Induction of L-phenylalanine ammonia-lyase during utilization of phenylalanine as a carbon or nitrogen source in Rhodotorula glutinis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marusich, W.C.; Jensen, R.A.; Zamir, L.O.

Rhodotorula glutinis is a convenient source of L-phenylalanine ammonia-lyase, an enzyme that is useful as a biochemical reagent in the assay of L-phenylalanine. There have been previous descriptions of induced lyase production in complex medium where induction occurs late in exponential growth, suggesting a role in secondary metabolism such as is the case in higher plants. A higher specific activity of L-phenylalanine ammonia-lyase (sixfold higher than in complex medium) can be obtained during midexponential growth in a defined medium containing L-phenylalanine as the sole source of carbon. L-phenylalanine will also induce lyase synthesis during exponential growth in minimal medium inmore » which L-phenylalanine is the sole source of nitrogen. The appearance of lyase in complex medium supplemented with L-phenylalanine is probably triggered fortuitously by exhaustion late in growth of a prime source of nitrogen. In this study, R. glutinis appeared to express a single lyase enzyme, regardless of whether induction was nitrogen signaled or carbon signaled. Thin-layer chromatographic analysis of ether extracts prepared fom cultures induced with doubly labeled (U-/sup 14/C; ring-4-/sup 3/H) L-phenylalanine provided evidence of a catabolic sequence containing cinnamic acid, benzoic acid, and 4-hydroxybenzoic acid as degradative intermediates. 3,4-Dihydroxybenzoic acid was not identified as a catabolic intermediate.« less

Induction of L-phenylalanine ammonia-lyase during utilization of phenylalanine as a carbon or nitrogen source in Rhodotorula glutinis.

PubMed Central

Marusich, W C; Jensen, R A; Zamir, L O

1981-01-01

Rhodotorula glutinis is a convenient source of L-phenylalanine ammonia-lyase, an enzyme that is useful as a biochemical reagent in the assay of L-phenylalanine. There have been previous descriptions of induced lyase production in complex medium where induction occurs late in exponential growth, suggesting a role in secondary metabolism such as is the case in higher plants. A higher specific activity of L-phenylalanine ammonia-lyase (sixfold higher than a complex medium) can be obtained during midexponential growth in a defined medium containing L-phenylalanine as the sole source of carbon. L-Phenylalanine will also induce lyase synthesis during exponential growth in minimal in which L-phenylalanine is the sole source of nitrogen. The appearance of lyase in complex medium supplemented with L-phenylalanine is probably triggered fortuitously by exhaustion late in growth of a prime source of nitrogen. In this study, R. glutinis appeared to express a single lyase enzyme, regardless of whether induction was nitrogen signaled or carbon signaled. Thin-layer chromatographic analysis of ether extracts prepared from cultures induced with doubly labeled (U-14C; ring-4-3H) L-phenylalanine provided evidence of a catabolic sequence containing cinnamic acid, benzoic acid, and 4-hydroxybenzoic acid as degradative intermediates. 3,4-Dihydroxybenzoic acid was not identified as a catabolic intermediate. PMID:7195398

TEMPERATURE SENSITIVITY OF SOIL RESPIRATION AND ITS EFFECTS ON ECOSYSTEM CARBON BUDGET: NONLINEARITY BEGETS SURPRISES. (R827676)

EPA Science Inventory

Nonlinearity is a salient feature in all complex systems, and it certainly characterizes biogeochemical cycles in ecosystems across a wide range of scales. Soil carbon emission is a major source of uncertainty in estimating the terrestrial carbon budget at the ecosystem level ...

New PHA products using unrelated carbon sources

PubMed Central

Matias, Fernanda; de Andrade Rodrigues, Maria Filomena

2011-01-01

Polyhydroxyalkanoates (PHA) are natural polyesters stored by a wide range of bacteria as carbon source reserve. Due to its chemical characteristics and biodegradability PHA can be used in chemical, medical and pharmaceutical industry for many human purposes. Over the past years, few Burkholderia species have become known for production of PHA. Aside from that, these bacteria seem to be interesting for discovering new PHA compositions which is important to different industrial applications. In this paper, we introduce two new strains which belong either to Burkholderia cepacia complex (Bcc) or genomovar-type, Burkholderia cepacia SA3J and Burkholderia contaminans I29B, both PHA producers from unrelated carbon sources. The classification was based on 16S rDNA and recA partial sequence genes and cell wall fatty acids composition. These two strains were capable to produce different types of PHA monomers or precursors. Unrelated carbon sources were used for growth and PHA accumulation. The amount of carbon source evaluated, or mixtures of them, was increased with every new experiment until it reaches eighteen carbon sources. As first bioprospection experiments staining methods were used with colony fluorescent dye Nile Red and the cell fluorescent dye Nile Blue A. Gas chromatography analysis coupled to mass spectrometry was used to evaluate the PHA composition on each strain cultivated on different carbon sources. The synthesized polymers were composed by short chain length-PHA (scl-PHA), especially polyhydroxybutyrate, and medium chain length-PHA (mcl-PHA) depending on the carbon source used. PMID:24031764

Four-electron deoxygenative reductive coupling of carbon monoxide at a single metal site

NASA Astrophysics Data System (ADS)

Buss, Joshua A.; Agapie, Theodor

2016-01-01

Carbon dioxide is the ultimate source of the fossil fuels that are both central to modern life and problematic: their use increases atmospheric levels of greenhouse gases, and their availability is geopolitically constrained. Using carbon dioxide as a feedstock to produce synthetic fuels might, in principle, alleviate these concerns. Although many homogeneous and heterogeneous catalysts convert carbon dioxide to carbon monoxide, further deoxygenative coupling of carbon monoxide to generate useful multicarbon products is challenging. Molybdenum and vanadium nitrogenases are capable of converting carbon monoxide into hydrocarbons under mild conditions, using discrete electron and proton sources. Electrocatalytic reduction of carbon monoxide on copper catalysts also uses a combination of electrons and protons, while the industrial Fischer-Tropsch process uses dihydrogen as a combined source of electrons and electrophiles for carbon monoxide coupling at high temperatures and pressures. However, these enzymatic and heterogeneous systems are difficult to probe mechanistically. Molecular catalysts have been studied extensively to investigate the elementary steps by which carbon monoxide is deoxygenated and coupled, but a single metal site that can efficiently induce the required scission of carbon-oxygen bonds and generate carbon-carbon bonds has not yet been documented. Here we describe a molybdenum compound, supported by a terphenyl-diphosphine ligand, that activates and cleaves the strong carbon-oxygen bond of carbon monoxide, enacts carbon-carbon coupling, and spontaneously dissociates the resulting fragment. This complex four-electron transformation is enabled by the terphenyl-diphosphine ligand, which acts as an electron reservoir and exhibits the coordinative flexibility needed to stabilize the different intermediates involved in the overall reaction sequence. We anticipate that these design elements might help in the development of efficient catalysts for converting carbon monoxide to chemical fuels, and should prove useful in the broader context of performing complex multi-electron transformations at a single metal site.

Biodegradation of Metal-EDTA Complexes by an Enriched Microbial Population

PubMed Central

Thomas, Russell A. P.; Lawlor, Kirsten; Bailey, Mark; Macaskie, Lynne E.

1998-01-01

A mixed culture utilizing EDTA as the sole carbon source was isolated from a mixed inoculum of water from the River Mersey (United Kingdom) and sludge from an industrial effluent treatment plant. Fourteen component organisms were isolated from the culture, including representatives of the genera Methylobacterium, Variovorax, Enterobacter, Aureobacterium, and Bacillus. The mixed culture biodegraded metal-EDTA complexes slowly; the biodegradability was in the order Fe>Cu>Co>Ni>Cd. By incorporation of inorganic phosphate into the medium as a precipitant ligand, heavy metals were removed in parallel to EDTA degradation. The mixed culture also utilized a number of possible EDTA degradation intermediates as carbon sources. PMID:9546167

CASSIA--a dynamic model for predicting intra-annual sink demand and interannual growth variation in Scots pine.

PubMed

Schiestl-Aalto, Pauliina; Kulmala, Liisa; Mäkinen, Harri; Nikinmaa, Eero; Mäkelä, Annikki

2015-04-01

The control of tree growth vs environment by carbon sources or sinks remains unresolved although it is widely studied. This study investigates growth of tree components and carbon sink-source dynamics at different temporal scales. We constructed a dynamic growth model 'carbon allocation sink source interaction' (CASSIA) that calculates tree-level carbon balance from photosynthesis, respiration, phenology and temperature-driven potential structural growth of tree organs and dynamics of stored nonstructural carbon (NSC) and their modifying influence on growth. With the model, we tested hypotheses that sink demand explains the intra-annual growth dynamics of the meristems, and that the source supply is further needed to explain year-to-year growth variation. The predicted intra-annual dimensional growth of shoots and needles and the number of cells in xylogenesis phases corresponded with measurements, whereas NSC hardly limited the growth, supporting the first hypothesis. Delayed GPP influence on potential growth was necessary for simulating the yearly growth variation, indicating also at least an indirect source limitation. CASSIA combines seasonal growth and carbon balance dynamics with long-term source dynamics affecting growth and thus provides a first step to understanding the complex processes regulating intra- and interannual growth and sink-source dynamics. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Within-storm and Seasonal Differences in Particulate Organic Material Composition and Sources in White Clay Creek, USA

NASA Astrophysics Data System (ADS)

Karwan, D. L.; Aufdenkampe, A. K.; Aalto, R. E.; Newbold, J. D.; Pizzuto, J. E.

2011-12-01

The material exported from a watershed reflects its origin and the processes it undergoes during downhill and downstream transport. Due to its nature as a complex mixture of material, the composition of POM integrates the physical, biological, and chemical processes effecting watershed material. In this study, we integrate sediment fingerprint analyses common in geomorphological studies of mineral suspended particulate material (SPM) with biological and ecological characterizations of particulate organic carbon (POC). Through this combination, we produce quantifiable budgets of particulate organic carbon and mineral material, as well as integrate our calculations of carbon and mineral cycling in a complex, human-influenced watershed. More specifically, we quantify the composition and sources of POM in the third-order White Clay Creek Watershed, and examine the differences in composition and source with hydrologic variations produced by storms and seasonality. POM and watershed sources have been analyzed for particle size, mineral surface area, total mineral elemental composition, fallout radioisotope activity for common erosion tracers (7Be, 210Pb, 137Cs), and organic carbon and nitrogen content with stable isotope (13C, 15N) abundance. Results indicate a difference in POM source with season as well as within individual storms. Beryllium-7 activity, an indicator of landscape surface erosion, nearly triples within a single spring storm, from 389 mBq/g on the rising limb and 1190 mBq/g at the storm hydrograph peak. Fall storms have even lower 7Be concentrations, below 100 mBq/g. Furthermore, weight-percent of organic carbon nearly doubles from 4 - 5% during spring storms to over 8% during fall storms, with smaller variation occurring within individual storms. Despite changes in percent organic carbon, organic carbon to mineral surface area ratios and carbon to nitrogen molar ratios remain similar within storms and across seasons.

The Bern Simple Climate Model (BernSCM) v1.0: an extensible and fully documented open-source re-implementation of the Bern reduced-form model for global carbon cycle-climate simulations

NASA Astrophysics Data System (ADS)

Strassmann, Kuno M.; Joos, Fortunat

2018-05-01

The Bern Simple Climate Model (BernSCM) is a free open-source re-implementation of a reduced-form carbon cycle-climate model which has been used widely in previous scientific work and IPCC assessments. BernSCM represents the carbon cycle and climate system with a small set of equations for the heat and carbon budget, the parametrization of major nonlinearities, and the substitution of complex component systems with impulse response functions (IRFs). The IRF approach allows cost-efficient yet accurate substitution of detailed parent models of climate system components with near-linear behavior. Illustrative simulations of scenarios from previous multimodel studies show that BernSCM is broadly representative of the range of the climate-carbon cycle response simulated by more complex and detailed models. Model code (in Fortran) was written from scratch with transparency and extensibility in mind, and is provided open source. BernSCM makes scientifically sound carbon cycle-climate modeling available for many applications. Supporting up to decadal time steps with high accuracy, it is suitable for studies with high computational load and for coupling with integrated assessment models (IAMs), for example. Further applications include climate risk assessment in a business, public, or educational context and the estimation of CO2 and climate benefits of emission mitigation options.

The Aspergillus nidulans Pyruvate Dehydrogenase Kinases Are Essential To Integrate Carbon Source Metabolism.

PubMed

Ries, Laure Nicolas Annick; de Assis, Leandro José; Rodrigues, Fernando José Santos; Caldana, Camila; Rocha, Marina Campos; Malavazi, Iran; Bayram, Özgür; Goldman, Gustavo H

2018-05-24

The pyruvate dehydrogenase complex (PDH), that converts pyruvate to acetyl-coA, is regulated by pyruvate dehydrogenase kinases (PDHK) and phosphatases (PDHP) that have been shown to be important for morphology, pathogenicity and carbon source utilisation in different fungal species. The aim of this study was to investigate the role played by the three PDHKs PkpA, PkpB and PkpC in carbon source utilisation in the reference filamentous fungus Aspergillus nidulans , in order to unravel regulatory mechanisms which could prove useful for fungal biotechnological and biomedical applications. PkpA and PkpB were shown to be mitochondrial whereas PkpC localised to the mitochondria in a carbon source-dependent manner. Only PkpA was shown to regulate PDH activity. In the presence of glucose, deletion of pkpA and pkpC resulted in reduced glucose utilisation, which affected carbon catabolite repression (CCR) and hydrolytic enzyme secretion, due to de-regulated glycolysis and TCA cycle enzyme activities. Furthermore, PkpC was shown to be required for the correct metabolic utilisation of cellulose and acetate. PkpC negatively regulated the activity of the glyoxylate cycle enzyme isocitrate lyase (ICL), required for acetate metabolism. In summary, this study identified PDHKs important for the regulation of central carbon metabolism in the presence of different carbon sources, with effects on the secretion of biotechnologically important enzymes and carbon source-related growth. This work demonstrates how central carbon metabolism can affect a variety of fungal traits and lays a basis for further investigation into these characteristics with potential interest for different applications. Copyright © 2018, G3: Genes, Genomes, Genetics.

One ligand, two regulators and three binding sites: How KDPG controls primary carbon metabolism in Pseudomonas

PubMed Central

Fung, Rowena K. Y.; Grenga, Lucia; Trampari, Eleftheria; Pepe, Simona

2017-01-01

Effective regulation of primary carbon metabolism is critically important for bacteria to successfully adapt to different environments. We have identified an uncharacterised transcriptional regulator; RccR, that controls this process in response to carbon source availability. Disruption of rccR in the plant-associated microbe Pseudomonas fluorescens inhibits growth in defined media, and compromises its ability to colonise the wheat rhizosphere. Structurally, RccR is almost identical to the Entner-Doudoroff (ED) pathway regulator HexR, and both proteins are controlled by the same ED-intermediate; 2-keto-3-deoxy-6-phosphogluconate (KDPG). Despite these similarities, HexR and RccR control entirely different aspects of primary metabolism, with RccR regulating pyruvate metabolism (aceEF), the glyoxylate shunt (aceA, glcB, pntAA) and gluconeogenesis (pckA, gap). RccR displays complex and unusual regulatory behaviour; switching repression between the pyruvate metabolism and glyoxylate shunt/gluconeogenesis loci depending on the available carbon source. This regulatory complexity is enabled by two distinct pseudo-palindromic binding sites, differing only in the length of their linker regions, with KDPG binding increasing affinity for the 28 bp aceA binding site but decreasing affinity for the 15 bp aceE site. Thus, RccR is able to simultaneously suppress and activate gene expression in response to carbon source availability. Together, the RccR and HexR regulators enable the rapid coordination of multiple aspects of primary carbon metabolism, in response to levels of a single key intermediate. PMID:28658302

Heterologous production of an energy-conserving carbon monoxide dehydrogenase complex in the hyperthermophile Pyrococcus furiosus

DOE PAGES

Schut, Gerrit J.; Lipscomb, Gina L.; Nguyen, Diep M. N.; ...

2016-01-29

In this study, carbon monoxide (CO) is an important intermediate in anaerobic carbon fixation pathways in acetogenesis and methanogenesis. In addition, some anaerobes can utilize CO as an energy source. In the hyperthermophilic archaeon Thermococcus onnurineus, which grows optimally at 80°C, CO oxidation and energy conservation is accomplished by a respiratory complex encoded by a 16-gene cluster containing a CO dehydrogenase, a membrane-bound [NiFe]-hydrogenase and a Na +/H + antiporter module. This complex oxidizes CO, evolves CO 2 and H 2, and generates a Na+ motive force that is used to conserve energy by a Na+-dependent ATP synthase. Herein wemore » used a bacterial artificial chromosome to insert the 13.2 kb gene cluster encoding the CO-oxidizing respiratory complex of T. onnurineus into the genome of the heterotrophic archaeon, Pyrococcus furiosus, which grows optimally at 100° C. P. furiosus is normally unable to utilize CO, however, the recombinant strain readily oxidized CO and generated H 2 at 80° C. Moreover, CO also served as an energy source and allowed the P. furiosus strain to grow with a limiting concentration of sugar or with peptides as the carbon source. Moreover, CO oxidation by P. furiosus was also coupled to the re-utilization, presumably for biosynthesis, of acetate generated by fermentation. The functional transfer of CO utilization between Thermococcus and Pyrococcus species demonstrated herein is representative of the horizontal gene transfer of an environmentally relevant metabolic capability. The transfer of CO utilizing, hydrogen-producing genetic modules also has applications for biohydrogen production and a CO-based industrial platform for various thermophilic organisms.« less

Beaver-mediated lateral hydrologic connectivity, fluvial carbon and nutrient flux, and aquatic ecosystem metabolism

NASA Astrophysics Data System (ADS)

Wegener, Pam; Covino, Tim; Wohl, Ellen

2017-06-01

River networks that drain mountain landscapes alternate between narrow and wide valley segments. Within the wide segments, beaver activity can facilitate the development and maintenance of complex, multithread planform. Because the narrow segments have limited ability to retain water, carbon, and nutrients, the wide, multithread segments are likely important locations of retention. We evaluated hydrologic dynamics, nutrient flux, and aquatic ecosystem metabolism along two adjacent segments of a river network in the Rocky Mountains, Colorado: (1) a wide, multithread segment with beaver activity; and, (2) an adjacent (directly upstream) narrow, single-thread segment without beaver activity. We used a mass balance approach to determine the water, carbon, and nutrient source-sink behavior of each river segment across a range of flows. While the single-thread segment was consistently a source of water, carbon, and nitrogen, the beaver impacted multithread segment exhibited variable source-sink dynamics as a function of flow. Specifically, the multithread segment was a sink for water, carbon, and nutrients during high flows, and subsequently became a source as flows decreased. Shifts in river-floodplain hydrologic connectivity across flows related to higher and more variable aquatic ecosystem metabolism rates along the multithread relative to the single-thread segment. Our data suggest that beaver activity in wide valleys can create a physically complex hydrologic environment that can enhance hydrologic and biogeochemical buffering, and promote high rates of aquatic ecosystem metabolism. Given the widespread removal of beaver, determining the cumulative effects of these changes is a critical next step in restoring function in altered river networks.

Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization

PubMed Central

Benoit, Isabelle; Zhou, Miaomiao; Vivas Duarte, Alexandra; Downes, Damien J.; Todd, Richard B.; Kloezen, Wendy; Post, Harm; Heck, Albert J. R.; Maarten Altelaar, A. F.; de Vries, Ronald P.

2015-01-01

Degradation of plant biomass to fermentable sugars is of critical importance for the use of plant materials for biofuels. Filamentous fungi are ubiquitous organisms and major plant biomass degraders. Single colonies of some fungal species can colonize massive areas as large as five soccer stadia. During growth, the mycelium encounters heterogeneous carbon sources. Here we assessed whether substrate heterogeneity is a major determinant of spatial gene expression in colonies of Aspergillus niger. We analyzed whole-genome gene expression in five concentric zones of 5-day-old colonies utilizing sugar beet pulp as a complex carbon source. Growth, protein production and secretion occurred throughout the colony. Genes involved in carbon catabolism were expressed uniformly from the centre to the periphery whereas genes encoding plant biomass degrading enzymes and nitrate utilization were expressed differentially across the colony. A combined adaptive response of carbon-catabolism and enzyme production to locally available monosaccharides was observed. Finally, our results demonstrate that A. niger employs different enzymatic tools to adapt its metabolism as it colonizes complex environments. PMID:26314379

Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization.

PubMed

Benoit, Isabelle; Zhou, Miaomiao; Vivas Duarte, Alexandra; Downes, Damien J; Todd, Richard B; Kloezen, Wendy; Post, Harm; Heck, Albert J R; Maarten Altelaar, A F; de Vries, Ronald P

2015-08-28

Degradation of plant biomass to fermentable sugars is of critical importance for the use of plant materials for biofuels. Filamentous fungi are ubiquitous organisms and major plant biomass degraders. Single colonies of some fungal species can colonize massive areas as large as five soccer stadia. During growth, the mycelium encounters heterogeneous carbon sources. Here we assessed whether substrate heterogeneity is a major determinant of spatial gene expression in colonies of Aspergillus niger. We analyzed whole-genome gene expression in five concentric zones of 5-day-old colonies utilizing sugar beet pulp as a complex carbon source. Growth, protein production and secretion occurred throughout the colony. Genes involved in carbon catabolism were expressed uniformly from the centre to the periphery whereas genes encoding plant biomass degrading enzymes and nitrate utilization were expressed differentially across the colony. A combined adaptive response of carbon-catabolism and enzyme production to locally available monosaccharides was observed. Finally, our results demonstrate that A. niger employs different enzymatic tools to adapt its metabolism as it colonizes complex environments.

Thermogenic methane release as a cause for the long duration of the PETM

PubMed Central

Frieling, Joost; Svensen, Henrik H.; Planke, Sverre; Cramwinckel, Margot J.; Selnes, Haavard; Sluijs, Appy

2016-01-01

The Paleocene–Eocene Thermal Maximum (PETM) (∼56 Ma) was a ∼170,000-y (∼170-kyr) period of global warming associated with rapid and massive injections of 13C-depleted carbon into the ocean–atmosphere system, reflected in sedimentary components as a negative carbon isotope excursion (CIE). Carbon cycle modeling has indicated that the shape and magnitude of this CIE are generally explained by a large and rapid initial pulse, followed by ∼50 kyr of 13C-depleted carbon injection. Suggested sources include submarine methane hydrates, terrigenous organic matter, and thermogenic methane and CO2 from hydrothermal vent complexes. Here, we test for the contribution of carbon release associated with volcanic intrusions in the North Atlantic Igneous Province. We use dinoflagellate cyst and stable carbon isotope stratigraphy to date the active phase of a hydrothermal vent system and find it to postdate massive carbon release at the onset of the PETM. Crucially, however, it correlates to the period within the PETM of longer-term 13C-depleted carbon release. This finding represents actual proof of PETM carbon release from a particular reservoir. Based on carbon cycle box model [i.e., Long-Term Ocean–Atmosphere–Sediment Carbon Cycle Reservoir (LOSCAR) model] experiments, we show that 4–12 pulses of carbon input from vent systems over 60 kyr with a total mass of 1,500 Pg of C, consistent with the vent literature, match the shape of the CIE and pattern of deep ocean carbonate dissolution as recorded in sediment records. We therefore conclude that CH4 from the Norwegian Sea vent complexes was likely the main source of carbon during the PETM, following its dramatic onset. PMID:27790990

Emissions of SO2, NOx, and CO2 from the Houston Ship Channel Measured by the NOAA WP-3

NASA Astrophysics Data System (ADS)

Washenfelder, R. A.; Brock, C. A.; Frost, G. J.; Holloway, J. S.; Peischl, J. W.; Ryerson, T. B.; Trainer, M.; Fehsenfeld, F. C.

2007-12-01

The Port of Houston is made up of the Houston Ship Channel and Galveston Bay. Together these comprise a 25- mile long complex of diversified public and private facilities, including a petrochemical complex that is among the largest in the world. The Houston Ship Channel is a major source of industrial pollution, emitting sulfur dioxide (SO2), nitrogen oxides (NOx), carbon monoxide (CO), carbon dioxide (CO2), and volatile organic compounds (VOC). Unlike a single large power plant, the Houston Ship Channel consists of numerous sources that can be difficult to quantify in inventories. In order to evaluate and predict air quality in the Houston area, it is important to understand the magnitude and variability of sources in the Houston Ship Channel, and how these sources are evolving over time. We examine fluxes of SO2, NOx, and CO2 from the Houston Ship Channel observed onboard the NOAA WP-3 during September - October 2006. We report the magnitude of these sources, and compare these results to aircraft measurements from 2000 to identify trends.

The influence of different nitrogen and carbon sources on mycotoxin production in Alternaria alternata.

PubMed

Brzonkalik, Katrin; Herrling, Tanja; Syldatk, Christoph; Neumann, Anke

2011-05-27

The aim of this study was to determine the influence of different carbon and nitrogen sources on the production of the mycotoxins alternariol (AOH), alternariol monomethyl ether (AME) and tenuazonic acid (TA) by Alternaria alternata at 28°C using a semi-synthetic medium (modified Czapek-Dox broth) supplemented with nitrogen and carbon sources. Additionally the effect of shaken and static cultivation on mycotoxin production was tested. Initial experiments showed a clear dependency between nitrogen depletion and mycotoxin production. To assess whether nitrogen limitation in general or the type of nitrogen source triggers the production, various nitrogen sources including several ammonium/nitrate salts and amino acids were tested. In static culture the production of AOH/AME can be enhanced greatly with phenylalanine whereas some nitrogen sources seem to inhibit the AOH/AME production completely. TA was not significantly affected by the choice of nitrogen source. In shaken culture the overall production of all mycotoxins was lower compared to static cultivation. Furthermore tests with a wide variety of carbon sources including monosaccharides, disaccharides, complex saccharides such as starch as well as glycerol and acetate were performed. In shaken culture AOH was produced when glucose, fructose, sucrose, acetate or mixtures of glucose/sucrose and glucose/acetate were used as carbon sources. AME production was not detected. The use of sodium acetate resulted in the highest AOH production. In static culture AOH production was also stimulated by acetate and the amount is comparable to shaken conditions. Under static conditions production of AOH was lower except when cultivated with acetate. In static cultivation 9 of 14 tested carbon sources induced mycotoxin production compared to 4 in shaken culture. This is the first study which analyses the influence of carbon and nitrogen sources in a semi-synthetic medium and assesses the effects of culture conditions on mycotoxin production by A. alternata. Copyright © 2011 Elsevier B.V. All rights reserved.

Chabazite and dolomite formation in a dolocrete profile: An example of a complex alkaline paragenesis in Lanzarote, Canary Islands

NASA Astrophysics Data System (ADS)

Alonso-Zarza, Ana M.; Bustamante, Leticia; Huerta, Pedro; Rodríguez-Berriguete, Álvaro; Huertas, María José

2016-05-01

This paper studies the weathering and soil formation processes operating on detrital sediments containing alkaline volcanic rock fragments of the Mirador del Río dolocrete profile. The profile consists of a lower horizon of removilised weathered basalts, an intermediate red sandy mudstones horizon with irregular carbonate layers and a topmost horizon of amalgamated carbonate layers with root traces. Formation occurred in arid to semiarid climates, giving place to a complex mineralogical association, including Mg-carbonates and chabazite, rarely described in cal/dolocretes profiles. Initial vadose weathering processes occurred in the basalts and in directly overlying detrital sediments, producing (Stage 1) red-smectites and dolomicrite. Dominant phreatic (Stage 2) conditions allowed precipitation of coarse-zoned dolomite and chabazite filling porosities. In Stages 3 and 4, mostly pedogenic, biogenic processes played an important role in dolomite and calcite accumulation in the profile. Overall evolution of the profile and its mineralogical association involved initial processes dominated by alteration of host rock, to provide silica and Mg-rich alkaline waters, suitable for chabazite and dolomite formation, without a previous carbonate phase. Dolomite formed both abiogenically and biogenically, but without a previous carbonate precursor and in the absence of evaporites. Dominance of calcite towards the profile top is the result of Mg/Ca decrease in the interstitial meteoric waters due to decreased supply of Mg from weathering, and increased supply of Ca in aeolian dust. Meteoric origin of the water is confirmed by C and O isotope values, which also indicate lack of deep sourced CO2. The dolocrete studied and its complex mineral association reveal the complex interactions that occur at surface during weathering and pedogenesis of basalt-sourced rocks.

Carbon source-dependent efficacy of anaerobic soil disinfestation (ASD) in suppression of Rhizoctonia root rot of apple

USDA-ARS?s Scientific Manuscript database

Rhizoctonia solani AG-5 is a significant component of the pathogen complex that incites apple replant disease (ARD). A non-fumigant alternative, such as ASD, is highly desired for control of ARD. We examined the influence of carbon input as a determinant of ASD efficacy in the supression of apple ...

Regulation of Nitrogen Metabolism by GATA Zinc Finger Transcription Factors in Yarrowia lipolytica

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pomraning, Kyle R.; Bredeweg, Erin L.; Baker, Scott E.

ABSTRACT Fungi accumulate lipids in a manner dependent on the quantity and quality of the nitrogen source on which they are growing. In the oleaginous yeastYarrowia lipolytica, growth on a complex source of nitrogen enables rapid growth and limited accumulation of neutral lipids, while growth on a simple nitrogen source promotes lipid accumulation in large lipid droplets. Here we examined the roles of nitrogen catabolite repression and its regulation by GATA zinc finger transcription factors on lipid metabolism inY. lipolytica. Deletion of the GATA transcription factor genesgzf3andgzf2resulted in nitrogen source-specific growth defects and greater accumulation of lipids when the cells weremore » growing on a simple nitrogen source. Deletion ofgzf1, which is most similar to activators of genes repressed by nitrogen catabolite repression in filamentous ascomycetes, did not affect growth on the nitrogen sources tested. We examined gene expression of wild-type and GATA transcription factor mutants on simple and complex nitrogen sources and found that expression of enzymes involved in malate metabolism, beta-oxidation, and ammonia utilization are strongly upregulated on a simple nitrogen source. Deletion ofgzf3results in overexpression of genes with GATAA sites in their promoters, suggesting that it acts as a repressor, whilegzf2is required for expression of ammonia utilization genes but does not grossly affect the transcription level of genes predicted to be controlled by nitrogen catabolite repression. Both GATA transcription factor mutants exhibit decreased expression of genes controlled by carbon catabolite repression via the repressormig1, including genes for beta-oxidation, highlighting the complex interplay between regulation of carbon, nitrogen, and lipid metabolism. IMPORTANCENitrogen source is commonly used to control lipid production in industrial fungi. Here we identified regulators of nitrogen catabolite repression in the oleaginous yeastY. lipolyticato determine how the nitrogen source regulates lipid metabolism. We show that disruption of both activators and repressors of nitrogen catabolite repression leads to increased lipid accumulation via activation of carbon catabolite repression through an as yet uncharacterized method.« less

Microbial production of rhamnolipids using sugars as carbon sources.

PubMed

Tan, Yun Nian; Li, Qingxin

2018-06-08

Rhamnolipids are a class of biosurfactants with effective surface-active properties. The high cost of microbial production of rhamnolipids largely affects their commercial applications. To reduce the production post, research has been carried out in screening more powerful strains, engineering microbes with higher biosurfactant yields and exploring cheaper substrates to reduce the production cost. Extensive refining is required for biosurfactant production using oils and oil-containing wastes, necessitating the use of complex and expensive biosurfactant recovery methods such as extraction with solvents or acid precipitation. As raw materials normally can account for 10-30% of the overall production cost, sugars have been proven to be an alternative carbon source for microbial production of rhamnolipids due to its lower costs and straightforward processing techniques. Studies have thus been focused on using tropical agroindustrial crop residues as renewable substrates. Herein, we reviewed studies that are using sugar-containing substrates as carbon sources for producing rhamnolipids. We speculate that sugars derived from agricultural wastes rich in cellulose and sugar-containing wastes are potential carbon sources in fermentation while challenges still remain in large scales.

Sources and geochemical evolution of cyanide and formaldehyde

NASA Technical Reports Server (NTRS)

Arrhenius, G.

1991-01-01

The major source of cyanide has, in current paleoatmospheric models, been assumed to be the reaction of photodissociated thermospheric nitrogen with a limiting supply of stratospheric methane. Formaldehyde may be produced with more ease from an atmosphere of carbon dioxide as the dominant carbon species, and from carbonate in solution or sorbed in double layer hydroxide minerals. Potentially more important sources for cyanide and other carbon containing molecules are the partially photoprotected northern and southern auroral ovals where continuous currents reaching several mega-amperes induce ion-molecule reactions, extending into the lower stratosphere. In simulated environments of this kind, the cyanide ion is known to be produced from oxidized carbon species potentially more abundant than methane. Rainout of cyanide and formaldehyde place them in two different geochemical reaction reservoirs. In the anoxic Archean hydrosphere, about 1mM in Fe2(+), the cyanide ion would have been efficiently converted to the stable ferrocyanide complex Fe(CN) sub 6(4-), protecting it from the commonly considered fate of decomposition by hydrolysis, and eventually incorporating it in pyroaurite type minerals, most efficiently in green rust where it converts to insoluble ferriferrocyanide, prussian blue.

European transition to a low carbon electricity system using a mix of variable renewable energies: carbon saving trajectories as functions of production and storage capacity.

NASA Astrophysics Data System (ADS)

Francois, Baptiste; Creutin, Jean-Dominique

2016-04-01

Today, most of the produced energy is generated from fossil energy sources (i.e. coal, petroleum). As a result, the energy sector is still the main source of greenhouse gas in the atmosphere. For limiting greenhouse gas emission, a transition from fossil to renewable energy is required, increasing gradually the fraction energy coming from variable renewable energy (i.e. solar power, wind power and run-of-the river hydropower, hereafter denoted as VRE). VRE penetration, i.e. the percentage of demand satisfied by variable renewables assuming no storage capacity, is hampered by their variable and un-controllable features. Many studies show that combining different VRE over space smoothes their variability and increases their global penetration by a better match of demand fluctuations. When the demand is not fully supplied by the VRE generation, backup generation is required from stored energy (mostly from dams) or fossil sources, the latter being associated with high greenhouse gas emission. Thus the VRE penetration is a direct indicator of carbon savings and basically depends on the VRE installed capacity, its mix features, and on the installed storage capacity. In this study we analyze the European transition to a low carbon electricity system. Over a selection of representative regions we analyze carbon saving trajectories as functions of VRE production and storage capacities for different scenarios mixing one to three VRE with non-renewables. We show substantial differences between trajectories when the mix of sources is far from the local optimums, when the storage capacity evolves. We bring new elements of reflection about the effect of transport grid features from local independent systems to a European "copper plate". This work is part of the FP7 project COMPLEX (Knowledge based climate mitigation systems for a low carbon economy; Project FP7-ENV-2012 number: 308601; http://www.complex.ac.uk/).

Airborne lidar-based estimates of tropical forest structure in complex terrain: opportunities and trade-offs for REDD+

Treesearch

Veronika Leitold; Michael Keller; Douglas C Morton; Bruce D Cook; Yosio E Shimabukuro

2015-01-01

Background: Carbon stocks and fluxes in tropical forests remain large sources of uncertainty in the global carbon budget. Airborne lidar remote sensing is a powerful tool for estimating aboveground biomass, provided that lidar measurements penetrate dense forest vegetation to generate accurate estimates of surface topography and canopy heights. Tropical forest areas...

Quantifying Carbon-14 for Biology Using Cavity Ring-Down Spectroscopy.

PubMed

McCartt, A Daniel; Ognibene, Ted J; Bench, Graham; Turteltaub, Kenneth W

2016-09-06

A cavity ring-down spectroscopy (CRDS) instrument was developed using mature, robust hardware for the measurement of carbon-14 in biological studies. The system was characterized using carbon-14 elevated glucose samples and returned a linear response up to 387 times contemporary carbon-14 concentrations. Carbon-14 free and contemporary carbon-14 samples with varying carbon-13 concentrations were used to assess the method detection limit of approximately one-third contemporary carbon-14 levels. Sources of inaccuracies are presented and discussed, and the capability to measure carbon-14 in biological samples is demonstrated by comparing pharmacokinetics from carbon-14 dosed guinea pigs analyzed by both CRDS and accelerator mass spectrometry. The CRDS approach presented affords easy access to powerful carbon-14 tracer techniques that can characterize complex biochemical systems.

Data Mining and Complex Problems: Case Study in Composite Materials

NASA Technical Reports Server (NTRS)

Rabelo, Luis; Marin, Mario

2009-01-01

Data mining is defined as the discovery of useful, possibly unexpected, patterns and relationships in data using statistical and non-statistical techniques in order to develop schemes for decision and policy making. Data mining can be used to discover the sources and causes of problems in complex systems. In addition, data mining can support simulation strategies by finding the different constants and parameters to be used in the development of simulation models. This paper introduces a framework for data mining and its application to complex problems. To further explain some of the concepts outlined in this paper, the potential application to the NASA Shuttle Reinforced Carbon-Carbon structures and genetic programming is used as an illustration.

[Research progress and direction of atmospheric brown carbon].

PubMed

Yan, Cai-Qing; Zheng, Mei; Zhang, Yuan-Hang

2014-11-01

Organic aerosol is one of the most important components of atmospheric aerosols. In recent years, organic aerosol has been found and proved to be light absorbing in UV-Visible region. Light absorbing organic carbon (also named as brown carbon) has been one of the forefronts in the field of atmospheric research. Its light absorption contributions to radiative forcing, regional air quality, and global climate change have drawn much attention. Regional air pollution is complex in China. Frequent visibility decline and severe regional haze episodes occurred since January 2013. Previous studies showed high amount of estimated columnar light-absorbing organic carbon in China, and according to current research findings, major sources of fine particulate matter in China (e. g. biomass burning and fossil fuel combustion) were also recognized as the main sources for brown carbon. Considering the high abundance of brown carbon in atmosphere, there is a great need to reconsider and reevaluate contributions of organic aerosol to light absorption, especially its role in haze formation and radiative forcing. However, up to now, basic researches on light absorbing organic carbon are still limited in China. This study aimed to elucidate the need for basic research on brown carbon, summarize previous studies and research progress from different aspects such as sources, composition, measurement, mass concentration distribution, optical property, radiative forcing of brown carbon, point out the existing problems and deficiencies, and put forward suggestions for future study.

KSC-2014-3025

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – Preparations are underway to launch NASA's Orbiting Carbon Observatory-2, or OCO-2, at Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch aboard a United Launch Alliance Delta II rocket is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

KSC-2014-3084

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – The United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, is illuminated on Space Launch Complex 2 on Vandenberg Air Force Base in California following rollback of the mobile service tower. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3071

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – The United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, is illuminated on Space Launch Complex 2 on Vandenberg Air Force Base in California following rollback of the mobile service tower. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

KSC-2014-3081

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – The mobile service tower on Space Launch Complex 2 at Vandenberg Air Force Base in California rolls away from the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3035

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – Preparations are underway on Vandenberg Air Force Base in California to launch NASA's Orbiting Carbon Observatory-2, or OCO-2. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3068

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – The mobile service tower on Space Launch Complex 2 at Vandenberg Air Force Base in California rolls away from the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

Positive Effect of Carbon Sources on Natural Transformation in Escherichia coli: Role of Low-Level Cyclic AMP (cAMP)-cAMP Receptor Protein in the Derepression of rpoS

PubMed Central

Guo, Mengyue; Wang, Huanyu; Xie, Nengbin

2015-01-01

ABSTRACT Natural plasmid transformation of Escherichia coli is a complex process that occurs strictly on agar plates and requires the global stress response factor σS. Here, we showed that additional carbon sources could significantly enhance the transformability of E. coli. Inactivation of phosphotransferase system genes (ptsH, ptsG, and crr) caused an increase in the transformation frequency, and the addition of cyclic AMP (cAMP) neutralized the promotional effect of carbon sources. This implies a negative role of cAMP in natural transformation. Further study showed that crp and cyaA mutations conferred a higher transformation frequency, suggesting that the cAMP-cAMP receptor protein (CRP) complex has an inhibitory effect on transformation. Moreover, we observed that rpoS is negatively regulated by cAMP-CRP in early log phase and that both crp and cyaA mutants show no transformation superiority when rpoS is knocked out. Therefore, it can be concluded that both the crp and cyaA mutations derepress rpoS expression in early log phase, whereby they aid in the promotion of natural transformation ability. We also showed that the accumulation of RpoS during early log phase can account for the enhanced transformation aroused by additional carbon sources. Our results thus demonstrated that the presence of additional carbon sources promotes competence development and natural transformation by reducing cAMP-CRP and, thus, derepressing rpoS expression during log phase. This finding could contribute to a better understanding of the relationship between nutrition state and competence, as well as the mechanism of natural plasmid transformation in E. coli. IMPORTANCE Escherichia coli, which is not usually considered to be naturally transformable, was found to spontaneously take up plasmid DNA on agar plates. Researching the mechanism of natural transformation is important for understanding the role of transformation in evolution, as well as in the transfer of pathogenicity and antibiotic resistance genes. In this work, we found that carbon sources significantly improve transformation by decreasing cAMP. Then, the low level of cAMP-CRP derepresses the general stress response regulator RpoS via a biphasic regulatory pattern, thereby contributing to transformation. Thus, we demonstrate the mechanism by which carbon sources affect natural transformation, which is important for revealing information about the interplay between nutrition state and competence development in E. coli. PMID:26260461

Highly fluorescent carbon quantum dots as nanoprobes for sensitive and selective determination of mercury (II) in surface waters

NASA Astrophysics Data System (ADS)

Hua, Jianhao; Yang, Jian; Zhu, Yan; Zhao, Chunxi; Yang, Yaling

2017-12-01

A novel carbon quantum dots (CQDs) was successfully prepared through one-step green hydrothermal method using polyacrylamide as carbon source. The prepared CQDs were characterized using TEM, XRD, XPS, FT-IR, UV-Vis, and fluorescence spectroscopy. The CQDs was demonstrated as nanoprobes for mercury ion detection, moreover, it demonstrated excitation-dependent and superior stability in acidic and alkaline media. Besides, the probe exhibited a good linearity range (0.25-50 μM) and a low detection limit (13.48 nM). These attractive properties indicated that this novel CQDs can adapt to a variety of complex pH environment, which had extensive prospect and promising application for detection of mercury ions in complex water samples.

Implication of using different carbon sources for denitrification in wastewater treatments.

PubMed

Cherchi, Carla; Onnis-Hayden, Annalisa; El-Shawabkeh, Ibrahim; Gu, April Z

2009-08-01

Application of external carbon sources for denitrification becomes necessary for wastewater treatment plants that have to meet very stringent effluent nitrogen limits (e.g., 3 to 5 mgTN/L). In this study, we evaluated and compared three carbon sources--MicroC (Environmental Operating Solutions, Bourne, Massachusetts), methanol, and acetate-in terms of their denitrification rates and kinetics, effect on overall nitrogen removal performance, and microbial community structure of carbon-specific denitrifying enrichments. Denitrification rates and kinetics were determined with both acclimated and non-acclimated biomass, obtained from laboratory-scale sequencing batch reactor systems or full-scale plants. The results demonstrate the feasibility of the use of MicroC for denitrification processes, with maximum denitrification rates (k(dmax)) of 6.4 mgN/gVSSh and an observed yield of 0.36 mgVSS/mgCOD. Comparable maximum nitrate uptake rates were found with methanol, while acetate showed a maximum denitrification rate nearly twice as high as the others. The maximum growth rates measured at 20 degrees C for MicroC and methanol were 3.7 and 1.2 day(-1), respectively. The implications resulting from the differences in the denitrification rates and kinetics of different carbon sources on the full-scale nitrogen removal performance, under various configurations and operational conditions, were assessed using Biowin (EnviroSim Associates, Ltd., Flamborough, Ontario, Canada) simulations for both pre- and post-denitrification systems. Examination of microbial population structures using Automated Ribosomal Intergenic Spacer Analysis (ARISA) throughout the study period showed dynamic temporal changes and distinct microbial community structures of different carbon-specific denitrifying cultures. The ability of a specific carbon-acclimated denitrifying population to instantly use other carbon source also was investigated, and the chemical-structure-associated behavior patterns observed suggested that the complex biochemical pathways/enzymes involved in the denitrification process depended on the carbon sources used.

Regulation of nitrogen metabolism by GATA zinc finger transcription factors in Yarrowia lipolytica

DOE PAGES

Pomraning, Kyle R.; Bredeweg, Erin L.; Baker, Scott E.; ...

2017-02-15

Here, fungi accumulate lipids in a manner dependent on the quantity and quality of the nitrogen source on which they are growing. In the oleaginous yeast Yarrowia lipolytica, growth on a complex source of nitrogen enables rapid growth and limited accumulation of neutral lipids, while growth on a simple nitrogen source promotes lipid accumulation in large lipid droplets. Here we examined the roles of nitrogen catabolite repression and its regulation by GATA zinc finger transcription factors on lipid metabolism in Y. lipolytica. Deletion of the GATA transcription factor genes gzf3 and gzf2 resulted in nitrogen source-specific growth defects and greatermore » accumulation of lipids when the cells were growing on a simple nitrogen source. Deletion of gzf1, which is most similar to activators of genes repressed by nitrogen catabolite repression in filamentous ascomycetes, did not affect growth on the nitrogen sources tested. We examined gene expression of wild-type and GATA transcription factor mutants on simple and complex nitrogen sources and found that expression of enzymes involved in malate metabolism, beta-oxidation, and ammonia utilization are strongly upregulated on a simple nitrogen source. Deletion of gzf3 results in overexpression of genes with GATAA sites in their promoters, suggesting that it acts as a repressor, while gzf2 is required for expression of ammonia utilization genes but does not grossly affect the transcription level of genes predicted to be controlled by nitrogen catabolite repression. Both GATA transcription factor mutants exhibit decreased expression of genes controlled by carbon catabolite repression via the repressor mig1, including genes for beta-oxidation, highlighting the complex interplay between regulation of carbon, nitrogen, and lipid metabolism.« less

Regulation of nitrogen metabolism by GATA zinc finger transcription factors in Yarrowia lipolytica

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pomraning, Kyle R.; Bredeweg, Erin L.; Baker, Scott E.

Here, fungi accumulate lipids in a manner dependent on the quantity and quality of the nitrogen source on which they are growing. In the oleaginous yeast Yarrowia lipolytica, growth on a complex source of nitrogen enables rapid growth and limited accumulation of neutral lipids, while growth on a simple nitrogen source promotes lipid accumulation in large lipid droplets. Here we examined the roles of nitrogen catabolite repression and its regulation by GATA zinc finger transcription factors on lipid metabolism in Y. lipolytica. Deletion of the GATA transcription factor genes gzf3 and gzf2 resulted in nitrogen source-specific growth defects and greatermore » accumulation of lipids when the cells were growing on a simple nitrogen source. Deletion of gzf1, which is most similar to activators of genes repressed by nitrogen catabolite repression in filamentous ascomycetes, did not affect growth on the nitrogen sources tested. We examined gene expression of wild-type and GATA transcription factor mutants on simple and complex nitrogen sources and found that expression of enzymes involved in malate metabolism, beta-oxidation, and ammonia utilization are strongly upregulated on a simple nitrogen source. Deletion of gzf3 results in overexpression of genes with GATAA sites in their promoters, suggesting that it acts as a repressor, while gzf2 is required for expression of ammonia utilization genes but does not grossly affect the transcription level of genes predicted to be controlled by nitrogen catabolite repression. Both GATA transcription factor mutants exhibit decreased expression of genes controlled by carbon catabolite repression via the repressor mig1, including genes for beta-oxidation, highlighting the complex interplay between regulation of carbon, nitrogen, and lipid metabolism.« less

Carbon reactivation kinetics in GaAs: Its dependence on dopant precursor, doping level, and layer thickness

NASA Astrophysics Data System (ADS)

Mimila-Arroyo, J.; Bland, S.; Barbé, M.

