, depth to groundwater from deep piezometers, soil and rock hydraulic conductivity, and leaf area index. We then compared the results to the site's long-term data records of radiative flux partitioning, obtained using the eddy-covariance method, and soil moisture, collected via a distributed network of capacitance probes. In order to obtain good agreement between the measured and modeled values, we identified several necessary modifications to the current CLM parameterization. These changes included the addition of a "winter grass" type and the alteration of the root structure and water stress functions to accommodate uptake of groundwater by deep roots. Finally, we compared variograms of site parameters and response variables and performed a scaling analysis relating ET and soil moisture variance to sampling size.

Spatially explicit modelling of forest structure and function using airborne lidar and hyperspectral remote sensing data combined with micrometeorological measurements

NASA Astrophysics Data System (ADS)

Thomas, Valerie Anne

This research models canopy-scale photosynthesis at the Groundhog River Flux Site through the integration of high-resolution airborne remote sensing data and micrometeorological measurements collected from a flux tower. Light detection and ranging (lidar) data are analysed to derive models of tree structure, including: canopy height, basal area, crown closure, and average aboveground biomass. Lidar and hyperspectral remote sensing data are used to model canopy chlorophyll (Chl) and carotenoid concentrations (known to be good indicators of photosynthesis). The integration of lidar and hyperspectral data is applied to derive spatially explicit models of the fraction of photosynthetically active radiation (fPAR) absorbed by the canopy as well as a species classification for the site. These products are integrated with flux tower meteorological measurements (i.e., air temperature and global solar radiation) collected on a continuous basis over 2004 to apply the C-Fix model of carbon exchange to the site. Results demonstrate that high resolution lidar and lidar-hyperspectral integration techniques perform well in the boreal mixedwood environment. Lidar models are well correlated with forest structure, despite the complexities introduced in the mixedwood case (e.g., r2=0.84, 0.89, 0.60, and 0.91, for mean dominant height, basal area, crown closure, and average aboveground biomass). Strong relationships are also shown for canopy scale chlorophyll/carotenoid concentration analysis using integrated lidar-hyperspectral techniques (e.g., r2=0.84, 0.84, and 0.82 for Chl(a), Chl(a+b), and Chl(b)). Examination of the spatially explicit models of fPAR reveal distinct spatial patterns which become increasingly apparent throughout the season due to the variation in species groupings (and canopy chlorophyll concentration) within the 1 km radius surrounding the flux tower. Comparison of results from the modified local-scale version of the C-Fix model to tower gross ecosystem productivity (GEP) demonstrate a good correlation to flux tower measured GEP (r2=0.70 for 10 day averages), with the largest deviations occurring in June-July. This research has direct benefits for forest inventory mapping and management practices; mapping of canopy physiology and biochemical constituents related to forest health; and scaling and direct comparison to large resolution satellite models to help bridge the gap between the local-scale measurements at flux towers and predictions derived from continental-scale carbon models.

Investigation of the Loads on a Conventional Front and Rear Sliding Canopy

NASA Technical Reports Server (NTRS)

Dexter, Howard E.; Rickey, Edward A.

1947-01-01

As one phase of a comprehensive canopy load investigation, conventional front and rear sliding canopies which are typified by installation on the SB2C-4E airplane, were tested in the Langley full-scale tunnel to determine the pressure distributions and the aerodynamic loads on the canopies. A preliminary analysis of the results of these tests is presented in this report. Plots are presented that show the distribution of pressure at four longitudinal stations through each canopy for a range of conditions selected to determine the effects of varying canopy position, yaw, lift coefficient, and power. The results indicate that the maximum loads, based on the external-internal pressure differential, for the front and rear canopies were obtained with the airplane simulating the high speed flight condition. The highest loading on the front canopy was in the exploding direction for the configuration with the front and rear canopies closed. The highest loads on the rear canopy were in the crushing direction with the front canopy open and the rear canopy closed. For most of the simulated flight conditions, the highest loads on the front canopy, per unit area, were over twice as great as the highest loads on the rear canopy when the comparison was made for the most critical canopy configuration in each case. The external pressure distribution over the front and rear canopies, which were fairly symmetrical to 0 degree angle of yaw, were greatly distorted at other yaw attitudes, particularly for the propeller operating conditions. These distorted pressure distributions resulted in local exploding and crushing loads on both canopies which were often considerably higher than the average canopy loads.

Competition and facilitation structure plant communities under nurse tree canopies in extremely stressful environments.

PubMed

Al-Namazi, Ali A; El-Bana, Magdy I; Bonser, Stephen P

2017-04-01

Nurse plant facilitation in stressful environments can produce an environment with relatively low stress under its canopy. These nurse plants may produce the conditions promoting intense competition between coexisting species under the canopy, and canopies may establish stress gradients, where stress increases toward the edge of the canopy. Competition and facilitation on these stress gradients may control species distributions in the communities under canopies. We tested the following predictions: (1) interactions between understory species shift from competition to facilitation in habitats experiencing increasing stress from the center to the edge of canopy of a nurse plant, and (2) species distributions in understory communities are controlled by competitive interactions at the center of canopy, and facilitation at the edge of the canopy. We tested these predictions using a neighbor removal experiment under nurse trees growing in arid environments. Established individuals of each of four of the most common herbaceous species in the understory were used in the experiment. Two species were more frequent in the center of the canopy, and two species were more frequent at the edge of the canopy. Established individuals of each species were subjected to neighbor removal or control treatments in both canopy center and edge habitats. We found a shift from competitive to facilitative interactions from the center to the edge of the canopy. The shift in the effect of neighbors on the target species can help to explain species distributions in these canopies. Canopy-dominant species only perform well in the presence of neighbors in the edge microhabitat. Competition from canopy-dominant species can also limit the performance of edge-dominant species in the canopy microhabitat. The shift from competition to facilitation under nurse plant canopies can structure the understory communities in extremely stressful environments.

Effect of subalpine canopy removal on snowpack, soil solution, and nutrient export, Fraser Experimental Forest, CO

USGS Publications Warehouse

Stottlemyer, R.; Troendle, C.A.

1999-01-01

Research on the effects of vegetation manipulation on snowpack, soil water, and streamwater chemistry and flux has been underway at the Fraser Experimental Forest (FEF), CO, since 1982. Greater than 95% of FEF snowmelt passes through watersheds as subsurface flow where soil processes significantly alter meltwater chemistry. To better understand the mechanisms accounting for annual variation in watershed streamwater ion concentration and flux with snowmelt, we studied subsurface water flow, its ion concentration, and flux in conterminous forested and clear cut plots. Repetitive patterns in subsurface flow and chemistry were apparent. Control plot subsurface flow chemistry had the highest ion concentrations in late winter and fall. When shallow subsurface flow occurred, its Ca2+, SO42-, and HCO3- concentrations were lower and K+ higher than deep flow. The percentage of Ca2+, NO3-, SO42-, and HCO3- flux in shallow depths was less and K+ slightly greater than the percentage of total flow. Canopy removal increased precipitation reaching the forest floor by about 40%, increased peak snowpack water equivalent (SWE) > 35%, increased the average snowpack Ca2+, NO3-, and NH4+ content, reduced the snowpack K+ content, and increased the runoff four-fold. Clear cutting doubled the percentage of subsurface flow at shallow depths, and increased K+ concentration in shallow subsurface flow and NO3- concentrations in both shallow and deep flow. The percentage change in total Ca2+, SO42-, and HCO3- flux in shallow depths was less than the change in water flux, while that of K+ and NO3- flux was greater. Relative to the control, in the clear cut the percentage of total Ca2+ flux at shallow depths increased from 5 to 12%, SO42- 5.4 to 12%, HCO3- from 5.6 to 8.7%, K+ from 6 to 35%, and NO3- from 2.7 to 17%. The increases in Ca2+ and SO42- flux were proportional to the increase in water flux, the flux of HCO3- increased proportionally less than water flux, and NO3- and K+ were proportionally greater than water flux. Increased subsurface flow accounted for most of the increase in non-limiting nutrient loss. For limiting nutrients, loss of plant uptake and increased shallow subsurface flow accounted for the greater loss. Seasonal ion concentration patterns in streamwater and subsurface flow were similar.Research on the effects of vegetation manipulation on snowpack, soil water, and streamwater chemistry and flux has been underway at the Fraser Experimental Forest (FEF), CO, since 1982. Greater than 95% of FEF snowmelt passes through watersheds as subsurface flow where soil processes significantly alter meltwater chemistry. To better understand the mechanisms accounting for annual variation in watershed streamwater ion concentration and flux with snowmelt, we studied subsurface water flow, its ion concentration, and flux in conterminous forested and clear cut plots. Repetitive patterns in subsurface flow and chemistry were apparent. Control plot subsurface flow chemistry had the highest ion concentrations in late winter and fall. When shallow subsurface flow occurred, its Ca2+, SO42-, and HCO3- concentrations were lower and K+ higher than deep flow. The percentage of Ca2+, NO3-, SO42-, and HCO3- flux in shallow depths was less and K+ slightly greater than the percentage of total flow. Canopy removal increased precipitation reaching the forest floor by about 40%, increased peak snowpack water equivalent (SWE) > 35%, increased the average snowpack Ca2+, NO3-, and NH4+ content, reduced the snowpack K+ content, and increased the runoff four-fold. Clear cutting doubled the percentage of subsurface flow at shallow depths, and increased K+ concentration in shallow subsurface flow and NO3- concentrations in both shallow and deep flow. The percentage change in total Ca2+, SO42-, and HCO3- flux in shallow depths was less than the change in water flux, while that of K+ and NO3- flux was greater. Relative to the control, in the clear cut the percentage of total Ca

Testing Small CPAS Parachutes Using HIVAS

NASA Technical Reports Server (NTRS)

Ray, Eric S.; Hennings, Elsa; Bernatovich, Michael A.

2013-01-01

The High Velocity Airflow System (HIVAS) facility at the Naval Air Warfare Center (NAWC) at China Lake was successfully used as an alternative to flight test to determine parachute drag performance of two small Capsule Parachute Assembly System (CPAS) canopies. A similar parachute with known performance was also tested as a control. Realtime computations of drag coefficient were unrealistically low. This is because HIVAS produces a non-uniform flow which rapidly decays from a high central core flow. Additional calibration runs were performed to characterize this flow assuming radial symmetry from the centerline. The flow field was used to post-process effective flow velocities at each throttle setting and parachute diameter using the definition of the momentum flux factor. Because one parachute had significant oscillations, additional calculations were required to estimate the projected flow at off-axis angles. The resulting drag data from HIVAS compared favorably to previously estimated parachute performance based on scaled data from analogous CPAS parachutes. The data will improve drag area distributions in the next version of the CPAS Model Memo.

Field guide to red tree vole nests

Treesearch

Damon B. Lesmeister; James K. Swingle

2017-01-01

Surveys for red tree vole (Arborimus longicaudus) nests require tree climbing because the species is a highly specialized arboreal rodent that live in the tree canopy of coniferous forests in western Oregon and northwestern California. Tree voles are associated with old coniferous forest (≥80 years old) that are structurally complex, but are often...

Design and performance of B4WarmED, an aboveground and belowground free-air warming experiment at the temperate-boreal forest ecotone

USDA-ARS?s Scientific Manuscript database

Conducting manipulative climate change experiments in forests is challenging, given their spatial heterogeneity and canopy complexity. One specific challenge involves warming both plants and soils to depth in ecosystems without much bare ground. We describe the design, implementation, and performanc...

Spatial patterns of throughfall isotopic composition at the event and seasonal timescales

Treesearch

Scott T. Allen; Richard F. Keim; Jeffrey J. McDonnell

2015-01-01

Spatial variability of throughfall isotopic composition in forests is indicative of complex processes occurring in the canopy and remains insufficiently understood to properly characterize precipitation inputs to the catchment water balance. Here we investigate variability of throughfall isotopic composition with the objectives: (1) to quantify the spatial variability...

Biodiversity loss in Latin American coffee landscapes: review of the evidence on ants, birds, and trees

Treesearch

S.M. Philpott; W.J. Arendt; I. Armbrecht; P. Bichier; T.V. Diestch; C. Gordon; R. Greenberg; I. Perfecto; R. Reynoso-Santos; L. Soto-Pinto; C. Tejeda-Cruz; G. Williams-Linera; J. Valenzuela; J.M. Zolotoff

2008-01-01

Studies have documented biodiversity losses due to intensification of coffee management (reduction in canopy richness and complexity). Nevertheless, questions remain regarding relative sensitivity of different taxa, habitat specialists, and functional groups, and whether implications for biodiversity conservation vary across regions.We quantitatively reviewed data from...

Topography-mediated controls on local vegetation phenology estimated from MODIS vegetation index

Treesearch

Taehee Hwang; Conghe Song; James Vose; Lawrence Band

2011-01-01

Forest canopy phenology is an important constraint on annual water and carbon budgets, and responds to regional interannual climate variation. In steep terrain, there are complex spatial variations in phenology due to topographic influences on microclimate, community composition, and available soil moisture. In this study, we investigate spatial patterns of phenology...

Amazon forest structure generates diurnal and seasonal variability in light utilization

Treesearch

Douglas C. Morton; Jeremy Rubio; Bruce D. Cook; Jean-Philippe Gastellu-Etchegorry; Marcos Longo; Hyeungu Choi; Maria Hunter; Michael Keller

2016-01-01

The complex three-dimensional (3-D) structure of tropical forests generates a diversity of light environments for canopy and understory trees. Understanding diurnal and seasonal changes in light availability is critical for interpreting measurements of net ecosystem exchange and improving ecosystem models. Here, we used the Discrete Anisotropic Radiative Transfer (DART...

Dynamics of skimming flow in the wake of a vegetation patch

NASA Astrophysics Data System (ADS)

Mayaud, Jerome R.; Wiggs, Giles F. S.; Bailey, Richard M.

2016-09-01

Dryland vegetation is often spatially patchy, and so affects wind flow in complex ways. Theoretical models and wind tunnel testing have shown that skimming flow develops above vegetation patches at high plant densities, resulting in little or no wind erosion in these zones. Understanding the dynamics of skimming flow is therefore important for predicting sediment transport and bedform development in dryland areas. However, no field-based data are available describing turbulent airflow dynamics in the wake of vegetation patches. In this study, turbulent wind flow was examined using high-frequency (10 Hz) sonic anemometry at four measurement heights (0.30 m, 0.55 m, 1.10 m and 1.65 m) along a transect in the lee of an extensive patch of shrubs (z = 1.10 m height) in Namibia. Spatial variations in mean wind velocity, horizontal Reynolds stresses and coherent turbulent structures were analysed. We found that wind velocity in the wake of the patch effectively recovered over ∼12 patch heights (h) downwind, which is 2-5 h longer than previously reported recovery lengths for individual vegetation elements and two-dimensional wind fences. This longer recovery can be attributed to a lack of flow moving around the obstacle in the patch case. The step-change in roughness between the patch canopy and the bare surface in its wake resulted in an initial peak in resultant horizontal shear stress (τr) followed by significant decrease downwind. In contrast to τr , horizontal normal Reynolds stress (u‧2 ‾) progressively increased along the patch wake. A separation of the upper shear layer at the leeside edge of the patch was observed, and a convergence of τr curves implies the formation of a constant stress layer by ∼20 h downwind. The use of τr at multiple heights is found to be a useful tool for identifying flow equilibration in complex aerodynamic regimes. Quadrant analysis revealed elevated frequencies of Q2 (ejection) and Q4 (sweep) events in the immediate lee of the patch, which contributed to the observed high levels of shear stress. The increasing downwind contribution of Q1 (outward interaction) events, which coincides with greater u‧2 ‾ and wind velocity, suggests that sediment transport potential increases with greater distance from the patch edge. Determining realistic, field-derived constraints on turbulent airflow dynamics in the wakes of vegetation patches is crucial for accurately parameterising sediment transport potential in larger-scale dryland landscape models. This will help to improve our understanding of how semi-vegetated desert surfaces might react to future environmental and anthropogenic stresses.

Interactive effects of ozone and climate on water use, soil moisture content and streamflow in a southern Appalachian forest in the USA

Treesearch

S.B. McLaughlin; S.D. Wullschleger; G. Sun; M. Nosal

2007-01-01

Documentation of the degree and direction of effects of ozone on transpiration of canopies of mature forest trees is critically needed to model ozone effects on forest water use and growth in a warmer future climate.Patterns of sap flow in stems and soil moisture in the rooting zones of mature trees, coupled with late-season...

Watershed modeling and development of ecological flows in the Apalachicola-Chattahoochee-Flint River Basin, Alabama, Florida, and Georgia

Treesearch

William Hughes; Mary Freeman; Elliott Jones; John Jones; Jacob Lafontaine; Jaime Painter; Lynn Torak; Steve Walsh

2016-01-01

In Grant Parish, LA, increases in overstory basal area, canopy cover, and development of understory woody plants reduce over the last 50 years, the Apalachicola-Chattahoochee- Flint (ACF) Basin in Alabama, Florida, and Georgia has undergone extensive development of water resources for municipal and industrial supplies, power generation, and agriculture. Concurrent with...

Melville Island, Australia

NASA Technical Reports Server (NTRS)

1992-01-01

Melville Island, just off the coast of Darwin, Northern Territory, Australia (11.5S, 131.0E) is a sparsely inhabited tropical island with heavy woodland concentrations. The widespread and prominant smoke plumes were most likely set to renew pasture under open canopy woodland. Soil erosion is almost non- existant as can be seen by the clear and clean river flow. The offshore sediments are coastal current borne deposits from King Sound to the west.

A Testbed for Model Development

NASA Astrophysics Data System (ADS)

Berry, J. A.; Van der Tol, C.; Kornfeld, A.

2014-12-01

Carbon cycle and land-surface models used in global simulations need to be computationally efficient and have a high standard of software engineering. These models also make a number of scaling assumptions to simplify the representation of complex biochemical and structural properties of ecosystems. This makes it difficult to use these models to test new ideas for parameterizations or to evaluate scaling assumptions. The stripped down nature of these models also makes it difficult to "connect" with current disciplinary research which tends to be focused on much more nuanced topics than can be included in the models. In our opinion/experience this indicates the need for another type of model that can more faithfully represent the complexity ecosystems and which has the flexibility to change or interchange parameterizations and to run optimization codes for calibration. We have used the SCOPE (Soil Canopy Observation, Photochemistry and Energy fluxes) model in this way to develop, calibrate, and test parameterizations for solar induced chlorophyll fluorescence, OCS exchange and stomatal parameterizations at the canopy scale. Examples of the data sets and procedures used to develop and test new parameterizations are presented.

Evolutions Of Diff-Tomo For Sensing Subcanopy Deformations And Height-Varying Temporal Coherence

NASA Astrophysics Data System (ADS)

Lombardini, Fabrizio; Cai, Francesco

2012-01-01

Interest is continuing to grow in advanced interferometric SAR methods for sensing complex scenarios with multiple (layover or volumetric) scatterers mapped in the SAR cell. Multibaseline SAR tomographic (3D) elevation beam forming is a promising technique in this field. Recently, the Tomo concept has been integrated with the differential interferometry concept, producing the advanced “differential tomography” (Diff-Tomo, “4D”) processing mode which furnishes “space-time” signatures of multiple scatterer dynamics in the SAR cell. Advances in the application of this new framework are investigated for complex volume scattering scenarios including temporal signal variations, both from scatterer temporal decorrelation and deformation motions. In particular, new results are reported concerning the potentials of Diff-Tomo for the analysis of forest scenarios, based on the original concept of the space-time signatures of temporal decorrelation. E-SAR P-band data results are expanded of tomography robust to temporal decorrelation, and first trials are reported of separation of different temporal decorrelation mechanisms of canopy and ground, and of sensing possible sub-canopy subsidences.

Estimating forest canopy fuel parameters using LIDAR data.

Treesearch

Hans-Erik Andersen; Robert J. McGaughey; Stephen E. Reutebuch

2005-01-01

Fire researchers and resource managers are dependent upon accurate, spatially-explicit forest structure information to support the application of forest fire behavior models. In particular, reliable estimates of several critical forest canopy structure metrics, including canopy bulk density, canopy height, canopy fuel weight, and canopy base height, are required to...

Building capacity for providing canopy cover and canopy height at FIA plot locations using high-resolution imagery and leaf-off LiDAR

Treesearch

Rachel Riemann; Jarlath O' Neil-Dunne; Greg C. Liknes

2012-01-01

Tree canopy cover and canopy height information are essential for estimating volume, biomass, and carbon; defining forest cover; and characterizing wildlife habitat. The amount of tree canopy cover also influences water quality and quantity in both rural and urban settings. Tree canopy cover and canopy height are currently collected at FIA plots either in the field or...

Airborne Lidar-Based Estimates of Tropical Forest Structure in Complex Terrain: Opportunities and Trade-Offs for REDD+

NASA Technical Reports Server (NTRS)

Leitold, Veronika; Keller, Michael; Morton, Douglas C.; Cook, Bruce D.; Shimabukuro, Yosio E.

2015-01-01

Background: Carbon stocks and fluxes in tropical forests remain large sources of uncertainty in the global carbon budget. Airborne lidar remote sensing is a powerful tool for estimating aboveground biomass, provided that lidar measurements penetrate dense forest vegetation to generate accurate estimates of surface topography and canopy heights. Tropical forest areas with complex topography present a challenge for lidar remote sensing. Results: We compared digital terrain models (DTM) derived from airborne lidar data from a mountainous region of the Atlantic Forest in Brazil to 35 ground control points measured with survey grade GNSS receivers. The terrain model generated from full-density (approx. 20 returns/sq m) data was highly accurate (mean signed error of 0.19 +/-0.97 m), while those derived from reduced-density datasets (8/sq m, 4/sq m, 2/sq m and 1/sq m) were increasingly less accurate. Canopy heights calculated from reduced-density lidar data declined as data density decreased due to the inability to accurately model the terrain surface. For lidar return densities below 4/sq m, the bias in height estimates translated into errors of 80-125 Mg/ha in predicted aboveground biomass. Conclusions: Given the growing emphasis on the use of airborne lidar for forest management, carbon monitoring, and conservation efforts, the results of this study highlight the importance of careful survey planning and consistent sampling for accurate quantification of aboveground biomass stocks and dynamics. Approaches that rely primarily on canopy height to estimate aboveground biomass are sensitive to DTM errors from variability in lidar sampling density.

Airborne lidar-based estimates of tropical forest structure in complex terrain: opportunities and trade-offs for REDD+

PubMed

Leitold, Veronika; Keller, Michael; Morton, Douglas C; Cook, Bruce D; Shimabukuro, Yosio E

2015-12-01

Carbon stocks and fluxes in tropical forests remain large sources of uncertainty in the global carbon budget. Airborne lidar remote sensing is a powerful tool for estimating aboveground biomass, provided that lidar measurements penetrate dense forest vegetation to generate accurate estimates of surface topography and canopy heights. Tropical forest areas with complex topography present a challenge for lidar remote sensing. We compared digital terrain models (DTM) derived from airborne lidar data from a mountainous region of the Atlantic Forest in Brazil to 35 ground control points measured with survey grade GNSS receivers. The terrain model generated from full-density (~20 returns m -2 ) data was highly accurate (mean signed error of 0.19 ± 0.97 m), while those derived from reduced-density datasets (8 m -2 , 4 m -2 , 2 m -2 and 1 m -2 ) were increasingly less accurate. Canopy heights calculated from reduced-density lidar data declined as data density decreased due to the inability to accurately model the terrain surface. For lidar return densities below 4 m -2 , the bias in height estimates translated into errors of 80-125 Mg ha -1 in predicted aboveground biomass. Given the growing emphasis on the use of airborne lidar for forest management, carbon monitoring, and conservation efforts, the results of this study highlight the importance of careful survey planning and consistent sampling for accurate quantification of aboveground biomass stocks and dynamics. Approaches that rely primarily on canopy height to estimate aboveground biomass are sensitive to DTM errors from variability in lidar sampling density.

Direct Scaling of Leaf-Resolving Biophysical Models from Leaves to Canopies

NASA Astrophysics Data System (ADS)

Bailey, B.; Mahaffee, W.; Hernandez Ochoa, M.

2017-12-01

Recent advances in the development of biophysical models and high-performance computing have enabled rapid increases in the level of detail that can be represented by simulations of plant systems. However, increasingly detailed models typically require increasingly detailed inputs, which can be a challenge to accurately specify. In this work, we explore the use of terrestrial LiDAR scanning data to accurately specify geometric inputs for high-resolution biophysical models that enables direct up-scaling of leaf-level biophysical processes. Terrestrial LiDAR scans generate "clouds" of millions of points that map out the geometric structure of the area of interest. However, points alone are often not particularly useful in generating geometric model inputs, as additional data processing techniques are required to provide necessary information regarding vegetation structure. A new method was developed that directly reconstructs as many leaves as possible that are in view of the LiDAR instrument, and uses a statistical backfilling technique to ensure that the overall leaf area and orientation distribution matches that of the actual vegetation being measured. This detailed structural data is used to provide inputs for leaf-resolving models of radiation, microclimate, evapotranspiration, and photosynthesis. Model complexity is afforded by utilizing graphics processing units (GPUs), which allows for simulations that resolve scales ranging from leaves to canopies. The model system was used to explore how heterogeneity in canopy architecture at various scales affects scaling of biophysical processes from leaves to canopies.

The role of forest floor and trees to the ecosystem scale methane budget of boreal forests

NASA Astrophysics Data System (ADS)

Pihlatie, Mari; Halmeenmäki, Elisa; Peltola, Olli; Haikarainen, Iikka; Heinonsalo, Jussi; Santalahti, Minna; Putkinen, Anuliina; Fritze, Hannu; Urban, Otmar; Machacova, Katerina

2016-04-01

Boreal forests are considered as a sink of atmospheric methane (CH4) due to the activity of CH4 oxidizing bacteria (methanotrophs) in the soil. This soil CH4 sink is especially strong for upland forest soils, whereas forests growing on organic soils may act as small sources due to the domination of CH4 production by methanogens in the anaerobic parts of the soil. The role of trees to the ecosystem-scale CH4 fluxes has until recently been neglected due to the perception that trees do not contribute to the CH4 exchange, and also due to difficulties in measuring the CH4 exchange from trees. Findings of aerobic CH4 formation in plants and emissions from tree-stems in temperate and tropical forests during the past decade demonstrate that our understanding of CH4 cycling in forest ecosystems is not complete. Especially the role of forest canopies still remain unresolved, and very little is known of CH4 fluxes from trees in boreal region. We measured the CH4 exchange of tree-stems and tree-canopies from pine (Pinus sylvestris), spruce (Picea abies) and birch (Betula pubescens, Betula pendula) trees growing in Southern Finland (SMEAR II station) on varying soil conditions, from upland mineral soils to paludified soil. We compared the CH4 fluxes from trees to forest-floor CH4 exchange, both measured by static chambers, and to CH4 fluxes measured above the forest canopy by a flux gradient technique. We link the CH4 fluxes from trees and forest floor to physiological activity of the trees, such as transpiration, sap-flow, CO2 net ecosystem exchange (NEE), soil properties such as temperature and moisture, and to the presence of CH4 producing methanogens and CH4 oxidizing methanotrophs in trees or soil. The above canopy CH4 flux measurements show that the whole forest ecosystem was a small source of CH4 over extended periods in the spring and summer 2012, 2014 and 2015. Throughout the 2013-2014 measurements, the forest floor was in total a net sink of CH4, with variation between high CH4 uptake in the dominating dry upland areas and high emissions from the few wet spots of the forest. All the studied tree species emitted small amounts of CH4 from the stems and shoots, with emission rates depending on the season, tree species and soil conditions. Especially, CH4 emissions from birch canopies were high and can therefore contribute significantly to the ecosystem-scale CH4 fluxes. Processes behind the canopy and stem CH4emission remain unresolved, however, ongoing analysis of the methanogens and methanotrophs within the plant-soil systems will reveal whether CH4 production or consumption is of microbial origin. Also, comparison of the CH4 fluxes from trees and forest floor to sap-flow, transpiration, and NEE as well as soil parameters will help to explain the seasonality and mechanisms involved in the CH4 emissions.

Application of Lidar remote sensing to the estimation of forest canopy and stand structure

NASA Astrophysics Data System (ADS)

Lefsky, Michael Andrew

A new remote sensing instrument, SLICER (Scanning Lidar Imager of Canopies by Echo Recovery), has been applied to the problem of remote sensing the canopy and stand structure of two groups of deciduous forests, Tulip Poplar-Oak stands in the vicinity of Annapolis, MD. and bottomland hardwood stands near Williamston, NC. The ability of the SLICER instrument to remotely sense the vertical distribution of canopy structure (Canopy Height Profile), bulk canopy transmittance, and several indices of canopy height has been successfully validated using twelve stands with coincident field and SLICER estimates of canopy structure. Principal components analysis has been applied to canopy height profiles from both field sites, and three significant factors were identified, each closely related to the amount of foliage in a recognizable layer of the forest, either understory, midstory, or overstory. The distribution of canopy structure to these layers is significantly correlated with the size and number of stems supporting them. The same layered structure was shown to apply to both field and SLICER remotely sensed canopy height profiles, and to apply to SLICER remotely sensed canopy profiles from both the bottomland hardwood stands in the coastal plain of North Carolina, and to mesic Tulip-Poplars stands in the upland coastal plain of Maryland. Linear regressions have demonstrated that canopy and stand structure are correlated to both a statistically significant and useful degree. Stand age and stem density is more highly correlated to stand height, while stand basal area and aboveground biomass are more closely related to a new measure of canopy structure, the quadratic mean canopy height. A geometric model of canopy structure has been shown to explain the differing relationships between canopy structure and stand basal area for stands of Eastern Deciduous Forest and Douglas Fir Forest.

Effects of different types of moderate severity disturbance on forest structural complexity and ecosystem functioning: A story of ice and fire

NASA Astrophysics Data System (ADS)

Fahey, R. T.; Atkins, J.; Gough, C. M.; Hardiman, B. S.; Haber, L.; Stuart-Haentjens, E.; David, O.; Campbell, J. L.; Rustad, L.; Duffy, M.

2017-12-01

Disturbances that alter the structure and function of forest ecosystems occur along a continuum of severity. In contrast to the extremes of the disturbance gradient (i.e., stand-replacing disturbance and small gap formation), moderate severity disturbances are poorly understood, even though they make up the majority of the gradient and their spatial extent (and likely overall importance to regional disturbance regimes) often exceeds that of more severe disturbances. Moderate severity disturbances originate from a variety of causes, such as fires, ice storms, or pest and pathogen outbreaks, and each of these could reshape structure and function in different ways. Observational data from a limited number of sites shows that moderate disturbance can increase ecosystem complexity, but the generality of this effect has not been tested across a broad range of disturbance types and severities. Here, we utilize data from a set of five case studies of experimental or natural moderate disturbance to assess the effects of different types and severities of disturbance on forest canopy structural complexity (CSC) and the relationship of canopy structure with ecosystem functioning. Using pre- and post-disturbance measures of CSC derived from aerial and terrestrial LiDAR, UAV imagery, and Landsat data we quantified changes in CSC following an experimental ice storm, a low-severity surface fire, Beech Bark Disease and Hemlock Wooly Adelgid outbreaks, and experimental accelerated succession. Our initial findings indicate that different disturbance types have highly variable effects on CSC, and also that progressive increases in disturbance severity alter CSC differently among disturbance types. Differential effects of variable disturbance types on CSC has implications for the carbon cycle, as forest structure is strongly linked with both growth-limiting resource (e.g., nutrients and light) acquisition and net primary productivity. Understanding how different types and severities of moderate disturbance affect canopy structural complexity is thus crucial to informing and improving modeling the earth system and predicting how global shifts in moderate disturbance type, frequency, and severity will alter the land carbon sink.

Multi- and hyperspectral scene modeling

NASA Astrophysics Data System (ADS)

Borel, Christoph C.; Tuttle, Ronald F.

2011-06-01

This paper shows how to use a public domain raytracer POV-Ray (Persistence Of Vision Raytracer) to render multiand hyper-spectral scenes. The scripting environment allows automatic changing of the reflectance and transmittance parameters. The radiosity rendering mode allows accurate simulation of multiple-reflections between surfaces and also allows semi-transparent surfaces such as plant leaves. We show that POV-Ray computes occlusion accurately using a test scene with two blocks under a uniform sky. A complex scene representing a plant canopy is generated using a few lines of script. With appropriate rendering settings, shadows cast by leaves are rendered in many bands. Comparing single and multiple reflection renderings, the effect of multiple reflections is clearly visible and accounts for 25% of the overall apparent canopy reflectance in the near infrared.

Variation in woody plant mortality and dieback from severe drought among soils, plant groups, and species within a northern Arizona ecotone.

PubMed

Koepke, Dan F; Kolb, Thomas E; Adams, Henry D

2010-08-01

Vegetation change from drought-induced mortality can alter ecosystem community structure, biodiversity, and services. Although drought-induced mortality of woody plants has increased globally with recent warming, influences of soil type, tree and shrub groups, and species are poorly understood. Following the severe 2002 drought in northern Arizona, we surveyed woody plant mortality and canopy dieback of live trees and shrubs at the forest-woodland ecotone on soils derived from three soil parent materials (cinder, flow basalt, sedimentary) that differed in texture and rockiness. Our first of three major findings was that soil parent material had little effect on mortality of both trees and shrubs, yet canopy dieback of trees was influenced by parent material; dieback was highest on the cinder for pinyon pine (Pinus edulis) and one-seed juniper (Juniperus monosperma). Ponderosa pine (Pinus ponderosa) dieback was not sensitive to parent material. Second, shrubs had similar mortality, but greater canopy dieback, than trees. Third, pinyon and ponderosa pines had greater mortality than juniper, yet juniper had greater dieback, reflecting different hydraulic characteristics among these tree species. Our results show that impacts of severe drought on woody plants differed among tree species and tree and shrub groups, and such impacts were widespread over different soils in the southwestern U.S. Increasing frequency of severe drought with climate warming will likely cause similar mortality to trees and shrubs over major soil types at the forest-woodland ecotone in this region, but due to greater mortality of other tree species, tree cover will shift from a mixture of species to dominance by junipers and shrubs. Surviving junipers and shrubs will also likely have diminished leaf area due to canopy dieback.

Challenges in Estimating Evapotranspiration of Young Sparse Stands in a Boreal Forest of Eastern-Canada

NASA Astrophysics Data System (ADS)

Hadiwijaya, B.; Nadeau, D.; Pépin, S.

2017-12-01

Forest evapotranspiration is the sum of transpiration, evaporation from intercepted rainfall by the canopy and soil evaporation, each component being governed by distinct time scales and mechanisms. Therefore, to develop a simple, yet realistic, model to estimate evapotranspiration over forested areas, field measurements must capture the full chronological sequence of events taking place following rainfall. This becomes a challenge in the case of young sparse forest stands due to large diversity in canopy covers and leaf area indices, which leads to strong spatial variation in intercepted rainfall by the canopy. Unfortunately, very few studies have focused on transition between the dry and wet canopy conditions. The objectives of this study are to investigate each element of rain interception and intercepted water loss, to characterize water loss partitioning processes based on precipitation rate, elapsed time and time-sequence events. To do this, we conducted a summer field campaign at Forêt Montmorency (47°N, 71°W), in southern Québec, Canada, started from early May until late October. The site is characterized by a humid continental climate, with a mean annual precipitation of 1500 mm. The site is located at the boreal forest region, in the balsam for-white birch ecosystem, whose growing season typically extends from May until October. Six measurement plots were established around two micrometeorological towers located in juvenile and sapling forest stands. Five sap flow probes to measure transpiration and a set of rainfall interception instruments (measuring throughfall, free throughfall and stemflow separately) have been deployed on each plot. Initial results presented will include the estimated evapotranspiration rate and soil evaporation measured using eddy covariance method, transpiration rate and high resolution analysis of rainfall interception.

Characterization of Canopy Layering in Forested Ecosystems Using Full Waveform Lidar

NASA Technical Reports Server (NTRS)

Whitehurst, Amanda S.; Swatantran, Anu; Blair, J. Bryan; Hofton, Michelle A.; Dubayah, Ralph

2013-01-01

Canopy structure, the vertical distribution of canopy material, is an important element of forest ecosystem dynamics and habitat preference. Although vertical stratification, or "canopy layering," is a basic characterization of canopy structure for research and forest management, it is difficult to quantify at landscape scales. In this paper we describe canopy structure and develop methodologies to map forest vertical stratification in a mixed temperate forest using full-waveform lidar. Two definitions-one categorical and one continuous-are used to map canopy layering over Hubbard Brook Experimental Forest, New Hampshire with lidar data collected in 2009 by NASA's Laser Vegetation Imaging Sensor (LVIS). The two resulting canopy layering datasets describe variation of canopy layering throughout the forest and show that layering varies with terrain elevation and canopy height. This information should provide increased understanding of vertical structure variability and aid habitat characterization and other forest management activities.

On the use of phloem sap δ13C to estimate canopy carbon discrimination

NASA Astrophysics Data System (ADS)

Rascher, Katherine; Máguas, Cristina; Werner, Christiane

2010-05-01

Although the carbon stable isotope composition (d13C) of bulk leaf material is a good integrative parameter of photosynthetic discrimination and can be used as a reliable ecological index of plant functioning; it is not a good tracer of short-term changes in photosynthetic discrimination. In contrast, d13C of phloem sap is potentially useful as an indicator of short-term changes in canopy photosynthetic discrimination. However, recent research indicates that d13C signatures may be substantially altered by metabolic processes downstream of initial leaf-level carbon fixation (e.g. post-photosynthetic fractionation). Accordingly, before phloem sap d13C can be used as a proxy for canopy level carbon discrimination an understanding of factors influencing the degree and magnitude of post-photosynthetic fractionation and how these vary between species is of paramount importance. In this study, we measured the d13C signature along the basipetal transport pathway in two co-occurring tree species in the field - an understory invasive exotic legume, Acacia longifolia, and a native pine, Pinus pinaster. We measured d13C of bulk leaf and leaf water soluble organic matter (WSOM), phloem sap sampled at two points along the plant axis and leaf and root dark respiration. In general, species differences in photosynthetic discrimination resulted in more enriched d13C values in the water-conserving P. pinaster relative to the water-spending A. longifolia. Post-photosynthetic fractionation led to differences in d13C of carbon pools along the plant axis with progressively more depleted d13C from the canopy to the trunk (~6.5 per mil depletion in A. longifolia and ~0.8per mil depletion in P. pinaster). Leaf and root respiration, d13C, were consistently enriched relative to putative substrates. We hypothesize that the pronounced enrichment of leaf respired CO2 relative to leaf WSOM may have left behind relatively depleted carbon to be loaded into the phloem resulting in d13C depletion along the canopy to trunk continuum. We further hypothesize that pronounced depletion along the basipetal transport pathway in A. longifolia (more than 6 per mil from leaf water soluble organic matter to trunk phloem sap) may be due to high stem photosynthesis rates in this green-barked legume. Regardless of these fractionation effects, phloem sap d13C correlated well with environmental parameters driving photosynthesis (photosynthetic photon flux density, soil moisture, vapor pressure deficit) for both species indicating that phloem sap d13C is a good integrative tracer of changes in canopy-level carbon discrimination once species-specific differences in post-photosynthetic fractionation are accounted for. Furthermore, we illustrate that combining sap flow estimated canopy stomatal conductance (gs) with measurements of phloem sap d13C (adjusted for post-photosynthetic fractionation) has significant potential as a relatively non-intensive method for estimating canopy-level carbon assimilation rates in field studies.

Observations of the scale-dependent turbulence and evaluation of the flux–gradient relationship for sensible heat for a closed Douglas-fir canopy in very weak wind conditions

DOE PAGES

Vickers, D.; Thomas, C. K.