2002-05-01

The reactivation kinetics of the acceptor behavior of carbon, its dependence on dopant precursors, doping level, layer thickness, and annealing temperature, as well as the behavior of carbon-hydrogen complexes in GaAs grown by metalorganic chemical vapor deposition are studied. Independent of the carbon source, in the "as grown" material, systematically carbon hydrogen complexes are present and the hole concentration is lower than the corresponding carbon concentration. The carbon reactivation kinetics was achieved by ex situ rapid thermal annealing through a series of multistage annealing experiments and assessed at each annealing stage by infrared absorption, hydrogen secondary ion mass spectroscopy profiling, and hole concentration measurements. Carbon reactivation occurs solely by the debonding of hydrogen from the isolated carbon acceptor and its out-diffusion from the sample. The carbon reactivation kinetics can be treated as a first order one with an activation energy, Ea=1.42±0.01 eV, independent of doping precursors, doping level, and layer thickness. The reactivation constant results to decrease as doping level and layer thickness increase. An empirical formula has been obtained that allows one to calculate the reactivation constant as a function of the carbon doping, layer thickness, and annealing temperature, allowing one to determine the optimal carbon reactivation conditions for any C:GaAs layer.

Measurements of Carbon Dioxide, Methane, and Other Related Tracers at High Spatial and Temporal Resolution in an Urban Environment

NASA Astrophysics Data System (ADS)

Yasuhara, Scott; Forgeron, Jeff; Rella, Chris; Franz, Patrick; Jacobson, Gloria; Chiao, Sen; Saad, Nabil

2013-04-01

The ability to quantify sources and sinks of carbon dioxide and methane on the urban scale is essential for understanding the atmospheric drivers to global climate change. In the 'top-down' approach, overall carbon fluxes are determined by combining remote measurements of carbon dioxide concentrations with complex atmospheric transport models, and these emissions measurements are compared to 'bottom-up' predictions based on detailed inventories of the sources and sinks of carbon, both anthropogenic and biogenic in nature. This approach, which has proven to be effective at continental scales, becomes challenging to implement at urban scales, due to poorly understood atmospheric transport models and high variability of the emissions sources in space (e.g., factories, highways, green spaces) and time (rush hours, factory shifts and shutdowns, and diurnal and seasonal variation in residential energy use). New measurement and analysis techniques are required to make sense of the carbon dioxide signal in cities. Here we present detailed, high spatial- and temporal- resolution greenhouse gas measurements made by multiple Picarro-CRDS analyzers in Silicon Valley in California. Real-time carbon dioxide data from a 20-month period are combined with real-time carbon monoxide, methane, and acetylene to partition the observed carbon dioxide concentrations between different anthropogenic sectors (e.g., transport, residential) and biogenic sources. Real-time wind rose data are also combined with real-time methane data to help identify the direction of local emissions of methane. High resolution WRF models are also included to better understand the dynamics of the boundary layer. The ratio between carbon dioxide and carbon monoxide is shown to vary over more than a factor of two from season to season or even from day to night, indicating rapid but frequent shifts in the balance between different carbon dioxide sources. Additional information is given by acetylene, a fossil fuel combustion tracer that provides complimentary information to carbon monoxide. In spring and summer, the combined signal of the urban center and the surrounding biosphere and urban green space is explored. These methods show great promise for identifying, quantifying, and partitioning urban-ecological (carbon) emissions.

Quantifying Carbon-14 for Biology Using Cavity Ring-Down Spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCartt, A. Daniel; Ognibene, Ted J.; Bench, Graham

A cavity ring-down spectroscopy (CRDS) instrument was developed using mature, robust hardware for the measurement of carbon-14 in biological studies. The system was characterized using carbon-14 elevated glucose samples and returned a linear response up to 387 times contemporary carbon-14 concentrations. Carbon-14 free and contemporary carbon-14 samples with varying carbon-13 concentrations were used to assess the method detection limit of approximately one-third contemporary carbon-14 levels. Sources of inaccuracies are presented and discussed, and the capability to measure carbon-14 in biological samples is demonstrated by comparing pharmacokinetics from carbon-14 dosed guinea pigs analyzed by both CRDS and accelerator mass spectrometry. Here,more » the CRDS approach presented affords easy access to powerful carbon-14 tracer techniques that can characterize complex biochemical systems.« less

Quantifying Carbon-14 for Biology Using Cavity Ring-Down Spectroscopy

DOE PAGES

McCartt, A. Daniel; Ognibene, Ted J.; Bench, Graham; ...

2016-07-26

A cavity ring-down spectroscopy (CRDS) instrument was developed using mature, robust hardware for the measurement of carbon-14 in biological studies. The system was characterized using carbon-14 elevated glucose samples and returned a linear response up to 387 times contemporary carbon-14 concentrations. Carbon-14 free and contemporary carbon-14 samples with varying carbon-13 concentrations were used to assess the method detection limit of approximately one-third contemporary carbon-14 levels. Sources of inaccuracies are presented and discussed, and the capability to measure carbon-14 in biological samples is demonstrated by comparing pharmacokinetics from carbon-14 dosed guinea pigs analyzed by both CRDS and accelerator mass spectrometry. Here,more » the CRDS approach presented affords easy access to powerful carbon-14 tracer techniques that can characterize complex biochemical systems.« less

Pyrolysis Oil-Based Lipid Production as Biodiesel Feedstock by Rhodococcus opacus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wei, Zhen; Zeng, Guangming; Kosa, Matyas

2014-11-07

Light oil from pyrolysis, which accounts for ~10 % carbon yield of the starting biomass, is a complex aqueous product that is difficult to utilize and usually discarded. This work presents the feasibility of light oil as a sole carbon source to support the growth of Rhodococcus opacus (R. opacus) that in turn accumulate triacylglycerols as biodiesel feedstock. Two types of bacteria (R. opacus PD630 and DSM 1069) were selected in this study. Research results showed that after short adaption periods both strains can grow well on this complex carbon source, as proved by the consumption of oligomers and monomersmore » in light oil. Lipid content by R. opacus PD630 and DSM 1069 was observed up to 25.8 % and 22.0 % of cell dry weight, respectively. Palmitic and stearic acids were found to be the predominant fatty acids in these bacterial cells. In addition, the light oil-based lipid production can be enhanced by reducing the pH value from 7 to 4, especially in case of DSM 1069.« less

Effects of harvest, fire, and pest/pathogen disturbances on the West Cascades ecoregion carbon balance.

PubMed

Turner, David P; Ritts, William D; Kennedy, Robert E; Gray, Andrew N; Yang, Zhiqiang

2015-12-01

Disturbance is a key influence on forest carbon dynamics, but the complexity of spatial and temporal patterns in forest disturbance makes it difficult to quantify their impacts on carbon flux over broad spatial domains. Here we used a time series of Landsat remote sensing images and a climate-driven carbon cycle process model to evaluate carbon fluxes at the ecoregion scale in western Oregon. Thirteen percent of total forest area in the West Cascades ecoregion was disturbed during the reference interval (1991-2010). The disturbance regime was dominated by harvesting (59 % of all area disturbed), with lower levels of fire (23 %), and pest/pathogen mortality (18 %). Ecoregion total Net Ecosystem Production was positive (a carbon sink) in all years, with greater carbon uptake in relatively cool years. Localized carbon source areas were associated with recent harvests and fire. Net Ecosystem Exchange (including direct fire emissions) showed greater interannual variation and became negative (a source) in the highest fire years. Net Ecosystem Carbon Balance (i.e. change in carbon stocks) was more positive on public that private forestland, because of a lower disturbance rate, and more positive in the decade of the 1990s than in the warmer and drier 2000s because of lower net ecosystem production and higher direct fire emissions in the 2000s. Despite recurrent disturbances, the West Cascades ecoregion has maintained a positive carbon balance in recent decades. The high degree of spatial and temporal resolution in these simulations permits improved attribution of regional carbon sources and sinks.

Production of biomass, polysaccharides, and ganoderic acid using non-conventional carbon sources under submerged culture of the Lingzhi or Reishi medicinal mushroom, Ganoderma lucidum (W.Curt.:Fr.)P. Karst. (higher Basidiomycetes).

PubMed

Zapata, Paola; Rojas, Diego; Atehortúa, Lucía

2012-01-01

The effect of different non-conventional carbon sources was studied in the submerged culture of Lingzhi or Reishi medicinal mushroom, Ganoderma lucidum, for simultaneous production of mycelial biomass, bioactive ganoderic acid, and polysaccharides, in less time, using non-conventional carbon sources to minimize the high costs of current culture media. The optimal medium composition was defined as (g/L): 50 of barley flour, 0.2 of KH2PO4, 0.1 of MgSO4ⁱ7H2O, and 1 NH4Cl. Cultivated under this complex culture medium, the mycelial biomass production was 23.49 ± 0.37 g/L; the extracellular polysaccharides production was 2.72 ± 0.11 g/L; the intracellular polysaccharides production was 2.22 ± 0.06 g/L; the ganoderic acids production was 299.67 ± 11.63 mg/L. One liter of culture medium developed in this project was priced at USD $ 0.11 if barley flour is used as carbon source or $ 0.13 with oat flour in order to get a good amount of products of interest.

Tracing Carbon Sources through Aquatic and Terrestrial Food Webs Using Amino Acid Stable Isotope Fingerprinting

PubMed Central

Larsen, Thomas; Ventura, Marc; Andersen, Nils; O’Brien, Diane M.; Piatkowski, Uwe; McCarthy, Matthew D.

2013-01-01

Tracing the origin of nutrients is a fundamental goal of food web research but methodological issues associated with current research techniques such as using stable isotope ratios of bulk tissue can lead to confounding results. We investigated whether naturally occurring δ13C patterns among amino acids (δ13CAA) could distinguish between multiple aquatic and terrestrial primary production sources. We found that δ13CAA patterns in contrast to bulk δ13C values distinguished between carbon derived from algae, seagrass, terrestrial plants, bacteria and fungi. Furthermore, we showed for two aquatic producers that their δ13CAA patterns were largely unaffected by different environmental conditions despite substantial shifts in bulk δ13C values. The potential of assessing the major carbon sources at the base of the food web was demonstrated for freshwater, pelagic, and estuarine consumers; consumer δ13C patterns of essential amino acids largely matched those of the dominant primary producers in each system. Since amino acids make up about half of organismal carbon, source diagnostic isotope fingerprints can be used as a new complementary approach to overcome some of the limitations of variable source bulk isotope values commonly encountered in estuarine areas and other complex environments with mixed aquatic and terrestrial inputs. PMID:24069196

Tracing carbon sources through aquatic and terrestrial food webs using amino acid stable isotope fingerprinting.

PubMed

Larsen, Thomas; Ventura, Marc; Andersen, Nils; O'Brien, Diane M; Piatkowski, Uwe; McCarthy, Matthew D

2013-01-01

Tracing the origin of nutrients is a fundamental goal of food web research but methodological issues associated with current research techniques such as using stable isotope ratios of bulk tissue can lead to confounding results. We investigated whether naturally occurring δ(13)C patterns among amino acids (δ(13)CAA) could distinguish between multiple aquatic and terrestrial primary production sources. We found that δ(13)CAA patterns in contrast to bulk δ(13)C values distinguished between carbon derived from algae, seagrass, terrestrial plants, bacteria and fungi. Furthermore, we showed for two aquatic producers that their δ(13)CAA patterns were largely unaffected by different environmental conditions despite substantial shifts in bulk δ(13)C values. The potential of assessing the major carbon sources at the base of the food web was demonstrated for freshwater, pelagic, and estuarine consumers; consumer δ(13)C patterns of essential amino acids largely matched those of the dominant primary producers in each system. Since amino acids make up about half of organismal carbon, source diagnostic isotope fingerprints can be used as a new complementary approach to overcome some of the limitations of variable source bulk isotope values commonly encountered in estuarine areas and other complex environments with mixed aquatic and terrestrial inputs.

Evaluating soil carbon in global climate models: benchmarking, future projections, and model drivers

NASA Astrophysics Data System (ADS)

Todd-Brown, K. E.; Randerson, J. T.; Post, W. M.; Allison, S. D.

2012-12-01

The carbon cycle plays a critical role in how the climate responds to anthropogenic carbon dioxide. To evaluate how well Earth system models (ESMs) from the Climate Model Intercomparison Project (CMIP5) represent the carbon cycle, we examined predictions of current soil carbon stocks from the historical simulation. We compared the soil and litter carbon pools from 17 ESMs with data on soil carbon stocks from the Harmonized World Soil Database (HWSD). We also examined soil carbon predictions for 2100 from 16 ESMs from the rcp85 (highest radiative forcing) simulation to investigate the effects of climate change on soil carbon stocks. In both analyses, we used a reduced complexity model to separate the effects of variation in model drivers from the effects of model parameters on soil carbon predictions. Drivers included NPP, soil temperature, and soil moisture, and the reduced complexity model represented one pool of soil carbon as a function of these drivers. The ESMs predicted global soil carbon totals of 500 to 2980 Pg-C, compared to 1260 Pg-C in the HWSD. This 5-fold variation in predicted soil stocks was a consequence of a 3.4-fold variation in NPP inputs and 3.8-fold variability in mean global turnover times. None of the ESMs correlated well with the global distribution of soil carbon in the HWSD (Pearson's correlation <0.40, RMSE 9-22 kg m-2). On a biome level there was a broad range of agreement between the ESMs and the HWSD. Some models predicted HWSD biome totals well (R2=0.91) while others did not (R2=0.23). All of the ESM terrestrial decomposition models are structurally similar with outputs that were well described by a reduced complexity model that included NPP and soil temperature (R2 of 0.73-0.93). However, MPI-ESM-LR outputs showed only a moderate fit to this model (R2=0.51), and CanESM2 outputs were better described by a reduced model that included soil moisture (R2=0.74), We also found a broad range in soil carbon responses to climate change predicted by the ESMs, with changes of -480 to 230 Pg-C from 2005-2100. All models that reported NPP and heterotrophic respiration showed increases in both of these processes over the simulated period. In two of the models, soils switched from a global sink for carbon to a net source. Of the remaining models, half predicted that soils were a sink for carbon throughout the time period and the other half predicted that soils were a carbon source.. Heterotrophic respiration in most of the models from 2005-2100 was well explained by a reduced complexity model dependent on soil carbon, soil temperature, and soil moisture (R2 values >0.74). However, MPI-ESM (R2=0.45) showed only moderate fit to this model. Our analysis shows that soil carbon predictions from ESMs are highly variable, with much of this variability due to model parameterization and variations in driving variables. Furthermore, our reduced complexity models show that most variation in ESM outputs can be explained by a simple one-pool model with a small number of drivers and parameters. Therefore, agreement between soil carbon predictions across models could improve substantially by reconciling differences in driving variables and the parameters that link soil carbon with environmental drivers. However it is unclear if this model agreement would reflect what is truly happening in the Earth system.

Isotopic Fingerprints of Iron-Cyanide Complexes in the Environment.

PubMed

Mansfeldt, Tim; Höhener, Patrick

2016-07-19

Tracing the origin of iron-cyanide complexes in the environment is important because these compounds are potentially toxic. We determined the stable isotopic compositions of cyanide-carbon (CCN) and cyanide-nitrogen (NCN) in 127 contaminated solids and 11 samples of contaminated groundwater from coal carbonization sites, blast furnace operations, and commercial cyanide applications. Coal-carbonization-related cyanides had unique high mean δ(13)CCN values of -10.5 ± 3.5‰ for the solids and -16.1 ± 1.2‰ for the groundwater samples, while the values for blast furnace sludge (-26.9 ± 1.5‰), commercial cyanides (-26.0 ± 3.0‰), and their corresponding groundwaters were significantly lower. Determination of δ(13)CCN is a promising tool for identifying the source of cyanide contamination. However, for coal carbonization sites, historical research into the manufacturing process is necessary because a nonconventional gas works site exhibited exceptionally low δ(13)CCN values of -22.7 ± 1.7‰. The δ(15)NCN values for samples related to coal carbonization and blast furnaces overlapped within a range of +0.1 to +10.3‰, but very high δ(15)NCN values seemed to be indicative for a cyanide source in the blast furnace. In contrast, commercial cyanides tend to have lower δ(15)NCN values of -5.6 to +1.9‰ in solids and -0.5 to +3.0‰ in the groundwater.

KSC-2014-3073

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – The mobile service tower has been rolled back from the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, on Space Launch Complex 2 at Vandenberg Air Force Base in California, one of the final steps leading up to launch. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

KSC-2014-3062

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – News media representatives converge on Space Launch Complex 2 at Vandenberg Air Force Base in California to cover the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. Final preparations for launch of OCO-2 at 5:56 a.m. EDT on July 1 aboard a United Launch Alliance Delta II rocket are underway on the pad. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3045

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – Ken Jucks, Orbiting Carbon Observatory-2 project executive at NASA Headquarters, participates in a mission science briefing at Vandenberg Air Force Base in California prior to the launch of the observatory, or OCO-2. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3086

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Nightfall on Space Launch Complex 2 at Vandenberg Air Force Base in California follows the rollback of the mobile service tower for launch of NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard a United Launch Alliance Delta II rocket. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3085

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – The mobile service tower has been rolled back from the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, on Space Launch Complex 2 at Vandenberg Air Force Base in California, one of the final steps leading up to launch. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3067

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – The mobile service tower on Space Launch Complex 2 at Vandenberg Air Force Base in California begins to roll back from the United Launch Alliance Delta II rocket with NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

KSC-2014-3080

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – The mobile service tower on Space Launch Complex 2 at Vandenberg Air Force Base in California begins to roll back from the United Launch Alliance Delta II rocket with NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3013

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite sits atop a United Launch Alliance Delta II rocket prior to encapsulation in its payload fairing at Space Launch Complex 2 at Vandenberg Air Force Base in California. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

KSC-2014-3083

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Final preparations are underway for the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard a United Launch Alliance Delta II rocket, following rollback of the mobile service tower on Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3012

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, the payload fairing for NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite is being prepared for encapsulation atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

KSC-2014-3087

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – At Vandenberg Air Force Base in California, the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, awaits loading of its cryogenic propellants following rollback of the mobile service tower on Space Launch Complex 2. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3116

NASA Image and Video Library

2014-07-02

VANDENBERG AIR FORCE BASE, Calif. – The United Launch Alliance Delta II rocket lifts off Space Launch Complex 2 on Vandenberg Air Force Base in California, carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, to orbit. Launch was on schedule at 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/30th Space Communication Squadron

KSC-2014-3048

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – Ken Jucks, Orbiting Carbon Observatory-2 project executive at NASA Headquarters, participates in a mission science briefing at Vandenberg Air Force Base in California prior to the launch of the observatory, or OCO-2. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3011

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite sits atop a United Launch Alliance Delta II rocket prior to encapsulation in its payload fairing at Space Launch Complex 2 at Vandenberg Air Force Base in California. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

KSC-2014-2993

NASA Image and Video Library

2014-06-16

VANDENBERG AIR FORCE BASE, Calif. – Technicians in the Astrotech Payload Processing Facility on Vandenberg Air Force Base in California make final preparations to transport NASA's Orbiting Carbon Observatory-2, or OCO-2, to Space Launch Complex 2 for enclosure in the Delta II payload fairing. Launch aboard a United Launch Alliance Delta II rocket is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

KSC-2014-3075

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Nightfall on Space Launch Complex 2 at Vandenberg Air Force Base in California follows the rollback of the mobile service tower for launch of NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard a United Launch Alliance Delta II rocket. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

KSC-2014-2990

NASA Image and Video Library

2014-06-16

VANDENBERG AIR FORCE BASE, Calif. – Final preparations are underway in the Astrotech Payload Processing Facility on Vandenberg Air Force Base in California to transport NASA's Orbiting Carbon Observatory-2, or OCO-2, to Space Launch Complex 2 for encapsulation in the Delta II payload fairing. Launch aboard a United Launch Alliance Delta II rocket is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

KSC-2014-3037

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – Tim Dunn, launch manager for NASA's Launch Services Program, participates in a prelaunch news conference at Vandenberg Air Force Base in California prior to the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3069

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, is ready for launch aboard a United Launch Alliance Delta II rocket following rollback of the mobile service tower on Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

KSC-2014-3041

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – Betsy Edwards, Orbiting Carbon Observatory-2 project executive at NASA Headquarters, participates in a prelaunch news conference at Vandenberg Air Force Base in California prior to the launch of the observatory, or OCO-2. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3010

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite sits atop a United Launch Alliance Delta II rocket prior to encapsulation in its payload fairing at Space Launch Complex 2 at Vandenberg Air Force Base in California. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

KSC-2014-3046

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – David Crisp, Orbiting Carbon Observatory-2 science team leader at NASA's Jet Propulsion Laboratory, participates in a mission science briefing at Vandenberg Air Force Base in California prior to the launch of the observatory, or OCO-2. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3036

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – Vernon Thorp, United Launch Alliance program manager for NASA Missions, participates in a prelaunch news conference at Vandenberg Air Force Base in California prior to the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3076

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Space Launch Complex 2 at Vandenberg Air Force Base in California is illuminated following the rollback of the mobile service tower, preparing the way for launch of NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard a United Launch Alliance Delta II rocket. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

KSC-2014-3108

NASA Image and Video Library

2014-07-02

VANDENBERG AIR FORCE BASE, Calif. – At Space Launch Complex 2 on Vandenberg Air Force Base in California, an exhaust cloud builds around the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, into space. ): Launch was on schedule at 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA

KSC-2014-3088

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Space Launch Complex 2 on Vandenberg Air Force Base in California is illuminated following the rollback of the mobile service tower, preparing the way for launch of NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard a United Launch Alliance Delta II rocket. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3072

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – The United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, is ready for launch over the flame trench on Space Launch Complex 2 at Vandenberg Air Force Base in California following rollback of the mobile service tower. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

KSC-2014-3014

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite sits atop a United Launch Alliance Delta II rocket prior to encapsulation in its payload fairing at Space Launch Complex 2 at Vandenberg Air Force Base in California. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

KSC-2014-3079

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Preparations are underway to roll the mobile service tower away from the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, at Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3082

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, stands ready for launch aboard a United Launch Alliance Delta II rocket following rollback of the mobile service tower on Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3078

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Logos affixed to the United Launch Alliance Delta II rocket in the mobile service tower on Space Launch Complex 2 at Vandenberg Air Force Base in California identify the major participants in the upcoming launch. The rocket will be carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, to orbit. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3070

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Final preparations are underway for the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard a United Launch Alliance Delta II rocket, following rollback of the mobile service tower on Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

KSC-2014-3040

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – Betsy Edwards, Orbiting Carbon Observatory-2 project executive at NASA Headquarters, participates in a prelaunch news conference at Vandenberg Air Force Base in California prior to the launch of the observatory, or OCO-2. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3050

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – Ken Jucks, Orbiting Carbon Observatory-2 project executive at NASA Headquarters, participates in a mission science briefing at Vandenberg Air Force Base in California prior to the launch of the observatory, or OCO-2. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3074

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – At Vandenberg Air Force Base in California, the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, awaits loading of its cryogenic propellants following rollback of the mobile service tower on Space Launch Complex 2. Launch is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

Molecular identification of organic compounds in atmospheric complex mixtures and relationship to atmospheric chemistry and sources.

PubMed

Mazurek, Monica A

2002-12-01

This article describes a chemical characterization approach for complex organic compound mixtures associated with fine atmospheric particles of diameters less than 2.5 m (PM2.5). It relates molecular- and bulk-level chemical characteristics of the complex mixture to atmospheric chemistry and to emission sources. Overall, the analytical approach describes the organic complex mixtures in terms of a chemical mass balance (CMB). Here, the complex mixture is related to a bulk elemental measurement (total carbon) and is broken down systematically into functional groups and molecular compositions. The CMB and molecular-level information can be used to understand the sources of the atmospheric fine particles through conversion of chromatographic data and by incorporation into receptor-based CMB models. Once described and quantified within a mass balance framework, the chemical profiles for aerosol organic matter can be applied to existing air quality issues. Examples include understanding health effects of PM2.5 and defining and controlling key sources of anthropogenic fine particles. Overall, the organic aerosol compositional data provide chemical information needed for effective PM2.5 management.

Mineralized alginate hydrogels using marine carbonates for bone tissue engineering applications.

PubMed

Diaz-Rodriguez, P; Garcia-Triñanes, P; Echezarreta López, M M; Santoveña, A; Landin, M

2018-09-01

The search for an ideal bone tissue replacement has led to the development of new composite materials designed to simulate the complex inorganic/organic structure of bone. The present work is focused on the development of mineralized calcium alginate hydrogels by the addition of marine derived calcium carbonate biomineral particles. Following a novel approach, we were able to obtain calcium carbonate particles of high purity and complex micro and nanostructure dependent on the source material. Three different types of alginates were selected to develop inorganic/organic scaffolds in order to correlate alginate composition with scaffold properties and cell behavior. The incorporation of calcium carbonates into alginate networks was able to promote extracellular matrix mineralization and osteoblastic differentiation of mesenchymal stem cells when added at 7 mg/ml. We demonstrated that the selection of the alginate type and calcium carbonate origin is crucial to obtain adequate systems for bone tissue engineering as they modulate the mechanical properties and cell differentiation. Copyright © 2018 Elsevier Ltd. All rights reserved.

Authigenic carbonate formation at hydrocarbon seeps in continental margin sediments: A comparative study

USGS Publications Warehouse

Naehr, T.H.; Eichhubl, P.; Orphan, V.J.; Hovland, M.; Paull, C.K.; Ussler, W.; Lorenson, T.D.; Greene, H. Gary

2007-01-01

Authigenic carbonates from five continental margin locations, the Eel River Basin, Monterey Bay, Santa Barbara Basin, the Sea of Okhotsk, and the North Sea, exhibit a wide range of mineralogical and stable isotopic compositions. These precipitates include aragonite, low- and high-Mg calcite, and dolomite. The carbon isotopic composition of carbonates varies widely, ranging from -60??? to +26???, indicating complex carbon sources that include 13C-depleted microbial and thermogenic methane and residual, 13C-enriched, bicarbonate. A similarly large variability of ??18O values (-5.5??? to +8.9???) demonstrates the geochemical complexity of these sites, with some samples pointing toward an 18O-enriched oxygen source possibly related to advection of 18O-enriched formation water or to the decomposition of gas hydrate. Samples depleted in 18O are consistent with formation deeper in the sediment or mixing of pore fluids with meteoric water during carbonate precipitation. A wide range of isotopic and mineralogical variation in authigenic carbonate composition within individual study areas but common trends across multiple geographic areas suggest that these parameters alone are not indicative for certain tectonic or geochemical settings. Rather, the observed variations probably reflect local controls on the flux of carbon and other reduced ions, such as faults, fluid conduits, the presence or absence of gas hydrate in the sediment, and the temporal evolution of the local carbon reservoir. Areas with seafloor carbonates that indicate formation at greater depth below the sediment-water interface must have undergone uplift and erosion in the past or are still being uplifted. Consequently, the occurrence of carbonate slabs on the seafloor in areas of active hydrocarbon seepage is commonly an indicator of exhumation following carbonate precipitation in the shallow subsurface. Therefore, careful petrographic and geochemical analyses are critical components necessary for the correct interpretation of processes related to hydrocarbon seepage in continental margin environments and elsewhere. ?? 2007 Elsevier Ltd. All rights reserved.

Polymorphism of Malassezia furfur.

PubMed

Salkin, I F; Gordon, M A

1977-04-01

Alterations in the morphologic and physiologic characters of 11 isolates of Pityrosporum orbiculare were noted upon prolonged maintenance in pure culture. Successive subculturing of each isolate resulted in its progressive conversion from globose (P. orbiculare) through ovoid to cylindrical (P. ovale) form. Globose forms utilized neither olive oil nor Tween 20 as a sole carbon source, nor KNO3 as a sole source of nitrogen, while ovoid and cylindrical forms utilized both of these carbon sources, and one of four strains of the cylindrical form assimilated KNO3. These results suggest that P. orbiculare and P. ovale are stages in the complex developmental cycle of a single species (Malassezia furfur), but the three names should be preserved until the life cycle is more fully understood.

The nutritional status of Methanosarcina acetivorans regulates glycogen metabolism and gluconeogenesis and glycolysis fluxes.

PubMed

Santiago-Martínez, Michel Geovanni; Encalada, Rusely; Lira-Silva, Elizabeth; Pineda, Erika; Gallardo-Pérez, Juan Carlos; Reyes-García, Marco Antonio; Saavedra, Emma; Moreno-Sánchez, Rafael; Marín-Hernández, Alvaro; Jasso-Chávez, Ricardo

2016-05-01

Gluconeogenesis is an essential pathway in methanogens because they are unable to use exogenous hexoses as carbon source for cell growth. With the aim of understanding the regulatory mechanisms of central carbon metabolism in Methanosarcina acetivorans, the present study investigated gene expression, the activities and metabolic regulation of key enzymes, metabolite contents and fluxes of gluconeogenesis, as well as glycolysis and glycogen synthesis/degradation pathways. Cells were grown with methanol as a carbon source. Key enzymes were kinetically characterized at physiological pH/temperature. Active consumption of methanol during exponential cell growth correlated with significant methanogenesis, gluconeogenic flux and steady glycogen synthesis. After methanol exhaustion, cells reached the stationary growth phase, which correlated with the rise in glycogen consumption and glycolytic flux, decreased methanogenesis, negligible acetate production and an absence of gluconeogenesis. Elevated activities of carbon monoxide dehydrogenase/acetyl-CoA synthetase complex and pyruvate: ferredoxin oxidoreductase suggested the generation of acetyl-CoA and pyruvate for glycogen synthesis. In the early stationary growth phase, the transcript contents and activities of pyruvate phosphate dikinase, fructose 1,6-bisphosphatase and glycogen synthase decreased, whereas those of glycogen phosphorylase, ADP-phosphofructokinase and pyruvate kinase increased. Therefore, glycogen and gluconeogenic metabolites were synthesized when an external carbon source was provided. Once such a carbon source became depleted, glycolysis and methanogenesis fed by glycogen degradation provided the ATP supply. Weak inhibition of key enzymes by metabolites suggested that the pathways evaluated were mainly transcriptionally regulated. Because glycogen metabolism and glycolysis/gluconeogenesis are not present in all methanogens, the overall data suggest that glycogen storage might represent an environmental advantage for methanosarcinales when carbon sources are scarce. Also, the understanding of the central carbohydrate metabolism in methanosarcinales may help to optimize methane production. © 2016 Federation of European Biochemical Societies.

Evolution of chemical and isotopic composition of inorganic carbon in a complex semi-arid zone environment: Consequences for groundwater dating using radiocarbon

NASA Astrophysics Data System (ADS)

Meredith, K. T.; Han, L. F.; Hollins, S. E.; Cendón, D. I.; Jacobsen, G. E.; Baker, A.

2016-09-01

Estimating groundwater age is important for any groundwater resource assessment and radiocarbon (14C) dating of dissolved inorganic carbon (DIC) can provide this information. In semi-arid zone (i.e. water-limited environments), there are a multitude of reasons why 14C dating of groundwater and traditional correction models may not be directly transferable. Some include; (1) the complex hydrological responses of these systems that lead to a mixture of different ages in the aquifer(s), (2) the varied sources, origins and ages of organic matter in the unsaturated zone and (3) high evaporation rates. These all influence the evolution of DIC and are not easily accounted for in traditional correction models. In this study, we determined carbon isotope data for; DIC in water, carbonate minerals in the sediments, sediment organic matter, soil gas CO2 from the unsaturated zone, and vegetation samples. The samples were collected after an extended drought, and again after a flood event, to capture the evolution of DIC after varying hydrological regimes. A graphical method (Han et al., 2012) was applied for interpretation of the carbon geochemical and isotopic data. Simple forward mass-balance modelling was carried out on key geochemical processes involving carbon and agreed well with observed data. High values of DIC and δ13CDIC, and low 14CDIC could not be explained by a simple carbonate mineral-CO2 gas dissolution process. Instead it is suggested that during extended drought, water-sediment interaction leads to ion exchange processes within the top ∼10-20 m of the aquifer which promotes greater calcite dissolution in saline groundwater. This process was found to contribute more than half of the DIC, which is from a mostly 'dead' carbon source. DIC is also influenced by carbon exchange between DIC in water and carbonate minerals found in the top 2 m of the unsaturated zone. This process occurs because of repeated dissolution/precipitation of carbonate that is dependent on the water salinity driven by drought and periodic flooding conditions. This study shows that although 14C cannot be directly applied as a dating tool in some circumstances, carbon geochemical/isotopic data can be useful in hydrological investigations related to identifying groundwater sources, mixing relations, recharge processes, geochemical evolution, and interaction with surface water.

Impacts of black carbon and co-pollutant emissions from transportation sector in Mexico City

NASA Astrophysics Data System (ADS)

Zavala, Miguel; Almanza, Victor; Garcia, Agustin; Jazcilevich, Aron; Lei, Wenfang; Molina, Luisa

2016-04-01

Black carbon is one of the most important short-lived climate-forcing agents, which is harmful to human health and also contributes significantly to climate change. Transportation is one of the largest sources of black carbon emissions in many megacities and urban complexes, with diesel vehicles leading the way. Both on-road and off-road vehicles can emit substantial amounts of harmful BC-containing particulate matter (PM) and are also responsible for large emissions of carbon dioxide (CO2), carbon monoxide (CO), nitrogen oxides (NOx), and many other co-emitted volatile organic compounds (VOCs). Regionally, black carbon emissions contributions from mobile sources may vary widely depending on the technical characteristics of the vehicle fleet, the quality and chemical properties of the fuels consumed, and the degree of local development and economic activities that foster wider and more frequent or intensive use of vehicles. This presentation will review and assess the emissions of black carbon from the on-road and off-road transportation sector in the Mexico City Metropolitan Area. Viable mitigation strategies, including innovative technological alternatives to reduce black carbon and co-pollutants in diesel vehicles and their impacts on climate, human health and ecosystems will be described.

The North American Energy System: Overview of the 3rd Chapter of SOCCR-2

NASA Astrophysics Data System (ADS)

Marcotullio, P. J.

2016-12-01

North America, including Canada, Mexico and the United States, has a large and complex energy system, which includes the extraction and conversion of primary energy sources and their storage, transmission, distribution and ultimate end use in the building, transportation and industrial sectors. The chapter overviews this system focusing on our understanding of the energy trends and system feedback dynamics, key drivers of change, and subsequent carbon emissions and the basis for carbon management. We also put the carbon emissions from the North American system in global context. Highlights include the changes to the system (sources, fuel mix, drivers, infrastructure, etc.,) over the past decade, and a review of scenarios that provide glimpses into future emissions levels and meeting the requirements for decarbonization in the medium and longer term.

Depleted δ13C Values in Salt Dome Cap Rock Organic Matter and Implications for Microbial Metabolism and Fixation

NASA Astrophysics Data System (ADS)

Loyd, S. J.; Lu, L.; Caesar, K. H.; Kyle, R.

2015-12-01

Salt domes occur throughout the Gulf Coast Region USA and are often associated with trapped hydrocarbons. These salt domes can be capped by sulfate and carbonate minerals that result from complex digenetic interactions in the subsurface. The specific natures of these interactions are poorly understood, in particular the role of microbes in facilitating mineralization and element cycling. Carbon isotope compositions of cap rock calcites (δ13Ccarb) are highly variable and range from near neutral to less than -40‰ (VPDB) indicative of methane-sourced carbon. These low values and the common coexistence of elemental sulfur and metal sulfides have spurred hypotheses invoking microbial sulfate reduction as driving carbonate mineral authigenesis. Here, we present new organic carbon isotope (δ13Corg) data that, similar to δ13Ccarb, exhibit depletions below -30 to -25‰. These δ13Corg values are lower than local liquid hydrocarbons and "normal" marine organic matter reflecting either microbial fixation of methane-sourced carbon or microbial fractionation from liquid hydrocarbon sources. The combined carbon isotope data (δ13Ccarb and δ13Corg) indicate that methane likely plays an important role in microbial cycling in salt domes. The δ13Corg values are similar to those of anaerobic oxidation of methane (AOM) related communities from methane-sulfate controlled marine sediments. Ultimately, salt dome environments may share some important characteristics with AOM systems.

Genes of the N-Methylglutamate Pathway Are Essential for Growth of Methylobacterium extorquens DM4 with Monomethylamine

PubMed Central

Gruffaz, Christelle; Muller, Emilie E. L.; Louhichi-Jelail, Yousra; Nelli, Yella R.; Guichard, Gilles

2014-01-01

Monomethylamine (MMA, CH3NH2) can be used as a carbon and nitrogen source by many methylotrophic bacteria. Methylobacterium extorquens DM4 lacks the MMA dehydrogenase encoded by mau genes, which in M. extorquens AM1 is essential for growth on MMA. Identification and characterization of minitransposon mutants with an MMA-dependent phenotype showed that strain DM4 grows with MMA as the sole source of carbon, energy, and nitrogen by the N-methylglutamate (NMG) pathway. Independent mutations were found in a chromosomal region containing the genes gmaS, mgsABC, and mgdABCD for the three enzymes of the pathway, γ-glutamylmethylamide (GMA) synthetase, NMG synthase, and NMG dehydrogenase, respectively. Reverse transcription-PCR confirmed the operonic structure of the two divergent gene clusters mgsABC-gmaS and mgdABCD and their induction during growth with MMA. The genes mgdABCD and mgsABC were found to be essential for utilization of MMA as a carbon and nitrogen source. The gene gmaS was essential for MMA utilization as a carbon source, but residual growth of mutant DM4gmaS growing with succinate and MMA as a nitrogen source was observed. Plasmid copies of gmaS and the gmaS homolog METDI4690, which encodes a protein 39% identical to GMA synthetase, fully restored the ability of mutants DM4gmaS and DM4gmaSΔmetdi4690 to use MMA as a carbon and nitrogen source. Similarly, chemically synthesized GMA, the product of GMA synthetase, could be used as a nitrogen source for growth in the wild-type strain, as well as in DM4gmaS and DM4gmaSΔmetdi4690 mutants. The NADH:ubiquinone oxidoreductase respiratory complex component NuoG was also found to be essential for growth with MMA as a carbon source. PMID:24682302

Accelerated benzene polycarboxylic acid analysis by liquid chromatography-time-of-flight-mass spectrometry for the determination of petrogenic and pyrogenic carbon.

PubMed

Hindersmann, Benjamin; Achten, Christine

2017-08-11

Pyrogenic carbon species are of particular interest due to their ubiquitous occurrence in the environment and their high sorption capacities for nonpolar organic compounds. It has recently been shown that the analysis of the molecular markers for complex aromatic carbon structures, benzene polycarboxylic acids (BPCA), has a high potential for aid in the identification of different carbon sources. In this study, the first LC method using mass spectrometry (MS) for reliable and accelerated (<24h) quantification of pyrogenic and petrogenic carbon by BPCA analysis has been developed. The main advantage of LC-MS compared to previous methods is the higher sensitivity, which is important if only small sample amounts are available. Sample pre-treatment could be reduced to a minimum. Deuterated phthalic acid was introduced as internal standard due to its structural similarity to BPCA and its lack of occurrence in the environment. Linear quantification with r 2 ≥0997 was accomplished for all BPCA. Method validation showed an excellent quantification reproducibility (mean CV<5%) which is comparable to LC-DAD methods and more reliable than GC-FID measurements (CV 16-23%). In summary, the presented BPCA method is more economic, efficient and presumably attractive to use. Besides reference materials, various pyrogenic and petrogenic samples were analyzed to test if the sources were indicated by BPCA analysis. In addition to pyrogenic carbon, large amounts of petrogenic carbon species can also be present in urban soils and river sediments, especially in mining regions. They also to a large degree consist of aromatic carbon structures and therefore have an impact on source identification by BPCA analysis. Comparison of petrogenic and pyrogenic carbon samples shows similarities in the BPCA concentrations and patterns, in their aromaticity and degree of aromatic condensation. Thus, a differentiation between petrogenic and pyrogenic carbon only by BPCA analysis of samples with unknown carbon sources is not possible. For reliable source identification of the carbon species, the combination with other methods, such as e. g. analysis of polycyclic aromatic hydrocarbons may be successful. Copyright © 2017 Elsevier B.V. All rights reserved.

Different sources and degradation state of dissolved, particulate, and sedimentary organic matter along the Eurasian Arctic coastal margin

NASA Astrophysics Data System (ADS)

Karlsson, Emma; Gelting, Johan; Tesi, Tommaso; van Dongen, Bart; Andersson, August; Semiletov, Igor; Charkin, Alexander; Dudarev, Oleg; Gustafsson, Örjan

2016-06-01

Thawing Arctic permafrost causes massive fluvial and erosional releases of dissolved and particulate organic carbon (DOC and POC) to coastal waters. Here we investigate how different sources and degradation of remobilized terrestrial carbon may affect large-scale carbon cycling, by comparing molecular and dual-isotope composition of waterborne high molecular weight DOC (>1 kD, aka colloidal OC), POC, and sedimentary OC (SOC) across the East Siberian Arctic Shelves. Lignin phenol fingerprints demonstrate a longitudinal trend in relative contribution of terrestrial sources to coastal OC. Wax lipids and cutins were not detected in colloidal organic carbon (COC), in contrast to POC and SOC, suggesting that different terrestrial carbon pools partition into different aquatic carrier phases. The Δ14C signal suggests overwhelmingly contemporary sources for COC, while POC and SOC are dominated by old C from Ice Complex Deposit (ICD) permafrost. Monte Carlo source apportionment (δ13C, Δ14C) constrained that COC was dominated by terrestrial OC from topsoil permafrost (65%) and marine plankton (25%) with smaller contribution ICD and other older permafrost stocks (9%). This distribution is likely a result of inherent compositional matrix differences, possibly driven by organomineral associations. Modern OC found suspended in the surface water may be more exposed to degradation, in contrast to older OC that preferentially settles to the seafloor where it may be degraded on a longer timescale. The different sources which partition into DOC, POC, and SOC appear to have vastly different fates along the Eurasian Arctic coastal margin and may possibly respond on different timescales to climate change.

Measurements of Carbon Dioxide, Carbon Monoxide, and Other Related Tracers at High Spatial and Temporal Resolution in an Urban Environment

NASA Astrophysics Data System (ADS)

Rella, C.; Jacobson, G.

2012-04-01

The ability to quantify the sources and sinks of carbon dioxide on the urban scale is essential for understanding the atmospheric drivers to global climate change. In the 'top-down' approach, overall carbon fluxes are determined by combining remote measurements of carbon dioxide concentrations with complex atmospheric transport models, and these emissions measurements are compared to "bottoms-up" predictions based on detailed inventories of the sources and sinks of carbon, both anthropogenic and biogenic in nature. This approach, which has been proven to be effective at continental scales, becomes challenging to implement at the urban scale, due to poorly understood micrometeorological atmospheric transport models and high variability of the emissions sources in space (e.g., factories, highways, residences) and time (rush hours, factory shifts and shutdowns, residential energy usage variability during the day and over the year). New measurement and analysis techniques are required to make sense of the carbon dioxide signal in cities. Here we present detailed, high spatial- and temporal-resolution greenhouse gas measurements in Silicon Valley in California. The synthesis of two experimental campaigns is presented: real-time measurements from two ten-meter urban 'towers,' and ground-based mobile mapping measurements. Real-time carbon dioxide data from a nine-month period are combined with real-time carbon monoxide, methane, acetylene, and carbon 13 measurements to partition the observed CO2 concentrations between different anthropogenic sectors (e.g., transport, residential) and biogenic sources. The carbon monoxide to carbon dioxide ratio is shown to vary over more than a factor of two from season to season or even from day to night, indicating rapid and frequent shifts in the balance between different carbon dioxide sources. Clear differences are seen between the two urban sites, which are separated by 7 km. Further information is given by the carbon 13 signature and by acetylene, another tracer that provides complementary information to carbon monoxide as an indicator of combustion. In spring and summer, the combined signal of the urban center and the surrounding biosphere and urban green space is explored. These methods show great promise for quantifying and partitioning carbon dioxide emissions in an urban and mixed urban / ecological setting.

Use of a new Trichoderma harzianum strain isolated from the Amazon rainforest with pretreated sugar cane bagasse for on-site cellulase production.

PubMed

Delabona, Priscila da Silva; Farinas, Cristiane Sanchez; da Silva, Mateus Ribeiro; Azzoni, Sindelia Freitas; Pradella, José Geraldo da Cruz

2012-03-01

The on-site production of cellulases is an important strategy for the development of sustainable second-generation ethanol production processes. This study concerns the use of a specific cellulolytic enzyme complex for hydrolysis of pretreated sugar cane bagasse. Glycosyl hydrolases (FPase, xylanase, and β-glucosidase) were produced using a new strain of Trichoderma harzianum, isolated from the Amazon rainforest and cultivated under different conditions. The influence of the carbon source was first investigated using shake-flask cultures. Selected carbon sources were then further studied under different pH conditions using a stirred tank bioreactor. Enzymatic activities up to 121 FPU/g, 8000 IU/g, and 1730 IU/g of delignified steam-exploded bagasse+sucrose were achieved for cellulase, xylanase and β-glucosidase, respectively. This enzymatic complex was used to hydrolyze pretreated sugar cane bagasse. A comparative evaluation, using an enzymatic extract from Trichoderma reesei RUTC30, indicated similar performance of the T. harzianum enzyme complex, being a potential candidate for on-site production of enzymes. Copyright © 2011 Elsevier Ltd. All rights reserved.

Generating a heated fluid using an electromagnetic radiation-absorbing complex

DOE Office of Scientific and Technical Information (OSTI.GOV)

Halas, Nancy J.; Nordlander, Peter; Neumann, Oara

A vessel including a concentrator configured to concentrate electromagnetic (EM) radiation received from an EM radiation source and a complex configured to absorb EM radiation to generate heat. The vessel is configured to receive a cool fluid from the cool fluid source, concentrate the EM radiation using the concentrator, apply the EM radiation to the complex, and transform, using the heat generated by the complex, the cool fluid to the heated fluid. The complex is at least one of consisting of copper nanoparticles, copper oxide nanoparticles, nanoshells, nanorods, carbon moieties, encapsulated nanoshells, encapsulated nanoparticles, and branched nanostructures. Further, the EMmore » radiation is at least one of EM radiation in an ultraviolet region of an electromagnetic spectrum, in a visible region of the electromagnetic spectrum, and in an infrared region of the electromagnetic spectrum.« less

Whole watershed quantification of net carbon fluxes by erosion and deposition within the Christina River Basin Critical Zone Observatory

NASA Astrophysics Data System (ADS)

Aufdenkampe, A. K.; Karwan, D. L.; Aalto, R. E.; Marquard, J.; Yoo, K.; Wenell, B.; Chen, C.