2014-09-16

Observations of the scale-dependent turbulent fluxes, variances, and the bulk transfer parameterization for sensible heat above, within, and beneath a tall closed Douglas-fir canopy in very weak winds are examined. The daytime sub-canopy vertical velocity spectra exhibit a double-peak structure with peaks at timescales of 0.8 s and 51.2 s. A double-peak structure is also observed in the daytime sub-canopy heat flux co-spectra. The daytime momentum flux co-spectra in the upper bole space and in the sub-canopy are characterized by a relatively large cross-wind component, likely due to the extremely light and variable winds, such that the definition of amore » mean wind direction, and subsequent partitioning of the momentum flux into along- and cross-wind components, has little physical meaning. Positive values of both momentum flux components in the sub-canopy contribute to upward transfer of momentum, consistent with the observed sub-canopy secondary wind speed maximum. For the smallest resolved scales in the canopy at nighttime, we find increasing vertical velocity variance with decreasing timescale, consistent with very small eddies possibly generated by wake shedding from the canopy elements that transport momentum, but not heat. Unusually large values of the velocity aspect ratio within the canopy were observed, consistent with enhanced suppression of the horizontal wind components compared to the vertical by the very dense canopy. The flux–gradient approach for sensible heat flux is found to be valid for the sub-canopy and above-canopy layers when considered separately in spite of the very small fluxes on the order of a few W m −2 in the sub-canopy. However, single-source approaches that ignore the canopy fail because they make the heat flux appear to be counter-gradient when in fact it is aligned with the local temperature gradient in both the sub-canopy and above-canopy layers. While sub-canopy Stanton numbers agreed well with values typically reported in the literature, our estimates for the above-canopy Stanton number were much larger, which likely leads to underestimated modeled sensible heat fluxes above dark warm closed canopies.« less

Observations of the scale-dependent turbulence and evaluation of the flux–gradient relationship for sensible heat for a closed Douglas-fir canopy in very weak wind conditions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vickers, D.; Thomas, C. K.

Observations of the scale-dependent turbulent fluxes, variances, and the bulk transfer parameterization for sensible heat above, within, and beneath a tall closed Douglas-fir canopy in very weak winds are examined. The daytime sub-canopy vertical velocity spectra exhibit a double-peak structure with peaks at timescales of 0.8 s and 51.2 s. A double-peak structure is also observed in the daytime sub-canopy heat flux co-spectra. The daytime momentum flux co-spectra in the upper bole space and in the sub-canopy are characterized by a relatively large cross-wind component, likely due to the extremely light and variable winds, such that the definition of amore » mean wind direction, and subsequent partitioning of the momentum flux into along- and cross-wind components, has little physical meaning. Positive values of both momentum flux components in the sub-canopy contribute to upward transfer of momentum, consistent with the observed sub-canopy secondary wind speed maximum. For the smallest resolved scales in the canopy at nighttime, we find increasing vertical velocity variance with decreasing timescale, consistent with very small eddies possibly generated by wake shedding from the canopy elements that transport momentum, but not heat. Unusually large values of the velocity aspect ratio within the canopy were observed, consistent with enhanced suppression of the horizontal wind components compared to the vertical by the very dense canopy. The flux–gradient approach for sensible heat flux is found to be valid for the sub-canopy and above-canopy layers when considered separately in spite of the very small fluxes on the order of a few W m −2 in the sub-canopy. However, single-source approaches that ignore the canopy fail because they make the heat flux appear to be counter-gradient when in fact it is aligned with the local temperature gradient in both the sub-canopy and above-canopy layers. While sub-canopy Stanton numbers agreed well with values typically reported in the literature, our estimates for the above-canopy Stanton number were much larger, which likely leads to underestimated modeled sensible heat fluxes above dark warm closed canopies.« less

Effects of Canopy Wetness on Evapotranspiration in Native and Invaded Tropical Montane Cloud Forest in Hawai‘i

NASA Astrophysics Data System (ADS)

Giambelluca, T. W.; Delay, J. K.; Takahashi, M.; Mudd, R. G.; Huang, M.; Asner, G. P.; Martin, R. E.; Nullet, M. A.

2009-12-01

Canopy wetness has profound effects on ecosystem processes. Canopy-atmosphere gas and energy exchanges are strongly altered when leaves are wetted by rainfall, fog, or dew. In some tropical forests, wet-canopy evaporation contributes a large portion of total evapotranspiration. On the other hand, transpiration is minimized when leaves are wet. The overall hydrological effects of canopy wetting depend on the canopy structure and on the frequency and duration of wetting events. At two field sites in Hawai‘i, one within native Metrosideros polymorpha forest and the other at a site heavily invaded by Psidium cattleianum, we are conducting measurements of canopy water balance, stand-level evapotranspiration (ET), transpiration (using sapflow techniques), energy balance, and related processes. Preliminary canopy water balance results show that wet canopy evaporation is 588 mm/yr (33% of potential ET) at the native site and 376 mm/yr (22% of potential ET) at the invaded site. Based on sapflow measurements in canopy branches, mean transpiration for partially and fully wetted canopy periods (categorized using leaf wetness sensor observations) was 47% and 17% of dry canopy transpiration at the native forest site. For the invaded site, transpiration for partially and fully wetted canopy periods was 67% and 33% of dry canopy transpiration. It appears that the invaded site is able to maintain higher transpiration rates, along with lower wet-canopy evaporation rates, during wet-canopy periods. Previously reported stand level measurements have shown that total ET represents a larger portion of available energy at the invaded site than the native site. These findings suggest that alien plant invasion is shifting evaporative water loss from wet-canopy evaporation to transpiration, while increasing overall water loss. Higher transpiration is likely to be associated with higher rates of carbon exchange, which may contribute to the success of this invasive tree.

VitiCanopy: A Free Computer App to Estimate Canopy Vigor and Porosity for Grapevine

PubMed Central

De Bei, Roberta; Fuentes, Sigfredo; Gilliham, Matthew; Tyerman, Steve; Edwards, Everard; Bianchini, Nicolò; Smith, Jason; Collins, Cassandra

2016-01-01

Leaf area index (LAI) and plant area index (PAI) are common and important biophysical parameters used to estimate agronomical variables such as canopy growth, light interception and water requirements of plants and trees. LAI can be either measured directly using destructive methods or indirectly using dedicated and expensive instrumentation, both of which require a high level of know-how to operate equipment, handle data and interpret results. Recently, a novel smartphone and tablet PC application, VitiCanopy, has been developed by a group of researchers from the University of Adelaide and the University of Melbourne, to estimate grapevine canopy size (LAI and PAI), canopy porosity, canopy cover and clumping index. VitiCanopy uses the front in-built camera and GPS capabilities of smartphones and tablet PCs to automatically implement image analysis algorithms on upward-looking digital images of canopies and calculates relevant canopy architecture parameters. Results from the use of VitiCanopy on grapevines correlated well with traditional methods to measure/estimate LAI and PAI. Like other indirect methods, VitiCanopy does not distinguish between leaf and non-leaf material but it was demonstrated that the non-leaf material could be extracted from the results, if needed, to increase accuracy. VitiCanopy is an accurate, user-friendly and free alternative to current techniques used by scientists and viticultural practitioners to assess the dynamics of LAI, PAI and canopy architecture in vineyards, and has the potential to be adapted for use on other plants. PMID:27120600

VitiCanopy: A Free Computer App to Estimate Canopy Vigor and Porosity for Grapevine.

PubMed

De Bei, Roberta; Fuentes, Sigfredo; Gilliham, Matthew; Tyerman, Steve; Edwards, Everard; Bianchini, Nicolò; Smith, Jason; Collins, Cassandra

2016-04-23

Leaf area index (LAI) and plant area index (PAI) are common and important biophysical parameters used to estimate agronomical variables such as canopy growth, light interception and water requirements of plants and trees. LAI can be either measured directly using destructive methods or indirectly using dedicated and expensive instrumentation, both of which require a high level of know-how to operate equipment, handle data and interpret results. Recently, a novel smartphone and tablet PC application, VitiCanopy, has been developed by a group of researchers from the University of Adelaide and the University of Melbourne, to estimate grapevine canopy size (LAI and PAI), canopy porosity, canopy cover and clumping index. VitiCanopy uses the front in-built camera and GPS capabilities of smartphones and tablet PCs to automatically implement image analysis algorithms on upward-looking digital images of canopies and calculates relevant canopy architecture parameters. Results from the use of VitiCanopy on grapevines correlated well with traditional methods to measure/estimate LAI and PAI. Like other indirect methods, VitiCanopy does not distinguish between leaf and non-leaf material but it was demonstrated that the non-leaf material could be extracted from the results, if needed, to increase accuracy. VitiCanopy is an accurate, user-friendly and free alternative to current techniques used by scientists and viticultural practitioners to assess the dynamics of LAI, PAI and canopy architecture in vineyards, and has the potential to be adapted for use on other plants.

Throughfall patterns of a Subtropical Atlantic Forest in Brazil

NASA Astrophysics Data System (ADS)

Macedo Sá, João Henrique; Borges Chaffe, Pedro Luiz; Yuimi de Oliveira, Debora; Nery Giglio, Joana; Kobiyama, Masato

2017-04-01

The interception process is responsible for the spatial and temporal redistribution of the precipitation that reaches the ground. This process is important especially in forested areas since it influences recycling of moisture from the air and also the amount of water that effectively reaches the ground. The contact of the precipitation with the canopy influences on the water quality, increasing the concentration of various nutrients in the throughfall (Tf) and stemflow (Sf). Brazil, only about 8% of the original Atlantic Forest cover remains. That is an important biome and little is known about the characteristics of rainfall interception of this forest. The total interception loss in forested areas is usually formulated as the gross precipitation (P) minus the sum of the throughfall (Tf) and the stemflow (Sf). The stems characteristics influence on Sf, meanwhile, the value of Tf strongly depends on the canopy and leaf structures. Because of the complex structure of the canopy, these characteristics are usually expressed by the simpler Leaf Area Index (LAI) or the Canopy Cover Fraction (CCF). The Araponga river experimental catchment (ARA) with 5.3 ha is on the northern plateau of Santa Catarina State, southern Brazil. It is an area completely covered by secondary subtropical Atlantic Forest, the regional climate is the Köppen Cfb type, i.e., temperate climate without dry season and with warm summer (the mean temperature of the hottest month is always under 22°C). The objectives of the present study were (i) to evaluate the spatial and temporal variation of canopy cover; (ii) to influence of the interception process on the precipitation quality; and (iii) to explore the relation between canopy cover and throughfall. Inside the catchment, 9 Tf gauges were installed 40 cm above the soil surface in order to include the interception by shrub. 28 hand-made gauges were installed on a circular area of 3 m radius to analyze the spatial variability of throughfall. During 3 year in 2012 to 2014, digital images were taken every month with a camera installed horizontally 25 cm above the soil surface at each Tf gage. The total incident rainfall was 4624 mm, the throughfall volume was 3538 mm or 76% of incident rainfall. CCF and LAI ranged from 70 to 90% and from 3 to 5.5 m2/m2, respectively. We could not find any satisfactory relationship between Tf and canopy parameters (CCF and LAI). The analysis shows the significant difference in the water quality of the precipitation that reaches the ground after being intercepted. There was no significant relationship between the physicochemical parameters and the canopy cover fraction. The results indicate that the distribution of throughfall is not homogeneous, its spatial variation is not linked to any of the calculated parameters.

Using virtual 3-D plant architecture to assess fungal pathogen splash dispersal in heterogeneous canopies: a case study with cultivar mixtures and a non-specialized disease causal agent.

PubMed

Gigot, C; de Vallavieille-Pope, C; Huber, L; Saint-Jean, S

2014-09-01

Recent developments in plant disease management have led to a growing interest in alternative strategies, such as increasing host diversity and decreasing the use of pesticides. Use of cultivar mixtures is one option, allowing the spread of plant epidemics to be slowed down. As dispersal of fungal foliar pathogens over short distances by rain-splash droplets is a major contibutor to the spread of disease, this study focused on modelling the physical mechanisms involved in dispersal of a non-specialized pathogen within heterogeneous canopies of cultivar mixtures, with the aim of optimizing host diversification at the intra-field level. Virtual 3-D wheat-like plants (Triticum aestivum) were used to consider interactions between plant architecture and disease progression in heterogeneous canopies. A combined mechanistic and stochastic model, taking into account splash droplet dispersal and host quantitative resistance within a 3-D heterogeneous canopy, was developed. It consists of four sub-models that describe the spatial patterns of two cultivars within a complex canopy, the pathway of rain-splash droplets within this canopy, the proportion of leaf surface area impacted by dispersal via the droplets and the progression of disease severity after each dispersal event. Different spatial organization, proportions and resistance levels of the cultivars of two-component mixtures were investigated. For the eight spatial patterns tested, the protective effect against disease was found to vary by almost 2-fold, with the greatest effect being obtained with the smallest genotype unit area, i.e. the ground area occupied by an independent unit of the host population that is genetically homogeneous. Increasing both the difference between resistance levels and the proportion of the most resistant cultivar often resulted in a greater protective effect; however, this was not observed for situations in which the most resistant of the two cultivars in the mixture had a relatively low level of resistance. The results show agreement with previous data obtained using experimental approaches. They demonstrate that in order to maximize the potential mixture efficiency against a splash-dispersed pathogen, optimal susceptible/resistant cultivar proportions (ranging from 1/9 to 5/5) have to be established based on host resistance levels. The results also show that taking into account dispersal processes in explicit 3-D plant canopies can be a key tool for investigating disease progression in heterogeneous canopies such as cultivar mixtures. © The Author 2014. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Three-dimensional simulation of gas and dust in Io's Pele plume

NASA Astrophysics Data System (ADS)

McDoniel, William J.; Goldstein, David B.; Varghese, Philip L.; Trafton, Laurence M.

2015-09-01

Io's giant Pele plume rises high above the moon's surface and produces a complex deposition pattern. We use the direct simulation Monte Carlo (DSMC) method to model the flow of SO2 gas and silicate ash from the surface of the lava lake, into the umbrella-shaped canopy of the plume, and eventually onto the surface where the flow leaves black "butterfly wings" surrounded by a large red ring. We show how the geometry of the lava lake, from which the gas is emitted, is responsible for significant asymmetry in the plume and for the shape of the red deposition ring by way of complicated gas-dynamic interactions between parts of the gas flow arising from different areas in the lava lake. We develop a model for gas flow in the immediate vicinity of the lava lake and use it to show that the behavior of ash particles of less than about 2 μm in diameter in the plume is insensitive to the details of how they are introduced into the flow because they are coupled to the gas at low altitudes. We simulate dust particles in the plume to show how particle size determines the distance from the lava lake at which particles deposit on the surface, and we use this dependence to find a size distribution of black dust particles in the plume that provides the best explanation for the observed black fans to the east and west of the lava lake. This best-fit particle size distribution suggests that there may be two distinct mechanisms of black dust creation at Pele, and when two log-normal distributions are fit to our results we obtain a mean particle diameter of 88 nm. We also propose a mechanism by which the condensible plume gas might overlay black dust in areas where black coloration is not observed and compare this to the observed overlaying of Pillanian dust by Pele's red ring.

Changes in vegetation in northern Alaska under scenarios of climate change, 2003-2100: implications for climate feedbacks

Treesearch

E.S. Euskirchen; A.D. McGuire; F.S. III Chapin; S. Yi; C.C. Thompson

2009-01-01

Assessing potential future changes in arctic and boreal plant species productivity, ecosystem composition, and canopy complexity is essential for understanding environmental responses under expected altered climate forcing. We examined potential changes in the dominant plant functional types (PFTs) of the sedge tundra, shrub tundra, and boreal forest ecosystems in...

A Comparison of Simulated and Field-Derived Leaf Area Index (LAI) and Canopy Height Values from Four Forest Complexes in the Southeastern USA

EPA Science Inventory

Vegetative leaf area is a critical input to models that simulate human and ecosystem exposure to atmospheric pollutants. Leaf area index (LAI) can be measured in the field or numerically simulated, but all contain some inherent uncertainty that is passed to the exposure assessmen...

Evaluation of forest snow processes models (SnowMKIP2)

Treesearch

Nick Rutter; Richard Essery; John Pomeroy; Nuria Altimir; Kostas Andreadis; Ian Baker; Alan Barr; Paul Bartlett; Aaron Boone; Huiping Deng; Herve Douville; Emanuel Dutra; Kelly Elder; others

2009-01-01

Thirty-three snowpack models of varying complexity and purpose were evaluated across a wide range of hydrometeorological and forest canopy conditions at five Northern Hemisphere locations, for up to two winter snow seasons. Modeled estimates of snow water equivalent (SWE) or depth were compared to observations at forest and open sites at each location. Precipitation...

Estimation of nocturnal CO2 and N2O soil emissions from changes in surface boundary layer mass storage

NASA Astrophysics Data System (ADS)

Grant, Richard H.; Omonode, Rex A.

2018-04-01

Annual budgets of greenhouse and other trace gases require knowledge of the emissions throughout the year. Unfortunately, emissions into the surface boundary layer during stable, calm nocturnal periods are not measurable using most micrometeorological methods due to non-stationarity and uncoupled flow. However, during nocturnal periods with very light winds, carbon dioxide (CO2) and nitrous oxide (N2O) frequently accumulate near the surface and this mass accumulation can be used to determine emissions. Gas concentrations were measured at four heights (one within and three above canopy) and turbulence was measured at three heights above a mature 2.5 m maize canopy from 23 July to 10 September 2015. Nocturnal CO2 and N2O fluxes from the canopy were determined using the accumulation of mass within a 6.3 m control volume and out the top of the control volume within the nocturnal surface boundary layer. Diffusive fluxes were estimated by flux gradient method. The total accumulative and diffusive fluxes during near-calm nights (friction velocities < 0.05 ms-1) averaged 1.16 µmol m-2 s-1 CO2 and 0.53 nmol m-2 s-1 N2O. Fluxes were also measured using chambers. Daily mean CO2 fluxes determined by the accumulation method were 90 to 130 % of those determined using soil chambers. Daily mean N2O fluxes determined by the accumulation method were 60 to 80 % of that determined using soil chambers. The better signal-to-noise ratios of the chamber method for CO2 over N2O, non-stationary flow, assumed Schmidt numbers, and anemometer tilt were likely contributing reasons for the differences in chambers versus accumulated nocturnal mass flux estimates. Near-surface N2O accumulative flux measurements in more homogeneous regions and with greater depth are needed to confirm the conclusion that mass accumulation can be effectively used to estimate soil emissions during nearly calm nights.

Optimization of canopy conductance models from concurrent measurements of sap flow and stem water potential on Drooping Sheoak in South Australia

NASA Astrophysics Data System (ADS)

Wang, H.; Guan, H.; Deng, R.; Simmons, C. T.

2013-12-01

Canopy conductance response to environmental conditions is a critical component in land surface hydrological modeling. This response is often formulated as a combination of response functions of each influencing factor (solar radiation, air temperature, vapor pressure deficit, and soil water availability). These functions are climate and vegetation specific. Thus, it is important to determine the most appropriate combination of response functions and their parameter values for a specific environment. We will present a method for this purpose based on field measurements and an optimization scheme. The study was performed on Drooping Sheoak (Allocasuarina verticillata) in Adelaide South Australia. Sap flow and stem water potential were measured in a year together with microclimate variables. Canopy conductance was calculated from the inversed Penman-Monteith (PM) equation, which was then used to examine the performance of 36 combinations of various response functions. Parameters in the models were optimized using a DiffeRential Evolution Adaptive Metropolis (DREAM) model based on a training dataset. The testing results show that the best combination gave a correlation coefficient of 0.97, and root mean square error of 0.0006 m/s in comparison to the PM-calculated values. The maximum stomatal conductance given by this combination is 0.0075 m/s, equivalent to a minimum stomatal resistance of 133 s/m. This is close to the number (150 s/m) used in Noah land surface model for evergreen needle-leaf trees. It is surprising that for all combinations, the optimized parameter of the temperature response function is against its physical meaning. This is likely related to the inter-dependence between air temperature and vapor pressure deficit. Supported by the results, we suggest that the effects of vapor pressure deficit and air temperature should be represented together, so as to be consistent with the physics.

Landscape-scale changes in forest canopy structure across a partially logged tropical peat swamp

NASA Astrophysics Data System (ADS)

Wedeux, B. M. M.; Coomes, D. A.

2015-07-01

Forest canopy structure is strongly influenced by environmental factors and disturbance, and in turn influences key ecosystem processes including productivity, evapotranspiration and habitat availability. In tropical forests increasingly modified by human activities, the interplaying effects of environmental factors and disturbance legacies on forest canopy structure across landscapes are practically unexplored. We used high-fidelity airborne laser scanning (ALS) data to measure the canopy of old-growth and selectively logged peat swamp forest across a peat dome in Central Kalimantan, Indonesia, and quantified how canopy structure metrics varied with peat depth and under logging. Several million canopy gaps in different height cross-sections of the canopy were measured in 100 plots of 1 km2 spanning the peat dome, allowing us to describe canopy structure with seven metrics. Old-growth forest became shorter and had simpler vertical canopy profiles on deeper peat, consistently with previous work linking deep peat to stunted tree growth. Gap Size Frequency Distributions (GSFDs) indicated fewer and smaller canopy gaps on the deeper peat (i.e. the scaling exponent of pareto functions increased from 1.76 to 3.76 with peat depth). Areas subjected to concessionary logging until 2000, and informal logging since then, had the same canopy top height as old-growth forest, indicating the persistence of some large trees, but mean canopy height was significantly reduced; the total area of canopy gaps increased and the GSFD scaling exponent was reduced. Logging effects were most evident on the deepest peat, where nutrient depletion and waterlogged conditions restrain tree growth and recovery. A tight relationship exists between canopy structure and the peat deph gradient within the old-growth tropical peat swamp. This relationship breaks down after selective logging, with canopy structural recovery being modulated by environmental conditions.

Strategic guidelines for street canyon geometry to achieve sustainable street air quality

NASA Astrophysics Data System (ADS)

Chan, Andy T.; So, Ellen S. P.; Samad, Subash C.

This paper is concerned with the motion of air within the urban street canyon and is directed towards a deeper understanding of pollutant dispersion with respect to various simple canyon geometries and source positions. Taking into account the present days typical urban configurations, three principal flow regimes "isolated roughness flow", "skimming flow" and "wake interference flow" (Boundary Layer Climates, 2nd edition, Methuen, London) and their corresponding pollutant dispersion characteristics are studied for various canopies aspect ratios, namely relative height ( h2/ h1), canyon height to width ratio ( h/ w) and canyon length to height ratio ( l/ h). A field-size canyon has been analyzed through numerical simulations using the standard k- ɛ turbulence closure model. It is found that the pollutant transport and diffusion is strongly dependent upon the type of flow regime inside the canyon and exchange between canyon and the above roof air. Some rules of thumbs have been established to get urban canyon geometries for efficient dispersion of pollutants.

Upscaling of Solar Induced Chlorophyll Fluorescence from Leaf to Canopy Using the Dart Model and a Realistic 3d Forest Scene

NASA Astrophysics Data System (ADS)

Liu, W.; Atherton, J.; Mõttus, M.; MacArthur, A.; Teemu, H.; Maseyk, K.; Robinson, I.; Honkavaara, E.; Porcar-Castell, A.

2017-10-01

Solar induced chlorophyll a fluorescence (SIF) has been shown to be an excellent proxy of photosynthesis at multiple scales. However, the mechanical linkages between fluorescence and photosynthesis at the leaf level cannot be directly applied at canopy or field scales, as the larger scale SIF emission depends on canopy structure. This is especially true for the forest canopies characterized by high horizontal and vertical heterogeneity. While most of the current studies on SIF radiative transfer in plant canopies are based on the assumption of a homogeneous canopy, recently codes have been developed capable of simulation of fluorescence signal in explicit 3-D forest canopies. Here we present a canopy SIF upscaling method consisting of the integration of the 3-D radiative transfer model DART and a 3-D object model BLENDER. Our aim was to better understand the effect of boreal forest canopy structure on SIF for a spatially explicit forest canopy.

Land-based crop phenotyping by image analysis: Accurate estimation of canopy height distributions using stereo images.

PubMed

Cai, Jinhai; Kumar, Pankaj; Chopin, Joshua; Miklavcic, Stanley J

2018-01-01

In this paper we report on an automated procedure to capture and characterize the detailed structure of a crop canopy by means of stereo imaging. We focus attention specifically on the detailed characteristic of canopy height distribution-canopy shoot area as a function of height-which can provide an elaborate picture of canopy growth and health under a given set of conditions. We apply the method to a wheat field trial involving ten Australian wheat varieties that were subjected to two different fertilizer treatments. A novel camera self-calibration approach is proposed which allows the determination of quantitative plant canopy height data (as well as other valuable phenotypic information) by stereo matching. Utilizing the canopy height distribution to provide a measure of canopy height, the results compare favourably with manual measurements of canopy height (resulting in an R2 value of 0.92), and are indeed shown to be more consistent. By comparing canopy height distributions of different varieties and different treatments, the methodology shows that different varieties subjected to the same treatment, and the same variety subjected to different treatments can respond in much more distinctive and quantifiable ways within their respective canopies than can be captured by a simple trait measure such as overall canopy height.

Interactions between Canopy Structure and Herbaceous Biomass along Environmental Gradients in Moist Forest and Dry Miombo Woodland of Tanzania.

PubMed

Shirima, Deo D; Pfeifer, Marion; Platts, Philip J; Totland, Ørjan; Moe, Stein R

2015-01-01

We have limited understanding of how tropical canopy foliage varies along environmental gradients, and how this may in turn affect forest processes and functions. Here, we analyse the relationships between canopy leaf area index (LAI) and above ground herbaceous biomass (AGBH) along environmental gradients in a moist forest and miombo woodland in Tanzania. We recorded canopy structure and herbaceous biomass in 100 permanent vegetation plots (20 m × 40 m), stratified by elevation. We quantified tree species richness, evenness, Shannon diversity and predominant height as measures of structural variability, and disturbance (tree stumps), soil nutrients and elevation as indicators of environmental variability. Moist forest and miombo woodland differed substantially with respect to nearly all variables tested. Both structural and environmental variables were found to affect LAI and AGBH, the latter being additionally dependent on LAI in moist forest but not in miombo, where other factors are limiting. Combining structural and environmental predictors yielded the most powerful models. In moist forest, they explained 76% and 25% of deviance in LAI and AGBH, respectively. In miombo woodland, they explained 82% and 45% of deviance in LAI and AGBH. In moist forest, LAI increased non-linearly with predominant height and linearly with tree richness, and decreased with soil nitrogen except under high disturbance. Miombo woodland LAI increased linearly with stem density, soil phosphorous and nitrogen, and decreased linearly with tree species evenness. AGBH in moist forest decreased with LAI at lower elevations whilst increasing slightly at higher elevations. AGBH in miombo woodland increased linearly with soil nitrogen and soil pH. Overall, moist forest plots had denser canopies and lower AGBH compared with miombo plots. Further field studies are encouraged, to disentangle the direct influence of LAI on AGBH from complex interrelationships between stand structure, environmental gradients and disturbance in African forests and woodlands.

Remote canopy hemispherical image collection system

NASA Astrophysics Data System (ADS)

Wan, Xuefen; Liu, Bingyu; Yang, Yi; Han, Fang; Cui, Jian

2016-11-01

Canopies are major part of plant photosynthesis and have distinct architectural elements such as tree crowns, whorls, branches, shoots, etc. By measuring canopy structural parameters, the solar radiation interception, photosynthesis effects and the spatio-temporal distribution of solar radiation under the canopy can be evaluated. Among canopy structure parameters, Leaf Area Index (LAI) is the key one. Leaf area index is a crucial variable in agronomic and environmental studies, because of its importance for estimating the amount of radiation intercepted by the canopy and the crop water requirements. The LAI can be achieved by hemispheric images which are obtained below the canopy with high accuracy and effectiveness. But existing hemispheric images canopy-LAI measurement technique is based on digital SLR camera with a fisheye lens. Users need to collect hemispheric image manually. The SLR camera with fisheye lens is not suit for long-term canopy-LAI outdoor measurement too. And the high cost of SLR limits its capacity. In recent years, with the development of embedded system and image processing technology, low cost remote canopy hemispheric image acquisition technology is becoming possible. In this paper, we present a remote hemispheric canopy image acquisition system with in-field/host configuration. In-field node based on imbed platform, low cost image sensor and fisheye lens is designed to achieve hemispherical image of plant canopy at distance with low cost. Solar radiation and temperature/humidity data, which are important for evaluating image data validation, are obtained for invalid hemispherical image elimination and node maintenance too. Host computer interacts with in-field node by 3G network. The hemispherical image calibration and super resolution are used to improve image quality in host computer. Results show that the remote canopy image collection system can make low cost remote canopy image acquisition for LAI effectively. It will be a potential technology candidate for low-cost remote canopy hemispherical image collection to measure canopy LAI.

Plant canopy gap-size analysis theory for improving optical measurements of leaf-area index

NASA Astrophysics Data System (ADS)

Chen, Jing M.; Cihlar, Josef

1995-09-01

Optical instruments currently available for measuring the leaf-area index (LAI) of a plant canopy all utilize only the canopy gap-fraction information. These instruments include the Li-Cor LAI-2000 Plant Canopy Analyzer, Decagon, and Demon. The advantages of utilizing both the canopy gap-fraction and gap-size information are shown. For the purpose of measuring the canopy gap size, a prototype sunfleck-LAI instrument named Tracing Radiation and Architecture of Canopies (TRAC), has been developed and tested in two pure conifer plantations, red pine (Pinus resinosa Ait.) and jack pine (Pinus banksiana Lamb). A new gap-size-analysis theory is presented to quantify the effect of canopy architecture on optical measurements of LAI based on the gap-fraction principle. The theory is an improvement on that of Lang and Xiang [Agric. For. Meteorol. 37, 229 (1986)]. In principle, this theory can be used for any heterogeneous canopies.

Effect of Stability on Mixing in Open Canopies. Chapter 4

NASA Technical Reports Server (NTRS)

Lee, Young-Hee; Mahrt, L.

2005-01-01

In open canopies, the within-canopy flux from the ground surface and understory can account for a significant fraction of the total flux above the canopy. This study incorporates the important influence of within-canopy stability on turbulent mixing and subcanopy fluxes into a first-order closure scheme. Toward this goal, we analyze within-canopy eddy-correlation data from the old aspen site in the Boreal Ecosystem - Atmosphere Study (BOREAS) and a mature ponderosa pine site in Central Oregon, USA. A formulation of within-canopy transport is framed in terms of a stability- dependent mixing length, which approaches Monin-Obukhov similarity theory above the canopy roughness sublayer. The new simple formulation is an improvement upon the usual neglect of the influence of within-canopy stability in simple models. However, frequent well-defined cold air drainage within the pine subcanopy inversion reduces the utility of simple models for nocturnal transport. Other shortcomings of the formulation are discussed.

Effects of vegetation canopy structure on remotely sensed canopy temperatures. [inferring plant water stress and yield

NASA Technical Reports Server (NTRS)

Kimes, D. S.

1979-01-01

The effects of vegetation canopy structure on thermal infrared sensor response must be understood before vegetation surface temperatures of canopies with low percent ground cover can be accurately inferred. The response of a sensor is a function of vegetation geometric structure, the vertical surface temperature distribution of the canopy components, and sensor view angle. Large deviations between the nadir sensor effective radiant temperature (ERT) and vegetation ERT for a soybean canopy were observed throughout the growing season. The nadir sensor ERT of a soybean canopy with 35 percent ground cover deviated from the vegetation ERT by as much as 11 C during the mid-day. These deviations were quantitatively explained as a function of canopy structure and soil temperature. Remote sensing techniques which determine the vegetation canopy temperature(s) from the sensor response need to be studied.

A New Canopy Integration Factor

NASA Astrophysics Data System (ADS)

Badgley, G.; Anderegg, L. D. L.; Baker, I. T.; Berry, J. A.

2017-12-01

Ecosystem modelers have long debated how to best represent within-canopy heterogeneity. Can one big leaf represent the full range of canopy physiological responses? Or you need two leaves - sun and shade - to get things right? Is it sufficient to treat the canopy as a diffuse medium? Or would it be better to explicitly represent separate canopy layers? These are open questions that have been subject of an enormous amount of research and scrutiny. Yet regardless of how the canopy is represented, each model must grapple with correctly parameterizing its canopy in a way that properly translates leaf-level processes to the canopy and ecosystem scale. We present a new approach for integrating whole-canopy biochemistry by combining remote sensing with ecological theory. Using the Simple Biosphere model (SiB), we redefined how SiB scales photosynthetic processes from leaf-to-canopy as a function of satellite-derived measurements of solar-induced chlorophyll fluorescence (SIF). Across multiple long-term study sites, our approach improves the accuracy of daily modeled photosynthesis by as much as 25 percent. We share additional insights on how SIF might be more directly integrated into photosynthesis models, as well as present ideas for harnessing SIF to more accurately parameterize canopy biochemical variables.

What is the most prominent factor limiting photosynthesis in different layers of a greenhouse cucumber canopy?

PubMed Central

Chen, Tsu-Wei; Henke, Michael; de Visser, Pieter H. B.; Buck-Sorlin, Gerhard; Wiechers, Dirk; Kahlen, Katrin; Stützel, Hartmut

2014-01-01

Background and Aims Maximizing photosynthesis at the canopy level is important for enhancing crop yield, and this requires insights into the limiting factors of photosynthesis. Using greenhouse cucumber (Cucumis sativus) as an example, this study provides a novel approach to quantify different components of photosynthetic limitations at the leaf level and to upscale these limitations to different canopy layers and the whole plant. Methods A static virtual three-dimensional canopy structure was constructed using digitized plant data in GroIMP. Light interception of the leaves was simulated by a ray-tracer and used to compute leaf photosynthesis. Different components of photosynthetic limitations, namely stomatal (SL), mesophyll (ML), biochemical (BL) and light (LL) limitations, were calculated by a quantitative limitation analysis of photosynthesis under different light regimes. Key Results In the virtual cucumber canopy, BL and LL were the most prominent factors limiting whole-plant photosynthesis. Diffusional limitations (SL + ML) contributed <15 % to total limitation. Photosynthesis in the lower canopy was more limited by the biochemical capacity, and the upper canopy was more sensitive to light than other canopy parts. Although leaves in the upper canopy received more light, their photosynthesis was more light restricted than in the leaves of the lower canopy, especially when the light condition above the canopy was poor. An increase in whole-plant photosynthesis under diffuse light did not result from an improvement of light use efficiency but from an increase in light interception. Diffuse light increased the photosynthesis of leaves that were directly shaded by other leaves in the canopy by up to 55 %. Conclusions Based on the results, maintaining biochemical capacity of the middle–lower canopy and increasing the leaf area of the upper canopy would be promising strategies to improve canopy photosynthesis in a high-wire cucumber cropping system. Further analyses using the approach described in this study can be expected to provide insights into the influences of horticultural practices on canopy photosynthesis and the design of optimal crop canopies. PMID:24907313

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maurer, K. D.; Bohrer, G.; Kenny, W. T.

Surface roughness parameters, namely the roughness length and displacement height, are an integral input used to model surface fluxes. However, most models assume these parameters to be a fixed property of plant functional type and disregard the governing structural heterogeneity and dynamics. In this study, we use large-eddy simulations to explore, in silico, the effects of canopy-structure characteristics on surface roughness parameters. We performed a virtual experiment to test the sensitivity of resolved surface roughness to four axes of canopy structure: (1) leaf area index, (2) the vertical profile of leaf density, (3) canopy height, and (4) canopy gap fraction.more » We found roughness parameters to be highly variable, but uncovered positive relationships between displacement height and maximum canopy height, aerodynamic canopy height and maximum canopy height and leaf area index, and eddy-penetration depth and gap fraction. We also found negative relationships between aerodynamic canopy height and gap fraction, as well as between eddy-penetration depth and maximum canopy height and leaf area index. We generalized our model results into a virtual "biometric" parameterization that relates roughness length and displacement height to canopy height, leaf area index, and gap fraction. Using a decade of wind and canopy-structure observations in a site in Michigan, we tested the effectiveness of our model-driven biometric parameterization approach in predicting the friction velocity over heterogeneous and disturbed canopies. We compared the accuracy of these predictions with the friction-velocity predictions obtained from the common simple approximation related to canopy height, the values calculated with large-eddy simulations of the explicit canopy structure as measured by airborne and ground-based lidar, two other parameterization approaches that utilize varying canopy-structure inputs, and the annual and decadal means of the surface roughness parameters at the site from meteorological observations. We found that the classical representation of constant roughness parameters (in space and time) as a fraction of canopy height performed relatively well. Nonetheless, of the approaches we tested, most of the empirical approaches that incorporate seasonal and interannual variation of roughness length and displacement height as a function of the dynamics of canopy structure produced more precise and less biased estimates for friction velocity than models with temporally invariable parameters.« less

What is the most prominent factor limiting photosynthesis in different layers of a greenhouse cucumber canopy?

PubMed

Chen, Tsu-Wei; Henke, Michael; de Visser, Pieter H B; Buck-Sorlin, Gerhard; Wiechers, Dirk; Kahlen, Katrin; Stützel, Hartmut

2014-09-01

Maximizing photosynthesis at the canopy level is important for enhancing crop yield, and this requires insights into the limiting factors of photosynthesis. Using greenhouse cucumber (Cucumis sativus) as an example, this study provides a novel approach to quantify different components of photosynthetic limitations at the leaf level and to upscale these limitations to different canopy layers and the whole plant. A static virtual three-dimensional canopy structure was constructed using digitized plant data in GroIMP. Light interception of the leaves was simulated by a ray-tracer and used to compute leaf photosynthesis. Different components of photosynthetic limitations, namely stomatal (S(L)), mesophyll (M(L)), biochemical (B(L)) and light (L(L)) limitations, were calculated by a quantitative limitation analysis of photosynthesis under different light regimes. In the virtual cucumber canopy, B(L) and L(L) were the most prominent factors limiting whole-plant photosynthesis. Diffusional limitations (S(L) + M(L)) contributed <15% to total limitation. Photosynthesis in the lower canopy was more limited by the biochemical capacity, and the upper canopy was more sensitive to light than other canopy parts. Although leaves in the upper canopy received more light, their photosynthesis was more light restricted than in the leaves of the lower canopy, especially when the light condition above the canopy was poor. An increase in whole-plant photosynthesis under diffuse light did not result from an improvement of light use efficiency but from an increase in light interception. Diffuse light increased the photosynthesis of leaves that were directly shaded by other leaves in the canopy by up to 55%. Based on the results, maintaining biochemical capacity of the middle-lower canopy and increasing the leaf area of the upper canopy would be promising strategies to improve canopy photosynthesis in a high-wire cucumber cropping system. Further analyses using the approach described in this study can be expected to provide insights into the influences of horticultural practices on canopy photosynthesis and the design of optimal crop canopies.

Lidar Altimeter Measurements of Canopy Structure: Methods and Validation for Closed Canopy, Broadleaf Forests

NASA Technical Reports Server (NTRS)

Harding, D. J.; Lefsky, M. A.; Parker, G. G.; Blair, J. B.

1999-01-01

Lidar altimeter observations of vegetated landscapes provide a time-resolved measure of laser pulse backscatter energy from canopy surfaces and the underlying ground. Airborne lidar altimeter data was acquired using the Scanning Lidar Imager of Canopies by Echo Recovery (SLICER) for a successional sequence of four, closed-canopy, deciduous forest stands in eastern Maryland. The four stands were selected so as to include a range of canopy structures of importance to forest ecosystem function, including variation in the height and roughness of the outer-most canopy surface and the vertical organization of canopy stories and gaps. The character of the SLICER backscatter signal is described and a method is developed that accounts for occlusion of the laser energy by canopy surfaces, transforming the backscatter signal to a canopy height profile (CHP) that quantitatively represents the relative vertical distribution of canopy surface area. The transformation applies an increased weighting to the backscatter amplitude as a function of closure through the canopy and assumes a horizontally random distribution of the canopy components. SLICER CHPs, averaged over areas of overlap where lidar ground tracks intersect, are shown to be highly reproducible. CHP transects across the four stands reveal spatial variations in vegetation, at the scale of the individual 10 m diameter laser footprints, within and between stands. Averaged SLICER CHPs are compared to analogous height profile results derived from ground-based sightings to plant intercepts measured on plots within the four stands. Tbe plots were located on the segments of the lidar ground tracks from which averaged SLICER CHPs were derived, and the ground observations were acquired within two weeks of the SLICER data acquisition to minimize temporal change. The differences in canopy structure between the four stands is similarly described by the SLICER and ground-based CHP results, however a Chi-square test of similarity documents differences that are statistically significant. The differences are discussed in terms of measurement properties that define the smoothness of the resulting CHPs and Lidar Altimeter Measurements of Canopy Structure - Harding et al. canopy properties that may vertically bias the CHP representations of canopy structure. The statistical differences are most likely due to the more noisy character of the ground-based CHPs, especially high in the canopy where ground-based sightings are rare resulting in an underestimate of canopy surface area and height, and to departures from the assumption of horizontal randomness which bias the CHPs toward the observer (upward for SLICER and downward for ground-based CHPs). The results demonstrate that the SLICER observations reliably provide a measure of canopy structure that reveals ecologically interesting structural variations such as those characterizing a successional sequence of closed-canopy, broadleaf forest stands.