2012-12-01

We have proposed that the rate at which fresh, carbon-free minerals are delivered to and mix with fresh organic matter determines the rate of carbon preservation at a watershed scale (Aufdenkampe et al. 2011). Although many studies have examined the role of erosion in carbon balances, none consider that fresh carbon and fresh minerals interact. We believe that this mechanism may be a dominant sequestration process in watersheds with strong anthropogenic impacts. Our hypothesis - that the rate of mixing fresh carbon with fresh, carbon-free minerals is a primary control on watershed-scale carbon sequestration - is central to our Christina River Basin Critical Zone Observatory project (CRB-CZO, http://www.udel.edu/czo/). The Christina River Basin spans 1440 km2 from piedmont to Atlantic coastal plain physiographic provinces in the states of Pennsylvania and Delaware, and experienced intensive deforestation and land use beginning in the colonial period of the USA. Here we present a synthesis of multi-disciplinary data from the CRB-CZO on materials as they are transported from sapprolite to topsoils to colluvium to suspended solids to floodplains, wetlands and eventually to the Delaware Bay estuary. At the heart of our analysis is a spatially-integrated, flux-weighted comparison of the organic carbon to mineral surface area ratio (OC/SA) of erosion source materials versus transported and deposited materials. Because source end-members - such as forest topsoils, farmed topsoils, gullied subsoils and stream banks - represent a wide distribution of initial, pre-erosion OC/SA, we quantify source contributions using geochemical sediment fingerprinting approaches (Walling 2005). Analytes used for sediment fingerprinting include: total mineral elemental composition (including rare earth elements), fallout radioisotope activity for common erosion tracers (beryllium-7, beryllium-10, lead-210, cesium-137), particle size distribution and mineral specific surface area, in addition to organic carbon and nitrogen content with stable isotope (13C, 15N) and radiocarbon (14C) abundance to quantify OC/SA and organic carbon sources and mean age. We then use multivariate mixing model analysis to quantify the fractional contribution of each source end-member to each sample of suspended or deposited sediments. Last, we calculate a predicted OC/SA based on source end-member mixing and compare to the measured OC/SA to quantify net change in mineral complexed carbon.

Quantifying Sources and Fluxes of Aquatic Carbon in U.S. Streams and Reservoirs Using Spatially Referenced Regression Models

NASA Astrophysics Data System (ADS)

Boyer, E. W.; Smith, R. A.; Alexander, R. B.; Schwarz, G. E.

2004-12-01

Organic carbon (OC) is a critical water quality characteristic in riverine systems that is an important component of the aquatic carbon cycle and energy balance. Examples of processes controlled by OC interactions are complexation of trace metals; enhancement of the solubility of hydrophobic organic contaminants; formation of trihalomethanes in drinking water; and absorption of visible and UV radiation. Organic carbon also can have indirect effects on water quality by influencing internal processes of aquatic ecosystems (e.g. photosynthesis and autotrophic and heterotrophic activity). The importance of organic matter dynamics on water quality has been recognized, but challenges remain in quantitatively addressing OC processes over broad spatial scales in a hydrological context. In this study, we apply spatially referenced watershed models (SPARROW) to statistically estimate long-term mean-annual rates of dissolved- and total- organic carbon export in streams and reservoirs across the conterminous United States. We make use of a GIS framework for the analysis, describing sources, transport, and transformations of organic matter from spatial databases providing characterizations of climate, land use, primary productivity, topography, soils, and geology. This approach is useful because it illustrates spatial patterns of organic carbon fluxes in streamflow, highlighting hot spots (e.g., organic-rich environments in the southeastern coastal plain). Further, our simulations provide estimates of the relative contributions to streams from allochthonous and autochthonous sources. We quantify surface water fluxes of OC with estimates of uncertainty in relation to the overall US carbon budget; our simulations highlight that aquatic sources and sinks of OC may be a more significant component of regional carbon cycling than was previously thought. Further, we are using our simulations to explore the potential role of climate and other changes in the terrestrial environment on OC fluxes in aquatic systems.

Summary of Carbon Storage Incentives and Potential Legislation: East Sub-Basin Project Task 3.1 Business and Financial Case Study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trabucchi, Chiara

The CarbonSAFE Illinois – East Sub-Basin project is conducting a pre-feasibility assessment for commercial-scale CO2 geological storage complexes. The project aims to identify sites capable of storing more than 50 million tons of industrially-sourced CO2. To support the business development assessment of the economic viability of potential sites in the East Sub-Basin and explore conditions under which a carbon capture and storage (CCS) project therein might be revenue positive, this document provides a summary of carbon storage incentives and legislation of potential relevance to the project.

EXPERIMENTS AT THE INTERFACE OF CARBON PARTICLE CHEMISTRY AND TOXCIOLOGY

EPA Science Inventory

Air pollution includes a complex mixture of carbonaceous gases and particles emitted from multiple anthropogenic, biogenic, and biomass burning sources, and also includes secondary organic components that form during atmospheric aging of these emissions. Exposure to these mixture...

In silico carbon molecular beam epitaxial growth of graphene on the h-BN substrate: carbon source effect on van der Waals epitaxy

NASA Astrophysics Data System (ADS)

Lee, Jonghoon; Varshney, Vikas; Park, Jeongho; Farmer, Barry L.; Roy, Ajit K.

2016-05-01

Against the presumption that hexagonal boron-nitride (h-BN) should provide an ideal substrate for van der Waals (vdW) epitaxy to grow high quality graphene films, carbon molecular beam epitaxy (CMBE) techniques using solid carbon sublimation have reported relatively poor quality of the graphene. In this article, the CMBE growth of graphene on the h-BN substrate is numerically studied in order to identify the effect of the carbon source on the quality of the graphene film. The carbon molecular beam generated by the sublimation of solid carbon source materials such as graphite and glassy carbon is mostly composed of atomic carbon, carbon dimers and carbon trimers. Therefore, the graphene film growth becomes a complex process involving various deposition characteristics of a multitude of carbon entities. Based on the study of surface adsorption and film growth characteristics of these three major carbon entities comprising graphite vapour, we report that carbon trimers convey strong traits of vdW epitaxy prone to high quality graphene growth, while atomic carbon deposition is a surface-reaction limited process accompanied by strong chemisorption. The vdW epitaxial behaviour of carbon trimers is found to be substantial enough to nucleate and develop into graphene like planar films within a nanosecond of high flux growth simulation, while reactive atomic carbons tend to impair the structural integrity of the crystalline h-BN substrate upon deposition to form an amorphous interface between the substrate and the growing carbon film. The content of reactive atomic carbons in the molecular beam is suspected to be the primary cause of low quality graphene reported in the literature. A possible optimization of the molecular beam composition towards the synthesis of better quality graphene films is suggested.Against the presumption that hexagonal boron-nitride (h-BN) should provide an ideal substrate for van der Waals (vdW) epitaxy to grow high quality graphene films, carbon molecular beam epitaxy (CMBE) techniques using solid carbon sublimation have reported relatively poor quality of the graphene. In this article, the CMBE growth of graphene on the h-BN substrate is numerically studied in order to identify the effect of the carbon source on the quality of the graphene film. The carbon molecular beam generated by the sublimation of solid carbon source materials such as graphite and glassy carbon is mostly composed of atomic carbon, carbon dimers and carbon trimers. Therefore, the graphene film growth becomes a complex process involving various deposition characteristics of a multitude of carbon entities. Based on the study of surface adsorption and film growth characteristics of these three major carbon entities comprising graphite vapour, we report that carbon trimers convey strong traits of vdW epitaxy prone to high quality graphene growth, while atomic carbon deposition is a surface-reaction limited process accompanied by strong chemisorption. The vdW epitaxial behaviour of carbon trimers is found to be substantial enough to nucleate and develop into graphene like planar films within a nanosecond of high flux growth simulation, while reactive atomic carbons tend to impair the structural integrity of the crystalline h-BN substrate upon deposition to form an amorphous interface between the substrate and the growing carbon film. The content of reactive atomic carbons in the molecular beam is suspected to be the primary cause of low quality graphene reported in the literature. A possible optimization of the molecular beam composition towards the synthesis of better quality graphene films is suggested. Electronic supplementary information (ESI) available: Three movie files: 3mer-physorption.mpg and 3mer-chemisorption.mpg feature examples of the adsorption state sampling of a carbon trimer on the heated h-BN substrate as mentioned in the ``Single Molecule Adsorption Study'' section. In 3mer-film-growth.mpg, an instance of honey comb formation during the initial phase of graphene growth simulation using a carbon trimer beam is captured. An initially sp hybridized carbon atom (red colored) becomes sp2 hybridized as a result of additional covalent bonding with the impinging carbon trimer. As the bond angle around the red carbon changes from 180 degree (sp) to 120 degree (sp2), nearby carbon atoms enclose to form a hexagon structure composed of 6 carbon atoms. See DOI: 10.1039/c6nr01396a

DISCOVERY OF THE SECOND WARM CARBON-CHAIN-CHEMISTRY SOURCE, IRAS15398 - 3359 IN LUPUS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sakai, Nami; Yamamoto, Satoshi; Sakai, Takeshi

2009-05-20

We have conducted a search for carbon-chain molecules toward 16 protostars with the Mopra 22 m and Nobeyama 45 m telescopes, and have detected high excitation lines from several species, such as C{sub 4}H (N = 9-8), C{sub 4}H{sub 2}(J = 10{sub 0,10}-9{sub 0,9}), CH{sub 3}CCH(J = 5-4, K = 2), and HC{sub 5}N(J = 32-31), toward the low-mass protostar, IRAS15398 - 3359 in Lupus. The C{sub 4}H line is as bright as 2.4 K measured with the Nobeyama 45 m telescope. The kinetic temperature is derived to be 12.6 {+-} 1.5 K from the K = 1 and Kmore » = 2 lines of CH{sub 3}CCH. These results indicate that the carbon-chain molecules exist in a region of warm and dense gas near the protostar. The observed features are similar to those found toward IRAS04368+2557 in L1527, which shows warm carbon-chain chemistry (WCCC). In WCCC, carbon-chain molecules are produced efficiently by the evaporation of CH{sub 4} from the grain mantles in a lukewarm region near the protostar. Our data clearly indicate that WCCC is no longer specific to L1527, but occurs in IRAS15398 - 3359. In addition, we draw attention to a remarkable contrast between WCCC and hot corino chemistry in low-mass star-forming regions. Carbon-chain molecules are deficient in hot corino sources like NGC1333 IRAS4B, whereas complex organic molecules seem to be less abundant in the WCCC sources. A possible origin for such source-to-source chemical variations is suggested to arise from the timescale of the starless-core phase in each source. If this is the case, the chemical composition provides an important clue to explore the variation of star formation processes between sources and/or molecular clouds.« less

Elucidating the fate, transport and processes controlling carbon on the landscape: Biogeochemistry tools for the 21st century

NASA Astrophysics Data System (ADS)

McFarlane, K. J.; Keiluweit, M.; Nico, P. S.; Ognibene, T.; Mayali, X.; Nuccio, E.; Weber, P. K.; Pett-Ridge, J.; Guilderson, T. P.

2013-12-01

Globally, more carbon is stored belowground as soil organic matter than in terrestrial vegetation and the atmosphere combined. A critical scientific question is how soils serve as sources and sinks for atmospheric carbon dioxide (CO2) and how these sinks will evolve with expected changes in atmospheric CO2 concentrations, climate, and land-use. Carbon initially enters belowground soil pools as plant detritus, roots, and root exudates. Once in the soil, this organic matter serves as a substrate for decomposer organisms including soil animals, bacteria, and fungi. Most of this carbon is consumed and respired as CO2, but some is converted to microbial biomass and byproducts, which may leave the soil as dissolved organic carbon, be used as a substrate by other microbes, or be stabilized within the soil mineral matrix. Mechanisms that result in the stabilization of soils include: climate stabilization, physical protection within aggregates and organo-mineral complexes, and protection of potential substrates due to physiochemical barriers. These processes, which span broad temporal and spatial scales, are poorly constrained in many dynamic land surface models. At LLNL, we have developed a suite of analytical tools that allow us to follow the movement of carbon at the cell to landscape scale, including: ';Chip-SIP', ';STXM-SIMS', and new sample interfaces for accelerator mass spectrometry (AMS). Experiments, field-based and in vivo, allow us to further the mechanistic understanding of factors that control the fate, transport, and sequestration potential of belowground carbon. The Chip-SIP approach allows us to interrogate which microbial species in a complex community incorporate specific substrates (e.g. cellulose) in order to understand the production of biofuels and better elucidate energy and carbon transfers in wetlands and soils. To disentangle the complex interactions at soil-microbial-film-mineral interfaces with minimal disruption we are using a combination of high-resolution microspectroscopy (STXM-NEXAFS), electron microscopy (SEM), and nano-scale imaging mass spectrometry (nanoSIMS) collectively known as STXM-SIMS. This approach allows us to track labeled litter, exudates and microbial necromass onto microaggregate surfaces and elucidate how organic matter source and environmental conditions influences the physical and molecular fate of soil organic matter. Isotopic characterization (14C, 13C, 2H) of CH4, CO2, dissolved organic carbon (DOC) and physical sources of carbon provide the mechanistic fingerprints of the biogeochemical pathways that cycle carbon through the landscape. Building on our expertise in accelerator mass spectrometry (AMS), we are developing methods for 'direct injection' of CO2 for AMS-14C analyses. Our initial focus has been on a liquid-sample (HPLC) sample interface. The ability to handle liquid samples and continuous flows of liquid will enable more widespread and routine use of AMS in biological and environmental applications. Applied examples of these novel techniques, addressing critical questions in the biogeosciences, will be presented.

Sources, Ages, and Alteration of Organic Matter in Estuaries.

PubMed

Canuel, Elizabeth A; Hardison, Amber K

2016-01-01

Understanding the processes influencing the sources and fate of organic matter (OM) in estuaries is important for quantifying the contributions of carbon from land and rivers to the global carbon budget of the coastal ocean. Estuaries are sites of high OM production and processing, and understanding biogeochemical processes within these regions is key to quantifying organic carbon (Corg) budgets at the land-ocean margin. These regions provide vital ecological services, including nutrient filtration and protection from floods and storm surge, and provide habitat and nursery areas for numerous commercially important species. Human activities have modified estuarine systems over time, resulting in changes in the production, respiration, burial, and export of Corg. Corg in estuaries is derived from aquatic, terrigenous, and anthropogenic sources, with each source exhibiting a spectrum of ages and lability. The complex source and age characteristics of Corg in estuaries complicate our ability to trace OM along the river-estuary-coastal ocean continuum. This review focuses on the application of organic biomarkers and compound-specific isotope analyses to estuarine environments and on how these tools have enhanced our ability to discern natural sources of OM, trace their incorporation into food webs, and enhance understanding of the fate of Corg within estuaries and their adjacent waters.

Alternative industrial carbon emissions benchmark based on input-output analysis

NASA Astrophysics Data System (ADS)

Han, Mengyao; Ji, Xi

2016-12-01

Some problems exist in the current carbon emissions benchmark setting systems. The primary consideration for industrial carbon emissions standards highly relate to direct carbon emissions (power-related emissions) and only a portion of indirect emissions are considered in the current carbon emissions accounting processes. This practice is insufficient and may cause double counting to some extent due to mixed emission sources. To better integrate and quantify direct and indirect carbon emissions, an embodied industrial carbon emissions benchmark setting method is proposed to guide the establishment of carbon emissions benchmarks based on input-output analysis. This method attempts to link direct carbon emissions with inter-industrial economic exchanges and systematically quantifies carbon emissions embodied in total product delivery chains. The purpose of this study is to design a practical new set of embodied intensity-based benchmarks for both direct and indirect carbon emissions. Beijing, at the first level of carbon emissions trading pilot schemes in China, plays a significant role in the establishment of these schemes and is chosen as an example in this study. The newly proposed method tends to relate emissions directly to each responsibility in a practical way through the measurement of complex production and supply chains and reduce carbon emissions from their original sources. This method is expected to be developed under uncertain internal and external contexts and is further expected to be generalized to guide the establishment of industrial benchmarks for carbon emissions trading schemes in China and other countries.

A simple object-oriented and open-source model for scientific and policy analyses of the global climate system – Hector v1.0

DOE PAGES

Hartin, Corinne A.; Patel, Pralit L.; Schwarber, Adria; ...

2015-04-01

Simple climate models play an integral role in the policy and scientific communities. They are used for climate mitigation scenarios within integrated assessment models, complex climate model emulation, and uncertainty analyses. Here we describe Hector v1.0, an open source, object-oriented, simple global climate carbon-cycle model. This model runs essentially instantaneously while still representing the most critical global-scale earth system processes. Hector has a three-part main carbon cycle: a one-pool atmosphere, land, and ocean. The model's terrestrial carbon cycle includes primary production and respiration fluxes, accommodating arbitrary geographic divisions into, e.g., ecological biomes or political units. Hector actively solves the inorganicmore » carbon system in the surface ocean, directly calculating air–sea fluxes of carbon and ocean pH. Hector reproduces the global historical trends of atmospheric [CO 2], radiative forcing, and surface temperatures. The model simulates all four Representative Concentration Pathways (RCPs) with equivalent rates of change of key variables over time compared to current observations, MAGICC (a well-known simple climate model), and models from the 5th Coupled Model Intercomparison Project. Hector's flexibility, open-source nature, and modular design will facilitate a broad range of research in various areas.« less

Novel synthesis of highly durable and active Pt catalyst encapsulated in nitrogen containing carbon for polymer electrolyte membrane fuel cell

NASA Astrophysics Data System (ADS)

Lee, Hyunjoon; Sung, Yung-Eun; Choi, Insoo; Lim, Taeho; Kwon, Oh Joong

2017-09-01

Novel synthesis of a Pt catalyst encapsulated in a N-containing carbon layer for use in a polymer electrolyte membrane fuel cell is described in this study. A Pt-aniline complex, formed by mixing Pt precursor and aniline monomer, was used as the source of Pt, C, and N. Heat treatment of the Pt-aniline complex with carbon black yielded 5 nm Pt nanoparticles encapsulated by a N-containing carbon layer originating from aniline carbonization. The synthesized Pt catalyst exhibited higher mass specific activity to oxygen reduction reaction than that shown by conventional Pt/C catalyst because pyridinic N with graphitic carbon in the carbon layer provided active sites for oxygen reduction reaction in addition to those provided by Pt. In single cell testing, initial performance of the synthesized catalyst was limited because the thick catalyst layer increased resistance related to mass transfer. However, it was observed that the carbon layer successfully prevented Pt nanoparticles from growing via agglomeration and Ostwald ripening under fuel cell operation, thereby improving durability. Furthermore, a mass specific performance of the synthesized catalyst higher than that of a conventional Pt/C catalyst was achieved by modifying the synthesized catalyst's layer thickness.

Nitrogen-doped carbon capsules via poly(ionic liquid)-based layer-by-layer assembly.

PubMed

Zhao, Qiang; Fellinger, Tim-Patrick; Antonietti, Markus; Yuan, Jiayin

2012-07-13

Layer-by-layer (LbL) assembly technique is applied for the first time for the preparation of nitrogen-doped carbon capsules. This approach uses colloid silica as template and two polymeric deposition components, that is, poly(ammonium acrylate) and a poly (ionic liquid) poly(3-cyanomethyl-1-vinylimidazolium bromide), which acts as both the carbon precursor and nitrogen source. Nitrogen-doped carbon capsules are prepared successfully by polymer wrapping, subsequent carbonization and template removal. The as-synthesized carbon capsules contain ≈7 wt% of nitrogen and have a structured specific surface area of 423 m(2) g(-1). Their application as supercapacitor has been briefly introduced. This work proves that LbL assembly methodology is available for preparing carbon structures of complex morphology. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Impact of bubble size on growth and CO2 uptake of Arthrospira (Spirulina) platensis KMMCC CY-007.

PubMed

Kim, Kisok; Choi, Jaeho; Ji, Yosep; Park, Soyoung; Do, Hyungki; Hwang, Cherwon; Lee, Bongju; Holzapfel, Wilhelm

2014-10-01

Optimisation of cyanobacterial cell productivity should consider the key factors light cycle and carbon source. We studied the influence of CO2 bubble size on carbon uptake and fixation, on basis of mRNA expression levels in Arthrospira platensis KMMCC CY-007 at 30°C (light intensity: 40μmolm(-2)s(-1); 1% CO2). Growth rate, carbon fixation and lipid accumulation were examined over 7days under fine bubble (FB) (100μm Ø) bulk bubble (BB) (5000μm Ø) and non-CO2 (NB) aeration. The low affinity CO2 uptake mRNA (NDH-I4 complex) was stronger expressed than the high affinity NDH-I3 complex (bicA and sbtA) under 1% CO2 and FB conditions, with no expression of bicA1 and sbtA1 after 4days. The high affinity CO2 uptake mRNA levels corresponded to biomass, carbon content and lipid accumulation, and increase in NDH-I3 complex (9.72-fold), bicA (5.69-fold), and sbtA (10.61-fold), compared to NB, or BB conditions. Copyright © 2014 Elsevier Ltd. All rights reserved.

Some chemical aspects of diagenetic carbonates from the Miocene of Sitakund, Bangladesh

DOE Office of Scientific and Technical Information (OSTI.GOV)

Akhter, S.H.; Chowdhury, S.Q.; Kandaker, N.I.

1990-05-01

A preliminary chemical and petrological study was done of the Miocene limestone and its comparison with surrounding and overlying marine shales. The material for these studies was obtained from the Miocene Surma sediments exposed in Sitakund region, Cluttagong, Bangladesh. These limestones occur in a predominantly marine shale sequence and show an apparent angular structural relationship with respect to the host marine shales. Three types of carbonates are recognized: banded limestone, dark laminated limestone, and argillaceous limestone. These are devoid of any skeletal remains and often show recrystallization phenomena. Carbonate mineral phases included calcite, aragonite, dolomite, and more rarely magnesite andmore » ankerite. Noncarbonate fraction shows quartz, although very fine grained, is intricately intergrown, indicating that it is at least recrystallized, if not authigenic. Petrographic study of these carbonates show a great variability in terms of texture and composition and suggest a complex multistep and presumably continuous diagenesis. Relatively high REE (rare earth elements) abundances in these carbonates are most likely due to diagenesis and incorporation of mobile REE from local detrital phases into diagenetic carbonates. The anomalously low abundances of cerium in all the carbonates indicates a predominantly marine source for the REE. Recrystallization of carbonate resulted in the extensive exchange of Sr and O between carbonate and diagenetic fluid, the latter being low in REE/Ca ratios. Associated marine shales have quite dissimilar trace-element signatures. This may reflect uncommon crustal sources of REE for the carbonates and clastics. The enrichment of Ni and Zn in marine shales are related to the proximality of local bedrock source areas and clay minerals in the marine sediments.« less

Adaptive data-driven models for estimating carbon fluxes in the Northern Great Plains

USGS Publications Warehouse

Wylie, B.K.; Fosnight, E.A.; Gilmanov, T.G.; Frank, A.B.; Morgan, J.A.; Haferkamp, Marshall R.; Meyers, T.P.

2007-01-01

Rangeland carbon fluxes are highly variable in both space and time. Given the expansive areas of rangelands, how rangelands respond to climatic variation, management, and soil potential is important to understanding carbon dynamics. Rangeland carbon fluxes associated with Net Ecosystem Exchange (NEE) were measured from multiple year data sets at five flux tower locations in the Northern Great Plains. These flux tower measurements were combined with 1-km2 spatial data sets of Photosynthetically Active Radiation (PAR), Normalized Difference Vegetation Index (NDVI), temperature, precipitation, seasonal NDVI metrics, and soil characteristics. Flux tower measurements were used to train and select variables for a rule-based piece-wise regression model. The accuracy and stability of the model were assessed through random cross-validation and cross-validation by site and year. Estimates of NEE were produced for each 10-day period during each growing season from 1998 to 2001. Growing season carbon flux estimates were combined with winter flux estimates to derive and map annual estimates of NEE. The rule-based piece-wise regression model is a dynamic, adaptive model that captures the relationships of the spatial data to NEE as conditions evolve throughout the growing season. The carbon dynamics in the Northern Great Plains proved to be in near equilibrium, serving as a small carbon sink in 1999 and as a small carbon source in 1998, 2000, and 2001. Patterns of carbon sinks and sources are very complex, with the carbon dynamics tilting toward sources in the drier west and toward sinks in the east and near the mountains in the extreme west. Significant local variability exists, which initial investigations suggest are likely related to local climate variability, soil properties, and management.

Ligand extraction of rare earth elements from aquifer sediments: Implications for rare earth element complexation with organic matter in natural waters

NASA Astrophysics Data System (ADS)

Tang, Jianwu; Johannesson, Karen H.

2010-12-01

The ability of organic matter as well as carbonate ions to extract rare earth elements (REEs) from sandy sediments of a Coastal Plain aquifer was investigated for unpurified organic matter from different sources (i.e., Mississippi River natural organic matter, Aldrich humic acid, Nordic aquatic fulvic acid, Suwannee River fulvic acid, and Suwannee River natural organic matter) and for extraction solutions containing weak (i.e., CH 3COO -) or strong (i.e., CO32-) ligands. The experimental results indicate that, in the absence of strong REE complexing ligands in solution, the amount of REEs released from the sand is small and the fractionation pattern of the released REEs appears to be controlled by the surface stability constants for REE sorption with Fe(III) oxides/oxyhydroxides. In the presence of strong solution complexing ligands, however, the amount and the fractionation pattern of the released REEs reflect the strength and variation of the stability constants of the dominant aqueous REE species across the REE series. The varying amount of REEs extracted by the different organic matter employed in the experiments indicates that organic matter from different sources has different complexing capacity for REEs. However, the fractionation pattern of REEs extracted by the various organic matter used in our experiments is remarkable consistent, being independent of the source and the concentration of organic matter used, as well as solution pH. Because natural aquifer sand and unpurified organic matter were used in our experiments, our experimental conditions are more broadly similar to natural systems than many previous laboratory experiments of REE-humic complexation that employed purified humic substances. Our results suggest that the REE loading effect on REE-humic complexation is negligible in natural waters as more abundant metal cations (e.g., Fe, Al) out-compete REEs for strong binding sites on organic matter. More specifically, our results indicate that REE complexation with organic matter in natural waters is dominated by REE binding to weak sites on dissolved organic matter, which subsequently leads to a middle REE (MREE: Sm-Ho)-enriched fractionation pattern. The experiments also indicate that carbonate ions may effectively compete with fulvic acid in binding with dissolved REEs, but cannot out compete humic acids for REEs. Therefore, in natural waters where low molecular weight (LMW) dissolved organic carbon (DOC) is the predominant form of DOC (e.g., lower Mississippi River water), REEs occur as "truly" dissolved species by complexing with carbonate ions as well as FA, resulting in heavy REE (HREE: Er-Lu)-enriched shale-normalized fractionation patterns. Whereas, in natural terrestrial waters where REE speciation is dominated by organic complexes with high molecular weight DOC (e.g., "colloidal" HA), only MREE-enriched fractionation patterns will be observed because the more abundant, weak sites preferentially complex MREEs relative to HREEs and light REEs (LREEs: La-Nd).

Synthesis of highly aligned carbon nanotubes by one-step liquid-phase process: Effects of carbon sources on morphology of carbon nanotubes

NASA Astrophysics Data System (ADS)

Yamagiwa, Kiyofumi; Kuwano, Jun

2017-06-01

This paper describes a unique and innovative synthesis technique for carbon nanotubes (CNTs) by a one-step liquid-phase process under ambient pressure. Vertically aligned multi-walled CNT arrays with a maximum height of 100 µm are prepared on stainless steel substrates, which are submerged and electrically heated in straight-chain primary alcohols with n C = 1-4 (n C: number of C atoms in the molecule) containing an appropriate amount of cobalt-based organometallic complex as a catalyst precursor. Structural isomers of butanol were also used for the synthesis to examine the effects of structural factors on the morphology of the deposited products. Notably, 2-methyl-2-propanol, which is a tertiary alcohol, produced only a small amount of low-crystallinity carbonaceous deposits, whereas vertically aligned CNTs were grown from the other isomers of butanol. These results suggest that the presence or absence of β-hydrogen in the molecular structure is a key factor for understanding the dissociation behavior of the carbon source molecules on the catalyst.

Multiple Phosphatases Regulate Carbon Source-Dependent Germination and Primary Metabolism in Aspergillus nidulans

PubMed Central

de Assis, Leandro José; Ries, Laure Nicolas Annick; Savoldi, Marcela; Dinamarco, Taisa Magnani; Goldman, Gustavo Henrique; Brown, Neil Andrew

2015-01-01

Aspergillus nidulans is an important mold and a model system for the study of fungal cell biology. In addition, invasive A. nidulans pulmonary infections are common in humans with chronic granulomatous disease. The morphological and biochemical transition from dormant conidia into active, growing, filamentous hyphae requires the coordination of numerous biosynthetic, developmental, and metabolic processes. The present study exhibited the diversity of roles performed by seven phosphatases in regulating cell cycle, development, and metabolism in response to glucose and alternative carbon sources. The identified phosphatases highlighted the importance of several signaling pathways regulating filamentous growth, the action of the pyruvate dehydrogenase complex as a metabolic switch controlling carbon usage, and the identification of the key function performed by the α-ketoglutarate dehydrogenase during germination. These novel insights into the fundamental roles of numerous phosphatases in germination and carbon sensing have provided new avenues of research into the identification of inhibitors of fungal germination, with implications for the food, feed, and pharmaceutical industries. PMID:25762568

Recycled diesel carbon nanoparticles for nanostructured battery anodes

NASA Astrophysics Data System (ADS)

Chen, Yuming; Liu, Chang; Sun, Xiaoxuan; Ye, Han; Cheung, Chunshun; Zhou, Limin

2015-02-01

Considerable attention has been devoted to using rational nanostructure design to address critical carbonaceous anode material issues for next-generation lithium-ion batteries (LIBs). However, the fabrication of nanostructured carbonaceous anode materials often involves complex processes and expensive starting materials. Diesel engine is an important source of nanostructured carbon particles with diameters ranging 20 nm-60 nm suspended in air, resulting in a serious scourge of global climate and a series of diseases such as lung cancer, asthma, and cardiovascular disease. Here, we show that diesel carbon nanoparticles collected from diesel engines can be chemically activated to create a porous structure. The resulting nanostructured carbon electrodes have a high specific capacity of 936 mAh g-1 after 40 cycles at 0.05 A/g, and excellent cycle stability while retaining a capacity of ∼210 mAh g-1 after 1200 cycles at 5 A/g. As recycled diesel carbon nanoparticles are readily available due to the several billion tons of diesel fuel consumed every year by diesel engines, their use represents an exciting source for nanostructured carbonaceous anode materials for high-performance LIBs and improves our environment and health.

KSC-2014-3015

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the payload fairing for NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The fairing will soon be used to encapsulate the satellite atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

KSC-2014-2994

NASA Image and Video Library

2014-06-16

VANDENBERG AIR FORCE BASE, Calif. – A flurry of activity surrounds NASA's Orbiting Carbon Observatory-2, or OCO-2, as final preparations are made to transport the spacecraft from the Astrotech Payload Processing Facility to Space Launch Complex 2 on Vandenberg Air Force Base in California for launch. Launch aboard a United Launch Alliance Delta II rocket is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

KSC-2014-3098

NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – The mobile service tower has been rolled back from the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, on Space Launch Complex 2 at Vandenberg Air Force Base in California, one of the final steps leading up to launch. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3017

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the payload fairing for NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The fairing will soon be used to encapsulate the satellite atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

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NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – From left, Betsy Edwards, Orbiting Carbon Observatory-2 project executive at NASA Headquarters Tim Dunn, launch manager for NASA's Launch Services Program and Vernon Thorp, United Launch Alliance program manager for NASA Missions, participate in a prelaunch news conference at Vandenberg Air Force Base in California prior to the launch of the observatory, or OCO-2. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

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NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The task is taking place prior to encapsulation in its payload fairing atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

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NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – From left, David Crisp, Orbiting Carbon Observatory-2, or OCO-2, science team leader at NASA's Jet Propulsion Laboratory, or JPL, and Annmarie Eldering, OCO-2 deputy project scientist at JPL, participate in a mission science briefing at Vandenberg Air Force Base in California prior to the launch of the observatory. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

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NASA Image and Video Library

2014-06-21

VANDENBERG AIR FORCE BASE, Calif. – Half of the Delta II payload fairing for NASA's Orbiting Carbon Observatory-2, or OCO-2, is secured around the spacecraft in the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California. The fairing will protect OCO-2 during launch aboard a United Launch Alliance Delta II rocket, scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

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NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, stands ready for launch aboard a United Launch Alliance Delta II rocket following rollback of the mobile service tower on Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

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NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The task is taking place prior to encapsulation in its payload fairing atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

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NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the payload fairing for NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The fairing will soon be used to encapsulate the satellite atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

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NASA Image and Video Library

2014-06-21

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, is in position in the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California, ready for encapsulation into the Delta II payload fairing. The fairing will protect OCO-2 during launch aboard a United Launch Alliance Delta II rocket, scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

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NASA Image and Video Library

2014-06-21

VANDENBERG AIR FORCE BASE, Calif. – The half-sections of the Delta II payload fairing roll into position to surround NASA's Orbiting Carbon Observatory-2, or OCO-2, in the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California. The fairing will protect OCO-2 during launch aboard a United Launch Alliance Delta II rocket, scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

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NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – At Vandenberg Air Force Base in California, the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, awaits loading of its cryogenic propellants following rollback of the mobile service tower on Space Launch Complex 2. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

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NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – Final preparations are underway at Space Launch Complex 2 on Vandenberg Air Force Base in California for liftoff of NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard a United Launch Alliance Delta II rocket. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

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NASA Image and Video Library

2014-06-16

VANDENBERG AIR FORCE BASE, Calif. – Technicians clean some of the hardware for NASA's Orbiting Carbon Observatory-2 mission, or OCO-2, in the Astrotech Payload Processing Facility on Vandenberg Air Force Base in California. The spacecraft soon will be transported to Space Launch Complex 2 for encapsulation in the Delta II payload fairing. Launch aboard a United Launch Alliance Delta II rocket is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

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NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – The mobile service tower on Space Launch Complex 2 at Vandenberg Air Force Base in California rolls away from the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

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NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The task is taking place prior to encapsulation in its payload fairing atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

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NASA Image and Video Library

2014-06-21

VANDENBERG AIR FORCE BASE, Calif. – Preparations are underway to complete the encapsulation of NASA's Orbiting Carbon Observatory-2, or OCO-2, into the Delta II payload fairing in the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California. The fairing will protect OCO-2 during launch aboard a United Launch Alliance Delta II rocket, scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

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NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – Preparations are underway to pick up the countdown to liftoff of the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, on Space Launch Complex 2 at Vandenberg Air Force Base in California. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

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NASA Image and Video Library

2014-06-16

VANDENBERG AIR FORCE BASE, Calif. – Technicians clean some of the hardware for NASA's Orbiting Carbon Observatory-2 mission, or OCO-2, in the Astrotech Payload Processing Facility on Vandenberg Air Force Base in California to ensure that the spacecraft is not contaminated prior to its transport to Space Launch Complex 2 for enclosure in the Delta II payload fairing. Launch aboard a United Launch Alliance Delta II rocket is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

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NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The task is taking place prior to encapsulation in its payload fairing atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

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NASA Image and Video Library

2014-06-21

VANDENBERG AIR FORCE BASE, Calif. – Technicians monitor a half-section of the Delta II payload fairing as it is moved toward NASA's Orbiting Carbon Observatory-2, or OCO-2, in the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California. The fairing will protect OCO-2 during launch aboard a United Launch Alliance Delta II rocket, scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

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NASA Image and Video Library

2014-06-21

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, is viewed for the last time in the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California before the Delta II payload fairing encloses it completely for launch. The fairing will protect OCO-2 during launch aboard a United Launch Alliance Delta II rocket, scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

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NASA Image and Video Library

2014-07-02

VANDENBERG AIR FORCE BASE, Calif. – At Space Launch Complex 2 on Vandenberg Air Force Base in California, an exhaust cloud builds around the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, into space. Launch was on schedule at 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/30th Space Communication Squadron

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NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – The mobile service tower on Space Launch Complex 2 at Vandenberg Air Force Base in California begins to roll back from the United Launch Alliance Delta II rocket with NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

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NASA Image and Video Library

2014-06-21

VANDENBERG AIR FORCE BASE, Calif. – The remaining half-section of the Delta II payload fairing moves into place around NASA's Orbiting Carbon Observatory-2, or OCO-2, in the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California. The fairing will protect OCO-2 during launch aboard a United Launch Alliance Delta II rocket, scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

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NASA Image and Video Library

2014-07-02

VANDENBERG AIR FORCE BASE, Calif. – The United Launch Alliance Delta II rocket lifts off through the fog at Space Launch Complex 2 on Vandenberg Air Force Base in California, engines blazing, carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, to orbit. Launch was on schedule at 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/30th Space Communication Squadron

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NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The task is taking place prior to encapsulation in its payload fairing atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

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NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – Final preparations are underway for the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2, aboard a United Launch Alliance Delta II rocket, following rollback of the mobile service tower on Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3019

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The task is taking place prior to encapsulation in its payload fairing atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

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NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – Technicians prepare to roll the mobile service tower away from the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, at Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3004

NASA Image and Video Library

2014-06-21

VANDENBERG AIR FORCE BASE, Calif. – Encapsulation of NASA's Orbiting Carbon Observatory-2, or OCO-2, into the Delta II payload fairing nears completion in the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California. The fairing will protect OCO-2 during launch aboard a United Launch Alliance Delta II rocket, scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

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NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Michael Freilich, director of the Earth Science Division in NASA's Science Mission Directorate, talks with representatives of the news media at Space Launch Complex 2 on Vandenberg Air Force Base in California during activities leading up to the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. Final preparations for launch of OCO-2 at 5:56 a.m. EDT on July 1 aboard a United Launch Alliance Delta II rocket are underway on the pad. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3006

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The task is taking place prior to encapsulation in its payload fairing atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

KSC-2014-3063

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – NASA Administrator Charles Bolden meets with representatives of the news media at Space Launch Complex 2 on Vandenberg Air Force Base in California during activities leading up to the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. Final preparations for launch of OCO-2 at 5:56 a.m. EDT on July 1 aboard a United Launch Alliance Delta II rocket are underway on the pad. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3095

NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, stands ready for launch aboard a United Launch Alliance Delta II rocket following rollback of the mobile service tower on Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3096

NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – The mobile service tower has been rolled back from the United Launch Alliance Delta II rocket carrying NASA's Orbiting Carbon Observatory-2, or OCO-2, on Space Launch Complex 2 at Vandenberg Air Force Base in California, one of the final steps leading up to launch. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-2998

NASA Image and Video Library

2014-06-21

VANDENBERG AIR FORCE BASE, Calif. – Half of the Delta II payload fairing for NASA's Orbiting Carbon Observatory-2, or OCO-2, is positioned around the spacecraft in the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California. The fairing will protect OCO-2 during launch aboard a United Launch Alliance Delta II rocket, scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

KSC-2014-3024

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – In the mobile service tower at Space Launch Complex 2 at Vandenberg Air Force Base in California, technicians are inspecting the payload fairing for NASA's Orbiting Carbon Observatory-2, or OCO-2, satellite. The fairing will soon be used to encapsulate the satellite atop a United Launch Alliance Delta II rocket. Launch is scheduled for 2:56 a.m. PDT 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov Photo credit: NASA/Mark Mackley

KSC-2014-3092

NASA Image and Video Library

2014-07-01

VANDENBERG AIR FORCE BASE, Calif. – NASA's Orbiting Carbon Observatory-2, or OCO-2, awaits launch aboard a United Launch Alliance Delta II rocket inside the mobile service tower on Space Launch Complex 2 on Vandenberg Air Force Base in California. Launch of OCO-2 is scheduled for 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-2995

NASA Image and Video Library

2014-06-21

VANDENBERG AIR FORCE BASE, Calif. – Preparations are underway to encapsulate NASA's Orbiting Carbon Observatory-2, or OCO-2, into the Delta II payload fairing in the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California. The fairing will protect OCO-2 during launch aboard a United Launch Alliance Delta II rocket, scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://oco.jpl.nasa.gov. Photo credit: NASA/30th Space Wing, U.S. Air Force

Numerical simulation of two-dimensional flow over a heated carbon surface with coupled heterogeneous and homogeneous reactions

NASA Astrophysics Data System (ADS)

Johnson, Ryan Federick; Chelliah, Harsha Kumar

2017-01-01

For a range of flow and chemical timescales, numerical simulations of two-dimensional laminar flow over a reacting carbon surface were performed to understand further the complex coupling between heterogeneous and homogeneous reactions. An open-source computational package (OpenFOAM®) was used with previously developed lumped heterogeneous reaction models for carbon surfaces and a detailed homogeneous reaction model for CO oxidation. The influence of finite-rate chemical kinetics was explored by varying the surface temperatures from 1800 to 2600 K, while flow residence time effects were explored by varying the free-stream velocity up to 50 m/s. The reacting boundary layer structure dependence on the residence time was analysed by extracting the ratio of chemical source and species diffusion terms. The important contributions of radical species reactions on overall carbon removal rate, which is often neglected in multi-dimensional simulations, are highlighted. The results provide a framework for future development and validation of lumped heterogeneous reaction models based on multi-dimensional reacting flow configurations.

Molecular Characterization of Hap Complex Components Responsible for Methanol-Inducible Gene Expression in the Methylotrophic Yeast Candida boidinii

PubMed Central

Oda, Saori; Yurimoto, Hiroya; Nitta, Nobuhisa; Sasano, Yu

2015-01-01

We identified genes encoding components of the Hap complex, CbHAP2, CbHAP3, and CbHAP5, as transcription factors regulating methanol-inducible gene expression in the methylotrophic yeast Candida boidinii. We found that the Cbhap2Δ, Cbhap3Δ, and Cbhap5Δ gene-disrupted strains showed severe growth defects on methanol but not on glucose and nonfermentable carbon sources such as ethanol and glycerol. In these disruptants, the transcriptional activities of methanol-inducible promoters were significantly decreased compared to those of the wild-type strain, indicating that CbHap2p, CbHap3p, and CbHap5p play indispensable roles in methanol-inducible gene expression. Further molecular and biochemical analyses demonstrated that CbHap2p, CbHap3p, and CbHap5p localized to the nucleus and bound to the promoter regions of methanol-inducible genes regardless of the carbon source, and heterotrimer formation was suggested to be necessary for binding to DNA. Unexpectedly, distinct from Saccharomyces cerevisiae, the Hap complex functioned in methanol-specific induction rather than glucose derepression in C. boidinii. Our results shed light on a novel function of the Hap complex in methanol-inducible gene expression in methylotrophic yeasts. PMID:25595445

The future of oil: unconventional fossil fuels.

PubMed

Chew, Kenneth J

2014-01-13

Unconventional fossil hydrocarbons fall into two categories: resource plays and conversion-sourced hydrocarbons. Resource plays involve the production of accumulations of solid, liquid or gaseous hydro-carbons that have been generated over geological time from organic matter in source rocks. The character of these hydrocarbons may have been modified subsequently, especially in the case of solids and extra-heavy liquids. These unconventional hydrocarbons therefore comprise accumulations of hydrocarbons that are trapped in an unconventional manner and/or whose economic exploitation requires complex and technically advanced production methods. This review focuses primarily on unconventional liquid hydro-carbons. The future potential of unconventional gas, especially shale gas, is also discussed, as it is revolutionizing the energy outlook in North America and elsewhere.

Molecular-scale characterization of uranium sorption by bone apatite materials for a permeable reactive barrier demonstration

USGS Publications Warehouse

Fuller, C.C.; Bargar, J.R.; Davis, J.A.

2003-01-01

Uranium binding to bone charcoal and bone meal apatite materials was investigated using U LIII-edge EXAFS spectroscopy and synchrotron source XRD measurements of laboratory batch preparations in the absence and presence of dissolved carbonate. Pelletized bone char apatite recovered from a permeable reactive barrier (PRB) at Fry Canyon, UT, was also studied. EXAFS analyses indicate that U(VI) sorption in the absence of dissolved carbonate occurred by surface complexation of U(VI) for sorbed concentrations ??? 5500 ??g U(VI)/g for all materials with the exception of crushed bone char pellets. Either a split or a disordered equatorial oxygen shell was observed, consistent with complexation of uranyl by the apatite surface. A second shell of atoms at a distance of 2.9 A?? was required to fit the spectra of samples prepared in the presence of dissolved carbonate (4.8 mM total) and is interpreted as formation of ternary carbonate complexes with sorbed U(VI). A U-P distance at 3.5-3.6 A?? was found for most samples under conditions where uranyl phosphate phases did not form, which is consistent with monodentate coordination of uranyl by phosphate groups in the apatite surface. At sorbed concentrations ??? 5500 ??g U(VI)/g in the absence of dissolved carbonate, formation of the uranyl phosphate solid phase, chernikovite, was observed. The presence of dissolved carbonate (4.8 mM total) suppressed the formation of chernikovite, which was not detected even with sorbed U(VI) up to 12 300 ??g U(VI)/g in batch samples of bone meal, bone charcoal, and reagent-grade hydroxyapatite. EXAFS spectra of bone char samples recovered from the Fry Canyon PRB were comparable to laboratory samples in the presence of dissolved carbonate where U(VI) sorption occurred by surface complexation. Our findings demonstrate that uranium uptake by bone apatite will probably occur by surface complexation instead of precipitation of uranyl phosphate phases under the groundwater conditions found at many U-contaminated sites.

Model structures amplify uncertainty in predicted soil carbon responses to climate change.

PubMed

Shi, Zheng; Crowell, Sean; Luo, Yiqi; Moore, Berrien

2018-06-04

Large model uncertainty in projected future soil carbon (C) dynamics has been well documented. However, our understanding of the sources of this uncertainty is limited. Here we quantify the uncertainties arising from model parameters, structures and their interactions, and how those uncertainties propagate through different models to projections of future soil carbon stocks. Both the vertically resolved model and the microbial explicit model project much greater uncertainties to climate change than the conventional soil C model, with both positive and negative C-climate feedbacks, whereas the conventional model consistently predicts positive soil C-climate feedback. Our findings suggest that diverse model structures are necessary to increase confidence in soil C projection. However, the larger uncertainty in the complex models also suggests that we need to strike a balance between model complexity and the need to include diverse model structures in order to forecast soil C dynamics with high confidence and low uncertainty.

Qualitative and quantitative assessment of Unresolved Complex Mixture in PM2.5 of Bakersfield, CA.

EPA Science Inventory

The 2010 CalNex (California Nexus) field experiment offered an opportunity for detailed characterization of atmospheric particulate carbon composition and sources in Bakersfield, CA. In the current study, the authors describe and employ a new protocol for reporting unresolved com...

Deconvolving the Fate of Carbon in Coastal Sediments

NASA Astrophysics Data System (ADS)

Van der Voort, Tessa S.; Mannu, Utsav; Blattmann, Thomas M.; Bao, Rui; Zhao, Meixun; Eglinton, Timothy I.

2018-05-01

Coastal oceans play a crucial role in the global carbon cycle, and are increasingly affected by anthropogenic forcing. Understanding carbon cycling in coastal environments is hindered by convoluted sources and myriad processes that vary over a range of spatial and temporal scales. In this study, we deconvolve the complex mosaic of organic carbon manifested in Chinese Marginal Sea (CMS) sediments using a novel numerical clustering algorithm based on 14C and total OC content. Results reveal five regions that encompass geographically distinct depositional settings. Complementary statistical analyses reveal contrasting region-dependent controls on carbon dynamics and composition. Overall, clustering is shown to be highly effective in demarcating areas of distinct organic facies by disentangling intertwined organic geochemical patterns resulting from superimposed effects of OC provenance, reworking and deposition on a shelf region exhibiting pronounced spatial heterogeneity. This information will aid in constraining region-specific budgets of carbon burial and carbon cycle processes.

pyhector: A Python interface for the simple climate model Hector

DOE PAGES

Willner, Sven N.; Hartin, Corinne; Gieseke, Robert

2017-04-01

Here, pyhector is a Python interface for the simple climate model Hector (Hartin et al. 2015) developed in C++. Simple climate models like Hector can, for instance, be used in the analysis of scenarios within integrated assessment models like GCAM1, in the emulation of complex climate models, and in uncertainty analyses. Hector is an open-source, object oriented, simple global climate carbon cycle model. Its carbon cycle consists of a one pool atmosphere, three terrestrial pools which can be broken down into finer biomes or regions, and four carbon pools in the ocean component. The terrestrial carbon cycle includes primary productionmore » and respiration fluxes. The ocean carbon cycle circulates carbon via a simplified thermohaline circulation, calculating air-sea fluxes as well as the marine carbonate system. The model input is time series of greenhouse gas emissions; as example scenarios for these the Pyhector package contains the Representative Concentration Pathways (RCPs)2.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Willner, Sven N.; Hartin, Corinne; Gieseke, Robert

Here, pyhector is a Python interface for the simple climate model Hector (Hartin et al. 2015) developed in C++. Simple climate models like Hector can, for instance, be used in the analysis of scenarios within integrated assessment models like GCAM1, in the emulation of complex climate models, and in uncertainty analyses. Hector is an open-source, object oriented, simple global climate carbon cycle model. Its carbon cycle consists of a one pool atmosphere, three terrestrial pools which can be broken down into finer biomes or regions, and four carbon pools in the ocean component. The terrestrial carbon cycle includes primary productionmore » and respiration fluxes. The ocean carbon cycle circulates carbon via a simplified thermohaline circulation, calculating air-sea fluxes as well as the marine carbonate system. The model input is time series of greenhouse gas emissions; as example scenarios for these the Pyhector package contains the Representative Concentration Pathways (RCPs)2.« less

Complex carbon cycling processes and pathways in a tropical coastal marine environment (Saco do Mamangua, RJ - Brazil)

NASA Astrophysics Data System (ADS)

Giorgioni, M.; Jovane, L.; Millo, C.; Sawakuchi, H. O.; Bertassoli, D. J., Jr.; Gamba Romano, R.; Pellizari, V.; Castillo Franco, D.; Krusche, A. V.