Past Human Disturbance Effects upon Biodiversity are Greatest in the Canopy; A Case Study on Rainforest Butterflies.

PubMed

Whitworth, Andrew; Villacampa, Jaime; Brown, Alice; Huarcaya, Ruthmery Pillco; Downie, Roger; MacLeod, Ross

2016-01-01

A key part of tropical forest spatial complexity is the vertical stratification of biodiversity, with widely differing communities found in higher rainforest strata compared to terrestrial levels. Despite this, our understanding of how human disturbance may differentially affect biodiversity across vertical strata of tropical forests has been slow to develop. For the first time, how the patterns of current biodiversity vary between three vertical strata within a single forest, subject to three different types of historic anthropogenic disturbance, was directly assessed. In total, 229 species of butterfly were detected, with a total of 5219 individual records. Butterfly species richness, species diversity, abundance and community evenness differed markedly between vertical strata. We show for the first time, for any group of rainforest biodiversity, that different vertical strata within the same rainforest, responded differently in areas with different historic human disturbance. Differences were most notable within the canopy. Regenerating forest following complete clearance had 47% lower canopy species richness than regenerating forest that was once selectively logged, while the reduction in the mid-storey was 33% and at ground level, 30%. These results also show for the first time that even long term regeneration (over the course of 30 years) may be insufficient to erase differences in biodiversity linked to different types of human disturbance. We argue, along with other studies, that ignoring the potential for more pronounced effects of disturbance on canopy fauna, could lead to the underestimation of the effects of habitat disturbance on biodiversity, and thus the overestimation of the conservation value of regenerating forests more generally.

Past Human Disturbance Effects upon Biodiversity are Greatest in the Canopy; A Case Study on Rainforest Butterflies

PubMed Central

Whitworth, Andrew; Villacampa, Jaime; Brown, Alice; Huarcaya, Ruthmery Pillco; Downie, Roger; MacLeod, Ross

2016-01-01

A key part of tropical forest spatial complexity is the vertical stratification of biodiversity, with widely differing communities found in higher rainforest strata compared to terrestrial levels. Despite this, our understanding of how human disturbance may differentially affect biodiversity across vertical strata of tropical forests has been slow to develop. For the first time, how the patterns of current biodiversity vary between three vertical strata within a single forest, subject to three different types of historic anthropogenic disturbance, was directly assessed. In total, 229 species of butterfly were detected, with a total of 5219 individual records. Butterfly species richness, species diversity, abundance and community evenness differed markedly between vertical strata. We show for the first time, for any group of rainforest biodiversity, that different vertical strata within the same rainforest, responded differently in areas with different historic human disturbance. Differences were most notable within the canopy. Regenerating forest following complete clearance had 47% lower canopy species richness than regenerating forest that was once selectively logged, while the reduction in the mid-storey was 33% and at ground level, 30%. These results also show for the first time that even long term regeneration (over the course of 30 years) may be insufficient to erase differences in biodiversity linked to different types of human disturbance. We argue, along with other studies, that ignoring the potential for more pronounced effects of disturbance on canopy fauna, could lead to the underestimation of the effects of habitat disturbance on biodiversity, and thus the overestimation of the conservation value of regenerating forests more generally. PMID:26950438

Forest Canopy Cover and Height from MISR in Topographically Complex Southwestern US Landscape Assessed with High Quality Reference Data

NASA Technical Reports Server (NTRS)

Chopping, Mark; North, Malcolm; Chen, Jiquan; Schaaf, Crystal B.; Blair, J. Bryan; Martonchik, John V.; Bull, Michael A.

2012-01-01

This study addresses the retrieval of spatially contiguous canopy cover and height estimates in southwestern USforests via inversion of a geometric-optical (GO) model against surface bidirectional reflectance factor (BRF) estimates from the Multi-angle Imaging SpectroRadiometer (MISR). Model inversion can provide such maps if good estimates of the background bidirectional reflectance distribution function (BRDF) are available. The study area is in the Sierra National Forest in the Sierra Nevada of California. Tree number density, mean crown radius, and fractional cover reference estimates were obtained via analysis of QuickBird 0.6 m spatial resolution panchromatic imagery usingthe CANopy Analysis with Panchromatic Imagery (CANAPI) algorithm, while RH50, RH75 and RH100 (50, 75, and 100 energy return) height data were obtained from the NASA Laser Vegetation Imaging Sensor (LVIS), a full waveform light detection and ranging (lidar) instrument. These canopy parameters were used to drive a modified version of the simple GO model (SGM), accurately reproducing patterns ofMISR 672 nm band surface reflectance (mean RMSE 0.011, mean R2 0.82, N 1048). Cover and height maps were obtained through model inversion against MISR 672 nm reflectance estimates on a 250 m grid.The free parameters were tree number density and mean crown radius. RMSE values with respect to reference data for the cover and height retrievals were 0.05 and 6.65 m, respectively, with of 0.54 and 0.49. MISR can thus provide maps of forest cover and height in areas of topographic variation although refinements are required to improve retrieval precision.

Quantitative Analysis of Cotton Canopy Size in Field Conditions Using a Consumer-Grade RGB-D Camera.

PubMed

Jiang, Yu; Li, Changying; Paterson, Andrew H; Sun, Shangpeng; Xu, Rui; Robertson, Jon

2017-01-01

Plant canopy structure can strongly affect crop functions such as yield and stress tolerance, and canopy size is an important aspect of canopy structure. Manual assessment of canopy size is laborious and imprecise, and cannot measure multi-dimensional traits such as projected leaf area and canopy volume. Field-based high throughput phenotyping systems with imaging capabilities can rapidly acquire data about plants in field conditions, making it possible to quantify and monitor plant canopy development. The goal of this study was to develop a 3D imaging approach to quantitatively analyze cotton canopy development in field conditions. A cotton field was planted with 128 plots, including four genotypes of 32 plots each. The field was scanned by GPhenoVision (a customized field-based high throughput phenotyping system) to acquire color and depth images with GPS information in 2016 covering two growth stages: canopy development, and flowering and boll development. A data processing pipeline was developed, consisting of three steps: plot point cloud reconstruction, plant canopy segmentation, and trait extraction. Plot point clouds were reconstructed using color and depth images with GPS information. In colorized point clouds, vegetation was segmented from the background using an excess-green (ExG) color filter, and cotton canopies were further separated from weeds based on height, size, and position information. Static morphological traits were extracted on each day, including univariate traits (maximum and mean canopy height and width, projected canopy area, and concave and convex volumes) and a multivariate trait (cumulative height profile). Growth rates were calculated for univariate static traits, quantifying canopy growth and development. Linear regressions were performed between the traits and fiber yield to identify the best traits and measurement time for yield prediction. The results showed that fiber yield was correlated with static traits after the canopy development stage ( R 2 = 0.35-0.71) and growth rates in early canopy development stages ( R 2 = 0.29-0.52). Multi-dimensional traits (e.g., projected canopy area and volume) outperformed one-dimensional traits, and the multivariate trait (cumulative height profile) outperformed univariate traits. The proposed approach would be useful for identification of quantitative trait loci (QTLs) controlling canopy size in genetics/genomics studies or for fiber yield prediction in breeding programs and production environments.

Large-eddy simulations of surface roughness parameter sensitivity to canopy-structure characteristics

DOE PAGES

Maurer, K. D.; Bohrer, G.; Kenny, W. T.; ...

2015-04-30

Surface roughness parameters, namely the roughness length and displacement height, are an integral input used to model surface fluxes. However, most models assume these parameters to be a fixed property of plant functional type and disregard the governing structural heterogeneity and dynamics. In this study, we use large-eddy simulations to explore, in silico, the effects of canopy-structure characteristics on surface roughness parameters. We performed a virtual experiment to test the sensitivity of resolved surface roughness to four axes of canopy structure: (1) leaf area index, (2) the vertical profile of leaf density, (3) canopy height, and (4) canopy gap fraction.more » We found roughness parameters to be highly variable, but uncovered positive relationships between displacement height and maximum canopy height, aerodynamic canopy height and maximum canopy height and leaf area index, and eddy-penetration depth and gap fraction. We also found negative relationships between aerodynamic canopy height and gap fraction, as well as between eddy-penetration depth and maximum canopy height and leaf area index. We generalized our model results into a virtual "biometric" parameterization that relates roughness length and displacement height to canopy height, leaf area index, and gap fraction. Using a decade of wind and canopy-structure observations in a site in Michigan, we tested the effectiveness of our model-driven biometric parameterization approach in predicting the friction velocity over heterogeneous and disturbed canopies. We compared the accuracy of these predictions with the friction-velocity predictions obtained from the common simple approximation related to canopy height, the values calculated with large-eddy simulations of the explicit canopy structure as measured by airborne and ground-based lidar, two other parameterization approaches that utilize varying canopy-structure inputs, and the annual and decadal means of the surface roughness parameters at the site from meteorological observations. We found that the classical representation of constant roughness parameters (in space and time) as a fraction of canopy height performed relatively well. Nonetheless, of the approaches we tested, most of the empirical approaches that incorporate seasonal and interannual variation of roughness length and displacement height as a function of the dynamics of canopy structure produced more precise and less biased estimates for friction velocity than models with temporally invariable parameters.« less

Large-eddy simulations of surface roughness parameter sensitivity to canopy-structure characteristics

NASA Astrophysics Data System (ADS)

Maurer, K. D.; Bohrer, G.; Kenny, W. T.; Ivanov, V. Y.

2015-04-01

Surface roughness parameters, namely the roughness length and displacement height, are an integral input used to model surface fluxes. However, most models assume these parameters to be a fixed property of plant functional type and disregard the governing structural heterogeneity and dynamics. In this study, we use large-eddy simulations to explore, in silico, the effects of canopy-structure characteristics on surface roughness parameters. We performed a virtual experiment to test the sensitivity of resolved surface roughness to four axes of canopy structure: (1) leaf area index, (2) the vertical profile of leaf density, (3) canopy height, and (4) canopy gap fraction. We found roughness parameters to be highly variable, but uncovered positive relationships between displacement height and maximum canopy height, aerodynamic canopy height and maximum canopy height and leaf area index, and eddy-penetration depth and gap fraction. We also found negative relationships between aerodynamic canopy height and gap fraction, as well as between eddy-penetration depth and maximum canopy height and leaf area index. We generalized our model results into a virtual "biometric" parameterization that relates roughness length and displacement height to canopy height, leaf area index, and gap fraction. Using a decade of wind and canopy-structure observations in a site in Michigan, we tested the effectiveness of our model-driven biometric parameterization approach in predicting the friction velocity over heterogeneous and disturbed canopies. We compared the accuracy of these predictions with the friction-velocity predictions obtained from the common simple approximation related to canopy height, the values calculated with large-eddy simulations of the explicit canopy structure as measured by airborne and ground-based lidar, two other parameterization approaches that utilize varying canopy-structure inputs, and the annual and decadal means of the surface roughness parameters at the site from meteorological observations. We found that the classical representation of constant roughness parameters (in space and time) as a fraction of canopy height performed relatively well. Nonetheless, of the approaches we tested, most of the empirical approaches that incorporate seasonal and interannual variation of roughness length and displacement height as a function of the dynamics of canopy structure produced more precise and less biased estimates for friction velocity than models with temporally invariable parameters.

Bioengineer effects on understory species richness, diversity, and composition change along an environmental stress gradient: Experimental and mensurative evidence

NASA Astrophysics Data System (ADS)

Watt, Cortney A.; Scrosati, Ricardo A.

2013-05-01

Canopy-forming bioengineer species are commonly assumed to increase local species richness and diversity. We tested this notion by investigating the effects of fucoid seaweed canopies on understory communities along rocky intertidal elevation gradients in Atlantic Canada. Such gradients exhibit increasing thermal extremes and variation from low to high elevations, and are broadly used in stress gradient studies. A manipulative experiment created canopy and no-canopy treatments at the low, middle, and high intertidal zones, eliminating all species (except fucoid canopies) from replicate quadrats. After recolonization, overall richness and diversity (considering all primary producers and consumers) were higher under canopies than uncovered by canopies at the high and middle zones, but no effects occurred at the low zone. Similarly, species composition was affected by canopies at the high and middle zones, but not at the low zone. A mensurative study that surveyed the full range of canopy cover (0-100%) using nearly five times more quadrats from pristine areas yielded the same results: richness and diversity increased with canopy cover at the high and middle zones (approaching stabilization toward high cover values), but no effects occurred at the low zone. Lack of canopy effects at low elevations is related to mild habitat conditions, which canopies are unable to modify, while positive effects at higher elevations relate to the capacity of canopies to ameliorate harsh conditions. This is the first time that a combined experimental and mensurative approach shows that the same bioengineer species affect overall species richness, diversity, and composition differently along a stress gradient. Overall, protecting canopy-forming bioengineers to preserve local biodiversity should be most effective in stressful environments.

Canopy soil bacterial communities altered by severing host tree limbs

PubMed Central

Dangerfield, Cody R.; Nadkarni, Nalini M.

2017-01-01

Trees of temperate rainforests host a large biomass of epiphytic plants, which are associated with soils formed in the forest canopy. Falling of epiphytic material results in the transfer of carbon and nutrients from the canopy to the forest floor. This study provides the first characterization of bacterial communities in canopy soils enabled by high-depth environmental sequencing of 16S rRNA genes. Canopy soil included many of the same major taxonomic groups of Bacteria that are also found in ground soil, but canopy bacterial communities were lower in diversity and contained different operational taxonomic units. A field experiment was conducted with epiphytic material from six Acer macrophyllum trees in Olympic National Park, Washington, USA to document changes in the bacterial communities of soils associated with epiphytic material that falls to the forest floor. Bacterial diversity and composition of canopy soil was highly similar, but not identical, to adjacent ground soil two years after transfer to the forest floor, indicating that canopy bacteria are almost, but not completely, replaced by ground soil bacteria. Furthermore, soil associated with epiphytic material on branches that were severed from the host tree and suspended in the canopy contained altered bacterial communities that were distinct from those in canopy material moved to the forest floor. Therefore, the unique nature of canopy soil bacteria is determined in part by the host tree and not only by the physical environmental conditions associated with the canopy. Connection to the living tree appears to be a key feature of the canopy habitat. These results represent an initial survey of bacterial diversity of the canopy and provide a foundation upon which future studies can more fully investigate the ecological and evolutionary dynamics of these communities. PMID:28894646

Canopy soil bacterial communities altered by severing host tree limbs.

PubMed

Dangerfield, Cody R; Nadkarni, Nalini M; Brazelton, William J

2017-01-01

Trees of temperate rainforests host a large biomass of epiphytic plants, which are associated with soils formed in the forest canopy. Falling of epiphytic material results in the transfer of carbon and nutrients from the canopy to the forest floor. This study provides the first characterization of bacterial communities in canopy soils enabled by high-depth environmental sequencing of 16S rRNA genes. Canopy soil included many of the same major taxonomic groups of Bacteria that are also found in ground soil, but canopy bacterial communities were lower in diversity and contained different operational taxonomic units. A field experiment was conducted with epiphytic material from six Acer macrophyllum trees in Olympic National Park, Washington, USA to document changes in the bacterial communities of soils associated with epiphytic material that falls to the forest floor. Bacterial diversity and composition of canopy soil was highly similar, but not identical, to adjacent ground soil two years after transfer to the forest floor, indicating that canopy bacteria are almost, but not completely, replaced by ground soil bacteria. Furthermore, soil associated with epiphytic material on branches that were severed from the host tree and suspended in the canopy contained altered bacterial communities that were distinct from those in canopy material moved to the forest floor. Therefore, the unique nature of canopy soil bacteria is determined in part by the host tree and not only by the physical environmental conditions associated with the canopy. Connection to the living tree appears to be a key feature of the canopy habitat. These results represent an initial survey of bacterial diversity of the canopy and provide a foundation upon which future studies can more fully investigate the ecological and evolutionary dynamics of these communities.

Statistics of atmospheric turbulence within a natural black spruce forest canopy

NASA Astrophysics Data System (ADS)

Amiro, B. D.; Davis, P. A.

1988-08-01

Turbulence statistics were measured in a natural black-spruce forest canopy in southeastern Manitoba, Canada. Sonic anemometers were used to measure time series of vertical wind velocity ( w), and cup anemometers to measure horizontal wind speed ( s), above the canopy and at seven different heights within the canopy. Vertical profiles were measured during 25 runs on eight different days when conditions above the canopy were near-neutral. Profiles of s and of the standard deviation (Σ w ) of w show relatively little scatter and suggest that, for this canopy and these stability conditions, profiles can be predicted from simple measurements made above the canopy. Within the canopy, a negative skewness and a high kurtosis of the w-frequency distributions indicate asymmetry and the persistence of large, high-velocity eddies. The Eulerian time scale is only a weak function of height within the canopy. Although w-power spectra above the canopy are similar to those in the free atmosphere, we did not observe an extensive inertial subrange in the spectra within the canopy. Also, a second peak is present that is especially prominent near the ground. The lack of the inertial subrange is likely caused by the presence of sources and sinks for turbulent kinetic energy within our canopy. The secondary spectral peak is probably generated by wake turbulence caused by form drag on the wide, horizontal spruce branches.

Testing the relative contribution of positive and negative interactions in rocky intertidal communities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bertness, M.D.; Leonard, G.H.; Levine, J.M.

In contrast to many other biotic forces, such as competition and predation, the role played by habitat modification by plants and sessile animals in natural communities has not been given the experimental attention it deserves. To test the hypothesis that habitat modification by seaweed canopies can have direct positive effects on rocky intertidal communities, the authors quantified habitat amelioration by Ascophyllum nodosum canopies and its consequences on understory organisms in the Gulf of Maine, USA. At the upper and lower elevational borders of the algal canopy, the authors examined the recruitment, growth, and survivorship of common benthic organisms in canopymore » removal, and shaded canopy removal plots intended to mimic canopy habitat modifications. The algal canopy greatly reduced potential physical stresses, particularly at high tidal heights. Maximum daily rock temperatures were 5--10 C lower and evaporative water loss was in order of magnitude less under the canopy than in canopy removal plots. The response of understory organisms to canopy removal, however, was species specific and somewhat idiosyncratic. Nonetheless, in general, at the high intertidal border of the canopy the recruitment, growth, and survival of understory organisms were enhanced by the canopy, whereas at the low intertidal border canopy effects were negative or neutral. nearly half of the interactions the authors studied were positive in the high zone.« less

Effects of Kaolin Application on Light Absorption and Distribution, Radiation Use Efficiency and Photosynthesis of Almond and Walnut Canopies

PubMed Central

Rosati, Adolfo; Metcalf, Samuel G.; Buchner, Richard P.; Fulton, Allan E.; Lampinen, Bruce D.

2007-01-01

Background and Aims Kaolin applied as a suspension to plant canopies forms a film on leaves that increases reflection and reduces absorption of light. Photosynthesis of individual leaves is decreased while the photosynthesis of the whole canopy remains unaffected or even increases. This may result from a better distribution of light within the canopy following kaolin application, but this explanation has not been tested. The objective of this work was to study the effects of kaolin application on light distribution and absorption within tree canopies and, ultimately, on canopy photosynthesis and radiation use efficiency. Methods Photosynthetically active radiation (PAR) incident on individual leaves within the canopy of almond (Prunus dulcis) and walnut (Juglans regia) trees was measured before and after kaolin application in order to study PAR distribution within the canopy. The PAR incident on, and reflected and transmitted by, the canopy was measured on the same day for kaolin-sprayed and control trees in order to calculate canopy PAR absorption. These data were then used to model canopy photosynthesis and radiation use efficiency by a simple method proposed in previous work, based on the photosynthetic response to incident PAR of a top-canopy leaf. Key Results Kaolin increased incident PAR on surfaces of inner-canopy leaves, although there was an estimated 20 % loss in PAR reaching the photosynthetic apparatus, due to increased reflection. Assuming a 20 % loss of PAR, modelled photosynthesis and photosynthetic radiation use efficiency (PRUE) of kaolin-coated leaves decreased by only 6·3 %. This was due to (1) more beneficial PAR distribution within the kaolin-sprayed canopy, and (2) with decreasing PAR, leaf photosynthesis decreases less than proportionally, due to the curvature of the photosynthesis response-curve to PAR. The relatively small loss in canopy PRUE (per unit of incident PAR), coupled with the increased incident PAR on the leaf surface on inner-canopy leaves, resulted in an estimated increase in modelled photosynthesis of the canopy (+9 % in both walnut and almond). The small loss in PRUE (per unit of incident PAR) resulted in an increase in radiation use efficiency per unit of absorbed PAR, which more than compensated for the minor (7 %) reduction in canopy PAR absorption. Conclusions The results explain the apparently contradictory findings in the literature of positive or no effects of kaolin applications on canopy photosynthesis and yield, despite the decrease in photosynthesis by individual leaves when measured at the same PAR. PMID:17138580

Effects of kaolin application on light absorption and distribution, radiation use efficiency and photosynthesis of almond and walnut canopies.

PubMed

Rosati, Adolfo; Metcalf, Samuel G; Buchner, Richard P; Fulton, Allan E; Lampinen, Bruce D

2007-02-01

Kaolin applied as a suspension to plant canopies forms a film on leaves that increases reflection and reduces absorption of light. Photosynthesis of individual leaves is decreased while the photosynthesis of the whole canopy remains unaffected or even increases. This may result from a better distribution of light within the canopy following kaolin application, but this explanation has not been tested. The objective of this work was to study the effects of kaolin application on light distribution and absorption within tree canopies and, ultimately, on canopy photosynthesis and radiation use efficiency. Photosynthetically active radiation (PAR) incident on individual leaves within the canopy of almond (Prunus dulcis) and walnut (Juglans regia) trees was measured before and after kaolin application in order to study PAR distribution within the canopy. The PAR incident on, and reflected and transmitted by, the canopy was measured on the same day for kaolin-sprayed and control trees in order to calculate canopy PAR absorption. These data were then used to model canopy photosynthesis and radiation use efficiency by a simple method proposed in previous work, based on the photosynthetic response to incident PAR of a top-canopy leaf. Kaolin increased incident PAR on surfaces of inner-canopy leaves, although there was an estimated 20 % loss in PAR reaching the photosynthetic apparatus, due to increased reflection. Assuming a 20 % loss of PAR, modelled photosynthesis and photosynthetic radiation use efficiency (PRUE) of kaolin-coated leaves decreased by only 6.3 %. This was due to (1) more beneficial PAR distribution within the kaolin-sprayed canopy, and (2) with decreasing PAR, leaf photosynthesis decreases less than proportionally, due to the curvature of the photosynthesis response-curve to PAR. The relatively small loss in canopy PRUE (per unit of incident PAR), coupled with the increased incident PAR on the leaf surface on inner-canopy leaves, resulted in an estimated increase in modelled photosynthesis of the canopy (+9 % in both walnut and almond). The small loss in PRUE (per unit of incident PAR) resulted in an increase in radiation use efficiency per unit of absorbed PAR, which more than compensated for the minor (7 %) reduction in canopy PAR absorption. The results explain the apparently contradictory findings in the literature of positive or no effects of kaolin applications on canopy photosynthesis and yield, despite the decrease in photosynthesis by individual leaves when measured at the same PAR.

Landscape-scale changes in forest canopy structure across a partially logged tropical peat swamp

NASA Astrophysics Data System (ADS)

Wedeux, B. M. M.; Coomes, D. A.

2015-11-01

Forest canopy structure is strongly influenced by environmental factors and disturbance, and in turn influences key ecosystem processes including productivity, evapotranspiration and habitat availability. In tropical forests increasingly modified by human activities, the interplay between environmental factors and disturbance legacies on forest canopy structure across landscapes is practically unexplored. We used airborne laser scanning (ALS) data to measure the canopy of old-growth and selectively logged peat swamp forest across a peat dome in Central Kalimantan, Indonesia, and quantified how canopy structure metrics varied with peat depth and under logging. Several million canopy gaps in different height cross-sections of the canopy were measured in 100 plots of 1 km2 spanning the peat dome, allowing us to describe canopy structure with seven metrics. Old-growth forest became shorter and had simpler vertical canopy profiles on deeper peat, consistent with previous work linking deep peat to stunted tree growth. Gap size frequency distributions (GSFDs) indicated fewer and smaller canopy gaps on the deeper peat (i.e. the scaling exponent of Pareto functions increased from 1.76 to 3.76 with peat depth). Areas subjected to concessionary logging until 2000, and illegal logging since then, had the same canopy top height as old-growth forest, indicating the persistence of some large trees, but mean canopy height was significantly reduced. With logging, the total area of canopy gaps increased and the GSFD scaling exponent was reduced. Logging effects were most evident on the deepest peat, where nutrient depletion and waterlogged conditions restrain tree growth and recovery. A tight relationship exists between canopy structure and peat depth gradient within the old-growth tropical peat swamp forest. This relationship breaks down after selective logging, with canopy structural recovery, as observed by ALS, modulated by environmental conditions. These findings improve our understanding of tropical peat swamp ecology and provide important insights for managers aiming to restore degraded forests.

Differences in BVOC oxidation and SOA formation above and below the forest canopy

NASA Astrophysics Data System (ADS)

Schulze, Benjamin C.; Wallace, Henry W.; Flynn, James H.; Lefer, Barry L.; Erickson, Matt H.; Jobson, B. Tom; Dusanter, Sebastien; Griffith, Stephen M.; Hansen, Robert F.; Stevens, Philip S.; VanReken, Timothy; Griffin, Robert J.

2017-02-01

Gas-phase biogenic volatile organic compounds (BVOCs) are oxidized in the troposphere to produce secondary pollutants such as ozone (O3), organic nitrates (RONO2), and secondary organic aerosol (SOA). Two coupled zero-dimensional models have been used to investigate differences in oxidation and SOA production from isoprene and α-pinene, especially with respect to the nitrate radical (NO3), above and below a forest canopy in rural Michigan. In both modeled environments (above and below the canopy), NO3 mixing ratios are relatively small (< 0.5 pptv); however, daytime (08:00-20:00 LT) mixing ratios below the canopy are 2 to 3 times larger than those above. As a result of this difference, NO3 contributes 12 % of total daytime α-pinene oxidation below the canopy while only contributing 4 % above. Increasing background pollutant levels to simulate a more polluted suburban or peri-urban forest environment increases the average contribution of NO3 to daytime below-canopy α-pinene oxidation to 32 %. Gas-phase RONO2 produced through NO3 oxidation undergoes net transport upward from the below-canopy environment during the day, and this transport contributes up to 30 % of total NO3-derived RONO2 production above the canopy in the morning (˜ 07:00). Modeled SOA mass loadings above and below the canopy ultimately differ by less than 0.5 µg m-3, and extremely low-volatility organic compounds dominate SOA composition. Lower temperatures below the canopy cause increased partitioning of semi-volatile gas-phase products to the particle phase and up to 35 % larger SOA mass loadings of these products relative to above the canopy in the model. Including transport between above- and below-canopy environments increases above-canopy NO3-derived α-pinene RONO2 SOA mass by as much as 45 %, suggesting that below-canopy chemical processes substantially influence above-canopy SOA mass loadings, especially with regard to monoterpene-derived RONO2.

Turbulent Flow and Large Surface Wave Events in the Marine Boundary Layers

DTIC Science & Technology

2013-08-22

Nether-784 lands Academy of Arts and Sciences.785 35 Wyngaard, J. C., 2004: Toward numerical modeling in the Terra Incognita. J. Atmos. Sci.,786 61...surface roughness, vegetative canopies, wind waves and local orography all influence wind turbine performance to varying degrees. For exam- ple, the...teor crater, Bull. Amer. Meteorol. Soc., 89, 127–150. Wyngaard, J. C., 2004: Toward numerical modeling in the Terra Incognita, J. Atmos. Sci., 61

Soybean canopy reflectance modeling data sets

NASA Technical Reports Server (NTRS)

Ranson, K. J.; Biehl, L. L.; Daughtry, C. S. T.

1984-01-01

Numerous mathematical models of the interaction of radiation with vegetation canopies have been developed over the last two decades. However, data with which to exercise and validate these models are scarce. During three days in the summer of 1980, experiments are conducted with the objective of gaining insight about the effects of solar illumination and view angles on soybean canopy reflectance. In concert with these experiment, extensive measurements of the soybean canopies are obtained. This document is a compilation of the bidirectional reflectance factors, agronomic, characteristics, canopy geometry, and leaf, stem, and pod optical properties of the soybean canopies. These data sets should be suitable for use with most vegetation canopy reflectance models.

A laser technique for characterizing the geometry of plant canopies

NASA Technical Reports Server (NTRS)

Vanderbilt, V. C.; Silva, L. F.; Bauer, M. E.

1977-01-01

The interception of solar power by the canopy is investigated as a function of solar zenith angle (time), component of the canopy, and depth into the canopy. The projected foliage area, cumulative leaf area, and view factors within the canopy are examined as a function of the same parameters. Two systems are proposed that are capable of describing the geometrical aspects of a vegetative canopy and of operation in an automatic mode. Either system would provide sufficient data to yield a numerical map of the foliage area in the canopy. Both systems would involve the collection of large data sets in a short time period using minimal manpower.

Development of an Unmanned Aerial Vehicle-Borne Crop-Growth Monitoring System.

PubMed

Ni, Jun; Yao, Lili; Zhang, Jingchao; Cao, Weixing; Zhu, Yan; Tai, Xiuxiang

2017-03-03

In view of the demand for a low-cost, high-throughput method for the continuous acquisition of crop growth information, this study describes a crop-growth monitoring system which uses an unmanned aerial vehicle (UAV) as an operating platform. The system is capable of real-time online acquisition of various major indexes, e.g., the normalized difference vegetation index (NDVI) of the crop canopy, ratio vegetation index (RVI), leaf nitrogen accumulation (LNA), leaf area index (LAI), and leaf dry weight (LDW). By carrying out three-dimensional numerical simulations based on computational fluid dynamics, spatial distributions were obtained for the UAV down-wash flow fields on the surface of the crop canopy. Based on the flow-field characteristics and geometrical dimensions, a UAV-borne crop-growth sensor was designed. Our field experiments show that the monitoring system has good dynamic stability and measurement accuracy over the range of operating altitudes of the sensor. The linear fitting determination coefficients (R²) for the output RVI value with respect to LNA, LAI, and LDW are 0.63, 0.69, and 0.66, respectively, and the Root-mean-square errors (RMSEs) are 1.42, 1.02 and 3.09, respectively. The equivalent figures for the output NDVI value are 0.60, 0.65, and 0.62 (LNA, LAI, and LDW, respectively) and the RMSEs are 1.44, 1.01 and 3.01, respectively.

Development of an Unmanned Aerial Vehicle-Borne Crop-Growth Monitoring System

PubMed Central

Ni, Jun; Yao, Lili; Zhang, Jingchao; Cao, Weixing; Zhu, Yan; Tai, Xiuxiang

2017-01-01

In view of the demand for a low-cost, high-throughput method for the continuous acquisition of crop growth information, this study describes a crop-growth monitoring system which uses an unmanned aerial vehicle (UAV) as an operating platform. The system is capable of real-time online acquisition of various major indexes, e.g., the normalized difference vegetation index (NDVI) of the crop canopy, ratio vegetation index (RVI), leaf nitrogen accumulation (LNA), leaf area index (LAI), and leaf dry weight (LDW). By carrying out three-dimensional numerical simulations based on computational fluid dynamics, spatial distributions were obtained for the UAV down-wash flow fields on the surface of the crop canopy. Based on the flow-field characteristics and geometrical dimensions, a UAV-borne crop-growth sensor was designed. Our field experiments show that the monitoring system has good dynamic stability and measurement accuracy over the range of operating altitudes of the sensor. The linear fitting determination coefficients (R2) for the output RVI value with respect to LNA, LAI, and LDW are 0.63, 0.69, and 0.66, respectively, and the Root-mean-square errors (RMSEs) are 1.42, 1.02 and 3.09, respectively. The equivalent figures for the output NDVI value are 0.60, 0.65, and 0.62 (LNA, LAI, and LDW, respectively) and the RMSEs are 1.44, 1.01 and 3.01, respectively. PMID:28273815

A simple, approximate model of parachute inflation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Macha, J.M.

1992-11-01

A simple, approximate model of parachute inflation is described. The model is based on the traditional, practical treatment of the fluid resistance of rigid bodies in nonsteady flow, with appropriate extensions to accommodate the change in canopy inflated shape. Correlations for the steady drag and steady radial force as functions of the inflated radius are required as input to the dynamic model. In a novel approach, the radial force is expressed in terms of easily obtainable drag and reefing fine tension measurements. A series of wind tunnel experiments provides the needed correlations. Coefficients associated with the added mass of fluidmore » are evaluated by calibrating the model against an extensive and reliable set of flight data. A parameter is introduced which appears to universally govern the strong dependence of the axial added mass coefficient on motion history. Through comparisons with flight data, the model is shown to realistically predict inflation forces for ribbon and ringslot canopies over a wide range of sizes and deployment conditions.« less

A simple, approximate model of parachute inflation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Macha, J.M.

1992-01-01

A simple, approximate model of parachute inflation is described. The model is based on the traditional, practical treatment of the fluid resistance of rigid bodies in nonsteady flow, with appropriate extensions to accommodate the change in canopy inflated shape. Correlations for the steady drag and steady radial force as functions of the inflated radius are required as input to the dynamic model. In a novel approach, the radial force is expressed in terms of easily obtainable drag and reefing fine tension measurements. A series of wind tunnel experiments provides the needed correlations. Coefficients associated with the added mass of fluidmore » are evaluated by calibrating the model against an extensive and reliable set of flight data. A parameter is introduced which appears to universally govern the strong dependence of the axial added mass coefficient on motion history. Through comparisons with flight data, the model is shown to realistically predict inflation forces for ribbon and ringslot canopies over a wide range of sizes and deployment conditions.« less

Measured and predicted changes in tree and stand water use following high-intensity thinning of an 8-year-old Eucalyptus nitens plantation.

PubMed

Medhurst, Jane L; Battaglia, Michael; Beadle, Christopher L

2002-08-01

We investigated changes in the pattern of water use of an 8-year-old Eucalyptus nitens (Deane and Maiden) Maiden plantation soon after thinning. Sap flow sensors using heat pulse technology were deployed across three stands thinned to a final density of 100, 250 or 600 trees ha-1 plus an unthinned control (1250 trees ha-1). Changes in the relationship between tree size and daily water use were measured for 4 to 7 months after thinning. Thinning had no effect on sapwood water content. The increase in tree water use as a result of thinning was driven largely by significant changes in the radial pattern of sap velocity through the sapwood. The use of a canopy fraction factor in the Penman-Monteith equation to account for discontinuous canopies showed promise as a simple and effective method of scaling the model to predict transpiration from thinned plantations.

The aerodynamics of supersonic parachutes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peterson, C.W.

1987-06-01

A discussion of the aerodynamics and performance of parachutes flying at supersonic speeds is the focus of this paper. Typical performance requirements for supersonic parachute systems are presented, followed by a review of the literature on supersonic parachute configurations and their drag characteristics. Data from a recent supersonic wind tunnel test series is summarized. The value and limitations of supersonic wind tunnel data on hemisflo and 20-degree conical ribbon parachutes behind several forebody shapes and diameters are discussed. Test techniques were derived which avoided many of the opportunities to obtain erroneous supersonic parachute drag data in wind tunnels. Preliminary correlationsmore » of supersonic parachute drag with Mach number, forebody shape and diameter, canopy porosity, inflated canopy diameter and stability are presented. Supersonic parachute design considerations are discussed and applied to a M = 2 parachute system designed and tested at Sandia. It is shown that the performance of parachutes in supersonic flows is a strong function of parachute design parameters and their interactions with the payload wake.« less

Climatic, biological, and land cover controls on the exchange of gas-phase semivolatile chemical pollutants between forest canopies and the atmosphere.

PubMed

Nizzetto, Luca; Perlinger, Judith A

2012-03-06

An ecophysiological model of a structured broadleaved forest canopy was coupled to a chemical fate model of the air-canopy exchange of gaseous semivolatile chemicals to dynamically assess the short-term (hours) and medium term (days to season) air-canopy exchange and the influence of biological, climatic, and land cover drivers on the dynamics of the air-canopy exchange and on the canopy storage for airborne semivolatile pollutants. The chemical fate model accounts for effects of short-term variations in air temperature, wind speed, stomatal opening, and leaf energy balance, all as a function of layer in the canopy. Simulations showed the potential occurrence of intense short/medium term re-emission of pollutants having log K(OA) up to 10.7 from the canopy as a result of environmental forcing. In addition, relatively small interannual variations in seasonally averaged air temperature, canopy biomass, and precipitation can produce relevant changes in the canopy storage capacity for the chemicals. It was estimated that possible climate change related variability in environmental parameters (e.g., an increase of 2 °C in seasonally averaged air temperature in combination with a 10% reduction in canopy biomass due to, e.g., disturbance or acclimatization) may cause a reduction in canopy storage capacity of up to 15-25%, favoring re-emission and potential for long-range atmospheric transport. On the other hand, an increase of 300% in yearly precipitation can increase canopy sequestration by 2-7% for the less hydrophobic compounds.

Pitot-pressure distributions of the flow field of a delta-wing orbiter

NASA Technical Reports Server (NTRS)

Cleary, J. W.

1972-01-01

Pitot pressure distributions of the flow field of a 0.0075-scale model of a typical delta wing shuttle orbiter are presented. Results are given for the windward and leeward sides on centerline in the angle-of-attack plane from wind tunnel tests conducted in air. Distributions are shown for three axial stations X/L = .35, .60, and .98 and for angles of attack from 0 to 60 deg. The tests were made at a Mach number of 7.4 and for Reynolds numbers based on body length from 1,500,000 to 9,000,000. The windward distributions at the two survey stations forward of the body boat tail demonstrate the compressive aspects of the flow from the shock wave to the body. Conversely, the distributions at the aft station display an expansion of the flow that is attributed to body boat tail. On the lee side, results are given at low angles of attack that illustrate the complicating aspects of the canopy on the flow field, while results are given to show the effects of flow separation at high angles of attack.

The complex relationship between climate and sugar maple health: Climate change implications in Vermont for a key northern hardwood species

Treesearch

Evan M. Oswald; Jennifer Pontius; Shelly A. Rayback; Paul G. Schaberg; Sandra H. Wilmot; Lesley-Ann Dupigny-Giroux

2018-01-01

This study compared 141 ecologically relevant climate metrics to field assessments of sugar maple (Acer saccharum Marsh.) canopy condition across Vermont, USA from 1988 to 2012. After removing the influence of disturbance events during this time period to isolate the impact of climate, we identified five climate metrics that were significantly...

Taking a systems approach to ecological systems

USGS Publications Warehouse

Grace, James B.

2015-01-01

Increasingly, there is interest in a systems-level understanding of ecological problems, which requires the evaluation of more complex, causal hypotheses. In this issue of the Journal of Vegetation Science, Soliveres et al. use structural equation modeling to test a causal network hypothesis about how tree canopies affect understorey communities. Historical analysis suggests structural equation modeling has been under-utilized in ecology.

Airborne lidar-based estimates of tropical forest structure in complex terrain: opportunities and trade-offs for REDD+

Treesearch

Veronika Leitold; Michael Keller; Douglas C Morton; Bruce D Cook; Yosio E Shimabukuro

2015-01-01

Background: Carbon stocks and fluxes in tropical forests remain large sources of uncertainty in the global carbon budget. Airborne lidar remote sensing is a powerful tool for estimating aboveground biomass, provided that lidar measurements penetrate dense forest vegetation to generate accurate estimates of surface topography and canopy heights. Tropical forest areas...

Rapid measurement of the three-dimensional distribution of leaf orientation and the leaf angle probability density function using terrestrial LiDAR scanning

USDA-ARS?s Scientific Manuscript database

Leaf orientation plays a fundamental role in many transport processes in plant canopies. At the plant or stand level, leaf orientation is often highly anisotropic and heterogeneous, yet most analyses neglect such complexity. In many cases, this is due to the difficulty in measuring the spatial varia...