2016-12-01

The Saco do Mamangua is a narrow and elongated gulf located along the southeastern coast of Brazil, in the state of Rio de Janeiro (RJ). It is surrounded by high relieves, which form a peculiar environment called riá, with little river input and limited water exchange with the Atlantic Ocean. These features make the Saco do Mamangua an ideal environment to study sedimentary carbon cycling under well-constrained boundary conditions in order to investigate if tropical coastal environments serve dominantly as potential carbon sinks or sources. In this work we integrate geochemical data from marine sediments and pore waters in the Saco do Mamangua with mapping of benthic microbial communities, in order to unravel the biogeochemical carbon cycling linked to the production of biogenic methane. Our results reveal that carbon cycling occurs in two parallel pathways. The Saco do Mamangua receives organic carbon both by surface runoff and by primary production in the water column. A large part of this organic carbon is buried within the sediment resulting in the production of biogenic methane, which gives rise to methane seepages at the sea floor. These methane seeps sustain methanotrophic microbial communities in the sediment pore water, but also escapes into the atmosphere by ebullition. Consequently, the sediments of Saco do Mamangua acts simultaneously as carbon sink and carbon source. Future work will allow us to accurately quantify the actual carbon fluxes and calculate the net carbon balance in the local environment.

Data on pigments and long-chain fatty compounds identified in Dietzia sp. A14101 grown on simple and complex hydrocarbons

PubMed Central

Hvidsten, Ina; Mjøs, Svein Are; Bødtker, Gunhild; Barth, Tanja

2015-01-01

This data article provides: 1. An overview of tentatively identified long chain compounds in Dietzia sp. A14101 grown on simple and complex hydrocarbons; 2. Preliminary Identification of pigments in bacterial material obtained from incubation with a hydrocarbon (dodecane, n-C12) as the only carbon and energy source; 3. Some pictures to illustrate the cell surface charge test. PMID:26442286

Whole Watershed Quantification of Net Carbon Fluxes by Erosion and Deposition within the Christina River Basin Critical Zone Observatory

NASA Astrophysics Data System (ADS)

Aufdenkampe, A. K.; Karwan, D. L.; Aalto, R. E.; Marquard, J.; Yoo, K.; Wenell, B.; Chen, C.

2013-12-01

We have proposed that the rate at which fresh, carbon-free minerals are delivered to and mix with fresh organic matter determines the rate of carbon preservation at a watershed scale (Aufdenkampe et al. 2011). Although many studies have examined the role of erosion in carbon balances, none consider that fresh carbon and fresh minerals interact. We believe that this mechanism may be a dominant sequestration process in watersheds with strong anthropogenic impacts. Our hypothesis - that the rate of mixing fresh carbon with fresh, carbon-free minerals is a primary control on watershed-scale carbon sequestration - is central to our Christina River Basin Critical Zone Observatory project (CRB-CZO, http://www.udel.edu/czo/). The Christina River Basin spans 1440 km2 from piedmont to Atlantic coastal plain physiographic provinces in the states of Pennsylvania and Delaware, and experienced intensive deforestation and land use beginning in the colonial period of the USA. Here we present a synthesis of multi-disciplinary data from the CRB-CZO on materials as they are transported from sapprolite to topsoils to colluvium to suspended solids to floodplains, wetlands and eventually to the Delaware Bay estuary. At the heart of our analysis is a spatially-integrated, flux-weighted comparison of the organic carbon to mineral surface area ratio (OC/SA) of erosion source materials versus transported and deposited materials. Because source end-members - such as forest topsoils, farmed topsoils, gullied subsoils and stream banks - represent a wide distribution of initial, pre-erosion OC/SA, we quantify source contributions using geochemical sediment fingerprinting approaches (Walling 2005). Analytes used for sediment fingerprinting include: total mineral elemental composition (including rare earth elements), fallout radioisotope activity for common erosion tracers (beryllium-7, beryllium-10, lead-210, cesium-137), particle size distribution and mineral specific surface area, in addition to organic carbon and nitrogen content with stable isotope (13C, 15N) and radiocarbon (14C) abundance to quantify OC/SA and organic carbon sources and mean age. We then use multivariate mixing model analysis to quantify the fractional contribution of each source end-member to each sample of suspended or deposited sediments. Last, we calculate a predicted OC/SA based on source end-member mixing and compare to the measured OC/SA to quantify net change in mineral complexed carbon. Aufdenkampe, A.K. et al. Riverine coupling of biogeochemical cycles between land, oceans, and atmosphere. Frontiers Ecol. Environ. 9, 53-60 (2011). Walling, D. E. Tracing suspended sediment sources in catchments and river systems. Sci. Total Environ. 34, 159-184 (2005).

The VELVET A Orthologue VEL1 of Trichoderma reesei Regulates Fungal Development and Is Essential for Cellulase Gene Expression

PubMed Central

Atanasova, Lea; Fekete, Erzsébet; Paholcsek, Melinda; Sándor, Erzsébet; Aquino, Benigno; Druzhinina, Irina S.; Karaffa, Levente; Kubicek, Christian P.

2014-01-01

Trichoderma reesei is the industrial producer of cellulases and hemicellulases for biorefinery processes. Their expression is obligatorily dependent on the function of the protein methyltransferase LAE1. The Aspergillus nidulans orthologue of LAE1 - LaeA - is part of the VELVET protein complex consisting of LaeA, VeA and VelB that regulates secondary metabolism and sexual as well as asexual reproduction. Here we have therefore investigated the function of VEL1, the T. reesei orthologue of A. nidulans VeA. Deletion of the T. reesei vel1 locus causes a complete and light-independent loss of conidiation, and impairs formation of perithecia. Deletion of vel1 also alters hyphal morphology towards hyperbranching and formation of thicker filaments, and with consequently reduced growth rates. Growth on lactose as a sole carbon source, however, is even more strongly reduced and growth on cellulose as a sole carbon source eliminated. Consistent with these findings, deletion of vel1 completely impaired the expression of cellulases, xylanases and the cellulase regulator XYR1 on lactose as a cellulase inducing carbon source, but also in resting mycelia with sophorose as inducer. Our data show that in T. reesei VEL1 controls sexual and asexual development, and this effect is independent of light. VEL1 is also essential for cellulase gene expression, which is consistent with the assumption that their regulation by LAE1 occurs by the VELVET complex. PMID:25386652

Transcriptional regulation of the protein kinase a subunits in Saccharomyces cerevisiae during fermentative growth.

PubMed

Galello, Fiorella; Pautasso, Constanza; Reca, Sol; Cañonero, Luciana; Portela, Paula; Moreno, Silvia; Rossi, Silvia

2017-12-01

Yeast cells can adapt their growth in response to the nutritional environment. Glucose is the favourite carbon source of Saccharomyces cerevisiae, which prefers a fermentative metabolism despite the presence of oxygen. When glucose is consumed, the cell switches to the aerobic metabolism of ethanol, during the so-called diauxic shift. The difference between fermentative and aerobic growth is in part mediated by a regulatory mechanism called glucose repression. During glucose derepression a profound gene transcriptional reprogramming occurs and genes involved in the utilization of alternative carbon sources are expressed. Protein kinase A (PKA) controls different physiological responses following the increment of cAMP as a consequence of a particular stimulus. cAMP-PKA is one of the major pathways involved in the transduction of glucose signalling. In this work the regulation of the promoters of the PKA subunits during respiratory and fermentative metabolism are studied. It is demonstrated that all these promoters are upregulated in the presence of glycerol as carbon source through the Snf1/Cat8 pathway. However, in the presence of glucose as carbon source, the regulation of each PKA promoter subunits is different and only TPK1 is repressed by the complex Hxk2/Mig1 in the presence of active Snf1. Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

Nitrogen Doped Carbon Nanotubes from Organometallic Compounds: A Review

PubMed Central

Nxumalo, Edward N.; Coville, Neil J.

2010-01-01

Nitrogen doped carbon nanotubes (N-CNTs) have become a topic of increased importance in the study of carbonaceous materials. This arises from the physical and chemical properties that are created when N is embedded in a CNT. These properties include modified chemical reactivity and modified conductivity and mechanical properties. A range of methodologies have been devised to synthesize N-CNTs. One of the procedures uses a floating catalyst in which an organometallic complex is decomposed in the gas phase in the presence of a nitrogen containing reactant to give N-CNTs. Most studies have been limited to ferrocene, ring substituted ferrocene and Fe(CO)5. This review covers the synthesis (and properties) of N-CNTs and other shaped carbon nanomaterials (SCNMs) produced using organometallic complexes. It summarizes the effects that physical parameters such as temperature, pressure, gas flow rates, type and concentration of N source etc. have on the N-CNT type, size and yields as well as the nitrogen content incorporated into the tubes that are produced from organometallic complexes. Proposed growth models for N-CNT synthesis are also reported.

Development of Catalysts and Ligands for Enantioselective Gold Catalysis

PubMed Central

Wang, Yi-Ming; Lackner, Aaron D.; Toste, F. Dean

2014-01-01

CONSPECTUS The use of Au(I) complexes for the catalytic activation of C-C π-bonds has been the subject of intense investigation in the last decade or so. The facile formation of carbon-carbon and carbon-heteroatom bonds facilitated by gold naturally led to efforts to render these transformations enantioselective. Early examples of enantioselective gold-catalyzed transformations have focused on bis(phosphinegold) complexes derived from axially chiral scaffolds. Although these complexes were highly successful in some reactions like cyclopropanation, careful choice of the weakly coordinating ligand (or counterion) was needed to obtain high levels of enantioselectivity for the case of allene hydroamination. These counterion effects led us to use the anion itself as a source of chirality, which was successful in the case of allene hydroalkoxylation. In order to expand the scope of reactions amenable to enantioselective gold catalysis to cycloadditions and other carbocyclization processes, a new class of mononuclear phosphite and phosphoramidite ligands was developed to supplement the previously widely utilized phosphines. Finally carbene ligands, in particular, the acyclic diaminocarbenes, have also been successfully applied to enantioselective transformations. PMID:24228794

Effects of different nitrogen sources on the biogas production - a lab-scale investigation.

PubMed

Wagner, Andreas Otto; Hohlbrugger, Peter; Lins, Philipp; Illmer, Paul

2012-12-20

For anaerobic digestion processes nitrogen sources are poorly investigated although they are known as possible process limiting factors (in the hydrolysis phase) but also as a source for fermentations for subsequent methane production by methanogenic archaea. In the present study different complex and defined nitrogen sources were investigated in a lab-scale experiment in order to study their potential to build up methane. The outcome of the study can be summarised as follows: from complex nitrogen sources yeast extract and casamino acids showed the highest methane production with approximately 600 ml methane per mole of nitrogen, whereas by the use of skim milk no methane production could be observed. From defined nitrogen sources L-arginine showed the highest methane production with almost 1400 ml methane per mole of nitrogen. Moreover it could be demonstrated that the carbon content and therefore C/N-ratio has only minor influence for the methane production from the used substrates. Copyright © 2011 Elsevier GmbH. All rights reserved.

Diagenetic Carbonates Related to Hydrocarbon-rich Fluid Seepage in the Nile Deep Sea Fan (East Mediterranean Sea)

NASA Astrophysics Data System (ADS)

Pierre, C.; Gontharet, S.; Blanc-Valleron, M. M.; Bayon, G.; Dupré, S.; Mascle, J.

2017-12-01

During the NAUTINIL (September-October 2003), MIMES (July 2004), BIONIL (October 2006) and MEDECO2 (November 2007) cruises, coring and submersible dives were realized in the Nile Deep Sea Fan (NDSF) area. Active fluid venting sites were identified by the presence of living benthic organisms and by methane plumes in the bottom waters above the seeping structures. At all sites, hard carbonate crusts cover irregularly the sea floor. The sediments from the venting areas are organic-rich, contain sometimes carbonate concretions and have a strong H2S smell indicative of active sulfate reduction. The mineralogy of carbonate crusts is dominated by aragonite and Mg-calcite; the mineralogy of concretions is more complex, with mixtures of Mg-calcite, dolomite and ankerite. The oxygen and carbon isotopic compositions of the carbonate from crusts and concretions exhibit large variations (-2.8< δ18O ‰ VPDB <+9.5; -42.6< δ13C ‰ VPDB <+22.4). The wide range of δ18O values reflects variable sources of fluids. Most of the authigenic carbonates from the NDSF were precipitated in isotopic equilibrium with the Mediterranean bottom water. The carbonate crusts and concretions from the brine seeps of the north-western NDSF are enriched in 18O indicating that a source of 18O-rich fluids originated from depth. Differently, a few crusts and concretions from the eastern NDSF exhibit relatively low δ18O values, which are due to precipitation at warm temperatures. The very low δ13C values of the diagenetic carbonates indicate that methane and possibly other heavier hydrocarbons were the major source of carbon that was oxidized as bicarbonate mostly through bacterial sulfate reduction coupled with anaerobic methane oxidation within the anoxic sediment. The very positive δ13C values of the diagenetic carbonates from many carbonate concretions are related to the production of 13C-rich CO2 during methanogenesis within the sub-seafloor sediments.

Formate Metabolism in Shewanella oneidensis Generates Proton Motive Force and Prevents Growth without an Electron Acceptor.

PubMed

Kane, Aunica L; Brutinel, Evan D; Joo, Heena; Maysonet, Rebecca; VanDrisse, Chelsey M; Kotloski, Nicholas J; Gralnick, Jeffrey A

2016-04-01

Shewanella oneidensis strain MR-1 is a facultative anaerobe that thrives in redox-stratified environments due to its ability to utilize a wide array of terminal electron acceptors. Conversely, the electron donors utilized by S. oneidensis are more limited and include products of primary fermentation such as lactate, pyruvate, formate, and hydrogen. Lactate, pyruvate, and hydrogen metabolisms inS. oneidensis have been described previously, but little is known about the role of formate oxidation in the ecophysiology of these bacteria. Formate is produced by S. oneidensis through pyruvate formate lyase during anaerobic growth on carbon sources that enter metabolism at or above the level of pyruvate, and the genome contains three gene clusters predicted to encode three complete formate dehydrogenase complexes. To determine the contribution of each complex to formate metabolism, strains lacking one, two, or all three annotated formate dehydrogenase gene clusters were generated and examined for growth rates and yields on a variety of carbon sources. Here, we report that formate oxidation contributes to both the growth rate and yield of S. oneidensis through the generation of proton motive force. Exogenous formate also greatly accelerated growth on N-acetylglucosamine, a carbon source normally utilized very slowly by S. oneidensis under anaerobic conditions. Surprisingly, deletion of all three formate dehydrogenase gene clusters enabled growth of S. oneidensis using pyruvate in the absence of a terminal electron acceptor, a mode of growth never before observed in these bacteria. Our results demonstrate that formate oxidation is a fundamental strategy under anaerobic conditions for energy conservation inS. oneidensis. Shewanella species have garnered interest in biotechnology applications for their ability to respire extracellular terminal electron acceptors, such as insoluble iron oxides and electrodes. While much effort has gone into studying the proteins for extracellular electron transport, how electrons generated through the oxidation of organic carbon sources enter this pathway remains understudied. Here, we quantify the role of formate oxidation in the anaerobic physiology of Shewanella oneidensis Formate oxidation contributes to both the growth rate and yield on a variety of carbon sources through the generation of proton motive force. Advances in our understanding of the anaerobic metabolism of S. oneidensis are important for our ability to utilize and engineer this organism for applications in bioenergy, biocatalysis, and bioremediation. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Formate Metabolism in Shewanella oneidensis Generates Proton Motive Force and Prevents Growth without an Electron Acceptor

PubMed Central

Kane, Aunica L.; Brutinel, Evan D.; Joo, Heena; Maysonet, Rebecca; VanDrisse, Chelsey M.; Kotloski, Nicholas J.

2016-01-01

ABSTRACT Shewanella oneidensis strain MR-1 is a facultative anaerobe that thrives in redox-stratified environments due to its ability to utilize a wide array of terminal electron acceptors. Conversely, the electron donors utilized by S. oneidensis are more limited and include products of primary fermentation such as lactate, pyruvate, formate, and hydrogen. Lactate, pyruvate, and hydrogen metabolisms in S. oneidensis have been described previously, but little is known about the role of formate oxidation in the ecophysiology of these bacteria. Formate is produced by S. oneidensis through pyruvate formate lyase during anaerobic growth on carbon sources that enter metabolism at or above the level of pyruvate, and the genome contains three gene clusters predicted to encode three complete formate dehydrogenase complexes. To determine the contribution of each complex to formate metabolism, strains lacking one, two, or all three annotated formate dehydrogenase gene clusters were generated and examined for growth rates and yields on a variety of carbon sources. Here, we report that formate oxidation contributes to both the growth rate and yield of S. oneidensis through the generation of proton motive force. Exogenous formate also greatly accelerated growth on N-acetylglucosamine, a carbon source normally utilized very slowly by S. oneidensis under anaerobic conditions. Surprisingly, deletion of all three formate dehydrogenase gene clusters enabled growth of S. oneidensis using pyruvate in the absence of a terminal electron acceptor, a mode of growth never before observed in these bacteria. Our results demonstrate that formate oxidation is a fundamental strategy under anaerobic conditions for energy conservation in S. oneidensis. IMPORTANCE Shewanella species have garnered interest in biotechnology applications for their ability to respire extracellular terminal electron acceptors, such as insoluble iron oxides and electrodes. While much effort has gone into studying the proteins for extracellular electron transport, how electrons generated through the oxidation of organic carbon sources enter this pathway remains understudied. Here, we quantify the role of formate oxidation in the anaerobic physiology of Shewanella oneidensis. Formate oxidation contributes to both the growth rate and yield on a variety of carbon sources through the generation of proton motive force. Advances in our understanding of the anaerobic metabolism of S. oneidensis are important for our ability to utilize and engineer this organism for applications in bioenergy, biocatalysis, and bioremediation. PMID:26883823

Limitation of using Angstrom exponent for source apportionment of black carbon in complex environments - A case study from the North West Indo- Gangetic plain

NASA Astrophysics Data System (ADS)

Garg, S.; Sinha, B.; Sinha, V.; Chandra, P.; Sarda Esteve, R.; Gros, V.

2015-12-01

Determining the contribution of different sources to the total BC is necessary for targeted mitigation. Absorption Angstrom exponent (αabs) measurements of black carbon (BC) have recently been introduced as a novel tool to apportion the contribution of biomass burning sources to BC. Two-component Aethalometer model for apportioning BC to biomass burning sources and fossil fuel combustion sources, which uses αabs as a generic indicator of the source type, is widely used for determining the contribution of the two types of sources to the total BC. Our work studies BC emissions in the highly-populated, anthropogenic emissions-dominated Indo-Gangetic Plain and demonstrates that the αabs cannot be used as a generic tracer for biomass burning emissions in a complex environment. Simultaneously collected high time resolution data from a 7-wavelength Aethalometer (AE 42, Magee Scientific, USA) and a high sensitivity Proton Transfer Reaction- Quadrupole Mass Spectrometer (PTR-MS) installed at a sub-urban site in Mohali (Punjab), India, were used to identify a number of biomass combustion plumes during which BC enhancements correlated strongly with an increase in acetonitrile (a well-established biomass burning tracer) mixing ratio. Each type of biomass combustion is classified and characterized by distinct emission ratios of aromatic compounds and oxygenated VOCs to acetonitrile. The identified types of biomass combustion include two different types of crop residue burning (paddy and wheat), burning of leaf-litter, and garbage burning. Traffic (fossil-fuel burning) plumes were also selected for comparison. We find that the two-component Aethalometer source-apportionment method cannot be extrapolated to all types of biomass combustion and αabs of traffic plumes can be >1 in developing countries like India, where use of adulterated fuel in vehicles is common. Thus in a complex environment, where multiple anthropogenic BC sources and air masses of variable photochemical age impact a receptor site, the angstrom exponent is not representative of the combustion type and therefore, cannot be used as a generic tracer to constrain source contributions.

N2O production in the Fe(II)(EDTA)-NO reduction process: the effects of carbon source and pH.

PubMed

Chen, Jun; Wang, Lei; Zheng, Ji; Chen, Jianmeng

2015-07-01

Chemical absorption-biological reduction (BioDeNOx), which uses Fe(II)(EDTA) as a complexing agent for promoting the mass transfer efficiency of NO from gas to water, is a promising technology for removing nitric oxide (NO) from flue gases. The carbon source and pH are important parameters for Fe(II)(EDTA)-NO (the production of absorption) reduction and N2O emissions from BioDeNOx systems. Batch tests were performed to evaluate the effects of four different carbon sources (i.e., methanol, ethanol, sodium acetate, and glucose) on Fe(II)(EDTA)-NO reduction and N2O emissions at an initial pH of 7.2 ± 0.2. The removal efficiency of Fe(II)(EDTA)-NO was 93.9%, with a theoretical rate of 0.77 mmol L(-1) h(-1) after 24 h of operation. The highest N2O production was 0.025 mmol L(-1) after 3 h when glucose was used as the carbon source. The capacities of the carbon sources to enhance the activity of the Fe(II)(EDTA)-NO reductase enzyme decreased in the following order based on the C/N ratio: glucose > ethanol > sodium acetate > methanol. Over the investigated pH range of 5.5-8.5, the Fe(II)(EDTA)-NO removal efficiency was highest at a pH of 7.5, with a theoretical rate of 0.88 mmol L(-1) h(-1). However, the N2O production was lowest at a pH of 8.5. The primary effect of pH on denitrification resulted from the inhibition of nosZ in acidic conditions.

Cyanide Ligand Assembly by Carbon Atom Transfer to an Iron Nitride

DOE PAGES

Martinez, Jorge L.; Lin, Hsiu-Jung; Lee, Wei-Tsung; ...

2017-09-21

The new iron(IV) nitride complex PhB( iPr 2Im) 3Fe≡N reacts with two equivalents of bis(diisopropylamino)cyclopropenylidene (BAC) to provide PhB( iPr 2Im) 3Fe(CN)(N 2)(BAC). This unusual example of a four-electron reaction involves carbon atom transfer from BAC to create a cyanide ligand along with the alkyne iPr 2N-C≡C-N iPr 2. The iron complex is in equilibrium with an N 2- free species. Further reaction with CO leads to formation of a CO analogue, which can be independently prepared using NaCN as the cyanide source, while reaction with B(C 6F 5) 3 provides the cyanoborane derivative.

Nutritional Requirements of Acinetobacter Strains Isolated from Soil, Water, and Sewage

PubMed Central

Warskow, Alice L.; Juni, Elliot

1972-01-01

One hundred five strains of Acinetobacter were isolated from water, soil, and sewage on nonselective complex media, and their nutritional properties were studied. Only one of these strains requires growth factors in order to grow in a mineral medium containing a single carbon source. PMID:4563966

Observations of Carbon Chain Chemistry in the Envelopes of Low-Mass Protostars

NASA Technical Reports Server (NTRS)

Cordiner, M.; Charnley, S.; Buckle, J. V.; Walsh, C.; Millar, T. J.

2012-01-01

Observational results are reported from our surveys in the Northern Hemisphere (using the Onsala 20 m telescope) and the Southern Hemisphere (using the Mopra 22 m telescope) to search for 3 mm emission lines from carbon-chain-bearing species and other complex molecules in the envelopes of low-mass protostars. Based on a sample of approximately 60 sources, we find that carbon-chain-bearing species including HC3N (and C4H) are highly abundant in the vicinity of more than half of the observed protostars. The origin and evolution of these species, including their likely incorporation into ices in protoplanetary disks will be discussed

Evaluation of pollutant source strengths and control strategies in an innovative residential high-rise building

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1998-12-31

Describes a study undertaken to assess the indoor air quality in the Clos St-Andre, a 78-unit residential complex in downtown Montreal, through the implementation of a monitoring protocol in three of the building`s suites; and to examine the relationships between mechanical ventilation, material emissions, occupant lifestyle, and indoor air pollutant concentrations. The monitoring protocol consisted of tracer gas, air exchange testing, material emission testing, airtightness testing, and the monitoring of air temperature, relative humidity, carbon dioxide, carbon monoxide, formaldehyde, and total volatile organic carbon in the suites. Trends in pollutant concentrations over time in the post-construction period are noted.

Measurements of Carbon Dioxide, Methane, and Other Related Tracers at High Spatial and Temporal Resolution in an Urban Environment

NASA Astrophysics Data System (ADS)

Forgeron, J.; Yasuhara, S.; Rella, C.; Jacobson, G. A.; Chiao, S.

2012-12-01

Measurements of Carbon Dioxide, Methane, and Other Related Tracers at High Spatial and Temporal Resolution in an Urban Environment Jeff Forgeron1,2, Scott Yasuhara1,2, Chris Rella1, Gloria Jacobson1, Sen Chiao2 1Picarro Inc., 3105 Patrick Henry Drive, Santa Clara California 95054 USA 2San Jose State University, 1 Washington Square, San Jose California USA JeffAForgeron@gmail.com The ability to quantify sources and sinks of carbon dioxide and methane on the urban scale is essential for understanding the atmospheric drivers to global climate change. In the 'top-down' approach, overall carbon fluxes are determined by combining remote measurements of carbon dioxide concentrations with complex atmospheric transport models, and these emissions measurements are compared to 'bottom-up' predictions based on detailed inventories of the sources and sinks of carbon, both anthropogenic and biogenic in nature. This approach, which has proven to be effective at continental scales, becomes challenging to implement at urban scales, due to poorly understood atmospheric transport models and high variability of the emissions sources in space (e.g., factories, highways, green spaces) and time (rush hours, factory shifts and shutdowns, and diurnal and seasonal variation in residential energy use). New measurement and analysis techniques are required to make sense of the carbon dioxide signal in cities. Here we present detailed, high spatial- and temporal- resolution greenhouse gas measurements made by multiple Picarro-CRDS analyzers in Silicon Valley in California. Real-time carbon dioxide data from a 12-month period are combined with real-time carbon monoxide, methane, acetylene, and carbon-13 measurements to partition the observed carbon dioxide concentrations between different anthropogenic sectors (e.g., transport, residential) and biogenic sources. Real-time wind rose data are also combined with real-time methane data to help identify the direction of local emissions of methane. The ratio between carbon dioxide and carbon monoxide is shown to vary over more than a factor of two from season to season or even from day to night, indicating rapid but frequent shifts in the balance between different carbon dioxide sources. Additional information is given by the carbon-13 signature and by acetylene, a fossil fuel combustion tracer that provides complimentary information to carbon monoxide. In spring and summer, the combined signal of the urban center and the surrounding biosphere and urban green space is explored. These methods show great promise for identifying, quantifying, and partitioning urban-ecological (carbon) emissions. Figure 1: The left graph shows the change in diurnal cycle of CO2 (with the traffic signal removed) over a five month period. The right graph is the transit CO2 signal from weekdays and weekends, showing clear weekday enhancement of transit emissions.

Petroleum systems of the Northwest Java Province, Java and offshore southeast Sumatra, Indonesia

USGS Publications Warehouse

Bishop, Michele G.

2000-01-01

Mature, synrift lacustrine shales of Eocene to Oligocene age and mature, late-rift coals and coaly shales of Oligocene to Miocene age are source rocks for oil and gas in two important petroleum systems of the onshore and offshore areas of the Northwest Java Basin. Biogenic gas and carbonate-sourced gas have also been identified. These hydrocarbons are trapped primarily in anticlines and fault blocks involving sandstone and carbonate reservoirs. These source rocks and reservoir rocks were deposited in a complex of Tertiary rift basins formed from single or multiple half-grabens on the south edge of the Sunda Shelf plate. The overall transgressive succession was punctuated by clastic input from the exposed Sunda Shelf and marine transgressions from the south. The Northwest Java province may contain more than 2 billion barrels of oil equivalent in addition to the 10 billion barrels of oil equivalent already identified.

Exhaustive Analysis of a Genotype Space Comprising 1015 Central Carbon Metabolisms Reveals an Organization Conducive to Metabolic Innovation

PubMed Central

Hosseini, Sayed-Rzgar; Barve, Aditya; Wagner, Andreas

2015-01-01

All biological evolution takes place in a space of possible genotypes and their phenotypes. The structure of this space defines the evolutionary potential and limitations of an evolving system. Metabolism is one of the most ancient and fundamental evolving systems, sustaining life by extracting energy from extracellular nutrients. Here we study metabolism’s potential for innovation by analyzing an exhaustive genotype-phenotype map for a space of 1015 metabolisms that encodes all possible subsets of 51 reactions in central carbon metabolism. Using flux balance analysis, we predict the viability of these metabolisms on 10 different carbon sources which give rise to 1024 potential metabolic phenotypes. Although viable metabolisms with any one phenotype comprise a tiny fraction of genotype space, their absolute numbers exceed 109 for some phenotypes. Metabolisms with any one phenotype typically form a single network of genotypes that extends far or all the way through metabolic genotype space, where any two genotypes can be reached from each other through a series of single reaction changes. The minimal distance of genotype networks associated with different phenotypes is small, such that one can reach metabolisms with novel phenotypes – viable on new carbon sources – through one or few genotypic changes. Exceptions to these principles exist for those metabolisms whose complexity (number of reactions) is close to the minimum needed for viability. Increasing metabolic complexity enhances the potential for both evolutionary conservation and evolutionary innovation. PMID:26252881

Mutations in Alternative Carbon Utilization Pathways in Candida albicans Attenuate Virulence and Confer Pleiotropic Phenotypes▿

PubMed Central

Ramírez, Melissa A.; Lorenz, Michael C.

2007-01-01

The interaction between Candida albicans and cells of the innate immune system is a key determinant of disease progression. Transcriptional profiling has revealed that C. albicans has a complex response to phagocytosis, much of which is similar to carbon starvation. This suggests that nutrient limitation is a significant stress in vivo, and we have shown that glyoxylate cycle mutants are less virulent in mice. To examine whether other aspects of carbon metabolism are important in vivo during an infection, we have constructed strains lacking FOX2 and FBP1, which encode key components of fatty acid β-oxidation and gluconeogenesis, respectively. As expected, fox2Δ mutants failed to utilize several fatty acids as carbon sources. Surprisingly, however, these mutants also failed to grow in the presence of several other carbon sources, whose assimilation is independent of β-oxidation, including ethanol and citric acid. Mutants lacking the glyoxylate enzyme ICL1 also had more severe carbon utilization phenotypes than were expected. These results suggest that the regulation of alternative carbon metabolism in C. albicans is significantly different from that in other fungi. In vivo, fox2Δ mutants show a moderate but significant reduction in virulence in a mouse model of disseminated candidiasis, while disruption of the glyoxylate cycle or gluconeogenesis confers a severe attenuation in this model. These data indicate that C. albicans often encounters carbon-poor conditions during growth in the host and that the ability to efficiently utilize multiple nonfermentable carbon sources is a virulence determinant. Consistent with this in vivo requirement, C. albicans uniquely regulates carbon metabolism in a more integrated manner than in Saccharomyces cerevisiae, such that defects in one part of the machinery have wider impacts than expected. These aspects of alternative carbon metabolism may then be useful as targets for therapeutic intervention. PMID:17158734

Iridium(iii) phosphorescent complexes with dual stereogenic centers: single crystal, electronic circular dichroism evidence and circularly polarized luminescence properties.

PubMed

Li, Tian-Yi; Zheng, You-Xuan; Zhou, Yong-Hui

2016-12-06

Iridium complexes with a chiral metal center and chiral carbons, Λ/Δ-(dfppy) 2 Ir(chty-R) and Λ/Δ-(dfppy) 2 Ir(chty-S), were synthesized and characterized. These isomers have the same steady-state photophysical properties, and obvious offsets in ECD spectra highlight both the chiral sources. Each enantiomeric couple shows mirror-image CPL bands with a dissymmetry factor in the order of 10 -3 .

Integrated transcriptome sequencing and dynamic analysis reveal carbon source partitioning between terpenoid and oil accumulation in developing Lindera glauca fruits.

PubMed

Niu, Jun; Chen, Yinlei; An, Jiyong; Hou, Xinyu; Cai, Jian; Wang, Jia; Zhang, Zhixiang; Lin, Shanzhi

2015-10-08

Lindera glauca fruits (LGF) with the abundance of terpenoid and oil has emerged as a novel specific material for industrial and medicinal application in China, but the complex regulatory mechanisms of carbon source partitioning into terpenoid biosynthetic pathway (TBP) and oil biosynthetic pathway (OBP) in developing LGF is still unknown. Here we perform the analysis of contents and compositions of terpenoid and oil from 7 stages of developing LGF to characterize a dramatic difference in temporal accumulative patterns. The resulting 3 crucial samples at 50, 125 and 150 days after flowering (DAF) were selected for comparative deep transcriptome analysis. By Illumina sequencing, the obtained approximately 81 million reads are assembled into 69,160 unigenes, among which 174, 71, 81 and 155 unigenes are implicated in glycolysis, pentose phosphate pathway (PPP), TBP and OBP, respectively. Integrated differential expression profiling and qRT-PCR, we specifically characterize the key enzymes and transcription factors (TFs) involved in regulating carbon allocation ratios for terpenoid or oil accumulation in developing LGF. These results contribute to our understanding of the regulatory mechanisms of carbon source partitioning between terpenoid and oil in developing LGF, and to the improvement of resource utilization and molecular breeding for L. glauca.

Bounding the Role of Black Carbon in the Climate System: A Scientific Assessment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bond, Tami C.; Doherty, Sarah J.; Fahey, D. W.

2013-06-06

Black carbon aerosol plays a unique and important role in Earth’s climate system. Black carbon is a type of carbonaceous material with a unique combination of physical properties. Predominant sources are combustion related; namely, fossil fuels for transportation, solid fuels for industrial and residential uses, and open burning of biomass. Total global emissions of black carbon using bottom-up inventory methods are 7500 Gg yr-1 in the year 2000 with an uncertainty range of 2000 to 29000. This assessment provides an evaluation of black-carbon climate forcing that is comprehensive in its inclusion of all known and relevant processes and that ismore » quantitative in providing best estimates and uncertainties of the main forcing terms: direct solar absorption, influence on liquid, mixed-phase, and ice clouds, and deposition on snow and ice. These effects are calculated with models, but when possible, they are evaluated with both microphysical measurements and field observations. Global atmospheric absorption attributable to black carbon is too low in many models, and should be increased by about about 60%. After this scaling, the best estimate for the industrial-era (1750 to 2005) direct radiative forcing of black carbon is +0.43 W m-2 with 90% uncertainty bounds of (+0.17, +0.68) W m-2. Total direct forcing by all black carbon sources in the present day is estimated as +0.49 (+0.20, +0.76) W m-2. Direct radiative forcing alone does not capture important rapid adjustment mechanisms. A framework is described and used for quantifying climate forcings and their rapid responses and feedbacks. The best estimate of industrial-era (1750 to 2005) climate forcing of black carbon through all forcing mechanisms is +0.77 W m-2 with 90% uncertainty bounds of +-0.06 to +1.53 W m-2. Thus, there is a 96% probability that black carbon emissions, independent of co-emitted species, have a positive forcing and warm the climate. With a value of +0.77 W m-2, black carbon is likely the second most important individual climate-forcing agent in the industrial era, following carbon dioxide. Sources that emit black carbon also emit other short- lived species that may either cool or warm climate. Climate forcings from co-emitted species are estimated and used in the framework described herein. When the principal effects of co- emissions, including cooling agents such as sulfur dioxide, are included in net forcing, energy-related sources (fossil-fuel and biofuel) have a net climate forcing of +0.004 (-0.62 to +0.57) W m-2 during the first year after emission. For a few of these sources, such as diesel engines and possibly residential biofuels, warming is strong enough that eliminating all emissions from these sources would reduce net climate forcing (i.e., produce cooling). When open burning emissions, which emit high levels of organic matter, are included in the total, the best estimate of net industrial-era climate forcing by all black- carbon-rich sources becomes slightly negative (-0.08 W m-2 with 90% uncertainty bounds of -1.23 to +0.81 W m-2). The uncertainties in net climate forcing from black-carbon-rich sources are substantial, largely due to lack of knowledge about cloud interactions with both black carbon and co-emitted organic carbon. In prioritizing potential black-carbon mitigation actions, non-science factors, such as technical feasibility, costs, policy design, and implementation feasibility play important roles. The major sources of black carbon are presently in different stages with regard to the feasibility for near-term mitigation. This assessment, by evaluating the large number and complexity of the associated physical and radiative processes in black-carbon climate forcing, sets a baseline from which to improve future climate forcing estimates.« less

Microbial Breakdown of Organic Carbon in the Diverse Sediments of Guaymas Basin

NASA Astrophysics Data System (ADS)

Hoarfrost, A.; Snider, R.; Arnosti, C.

2015-12-01

Guaymas Basin is characterized by sediments under conditions ranging from hemipelagic to hydrothermal. This wide range in geochemical contexts results in diverse microbial communities that may have varying abilities to access organic matter. We can address these functional differences by comparing enzyme activities initializing the breakdown of organic matter across these sediment types; however, previous direct measurements of the extracellular hydrolysis of complex organic carbon in sediments are sparse. We measured this first step of heterotrophic processing of organic matter in sediments at 5-10cm and 55-60cm depth from a wide range of environmental settings in Guaymas Basin. Sediment sources included sulfidic seeps on the Sonora Margin, hemipelagic ridge flank sediments, and hydrothermically altered Sonora Margin sediments bordering a methane seep site. Hydrolysis of organic substrates varied by depth and by sediment source, but despite high energy potential and organic carbon load in sulfidic sediments, activity was not highest where hydrothermal influence was highest. These results suggest that heterotrophic breakdown of organic carbon in Guaymas Basin sediments may be sensitive to factors including varying composition of organic carbon available in different sediment types, or differences in microbial community capacities to access specific organic substrates.

Fabrication of periodical surface structures by picosecond laser irradiation of carbon thin films: transformation of amorphous carbon in nanographite

NASA Astrophysics Data System (ADS)

Popescu, C.; Dorcioman, G.; Bita, B.; Besleaga, C.; Zgura, I.; Himcinschi, C.; Popescu, A. C.

2016-12-01

Thin films of carbon were synthesized by ns pulsed laser deposition in vacuum on silicon substrates, starting from graphite targets. Further on, the films were irradiated with a picosecond laser source emitting in visible at 532 nm. After tuning of laser parameters, we obtained a film surface covered by laser induced periodical surface structures (LIPSS). They were investigated by optical, scanning electron and atomic force microscopy. It was observed that changing the irradiation angle influences the LIPSS covered area. At high magnification it was revealed that the LIPSS pattern was quite complex, being composed of other small LIPSS islands, interconnected by bridges of nanoparticles. Raman spectra for the non-irradiated carbon films were typical for a-C type of diamond-like carbon, while the LIPSS spectra were characteristic to nano-graphite. The pristine carbon film was hydrophilic, while the LIPSS covered film surface was hydrophobic.

KSC-2014-3119

NASA Image and Video Library

2014-07-02

VANDENBERG AIR FORCE BASE, Calif. – Representatives of news and social media outlets are given the opportunity to ask questions of NASA and aerospace contractor management during a post-launch news conference at Vandenberg Air Force Base in California following the successful launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. Liftoff of OCO-2 from Space Launch Complex 2 aboard a United Launch Alliance Delta II rocket was on schedule at 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3054

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Representatives from social media outlets participate in a NASA Social at Vandenberg Air Force Base in California for the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. Launch of OCO-2 aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. The social media users selected to attend the two-day event on June 30 and July 1 are given the same access as news media in an effort to align their experience with those of traditional media. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3122

NASA Image and Video Library

2014-07-02

VANDENBERG AIR FORCE BASE, Calif. – Mike Miller, senior vice president, Science and Environmental Satellite Programs, Orbital Sciences Space Systems Group, participates in a post-launch news conference at Vandenberg Air Force Base in California following the successful launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. Orbital Sciences built the satellite for NASA. Liftoff of OCO-2 from Space Launch Complex 2 aboard a United Launch Alliance Delta II rocket was on schedule at 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

Temperature and carbon assimilation regulate the chlorosome biogenesis in green sulfur bacteria.

PubMed

Tang, Joseph Kuo-Hsiang; Saikin, Semion K; Pingali, Sai Venkatesh; Enriquez, Miriam M; Huh, Joonsuk; Frank, Harry A; Urban, Volker S; Aspuru-Guzik, Alán

2013-09-17

Green photosynthetic bacteria adjust the structure and functionality of the chlorosome-the light-absorbing antenna complex-in response to environmental stress factors. The chlorosome is a natural self-assembled aggregate of bacteriochlorophyll (BChl) molecules. In this study, we report the regulation of the biogenesis of the Chlorobaculum tepidum chlorosome by carbon assimilation in conjunction with temperature changes. Our studies indicate that the carbon source and thermal stress culture of C. tepidum grows slower and incorporates fewer BChl c in the chlorosome. Compared with the chlorosome from other cultural conditions we investigated, the chlorosome from the carbon source and thermal stress culture displays (a) smaller cross-sectional radius and overall size, (b) simplified BChl c homologs with smaller side chains, (c) blue-shifted Qy absorption maxima, and (d) a sigmoid-shaped circular dichroism spectra. Using a theoretical model, we analyze how the observed spectral modifications can be associated with structural changes of BChl aggregates inside the chlorosome. Our report suggests a mechanism of metabolic regulation for chlorosome biogenesis. Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

KSC-2014-3051

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – From left, George Diller, NASA Public Affairs Ken Jucks, Orbiting Carbon Observatory-2, or OCO-2, project executive at NASA Headquarters David Crisp, OCO-2 science team leader at NASA's Jet Propulsion Laboratory, or JPL and Annmarie Eldering, OCO-2 deputy project scientist at JPL, participate in a mission science briefing at Vandenberg Air Force Base in California prior to the launch of the observatory. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3120

NASA Image and Video Library

2014-07-02

VANDENBERG AIR FORCE BASE, Calif. – Ralph Basilio, project manager for NASA's Orbiting Carbon Observatory-2, or OCO-2, from NASA's Jet Propulsion Laboratory participates in a post-launch news conference at Vandenberg Air Force Base in California following the successful launch of the satellite. Liftoff of OCO-2 from Space Launch Complex 2 aboard a United Launch Alliance Delta II rocket was on schedule at 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3049

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – From left, Ken Jucks, Orbiting Carbon Observatory-2, or OCO-2, project executive at NASA Headquarters David Crisp, OCO-2 science team leader at NASA's Jet Propulsion Laboratory, or JPL and Annmarie Eldering, OCO-2 deputy project scientist at JPL, participate in a mission science briefing at Vandenberg Air Force Base in California prior to the launch of the observatory. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

KSC-2014-3026

NASA Image and Video Library

2014-06-20

VANDENBERG AIR FORCE BASE, Calif. – Logos affixed to the mobile service tower at Space Launch Complex 2 on Vandenberg Air Force Base in California represent the principal players in the launch campaign underway at the pad. From the top are the logos for the National Aeronautics and Space Administration, or NASA the Orbiting Carbon Observatory-2, or OCO-2 and the United Launch Alliance, or ULA. Launch of NASA's OCO-2 satellite aboard a United Launch Alliance Delta II rocket is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Randy Beaudoin

KSC-2014-3121

NASA Image and Video Library

2014-07-02

VANDENBERG AIR FORCE BASE, Calif. – Geoff Yoder, deputy associate administrator for Programs, Science Mission Directorate, NASA Headquarters, participates in a post-launch news conference at Vandenberg Air Force Base in California following the successful launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. Liftoff of OCO-2 from Space Launch Complex 2 aboard a United Launch Alliance Delta II rocket was on schedule at 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

UV-Vis-IR spectral complex refractive indices and optical properties of brown carbon aerosol from biomass burning

NASA Astrophysics Data System (ADS)

Sumlin, Benjamin J.; Heinson, Yuli W.; Shetty, Nishit; Pandey, Apoorva; Pattison, Robert S.; Baker, Stephen; Hao, Wei Min; Chakrabarty, Rajan K.

2018-02-01

Constraining the complex refractive indices, optical properties and size of brown carbon (BrC) aerosols is a vital endeavor for improving climate models and satellite retrieval algorithms. Smoldering wildfires are the largest source of primary BrC, and fuel parameters such as moisture content, source depth, geographic origin, and fuel packing density could influence the properties of the emitted aerosol. We measured in situ spectral (375-1047 nm) optical properties of BrC aerosols emitted from smoldering combustion of Boreal and Indonesian peatlands across a range of these fuel parameters. Inverse Lorenz-Mie algorithms used these optical measurements along with simultaneously measured particle size distributions to retrieve the aerosol complex refractive indices (m = n + iκ). Our results show that the real part n is constrained between 1.5 and 1.7 with no obvious functionality in wavelength (λ), moisture content, source depth, or geographic origin. With increasing λ from 375 to 532 nm, κ decreased from 0.014 to 0.003, with corresponding increase in single scattering albedo (SSA) from 0.93 to 0.99. The spectral variability of κ follows the Kramers-Kronig dispersion relation for a damped harmonic oscillator. For λ ≥ 532 nm, both κ and SSA showed no spectral dependency. We discuss differences between this study and previous work. The imaginary part κ was sensitive to changes in FPD, and we hypothesize mechanisms that might help explain this observation.

Production of capsular polysaccharide from Escherichia coli K4 for biotechnological applications.

PubMed

Cimini, Donatella; Restaino, Odile Francesca; Catapano, Angela; De Rosa, Mario; Schiraldi, Chiara

2010-02-01

The production of industrially relevant microbial polysaccharides has recently gained much interest. The capsular polysaccharide of Escherichia coli K4 is almost identical to chondroitin, a commercially valuable biopolymer that is so far obtained from animal tissues entailing complex and expensive extraction procedures. In the present study, the production of capsular polysaccharide by E. coli K4 was investigated taking into consideration a potential industrial application. Strain physiology was first characterized in shake flask experiments to determine the optimal culture conditions for the growth of the microorganism and correlate it to polysaccharide production. Results show that the concentration of carbon source greatly affects polysaccharide production, while the complex nitrogen source is mainly responsible for the build up of biomass. Small-scale batch processes were performed to further evaluate the effect of the initial carbon source concentration and of growth temperatures on polysaccharide production, finally leading to the establishment of the medium to use in following fermentation experiments on a bigger scale. The fed-batch strategy next developed on a 2-L reactor resulted in a maximum cell density of 56 g(cww)/L and a titre of capsular polysaccharide equal to 1.4 g/L, approximately ten- and fivefold higher than results obtained in shake flask and 2-L batch experiments, respectively. The release kinetics of K4 polysaccharide into the medium were also explored to gain insight into the mechanisms underlying a complex aspect of the strain physiology.

Disentangling residence time and temperature sensitivity of microbial decomposition in a global soil carbon model

NASA Astrophysics Data System (ADS)

Exbrayat, J.-F.; Pitman, A. J.; Abramowitz, G.

2014-12-01

Recent studies have identified the first-order representation of microbial decomposition as a major source of uncertainty in simulations and projections of the terrestrial carbon balance. Here, we use a reduced complexity model representative of current state-of-the-art models of soil organic carbon decomposition. We undertake a systematic sensitivity analysis to disentangle the effect of the time-invariant baseline residence time (k) and the sensitivity of microbial decomposition to temperature (Q10) on soil carbon dynamics at regional and global scales. Our simulations produce a range in total soil carbon at equilibrium of ~ 592 to 2745 Pg C, which is similar to the ~ 561 to 2938 Pg C range in pre-industrial soil carbon in models used in the fifth phase of the Coupled Model Intercomparison Project (CMIP5). This range depends primarily on the value of k, although the impact of Q10 is not trivial at regional scales. As climate changes through the historical period, and into the future, k is primarily responsible for the magnitude of the response in soil carbon, whereas Q10 determines whether the soil remains a sink, or becomes a source in the future mostly by its effect on mid-latitude carbon balance. If we restrict our simulations to those simulating total soil carbon stocks consistent with observations of current stocks, the projected range in total soil carbon change is reduced by 42% for the historical simulations and 45% for the future projections. However, while this observation-based selection dismisses outliers, it does not increase confidence in the future sign of the soil carbon feedback. We conclude that despite this result, future estimates of soil carbon and how soil carbon responds to climate change should be more constrained by available data sets of carbon stocks.

The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides

PubMed Central

Benítez-Páez, Alfonso; Gómez del Pulgar, Eva M.; Sanz, Yolanda

2017-01-01

Bacteroides spp. are dominant components of the phylum Bacteroidetes in the gut microbiota and prosper in glycan enriched environments. However, knowledge of the machinery of specific species isolated from humans (like Bacteroides uniformis) contributing to the utilization of dietary and endogenous sources of glycans and their byproducts is limited. We have used the cutting-edge nanopore-based technology to sequence the genome of B. uniformis CECT 7771, a human symbiont with a proven pre-clinical efficacy on metabolic and immune dysfunctions in obesity animal models. We have also used massive sequencing approaches to distinguish the genome expression patterns in response to carbon sources of different complexity during growth. At genome-wide level, our analyses globally demonstrate that B. uniformis strains exhibit an expanded glycolytic capability when compared with other Bacteroides species. Moreover, by studying the growth and whole-genome expression of B. uniformis CECT 7771 in response to different carbon sources, we detected a differential growth fitness and expression patterns across the genome depending on the carbon source of the culture media. The dietary fibers used exerted different effects on B. uniformis CECT 7771 activating different molecular pathways and, therefore, allowing the production of different metabolite types with potential impact on gut health. The genome and transcriptome analysis of B. uniformis CECT 7771, in response to different carbon sources, shows its high versatility to utilize both dietary and endogenous glycans along with the production of potentially beneficial end products for both the bacterium and the host, pointing to a mechanistic basis of a mutualistic relationship. PMID:28971068

Cold-seep carbonates of the middle and lower continental slope, northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Roberts, Harry H.; Feng, Dong; Joye, Samantha B.

2010-11-01

Authigenic carbonates from cold seeps on the middle and lower continental slope of the northern Gulf of Mexico (GOM) exhibit a wide range of mineralogical and stable isotopic compositions. These carbonates consist of concretions and nodules in surface sediments, hardgrounds of crusts and isolated slabs, and mounded buildups of blocks and slabs of up to over 10 meters in relief above the surrounding seafloor. Mineralogically, the carbonates are dominated by high-Mg calcite (HMC) and aragonite. However, low levels (<5 wt%) of dolomite are present in most samples. Petrographically, Mg-calcite peloidal matrix and acicular to botryoidal aragonitic void-filling cements are the most frequent associations. The carbon isotopic compositions of the carbonates range from -60.8 to 14.0‰ PDB, indicating complex carbon sources that include 13C-depleted biogenic and thermogenic methane, biodegraded crude oil, seawater CO2, and 13C-enriched residual CO2 from methanogenesis. A similarly large variability in δ18O values (2.5 to 6.7‰ PDB) demonstrates the geochemical complexity of the slope, with some samples pointing toward an 18O-enriched oxygen source that is possibly related to advection of 18O-enriched formation water and/or to the decomposition of gas hydrate. A considerable range of mineralogical and isotopic variations in cold-seep carbonate composition was noted even within individual study sites. However, common trends occur across multiple geographic areas. This situation suggests that local controls on fluid and gas flux, types of seep hydrocarbons, the presence or absence of gas hydrate in the near-surface sediment, and chemosynthetic communities, as well as the temporal evolution of the local hydrocarbon reservoir, all may play a part in determining carbonate mineralogy and isotope geochemistry. The carbon isotope data clearly indicate that between-site variation is greater than within-site variation. Seep carbonates formed on the middle and lower continental slope of the GOM do not appear to be substantially different from those found on the upper slope (<1000-m water depth). The highly variable fluids and gases that leave their geochemical imprints on seep carbonate of the middle and lower continental slope are similar to their outer shelf and upper slope counterparts.

78 FR 20868 - Approval and Promulgation of Implementation Plans; Designation of Areas for Air Quality Planning...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-04-08

... chemical reactions from precursor gases (e.g., secondary particles). Secondary particles, such as sulfates, nitrates, and complex carbon compounds, are formed from reactions with oxides of sulfur (SO X ), oxides of... nonattainment new source review (nonattainment NSR) permit programs; provisions for air pollution modeling; and...

Disentangling residence time and temperature sensitivity of microbial decomposition in a global soil carbon model

NASA Astrophysics Data System (ADS)

Exbrayat, J.-F.; Pitman, A. J.; Abramowitz, G.

2014-03-01

Recent studies have identified the first-order parameterization of microbial decomposition as a major source of uncertainty in simulations and projections of the terrestrial carbon balance. Here, we use a reduced complexity model representative of the current state-of-the-art parameterization of soil organic carbon decomposition. We undertake a systematic sensitivity analysis to disentangle the effect of the time-invariant baseline residence time (k) and the sensitvity of microbial decomposition to temperature (Q10) on soil carbon dynamics at regional and global scales. Our simulations produce a range in total soil carbon at equilibrium of ~ 592 to 2745 Pg C which is similar to the ~ 561 to 2938 Pg C range in pre-industrial soil carbon in models used in the fifth phase of the Coupled Model Intercomparison Project. This range depends primarily on the value of k, although the impact of Q10 is not trivial at regional scales. As climate changes through the historical period, and into the future, k is primarily responsible for the magnitude of the response in soil carbon, whereas Q10 determines whether the soil remains a sink, or becomes a source in the future mostly by its effect on mid-latitudes carbon balance. If we restrict our simulations to those simulating total soil carbon stocks consistent with observations of current stocks, the projected range in total soil carbon change is reduced by 42% for the historical simulations and 45% for the future projections. However, while this observation-based selection dismisses outliers it does not increase confidence in the future sign of the soil carbon feedback. We conclude that despite this result, future estimates of soil carbon, and how soil carbon responds to climate change should be constrained by available observational data sets.

Measurements of Carbon Dioxide and Carbon Monoxide at High Spatial and Temporal Resolution in an Urban Environment

NASA Astrophysics Data System (ADS)

Rella, C.; Jacobson, G. A.; Crosson, E.

2011-12-01

The ability to take inventory of critical greenhouse gases such as carbon dioxide and methane and quantify their sources and sinks is essential for understanding the atmospheric drivers to global climate change. "Top down" inversion measurements and models are used to quantify net carbon fluxes into the atmosphere. The overall carbon fluxes are determined by combining remote measurements of carbon dioxide concentrations with complex atmospheric transport models, and these emissions measurements are compared to "bottoms-up" predictions based on detailed inventories of the sources and sinks of carbon, both anthropogenic and biogenic in nature. At smaller distance scales, such as that of a city or even smaller, the basic framework underpinning the inversion modeling technique begins to break down: atmospheric transport models, which are well understood at a length scale of 100 km, work poorly or not at all at a 100m distance scale. Furthermore, the variability of the emissions sources in space (e.g., factories, highways, residences) and time (rush hours, factory shifts and shutdowns, residential energy usage variability during the day and over the year) complicate the interpretation of the measured signals. In this paper we present detailed, high spatial- and temporal-resolution greenhouse gas measurements in Silicon Valley, CA. The results of two experimental campaigns are presented: a 10m urban 'tower' and ground-based mobile mapping measurements. In both campaigns, real-time carbon dioxide data are combined with real-time carbon monoxide measurements to partition the observed CO2 concentrations between anthropogenic and biogenic sources . The urban tower measurements are made continuously over a period of many weeks. The mobile maps of the vicinity of the urban tower are taken repeatedly over a period of several days, and at different times of the day and under different atmospheric conditions, to assess the robustness and repeatability of the maps. Initial interpretation of the data is provided, using simple atmospheric models. These methods show great promise for quantifying and partitioning emissions in an urban setting with unprecedented detail.

Indoor air quality in green-renovated vs. non-green low-income homes of children living in a temperate region of US (Ohio).

PubMed

Coombs, Kanistha C; Chew, Ginger L; Schaffer, Christopher; Ryan, Patrick H; Brokamp, Cole; Grinshpun, Sergey A; Adamkiewicz, Gary; Chillrud, Steve; Hedman, Curtis; Colton, Meryl; Ross, Jamie; Reponen, Tiina

2016-06-01

Green eco-friendly housing includes approaches to reduce indoor air pollutant sources and to increase energy efficiency. Although sealing/tightening buildings can save energy and reduce the penetration of outdoor pollutants, an adverse outcome can be increased buildup of pollutants with indoor sources. The objective of this study was to determine the differences in the indoor air quality (IAQ) between green and non-green homes in low-income housing complexes. In one housing complex, apartments were renovated using green principles (n=28). Home visits were conducted immediately after the renovation, and subsequently at 6 months and at 12 months following the renovation. Of these homes, eight homes had pre-renovation home visits; this allowed pre- and post-renovation comparisons within the same homes. Parallel visits were conducted in non-green (control) apartments (n=14) in a nearby low-income housing complex. The IAQ assessments included PM2.5, black carbon, ultrafine particles, sulfur, total volatile organic compounds (VOCs), formaldehyde, and air exchange rate. Data were analyzed using linear mixed-effects models. None of the indoor pollutant concentrations were significantly different between green and non-green homes. However, we found differences when comparing the concentrations before and after renovation. Measured immediately after renovation, indoor black carbon concentrations were significantly lower averaging 682 ng/m(3) in post-renovation vs. 2364 ng/m(3) in pre-renovation home visits (p=0.01). In contrast, formaldehyde concentrations were significantly higher in post-renovated (0.03 ppm) than in pre-renovated homes (0.01 ppm) (p=0.004). Questionnaire data showed that opening of windows occurred less frequently in homes immediately post-renovation compared to pre-renovation; this factor likely affected the levels of indoor black carbon (from outdoor sources) and formaldehyde (from indoor sources) more than the renovation status itself. To reduce IAQ problems and potentially improve health, careful selection of indoor building materials and ensuring sufficient ventilation are important for green building designs. Copyright © 2016 Elsevier B.V. All rights reserved.

Stable carbon isotope ratios of intact GDGTs indicate heterogeneous sources to marine sediments

NASA Astrophysics Data System (ADS)

Pearson, Ann; Hurley, Sarah J.; Walter, Sunita R. Shah; Kusch, Stephanie; Lichtin, Samantha; Zhang, Yi Ge

2016-05-01

Thaumarchaeota, the major sources of marine glycerol dibiphytanyl glycerol tetraether lipids (GDGTs), are believed to fix the majority of their carbon directly from dissolved inorganic carbon (DIC). The δ13C values of GDGTs (δ13CGDGT) may be powerful tools for reconstructing variations in the ocean carbon cycle, including paleoproductivity and water mass circulation, if they can be related to values of δ13CDIC. To date, isotope measurements primarily are made on the C40 biphytane skeletons of GDGTs, rather than on complete tetraether structures. This approach erases information revealed by the isotopic heterogeneity of GDGTs within a sample and may impart an isotopic fractionation associated with the ether cleavage. To circumvent these issues, we present δ13C values for GDGTs from twelve recent sediments representing ten continental margin locations. Samples are purified by orthogonal dimensions of HPLC, followed by measurement of δ13C values by Spooling Wire Microcombustion (SWiM)-isotope ratio mass spectrometry (IRMS) with 1σ precision and accuracy of ±0.25‰. Using this approach, we confirm that GDGTs, generally around -19‰, are isotopically ;heavy; compared to other marine lipids. However, measured δ13CGDGT values are inconsistent with predicted values based on the 13C content of DIC in the overlying water column and the previously-published biosynthetic isotope fractionation for a pure culture of an autotrophic marine thaumarchaeon. In some sediments, the isotopic composition of individual GDGTs differs, indicating multiple source inputs. The data appear to confirm that crenarchaeol primarily is a biomarker for Thaumarchaeota, but its δ13C values still cannot be explained solely by autotrophic carbon fixation. Overall the complexity of the results suggests that both organic carbon assimilation (ca. 25% of total carbon) and multiple source(s) of exogenous GDGTs (contributing generally <30% of input to sediments) are necessary to explain the observed δ13CGDGT values. The results suggest caution when interpreting the total inputs of GDGTs to sedimentary records. Biogenic or open-slope sediments, rather than clastic basinal or shallow shelf sediments, are preferred locations for generating minimally-biased GDGT proxy records.

Methanol Metabolism in Pseudomonad C

PubMed Central

Stieglitz, B.; Mateles, R. I.

1973-01-01

Cell suspensions of pseudomonad C, a bacterium capable of growth on methanol as sole carbon source, were able to oxidize methanol, formaldehyde, and formate, although the rates of oxidation for the latter two compounds were much slower. The latter compounds also could not serve as sole carbon sources. Through the use of labeled compounds, it was shown that in the presence of methanol, formaldehyde, formate, and bicarbonate were incorporated into trichloroacetic acid-precipitable material. Hexose phosphate synthetase activity was found, indicating the assimilation of methanol via an allulose pathway. No hydroxypyruvate reductase activity was found, nor was any complex membrane structure observed. Such a combination of characteristics has been observed in an obligate methylotroph (Pseudomonas W1), but pseudomonad C can utilize a variety of non-methyl substrates. Images PMID:4349032

(A)biotic processes control soil carbon dynamics: quantitative assessment of model complexity, stability and response to perturbations for improving ESMs

NASA Astrophysics Data System (ADS)

Georgiou, K.; Abramoff, R. Z.; Harte, J.; Riley, W. J.; Torn, M. S.

2016-12-01

As global temperatures and atmospheric CO2 concentrations continue to increase, soil microbial activity and decomposition of soil organic matter (SOM) are expected to follow suit, potentially limiting soil carbon storage. Traditional global- and ecosystem-scale models simulate SOM decomposition using linear kinetics, which are inherently unable to reproduce carbon-concentration feedbacks, such as priming of native SOM at elevated CO2 concentrations. Recent studies using nonlinear microbial models of SOM decomposition seek to capture these interactions, and several groups are currently integrating these microbial models into Earth System Models (ESMs). However, despite their widespread ability to exhibit nonlinear responses, these models vary tremendously in complexity and, consequently, dynamics. In this study, we explore, both analytically and numerically, the emergent oscillatory behavior and insensitivity of SOM stocks to carbon inputs that have been deemed `unrealistic' in recent microbial models. We discuss the sources of instability in four models of varying complexity, by sequentially reducing complexity of a detailed model that includes microbial physiology, a mineral sorption isotherm, and enzyme dynamics. We also present an alternative representation of microbial turnover that limits population sizes and, thus, reduces oscillations. We compare these models to several long-term carbon input manipulations, including the Detritus Input and Removal Treatment (DIRT) experiments, to show that there are clear metrics that can be used to distinguish and validate the inherent dynamics of each model structure. We find that traditional linear and nonlinear models cannot readily capture the range of long-term responses observed across the DIRT experiments as a direct consequence of their model structures, and that modifying microbial turnover results in more realistic predictions. Finally, we discuss our findings in the context of improving microbial model behavior for inclusion in ESMs.

A Global Modeling Study on Carbonaceous Aerosol Microphysical Characteristics and Radiative Effects

NASA Technical Reports Server (NTRS)

Bauer, S. E.; Menon, S.; Koch, D.; Bond, T. C.; Tsigaridis, K.

2010-01-01

Recently, attention has been drawn towards black carbon aerosols as a short-term climate warming mitigation candidate. However the global and regional impacts of the direct, indirect and semi-direct aerosol effects are highly uncertain, due to the complex nature of aerosol evolution and the way that mixed, aged aerosols interact with clouds and radiation. A detailed aerosol microphysical scheme, MATRIX, embedded within the GISS climate model is used in this study to present a quantitative assessment of the impact of microphysical processes involving black carbon, such as emission size distributions and optical properties on aerosol cloud activation and radiative effects. Our best estimate for net direct and indirect aerosol radiative flux change between 1750 and 2000 is -0.56 W/m2. However, the direct and indirect aerosol effects are quite sensitive to the black and organic carbon size distribution and consequential mixing state. The net radiative flux change can vary between -0.32 to -0.75 W/m2 depending on these carbonaceous particle properties at emission. Taking into account internally mixed black carbon particles let us simulate correct aerosol absorption. Absorption of black carbon aerosols is amplified by sulfate and nitrate coatings and, even more strongly, by organic coatings. Black carbon mitigation scenarios generally showed reduced radiative fluxeswhen sources with a large proportion of black carbon, such as diesel, are reduced; however reducing sources with a larger organic carbon component as well, such as bio-fuels, does not necessarily lead to a reduction in positive radiative flux.

A global modeling study on carbonaceous aerosol microphysical characteristics and radiative effects

NASA Astrophysics Data System (ADS)

Bauer, S. E.; Menon, S.; Koch, D.; Bond, T. C.; Tsigaridis, K.

2010-08-01

Recently, attention has been drawn towards black carbon aerosols as a short-term climate warming mitigation candidate. However the global and regional impacts of the direct, indirect and semi-direct aerosol effects are highly uncertain, due to the complex nature of aerosol evolution and the way that mixed, aged aerosols interact with clouds and radiation. A detailed aerosol microphysical scheme, MATRIX, embedded within the GISS climate model is used in this study to present a quantitative assessment of the impact of microphysical processes involving black carbon, such as emission size distributions and optical properties on aerosol cloud activation and radiative effects. Our best estimate for net direct and indirect aerosol radiative flux change between 1750 and 2000 is -0.56 W/m2. However, the direct and indirect aerosol effects are quite sensitive to the black and organic carbon size distribution and consequential mixing state. The net radiative flux change can vary between -0.32 to -0.75 W/m2 depending on these carbonaceous particle properties at emission. Taking into account internally mixed black carbon particles let us simulate correct aerosol absorption. Absorption of black carbon aerosols is amplified by sulfate and nitrate coatings and, even more strongly, by organic coatings. Black carbon mitigation scenarios generally showed reduced radiative fluxeswhen sources with a large proportion of black carbon, such as diesel, are reduced; however reducing sources with a larger organic carbon component as well, such as bio-fuels, does not necessarily lead to a reduction in positive radiative flux.

Folate-Dependent Purine Nucleotide Biosynthesis in Humans.

PubMed

Baggott, Joseph E; Tamura, Tsunenobu

2015-09-01

Purine nucleotide biosynthesis de novo (PNB) requires 2 folate-dependent transformylases-5'-phosphoribosyl-glycinamide (GAR) and 5'-phosphoribosyl-5-aminoimidazole-4-carboxamide (AICAR) transformylases-to introduce carbon 8 (C8) and carbon 2 (C2) into the purine ring. Both transformylases utilize 10-formyltetrahydrofolate (10-formyl-H4folate), where the formyl-carbon sources include ring-2-C of histidine, 3-C of serine, 2-C of glycine, and formate. Our findings in human studies indicate that glycine provides the carbon for GAR transformylase (exclusively C8), whereas histidine and formate are the predominant carbon sources for AICAR transformylase (C2). Contrary to the previous notion, these carbon sources may not supply a general 10-formyl-H4folate pool, which was believed to equally provide carbons to C8 and C2. To explain these phenomena, we postulate that GAR transformylase is in a complex with the trifunctional folate-metabolizing enzyme (TFM) and serine hydroxymethyltransferase to channel carbons of glycine and serine to C8. There is no evidence for channeling carbons of histidine and formate to AICAR transformylase (C2). GAR transformylase may require the TFM to furnish 10-formyl-H4folate immediately after its production from serine to protect its oxidation to 10-formyldihydrofolate (10-formyl-H2folate), whereas AICAR transformylase can utilize both 10-formyl-H2folate and 10-formyl-H4folate. Human liver may supply AICAR to AICAR transformylase in erythrocytes/erythroblasts. Incorporation of ring-2-C of histidine and formate into C2 of urinary uric acid presented a circadian rhythm with a peak in the morning, which corresponds to the maximum DNA synthesis in the bone marrow, and it may be useful in the timing of the administration of drugs that block PNB for the treatment of cancer and autoimmune disease. © 2015 American Society for Nutrition.

Carbon isotopic characterization of formaldehyde emitted by vehicles in Guangzhou, China

NASA Astrophysics Data System (ADS)

Hu, Ping; Wen, Sheng; Liu, Yonglin; Bi, Xinhui; Chan, Lo Yin; Feng, Jialiang; Wang, Xinming; Sheng, Guoying; Fu, Jiamo

2014-04-01

Formaldehyde (HCHO) is the most abundant carbonyl compound in the atmosphere, and vehicle exhaust emission is one of its important anthropogenic sources. However, there is still uncertainty regarding HCHO flux from vehicle emission as well as from other sources. Herein, automobile source was characterized using HCHO carbon isotopic ratio to assess its contributions to atmospheric flux and demonstrate the complex production/consumption processes during combustion in engine cylinder and subsequent catalytic treatment of exhaust. Vehicle exhausts were sampled under different idling states and HCHO carbon isotopic ratios were measured by gas chromatograph-combustion-isotopic ratio mass spectrometry (GC-C-IRMS). The HCHO directly emitted from stand-alone engines (gasoline and diesel) running at different load was also sampled and measured. The HCHO carbon isotopic ratios were from -30.8 to -25.7‰ for gasoline engine, and from -26.2 to -20.7‰ for diesel engine, respectively. For diesel vehicle without catalytic converter, the HCHO carbon isotopic ratios were -22.1 ± 2.1‰, and for gasoline vehicle with catalytic converter, the ratios were -21.4 ± 0.7‰. Most of the HCHO carbon isotopic ratios were heavier than the fuel isotopic ratios (from -29 to -27‰). For gasoline vehicle, the isotopic fractionation (Δ13C) between HCHO and fuel isotopic ratios was 7.4 ± 0.7‰, which was higher than that of HCHO from stand-alone gasoline engine (Δ13Cmax = 2.7‰), suggesting additional consumption by the catalytic converter. For diesel vehicle without catalytic converter, Δ13C was 5.7 ± 2.0‰, similar to that of stand-alone diesel engine. In general, the carbon isotopic signatures of HCHO emitted from automobiles were not sensitive to idling states or to other vehicle parameters in our study condition. On comparing these HCHO carbon isotopic data with those of past studies, the atmospheric HCHO in a bus station in Guangzhou might mainly come from vehicle emission for the accordance of carbon isotopic data.

Health effects of carbon-containing particulate matter: focus on sources and recent research program results.

PubMed

Rohr, Annette; McDonald, Jacob

2016-02-01

Air pollution is a complex mixture of gas-, vapor-, and particulate-phase materials comprised of inorganic and organic species. Many of these components have been associated with adverse health effects in epidemiological and toxicological studies, including a broad spectrum of carbonaceous atmospheric components. This paper reviews recent literature on the health impacts of organic aerosols, with a focus on specific sources of organic material; it is not intended to be a comprehensive review of all the available literature. Specific emission sources reviewed include engine emissions, wood/biomass combustion emissions, biogenic emissions and secondary organic aerosol (SOA), resuspended road dust, tire and brake wear, and cooking emissions. In addition, recent findings from large toxicological and epidemiological research programs are reviewed in the context of organic PM, including SPHERES, NPACT, NERC, ACES, and TERESA. A review of the extant literature suggests that there are clear health impacts from emissions containing carbon-containing PM, but difficulty remains in apportioning responses to certain groupings of carbonaceous materials, such as organic and elemental carbon, condensed and gas phases, and primary and secondary material. More focused epidemiological and toxicological studies, including increased characterization of organic materials, would increase understanding of this issue.

Comprehensive chemical characterization of industrial PM2.5 from steel industry activities

NASA Astrophysics Data System (ADS)

Sylvestre, Alexandre; Mizzi, Aurélie; Mathiot, Sébastien; Masson, Fanny; Jaffrezo, Jean L.; Dron, Julien; Mesbah, Boualem; Wortham, Henri; Marchand, Nicolas

2017-03-01

Industrial sources are among the least documented PM (Particulate Matter) source in terms of chemical composition, which limits our understanding of their effective impact on ambient PM concentrations. We report 4 chemical emission profiles of PM2.5 for multiple activities located in a vast metallurgical complex. Emissions profiles were calculated as the difference of species concentrations between an upwind and a downwind site normalized by the absolute PM2.5 enrichment between both sites. We characterized the PM2.5 emissions profiles of the industrial activities related to the cast iron (complex 1) and the iron ore conversion processes (complex 2), as well as 2 storage areas: a blast furnace slag area (complex 3) and an ore terminal (complex 4). PM2.5 major fractions (Organic Carbon (OC) and Elemental Carbon (EC), major ions), organic markers as well as metals/trace elements are reported for the 4 industrial complexes. Among the trace elements, iron is the most emitted for the complex 1 (146.0 mg g-1 of PM2.5), the complex 2 (70.07 mg g-1) and the complex 3 (124.4 mg g-1) followed by Al, Mn and Zn. A strong emission of Polycyclic Aromatic Hydrocarbons (PAH), representing 1.3% of the Organic Matter (OM), is observed for the iron ore transformation complex (complex 2) which merges the activities of coke and iron sinter production and the blast furnace processes. In addition to unsubstituted PAHs, sulfur containing PAHs (SPAHs) are also significantly emitted (between 0.011 and 0.068 mg g-1) by the complex 2 and could become very useful organic markers of steel industry activities. For the complexes 1 and 2 (cast iron and iron ore converters), a strong fraction of sulfate ranging from 0.284 to 0.336 g g-1) and only partially neutralized by ammonium, is observed indicating that sulfates, if not directly emitted by the industrial activity, are formed very quickly in the plume. Emission from complex 4 (Ore terminal) are characterized by high contribution of Al (125.7 mg g-1 of PM2.5) but also, in a lesser extent, of Fe, Mn, Ti and Zn. We also highlighted high contribution of calcium ranging from 0.123 to 0.558 g g-1 for all of the industrial complexes under study. Since calcium is also widely used as a proxy of the dust contributions in source apportionment studies, our results suggest that this assumption should be reexamined in environments impacted by industrial emissions.

Carbon nanotubes and other fullerene-related nanocrystals in the environment: A TEM study

NASA Astrophysics Data System (ADS)

Murr, L. E.; Soto, K. F.; Esquivel, E. V.; Bang, J. J.; Guerrero, P. A.; Lopez, D. A.; Ramirez, D. A.

2004-06-01

Carbon nanotubes and other fullerene-related nanocrystals are ubiquitous in the atmospheric environment—both indoor and outdoor. In fact, these nanostructures have been observed even in a 10,000 year-old ice core sample, indicating their natural existence in antiquity, probably as natural gas/methane combustion products. Similar carbon nanotubes and complex carbon nanocrystal aggregates are observed to be emitted from contemporary combustion sources such as kitchen stoves (natural gas and propane), water heater and furnace exhaust vents, natural gas-burning (electric) power plants, and industrial furnace operations, among others. These observations have been made by collecting nanoparticulates and nanocrystal aggregates on carbon/formvar and silicon monoxide/formvarcoated 3 mm grids that were examined with a transmission-electron microscope. This study begins to establish an environmental context for considering the potential impact of future nanostructured particles on human health.

21 CFR 520.1802a - Piperazine-carbon disulfide complex suspension.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 21 Food and Drugs 6 2010-04-01 2010-04-01 false Piperazine-carbon disulfide complex suspension... § 520.1802a Piperazine-carbon disulfide complex suspension. (a) Specifications. Each fluid ounce of suspension contains 7.5 grams of piperazine-carbon disulfide complex. The piperazine-carbon disulfide complex...

21 CFR 520.1802a - Piperazine-carbon disulfide complex suspension.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 21 Food and Drugs 6 2011-04-01 2011-04-01 false Piperazine-carbon disulfide complex suspension... § 520.1802a Piperazine-carbon disulfide complex suspension. (a) Specifications. Each fluid ounce of suspension contains 7.5 grams of piperazine-carbon disulfide complex. The piperazine-carbon disulfide complex...

Fluorescent carbon dots as an efficient siRNA nanocarrier for its interference therapy in gastric cancer cells.

PubMed

Wang, Qing; Zhang, Chunlei; Shen, Guangxia; Liu, Huiyang; Fu, Hualin; Cui, Daxiang

2014-12-30

Fluorescent carbon dots (Cdots) have attracted increasing attention due to their potential applications in sensing, catalysis, and biomedicine. Currently, intensive research has been concentrated on the synthesis and imaging-guided therapy of these benign photoluminescent materials. Meanwhile, Cdots have been explored as nonviral vector for nucleic acid or drug delivery by chemical modification on purpose. We have developed a microwave assisted one-step synthesis of Cdots with citric acid as carbon source and tryptophan (Trp) as both nitrogen source and passivation agent. The Cdots with uniform size show superior water solubility, excellent biocompatibility, and high quantum yield. Afterwards, the PEI (polyethylenimine)-adsorbed Cdots nanoparticles (Cdots@PEI) were applied to deliver Survivin siRNA into human gastric cancer cell line MGC-803. The results have confirmed the nanocarrier exhibited excellent biocompatibility and a significant increase in cellular delivery of siRNA, inducing efficient knockdown for Survivin protein to 6.1%. In addition, PEI@Cdots complexes mediated Survivin silencing, the arrested cell cycle progression in G1 phase as well as cell apoptosis was observed. The Cdots-based and PEI-adsorbed complexes both as imaging agents and siRNA nanocarriers have been developed for Survivin siRNA delivery. And the results indicate that Cdots-based nanocarriers could be utilized in a broad range of siRNA delivery systems for cancer therapy.

Hydrazinylpyridine based highly selective optical sensor for aqueous source of carbonate ions: Electrochemical and DFT studies

NASA Astrophysics Data System (ADS)

Thimaradka, Vikram; Pangannaya, Srikala; Mohan, Makesh; Trivedi, Darshak R.

2018-03-01

A series of new receptors PDZ1-3 based on 2-(arylidenehydrazinyl)pyridines have been designed and synthesized for the detection of biologically and environmentally important ions. The colorimetric detection of CO32 - using neutral organic receptor PDZ-1 has been achieved with characteristic visual colour change from yellow to green accompanied by a large redshift of 215 nm in absorption maxima. UV-Vis spectroscopic and cyclic voltammetric studies reveal the stoichiometry of binding and electrochemistry of host-guest complex formation. The binding constant was found to be 0.77 × 104 M- 2. In addition, electrochemical studies provide an insight into the stability of the complex. DFT studies performed on the PDZ-1 and PDZ-1 - CO32 - complex reveal the binding mechanism involved in the anion detection process. PDZ-1 is highly selective for carbonate and does not show any colorimetric response towards any other anions or cations, while PDZ-2 and PDZ-3 remain inactive in the ion detection process. The limit of detection (LOD) and limit of quantification (LOQ) of PDZ-1 for carbonate was found to be 0.11 mM and 0.36 mM respectively. Considerable binding constant and limit of detection make PDZ-1 to be used as a real time sensor for the detection of carbonate in environmental and biological samples.

Organo-mineral complexation alters carbon and nitrogen cycling in stream microbial assemblages

NASA Astrophysics Data System (ADS)

Hunter, William Ross; Wanek, Wolfgang; Prommer, Judith; Mooshammer, Maria; Battin, Tom

2014-05-01

Inland waters are of global biogeochemical importance receiving carbon inputs of ~ 4.8 Pg C y-1. Of this 12 % is buried, 18 % transported to the oceans, and 70 % supports aquatic secondary production. However, the mechanisms that determine the fate of organic matter (OM) in these systems are poorly defined. One important aspect is the formation of organo-mineral complexes in aquatic systems and their potential as a route for OM transport and burial vs. microbial utilization as organic carbon (C) and nitrogen (N) sources. Organo-mineral particles form by sorption of dissolved OM to freshly eroded mineral surfaces and may contribute to ecosystem-scale particulate OM fluxes. We tested the availability of mineral-sorbed OM as a C & N source for streamwater microbial assemblages and streambed biofilms. Organo-mineral particles were constructed in vitro by sorption of 13C:15N-labelled amino acids to hydrated kaolin particles, and microbial degradation of these particles compared with equivalent doses of 13C:15N-labelled free amino acids. Experiments were conducted in 120 ml mesocosms over 7 days using biofilms and streamwater sampled from the Oberer Seebach stream (Austria), tracing assimilation and mineralization of 13C and 15N labels from mineral-sorbed and dissolved amino acids. Here we present data on the effects of organo-mineral sorption upon amino acid mineralization and its C:N stoichiometry. Organo-mineral sorption had a significant effect upon microbial activity, restricting C and N mineralization by both the biofilm and streamwater treatments. Distinct differences in community response were observed, with both dissolved and mineral-stabilized amino acids playing an enhanced role in the metabolism of the streamwater microbial community. Mineral-sorption of amino acids differentially affected C & N mineralization and reduced the C:N ratio of the dissolved amino acid pool. The present study demonstrates that organo-mineral complexes restrict microbial degradation of OM and may, consequently, alter the carbon and nitrogen cycling dynamics within aquatic ecosystems.

Hydrogen storage and delivery: the carbon dioxide - formic acid couple.

PubMed

Laurenczy, Gábor

2011-01-01

Carbon dioxide and the carbonates, the available natural C1 sources, can be easily hydrogenated into formic acid and formates in water; the rate of this reduction strongly depends on the pH of the solution. This reaction is catalysed by ruthenium(II) pre-catalyst complexes with a large variety of water-soluble phosphine ligands; high conversions and turnover numbers have been realised. Although ruthenium(II) is predominant in these reactions, the iron(II) - tris[(2-diphenylphosphino)-ethyl]phosphine (PP3) complex is also active, showing a new perspective to use abundant and inexpensive iron-based compounds in the CO2 reduction. In the catalytic hydrogenation cycles the in situ formed metal hydride complexes play a key role, their structures with several other intermediates have been proven by multinuclear NMR spectroscopy. In the other hand safe and convenient hydrogen storage and supply is the fundamental question for the further development of the hydrogen economy; and carbon dioxide has been recognised to be a viable H2 vector. Formic acid--containing 4.4 weight % of H2, that is 53 g hydrogen per litre--is suitable for H2 storage; we have shown that in aqueous solutions it can be selectively decomposed into CO-free (CO < 10 ppm) CO2 and H2. The reaction takes place under mild experimental conditions and it is able to generate high pressure H2 (up to 600 bar). The cleavage of HCOOH is catalysed by several hydrophilic Ru(II) phosphine complexes (meta-trisulfonated triphenylphosphine, mTPPTS, being the most efficient one), either in homogeneous systems or as immobilised catalysts. We have also shown that the iron(II)--hydrido tris[(2-diphenylphosphino)ethyl]phosphine complex catalyses with an exceptionally high rate and efficiency (turnover frequency, TOF = 9425 h(-1)mol(-1); turnover number, TON = 92400) the formic acid cleavage, in environmentally friendly propylene carbonate solution, opening the way to use cheap, non-noble metal based catalysts for this reaction, too.

Green Adsorbents for Wastewaters: A Critical Review

PubMed Central

Kyzas, George Z.; Kostoglou, Margaritis

2014-01-01

One of the most serious environmental problems is the existence of hazardous and toxic pollutants in industrial wastewaters. The major hindrance is the simultaneous existence of many/different types of pollutants as (i) dyes; (ii) heavy metals; (iii) phenols; (iv) pesticides and (v) pharmaceuticals. Adsorption is considered to be one of the most promising techniques for wastewater treatment over the last decades. The economic crisis of the 2000s led researchers to turn their interest in adsorbent materials with lower cost. In this review article, a new term will be introduced, which is called “green adsorption”. Under this term, it is meant the low-cost materials originated from: (i) agricultural sources and by-products (fruits, vegetables, foods); (ii) agricultural residues and wastes; (iii) low-cost sources from which most complex adsorbents will be produced (i.e., activated carbons after pyrolysis of agricultural sources). These “green adsorbents” are expected to be inferior (regarding their adsorption capacity) to the super-adsorbents of previous literature (complex materials as modified chitosans, activated carbons, structurally-complex inorganic composite materials etc.), but their cost-potential makes them competitive. This review is a critical approach to green adsorption, discussing many different (maybe in some occasions doubtful) topics such as: (i) adsorption capacity; (ii) kinetic modeling (given the ultimate target to scale up the batch experimental data to fixed-bed column calculations for designing/optimizing commercial processes) and (iii) critical techno-economical data of green adsorption processes in order to scale-up experiments (from lab to industry) with economic analysis and perspectives of the use of green adsorbents. PMID:28788460

An atomic carbon source for high temperature molecular beam epitaxy of graphene.

PubMed

Albar, J D; Summerfield, A; Cheng, T S; Davies, A; Smith, E F; Khlobystov, A N; Mellor, C J; Taniguchi, T; Watanabe, K; Foxon, C T; Eaves, L; Beton, P H; Novikov, S V

2017-07-26

We report the use of a novel atomic carbon source for the molecular beam epitaxy (MBE) of graphene layers on hBN flakes and on sapphire wafers at substrate growth temperatures of ~1400 °C. The source produces a flux of predominantly atomic carbon, which diffuses through the walls of a Joule-heated tantalum tube filled with graphite powder. We demonstrate deposition of carbon on sapphire with carbon deposition rates up to 12 nm/h. Atomic force microscopy measurements reveal the formation of hexagonal moiré patterns when graphene monolayers are grown on hBN flakes. The Raman spectra of the graphene layers grown on hBN and sapphire with the sublimation carbon source and the atomic carbon source are similar, whilst the nature of the carbon aggregates is different - graphitic with the sublimation carbon source and amorphous with the atomic carbon source. At MBE growth temperatures we observe etching of the sapphire wafer surface by the flux from the atomic carbon source, which we have not observed in the MBE growth of graphene with the sublimation carbon source.

Effects of iron and calcium carbonate on the variation and cycling of carbon source in integrated wastewater treatments.

PubMed

Zhimiao, Zhao; Xinshan, Song; Yufeng, Zhao; Yanping, Xiao; Yuhui, Wang; Junfeng, Wang; Denghua, Yan

2017-02-01

Iron and calcium carbonate were added in wastewater treatments as the adjusting agents to improve the contaminant removal performance and regulate the variation of carbon source in integrated treatments. At different temperatures, the addition of the adjusting agents obviously improved the nitrogen and phosphorous removals. TN and TP removals were respectively increased by 29.41% and 23.83% in AC-100 treatment under 1-day HRT. Carbon source from dead algae was supplied as green microbial carbon source and Fe 2+ was supplied as carbon source surrogate. COD concentration was increased to 30mg/L and above, so the problem of the shortage of carbon source was solved. Dead algae and Fe 2+ as carbon source supplement or surrogate played significant role, which was proved by microbial community analysis. According to the denitrification performance in the treatments, dead algae as green microbial carbon source combined with iron and calcium carbonate was the optimal supplement carbon source in wastewater treatment. Copyright © 2016 Elsevier Ltd. All rights reserved.

Production of targeted poly(3-hydroxyalkanoates) copolymers by glycogen accumulating organisms using acetate as sole carbon source.

PubMed

Dai, Yu; Yuan, Zhiguo; Jack, Kevin; Keller, Jurg

2007-05-01

One of the main limitations in bacterial polyhydroxyalkanoate (PHA) production with mixed cultures is the fact that primarily polyhydroxybutyrate (PHB) homopolymers are generated from acetate as the main carbon source, which is brittle and quite fragile. The incorporation of different 3-hydroxyalkanoate (HA) components into the polymers requires the addition of additional carbon sources, leading to extra costs and complexity. In this study, the production of poly(3-hydroxybutyrate (3HB)-co-3-hydroxyvalerate (3HV)-co-3-hydroxy-2-methylvalerate (3HMV)), with 7-35C-mol% of 3HV fractions from acetate as the only carbon source was achieved with the use of glycogen accumulating organisms (GAOs). An enriched GAO culture was obtained in a lab-scale reactor operated under alternating anaerobic and aerobic conditions with acetate fed at the beginning of the anaerobic period. The production of PHAs utilizing the enriched GAO culture was investigated under both aerobic and anaerobic conditions. A polymer content of 14-41% of dry cell weight was obtained. The PHA product accumulated by GAOs under anaerobic conditions contained a relatively constant proportion of non-3HB monomers (30+/-5C-mol%), irrespective of the amount of acetate assimilated. In contrast, under aerobic conditions, GAOs only produced 3HB monomers from acetate causing a gradually decreasing 3HV fraction during this aerobic feeding period. The PHAs were characterized by gel permeation chromatography (GPC) and differential scanning calorimetry (DSC). The data demonstrated that the copolymers possessed similar characteristics to those of commercially available poly(3HB-co-3HV) (PHBV) products. The PHAs produced under solely anaerobic conditions possessed lower melting points and crystallinity, higher molecular weights, and narrower molecular-weight distributions, compared to the aerobically produced polymers. This paper hence demonstrates the significant potential of GAOs to produce high quality polymers from a simple and cheap carbon source, contributing considerably to the growing research body on bacterial PHA production by mixed cultures.

Regulation of Aspergillus nidulans CreA-Mediated Catabolite Repression by the F-Box Proteins Fbx23 and Fbx47.

PubMed

de Assis, Leandro José; Ulas, Mevlut; Ries, Laure Nicolas Annick; El Ramli, Nadia Ali Mohamed; Sarikaya-Bayram, Ozlem; Braus, Gerhard H; Bayram, Ozgur; Goldman, Gustavo Henrique

2018-06-19

The attachment of one or more ubiquitin molecules by SCF ( S kp- C ullin- F -box) complexes to protein substrates targets them for subsequent degradation by the 26S proteasome, allowing the control of numerous cellular processes. Glucose-mediated signaling and subsequent carbon catabolite repression (CCR) are processes relying on the functional regulation of target proteins, ultimately controlling the utilization of this carbon source. In the filamentous fungus Aspergillus nidulans , CCR is mediated by the transcription factor CreA, which modulates the expression of genes encoding biotechnologically relevant enzymes. Although CreA-mediated repression of target genes has been extensively studied, less is known about the regulatory pathways governing CCR and this work aimed at further unravelling these events. The Fbx23 F-box protein was identified as being involved in CCR and the Δ fbx23 mutant presented impaired xylanase production under repressing (glucose) and derepressing (xylan) conditions. Mass spectrometry showed that Fbx23 is part of an SCF ubiquitin ligase complex that is bridged via the GskA protein kinase to the CreA-SsnF-RcoA repressor complex, resulting in the degradation of the latter under derepressing conditions. Upon the addition of glucose, CreA dissociates from the ubiquitin ligase complex and is transported into the nucleus. Furthermore, casein kinase is important for CreA function during glucose signaling, although the exact role of phosphorylation in CCR remains to be determined. In summary, this study unraveled novel mechanistic details underlying CreA-mediated CCR and provided a solid basis for studying additional factors involved in carbon source utilization which could prove useful for biotechnological applications. IMPORTANCE The production of biofuels from plant biomass has gained interest in recent years as an environmentally friendly alternative to production from petroleum-based energy sources. Filamentous fungi, which naturally thrive on decaying plant matter, are of particular interest for this process due to their ability to secrete enzymes required for the deconstruction of lignocellulosic material. A major drawback in fungal hydrolytic enzyme production is the repression of the corresponding genes in the presence of glucose, a process known as carbon catabolite repression (CCR). This report provides previously unknown mechanistic insights into CCR through elucidating part of the protein-protein interaction regulatory system that governs the CreA transcriptional regulator in the reference organism Aspergillus nidulans in the presence of glucose and the biotechnologically relevant plant polysaccharide xylan. Copyright © 2018 de Assis et al.

Matrix approach to uncertainty assessment and reduction for modeling terrestrial carbon cycle

NASA Astrophysics Data System (ADS)

Luo, Y.; Xia, J.; Ahlström, A.; Zhou, S.; Huang, Y.; Shi, Z.; Wang, Y.; Du, Z.; Lu, X.

2017-12-01

Terrestrial ecosystems absorb approximately 30% of the anthropogenic carbon dioxide emissions. This estimate has been deduced indirectly: combining analyses of atmospheric carbon dioxide concentrations with ocean observations to infer the net terrestrial carbon flux. In contrast, when knowledge about the terrestrial carbon cycle is integrated into different terrestrial carbon models they make widely different predictions. To improve the terrestrial carbon models, we have recently developed a matrix approach to uncertainty assessment and reduction. Specifically, the terrestrial carbon cycle has been commonly represented by a series of carbon balance equations to track carbon influxes into and effluxes out of individual pools in earth system models. This representation matches our understanding of carbon cycle processes well and can be reorganized into one matrix equation without changing any modeled carbon cycle processes and mechanisms. We have developed matrix equations of several global land C cycle models, including CLM3.5, 4.0 and 4.5, CABLE, LPJ-GUESS, and ORCHIDEE. Indeed, the matrix equation is generic and can be applied to other land carbon models. This matrix approach offers a suite of new diagnostic tools, such as the 3-dimensional (3-D) parameter space, traceability analysis, and variance decomposition, for uncertainty analysis. For example, predictions of carbon dynamics with complex land models can be placed in a 3-D parameter space (carbon input, residence time, and storage potential) as a common metric to measure how much model predictions are different. The latter can be traced to its source components by decomposing model predictions to a hierarchy of traceable components. Then, variance decomposition can help attribute the spread in predictions among multiple models to precisely identify sources of uncertainty. The highly uncertain components can be constrained by data as the matrix equation makes data assimilation computationally possible. We will illustrate various applications of this matrix approach to uncertainty assessment and reduction for terrestrial carbon cycle models.

The evolution of organic matter in space.

PubMed

Ehrenfreund, Pascale; Spaans, Marco; Holm, Nils G

2011-02-13

Carbon, and molecules made from it, have already been observed in the early Universe. During cosmic time, many galaxies undergo intense periods of star formation, during which heavy elements like carbon, oxygen, nitrogen, silicon and iron are produced. Also, many complex molecules, from carbon monoxide to polycyclic aromatic hydrocarbons, are detected in these systems, like they are for our own Galaxy. Interstellar molecular clouds and circumstellar envelopes are factories of complex molecular synthesis. A surprisingly high number of molecules that are used in contemporary biochemistry on the Earth are found in the interstellar medium, planetary atmospheres and surfaces, comets, asteroids and meteorites and interplanetary dust particles. Large quantities of extra-terrestrial material were delivered via comets and asteroids to young planetary surfaces during the heavy bombardment phase. Monitoring the formation and evolution of organic matter in space is crucial in order to determine the prebiotic reservoirs available to the early Earth. It is equally important to reveal abiotic routes to prebiotic molecules in the Earth environments. Materials from both carbon sources (extra-terrestrial and endogenous) may have contributed to biochemical pathways on the Earth leading to life's origin. The research avenues discussed also guide us to extend our knowledge to other habitable worlds.