Comparing large eddy simulations and measurements of the turbulent kinetic energy budget in an urban canopy layer

NASA Astrophysics Data System (ADS)

Parlange, M. B.; Giometto, M. G.; Meneveau, C. V.; Fang, J.; Christen, A.

2013-12-01

Local turbulent kinetic energy (TKE) in the Urban Canopy Layer (UCL) is highly dependent on the actual configuration of obstacles relative to mean wind and stability. For many applications, building-resolving information is neither required nor feasible, and simply beyond the numerical capabilities of operational systems. Common urban canopy parameterizations (UCP) used in dispersion and mesoscale forecasting models hence rely on a horizontally averaged approach, where the UCL is represented as a 1D column, often for simplified geometries such as infinite street canyons. We use Large Eddy Simulations (LES) of the airflow over and within a realistic urban geometry in the city of Basel, Switzerland to determine all terms of the TKE budget in order to guide and validate current approaches used in UCPs. A series of high-resolution LES runs of the fully developed flow are performed in order to characterize the TKE budget terms in a horizontally averaged frame of view for various directions of the approaching flow under neutral conditions. Equations are solved on a regular domain with a horizontal resolution of 2 m. A Lagrangian scale-dependent LES model is adopted to parametrize the subgrid-scale stresses and buildings are taken into account adopting an immersed boundary approach with the geometry taken from a highly accurate digital building model. The modeled (periodic) domain is centered on the location of a 32 m tall tower, where measurements of turbulence were performed, during the BUBBLE program in 2001/02 (Rotach et al., Theor. Appl. Clim., 82, 231-261, 2005). Selected terms of the TKE budget were inferred from six levels of ultrasonic anemometer measurements operated over nearly a full year between ground level and two times the mean building height. This contribution answers the questions: (1) How well do TKE budget terms calculated by the LES at the exact tower location match the single point measurements on the tower under comparable conditions? (2) How representative are the single-point measurements at the tower-location compared to the horizontally-averaged TKE budget in the entire urban domain? (3) How important are non-measurable terms of the TKE budget (wake production, dispersive transport, pressure transport) under the current real urban geometry? Our results show good statistical agreement between tower measurements and numerically resolved quantities, validating the model and confirming our immersed boundary approach in the LES a valuable tool to study turbulence and dispersion within real UCLs. Turbulent kinetic energy (TKE) in the UCL is primarily produced at roof-level, and turbulence is transported down into the cavities of the urban canopy (street canyons, backyards). From our results it is also clear how tower measurements cannot be used to quantify all terms in a horizontally-averaged view and the non-measured dispersive terms are important in a real canopy.

The Effects of Land Surface Heating And Roughness Elements on the Structure and Scaling Laws of Atmospheric Boundary Layer Turbulence

NASA Astrophysics Data System (ADS)

Ghannam, Khaled

The atmospheric boundary-layer is the lowest 500-2000 m of the Earth's atmosphere where much of human life and ecosystem services reside. This layer responds to land surface (e.g. buoyancy and roughness elements) and slowly evolving free tropospheric (e.g. temperature and humidity lapse rates) conditions that arguably mediate and modulate biosphere-atmosphere interactions. Such response often results in spatially- and temporally-rich turbulence scales that continue to be the subject of inquiry given their significance to a plethora of applications in environmental sciences and engineering. The work here addresses key aspects of boundary layer turbulence with a focus on the role of roughness elements (vegetation canopies) and buoyancy (surface heating) in modifying the well-studied picture of shear-dominated wall-bounded turbulence. A combination of laboratory channel experiments, field experiments, and numerical simulations are used to explore three distinct aspects of boundary layer turbulence. These are: • The concept of ergodicity in turbulence statistics within canopies: It has been long-recognized that homogeneous and stationary turbulence is ergodic, but less is known about the effects of inhomogeneity introduced by the presence of canopies on the turbulence statistics. A high resolution (temporal and spatial) flume experiment is used here to test the convergence of the time statistics of turbulent scalar concentrations to their ensemble (spatio-temporal) counterpart. The findings indicate that within-canopy scalar statistics have a tendency to be ergodic, mostly in shallow layers (close to canopy top) where the sweeping flow events appear to randomize the statistics. Deeper layers within the canopy are dominated by low-dimensional (quasi-deterministic) von Karman vortices that tend to break ergodicity. • Scaling laws of turbulent velocity spectra and structure functions in near-surface atmospheric turbulence: the existence of a logarithmic scaling in the structure function of the longitudinal and vertical velocity components is examined using five experimental data sets that span the roughness sub-layer above vegetation canopies, the atmospheric surface-layer above a lake and a grass field, and an open channel experiment. The results indicate that close to the wall/surface, this scaling exists in the longitudinal velocity structure function only, with the vertical velocity counterpart exhibiting a much narrower extent of this range due to smaller separation of scales. Phenomenological aspects of the large-scale eddies show that the length scale formed by the friction velocity and energy dissipation acts as a dominant similarity length scale in collapsing experimental data at different heights, mainly due to the imbalance between local production and dissipation of turbulence kinetic energy. • Nonlocal heat transport in the convective atmospheric boundary-layer: Failure of the mean gradient-diffusion (K-theory) in the convective boundary-layer is explored. Using large eddy simulation runs for the atmospheric boundary layer spanning weakly to strongly convective conditions, a generic diagnostic framework that encodes the role of third-order moments in nonlocal heat transport is developed and tested. The premise is that these nonlocal effects are responsible for the inherent asymmetry in vertical transport, and hence the necessary non-Gaussian nature of the joint probability density function (JPDF) of vertical velocity and potential temperature must account for these effects. Conditional sampling (quadrant analysis) of this function and the imbalance between the flow mechanisms of ejections and sweeps are used to characterize this asymmetry, which is then linked to the third-order moments using a cumulant-discard method for the Gram-Charlier expansion of the JPDF. The connection between the ejection-sweep events and the third-order moments shows that the concepts of bottom-up/top-down diffusion, or updraft/downdraft models, are accounted for by various quadrants of this joint probability density function. To this end, future research directions that build upon this work are also discussed.

Estimating canopy cover from standard forest inventory measurements in western Oregon

Treesearch

Anne McIntosh; Andrew Gray; Steven. Garman

2012-01-01

Reliable measures of canopy cover are important in the management of public and private forests. However, direct sampling of canopy cover is both labor- and time-intensive. More efficient methods for estimating percent canopy cover could be empirically derived relationships between more readily measured stand attributes and canopy cover or, alternatively, the use of...

Effects of alternative treatments on canopy fuel characteristics in five conifer stands

Treesearch

Joe H. Scott; Elizabeth D. Reinhardt

2007-01-01

A detailed study of canopy fuel characteristics in five different forest types provided a unique dataset for simulating the effects of various stand manipulation treatments on canopy fuels. Low thinning, low thinning with commercial dbh limit, and crown thinning had similar effects on canopy bulk density (CBD) and canopy fuel load (CFL...

Estimating Canopy Dark Respiration for Crop Models

NASA Technical Reports Server (NTRS)

Monje Mejia, Oscar Alberto

2014-01-01

Crop production is obtained from accurate estimates of daily carbon gain.Canopy gross photosynthesis (Pgross) can be estimated from biochemical models of photosynthesis using sun and shaded leaf portions and the amount of intercepted photosyntheticallyactive radiation (PAR).In turn, canopy daily net carbon gain can be estimated from canopy daily gross photosynthesis when canopy dark respiration (Rd) is known.

Thermal Infrared Hot Spot and Dependence on Canopy Geometry

NASA Technical Reports Server (NTRS)

Smith, James A.; Ballard, Jerrell R., Jr.; Smith, David E. (Technical Monitor)

2001-01-01

We perform theoretical calculations of the canopy thermal infrared (TIR) hot spot using a first principles 3-D model described earlier. Various theoretical canopies of varying leaf size and for differing canopy height are used to illustrate the magnitude of the TIR effect. Our results are similar to predicted behavior in the reflective hot spot as a function of canopy geometry and comparable to TIR measurements from the literature and our own simple ground experiments. We apply the MODTRAN atmospheric code to estimate the at-sensor variation in brightness temperature with view direction in the solar principal plane. For simple homogeneous canopies, we predict canopy thermal infrared hot spot variations of 2 degrees C at the surface with respect to nadir viewing. Dependence on leaf size is weak as long as the ratio of leaf size to canopy height is maintained. However, the angular width of the hot spot increases as the ratio of leaf diameter to canopy height increases. Atmospheric effects minimize but do not eliminate the TIR hot spot at satellite altitudes.

Chlorophyll Can Be Reduced in Crop Canopies with Little Penalty to Photosynthesis1[OPEN

PubMed Central

Drewry, Darren T.; VanLoocke, Andy; Cho, Young B.

2018-01-01

The hypothesis that reducing chlorophyll content (Chl) can increase canopy photosynthesis in soybeans was tested using an advanced model of canopy photosynthesis. The relationship among leaf Chl, leaf optical properties, and photosynthetic biochemical capacity was measured in 67 soybean (Glycine max) accessions showing large variation in leaf Chl. These relationships were integrated into a biophysical model of canopy-scale photosynthesis to simulate the intercanopy light environment and carbon assimilation capacity of canopies with wild type, a Chl-deficient mutant (Y11y11), and 67 other mutants spanning the extremes of Chl to quantify the impact of variation in leaf-level Chl on canopy-scale photosynthetic assimilation and identify possible opportunities for improving canopy photosynthesis through Chl reduction. These simulations demonstrate that canopy photosynthesis should not increase with Chl reduction due to increases in leaf reflectance and nonoptimal distribution of canopy nitrogen. However, similar rates of canopy photosynthesis can be maintained with a 9% savings in leaf nitrogen resulting from decreased Chl. Additionally, analysis of these simulations indicate that the inability of Chl reductions to increase photosynthesis arises primarily from the connection between Chl and leaf reflectance and secondarily from the mismatch between the vertical distribution of leaf nitrogen and the light absorption profile. These simulations suggest that future work should explore the possibility of using reduced Chl to improve canopy performance by adapting the distribution of the “saved” nitrogen within the canopy to take greater advantage of the more deeply penetrating light. PMID:29061904

Effects of location within the tree canopy on carbohydrates, organic acids, amino acids and phenolic compounds in the fruit peel and flesh from three apple (Malus × domestica) cultivars

PubMed Central

Feng, Fengjuan; Li, Mingjun; Ma, Fengwang; Cheng, Lailiang

2014-01-01

Fruits from three cultivars of apple (Malus × domestica Borkh.)—‘McIntosh’, ‘Gala’ and ‘Mutsu’—were harvested from the exterior and interior of the tree canopy. Peel and flesh tissues were sampled separately to determine how the position of the fruit on the tree might affect the levels of the primary and secondary metabolites in the fruit. Fruit from the outer-canopy had a higher fresh weight and a higher soluble solids content compared with inner-canopy fruit. Both the flesh and peel of the outer-canopy fruit had higher concentrations of soluble sugars and sugar alcohols, but lower starch concentrations than the inner-canopy fruit. Canopy position did not significantly affect malic acid concentrations, except in the peel of ‘McIntosh’ and the flesh of ‘Mutsu’. Although levels of ascorbic and succinic acids were higher in the peel of the outer-canopy fruit, the responses of other organic acids to canopy position depended on tissue type and cultivar. Except for histidine, lysine, threonine and glycine, most amino acids accumulated at higher concentrations in the inner-canopy fruit. By contrast, levels of phenolic compounds from both the peel and flesh were significantly higher in the outer-canopy fruit. The significant effects of location within the canopy on both primary metabolites and secondary metabolites demonstrate the importance of light exposure on apple fruit quality. PMID:26504536

Rainfall interception, and its modeling, in Pine and Eucalypt stands in Portugal

NASA Astrophysics Data System (ADS)

de Coninck, H. L.; Keizer, J. J.; Coelho, C. O. A.; van Dijck, S. J. E.; Jetten, V. G.; Warmerdam, P. M. M.; Ferreira, A. J. D.; Boulet, A. K.

2003-04-01

Within the framework of the EU-funded CLIMED project (ICA3-2000-30005), concerning the water management implications of foreseeable climate and land-use changes in central Portugal and northern Africa, the event-based Limburg Soil Erosion Model (LISEM; www.geog.uu.nl/lisem) is intended to provide further insight into water yields, peak flow and timing under possible future rainfall regimes. In the Portuguese study area, LISEM is being applied to two small (< 1km2) catchments with contrasting land covers, dominated by Pinus pinaster Ait. and Eucalyptus globulus Labill. tree stands, respectively. In LISEM, cumulative interception is modelled using the empirical formula by Ashton (1979), i.e. as a function of vegetation cover and canopy storage capacity, which in turn is estimated from the Leaf Area Index using the Von Hoyningen-Huenes (1981) formula. Besides that the appropriateness of the LISEM interception module for forested areas may be questioned, its (optional) substitution in LISEM by a more process-based model like that of Rutter would be more in line with LISEM’s overall model structure. This study has as main aims to assess the suitability of (1) the Ashton formula and (2) the sparse variants of the Gash and Rutter interception models to model rainfall interception measurements carried out in a Pinus pinaster Ait. stand as well as a Eucalyptus globulus Labill. stand. Unlike in the bulk of published studies on forest interception, the experimental set-up structures the sampling space in below-canopy and gaps. The below-canopy sampling space is further divided into two classes on the basis of dendrometric data from a prior inventory of 20x20 m. The two stands are equipped with 15 below-canopy and 5 gap rainfall collectors, 3 of which are automated tipping-buckets gauges. Stemflow is measured for 10 trees per stand, which includes 2 trees with automated tipping-bucket (0.5 l/tip). Between November 2002 and the present time, 31 rainfall events totaling about 850 mm were recorded. Interestingly, these preliminary results reveal that below-canopy rainfall may exceed gap rainfall. This phenomenon can be explained by non-vertical rainfall, increasing the probability of droplets hitting the tree canopy instead of the forest floor. If further measurements confirm it to occur regularly, the suitability of not only the LISEM interception module but also the sparse Rutter and Gash models will, at least conceptually, be in doubt.

Canopy openings and white-tailed deer influence the understory vegetation in mixed oak woodlots

Treesearch

Todd W. Bowersox; Gerald L. Storm; Walter M. Tzilkowski

1995-01-01

Effects of canopy opening and white-tailed deer on ground level vegetation are being assessed in south-central Pennsylvania. Herbaceous plants and woody seedlings are being monitored in three unevenaged, mixed oak woodlots at Gettysburg National Military Park. Canopy opening levels on 0.20 ha treatment units were closed (~100% canopy), small (50-60% canopy) and large (...

Modification of VanWagner's canopy fire propagation model

Treesearch

James Dickinson; Andrew Robinson; Richy Harrod; Paul Gessler; Alistair Smith

2007-01-01

The conditions necessary for the combustion of canopy fuels are not well known but are assumed to be highly influenced by the volume through which the canopy fuels are dispersed, known as canopy bulk density (CBD). Propagating crown fire is defined as a continuous wall of flame from the bottom to the top of the canopy, implying crown fire propagation is actually...

Canopy arthropod responses to experimental canopy opening and debris deposition in a tropical rainforest subject to hurricanes

Treesearch

Timothy D. Schowalter; Michael R. Willig; Steven J. Presley

2014-01-01

We analyzed responses of canopy arthropods on seven representative early and late successional overstory and understory tree species to a canopy trimming experiment designed to separate effects of canopy opening and debris pulse (resulting from hurricane disturbance) in a tropical rainforest ecosystem at the Luquillo Experimental Forest Long-Term Ecological Research (...

ForestCrowns: a software tool for analyzing ground-based digital photographs of forest canopies

Treesearch

Matthew F. Winn; Sang-Mook Lee; Phillip A. Araman

2013-01-01

Canopy coverage is a key variable used to characterize forest structure. In addition, the light transmitted through the canopy is an important ecological indicator of plant and animal habitat and understory climate conditions. A common ground-based method used to document canopy coverage is to take digital photographs from below the canopy. To assist with analyzing...

Vertical stratification of beetles (Coleoptera) and flies (Diptera) in temperate forest canopies.

PubMed

Maguire, Dorothy Y; Robert, Katleen; Brochu, Kristen; Larrivée, Maxim; Buddle, Christopher M; Wheeler, Terry A

2014-02-01

Forest canopies support high arthropod biodiversity, but in temperate canopies, little is known about the spatial distribution of these arthropods. This is an important first step toward understanding ecological roles of insects in temperate canopies. The objective of this study was to assess differences in the species composition of two dominant and diverse taxa (Diptera and Coleoptera) along a vertical gradient in temperate deciduous forest canopies. Five sugar maple trees from each of three deciduous forest sites in southern Quebec were sampled using a combination of window and trunk traps placed in three vertical strata (understory, mid-canopy, and upper-canopy) for three sampling periods throughout the summer. Coleoptera species richness and abundance did not differ between canopy heights, but more specimens and species of Diptera were collected in the upper-canopy. Community composition of Coleoptera and Diptera varied significantly by trap height. Window traps collected more specimens and species of Coleoptera than trunk traps, although both trap types should be used to maximize representation of the entire Coleoptera community. There were no differences in abundance, diversity, or composition of Diptera collected between trap types. Our data confirm the relevance of sampling all strata in a forest when studying canopy arthropod biodiversity.

Correction to the plant canopy gap-size analysis theory used by the Tracing Radiation and Architecture of Canopies instrument

NASA Astrophysics Data System (ADS)

Leblanc, Sylvain G.

2002-12-01

A plant canopy gap-size analyzer, the Tracing Radiation and Architecture of Canopies (TRAC), developed by Chen and Cihlar [Appl. Opt. 34, 6211 (1995)] and commercialized by 3rd Wave Engineering (Nepean, Canada), has been used around the world to quantify the fraction of photosynthetically active radiation absorbed by plant canopies, the leaf area index (LAI), and canopy architectural parameters. The TRAC is walked under a canopy along transects to measure sunflecks that are converted into a gap-size distribution. A numerical gap-removal technique is performed to remove gaps that are not theoretically possible in a random canopy. The resulting reduced gap-size distribution is used to quantify the heterogeneity of the canopy and to improve LAI measurements. It is explicitly shown here that the original derivation of the clumping index was missing a normalization factor. For a very clumped canopy with a large gap fraction, the resulting LAI can be more than 100% smaller than previously estimated. A test case is used to demonstrate that the new clumping index derivation allows a more accurate change of LAI to be measured.

Changes in leaf area, nitrogen content and canopy photosynthesis in soybean exposed to an ozone concentration gradient.

PubMed

Oikawa, Shimpei; Ainsworth, Elizabeth A

2016-08-01

Influences of ozone (O3) on light-saturated rates of photosynthesis in crop leaves have been well documented. To increase our understanding of O3 effects on individual- or stand level productivity, a mechanistic understanding of factors determining canopy photosynthesis is necessary. We used a canopy model to scale photosynthesis from leaf to canopy, and analyzed the importance of canopy structural and leaf ecophysiological characteristics in determining canopy photosynthesis in soybean stands exposed to 9 concentrations of [O3] (37-116 ppb; 9-h mean). Light intensity and N content peaked in upper canopy layers, and sharply decreased through the lower canopy. Plant leaf area decreased with increasing [O3] allowing for greater light intensity to reach lower canopy levels. At the leaf level, light-saturated photosynthesis decreased and dark respiration increased with increasing [O3]. These data were used to calculate daily net canopy photosynthesis (Pc). Pc decreased with increasing [O3] with an average decrease of 10% for an increase in [O3] of 10 ppb, and which was similar to changes in above-ground dry mass production of the stands. Absolute daily net photosynthesis of lower layers was very low and thus the decrease in photosynthesis in the lower canopy caused by elevated [O3] had only minor significance for total canopy photosynthesis. Sensitivity analyses revealed that the decrease in Pc was associated with changes in leaf ecophysiology but not with decrease in leaf area. The soybean stands were very crowded, the leaves were highly mutually shaded, and sufficient light for positive carbon balance did not penetrate to lower canopy leaves, even under elevated [O3]. Copyright © 2016 Elsevier Ltd. All rights reserved.

Stomatal Conductance, Plant Hydraulics, and Multilayer Canopies: A New Paradigm for Earth System Models or Unnecessary Uncertainty

NASA Astrophysics Data System (ADS)

Bonan, G. B.