KSC-2014-3053

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Representatives of social media outlets are welcomed to Vandenberg Air Force Base in California for the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2, by John Yembrick, NASA's social media manager. Launch of OCO-2 aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. The social media users selected to attend the two-day event on June 30 and July 1 are given the same access as news media in an effort to align their experience with those of traditional media. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3061

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Annmarie Eldering, Orbiting Carbon Observatory-2 deputy project scientist at NASA's Jet Propulsion Laboratory, discusses the observatory, or OCO-2, with representatives of social media outlets attending a NASA Social at Vandenberg Air Force Base in California. Launch of OCO-2 aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. The social media users selected to attend the two-day event on June 30 and July 1 are given the same access as news media in an effort to align their experience with those of traditional media. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3056

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Ralph Basilio, project manager for NASA's Orbiting Carbon Observatory-2 at NASA's Jet Propulsion Laboratory, briefs representatives of social media outlets on the observatory, or OCO-2, at a NASA Social held on Vandenberg Air Force Base in California. Launch of OCO-2 aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. The social media users selected to attend the two-day event on June 30 and July 1 are given the same access as news media in an effort to align their experience with those of traditional media. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3057

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Representatives from social media outlets are provided with a series of briefings on NASA's Orbiting Carbon Observatory-2, or OCO-2, at a NASA Social held on Vandenberg Air Force Base in California. Launch of OCO-2 aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. The social media users selected to attend the two-day event on June 30 and July 1 are given the same access as news media in an effort to align their experience with those of traditional media. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3055

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Ralph Basilio, project manager for NASA's Orbiting Carbon Observatory-2 from NASA's Jet Propulsion Laboratory, discusses the observatory, or OCO-2, with representatives of social media outlets attending a NASA Social at Vandenberg Air Force Base in California. Launch of OCO-2 aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. The social media users selected to attend the two-day event on June 30 and July 1 are given the same access as news media in an effort to align their experience with those of traditional media. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3058

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Ken Jucks, project executive for NASA's Orbiting Carbon Observatory-2 from NASA Headquarters, discusses the observatory, or OCO-2, with representatives of social media outlets attending a NASA Social at Vandenberg Air Force Base in California. Launch of OCO-2 aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. The social media users selected to attend the two-day event on June 30 and July 1 are given the same access as news media in an effort to align their experience with those of traditional media. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3060

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Randy Pollock, project architect for NASA's Orbiting Carbon Observatory-2, or OCO-2, from NASA's Jet Propulsion Laboratory, or JPL, and Pavani Peddada, OCO-2 engineer from JPL, discuss the observatory with representatives of social media outlets attending a NASA Social at Vandenberg Air Force Base in California. Launch of OCO-2 aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. The social media users selected to attend the two-day event on June 30 and July 1 are given the same access as news media in an effort to align their experience with those of traditional media. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3044

NASA Image and Video Library

2014-06-29

VANDENBERG AIR FORCE BASE, Calif. – A representative of the news media asks a question at a prelaunch news conference at Vandenberg Air Force Base in California prior to the launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. Participating in the news conference are Betsy Edwards, OCO-2 project executive at NASA Headquarters Tim Dunn, launch manager for NASA's Launch Services Program Vernon Thorp, United Launch Alliance program manager for NASA Missions and Ralph Basilio, OCO-2 project manager at NASA's Jet Propulsion Laboratory. Launch aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

Bounding the role of black carbon in the climate system: A scientific assessment

NASA Astrophysics Data System (ADS)

Bond, T. C.; Doherty, S. J.; Fahey, D. W.; Forster, P. M.; Berntsen, T.; DeAngelo, B. J.; Flanner, M. G.; Ghan, S.; Kärcher, B.; Koch, D.; Kinne, S.; Kondo, Y.; Quinn, P. K.; Sarofim, M. C.; Schultz, M. G.; Schulz, M.; Venkataraman, C.; Zhang, H.; Zhang, S.; Bellouin, N.; Guttikunda, S. K.; Hopke, P. K.; Jacobson, M. Z.; Kaiser, J. W.; Klimont, Z.; Lohmann, U.; Schwarz, J. P.; Shindell, D.; Storelvmo, T.; Warren, S. G.; Zender, C. S.

2013-06-01

carbon aerosol plays a unique and important role in Earth's climate system. Black carbon is a type of carbonaceous material with a unique combination of physical properties. This assessment provides an evaluation of black-carbon climate forcing that is comprehensive in its inclusion of all known and relevant processes and that is quantitative in providing best estimates and uncertainties of the main forcing terms: direct solar absorption; influence on liquid, mixed phase, and ice clouds; and deposition on snow and ice. These effects are calculated with climate models, but when possible, they are evaluated with both microphysical measurements and field observations. Predominant sources are combustion related, namely, fossil fuels for transportation, solid fuels for industrial and residential uses, and open burning of biomass. Total global emissions of black carbon using bottom-up inventory methods are 7500 Gg yr-1 in the year 2000 with an uncertainty range of 2000 to 29000. However, global atmospheric absorption attributable to black carbon is too low in many models and should be increased by a factor of almost 3. After this scaling, the best estimate for the industrial-era (1750 to 2005) direct radiative forcing of atmospheric black carbon is +0.71 W m-2 with 90% uncertainty bounds of (+0.08, +1.27) W m-2. Total direct forcing by all black carbon sources, without subtracting the preindustrial background, is estimated as +0.88 (+0.17, +1.48) W m-2. Direct radiative forcing alone does not capture important rapid adjustment mechanisms. A framework is described and used for quantifying climate forcings, including rapid adjustments. The best estimate of industrial-era climate forcing of black carbon through all forcing mechanisms, including clouds and cryosphere forcing, is +1.1 W m-2 with 90% uncertainty bounds of +0.17 to +2.1 W m-2. Thus, there is a very high probability that black carbon emissions, independent of co-emitted species, have a positive forcing and warm the climate. We estimate that black carbon, with a total climate forcing of +1.1 W m-2, is the second most important human emission in terms of its climate forcing in the present-day atmosphere; only carbon dioxide is estimated to have a greater forcing. Sources that emit black carbon also emit other short-lived species that may either cool or warm climate. Climate forcings from co-emitted species are estimated and used in the framework described herein. When the principal effects of short-lived co-emissions, including cooling agents such as sulfur dioxide, are included in net forcing, energy-related sources (fossil fuel and biofuel) have an industrial-era climate forcing of +0.22 (-0.50 to +1.08) W m-2 during the first year after emission. For a few of these sources, such as diesel engines and possibly residential biofuels, warming is strong enough that eliminating all short-lived emissions from these sources would reduce net climate forcing (i.e., produce cooling). When open burning emissions, which emit high levels of organic matter, are included in the total, the best estimate of net industrial-era climate forcing by all short-lived species from black-carbon-rich sources becomes slightly negative (-0.06 W m-2 with 90% uncertainty bounds of -1.45 to +1.29 W m-2). The uncertainties in net climate forcing from black-carbon-rich sources are substantial, largely due to lack of knowledge about cloud interactions with both black carbon and co-emitted organic carbon. In prioritizing potential black-carbon mitigation actions, non-science factors, such as technical feasibility, costs, policy design, and implementation feasibility play important roles. The major sources of black carbon are presently in different stages with regard to the feasibility for near-term mitigation. This assessment, by evaluating the large number and complexity of the associated physical and radiative processes in black-carbon climate forcing, sets a baseline from which to improve future climate forcing estimates.

Bounding the Role of Black Carbon in the Climate System: a Scientific Assessment

NASA Technical Reports Server (NTRS)

Bond, T. C.; Doherty, S. J.; Fahey, D. W.; Forster, P. M.; Bernsten, T.; DeAngelo, B. J.; Flanner, M. G.; Ghan, S.; Karcher, B.; Koch, D.;

Genomic Reconstruction of Carbohydrate Utilization Capacities in Microbial-Mat Derived Consortia

PubMed Central

Leyn, Semen A.; Maezato, Yukari; Romine, Margaret F.; Rodionov, Dmitry A.

2017-01-01

Two nearly identical unicyanobacterial consortia (UCC) were previously isolated from benthic microbial mats that occur in a heliothermal saline lake in northern Washington State. Carbohydrates are a primary source of carbon and energy for most heterotrophic bacteria. Since CO2 is the only carbon source provided, the cyanobacterium must provide a source of carbon to the heterotrophs. Available genomic sequences for all members of the UCC provide opportunity to investigate the metabolic routes of carbon transfer between autotroph and heterotrophs. Here, we applied a subsystem-based comparative genomics approach to reconstruct carbohydrate utilization pathways and identify glycohydrolytic enzymes, carbohydrate transporters and pathway-specific transcriptional regulators in 17 heterotrophic members of the UCC. The reconstructed metabolic pathways include 800 genes, near a one-fourth of which encode enzymes, transporters and regulators with newly assigned metabolic functions resulting in discovery of novel functional variants of carbohydrate utilization pathways. The in silico analysis revealed the utilization capabilities for 40 carbohydrates and their derivatives. Two Halomonas species demonstrated the largest number of sugar catabolic pathways. Trehalose, sucrose, maltose, glucose, and beta-glucosides are the most commonly utilized saccharides in this community. Reconstructed regulons for global regulators HexR and CceR include central carbohydrate metabolism genes in the members of Gammaproteobacteria and Alphaproteobacteria, respectively. Genomics analyses were supplemented by experimental characterization of metabolic phenotypes in four isolates derived from the consortia. Measurements of isolate growth on the defined medium supplied with individual carbohydrates confirmed most of the predicted catabolic phenotypes. Not all consortia members use carbohydrates and only a few use complex polysaccharides suggesting a hierarchical carbon flow from cyanobacteria to each heterotroph. In summary, the genomics-based identification of carbohydrate utilization capabilities provides a basis for future experimental studies of carbon flow in UCC. PMID:28751880

Exposure to Glycolytic Carbon Sources Reveals a Novel Layer of Regulation for the MalT Regulon

PubMed Central

Reimann, Sylvia A.; Wolfe, Alan J.

2011-01-01

Bacteria adapt to changing environments by means of tightly coordinated regulatory circuits. The use of synthetic lethality, a genetic phenomenon in which the combination of two nonlethal mutations causes cell death, facilitates identification and study of such circuitry. In this study, we show that the E. coli ompR malT con double mutant exhibits a synthetic lethal phenotype that is environmentally conditional. MalTcon, the constitutively active form of the maltose system regulator MalT, causes elevated expression of the outer membrane porin LamB, which leads to death in the absence of the osmoregulator OmpR. However, the presence and metabolism of glycolytic carbon sources, such as sorbitol, promotes viability and unveils a novel layer of regulation within the complex circuitry that controls maltose transport and metabolism. PMID:21912549

Exposure to Glycolytic Carbon Sources Reveals a Novel Layer of Regulation for the MalT Regulon.

PubMed

Reimann, Sylvia A; Wolfe, Alan J

2011-01-01

Bacteria adapt to changing environments by means of tightly coordinated regulatory circuits. The use of synthetic lethality, a genetic phenomenon in which the combination of two nonlethal mutations causes cell death, facilitates identification and study of such circuitry. In this study, we show that the E. coli ompR malT(con) double mutant exhibits a synthetic lethal phenotype that is environmentally conditional. MalT(con), the constitutively active form of the maltose system regulator MalT, causes elevated expression of the outer membrane porin LamB, which leads to death in the absence of the osmoregulator OmpR. However, the presence and metabolism of glycolytic carbon sources, such as sorbitol, promotes viability and unveils a novel layer of regulation within the complex circuitry that controls maltose transport and metabolism.

Constraining regional scale carbon budgets at the US West Coast using a high-resolution atmospheric inverse modeling approach

NASA Astrophysics Data System (ADS)

Goeckede, M.; Michalak, A. M.; Vickers, D.; Turner, D.; Law, B.

2009-04-01

The study presented is embedded within the NACP (North American Carbon Program) West Coast project ORCA2, which aims at determining the regional carbon balance of the US states Oregon, California and Washington. Our work specifically focuses on the effect of disturbance history and climate variability, aiming at improving our understanding of e.g. drought stress and stand age on carbon sources and sinks in complex terrain with fine-scale variability in land cover types. The ORCA2 atmospheric inverse modeling approach has been set up to capture flux variability on the regional scale at high temporal and spatial resolution. Atmospheric transport is simulated coupling the mesoscale model WRF (Weather Research and Forecast) with the STILT (Stochastic Time Inverted Lagrangian Transport) footprint model. This setup allows identifying sources and sinks that influence atmospheric observations with highly resolved mass transport fields and realistic turbulent mixing. Terrestrial biosphere carbon fluxes are simulated at spatial resolutions of up to 1km and subdaily timesteps, considering effects of ecoregion, land cover type and disturbance regime on the carbon budgets. Our approach assimilates high-precision atmospheric CO2 concentration measurements and eddy-covariance data from several sites throughout the model domain, as well as high-resolution remote sensing products (e.g. LandSat, MODIS) and interpolated surface meteorology (DayMet, SOGS, PRISM). We present top-down modeling results that have been optimized using Bayesian inversion, reflecting the information on regional scale carbon processes provided by the network of high-precision CO2 observations. We address the level of detail (e.g. spatial and temporal resolution) that can be resolved by top-down modeling on the regional scale, given the uncertainties introduced by various sources for model-data mismatch. Our results demonstrate the importance of accurate modeling of carbon-water coupling, with the representation of water availability and drought stress playing a dominant role to capture spatially variable CO2 exchange rates in a region characterized by strong climatic gradients.

Fluorescent probes for "off-on" highly sensitive detection of Hg²⁺ and L-cysteine based on nitrogen-doped carbon dots.

PubMed

Zhang, Yi; Cui, Peipei; Zhang, Feng; Feng, Xiaoting; Wang, Yaling; Yang, Yongzhen; Liu, Xuguang

2016-05-15

Fluorescent nitrogen-doped carbon dots (NCDs) were synthesized by a facile, and low-cost one-step hydrothermal strategy using citric acid as carbon source and ammonia solution as nitrogen source for the first time. The obtained NCDs show stable blue fluorescence with a high quantum yield of 35.4%, along with the fluorescence lifetime of ca. 6.75 ns. Most importantly, Hg(2+) can completely quench the fluorescence of NCDs as a result of the formation of a non-fluorescent stable NCDs-Hg(2+) complex. Static fluorescence quenching towards Hg(2+) is proved by the Stern-Volmer equation, ultraviolet-visible absorption spectra, temperature dependent quenching and fluorescence lifetime measurements. Subsequently, the fluorescence of the NCDs-Hg(2+) system is completely recovered with the addition L-cysteine (L-Cys) owing to the dissociation of NCDs-Hg(2+) complex to form a more stable Hg(2+)-L-Cys complex by Hg(2+)-S bonding. Therefore, such NCDs can be used as an effective fluorescent "turn-off" probe for rapid, rather highly selective and sensitive detection of Hg(2+), with a limit of detection (LOD) as low as 1.48 nM and a linear detection range of 0-10 μM. Interestingly, NCDs-Hg(2+) system can be conveniently employed as a fluorescent "turn-on" sensor for highly selective and sensitive detection of L-Cys with a low LOD of 0.79 nM and a wide linear detection range of 0-50 μM. Further, the sensitivity of NCDs to Hg(2+) is preserved in tap water with a LOD of 1.65 nM and a linear detection range of 0-10 μM. Copyright © 2016 Elsevier B.V. All rights reserved.

Transcriptional regulation of respiration in yeast metabolizing differently repressive carbon substrates.

PubMed

Fendt, Sarah-Maria; Sauer, Uwe

2010-02-18

Depending on the carbon source, Saccharomyces cerevisiae displays various degrees of respiration. These range from complete respiration as in the case of ethanol, to almost complete fermentation, and thus very low degrees of respiration on glucose. While many key regulators are known for these extreme cases, we focus here on regulators that are relevant at intermediate levels of respiration. We address this question by linking the functional degree of respiration to transcriptional regulation via enzyme abundances. Specifically, we investigated aerobic batch cultures with the differently repressive carbon sources glucose, mannose, galactose and pyruvate. Based on 13C flux analysis, we found that the respiratory contribution to cellular energy production was largely absent on glucose and mannose, intermediate on galactose and highest on pyruvate. In vivo abundances of 40 respiratory enzymes were quantified by GFP-fusions under each condition. During growth on the partly and fully respired substrates galactose and pyruvate, several TCA cycle and respiratory chain enzymes were significantly up-regulated. From these enzyme levels and the known regulatory network structure, we determined the probability for a given transcription factor to cause the coordinated expression changes. The most probable transcription factors to regulate the different degrees of respiration were Gcr1p, Cat8p, the Rtg-proteins and the Hap-complex. For the latter three ones we confirmed their importance for respiration by quantifying the degree of respiration and biomass yields in the corresponding deletion strains. Cat8p is required for wild-type like respiration, independent of its known activation of gluconeogenic genes. The Rtg-proteins and the Hap-complex are essential for wild-type like respiration under partially respiratory conditions. Under fully respiratory conditions, the Hap-complex, but not the Rtg-proteins are essential for respiration.

Greening coal: breakthroughs and challenges in carbon capture and storage.

PubMed

Stauffer, Philip H; Keating, Gordon N; Middleton, Richard S; Viswanathan, Hari S; Berchtold, Kathryn A; Singh, Rajinder P; Pawar, Rajesh J; Mancino, Anthony

2011-10-15

Like it or not, coal is here to stay, for the next few decades at least. Continued use of coal in this age of growing greenhouse gas controls will require removing carbon dioxide from the coal waste stream. We already remove toxicants such as sulfur dioxide and mercury, and the removal of CO₂ is the next step in reducing the environmental impacts of using coal as an energy source (i.e., greening coal). This paper outlines some of the complexities encountered in capturing CO₂ from coal, transporting it large distances through pipelines, and storing it safely underground.

Carbon Dioxide Effects Research and Assessment Program. The role of tropical forests on the world carbon cycle

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brown, S.; Lugo, A. E.; Liegel, B.

1980-08-01

Tropical forests constitute about half of the world's forest and are characterized by rapid rates of organic matter turnover and high storages of organic matter. Tropical forests are considered to be one of the most significant terrestrial elements in the equation that balances the carbon cycle of the world. As discussed in the paper by Tosi, tropical and subtropical latitudes are more complex in terms of climate and vegetation composition than temperate and boreal latitudes. The implications of the complexity of the tropics and the disregard of this complexity by many scientists is made evident in the paper by Brownmore » and Lugo which shows that biomass estimates for tropical ecosystems have been overestimated by at least 100%. The paper by Brown shows that that rates of succession in the tropics are extremely rapid in terms of the ability of moist and wet forests to accumulate organic matter. Yet, in arid tropical Life Zones succession is slow. This leads to the idea that the question of whether tropical forests are sinks or sources of carbon must be analyzed in relation to Life Zones and to intensities of human activity in these Zones. The paper by Lugo presents conceptual models to illustrate this point and the paper by Tosi shows how land uses in the tropics also correspond to Life Zone characteristics. The ultimate significance of land use to the question of the carbon balance in a large region is addressed in the paper by Detwiler and Hall.« less

Export and losses of blue carbon-derived particulate and dissolved organic carbon (POC and DOC) in blackwater river-dominated and particle-dominated estuaries

NASA Astrophysics Data System (ADS)

Arellano, A. R.; Bianchi, T. S.; Osburn, C. L.; D'Sa, E. J.; Oviedo Vargas, D.; Ward, N. D.; Joshi, I.; Ko, D. S.

2016-12-01

Globally, coastal blue carbon environments (wetlands, seagrass beds and mangroves) sequester an estimated 67-215 Tg C yr-1. While most blue carbon research has focused on carbon burial/stocks and habitat fragmentation of these communities, few studies have examined the export and loss of blue carbon sources of particulate organic matter (POM) and dissolved organic matter (DOM) to adjacent coastal waters. These shifts in losses of DOM and POM are also partly due to large-scale changes in land-use and climate change. Due to the complexity of vascular plant inputs to estuarine systems (e.g. terrestrial vs. blue carbon), being able to separate blue carbon sources of POM and DOM are critical. Here, we investigate the temporal variability of the abundance, sources and breakdown of particulate and dissolved organic carbon (POC and DOC) in particle-dominated (Barataria Bay) and blackwater river-dominated (Apalachicola Bay) estuaries in the northern Gulf of Mexico, using bulk carbon, dissolved lignin phenols, δ13C and dissolved CO2. The range of DOC:POC ratios for Barataria and Apalachicola bays were 0.5-3.1 and 2.3-57.0, respectively. δ13C-POC values were more depleted in Apalachicola (x̅=-27.3‰) compared to those in Barataria (x̅=-24.8‰), and C:N ratios were higher in Apalachicola (x̅=10.8) than in Barataria (x̅=9.3). Although there was no significant temporal variability with δ13C-POC in both systems, Barataria Bay had the highest POC (0.08-0.23 mM) and C:N (7.0-13.4) values during spring, when enhanced southerly winds likely resulted in higher resuspension and marsh erosion rates. Additionally, in Apalachicola, the lowest C:N values (6.2-16.1) were observed during the dry season when fluvial DOM inputs were minimal. The highest dissolved lignin phenol and DOC (0.10-2.98 mM) concentrations in Apalachicola occurred during the wet season, reflecting the importance of riverine inputs to this system. In particular, the Carabelle River plume region had C:V and S:V values that indicated woody inputs (long-leaf pine communities), while the bay proper/East Bay were more indicative of blue carbon sources. Spatial and temporal variability of dissolved CO2 concentrations will be discussed as it relates to possible linkages with the export and losses of blue carbon-derived DOC and POC.

Carbon as a source for yellow luminescence in GaN: Isolated C{sub N} defect or its complexes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Christenson, Sayre G.; Xie, Weiyu; Sun, Y. Y., E-mail: suny4@rpi.edu

2015-10-07

We study three carbon defects in GaN, isolated C{sub N} and its two complexes with donors C{sub N}–O{sub N}, and C{sub N}–Si{sub Ga}, as a cause of the yellow luminescence using accurate hybrid density functional calculation, which includes the semi-core Ga 3d electrons as valence electrons and uses a larger 300-atom supercell. We show that the isolated C{sub N} defect yields good agreement with experiment on the photoluminescence (PL) peak position, zero-phonon line, and thermodynamic defect transition level. We find that the defect state of the complexes that is involved in the PL process is the same as that ofmore » the C{sub N} defect. The role of the positively charged donors (O{sub N} or Si{sub Ga}) next to C{sub N} is to blue-shift the PL peak. Therefore, the complexes cannot be responsible for the same PL peak as isolated C{sub N}. Our detailed balance analysis further suggests that under thermal equilibrium at typical growth temperature, the concentration of isolated C{sub N} defect is orders of magnitude higher than the defect complexes, which is a result of the small binding energy in these complexes.« less

High Laccase Expression by Trametes versicolor in a Simulated Textile Effluent with Different Carbon Sources and PHs.

PubMed

Ottoni, Cristiane; Simões, Marta F; Fernandes, Sara; Santos, Cledir R; Lima, Nelson

2016-08-02

Textile effluents are highly polluting and have variable and complex compositions. They can be extremely complex, with high salt concentrations and alkaline pHs. A fixed-bed bioreactor was used in the present study to simulate a textile effluent treatment, where the white-rot fungus, Trametes versicolor, efficiently decolourised the azo dye Reactive Black 5 over 28 days. This occurred under high alkaline conditions, which is unusual, but advantageous, for successful decolourisation processes. Active dye decolourisation was maintained by operation in continuous culture. Colour was eliminated during the course of operation and maximum laccase (Lcc) activity (80.2 U∙L(-1)) was detected after glycerol addition to the bioreactor. Lcc2 gene expression was evaluated with different carbon sources and pH values based on reverse transcriptase-PCR (polymerase chain reaction). Glycerol was shown to promote the highest lcc2 expression at pH 5.5, followed by sucrose and then glucose. The highest levels of expression occurred between three and four days, which corroborate the maximum Lcc activity observed for sucrose and glycerol on the bioreactor. These results give new insights into the use of T. versicolor in textile dye wastewater treatment with high pHs.

Isotopic measurements (C,N,O) of detonation soot produced from labeled and unlabeled Composition B-3 indicate source of solid carbon residues

NASA Astrophysics Data System (ADS)

Podlesak, David; Manner, Virginia; Amato, Ronald; Dattelbaum, Dana; Gusavsen, Richard; Huber, Rachel

2017-06-01

Detonation of HE is an exothermic process whereby metastable complex molecules are converted to simple stable molecules such as H2 O, N2, CO, CO2, and solid carbon. The solid carbon contains various allotropes such as detonation nanodiamonds, graphite, and amorphous carbon. It is well known that certain HE formulations such as Composition B (60% RDX, 40% TNT) produce greater amounts of solid carbon than other more oxygen-balanced formulations. To develop a greater understanding of how formulation and environment influence solid carbon formation, we synthesized TNT and RDX with 13 C and 15 N at levels slightly above natural abundance levels. Synthesized RDX and TNT were mixed at a ratio of 60:40 to form Composition B and solid carbon residues were collected from detonations of isotopically-labeled as well as un-labelled Composition B. The raw HE and detonation residues were analyzed isotopically for C, N, O isotopic compositions. We will discuss differences between treatments groups as a function of formulation and environment. LA-UR - 17-21266.

Temporally delineated sources of major chemical species in high Arctic snow

NASA Astrophysics Data System (ADS)

Macdonald, Katrina M.; Sharma, Sangeeta; Toom, Desiree; Chivulescu, Alina; Platt, Andrew; Elsasser, Mike; Huang, Lin; Leaitch, Richard; Chellman, Nathan; McConnell, Joseph R.; Bozem, Heiko; Kunkel, Daniel; Duan Lei, Ying; Jeong, Cheol-Heon; Abbatt, Jonathan P. D.; Evans, Greg J.

2018-03-01

Long-range transport of aerosol from lower latitudes to the high Arctic may be a significant contributor to climate forcing in the Arctic. To identify the sources of key contaminants entering the Canadian High Arctic an intensive campaign of snow sampling was completed at Alert, Nunavut, from September 2014 to June 2015. Fresh snow samples collected every few days were analyzed for black carbon, major ions, and metals, and this rich data set provided an opportunity for a temporally refined source apportionment of snow composition via positive matrix factorization (PMF) in conjunction with FLEXPART (FLEXible PARTicle dispersion model) potential emission sensitivity analysis. Seven source factors were identified: sea salt, crustal metals, black carbon, carboxylic acids, nitrate, non-crustal metals, and sulfate. The sea salt and crustal factors showed good agreement with expected composition and primarily northern sources. High loadings of V and Se onto Factor 2, crustal metals, was consistent with expected elemental ratios, implying these metals were not primarily anthropogenic in origin. Factor 3, black carbon, was an acidic factor dominated by black carbon but with some sulfate contribution over the winter-haze season. The lack of K+ associated with this factor, a Eurasian source, and limited known forest fire events coincident with this factor's peak suggested a predominantly anthropogenic combustion source. Factor 4, carboxylic acids, was dominated by formate and acetate with a moderate correlation to available sunlight and an oceanic and North American source. A robust identification of this factor was not possible; however, atmospheric photochemical reactions, ocean microlayer reaction, and biomass burning were explored as potential contributors. Factor 5, nitrate, was an acidic factor dominated by NO3-, with a likely Eurasian source and mid-winter peak. The isolation of NO3- on a separate factor may reflect its complex atmospheric processing, though the associated source region suggests possibly anthropogenic precursors. Factor 6, non-crustal metals, showed heightened loadings of Sb, Pb, and As, and correlation with other metals traditionally associated with industrial activities. Similar to Factor 3 and 5, this factor appeared to be largely Eurasian in origin. Factor 7, sulfate, was dominated by SO42- and MS with a fall peak and high acidity. Coincident volcanic activity and northern source regions may suggest a processed SO2 source of this factor.

Evaluating vertical concentration profile of carbon source released from slow-releasing carbon source tablets and in situ biological nitrate denitrification activity

NASA Astrophysics Data System (ADS)

Yeum, Y.; HAN, K.; Yoon, J.; Lee, J. H.; Song, K.; Kang, J. H.; Park, C. W.; Kwon, S.; Kim, Y.

2017-12-01

Slow-releasing carbon source tablets were manufactured during the design of a small-scale in situ biological denitrification system to reduce high-strength nitrate (> 30 mg N/L) from a point source such as livestock complexes. Two types of slow-releasing tablets, precipitating tablet (PT, apparent density of 2.0 g/mL) and floating tablet (FT), were prepared to achieve a vertically even distribution of carbon source (CS) in a well and an aquifer. Hydroxypropyl methylcellulose (HPMC) was used to control the release rate, and microcrystalline cellulose pH 101 (MCC 101) was added as a binder. The #8 sand was used as a precipitation agent for the PTs, and the floating agents for the FTs were calcium carbonate and citric acid. FTs floated within 30 min. and remained in water because of the buoyance from carbon dioxide, which formed during the acid-base reaction between citric acid and calcium carbonate. The longevities of PTs with 300 mg of HPMC and FTs with 400 mg of HPMC were 25.4 days and 37.3 days, respectively. We assessed vertical CS profile in a continuous flowing physical aquifer model (release test, RT) and its efficiency on biological nitrate denitrification (denitrification test, DT). During the RT, PTs, FTs and a tracer (as 1 mg rhodamine B/L) were initially injected into a well of physical aquifer model (PAM). Concentrations of CS and the tracer were monitored along the streamline in the PAM to evaluate vertical profile of CS. During the DT, the same experiment was performed as RT, except continuous injection of solution containing 30 mg N/L into the PAM to evaluate biological denitrification activity. As a result of RT, temporal profiles of CS were similar at 3 different depths of monitoring wells. These results suggest that simultaneous addition of PT and FT be suitable for achieving a vertically even distribution of the CS in the injection well and an aquifer. In DT, similar profile of CS was detected in the injection well, and nitrate was biologically denitrified at downstream of the injection well. In conclusion, addition of PT and FT into a well under natural gradient condition may be an effective means for remediating high-strength nitrate in groundwater.

A global modeling study on carbonaceous aerosol microphysical characteristics and radiative forcing

NASA Astrophysics Data System (ADS)

Bauer, S. E.; Menon, S.; Koch, D.; Bond, T. C.; Tsigaridis, K.

2010-02-01

Recently, attention has been drawn towards black carbon aerosols as a short-term climate warming mitigation candidate. However the global and regional impacts of the direct, cloud-indirect and semi-direct forcing effects are highly uncertain, due to the complex nature of aerosol evolution and the way that mixed, aged aerosols interact with clouds and radiation. A detailed aerosol microphysical scheme, MATRIX, embedded within the GISS climate model is used in this study to present a quantitative assessment of the impact of microphysical processes involving black carbon, such as emission size distributions and optical properties on aerosol cloud activation and radiative forcing. Our best estimate for net direct and indirect aerosol radiative forcing between 1750 and 2000 is -0.56 W/m2. However, the direct and indirect aerosol effects are quite sensitive to the black and organic carbon size distribution and consequential mixing state. The net radiative forcing can vary between -0.32 to -0.75 W/m2 depending on these carbonaceous particle properties at emission. Assuming that sulfates, nitrates and secondary organics form a coating around a black carbon core, rather than forming a uniformly mixed particle, changes the overall net aerosol radiative forcing from negative to positive. Taking into account internally mixed black carbon particles let us simulate correct aerosol absorption. Black carbon absorption is amplified by sulfate and nitrate coatings, but even more strongly by organic coatings. Black carbon mitigation scenarios generally showed reduced radiative forcing when sources with a large proportion of black carbon, such as diesel, are reduced; however reducing sources with a larger organic carbon component as well, such as bio-fuels, does not necessarily lead to climate benefits.

Cyclic occurrence of fire and its role in carbon dynamics along an edaphic moisture gradient in longleaf pine ecosystems.

PubMed

Whelan, Andrew; Mitchell, Robert; Staudhammer, Christina; Starr, Gregory

2013-01-01

Fire regulates the structure and function of savanna ecosystems, yet we lack understanding of how cyclic fire affects savanna carbon dynamics. Furthermore, it is largely unknown how predicted changes in climate may impact the interaction between fire and carbon cycling in these ecosystems. This study utilizes a novel combination of prescribed fire, eddy covariance (EC) and statistical techniques to investigate carbon dynamics in frequently burned longleaf pine savannas along a gradient of soil moisture availability (mesic, intermediate and xeric). This research approach allowed us to investigate the complex interactions between carbon exchange and cyclic fire along the ecological amplitude of longleaf pine. Over three years of EC measurement of net ecosystem exchange (NEE) show that the mesic site was a net carbon sink (NEE = -2.48 tonnes C ha(-1)), while intermediate and xeric sites were net carbon sources (NEE = 1.57 and 1.46 tonnes C ha(-1), respectively), but when carbon losses due to fuel consumption were taken into account, all three sites were carbon sources (10.78, 7.95 and 9.69 tonnes C ha(-1) at the mesic, intermediate and xeric sites, respectively). Nonetheless, rates of NEE returned to pre-fire levels 1-2 months following fire. Consumption of leaf area by prescribed fire was associated with reduction in NEE post-fire, and the system quickly recovered its carbon uptake capacity 30-60 days post fire. While losses due to fire affected carbon balances on short time scales (instantaneous to a few months), drought conditions over the final two years of the study were a more important driver of net carbon loss on yearly to multi-year time scales. However, longer-term observations over greater environmental variability and additional fire cycles would help to more precisely examine interactions between fire and climate and make future predictions about carbon dynamics in these systems.

Cyclic Occurrence of Fire and Its Role in Carbon Dynamics along an Edaphic Moisture Gradient in Longleaf Pine Ecosystems

PubMed Central

Whelan, Andrew; Mitchell, Robert; Staudhammer, Christina; Starr, Gregory

2013-01-01

Fire regulates the structure and function of savanna ecosystems, yet we lack understanding of how cyclic fire affects savanna carbon dynamics. Furthermore, it is largely unknown how predicted changes in climate may impact the interaction between fire and carbon cycling in these ecosystems. This study utilizes a novel combination of prescribed fire, eddy covariance (EC) and statistical techniques to investigate carbon dynamics in frequently burned longleaf pine savannas along a gradient of soil moisture availability (mesic, intermediate and xeric). This research approach allowed us to investigate the complex interactions between carbon exchange and cyclic fire along the ecological amplitude of longleaf pine. Over three years of EC measurement of net ecosystem exchange (NEE) show that the mesic site was a net carbon sink (NEE = −2.48 tonnes C ha−1), while intermediate and xeric sites were net carbon sources (NEE = 1.57 and 1.46 tonnes C ha−1, respectively), but when carbon losses due to fuel consumption were taken into account, all three sites were carbon sources (10.78, 7.95 and 9.69 tonnes C ha−1 at the mesic, intermediate and xeric sites, respectively). Nonetheless, rates of NEE returned to pre-fire levels 1–2 months following fire. Consumption of leaf area by prescribed fire was associated with reduction in NEE post-fire, and the system quickly recovered its carbon uptake capacity 30–60 days post fire. While losses due to fire affected carbon balances on short time scales (instantaneous to a few months), drought conditions over the final two years of the study were a more important driver of net carbon loss on yearly to multi-year time scales. However, longer-term observations over greater environmental variability and additional fire cycles would help to more precisely examine interactions between fire and climate and make future predictions about carbon dynamics in these systems. PMID:23335986

Characterization and regulation of glycine transport in Fusarium oxysporum var. lini.

PubMed

Castro, I M; Lima, A A; Nascimento, A F; Ruas, M M; Nicoli, J R; Brandão, R L

1996-08-01

Glycine was transported in Fusarium oxysporum cells, grown on glycine as the sole source of carbon and nitrogen, by a facilitated diffusion transport system with a half-saturation constant (Ks) of 11 mM and a maximum velocity (Vmax) of 1.2 mM (g dry weight)-1 h-1 at pH 5.0 and 26 degrees C. Under conditions of nitrogen starvation, the same system was present together with a high-affinity one (Ks) of about 47 microM and Vmax of about 60 microM (g dry weight)-1 h-1). The low-affinity system was more specific than the high-affinity system. Cells grown on gelatine showed the same behavior. In cells grown on glucose-gelatine medium, the low-affinity system was poorly expressed even after carbon and nitrogen starvation. Moreover, addition of glucose to cells grown on glycine and resuspended in mineral medium caused an increase of the glycine transport probably due to a boost in protein synthesis. This stimulation did not affect the Ks of the low-affinity system. These results demonstrate that, as is the case for other eukaryotic systems, F. oxysporum glycine transport is under control of nitrogen sources but its regulation by carbon sources appears to be more complex.

Development of a stationary chest tomosynthesis system using carbon nanotube x-ray source array

NASA Astrophysics Data System (ADS)

Shan, Jing

X-ray imaging system has shown its usefulness for providing quick and easy access of imaging in both clinic settings and emergency situations. It greatly improves the workflow in hospitals. However, the conventional radiography systems, lacks 3D information in the images. The tissue overlapping issue in the 2D projection image result in low sensitivity and specificity. Both computed tomography and digital tomosynthesis, the two conventional 3D imaging modalities, requires a complex gantry to mechanically translate the x-ray source to various positions. Over the past decade, our research group has developed a carbon nanotube (CNT) based x-ray source technology. The CNT x-ray sources allows compacting multiple x-ray sources into a single x-ray tube. Each individual x-ray source in the source array can be electronically switched. This technology allows development of stationary tomographic imaging modalities without any complex mechanical gantries. The goal of this work is to develop a stationary digital chest tomosynthesis (s-DCT) system, and implement it for a clinical trial. The feasibility of s-DCT was investigated. It is found that the CNT source array can provide sufficient x-ray output for chest imaging. Phantom images have shown comparable image qualities as conventional DCT. The s-DBT system was then used to study the effects of source array configurations and tomosynthesis image quality, and the feasibility of a physiological gated s-DCT. Using physical measures for spatial resolution, the 2D source configuration was shown to have improved depth resolution and comparable in-plane resolution. The prospective gated tomosynthesis images have shown substantially reduction of image blur associated with lung motions. The system was also used to investigate the feasibility of using s-DCT as a diagnosis and monitoring tools for cystic fibrosis patients. A new scatter reduction methods for s-DCT was also studied. Finally, a s-DCT system was constructed by retrofitting the source array to a Carestream digital radiography system. The system passed the electrical and radiation safety tests, and was installed in Marsico Hall. The patient trial started in March of 2015, and the first patient was successfully imaged.

A defined, glucose-limited mineral medium for the cultivation of Listeria spp.

PubMed

Schneebeli, Rudolf; Egli, Thomas

2013-04-01

Members of the genus Listeria are fastidious bacteria with respect to their nutritional requirements, and several minimal media described in the literature fail to support growth of all Listeria spp. Furthermore, strict limitation by a single nutrient, e.g., the carbon source, has not been demonstrated for any of the published minimal media. This is an important prerequisite for defined studies of growth and physiology, including "omics." Based on a theoretical analysis of previously published mineral media for Listeria, an improved, well-balanced growth medium was designed. It supports the growth, not only of all tested Listeria monocytogenes strains, but of all other Listeria species, with the exception of L. ivanovii. The growth performance of L. monocytogenes strain Scott A was tested in the newly designed medium; glucose served as the only carbon and energy source for growth, whereas neither the supplied amino acids nor the buffering and complexing components (MOPS [morpholinepropanesulfonic acid] and EDTA) supported growth. Omission of amino acids, trace elements, or vitamins, alone or in combination, resulted in considerably reduced biomass yields. Furthermore, we monitored the specific growth rates of various Listeria strains cultivated in the designed mineral medium and compared them to growth in complex medium (brain heart infusion broth [BHI]). The novel mineral medium was optimized for the commonly used strain L. monocytogenes Scott A to achieve optimum cell yields and maximum specific growth rates. This mineral medium is the first published synthetic medium for Listeria that has been shown to be strictly carbon (glucose) limited.

The North American Energy System: Chapter 3 of SOCCR-2

NASA Astrophysics Data System (ADS)

Gurney, K. R.; Marcotullio, P. J.; McGlynn, E.; Bruhwiler, L.; Davis, K. J.; Davis, S. J.; Engel-Cox, J.; Field, J.; Gately, C.; Kammen, D. M.; McMahon, J.; Morrow, W.; Torrie, R.

2017-12-01

North America (Canada, Mexico and the United States), has a large and complex energy system, which in this case includes the extraction and conversion of primary energy sources and their storage, transmission, distribution and ultimate end use in the building, transportation and industrial sectors. The presentation assesses the contribution of this energy system to the carbon cycle. The assessment includes the identification of CO2 emissions from fossil fuel use in the different end use, changes over the past 10 years (since the last SOCCR) and the drivers of change. The assessment focuses on our understanding of the energy trends and system feedback dynamics, key drivers of change as a basis for carbon management. The energy systems' carbon emissions from the North American system are placed in global context and a review of scenarios into the future emissions levels, which demonstrate the requirements for de-carbonization in the medium and longer term.

Cyanobacterial reuse of extracellular organic carbon in microbial mats

PubMed Central

Stuart, Rhona K; Mayali, Xavier; Lee, Jackson Z; Craig Everroad, R; Hwang, Mona; Bebout, Brad M; Weber, Peter K; Pett-Ridge, Jennifer; Thelen, Michael P

2016-01-01

Cyanobacterial organic matter excretion is crucial to carbon cycling in many microbial communities, but the nature and bioavailability of this C depend on unknown physiological functions. Cyanobacteria-dominated hypersaline laminated mats are a useful model ecosystem for the study of C flow in complex communities, as they use photosynthesis to sustain a more or less closed system. Although such mats have a large C reservoir in the extracellular polymeric substances (EPSs), the production and degradation of organic carbon is not well defined. To identify extracellular processes in cyanobacterial mats, we examined mats collected from Elkhorn Slough (ES) at Monterey Bay, California, for glycosyl and protein composition of the EPS. We found a prevalence of simple glucose polysaccharides containing either α or β (1,4) linkages, indicating distinct sources of glucose with differing enzymatic accessibility. Using proteomics, we identified cyanobacterial extracellular enzymes, and also detected activities that indicate a capacity for EPS degradation. In a less complex system, we characterized the EPS of a cyanobacterial isolate from ES, ESFC-1, and found the extracellular composition of biofilms produced by this unicyanobacterial culture were similar to that of natural mats. By tracing isotopically labeled EPS into single cells of ESFC-1, we demonstrated rapid incorporation of extracellular-derived carbon. Taken together, these results indicate cyanobacteria reuse excess organic carbon, constituting a dynamic pool of extracellular resources in these mats. PMID:26495994

The Rewiring of Ubiquitination Targets in a Pathogenic Yeast Promotes Metabolic Flexibility, Host Colonization and Virulence

PubMed Central

Childers, Delma S.; Raziunaite, Ingrida; Mol Avelar, Gabriela; Mackie, Joanna; Budge, Susan; Stead, David; Gow, Neil A. R.; Lenardon, Megan D.; Ballou, Elizabeth R.; MacCallum, Donna M.; Brown, Alistair J. P.

2016-01-01

Efficient carbon assimilation is critical for microbial growth and pathogenesis. The environmental yeast Saccharomyces cerevisiae is “Crabtree positive”, displaying a rapid metabolic switch from the assimilation of alternative carbon sources to sugars. Following exposure to sugars, this switch is mediated by the transcriptional repression of genes (carbon catabolite repression) and the turnover (catabolite inactivation) of enzymes involved in the assimilation of alternative carbon sources. The pathogenic yeast Candida albicans is Crabtree negative. It has retained carbon catabolite repression mechanisms, but has undergone posttranscriptional rewiring such that gluconeogenic and glyoxylate cycle enzymes are not subject to ubiquitin-mediated catabolite inactivation. Consequently, when glucose becomes available, C. albicans can continue to assimilate alternative carbon sources alongside the glucose. We show that this metabolic flexibility promotes host colonization and virulence. The glyoxylate cycle enzyme isocitrate lyase (CaIcl1) was rendered sensitive to ubiquitin-mediated catabolite inactivation in C. albicans by addition of a ubiquitination site. This mutation, which inhibits lactate assimilation in the presence of glucose, reduces the ability of C. albicans cells to withstand macrophage killing, colonize the gastrointestinal tract and cause systemic infections in mice. Interestingly, most S. cerevisiae clinical isolates we examined (67%) have acquired the ability to assimilate lactate in the presence of glucose (i.e. they have become Crabtree negative). These S. cerevisiae strains are more resistant to macrophage killing than Crabtree positive clinical isolates. Moreover, Crabtree negative S. cerevisiae mutants that lack Gid8, a key component of the Glucose-Induced Degradation complex, are more resistant to macrophage killing and display increased virulence in immunocompromised mice. Thus, while Crabtree positivity might impart a fitness advantage for yeasts in environmental niches, the more flexible carbon assimilation strategies offered by Crabtree negativity enhance the ability of yeasts to colonize and infect the mammalian host. PMID:27073846

Tracing Carbon Flow from Primary Production to a Gulf Coast Salt Marsh Consumer, the Seaside Sparrow (Ammodramus maritimus)

NASA Astrophysics Data System (ADS)

Johnson, J. J.; Polito, M. J.; Olin, J.

2016-02-01

Determining the relative contributions of primary producers to salt marsh food webs is fundamental to understanding how these systems are structured. Biomarkers such as bulk carbon isotopes (13C/12C) and fatty acids have become popular tracers of trophic dynamics, based on the principle that the composition of biomarkers in consumer tissues is a reflection of the composition of these same biomarkers in a consumer's diet. However, the use of bulk stable isotope and fatty acid analyses to assess carbon flow in food webs is often hampered by confounding factors such as isotopic fractionation and fatty acid modifications that can occur between trophic levels. In contrast, compound-specific stable isotope analysis of amino acids may offer a more precise tracking of carbon flow through complex food webs. This is because the isotopic values of essential amino acids in consumer tissues are assimilated largely unchanged from their primary sources at the base of the food web. The aim of this study was to test the consistency of three different methods (bulk carbon stable isotope, fatty acid and compound-specific stable isotope analyses) while examining the carbon source pool underlying the diet of a common marsh consumer, the seaside sparrow (A. maritimus). This comparison allows us to gain a better idea of the relative merits of these analytical methods and contribute to a clearer model of overall trophic dynamics in a salt marsh food web.

Light element production by low energy nuclei from massive stars

NASA Technical Reports Server (NTRS)

Vangioni-Flam, E.; Casse, M.; Ramaty, R.

1997-01-01

The Orion complex is a source of gamma rays attributed to the de-excitation of fast carbon and oxygen nuclei excited through interactions with ambient hydrogen and helium. This has consequences for the production and evolution of light isotopes in the Galaxy, as massive stars appear as prolific sources of C-O rich low energy nuclei. The different stages of massive star evolution are considered in relation to the acceleration of nuclei to moderate energies. It is concluded that the low energy nuclear component originating from massive stars plays a larger role than the usual Galactic cosmic rays in shaping the evolution of Li-6, Be-9, B-10 and B-11, especially in the early Galactic evolution. The enhancement of the B-11/B-10 ratio observed in meteorites and in the interstellar medium is attributed to the interaction of low energy carbon nuclei with ambient H and to a lesser degree, to neutrino spallation.

Filtered cathodic arc deposition with ion-species-selective bias.

PubMed

Anders, André; Pasaja, Nitisak; Sansongsiri, Sakon

2007-06-01

A dual-cathode arc plasma source was combined with a computer-controlled bias amplifier to synchronize substrate bias with the pulsed production of plasma. In this way, bias can be applied in a material-selective way. The principle has been applied to the synthesis of metal-doped diamondlike carbon films, where the bias was applied and adjusted when the carbon plasma was condensing and the substrate was at ground when the metal was incorporated. In doing so, excessive sputtering by energetic metal ions can be avoided while the sp(3)sp(2) ratio can be adjusted. It is shown that the resistivity of the film can be tuned by this species-selective bias; Raman spectroscopy was used to confirm expected changes of the amorphous ta-C:Mo films. The species-selective bias principle could be extended to multiple material plasma sources and complex materials.

Improving conceptual models of water and carbon transfer through peat

USGS Publications Warehouse

McKenzie, Jeffery M.; Siegel, Donald I.; Rosenberry, Donald O.; Baird, Andrew J.; Belyea, Lisa R.; Comas, Xavier; Reeve, A.S.; Slater, Lee D.

2009-01-01

Northern peatlands store 500 × 1015 g of organic carbon and are very sensitive to climate change. There is a strong conceptual model of sources, sinks, and pathways of carbon within peatlands, but challenges remain both in understanding the hydrogeology and the linkages between carbon cycling and peat pore water flow. In this chapter, research findings from the glacial Lake Agassiz peatlands are used to develop a conceptual framework for peatland hydrogeology and identify four challenges related to northern peatlands yet to be addressed: (1) develop a better understanding of the extent and net impact of climate-driven groundwater flushing in peatlands; (2) quantify the complexities of heterogeneity on pore water flow and, in particular, reconcile contradictions between peatland hydrogeologic interpretations and isotopic data; (3) understand the hydrogeologic implications of free-phase methane production, entrapment, and release in peatlands; and (4) quantify the impact of arctic and subarctic warming on peatland hydrogeology and its linkage to carbon cycling.

Evaluation of the potential for operating carbon neutral WWTPs in China.

PubMed

Hao, Xiaodi; Liu, Ranbin; Huang, Xin

2015-12-15

Carbon neutrality is starting to become a hot topic for wastewater treatment plants (WWTPs) all over the world, and carbon neutral operations have emerged in some WWTPs. Although China is still struggling to control its water pollution, carbon neutrality will definitely become a top priority for WWTPs in the near future. In this review, the potential for operating carbon neutral WWTPs in China is technically evaluated. Based on the A(2)/O process of a typical municipal WWTP, an evaluation model is first configured, which couples the COD/nutrient removals (mass balance) with the energy consumption/recovery (energy balance). This model is then applied to evaluate the potential of the organic (COD) energy with regards to carbon neutrality. The model's calculations reveal that anaerobic digestion of excess sludge can only provide some 50% of the total amount of energy consumption. Water source heat pumps (WSHP) can effectively convert the thermal energy contained in wastewater to heat WWTPs and neighbourhood buildings, which can supply a net electrical equivalency of 0.26 kWh when 1 m(3) of the effluent is cooled down by 1 °C. Photovoltaic (PV) technology can generate a limited amount of electricity, barely 10% of the total energy consumption. Moreover, the complexity of installing solar panels on top of tanks makes PV technology almost not worth the effort. Overall, therefore, organic and thermal energy sources can effectively supply enough electrical equivalency for China to approach to its target with regards to carbon neutral operations. Copyright © 2015 Elsevier Ltd. All rights reserved.

Assessing the impact of industrial source emissions on atmospheric carbonaceous aerosol concentrations using routine monitoring networks.

PubMed

Sheesley, Rebecca J; Schauer, James J; Orf, Marya L

2010-02-01

Industrial sources can have a significant but poorly defined impact on ambient particulate matter concentrations in select areas. Detailed emission profiles are often not available and are hard to develop because of the diversity of emissions across time and space at large industrial complexes. A yearlong study was conducted in an industrial area in Detroit, MI, which combined real-time particle mass (tapered element oscillating microbalance) and black carbon (aetholometer) measurements with molecular marker measurements of monthly average concentrations as well as daily concentrations of select high pollution days. The goal of the study was to use the real-time data to define days in which the particulate matter concentration in the atmosphere was largely impacted by local source emissions and to use daily speciation data to derive emission profiles for the industrial source. When combined with motor vehicle exhaust, wood smoke and road dust profiles, the industrial source profile was used to determine the contribution of the local industrial source to the total organic carbon (OC) concentrations using molecular marker-chemical mass balance modeling (MM-CMB). The MM-CMB analysis revealed that the industrial source had minimal impact on the monthly average carbonaceous aerosol concentration, but contributed approximately 2 microg m(-3), or a little over one-third of the total OC, on select high-impact days.

Carbonate ions and arsenic dissolution by groundwater

USGS Publications Warehouse

Kim, M.-J.; Nriagu, J.; Haack, S.

2000-01-01

Samples of Marshall Sandstone, a major source of groundwater with elevated arsenic levels in southeast Michigan, were exposed to bicarbonate ion under controlled chemical conditions. In particular, effects of pH and redox conditions on arsenic release were evaluated. The release of arsenic from the aquifer rock was strongly related to the bicarbonate concentration in the leaching solution. The results obtained suggest that the carbonation of arsenic sulfide minerals, including orpiment (As2S3) and realgar (As2S2), is an important process in leaching arsenic into groundwater under anaerobic conditions. The arseno-carbonate complexes formed, believed to be As(CO3)2-, As(CO3)(OH)2-, and AsCO3+, are stable in groundwater. The reaction of ferrous ion with the thioarsenite from carbonation process can result in the formation of arsenopyrite which is a common mineral in arsenic-rich aquifers.Samples of Marshall Sandstone, a major source of groundwater with elevated arsenic levels in southeast Michigan, were exposed to bicarbonate ion under controlled chemical conditions. In particular, effects of pH and redox conditions on arsenic release were evaluated. The release of arsenic from the aquifer rock was strongly related to the bicarbonate concentration in the leaching solution. The results obtained suggest that the carbonation of arsenic sulfide minerals, including orpiment (As2S3) and realgar (As2S2), is an important process in leaching arsenic into groundwater under anaerobic conditions. The arseno-carbonate complexes formed, believed to be As(CO3)2-, As(CO3)(OH)2-, and AsCO3+, are stable in groundwater. The reaction of ferrous ion with the thioarsenite from carbonation process can result in the formation of arsenopyrite which is a common mineral in arsenic-rich aquifers.The role of bicarbonate in leaching arsenic into groundwater was investigated by conducting batch experiments using core samples of Marshall Sandstone from southeast Michigan and different bicarbonate solutions. The effects of pH and redox conditions on As dissolution were examined. Results showed that As was not leached significantly out of the Marshall Sandstone samples after 3 d using either deionized water or groundwater, but As was leached efficiently by sodium bicarbonate, potassium bicarbonate, and ferric chloride solutions. The leaching rate with sodium bicarbonate was about 25% higher than that with potassium bicarbonate. The data indicated that bicarbonate ion was involved primarily in As dissolution and that hydroxyl radical ion did not affect As dissolution to any significant degree. The amount of As leached was dependent upon the sodium bicarbonate concentration, increasing with reaction time for each concentration. Significant As leaching was found in the extreme pH ranges of <1.9 and 8.0-10.4. The resulting arseno-carbonate complexes formed were stable in groundwater.

Typhoon impacts on chemical weathering source provenance of a High Standing Island watershed, Taiwan

NASA Astrophysics Data System (ADS)

Meyer, Kevin J.; Carey, Anne E.; You, Chen-Feng

2017-10-01

Chemical weathering source provenance changes associated with Typhoon Mindulle (2004) were identified for the Choshui River Watershed in west-central Taiwan using radiogenic Sr isotope (87Sr/86Sr) and major ion chemistry analysis of water samples collected before, during, and following the storm event. Storm water sampling over 72 h was conducted in 3 h intervals, allowing for novel insight into weathering regime changes in response to intense rainfall events. Chemical weathering sources were determined to be bulk silicate and disseminated carbonate minerals at the surface and silicate contributions from deep thermal waters. Loss on ignition analysis of collected rock samples indicate disseminated carbonate can compose over 25% by weight of surface mineralogy, but typically makes up ∼2-3% of watershed rock. 87Sr/86Sr and major element molar ratios indicate that Typhoon Mindulle caused a weathering regime switch from normal flow incorporating a deep thermal signature to that of a system dominated by surface weathering. The data suggest release of silicate solute rich soil pore waters during storm events, creating a greater relative contribution of silicate weathering to the solute load during periods of increased precipitation and runoff. Partial depletion of this soil solute reservoir and possible erosion enhanced carbonate weathering lead to increased importance of carbonates to the weathering regime as the storm continues. Major ion data indicate that complex mica weathering (muscovite, biotite, illite, chlorite) may represent an important silicate weathering pathway in the watershed. Deep thermal waters represent an important contribution to river solutes during normal non-storm flow conditions. Sulfuric acid sourced from pyrite weathering is likely a major weathering agent in the Choshui River watershed.

Carbon quantum dots and a method of making the same

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zidan, Ragaiy; Teprovich, Joseph A.; Washington, Aaron L.

The present invention is directed to a method of preparing a carbon quantum dot. The carbon quantum dot can be prepared from a carbon precursor, such as a fullerene, and a complex metal hydride. The present invention also discloses a carbon quantum dot made by reacting a carbon precursor with a complex metal hydride and a polymer containing a carbon quantum dot made by reacting a carbon precursor with a complex metal hydride.

A New Biomarker Proxy for Palaeo-pCO2 Reconstruction in Ancient Sediments

NASA Astrophysics Data System (ADS)

Pancost, R. D.; Magness, S.; Maxwell, J. R.

2001-12-01

The carbon isotopic composition of marine organic matter has commonly been used in chemostratigraphy or as a proxy for ancient pCO2 levels. Both of these goals require that the source of organic matter be well defined, and in the case of palaeo-pCO2 investigations, the organic matter must be derived ultimately from aquatic photoautotrophs. However, additional sources, including terrestrial biomass, heterotrophs, or bacteria, can also contribute to total organic carbon (TOC). In the past decade, numerous workers have attempted to refine organic carbon isotope records using the isotopic composition of individual compounds (biomarkers) rather than the TOC. The appeal of this approach is that by examining specific biomarkers, a signal diagnostic for photoautotrophic organisms can be obtained. For compound-specific isotope analyses to be most effective, the compounds analysed must have a relatively specific source. Among the most commonly used biomarkers in palaeo-pCO2 investigations are alkenones, long-chain ketones derived exclusively from certain species of haptophyte algae. However, alkenones are absent in rocks older than the Jurassic and either absent or present in low abundances in rocks older than the Miocene. Thus, in older rocks, other biomarkers, including steranes (derived from eukaryotic sterols), phytane (presumably derived from chlorophyll), and n-alkanes (derived from algal macromolecules), are used. Unfortunately, these compounds can have alternative sources and become less reliable as isotopic proxies for photoautotrophs with increasing thermal maturity and complexity of the hydrocarbon distribution. Here we propose the use of a maleimides (1H-pyrrole-2,5-diones) as a new biomarker class for evaluating past changes in photoautotroph carbon isotopic compositions. Maleimides have three key advantages over other biomarkers in ancient rocks. First, they are degradation products of chlorophyll and have no known alternative origins in marine sediments. Second, because of their unique structure, they can be readily isolated from other organic components facilitating the determination of accurate carbon isotope ratios. Finally, the pyrrole structure is relatively stable insuring that maleimides survive even in thermally mature rocks. We have applied the analysis of maleimides to investigations of sediments from the Kupferschiefer (Permian), Vena del Gesso (Messinian) and Livello Bonarelli (Cenomanian-Turonian boundary) formations. In all three cases, the carbon isotopic compositions of selected maleimides exhibit shifts predicted by either carbonate or other biomarker carbon isotope profiles.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Apps, John A.; Wilkin, Richard T.

This report contains a series of tables summarizing the thermodynamic properties of aqueous carbonate complexes and solid carbonate phases of the following elements: arsenic (As), barium (Ba), cadmium (Cd), chromium (Cr), cobalt (Co), copper (Cu), iron (Fe), lead (Pb), manganese (Mn), mercury (Hg), nickel (Ni) thallium (Tl), uranium (U) and zinc (Zn). Most of these elements are potentially hazardous as defined by extant primary drinking water standards of the United States Environmental Protection Agency (EPA). The remainder are not considered hazardous, but are either listed by EPA under secondary standards, or because they can adversely affect drinking water quality. Additionalmore » tables are included giving the thermodynamic properties for carbonates of the alkali metal and alkali earth elements, sodium (Na), potassium (K), magnesium (Mg), calcium (Ca), and strontium (Sr), because of their value in developing correlative models to estimate the thermodynamic properties of carbonate minerals for which no such data currently exist. The purpose in creating the tables in this report is to provide future investigators with a convenient source for selecting and tracing the sources of thermodynamic data of the above listed elements for use in modeling their geochemical behavior in “underground sources of drinking water” (USDW). The incentive for doing so lies with a heightened concern over the potential consequences of the proposed capture and storage of carbon dioxide (CO2) generated by fossil fuel fired power plants in deep subsurface reservoirs. If CO2 were to leak from such reservoirs, it could migrate upward and contaminate USDWs with undesirable, but undetermined, consequences to water quality. The EPA, Office of Research and Development, through an Interagency Agreement with the U.S. Department of Energy at the Lawrence Berkeley National Laboratory, funded the preparation of this report.« less

Forensic analysis of explosives using isotope ratio mass spectrometry (IRMS)--preliminary study on TATP and PETN.

PubMed

Benson, Sarah J; Lennard, Christopher J; Maynard, Philip; Hill, David M; Andrew, Anita S; Roux, Claude

2009-06-01

The application of isotopic techniques to investigations requiring the provision of evidence to a Court is limited. The objective of this research was to investigate the application of light stable isotopes and isotope ratio mass spectrometry (IRMS) to solve complex forensic cases by providing a level of discrimination not achievable utilising traditional forensic techniques. Due to the current threat of organic peroxide explosives, such as triacetone triperoxide (TATP), research was undertaken to determine the potential of IRMS to differentiate samples of TATP that had been manufactured utilising different starting materials and/or manufacturing processes. In addition, due to the prevalence of pentaerythritoltetranitrate (PETN) in detonators, detonating cord, and boosters, the potential of the IRMS technique to differentiate PETN samples from different sources was also investigated. Carbon isotope values were measured in fourteen TATP samples, with three definite groups appearing in the initial sample set based on the carbon data alone. Four additional TATP samples (in a second set of samples) were distinguishable utilising the carbon and hydrogen isotopic compositions individually, and also in combination with the oxygen isotope values. The 3D plot of the carbon, oxygen and hydrogen data demonstrated the clear discrimination of the four samples of TATP. The carbon and nitrogen isotope values measured from fifteen PETN samples, allowed samples from different sources to be readily discriminated. This paper demonstrates the successful application of IRMS to the analysis of explosives of forensic interest to assist in discriminating samples from different sources. This research represents a preliminary evaluation of the IRMS technique for the measurement of stable isotope values in TATP and PETN samples, and supports the dedication of resources for a full evaluation of this application in order to achieve Court reportable IRMS results.

KSC-2014-3059

NASA Image and Video Library

2014-06-30

VANDENBERG AIR FORCE BASE, Calif. – Col. Keith Balts, 30th Space Wing commander at Vandenberg Air Force Base in California, and Michael "Mic" Woltman, senior vehicle systems engineer for the Launch Services Program at NASA's Kennedy Space Center in Florida, discuss the upcoming launch of NASA's Orbiting Carbon Observatory-2, or OCO-2, with representatives of social media outlets attending a NASA Social at Vandenberg. Launch of OCO-2 aboard a United Launch Alliance Delta II rocket from Space Launch Complex 2 is scheduled for 5:56 a.m. EDT on July 1. The social media users selected to attend the two-day event on June 30 and July 1 are given the same access as news media in an effort to align their experience with those of traditional media. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Ben Smegelsky

KSC-2014-3118

NASA Image and Video Library

2014-07-02

VANDENBERG AIR FORCE BASE, Calif. – Representatives of news and social media outlets participate in a post-launch news conference at Vandenberg Air Force Base in California following the successful launch of NASA's Orbiting Carbon Observatory-2, or OCO-2. On the dais, from left, are Ralph Basilio, OCO-2 project manager at NASA's Jet Propulsion Laboratory Mike Miller, senior vice president, Science and Environmental Satellite Programs, Orbital Sciences Space Systems Group and Geoff Yoder, deputy associate administrator for Programs, Science Mission Directorate, NASA Headquarters. Liftoff of OCO-2 from Space Launch Complex 2 aboard a United Launch Alliance Delta II rocket was on schedule at 5:56 a.m. EDT on July 2 following the repair of the pad's water suppression system, which failed on the first launch attempt July 1. OCO-2 is NASA’s first mission dedicated to studying atmospheric carbon dioxide, the leading human-produced greenhouse gas driving changes in Earth’s climate. OCO-2 will provide a new tool for understanding the human and natural sources of carbon dioxide emissions and the natural "sinks" that absorb carbon dioxide and help control its buildup. The observatory will measure the global geographic distribution of these sources and sinks and study their changes over time. To learn more about OCO-2, visit http://www.nasa.gov/oco2. Photo credit: NASA/Kim Shiflett

Mesoscale carbon sequestration site screening and CCS infrastructure analysis.

PubMed

Keating, Gordon N; Middleton, Richard S; Stauffer, Philip H; Viswanathan, Hari S; Letellier, Bruce C; Pasqualini, Donatella; Pawar, Rajesh J; Wolfsberg, Andrew V

2011-01-01

We explore carbon capture and sequestration (CCS) at the meso-scale, a level of study between regional carbon accounting and highly detailed reservoir models for individual sites. We develop an approach to CO(2) sequestration site screening for industries or energy development policies that involves identification of appropriate sequestration basin, analysis of geologic formations, definition of surface sites, design of infrastructure, and analysis of CO(2) transport and storage costs. Our case study involves carbon management for potential oil shale development in the Piceance-Uinta Basin, CO and UT. This study uses new capabilities of the CO(2)-PENS model for site screening, including reservoir capacity, injectivity, and cost calculations for simple reservoirs at multiple sites. We couple this with a model of optimized source-sink-network infrastructure (SimCCS) to design pipeline networks and minimize CCS cost for a given industry or region. The CLEAR(uff) dynamical assessment model calculates the CO(2) source term for various oil production levels. Nine sites in a 13,300 km(2) area have the capacity to store 6.5 GtCO(2), corresponding to shale-oil production of 1.3 Mbbl/day for 50 years (about 1/4 of U.S. crude oil production). Our results highlight the complex, nonlinear relationship between the spatial deployment of CCS infrastructure and the oil-shale production rate.

21 CFR 520.1802b - Piperazine-carbon disulfide complex boluses.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 21 Food and Drugs 6 2010-04-01 2010-04-01 false Piperazine-carbon disulfide complex boluses. 520....1802b Piperazine-carbon disulfide complex boluses. (a) Specifications. Each bolus contains 20 grams of piperazine-carbon disulfide complex. (b) Sponsor. See 000009 in § 510.600(c) of this chapter. (c) Conditions...

21 CFR 520.1802c - Piperazine-carbon disulfide complex with phenothiazine suspension.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 21 Food and Drugs 6 2010-04-01 2010-04-01 false Piperazine-carbon disulfide complex with... ANIMAL DRUGS § 520.1802c Piperazine-carbon disulfide complex with phenothiazine suspension. (a) Specifications. Each fluid ounce contains 5 grams of piperazine-carbon disulfide complex and 0.83 gram of...

21 CFR 520.1802c - Piperazine-carbon disulfide complex with phenothiazine suspension.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 21 Food and Drugs 6 2011-04-01 2011-04-01 false Piperazine-carbon disulfide complex with... ANIMAL DRUGS § 520.1802c Piperazine-carbon disulfide complex with phenothiazine suspension. (a) Specifications. Each fluid ounce contains 5 grams of piperazine-carbon disulfide complex and 0.83 gram of...

Design Constraints on a Synthetic Metabolism

PubMed Central

Bilgin, Tugce; Wagner, Andreas

2012-01-01

A metabolism is a complex network of chemical reactions that converts sources of energy and chemical elements into biomass and other molecules. To design a metabolism from scratch and to implement it in a synthetic genome is almost within technological reach. Ideally, a synthetic metabolism should be able to synthesize a desired spectrum of molecules at a high rate, from multiple different nutrients, while using few chemical reactions, and producing little or no waste. Not all of these properties are achievable simultaneously. We here use a recently developed technique to create random metabolic networks with pre-specified properties to quantify trade-offs between these and other properties. We find that for every additional molecule to be synthesized a network needs on average three additional reactions. For every additional carbon source to be utilized, it needs on average two additional reactions. Networks able to synthesize 20 biomass molecules from each of 20 alternative sole carbon sources need to have at least 260 reactions. This number increases to 518 reactions for networks that can synthesize more than 60 molecules from each of 80 carbon sources. The maximally achievable rate of biosynthesis decreases by approximately 5 percent for every additional molecule to be synthesized. Biochemically related molecules can be synthesized at higher rates, because their synthesis produces less waste. Overall, the variables we study can explain 87 percent of variation in network size and 84 percent of the variation in synthesis rate. The constraints we identify prescribe broad boundary conditions that can help to guide synthetic metabolism design. PMID:22768162

Anthropogenic combustion iron as a complex climate forcer.

PubMed

Matsui, Hitoshi; Mahowald, Natalie M; Moteki, Nobuhiro; Hamilton, Douglas S; Ohata, Sho; Yoshida, Atsushi; Koike, Makoto; Scanza, Rachel A; Flanner, Mark G

2018-04-23

Atmospheric iron affects the global carbon cycle by modulating ocean biogeochemistry through the deposition of soluble iron to the ocean. Iron emitted by anthropogenic (fossil fuel) combustion is a source of soluble iron that is currently considered less important than other soluble iron sources, such as mineral dust and biomass burning. Here we show that the atmospheric burden of anthropogenic combustion iron is 8 times greater than previous estimates by incorporating recent measurements of anthropogenic magnetite into a global aerosol model. This new estimation increases the total deposition flux of soluble iron to southern oceans (30-90 °S) by 52%, with a larger contribution of anthropogenic combustion iron than dust and biomass burning sources. The direct radiative forcing of anthropogenic magnetite is estimated to be 0.021 W m -2 globally and 0.22 W m -2 over East Asia. Our results demonstrate that anthropogenic combustion iron is a larger and more complex climate forcer than previously thought, and therefore plays a key role in the Earth system.

The global carbon dioxide budget

USGS Publications Warehouse

Sundquist, E.T.

1993-01-01

The increase in atmospheric CO2 levels during the last deglaciation was comparable in magnitude to the recent historical increase. However, global CO2 budgets for these changes reflect fundamental differences in rates and in sources and sinks. The modern oceans are a rapid net CO2 sink, whereas the oceans were a gradual source during the deglaciation. Unidentified terrestrial CO2 sinks are important uncertainties in both the deglacial and recent CO2 budgets. The deglacial CO2 budget represents a complexity of long-term dynamic behavior that is not adequately addressed by current models used to forecast future atmospheric CO2 levels.

Chicken feather hydrolysate as an inexpensive complex nitrogen source for PHA production by Cupriavidus necator on waste frying oils.

PubMed

Benesova, P; Kucera, D; Marova, I; Obruca, S

2017-08-01

The chicken feather hydrolysate (FH) has been tested as a potential complex nitrogen source for the production of polyhydroxyalkanoates by Cupriavidus necator H16 when waste frying oil was used as a carbon source. The addition of FH into the mineral salt media with decreased inorganic nitrogen source concentration improved the yields of biomass and polyhydrohyalkanoates. The highest yields were achieved when 10 vol.% of FH prepared by microwave-assisted alkaline hydrolysis of 60 g l -1 feather was added. In this case, the poly(3-hydroxybutyrate) (PHB) yields were improved by more than about 50% as compared with control cultivation. A positive impact of FH was also observed for accumulation of copolymer poly(3-hydroxybutyrate-co-3-hydroxyvalerate) when sodium propionate was used as a precursor. The copolymer has superior processing and mechanical properties in comparison with PHB homopolymer. The application of FH eliminated the inhibitory effect of propionate and resulted in altered content of 3-hydroxyvalerate (3HV) in copolymer. Therefore, the hydrolysed feather can serve as an excellent complex source of nitrogen for the polyhydroxyalkanoates (PHA) production. Moreover, by the combination of two inexpensive types of waste, such as waste frying oil and feather hydrolysate, it is possible to produce PHA with substantially improved efficiency and sustainability. Millions of tons of feathers, important waste product of poultry-processing industry, are disposed off annually without any further benefits. Thus, there is an inevitable need for new technologies that enable ecologically and economically sensible processing of this waste. Herein, we report that alkali-hydrolysed feathers can be used as a complex nitrogen source considerably improving polyhydroxyalkanoates production on waste frying oil employing Cupriavidus necator. © 2017 The Society for Applied Microbiology.

Magnetic mapping of (carbonated) oceanic crust-mantle boundary: New insights from Linnajavri, northern Norway

NASA Astrophysics Data System (ADS)

Tominaga, M.; Beinlich, A.; Tivey, M.; Andrade Lima, E.; Weiss, B. P.

2012-12-01

The contribution of lower oceanic crust and upper mantle to marine magnetic anomalies has long been recognized, but the detailed magnetic character of this non-volcanic source layer remains to be fully defined. Here, we report preliminary results of a magnetic survey and source characterization of a "carbonated" oceanic Moho (petrological "Mohorovicic discontinuity") sequence observed at the Linnajavri Serpentinite Complex (LSC), northern Norway. The LSC is located at 67° 36'N and 16° 24'E within the upper Allochthon of the Norwegian Caledonides and represents a dismembered ophiolite. Particularly in the southern ("Ridoalggicohkka") area of the LSC, gabbro, serpentinite and its talc-carbonate (soapstone) and quartz-carbonate (listvenite) altered equivalents are extraordinarily well-exposed [1]. An intact oceanic Moho is exposed here, despite its complex tectonic setting. The small degree of arctic rock weathering (≤ 2 mm weathering surface) allowed for detailed regional-scale surface magnetic mapping across alteration fronts (serpentinite-soapstone; soapstone-listvenite) and lithological contacts (soapstone-gabbro). Magnetic mapping was conducted using a handheld 3-axis magnetometer, surface-towed resistivity meter and Teka surface magnetic susceptometer with sample spacing of 1 m. Geophysical field mapping was combined with petrological observations and scanning SQUID microscopy (SM) mapping conducted on thin sections from rock samples that were drilled along the survey lines. Regional scale magnetic mapping indicates that the total magnetic field across both the "carbonated" Moho and the soapstone-serpentinite interfaces show higher frequency changes in their magnetic anomaly character and amplitudes than the surface-towed resistivity data. SQUID microscopy mapping of both natural remanence magnetization (NRM) and anhysteretic remanence magnetization (ARM) on gabbro, serpentinite, soapstone, and listvenite samples, with a sensor-sample separation of ˜190 μm, show that the distribution of microscopically measurable ferromagnetic and possibly sulfide minerals produces a different bulk intensity for each of the rock types. SM vector magnetic field maps of these samples also reveal that the magnetization associated with these grains (observed as dipole-like fields in SM maps) is variable in direction from grain to grain, which may result from different alteration histories for each grain. These complex magnetization patterns acquired through thermal and chemical alteration history may explain the short wavelength magnetic anomalies observed along our traverse lines. [1] Beinlich, A., Plümper, O., Hövelmann, J., Austrheim, H. and Jamtveit, B. (2012), Terra Nova, in press.

Multiscale Metabolic Modeling: Dynamic Flux Balance Analysis on a Whole-Plant Scale1[W][OPEN

PubMed Central

Grafahrend-Belau, Eva; Junker, Astrid; Eschenröder, André; Müller, Johannes; Schreiber, Falk; Junker, Björn H.

2013-01-01

Plant metabolism is characterized by a unique complexity on the cellular, tissue, and organ levels. On a whole-plant scale, changing source and sink relations accompanying plant development add another level of complexity to metabolism. With the aim of achieving a spatiotemporal resolution of source-sink interactions in crop plant metabolism, a multiscale metabolic modeling (MMM) approach was applied that integrates static organ-specific models with a whole-plant dynamic model. Allowing for a dynamic flux balance analysis on a whole-plant scale, the MMM approach was used to decipher the metabolic behavior of source and sink organs during the generative phase of the barley (Hordeum vulgare) plant. It reveals a sink-to-source shift of the barley stem caused by the senescence-related decrease in leaf source capacity, which is not sufficient to meet the nutrient requirements of sink organs such as the growing seed. The MMM platform represents a novel approach for the in silico analysis of metabolism on a whole-plant level, allowing for a systemic, spatiotemporally resolved understanding of metabolic processes involved in carbon partitioning, thus providing a novel tool for studying yield stability and crop improvement. PMID:23926077

Airborne remote sensing and in situ measurements of atmospheric CO2 to quantify point source emissions

NASA Astrophysics Data System (ADS)

Krings, Thomas; Neininger, Bruno; Gerilowski, Konstantin; Krautwurst, Sven; Buchwitz, Michael; Burrows, John P.; Lindemann, Carsten; Ruhtz, Thomas; Schüttemeyer, Dirk; Bovensmann, Heinrich

2018-02-01

Reliable techniques to infer greenhouse gas emission rates from localised sources require accurate measurement and inversion approaches. In this study airborne remote sensing observations of CO2 by the MAMAP instrument and airborne in situ measurements are used to infer emission estimates of carbon dioxide released from a cluster of coal-fired power plants. The study area is complex due to sources being located in close proximity and overlapping associated carbon dioxide plumes. For the analysis of in situ data, a mass balance approach is described and applied, whereas for the remote sensing observations an inverse Gaussian plume model is used in addition to a mass balance technique. A comparison between methods shows that results for all methods agree within 10 % or better with uncertainties of 10 to 30 % for cases in which in situ measurements were made for the complete vertical plume extent. The computed emissions for individual power plants are in agreement with results derived from emission factors and energy production data for the time of the overflight.

Cathodoluminescent UV-radiation sources

NASA Astrophysics Data System (ADS)

Vereschagina, N. Y.; Danilkin, M. I.; Kazaryan, M. A.; Ozol, D. I.; Sheshin, E. P.; Spassky, D. A.

2018-04-01

Mercury-free UV-radiation sources are described. An electron beam similar to cathode-ray tubes (CRT) excites a luminescent material in a vacuum bulb. A high density of excitation requires the cathode and the luminescent material to be resistant for that and provide the extended lifetime of the UV-radiation source. Carbon fibre and nano-carbon based field-emission cathodes produce long lasting stable emission with a high current density (up to 0.3-0.5 A/cm2 ). Li2B4O7:Cu and Li2B4O7:Ag luminescent ceramics survive under high radiation doses and provide UV luminescence bands peaked at 360-370 nm and 270 nm, respectively. The luminescence band at 360-370 nm has a good overlap with the fundamental absorption edge of TiO2, which is known as a photo-catalyst in air and water cleaning systems. The luminescence band at 270 nm overlaps with DNA absorption and provides a direct disinfection effect. We suggest the structure of complex luminescence centres and energy transfer mechanisms. The electron structure of lithium tetraborate and the contribution of impurities are also discussed in paper.

Isolation and growth characteristics of an EDTA-degrading member of the alpha-subclass of Proteobacteria.

PubMed

Weilenmann, Hans-Ueli; Engeli, Barbara; Bucheli-Witschel, Margarete; Egli, Thomas

2004-10-01

A Gram-negative, ethylenediaminetetraacetic acid (EDTA)-degrading bacterium (deposited at the German Culture Collection as strain DSM 9103) utilising EDTA as the only source of carbon, energy and nitrogen was isolated from a mixed EDTA-degrading population that was originally enriched in a column system from a mixture of activated sludge and soil. Chemotaxonomic analysis of quinones, polar lipids and fatty acids allowed allocation of the isolate to the alpha-subclass of Proteobacteria. 16S rDNA sequencing and phylogenetic analysis revealed highest similarity to the Mesorhizobium genus followed by the Aminobacter genus. However, the EDTA-degrading strain apparently forms a new branch within the Phyllobacteriaceae/Mesorhizobia family. Growth of the strain was rather slow not only on EDTA (micro(max) = 0.05 h(-1)) but also on other substrates. Classical substrate utilisation testing in batch culture suggested a quite restricted carbon source spectrum with only lactate, glutamate, and complexing agents chemically related to EDTA (nitrilotriacetate, iminodiacetate and ethylenediaminedisuccinate) supporting growth. However, when EDTA-limited continuous cultures of strain DSM 9103 were pulsed with fumarate, succinate, glucose or acetate, these substrates were assimilated immediately. Apparently, the strain can use a broader spectrum than indicated by traditional substrate testing techniques. The EDTA species CaEDTA and MgEDTA served as growth substrates of the strain because in the mineral medium employed EDTA was predicted to be mainly present in the form of these two complexes. The bacterium was not able to degrade Fe3+-complexed EDTA.

A Bimetallic Aluminium(Salphen) Complex for the Synthesis of Cyclic Carbonates from Epoxides and Carbon Dioxide.

PubMed

Wu, Xiao; North, Michael

2017-01-10

A bimetallic aluminium(salphen) complex is reported as a sustainable, efficient and inexpensive catalyst for the synthesis of cyclic carbonates from epoxides and carbon dioxide. In the presence of this complex and tetrabutylammonium bromide, terminal and internal epoxides reacted at 50 °C and 10 bar carbon dioxide pressure to afford their corresponding cyclic carbonates in yields of 50-94 % and 30-71 % for terminal and internal cyclic carbonates, respectively. Mechanistic studies using deuterated epoxides and an analogous monometallic aluminium(salphen) chloride complex support a mechanism for catalysis by the bimetallic complex, which involves intramolecular cooperative catalysis between the two aluminium centres. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

River Export of Dissolved and Particulate Organic Carbon from Permafrost and Peat Deposits across the Siberian Arctic

NASA Astrophysics Data System (ADS)

Wild, B.; Andersson, A.; Bröder, L.; Vonk, J.; Hugelius, G.; McClelland, J. W.; Raymond, P. A.; Gustafsson, O.

2017-12-01

Permafrost and peat deposits of northern high latitudes store more than 1300 Pg of organic carbon. This carbon has been preserved for thousands of years by cold and moist conditions, but is now increasingly mobilized as temperatures rise. While part will be degraded to CO2 and CH4 and amplify global warming, part will be exported by rivers to the Arctic Ocean where it can be degraded or re-buried by sedimentation. We here use the four large Siberian rivers Ob, Yenisey, Lena, and Kolyma as natural integrators of carbon mobilization in their catchments. We apply isotope based source apportionments and Markov Chain Monte Carlo Simulations to quantify contributions of organic carbon from permafrost and peat deposits to organic carbon exported by these rivers. More specifically, we compare the 14C signatures of dissolved and particulate organic carbon (DOC, POC) sampled close to the river mouths with those of five potential carbon sources; (1) recent aquatic and (2) terrestrial primary production, (3) the active layer of permafrost soils, (4) deep Holocene deposits (including thermokarst and peat deposits) and (5) Ice Complex Deposits. 14C signatures of these endmembers were constrained based on extensive literature review. We estimate that the four rivers together exported 2.4-4.5 Tg organic carbon from permafrost and peat deposits per year. While total organic carbon export was dominated by DOC (90%), the export of organic carbon from permafrost and peat deposits was more equally distributed between DOC (56%) and POC (44%). Recent models predict that ca. 200 Pg carbon will be lost as CO2 or CH4 by 2100 (RCP8.5) from the circumarctic permafrost area, of which roughly a quarter is drained by the Ob, Yenisey, Lena, and Kolyma rivers. Our comparatively low estimates of river carbon export thus suggest limited transfer of organic carbon from permafrost and peat deposits to high latitude rivers, or its rapid degradation within rivers. Our findings highlight the importance of both DOC and POC, and its degradation, for the fate of carbon mobilized from high latitude deposits under global warming, and indicate a low potential for its stabilization in the Arctic Ocean.

Proteomic and metabolomic analysis of the carotenogenic yeast Xanthophyllomyces dendrorhous using different carbon sources.

PubMed

Martinez-Moya, Pilar; Niehaus, Karsten; Alcaíno, Jennifer; Baeza, Marcelo; Cifuentes, Víctor

2015-04-12

Astaxanthin is a potent antioxidant with increasing biotechnological interest. In Xanthophyllomyces dendrorhous, a natural source of this pigment, carotenogenesis is a complex process regulated through several mechanisms, including the carbon source. X. dendrorhous produces more astaxanthin when grown on a non-fermentable carbon source, while decreased astaxanthin production is observed in the presence of high glucose concentrations. In the present study, we used a comparative proteomic and metabolomic analysis to characterize the yeast response when cultured in minimal medium supplemented with glucose (fermentable) or succinate (non-fermentable). A total of 329 proteins were identified from the proteomic profiles, and most of these proteins were associated with carotenogenesis, lipid and carbohydrate metabolism, and redox and stress responses. The metabolite profiles revealed 92 metabolites primarily associated with glycolysis, the tricarboxylic acid cycle, amino acids, organic acids, sugars and phosphates. We determined the abundance of proteins and metabolites of the central pathways of yeast metabolism and examined the influence of these molecules on carotenogenesis. Similar to previous proteomic-stress response studies, we observed modulation of abundance from several redox, stress response, carbohydrate and lipid enzymes. Additionally, the accumulation of trehalose, absence of key ROS response enzymes, an increased abundance of the metabolites of the pentose phosphate pathway and tricarboxylic acid cycle suggested an association between the accumulation of astaxanthin and oxidative stress in the yeast. Moreover, we observed the increased abundance of late carotenogenesis enzymes during astaxanthin accumulation under succinate growth conditions. The use of succinate as a carbon source in X. dendrorhous cultures increases the availability of acetyl-CoA for the astaxanthin production compared with glucose, likely reflecting the positive regulation of metabolic enzymes of the tricarboxylic acid and glyoxylate cycles. The high metabolite level generated in this pathway could increase the cellular respiration rate, producing reactive oxygen species, which induces carotenogenesis.

Carbon and nitrogen isotopic compositions of particulate organic matter in four large river systems across the United States

USGS Publications Warehouse

Kendall, C.; Silva, S.R.; Kelly, V.J.

2001-01-01

Riverine particulate organic matter (POM) samples were collected bi-weekly to monthly from 40 sites in the Mississippi, Colorado, Rio Grande, and Columbia River Basins (USA) in 1996-97 and analysed for carbon and nitrogen stable isotopic compositions. These isotopic compositions and C : N ratios were used to identify four endmember sources of POM: Plankton, fresh terrestrial plant material, aquatic plants, and soil organic material. This large-scale study also incorporated ancillary chemical and hydrologic data to refine and extend the interpretations of POM sources beyond the source characterizations that could be done solely with isotopic and elemental ratios. The ancillary data were especially useful for differentiating between seasonal changes in POM source materials and the effects of local nutrient sources and in-stream biogeochemical processes. Average values of ??13 C and C : N for all four river systems suggested that plankton is the dominant source of POM in these rivers, with higher percentages of plankton downstream of reservoirs. Although the temporal patterns in some rivers are complex, the low ??13C and C : N values in spring and summer probably indicate plankton blooms, whereas relatively elevated values in fall and winter are consistent with greater proportions of decaying aquatic vegetation and/or terrestrial material. Seasonal shifts in the ??13C of POM when the C : N remains relatively constant probably indicate changes in the relative rates of photosynthesis and respiration. Periodic inputs of plant detritus are suggested by C : N ratios >15, principally on the Columbia and Ohio Rivers. The ??15N and ??13C also reflect the importance of internal and external sources of dissolved carbon and nitrogen, and the degree of in-stream processing. Elevated ??15N values at some sites probably reflect inputs from sewage and/or animal waste. This information on the spatial and temporal variation in sources of POM in four major river systems should prove useful in future food web and nutrient transport studies.

Release of Black Carbon From Thawing Permafrost Estimated by Sequestration Fluxes in the East Siberian Arctic Shelf Recipient

NASA Astrophysics Data System (ADS)

Salvadó, Joan A.; Bröder, Lisa; Andersson, August; Semiletov, Igor P.; Gustafsson, Örjan

2017-10-01

Black carbon (BC) plays an important role in carbon burial in marine sediments globally. Yet the sequestration of BC in the Arctic Ocean is poorly understood. Here we assess the concentrations, fluxes, and sources of soot BC (SBC)—the most refractory component of BC—in sediments from the East Siberian Arctic Shelf (ESAS), the World's largest shelf sea system. SBC concentrations in the contemporary shelf sediments range from 0.1 to 2.1 mg g-1 dw, corresponding to 2-12% of total organic carbon. The 210Pb-derived fluxes of SBC (0.42-11 g m-2 yr-1) are higher or in the same range as fluxes reported for marine surface sediments closer to anthropogenic emissions. The total burial flux of SBC in the ESAS ( 4,000 Gg yr-1) illustrates the great importance of this Arctic shelf in marine sequestration of SBC. The radiocarbon signal of the SBC shows more depleted yet also more uniform signatures (-721 to -896‰; average of -774 ± 62‰) than of the non-SBC pool (-304 to -728‰; average of -491 ± 163‰), suggesting that SBC is coming from an, on average, 5,900 ± 300 years older and more specific source than the non-SBC pool. We estimate that the atmospheric BC input to the ESAS is negligible ( 0.6% of the SBC burial flux). Statistical source apportionment modeling suggests that the ESAS sedimentary SBC is remobilized by thawing of two permafrost carbon (PF/C) systems: surface soil permafrost (topsoil/PF; 25 ± 8%) and Pleistocene ice complex deposits (ICD/PF; 75 ± 8%). The SBC contribution to the total mobilized permafrost carbon (PF/C) increases with increasing distance from the coast (from 5 to 14%), indicating that the SBC is more recalcitrant than other forms of translocated PF/C. These results elucidate for the first time the key role of permafrost thaw in the transport of SBC to the Arctic Ocean. With ongoing global warming, these findings have implications for the biogeochemical carbon cycle, increasing the size of this refractory carbon pool in the Arctic Ocean.

The geochemistry of primitive volcanic rocks of the Ankaratra volcanic complex, and source enrichment processes in the genesis of the Cenozoic magmatism in Madagascar

NASA Astrophysics Data System (ADS)

Melluso, L.; Cucciniello, C.; le Roex, A. P.; Morra, V.

2016-07-01

The Ankaratra volcanic complex in central Madagascar consists of lava flows, domes, scoria cones, tuff rings and maars of Cenozoic age that are scattered over 3800 km2. The mafic rocks include olivine-leucite-nephelinites, basanites, alkali basalts and hawaiites, and tholeiitic basalts. Primitive samples have high Mg# (>60), high Cr and Ni concentrations; their mantle-normalized patterns peak at Nb and Ba, have troughs at K, and smoothly decrease towards the least incompatible elements. The Ankaratra mafic rocks show small variation in Sr-Nd-Pb isotopic compositions (e.g., 87Sr/86Sr = 0.70377-0.70446, 143Nd/144Nd = 0.51273-0.51280, 206Pb/204Pb = 18.25-18.87). These isotopic values differ markedly from those of Cenozoic mafic lavas of northern Madagascar and the Comoro archipelago, typical Indian Ocean MORB and oceanic basalt end-members. The patterns of olivine nephelinitic magmas can be obtained through 3-10% partial melting of a mantle source that was enriched by a Ca-rich alkaline melt, and that contained garnet, carbonates and phlogopite. The patterns of tholeiitic basalts can be obtained after 10-12% partial melting of a source enriched with lower amounts of the same alkaline melt, in the spinel- (and possibly amphibole-) facies mantle, hence in volumes where carbonate is not a factor. The significant isotopic change from the northernmost volcanic rocks of Madagascar and those in the central part of the island implicates a distinct source heterogeneity, and ultimately assess the role of the continental lithospheric mantle as source region. The source of at least some volcanic rocks of the still active Comoro archipelago may have suffered the same time-integrated geochemical and isotopic evolution as that of the northern Madagascar volcanic rocks.

Aerosol carbon isotope composition over Baltic Sea

NASA Astrophysics Data System (ADS)

Garbaras, Andrius; Pabedinskas, Algirdas; Masalaite, Agne; Petelski, Tomasz; Gorokhova, Elena; Sapolaite, Justina; Ezerinskis, Zilvinas; Remeikis, Vidmantas

2017-04-01

Particulate carbonaceous matter is significant contributor to ambient particulate matter originating from intervening sources which contribution is difficult to quantify due to source diversity, chemical complexity and processes during atmospheric transport. Carbon isotope analysis can be extremely useful in source apportionment of organic matter due to the unique isotopic signatures associated with anthropocentric (fossil fuel), continental (terrestrial plants) and marine sources, and is particularly effective when these sources are mixed (Ceburnis et al., 2011;Ceburnis et al., 2016). We will present the isotope ratio measurement results of aerosol collected during the cruise in the Baltic Sea. Sampling campaign of PM10 and size segregated aerosol particles was performed on the R/V "Oceania" in October 2015. Air mass back trajectories were prevailing both from the continental and marine areas during the sampling period. The total carbon concentration varied from 1 µg/m3 to 8 µg/m3. Two end members (δ13C = -25‰ and δ13C = -28 ‰ ) were established from the total stable carbon isotope analysis in PM10 fraction. δ13C analysis in size segregated aerosol particles revealed δ13C values being highest in the 1 - 2.5 µm range (δ13C = -24.9 ‰ ) during continental transport, while lowest TC δ13C values (δ13C ≈ -27 ‰ ) were detected in the size range D50 <1 µm during stormy weather when air mass trajectory prevailed from the western direction. These measurements revealed that simplified isotope mixing model can not be applied for the aerosol source apportionment (Masalaite et al., 2015) in the perturbed marine environment. Additionally, concentration of bacteria and fungi were measured in size segregated and PM10 aerosol fraction. We were able to relate aerosol source δ13C end members with the abundance of bacteria and fungi over Baltic Sea combining air mass trajectories, stable isotope data, fungi and bacteria concentrations. Ceburnis, D., Garbaras, A., Szidat, S., Rinaldi, M., Fahrni, S., Perron, N., Wacker, L., Leinert, S., Remeikis, V., and Facchini, M.: Quantification of the carbonaceous matter origin in submicron marine aerosol by 13 C and 14 C isotope analysis, Atmospheric Chemistry and Physics, 11, 8593-8606, 2011. Ceburnis, D., Masalaite, A., Ovadnevaite, J., Garbaras, A., Remeikis, V., Maenhaut, W., Claeys, M., Sciare, J., Baisnée, D., and O'Dowd, C. D.: Stable isotopes measurements reveal dual carbon pools contributing to organic matter enrichment in marine aerosol, Scientific Reports, 6, 2016. Masalaite, A., Remeikis, V., Garbaras, A., Dudoitis, V., Ulevicius, V., and Ceburnis, D.: Elucidating carbonaceous aerosol sources by the stable carbon δ13C TC ratio in size-segregated particles, Atmospheric Research, 158, 1-12, 2015.