2016-12-01

Soil moisture stress is a key regulator of canopy transpiration, the surface energy budget, and land-atmosphere coupling. Many land surface models used in Earth system models have an ad-hoc parameterization of soil moisture stress that decreases stomatal conductance with soil drying. Parameterization of soil moisture stress from more fundamental principles of plant hydrodynamics is a key research frontier for land surface models. While the biophysical and physiological foundations of such parameterizations are well-known, their best implementation in land surface models is less clear. Land surface models utilize a big-leaf canopy parameterization (or two big-leaves to represent the sunlit and shaded canopy) without vertical gradients in the canopy. However, there are strong biometeorological and physiological gradients in plant canopies. Are these gradients necessary to resolve? Here, I describe a vertically-resolved, multilayer canopy model that calculates leaf temperature and energy fluxes, photosynthesis, stomatal conductance, and leaf water potential at each level in the canopy. In this model, midday leaf water stress manifests in the upper canopy layers, which receive high amounts of solar radiation, have high leaf nitrogen and photosynthetic capacity, and have high stomatal conductance and transpiration rates (in the absence of leaf water stress). Lower levels in the canopy become water stressed in response to longer-term soil moisture drying. I examine the role of vertical gradients in the canopy microclimate (solar radiation, air temperature, vapor pressure, wind speed), structure (leaf area density), and physiology (leaf nitrogen, photosynthetic capacity, stomatal conductance) in determining above canopy fluxes and gradients of transpiration and leaf water potential within the canopy.

Frankia and Alnus rubra canopy roots: an assessment of genetic diversity, propagule availability, and effects on soil nitrogen.

PubMed

Kennedy, Peter G; Schouboe, Jesse L; Rogers, Rachel H; Weber, Marjorie G; Nadkarni, Nalini M

2010-02-01

The ecological importance of microbial symbioses in terrestrial soils is widely recognized, but their role in soils that accumulate in forest canopies is almost entirely unknown. To address this gap, this study investigated the Frankia-Alnus rubra symbiosis in canopy and forest floor roots at Olympic National Park, WA, USA. Sixteen mature A. rubra trees were surveyed and Frankia genetic diversity in canopy and forest floor nodules was assessed with sequence-based nifH analyses. A seedling bioassay experiment was conducted to determine Frankia propagule availability in canopy and forest floor soils. Total soil nitrogen from both environments was also quantified. Nodules were present in the canopies of nine of the 16 trees sampled. Across the study area, Frankia canopy and forest floor assemblages were similar, with both habitats containing the same two genotypes. The composition of forest floor and canopy genotypes on the same tree was not always identical, however, suggesting that dispersal was not a strictly local phenomenon. Frankia seedling colonization was similar in canopy soils regardless of the presence of nodules as well as in forest floor soils, indicating that dispersal was not likely to be a major limiting factor. The total soil nitrogen of canopy soils was higher than that of forest floor soils, but the presence of Frankia nodules in canopy soils did not significantly alter soil nitrogen levels. Overall, this study indicates that the Frankia-A. rubra symbiosis is similar in canopy and forest floor environments. Because canopy roots are exposed to different environmental conditions within very small spatial areas and because those areas can be easily manipulated (e.g., fertilizer or watering treatments), they present microbial ecologists with a unique arena to examine root-microbe interactions.

A comparison of methods for determining the cotton field evapotranspiration and its components under mulched drip irrigation conditions: photosynthesis system, sap flow, and eddy covariance

NASA Astrophysics Data System (ADS)

Zhang, Z.; Tian, F.; Hu, H.

2013-12-01

A multi-scale, multi-technique study was conducted to measure evapotranspiration and its components in a cotton field under mulched drip irrigation conditions in northwestern China. Three measurement techniques at different scales were used: photosynthesis system (leaf scale), sap flow (plant scale), and eddy covariance (field scale). The experiment was conducted from July to September 2012. For upscaling the evapotranspiration from the leaf to the plant scale, an approach that incorporated the canopy structure and the relationships between sunlit and shaded leaves was proposed. For upscaling the evapotranspiration from the plant to the field scale, an approach based on the transpiration per unit leaf area was adopted and modified to incorporate the temporal variability in the relationships between the leaf area and the stem diameter. At the plant scale, the estimate of the transpiration based on the photosynthesis system with upscaling is slightly higher (18%) than that obtained by sap flow. At the field scale, the estimate of the transpiration obtained by upscaling the estimate based on sap flow measurements is also systematically higher (10%) compared to that obtained through eddy covariance during the cotton open boll growth stage when soil evaporation can be neglected. Nevertheless, the results derived from these three distinct methods show reasonable consistency at the field scale, which indicates that the upscaling approaches are reasonable and valid. Based on the measurements and the upscaling approaches, the evapotranspiration components were analyzed under mulched drip irrigation. During the cotton flower and bolling stages in July and August, the evapotranspiration are 3.94 and 4.53 mm day-1, respectively. The proportion of transpiration to evapotranspiration reaches 87.1% before drip irrigation and 82.3% after irrigation. The high water use efficiency is principally due to the mulched film above the drip pipe, the low soil water content in the inter-film zone,the well-closed canopy, and the high water requirement of the crop

Constructing a framework for risk analyses of climate change effects on the water budget of differently sloped vineyards with a numeric simulation using the Monte Carlo method coupled to a water balance model

PubMed Central

Hofmann, Marco; Lux, Robert; Schultz, Hans R.

2014-01-01

Grapes for wine production are a highly climate sensitive crop and vineyard water budget is a decisive factor in quality formation. In order to conduct risk assessments for climate change effects in viticulture models are needed which can be applied to complete growing regions. We first modified an existing simplified geometric vineyard model of radiation interception and resulting water use to incorporate numerical Monte Carlo simulations and the physical aspects of radiation interactions between canopy and vineyard slope and azimuth. We then used four regional climate models to assess for possible effects on the water budget of selected vineyard sites up 2100. The model was developed to describe the partitioning of short-wave radiation between grapevine canopy and soil surface, respectively, green cover, necessary to calculate vineyard evapotranspiration. Soil water storage was allocated to two sub reservoirs. The model was adopted for steep slope vineyards based on coordinate transformation and validated against measurements of grapevine sap flow and soil water content determined down to 1.6 m depth at three different sites over 2 years. The results showed good agreement of modeled and observed soil water dynamics of vineyards with large variations in site specific soil water holding capacity (SWC) and viticultural management. Simulated sap flow was in overall good agreement with measured sap flow but site-specific responses of sap flow to potential evapotranspiration were observed. The analyses of climate change impacts on vineyard water budget demonstrated the importance of site-specific assessment due to natural variations in SWC. The improved model was capable of describing seasonal and site-specific dynamics in soil water content and could be used in an amended version to estimate changes in the water budget of entire grape growing areas due to evolving climatic changes. PMID:25540646

Rates of nocturnal transpiration in two evergreen temperate woodland species with differing water-use strategies.

PubMed

Zeppel, Melanie; Tissue, David; Taylor, Daniel; Macinnis-Ng, Catriona; Eamus, Derek

2010-08-01

Nocturnal fluxes may be a significant factor in the annual water budget of forested ecosystems. Here, we assessed sap flow in two co-occurring evergreen species (Eucalyptus parramattensis and Angophora bakeri) in a temperate woodland for 2 years in order to quantify the magnitude of seasonal nocturnal sap flow (E(n)) under different environmental conditions. The two species showed different diurnal water relations, demonstrated by different diurnal curves of stomatal conductance, sap flow and leaf water potential. The relative influence of several microclimatic variables, including wind speed (U), vapour pressure deficit (D), the product of U and D (UD) and soil moisture content, were quantified. D exerted the strongest influence on E(n) (r² = 0.59-0.86), soil moisture content influenced E(n) when D was constant, but U and UD did not generally influence E(n). In both species, cuticular conductance (G(c)) was a small proportion of total leaf conductance (G(s)) and was not a major pathway for E(n). We found that E(n) was primarily a function of transpiration from the canopy rather than refilling of stem storage, with canopy transpiration accounting for 50-70% of nocturnal flows. Mean E(n) was 6-8% of the 24-h flux across seasons (spring, summer and winter), but was up to 19% of the 24-h flux on some days in both species. Despite different daytime strategies in water use of the two species, both species demonstrated low night-time water loss, suggesting similar controls on water loss at night. In order to account for the impact of E(n) on pre-dawn leaf water potential arising from the influence of disequilibria between root zone and leaf water potential, we also developed a simple model to more accurately predict soil water potential (ψ(s)).

Modeling the Soil Water and Energy Balance of a Mixed Grass Rangeland and Evaluating a Soil Water Based Drought Index in Wyoming

NASA Astrophysics Data System (ADS)

Engda, T. A.; Kelleners, T. J.; Paige, G. B.

2013-12-01

Soil water content plays an important role in the complex interaction between terrestrial ecosystems and the atmosphere. Automated soil water content sensing is increasingly being used to assess agricultural drought conditions. A one-dimensional vertical model that calculates incoming solar radiation, canopy energy balance, surface energy balance, snow pack dynamics, soil water flow, snow-soil heat exchange is applied to calculate water flow and heat transport in a Rangeland soil located near Lingel, Wyoming. The model is calibrated and validated using three years of measured soil water content data. Long-term average soil water content dynamics are calculated using a 30 year historical data record. The difference between long-term average soil water content and observed soil water content is compared with plant biomass to evaluate the usefulness of soil water content as a drought indicator. Strong correlation between soil moisture surplus/deficit and plant biomass may prove our hypothesis that soil water content is a good indicator of drought conditions. Soil moisture based drought index is calculated using modeled and measured soil water data input and is compared with measured plant biomass data. A drought index that captures local drought conditions proves the importance of a soil water monitoring network for Wyoming Rangelands to fill the gap between large scale drought indices, which are not detailed enough to assess conditions at local level, and local drought conditions. Results from a combined soil moisture monitoring and computer modeling, and soil water based drought index soil are presented to quantify vertical soil water flow, heat transport, historical soil water variations and drought conditions in the study area.

Seagrass Parameter Affect the Fish Assemblages in Karimunjawa Archipelago

NASA Astrophysics Data System (ADS)

Sri Susilo, Endang; Nugroho Sugianto, Denny; Munasik; Nirwani; Adhi Suryono, Chrisna

2018-02-01

Seagrass beds promote high species diversity, abundance and biomass, and become important habitats for some economically important fishes. Plants of seagrasses result in structurally highly complex habitats and offering feeding grounds, shelter from predation as well as nursery areas for diverse fish assemblages. However, research on fish communities in Southeast Asian seagrass bed is rarely conducted. In the present study fish assemblages in seagrass beds with different parameters (cover, diversity and similarity indices, domination) was investigated in the Karimunjawa Islands, Indonesia. The purpose of this study were to assess whether fish assemblages differ concerning on the abundance and the species number. This study was conducted on the seagrass bed on Karimunjawa Islands in Java Sea, particularly in the water of Menjangan Besar and Menjangan Kecil Island. Line-quadrant transect was used to assess seagrass data, while the occurrence and individual number of fish harboured in the selected seagrass bed was counted by using underwater visual census in the stationary point count transects. Seagrass cover in Menjangan Kecil Island (41%) with various canopy included both upper and lower canopy was considerable higher than those in Menjangan Besar Island (5%). Fish diversity, species composition and abundance are considerably different between the two study sites. This study revealed that seagrass density or cover and canopy structure affected the fish abundance and species number harboured.

Dynamic of Plant Composition and Regeneration following Windthrow in a Temperate Beech Forest

PubMed Central

Mollaei Darabi, Sakineh; Kooch, Yahya; Hosseini, Seyed Mohsen

2014-01-01

The effects of soil pedoturbation (i.e., pit and mound microtopography, PM) on development of herbaceous plant species and woody species regeneration were examined in a temperate beech forest (Fagus orientalis Lipsky) in northern Iran. We recorded the vegetation in 20 pairs of disturbed and adjacent undisturbed plots and established a chronosequence of PM ages to study the effect of time since microsite formation on cover percent of herbaceous plants and woody regeneration status. According to our findings, Carex acutiformis L., Sambucus ebulus L., Brachypodium pinnatum L., and Cyclamen coum L. are found only in the PM microsites, whereas the Equisetum ramosissimum L. is recorded only under closed canopy. The coverage percent of Rubus caesius L. increased in PM microsites compared to closed canopy intensively. In addition, Albizia julibrissin Durazz. is detected in PM microsite, whereas the Acer cappadocicum B. and Prunus persica L. species were recorded only under closed canopy. We found significant differences in understory species diversity between different ages of PM, and disturbed and adjacent undisturbed plots. Our study supports that the PM complex will create a mosaic of environmental conditions. This environmental heterogeneity could be responsible for the diversity of herbaceous plant species and regeneration of woody species. PMID:27379260

Understanding patterns of vegetation structure and distribution across Great Smoky Mountains National Park using LiDAR and meteorology data

NASA Astrophysics Data System (ADS)

Kumar, J.; Hargrove, W. W.; Norman, S. P.; Hoffman, F. M.

2017-12-01

Great Smoky Mountains National Park (GSMNP) in Tennessee is a biodiversity hotspot and home to a large number of plant, animal and bird species. Driven by gradients of climate (ex. temperature, precipitation regimes), topography (ex. elevation, slope, aspect), geology (ex. soil types, textures, depth), hydrology (ex. drainage, moisture availability) etc. GSMNP offers a diverse composition and distribution of vegetation which in turn supports an array of wildlife. Understanding the vegetation canopy structure is critical to understand, monitor and manage the complex forest ecosystems like the Great Smoky Mountain National Park (GSMNP). Vegetation canopies not only help understand the vegetation, but are also a critically important habitat characteristics of many threatened and endangered animal and bird species that GSMNP is home to. Using airborne Light Detection and Ranging (LiDAR) we characterize the three-dimensional structure of the vegetation. LiDAR based analysis gives detailed insight in the canopy structure (overstory and understory) and its spatial variability within and across forest types. Vegetation structure and spatial distribution show strong correlation with climate, topographic, and edaphic variables and our multivariate analysis not just mines rich and large LiDAR data but presents ecological insights and data for vegetation within the park that can be useful to forest managers in their management and conservation efforts.

Vegetation correlates of gibbon density in the peat-swamp forest of the Sabangau catchment, Central Kalimantan, Indonesia.

PubMed

Hamard, Marie; Cheyne, Susan M; Nijman, Vincent

2010-06-01

Understanding the complex relationship between primates and their habitats is essential for effective conservation plans. Peat-swamp forest has recently been recognized as an important habitat for the Southern Bornean gibbon (Hylobates albibarbis), but information is scarce on the factors that link gibbon density to characteristics of this unique ecosystem. Our aims in this study were firstly to estimate gibbon density in different forest subtypes in a newly protected, secondary peat-swamp forest in the Sabangau Catchment, Indonesia, and secondly to identify which vegetation characteristics correlate with gibbon density. Data collection was conducted in a 37.1 km(2) area, using auditory sampling methods and vegetation "speed plotting". Gibbon densities varied between survey sites from 1.39 to 3.92 groups/km(2). Canopy cover, tree height, density of large trees and food availability were significantly correlated with gibbon density, identifying the preservation of tall trees and good canopy cover as a conservation priority for the gibbon population in the Sabangau forest. This survey indicates that selective logging, which specifically targets large trees and disrupts canopy cover, is likely to have adverse effects on gibbon populations in peat-swamp forests, and calls for greater protection of these little-studied ecosystems. (c) 2010 Wiley-Liss, Inc.

Leaf Area Index (LAI) in different type of agroforestry systems based on hemispherical photographs in Cidanau Watershed

NASA Astrophysics Data System (ADS)

Nur Khairiah, Rahmi; Setiawan, Yudi; Budi Prasetyo, Lilik; Ayu Permatasari, Prita

2017-01-01

Ecological functions of agroforestry systems have perceived benefit to people around Cidanau Watershed, especially in the protection of water quality. The main causes of the problems encountered in the Cidanau Watershed are associated with the human factors, especially encroachment and conversion of forest into farmland. The encroachment has made most forest in Cidanau Watershed become bare land. To preserve the ecological function of agroforestry systems in Cidanau Watershed, monitoring of the condition of the vegetation canopy in agroforestry systems is really needed. High intensity thinning of crown density due to deforestation can change stand leaf area index dramatically. By knowing LAI, we can assess the condition of the vegetation canopy in agroforestry systems. LAI in this research was obtained from Hemispherical Photographs analysis using the threshold method in HemiView Canopy Analysis Software. Our research results indicate that there are six types of agroforestry in Cidanau Watershed i.e. Sengon Agroforestry, Clove Agroforestry, Melinjo Agroforestry, Chocolate Agroforestry, Coffee Agroforestry, and Complex Agroforestry. Several factors potentially contribute to variations in the value of LAI in different types of agroforestry. The simple assumptions about differences ranges of LAI values on six types of agroforestry is closely related to leaf area and plant population density.

Short-term gas dispersion in idealised urban canopy in street parallel with flow direction

NASA Astrophysics Data System (ADS)

Chaloupecká, Hana; Jaňour, Zbyněk; Nosek, Štěpán

2016-03-01

Chemical attacks (e.g. Syria 2014-15 chlorine, 2013 sarine or Iraq 2006-7 chlorine) as well as chemical plant disasters (e.g. Spain 2015 nitric oxide, ferric chloride; Texas 2014 methyl mercaptan) threaten mankind. In these crisis situations, gas clouds are released. Dispersion of gas clouds is the issue of interest investigated in this paper. The paper describes wind tunnel experiments of dispersion from ground level point gas source. The source is situated in a model of an idealised urban canopy. The short duration releases of passive contaminant ethane are created by an electromagnetic valve. The gas cloud concentrations are measured in individual places at the height of the human breathing zone within a street parallel with flow direction by Fast-response Ionisation Detector. The simulations of the gas release for each measurement position are repeated many times under the same experimental set up to obtain representative datasets. These datasets are analysed to compute puff characteristics (arrival, leaving time and duration). The results indicate that the mean value of the dimensionless arrival time can be described as a growing linear function of the dimensionless coordinate in the street parallel with flow direction where the gas source is situated. The same might be stated about the dimensionless leaving time as well as the dimensionless duration, however these fits are worse. Utilising a linear function, we might also estimate some other statistical characteristics from datasets than the datasets means (medians, trimeans). The datasets of the dimensionless arrival time, the dimensionless leaving time and the dimensionless duration can be fitted by the generalized extreme value distribution (GEV) in all sampling positions except one.

REY-Th-U Solute Dynamics in the Critical Zone: Combined Influence of Chemical Weathering, Atmospheric Deposit Leaching, and Vegetation Cycling (Mule Hole Watershed, South India)

NASA Astrophysics Data System (ADS)

Braun, Jean-Jacques; Riotte, Jean; Battacharya, Shrema; Violette, Aurélie; Prunier, Jonathan; Bouvier, Vincent; Candaudap, Frédéric; Maréchal, Jean-Christophe; Ruiz, Laurent; Panda, Smruthi Rekha; Subramanian, S.

2017-12-01

The source and proportion of REY, Th, and U exported by groundwater and by the ephemeral stream along with the elemental proportions passing through vegetation have been assessed in the subhumid tropical forested CZO of Mule Hole, Southern India. The study relies on a pluriannual hydrogeochemical monitoring combined with a hydrological model. The significant difference between the soil input (SI) and output (SO) solute fluxes (mmol/km2/yr) of LREE (SI-SO = 13,250-1,500), HREE (1,930-235), Th (64-12), and U (63-25) indicates a strong uptake by roots carried by canopy and forest floor processes. The contribution of atmospheric dust leaching can reach about 60% of LREE and 80% of HREE. At the watershed scale, the U solute flux exported by groundwater (180 mmol/km2/yr) mainly originates from the breakdown of primary U-bearing accessory minerals and dominates by a factor of 25 the stream flux. The precipitation of authigenic U-bearing phases and adsorption onto Fe-oxides and oxyhydroxides play a significant role for limiting the U mobility. In the groundwater, the plagioclase chemical weathering is efficiently traced by the positive Eu-anomaly. The very low (REY) to nil (Th) contents are explained by the precipitation of authigenic phases. In the stream flow, dominated by the overland flow (87% of the yearly stream flow), the solute exports (in mmol/km2/yr) of REY (1,080 for LREE and 160 for HREE) and of Th (14) dominate those by groundwater. Their mobility is enhanced by chelation with organic ligands produced by forest floor and canopy processes.