Stable carbon isotopic compositions of intact polar lipids reveal complex carbon flow patterns among hydrocarbon degrading microbial communities at the Chapopote asphalt volcano

NASA Astrophysics Data System (ADS)

Schubotz, Florence; Lipp, Julius S.; Elvert, Marcus; Hinrichs, Kai-Uwe

2011-08-01

Seepage of asphalt forms the basis of a cold seep system at 3000 m water depth at the Chapopote Knoll in the southern Gulf of Mexico. Anaerobic microbial communities are stimulated in the oil-impregnated sediments as evidenced by the presence of intact polar membrane lipids (IPLs) derived from archaea and Bacteria at depths up to 7 m below the seafloor. Detailed investigation of stable carbon isotope composition (δ 13C) of alkyl and acyl moieties derived from a range of IPL precursors with distinct polar head groups resolved the complexity of carbon metabolisms and utilization of diverse carbon sources by uncultured microbial communities. In surface sediments most of the polar lipid-derived fatty acids with phosphatidylethanolamine (PE), phosphatidylglycerol (PG) and diphosphatidylglycerol (DPG) head groups could be tentatively assigned to autotrophic sulfate-reducing bacteria, with a relatively small proportion involved in the anaerobic oxidation of methane. Derivatives of phosphatidyl-( N)-methylethanolamine (PME) were abundant and could be predominantly assigned to heterotrophic oil-degrading bacteria. Archaeal IPLs with phosphate-based hydroxyarchaeols and diglycosidic glyceroldibiphytanylglyceroltetraethers (GDGTs) were assigned to methanotrophic archaea of the ANME-2 and ANME-1 cluster, respectively, whereas δ 13C values of phosphate-based archaeols and mixed phosphate-based and diglycosidic GDGTs point to methanogenic archaea. At a 7 m deep sulfate-methane transition zone that is linked to the upward movement of gas-laden petroleum, a distinct increase in abundance of archaeal IPLs such as phosphate-based hydroxyarchaeols and diglycosidic archaeol and GDGTs is observed; their δ 13C values are consistent with their origin from both methanotrophic and methanogenic archaea. This study reveals previously hidden, highly complex patterns in the carbon-flow of versatile microbial communities involved in the degradation of heavy oil including hydrocarbon gases that would not have been evident from classical compound-specific isotope analyses of either bulk IPL or apolar lipid derivatives.

Metabolic analyses of the improved ε-poly-L-lysine productivity using a glucose-glycerol mixed carbon source in chemostat cultures.

PubMed

Zhang, Jian-Hua; Zeng, Xin; Chen, Xu-Sheng; Mao, Zhong-Gui

2018-04-21

The glucose-glycerol mixed carbon source remarkably reduced the batch fermentation time of ε-poly-L-lysine (ε-PL) production, leading to higher productivity of both biomass and ε-PL, which was of great significance in industrial microbial fermentation. Our previous study confirmed the positive influence of fast cell growth on the ε-PL biosynthesis, while the direct influence of mixed carbon source on ε-PL production was still unknown. In this work, chemostat culture was employed to study the capacity of ε-PL biosynthesis in different carbon sources at a same dilution rate of 0.05 h -1 . The results indicated that the mixed carbon source could enhance the ε-PL productivity besides the rapid cell growth. Analysis of key enzymes demonstrated that the activities of phosphoenolpyruvate carboxylase, citrate synthase, aspartokinase and ε-PL synthetase were all increased in chemostat culture with the mixed carbon source. In addition, the carbon fluxes were also improved in the mixed carbon source in terms of tricarboxylic acid cycle, anaplerotic and diaminopimelate pathway. Moreover, the mixed carbon source also accelerated the energy metabolism, leading to higher levels of energy charge and NADH/NAD + ratio. The overall improvements of primary metabolism in chemostat culture with glucose-glycerol combination provided sufficient carbon skeletons and ATP for ε-PL biosynthesis. Therefore, the significantly higher ε-PL productivity in the mixed carbon source was a combined effect of both superior substrate group and rapid cell growth.

A Sound Pressure-level Meter Without Amplification

NASA Technical Reports Server (NTRS)

Stowell, E Z

1937-01-01

The N.A.C.A. has developed a simple pressure-level meter for the measurement of sound-pressure levels above 70 db. The instrument employs a carbon microphone but has no amplification. The source of power is five flashlight batteries. Measurements may be made up to the threshold of feeling with an accuracy of plus or minus 2 db; band analysis of complex spectra may be made if desired.

Mechanisms of Oxygen Toxicity at the Cellular Level.

DTIC Science & Technology

1982-06-30

exposed and measured using glucose as the sole carbon source. Addition of SH containing reducing agents (cysteine, lipoic acid or dithiothreitol) before...of a Few Seconds. Biotechnology and Bioengineering 16:1645-1657 (1974). (28) Brown, O.R. Failure of Lipoic Acid to Protect Against Cellular Oxygen...respiration, and fatty acid synthesis. The interruption of fatty acid synthesis is not the result of inactivation of the fatty acid synthetase enzyme complex

Synthesis of Water Dispersible Fluorescent Carbon Nanocrystals from Syzygium cumini Fruits for the Detection of Fe3+ Ion in Water and Biological Samples and Imaging of Fusarium avenaceum Cells.

PubMed

Bhamore, Jigna R; Jha, Sanjay; Singhal, Rakesh Kumar; Kailasa, Suresh Kumar

2017-01-01

In this work, water dispersible fluorescent carbon nanocrystals (NCs) were synthesized by a simple, green and low cost hydrothermal method using Syzygium cumini (jamun) as a carbon source at 180 °C for 6 h. The average size of carbon NCs was found to be 2.1 ± 0.5 nm and shown bright blue fluorescence when excited at 365 nm under UV lamp. The carbon NCs were characterized by spectroscopic (UV-visible and fluorescence, Fourier transform infrared and dynamic light scattering) and high resolution transmission electron microscopic techniques. The quantum yield of carbon NCs was found to be ~5.9 % at 438 nm emission wavelength when excited at 360 nm. It was noticed that none of the metal ions quenched the fluorescence intensity of carbon NCs at 438 nm except for Fe 3+ , indicating the formation of Fe 3+ ion-carbon NCs complexes. The linear range was observed in the concentration range of 0.01-100 μM with the corresponding detection limits of 0.001 μM, respectively. Furthermore, the carbon NCs were used as probes for imaging of fungal (Fusarium avenaceum) cells.

Simulated Carbon Cycling in a Model Microbial Mat.

NASA Astrophysics Data System (ADS)

Decker, K. L.; Potter, C. S.

2006-12-01

We present here the novel addition of detailed organic carbon cycling to our model of a hypersaline microbial mat ecosystem. This ecosystem model, MBGC (Microbial BioGeoChemistry), simulates carbon fixation through oxygenic and anoxygenic photosynthesis, and the release of C and electrons for microbial heterotrophs via cyanobacterial exudates and also via a pool of dead cells. Previously in MBGC, the organic portion of the carbon cycle was simplified into a black-box rate of accumulation of simple and complex organic compounds based on photosynthesis and mortality rates. We will discuss the novel inclusion of fermentation as a source of carbon and electrons for use in methanogenesis and sulfate reduction, and the influence of photorespiration on labile carbon exudation rates in cyanobacteria. We will also discuss the modeling of decomposition of dead cells and the ultimate release of inorganic carbon. The detailed modeling of organic carbon cycling is important to the accurate representation of inorganic carbon flux through the mat, as well as to accurate representation of growth models of the heterotrophs under different environmental conditions. Because the model ecosystem is an analog of ancient microbial mats that had huge impacts on the atmosphere of early earth, this MBGC can be useful as a biological component to either early earth models or models of other planets that potentially harbor life.

How aromatic compounds block DNA binding of HcaR catabolite regulator

DOE PAGES

Kim, Youngchang; Joachimiak, Grazyna; Bigelow, Lance; ...

2016-04-25

Bacterial catabolism of aromatic compounds from various sources including phenylpropanoids and flavonoids that are abundant in soil plays an important role in the recycling of carbon in the ecosystem. We have determined the crystal structures of apo-HcaR from Acinetobacter sp. ADP1, a MarR/SlyA transcription factor, in complexes with hydroxycinnamates and a specific DNA operator. The protein regulates the expression of the hca catabolic operon in Acinetobacter and related bacterial strains, allowing utilization of hydroxycinnamates as sole sources of carbon. HcaR binds multiple ligands, and as a result the transcription of genes encoding several catabolic enzymes is increased. The 1.9-2.4 Åmore » resolution structures presented here explain how HcaR recognizes four ligands (ferulate, 3,4-dihydroxybenzoate, p-coumarate, and vanillin) using the same binding site. The ligand promiscuity appears to be an adaptation to match a broad specificity of hydroxycinnamate catabolic enzymes while responding to toxic thioester intermediates. Structures of apo-HcaR and in complex with a specific DNA hca operator when combined with binding studies of hydroxycinnamates show how aromatic ligands render HcaR unproductive in recognizing a specific DNA target. Furthermore, the current study contributes to a better understanding of the hca catabolic operon regulation mechanism by the transcription factor HcaR.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Youngchang; Joachimiak, Grazyna; Bigelow, Lance

Bacterial catabolism of aromatic compounds from various sources including phenylpropanoids and flavonoids that are abundant in soil plays an important role in the recycling of carbon in the ecosystem. We have determined the crystal structures of apo-HcaR from Acinetobacter sp. ADP1, a MarR/SlyA transcription factor, in complexes with hydroxycinnamates and a specific DNA operator. The protein regulates the expression of the hca catabolic operon in Acinetobacter and related bacterial strains, allowing utilization of hydroxycinnamates as sole sources of carbon. HcaR binds multiple ligands, and as a result the transcription of genes encoding several catabolic enzymes is increased. The 1.9-2.4 Åmore » resolution structures presented here explain how HcaR recognizes four ligands (ferulate, 3,4-dihydroxybenzoate, p-coumarate, and vanillin) using the same binding site. The ligand promiscuity appears to be an adaptation to match a broad specificity of hydroxycinnamate catabolic enzymes while responding to toxic thioester intermediates. Structures of apo-HcaR and in complex with a specific DNA hca operator when combined with binding studies of hydroxycinnamates show how aromatic ligands render HcaR unproductive in recognizing a specific DNA target. Furthermore, the current study contributes to a better understanding of the hca catabolic operon regulation mechanism by the transcription factor HcaR.« less

High Laccase Expression by Trametes versicolor in a Simulated Textile Effluent with Different Carbon Sources and PHs

PubMed Central

Ottoni, Cristiane; Simões, Marta F.; Fernandes, Sara; Santos, Cledir R.; Lima, Nelson

2016-01-01

Textile effluents are highly polluting and have variable and complex compositions. They can be extremely complex, with high salt concentrations and alkaline pHs. A fixed-bed bioreactor was used in the present study to simulate a textile effluent treatment, where the white-rot fungus, Trametes versicolor, efficiently decolourised the azo dye Reactive Black 5 over 28 days. This occurred under high alkaline conditions, which is unusual, but advantageous, for successful decolourisation processes. Active dye decolourisation was maintained by operation in continuous culture. Colour was eliminated during the course of operation and maximum laccase (Lcc) activity (80.2 U∙L−1) was detected after glycerol addition to the bioreactor. Lcc2 gene expression was evaluated with different carbon sources and pH values based on reverse transcriptase-PCR (polymerase chain reaction). Glycerol was shown to promote the highest lcc2 expression at pH 5.5, followed by sucrose and then glucose. The highest levels of expression occurred between three and four days, which corroborate the maximum Lcc activity observed for sucrose and glycerol on the bioreactor. These results give new insights into the use of T. versicolor in textile dye wastewater treatment with high pHs. PMID:27490563

Determination of microbial carbon sources and cycling during remediation of petroleum hydrocarbon impacted soil using natural abundance (14)C analysis of PLFA.

PubMed

Cowie, Benjamin R; Greenberg, Bruce M; Slater, Gregory F

2010-04-01

In a petroleum impacted land-farm soil in Sarnia, Ontario, compound-specific natural abundance radiocarbon analysis identified biodegradation by the soil microbial community as a major pathway for hydrocarbon removal in a novel remediation system. During remediation of contaminated soils by a plant growth promoting rhizobacteria enhanced phytoremediation system (PEPS), the measured Delta(14)C of phospholipid fatty acid (PLFA) biomarkers ranged from -793 per thousand to -897 per thousand, directly demonstrating microbial uptake and utilization of petroleum hydrocarbons (Delta(14)C(PHC) = -1000 per thousand). Isotopic mass balance indicated that more than 80% of microbial PLFA carbon was derived from petroleum hydrocarbons (PHC) and a maximum of 20% was obtained from metabolism of more modern carbon sources. These PLFA from the contaminated soils were the most (14)C-depleted biomarkers ever measured for an in situ environmental system, and this study demonstrated that the microbial community in this soil was subsisting primarily on petroleum hydrocarbons. In contrast, the microbial community in a nearby uncontaminated control soil maintained a more modern Delta(14)C signature than total organic carbon (Delta(14)C(PLFA) = +36 per thousand to -147 per thousand, Delta(14)C(TOC) = -148 per thousand), indicating preferential consumption of the most modern plant-derived fraction of soil organic carbon. Measurements of delta(13)C and Delta(14)C of soil CO(2) additionally demonstrated that mineralization of PHC contributed to soil CO(2) at the contaminated site. The CO(2) in the uncontaminated control soil exhibited substantially more modern Delta(14)C values, and lower soil CO(2) concentrations than the contaminated soils, suggesting increased rates of soil respiration in the contaminated soils. In combination, these results demonstrated that biodegradation in the soil microbial community was a primary pathway of petroleum hydrocarbon removal in the PEPS system. This study highlights the power of natural abundance radiocarbon for determining microbial carbon sources and identifying biodegradation pathways in complex remediation systems.

Earthworms and priming of soil organic matter - The impact of food sources, food preferences and fauna - microbiota interactions

NASA Astrophysics Data System (ADS)

Potthoff, Martin; Wichern, Florian; Dyckmans, Jens; Joergensen, Rainer Georg

2016-04-01

Earthworms deeply interact with the processes of soil organic matter turnover in soil. Stabilization of carbon by soil aggregation and in the humus fraction of SOM are well known processes related to earthworm activity and burrowing. However, recent research on priming effects showed inconsistent effects for the impact of earthworm activity. Endogeic earthworms can induce apparent as well as true positive priming effects. The main finding is almost always that earthworm increase the CO2 production from soil. The sources of this carbon release can vary and seem to depend on a complex interaction of quantity and quality of available carbon sources including added substrates like straw or other compounds, food preferences and feeding behavior of earthworms, and soil properties. Referring to recent studies on earthworm effects on soil carbon storage and release (mainly Eck et al. 2015 Priming effects of Aporrectodea caliginosa on young rhizodeposits and old soil organic matter following wheat straw addition, European Journal of Soil Biology 70:38-45; Zareitalabad et al. 2010 Decomposition of 15N-labelled maize leaves in soil affected by endogeic geophagous Aporrectodea caliginosa, Soil Biology and Biochemistry 42(2):276-282; and Potthoff et al. 2001 Short-term effects of earthworm activity and straw amendment on the microbial C and N turnover in a remoistened arable soil after summer drought, Soil Biology and Biochemistry 33(4):583-591) we summaries the knowledge on earthworms and priming and come up with a conceptual approach and further research needs.

Carbon catabolite repression and cell dispersal affect degradation of the xenobiotic compound 3,4-dichloroaniline in Comamonas testosteroni WDL7 biofilms.

PubMed

Horemans, Benjamin; Breugelmans, Philip; Hofkens, Johan; Springael, Dirk

2017-03-01

Organic pollutant degrading biofilms in natural ecosystems and water treatment systems are often exposed to other carbon sources in addition to the pollutant. The availability of auxiliary carbon sources can lead to surplus biomass growth, changes in biofilm structure and carbon catabolite repression (CCR) which together will affect pollutant degradation rate and efficiency of the system. To understand the interplay between these processes, continuous biofilms of the 3,4-dichloroaniline (3,4-DCA) degrading Comamonas testosteroni WDL7-RFP were grown in single- and dual-substrate conditions with 3,4-DCA and/or citrate and reciprocal effects on 3,4-DCA/citrate degradation, biofilm biomass and biofilm structure were examined. The main mechanism affecting 3,4-DCA degradation in biofilms in dual-substrate conditions was citrate-mediated CCR as reflected by a decrease in specific 3,4-DCA degrading activity. Growth on citrate partially compensated for the lowered specific 3,4-DCA degradation activity under dual substrate conditions but not to the extent expected from growth observed under single-substrate conditions with citrate. This was explained by higher residual 3,4-DCA concentrations in the presence of citrate that increased cell dispersal in the biofilms. Our results show hampered pollutant removal in biofilms due to a complex interplay of auxiliary organic C source utilization for growth affecting the specific pollutant degradation rate and changes in cell physiology due to increased exposure to the pollutant as a result of lowered pollutant degradation rates. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Influence of carbon source on nutrient removal performance and physical-chemical characteristics of aerobic granular sludge.

PubMed

Lashkarizadeh, Monireh; Yuan, Qiuyan; Oleszkiewicz, Jan A

2015-01-01

The impact of carbon source variation on the physical and chemical characteristics of aerobic granular sludge and its biological nutrient (nitrogen and phosphorus) removal performance was investigated. Two identical sequencing batch reactors, R1 and R2, were set up. Granular biomass was cultivated to maturity using acetate-based synthetic wastewater. After mature granules in both reactors with simultaneous chemical oxygen demand (COD), ammonium and phosphorus removal capability were achieved, the feed of R2 was changed to municipal wastewater and R1 was continued on synthetic feed as control. Biological phosphorus removal was completely inhibited in R2 due to lack of readily biodegradable COD; however, the biomass maintained high ammonium and COD removal efficiencies. The disintegration of the granules in R2 occurred during the first two weeks after the change of feed, but it did not have significant impacts on settling properties of the sludge. Re-granulation of the biomass in R2 was then observed within 30 d after granules' disintegration when the biomass acclimated to the new substrate. The granular biomass in R1 and R2 maintained a Sludge Volume Index close to 60 and 47 mL g(-1), respectively, during the experimental period. It was concluded that changing the carbon source from readily biodegradable acetate to the more complex ones present in municipal wastewater did not have significant impacts on aerobic granular sludge characteristics; it particularly did not affect its settling properties. However, sufficient readily biodegradable carbon would have to be provided to maintain simultaneous biological nitrate and phosphorus removal.

Hydride-Meisenheimer Complex Formation and Protonation as Key Reactions of 2,4,6-Trinitrophenol Biodegradation by Rhodococcus erythropolis

PubMed Central

Rieger, Paul-Gerhard; Sinnwell, Volker; Preuß, Andrea; Francke, Wittko; Knackmuss, Hans-Joachim

1999-01-01

Biodegradation of 2,4,6-trinitrophenol (picric acid) by Rhodococcus erythropolis HLPM-1 proceeds via initial hydrogenation of the aromatic ring system. Here we present evidence for the formation of a hydride-Meisenheimer complex (anionic ς-complex) of picric acid and its protonated form under physiological conditions. These complexes are key intermediates of denitration and productive microbial degradation of picric acid. For comparative spectroscopic identification of the hydride complex, it was necessary to synthesize this complex for the first time. Spectroscopic data revealed the initial addition of a hydride ion at position 3 of picric acid. This hydride complex readily picks up a proton at position 2, thus forming a reactive species for the elimination of nitrite. Cell extracts of R. erythropolis HLPM-1 transform the chemically synthesized hydride complex into 2,4-dinitrophenol. Picric acid is used as the sole carbon, nitrogen, and energy source by R. erythropolis HLPM-1. PMID:9973345

A Defined, Glucose-Limited Mineral Medium for the Cultivation of Listeria spp.

PubMed Central

Schneebeli, Rudolf

2013-01-01

Members of the genus Listeria are fastidious bacteria with respect to their nutritional requirements, and several minimal media described in the literature fail to support growth of all Listeria spp. Furthermore, strict limitation by a single nutrient, e.g., the carbon source, has not been demonstrated for any of the published minimal media. This is an important prerequisite for defined studies of growth and physiology, including “omics.” Based on a theoretical analysis of previously published mineral media for Listeria, an improved, well-balanced growth medium was designed. It supports the growth, not only of all tested Listeria monocytogenes strains, but of all other Listeria species, with the exception of L. ivanovii. The growth performance of L. monocytogenes strain Scott A was tested in the newly designed medium; glucose served as the only carbon and energy source for growth, whereas neither the supplied amino acids nor the buffering and complexing components (MOPS [morpholinepropanesulfonic acid] and EDTA) supported growth. Omission of amino acids, trace elements, or vitamins, alone or in combination, resulted in considerably reduced biomass yields. Furthermore, we monitored the specific growth rates of various Listeria strains cultivated in the designed mineral medium and compared them to growth in complex medium (brain heart infusion broth [BHI]). The novel mineral medium was optimized for the commonly used strain L. monocytogenes Scott A to achieve optimum cell yields and maximum specific growth rates. This mineral medium is the first published synthetic medium for Listeria that has been shown to be strictly carbon (glucose) limited. PMID:23377938

Compound Specific and Enantioselective Stable Isotope Analysis as Tools To Monitor Transformation of Hexachlorocyclohexane (HCH) in a Complex Aquifer System.

PubMed

Liu, Yaqing; Bashir, Safdar; Stollberg, Reiner; Trabitzsch, Ralf; Weiß, Holger; Paschke, Heidrun; Nijenhuis, Ivonne; Richnow, Hans-Hermann

2017-08-15

Technical hexachlorocyclohexane (HCH) mixtures and Lindane (γ-HCH) have been produced in Bitterfeld-Wolfen, Germany, for about 30 years until 1982. In the vicinity of the former dump sites and production facilities, large plumes of HCHs persist within two aquifer systems. We studied the natural attenuation of HCH in these groundwater systems through a combination of enantiomeric and carbon isotope fractionation to characterize the degradation of α-HCH in the areas downstream of a former disposal and production site in Bitterfeld-Wolfen. The concentration and isotope composition of α-HCH from the Quaternary and Tertiary aquifers were analyzed. The carbon isotope compositions were compared to the source signal of waste deposits for the dumpsite and highly contaminated areas. The average value of δ 13 C at dumpsite was -29.7 ± 0.3 ‰ and -29.0 ± 0.1 ‰ for (-) and (+)α-HCH, respectively, while those for the β-, γ-, δ-HCH isomers were -29.0 ± 0.3 ‰, -29.5 ± 0.4 ‰, and -28.2 ± 0.2 ‰, respectively. In the plume, the enantiomer fraction shifted up to 0.35, from 0.50 at source area to 0.15 (well T1), and was found accompanied by a carbon isotope enrichment of 5 ‰ and 2.9 ‰ for (-) and (+)α-HCH, respectively. The established model for interpreting isotope and enantiomer fractionation patterns showed potential for analyzing the degradation process at a field site with a complex history with respect to contamination and fluctuating geochemical conditions.

Source attribution of black carbon in Arctic snow.

PubMed

Hegg, Dean A; Warren, Stephen G; Grenfell, Thomas C; Doherty, Sarah J; Larson, Timothy V; Clarke, Antony D

2009-06-01

Snow samples obtained at 36 sites in Alaska, Canada, Greenland, Russia, and the Arctic Ocean in early 2007 were analyzed for light-absorbing aerosol concentration together with a suite of associated chemical species. The light absorption data, interpreted as black carbon concentrations, and other chemical data were input into the EPA PMF 1.1 receptor model to explore the sources for black carbon in the snow. The analysis found four factors or sources: two distinct biomass burning sources, a pollution source, and a marine source. The first three of these were responsible for essentially all of the black carbon, with the two biomass sources (encompassing both open and closed combustion) together accounting for >90% of the black carbon.

pyhector: A Python interface for the simple climate model Hector

DOE Office of Scientific and Technical Information (OSTI.GOV)

N Willner, Sven; Hartin, Corinne; Gieseke, Robert

2017-04-01

Pyhector is a Python interface for the simple climate model Hector (Hartin et al. 2015) developed in C++. Simple climate models like Hector can, for instance, be used in the analysis of scenarios within integrated assessment models like GCAM1, in the emulation of complex climate models, and in uncertainty analyses. Hector is an open-source, object oriented, simple global climate carbon cycle model. Its carbon cycle consists of a one pool atmosphere, three terrestrial pools which can be broken down into finer biomes or regions, and four carbon pools in the ocean component. The terrestrial carbon cycle includes primary production andmore » respiration fluxes. The ocean carbon cycle circulates carbon via a simplified thermohaline circulation, calculating air-sea fluxes as well as the marine carbonate system (Hartin et al. 2016). The model input is time series of greenhouse gas emissions; as example scenarios for these the Pyhector package contains the Representative Concentration Pathways (RCPs)2. These were developed to cover the range of baseline and mitigation emissions scenarios and are widely used in climate change research and model intercomparison projects. Using DataFrames from the Python library Pandas (McKinney 2010) as a data structure for the scenarios simplifies generating and adapting scenarios. Other parameters of the Hector model can easily be modified when running the model. Pyhector can be installed using pip from the Python Package Index.3 Source code and issue tracker are available in Pyhector's GitHub repository4. Documentation is provided through Readthedocs5. Usage examples are also contained in the repository as a Jupyter Notebook (Pérez and Granger 2007; Kluyver et al. 2016). Courtesy of the Mybinder project6, the example Notebook can also be executed and modified without installing Pyhector locally.« less

Characterisation of Black Carbon (BC) mixing state and flux in Beijing using single particle measurements.

NASA Astrophysics Data System (ADS)

Joshi, Rutambhara; Liu, Dantong; Allan, James; Coe, Hugh; Flynn, Michael; Broda, Kurtis; Olfert, Jason; Irwin, Martin; Sun, Yele; Fu, Pingqing; Wang, Junfeng; Ge, Xinlei; Langford, Ben; Nemitz, Eiko; Mullinger, Neil

2017-04-01

BC is generated by the incomplete combustion of carbonaceous fuels and it is an important component of fine PM2.5. In the atmosphere BC particles have a complex structure and its mixing state has crucial impact on optical properties. Quantifying the sources and emissions of black carbon in urban environments is important and presently uncertain, particularly in megacities undergoing rapid growth and change in emissions. During the winter of 2016 (10th Nov-10th Dec) the BC was characterised as part of a large joint UK-China field experiment in Beijing. This paper focuses on understanding the mixing state of BC as well as identification and quantification of BC sources. We used a combination of a Centrifugal Particle Mass Analyser (CPMA) and a Single Particle Soot Photometer (SP2) to uniquely quantify the morphology independent mass of single refractory BC particles and their coating content. The CPMA allows us to select pre-charged aerosol particles according to their mass to charge ratio and the SP2 provides information on the mass of refractory BC through a laser-induced incandescence method. Furthermore, another SP2 was used to measure the BC flux at 100m height using the Eddy Covariance method. We have successfully gathered 4 weeks of continuous measurements which include several severe pollution events in Beijing. Here we present preliminary results, characterising the distribution of coating mass on BC particles in Beijing and linking this to the main sources of BC in the city. We will provide initial estimates of the BC flux over a several kilometre footprint. Such analysis will provide important information for the further investigation of source distribution, emission, lifetime and optical properties of BC under complex environments in Beijing.

Plant cell wall sugars: sweeteners for a bio-based economy.

PubMed

Van de Wouwer, Dorien; Boerjan, Wout; Vanholme, Bartel

2018-02-12

Global warming and the consequent climate change is one of the major environmental challenges we are facing today. The driving force behind the rise in temperature is our fossil-based economy, which releases massive amounts of the greenhouse gas carbon dioxide into the atmosphere. In order to reduce greenhouse gas emission, we need to scale down our dependency on fossil resources, implying that we need other sources for energy and chemicals to feed our economy. Here, plants have an important role to play; by means of photosynthesis, plants capture solar energy to split water and fix carbon derived from atmospheric carbon dioxide. A significant fraction of the fixed carbon ends up as polysaccharides in the plant cell wall. Fermentable sugars derived from cell wall polysaccharides form an ideal carbon source for the production of bio-platform molecules. However, a major limiting factor in the use of plant biomass as feedstock for the bio-based economy is the complexity of the plant cell wall and its recalcitrance towards deconstruction. To facilitate the release of fermentable sugars during downstream biomass processing, the composition and structure of the cell wall can be engineered. Different strategies to reduce cell wall recalcitrance will be described in this review. The ultimate goal is to obtain a tailor-made biomass, derived from plants with a cell wall optimized for particular industrial or agricultural applications, without affecting plant growth and development. This article is protected by copyright. All rights reserved.

An integrated monitoring network for hydrologic, geochemical, and sediment fluxes to characterize carbon-mineral fate in the Christina River Basin Critical Zone Observatory

NASA Astrophysics Data System (ADS)

Sawyer, A. H.; Karwan, D. L.; Lazareva, O.

2011-12-01

Organic carbon (C) -mineral complexation mechanism plays an important role in C sequestration within watersheds. The primary goal of the Christina River Basin Critical Zone Observatory in SE Pennsylvania and N Delaware, USA (one of six National Science Foundation-funded observatories) is to quantify net carbon sink or source due to mineral production and transport and its dependence on land use. This effort requires an interdisciplinary understanding of carbon and mineral fluxes across interfaces between soil, aquifer, floodplain, and river. We have established a monitoring network that targets hydrologic, geochemical, and sedimentological transport processes across channel-floodplain-aquifer interfaces within White Clay Creek Watershed. Within the channel, suspended material is sampled and analyzed for organic and mineral composition as well as geochemical fingerprints. Surface water and groundwater are analyzed for C, Fe, and Mn chemistry. Within the floodplain, in-situ sensors monitor soil moisture, pressure, temperature, conductivity, and redox potential. Integrated data analysis should yield estimates of water and solute fluxes between the vadose zone, riparian aquifer, and stream. Our preliminary data show that storm events are important for carbon and mineral fluxes-suspended material in surface water changes in source and composition throughout the storm. Meanwhile, the variation in stream stage drives surface water-groundwater exchange, facilitating changes in redox potential and providing opportunity for enhanced transport and reactions involving C, Fe, and Mn in the riparian aquifer.

Repression of Pseudomonas putida phenanthrene-degrading activity by plant root extracts and exudates.

PubMed

Rentz, Jeremy A; Alvarez, Pedro J J; Schnoor, Jerald L

2004-06-01

The phenanthrene-degrading activity (PDA) of Pseudomonas putida ATCC 17484 was repressed after incubation with plant root extracts of oat (Avena sativa), osage orange (Maclura pomifera), hybrid willow (Salix alba x matsudana), kou (Cordia subcordata) and milo (Thespesia populnea) and plant root exudates of oat (Avena sativa) and hybrid poplar (Populus deltoides x nigra DN34). Total organic carbon content of root extracts ranged from 103 to 395 mg l(-1). Characterization of root extracts identified acetate (not detectable to 8.0 mg l(-1)), amino acids (1.7-17.3 mg l(-1)) and glucose (1.6-14.0 mg l(-1)), indicating a complex mixture of substrates. Repression was also observed after exposure to potential root-derived substrates, including organic acids, glucose (carbohydrate) and glutamate (amino acid). Carbon source regulation (e.g. catabolite repression) was apparently responsible for the observed repression of P. putida PDA by root extracts. However, we showed that P. putida grows on root extracts and exudates as sole carbon and energy sources. Enhanced growth on root products may compensate for partial repression, because larger microbial populations are conducive to faster degradation rates. This would explain the commonly reported increase in phenanthrene removal in the rhizosphere.

Sewage contamination in the upper Mississippi River as measured by the fecal sterol, coprostanol

USGS Publications Warehouse

Writer, J.H.; Leenheer, J.A.; Barber, L.B.; Amy, G.L.; Chapra, S.C.

1995-01-01

The molecular sewage indicator, coprostanol, was measured in bed sediments of the Mississippi River for the purpose of determining sewage contamination. Coprostanol is a non-ionic, non-polar, organic molecule that associates with sediments in surface waters, and concentrations of coprostanol in bed sediments provide an indication of long-term sewage loads. Because coprostanol concentrations are dependent on particle size and percent organic carbon, a ratio between coprostanol (sewage sources) and cholestanol + cholesterol (sewage and non-sewage sources) was used to remove the biases related to particle size and percent organic carbon. The dynamics of contaminant transport in the Upper Mississippi River are influenced by both hydrologic and geochemical parameters. A mass balance model incorporating environmental parameters such as river and tributary discharge, suspended sediment concentration, fraction of organic carbon, sedimentation rates, municipal discharges and coprostanol decay rates was developed that describes coprostanol concentrations and therefore, expected patterns of municipal sewage effects on the Upper Mississippi River. Comparison of the computed and the measured coprostanol concentrations provides insight into the complex hydrologic and geochemical processes of contaminant transport and the ability to link measured chemical concentrations with hydrologic characteristics of the Mississippi River.

Distribution, Source and Fate of Dissolved Organic Matter in Shelf Seas

NASA Astrophysics Data System (ADS)

Carr, N.; Mahaffey, C.; Hopkins, J.; Sharples, J.; Williams, R. G.; Davis, C. E.

2016-02-01

Dissolved organic matter (DOM) is a complex array of molecules containing carbon (DOC), nitrogen (DON) and phosphorous (DOP), and represents the largest pool of organic matter in the marine environment. DOM in the sea originates from a variety of sources, including allochthonous inputs of terrestrial DOM from land via rivers, and autochthonous inputs through in-situ biotic processes that include phytoplankton exudation, grazing and cell lysis. Marine DOM is a substrate for bacterial growth and can act as a source of nutrients for autotrophs. However, a large component of DOM is biologically refractory. This pool is carbon-rich and nutrient-poor, and can transport and store its compositional elements over large areas and on long time scales. The role of DOM in the shelf seas is currently unclear, despite these regions acting as conduits between the land and open ocean, and also being highly productive ecosystems. Using samples collected across the Northwest European Shelf Sea, we studied the distribution, source, seasonality and potential fate of DOM using a combination of analytical tools, including analysis of amino acids, DOM absorbance spectra and excitation emission matrices, in conjunction with parallel factor analysis (PARAFAC). Strong cross shelf and seasonal gradients in DOM source and lability were found. We observed a strong seasonally dependent significant correlation between salinity and terrestrial DOM in the bottom mixed layer, an enrichment of DOM at the shelf edge in winter and a three-fold increase in fresh marine DOM coinciding with the timing of a spring bloom. Together, our findings illustrate the dynamic nature of DOM in shelf seas over a seasonal cycle and, highlight the potential for DOM to play a key role in the carbon cycle in these regions.

Biological denitrification in drinking water treatment using the seaweed Gracilaria verrucosa as carbon source and biofilm carrier.

PubMed

Ovez, B; Mergaert, J; Saglam, M

2006-04-01

Chemical and microbiological aspects were investigated with regard to biological denitrification of drinking water using the seaweed Gracilaria verrucosa as the carbon and energy substrate and as physical support for the microbial flora in semibatch, fixed-bed reactors. Complete removal of nitrate (100 mg/L) was readily achieved without accumulation of nitrite. Microbiological analysis indicated that the effluent of the reactor contained high numbers of bacteria (>10(6)/mL total count). Among the 44 bacterial strains isolated directly from the samples or isolated after enrichment at 37 degrees C, 25 different fatty acid profiles were found, indicating a complex microflora, including potential pathogens.

Anaerobic biodegradation of cyanide under methanogenic conditions.

PubMed Central

Fallon, R D; Cooper, D A; Speece, R; Henson, M

1991-01-01

Upflow, anaerobic, fixed-bed, activated charcoal biotreatment columns capable of operating at free cyanide concentrations of greater than 100 mg liter-1 with a hydraulic retention time of less than 48 h were developed. Methanogenesis was maintained under a variety of feed medium conditions which included ethanol, phenol, or methanol as the primary reduced carbon source. Under optimal conditions, greater than 70% of the inflow free cyanide was removed in the first 30% of the column height. Strongly complexed cyanides were resistant to removal. Ammonia was the nitrogen end product of cyanide transformation. In cell material removed from the charcoal columns, [14C]bicarbonate was the major carbon end product of [14C]cyanide transformation. PMID:1872600

Starch and starch hydrolysates are favorable carbon sources for bifidobacteria in the human gut.

PubMed

Liu, Songling; Ren, Fazheng; Zhao, Liang; Jiang, Lu; Hao, Yanling; Jin, Junhua; Zhang, Ming; Guo, Huiyuan; Lei, Xingen; Sun, Erna; Liu, Hongna

2015-03-01

Bifidobacteria are key commensals in human gut, and their abundance is associated with the health of their hosts. Although they are dominant in infant gut, their number becomes lower in adult gut. The changes of the diet are considered to be main reason for this difference. Large amounts of whole-genomic sequence data of bifidobacteria make it possible to elucidate the genetic interpretation of their adaptation to the nutrient environment. Among the nutrients in human gut, starch is a highly fermentable substrate and can exert beneficial effects by increasing bifidobacteria and/or being fermented to short chain fatty acids. In order to determine the potential substrate preference of bifidobacteria, we compared the glycoside hydrolase (GH) profiles of a pooled-bifidobacterial genome (PBG) with a representative microbiome (RM) of the human gut. In bifidobacterial genomes, only 15% of GHs contained signal peptides, suggesting their weakness in utilization of complex carbohydrate, such as plant cell wall polysaccharides. However, compared with other intestinal bacteria, bifidobacteiral genomes encoded more GH genes for degrading starch and starch hydrolysates, indicating that they have genetic advantages in utilizing these substrates. Bifidobacterium longum subsp. longum BBMN68 isolated from centenarian's faeces was used as a model strain to further investigate the carbohydrate utilization. The pathway for degrading starch and starch hydrolysates was the only complete pathway for complex carbohydrates in human gut. It is noteworthy that all of the GH genes for degrading starch and starch hydrolysates in the BBMN68 genome were conserved in all studied bifidobacterial strains. The in silico analyses of BBMN68 were further confirmed by growth experiments, proteomic and real-time quantitative PCR (RT-PCR) analyses. Our results demonstrated that starch and starch hydrolysates were the most universal and favorable carbon sources for bifidobacteria. The low amount of these carbon sources in adult intestine was speculated to contribute to the low relative abundance of bifidobacteria.

Differences in carbon source utilization of Salmonella Oranienburg and Saintpaul isolated from river water.

PubMed

Medrano-Félix, Andrés; Estrada-Acosta, Mitzi; Peraza-Garay, Felipe; Castro-Del Campo, Nohelia; Martínez-Urtaza, Jaime; Chaidez, Cristóbal

2017-08-01

Long-term exposure to river water by non-indigenous micro-organisms such as Salmonella may affect metabolic adaptation to carbon sources. This study was conducted to determine differences in carbon source utilization of Salmonella Oranienburg and Salmonella Saintpaul (isolated from tropical river water) as well as the control strain Salmonella Typhimurium exposed to laboratory, river water, and host cells (Hep-2 cell line) growth conditions. Results showed that Salmonella Oranienburg and Salmonella Saintpaul showed better ability for carbon source utilization under the three growth conditions evaluated; however, S. Oranienburg showed the fastest and highest utilization on different carbon sources, including D-Glucosaminic acid, N-acetyl-D-Glucosamine, Glucose-1-phosphate, and D-Galactonic acid, while Salmonella Saintpaul and S. Typhimurium showed a limited utilization of carbon sources. In conclusion, this study suggests that environmental Salmonella strains show better survival and preconditioning abilities to external environments than the control strain based on their plasticity on diverse carbon sources use.

Microbial ecology of extreme environments: Antarctic dry valley yeasts and growth in substrate limited habitats

NASA Technical Reports Server (NTRS)

Vishniac, H. S.

1981-01-01

The multiple stresses temperature, moisture, and for chemoheterotrophs, sources of carbon and energy of the Dry Valley Antarctica soils allow at best depauperate communities, low in species diversity and population density. The nature of community structure, the operation of biogeochemical cycles, the evolution and mechanisms of adaptation to this habitat are of interest in informing speculations upon life on other planets as well as in modeling the limits of gene life. Yeasts of the Cryptococcus vishniacil complex (Basidiobiastomycetes) are investigated, as the only known indigenes of the most hostile, lichen free, parts of the Dry Valleys. Methods were developed for isolating these yeasts (methods which do not exclude the recovery of other microbiota). The definition of the complex was refined and the importance of nitrogen sources was established as well as substrate competition in fitness to the Dry Valley habitats.

Scedo-Select III: a new semi-selective culture medium for detection of the Scedosporium apiospermum species complex.

PubMed

Pham, Trâm; Giraud, Sandrine; Schuliar, Gaëlle; Rougeron, Amandine; Bouchara, Jean-Philippe

2015-06-01

The Scedosporium apiospermum complex is responsible for a large variety of infections in human. Members of this complex have become emerging fungal pathogens with an increasing occurrence in patients with underlying conditions such as immunosuppression or cystic fibrosis. A better knowledge of these fungi and of the sources of contamination of the patients is required and more accurate detection methods from the environment are needed. In this context, a highly selective culture medium was developed in the present study. Thus, various aliphatic, cyclic, or aromatic compounds were tested as the sole carbon source, in combination with some inorganic nitrogen sources and fungicides. The best results were obtained with 4-hydroxy-benzoate combined with ammonium sulfate and the fungicides dichloran and benomyl. This new culture medium called Scedo-Select III was shown to support growth of all species of the S. apiospermum complex. Subsequently, this new culture medium was evaluated successfully on water and soil samples, exhibiting higher sensitivity and selectivity than the previously described SceSel+ culture medium. Therefore, this easy-to-prepare and synthetic semi-selective culture medium may be useful to clarify the ecology of these fungi and to identify their reservoirs in patients' environment. © The Author 2015. Published by Oxford University Press on behalf of The International Society for Human and Animal Mycology. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Carbonate Channel-Levee Systems Influenced by Mass-Transport Deposition, Browse Basin, Australia

NASA Astrophysics Data System (ADS)

Dunlap, D.; Janson, X.; Sanchez-Phelps, C.; Covault, J. A.

2017-12-01

Submarine channels are primary conduits for clastic sediment transport to deep-water basins, thereby controlling the location of marine depocenters and sediment bypass. The evolution and depositional character of submarine channels have broad implications to sediment dispersal, sediment quality, and hydrocarbon exploration potential. Siliciclastic channel systems have been extensively studied in modern environments, seismic and outcrop; however, carbonate channel-levee deposits have only recently been explored. Here we utilize newly released high-resolution (90 Hz) seismic-reflection data from the Australian Browse Basin to document the influence of mass-transport complex (MTC) deposition on the stratigraphic architecture of carbonate channel-levee systems. The 2014 vintage seismic survey is 2500 km2 and hosts numerous large Miocene-age carbonate channel-levee complexes basinward of the shelf edge. Regional horizons and individual channel forms were mapped. Channels range from 200-300 m wide and are bounded by high-relief levee-overbank wedges (>100 ms TWTT). These channels extend across the survey area >70 km. The leveed-channels were sourced from middle and late Miocene slope gullies linked to platform carbonates. Slope-attached and locally derived MTC's are evident throughout the Miocene section likely related to periods of basin inversion and shelf-edge gully incision. We interpret that regionally extensive (>1000 km2) slope-attached MTC's can shut down a channel-levee system and trigger the initiation of a new system, whereas more locally derived (<100 km2) MTC's can promote changes in channel map-view pattern, including avulsion in some cases. The stratigraphic architectures of the carbonate channel-levee systems and their interactions with MTC's are similar to siliciclastic analogs. The similarity in stratigraphic patterns between siliciclastic and carbonate depositional systems suggests similar formative processes related to submarine mass wasting and turbidity currents, which informs depositional models of carbonate slope systems and calls for re-evaluation of the controls on stratigraphic patterns in mixed siliciclastic-carbonate deep-water basins.

Isotope Geochemistry of Possible Terrestrial Analogue for Martian Meteorite ALH84001

NASA Technical Reports Server (NTRS)

Mojzsis, Stephen J.

2000-01-01

We have studied the microdomain oxygen and carbon isotopic compositions by SIMS of complex carbonate rosettes from spinel therzolite xenoliths, hosted by nepheline basanite, from the island of Spitsbergen (Norway). The Quaternary volcanic rocks containing the xenoliths erupted into a high Arctic environment and through relatively thick continental crust containing carbonate rocks. We have attempted to constrain the sources of the carbonates in these rocks by combined O-18/O-16 and C-13/C-12 ratio measurements in 25 micron diameter spots of the carbonate and compare them to previous work based primarily on trace-element distributions. The origin of these carbonates can be interpreted in terms of either contamination by carbonate country rock during ascent of the xenoliths in the host basalt, or more probably by hydrothermal processes after emplacement. The isotopic composition of these carbonates from a combined delta.18O(sub SMOW) and delta.13C(sub PDB) standpoint precludes a primary origin of these minerals from the mantle. Here a description is given of the analysis procedure, standardization of the carbonates, major element compositions of the carbonates measured by electron microprobe, and their correlated C and O isotope compositions as measured by ion microprobe. Since these carbonate rosettes may represent a terrestrial analogue to the carbonate "globules" found in the martian meteorite ALH84001 interpretations for the origin of the features found in the Spitsbergen may be of interest in constraining the origin of these carbonate minerals on Mars.

Near-Road Exposure and Impact of Air Pollution on Allergic Diseases in Elementary School Children: A Cross-Sectional Study

PubMed Central

Kim, Ho Hyun; Lee, Chung Soo; Yu, Seung Do; Lee, Jung Sub; Chang, Jun Young; Jeon, Jun Min; Son, Hye Rim; Park, Chan Jung; Shin, Dong Chun

2016-01-01

Purpose The study aims to classify schools based on traffic pollutants and their complex sources, to assess the environment, to determine the state of allergic diseases among students using the International Study of Asthma and Allergies in children (ISAAC) questionnaire, and to assess their connection to air pollutants. Materials and Methods A total of seven schools were divided into three categories according to the characteristics of their surrounding environments: three schools in traffic-related zones, two schools in complex source zones I (urban), and two schools in complex source zones II (industrial complex). ISAAC questionnaires were administered and the 4404 completed questionnaires were analyzed. Results The frequency of asthma treatment during the past 12 months showed a significant increase (p<0.05) with exposure to NO2 [1.67, 95% confidence intervals (CIs) 1.03–2.71] in the complex source zones. The frequency of allergic rhinitis treatment during the past 12 months increased significantly with exposure to Black Carbon (1.60, 95% CIs 1.36–1.90) (p<0.001), SO2 (1.09, 95% CIs 1.01–1.17) (p<0.05), NO2 (1.18, 95% CIs 1.07–1.30) (p<0.01) for all subjects. Conclusion In terms of supporting children's health, care, and prevention related to major spaces for children, such as school zones, spaces used in coming to and leaving school, playgrounds, and classrooms are essential to ensuring not only the safety of children from traffic accidents but also their protection from local traffic pollutants and various hazardous environmental factors. PMID:26996571

Atlanta Rail Yard Study: Evaluation of local-scale air pollution ...

EPA Pesticide Factsheets

Intermodal rail yards are important nodes in the freight transportation network, where freight is organized and moved from one mode of transport to another, critical equipment is serviced, and freight is routed to its next destination. Rail yard environments are also areas with multiple sources of air pollutant emissions (e.g., heavy-duty vehicles, locomotives, cranes), which may affect local air quality in residential areas nearby. In order to understand emissions and related air quality impacts, two field studies took place over the time span of 2010-2012 to measure air pollution trends in close proximity to the Inman and Tilford rail yard complex in Atlanta, GA. One field study involved long-term stationary monitoring of black carbon, fine particles, and carbon dioxide at two stations nearby the rail yard. In addition, a second field study performed intensive mobile air monitoring for a one month period in the summer of 2012 at a roadway network surrounding the rail yard complex and measured a comprehensive array of pollutants. Real-time mobile particulate measurements included particle counts, extinction coefficient, black carbon via light-absorption and particle incandescence, and particle composition derived by aerosol mass spectrometry. Gas-phase measurements included oxides of nitrogen, sulfur dioxide, carbon dioxide, and air toxics (e.g., benzene). Both sets of measurements determined detectable local influence from rail yard-related emissions.

Atmospheric Carbon Dioxide and the Global Carbon Cycle: The Key Uncertainties

DOE R&D Accomplishments Database

Peng, T. H.; Post, W. M.; DeAngelis, D. L.; Dale, V. H.; Farrell, M. P.

1987-12-01

The biogeochemical cycling of carbon between its sources and sinks determines the rate of increase in atmospheric CO{sub 2} concentrations. The observed increase in atmospheric CO{sub 2} content is less than the estimated release from fossil fuel consumption and deforestation. This discrepancy can be explained by interactions between the atmosphere and other global carbon reservoirs such as the oceans, and the terrestrial biosphere including soils. Undoubtedly, the oceans have been the most important sinks for CO{sub 2} produced by man. But, the physical, chemical, and biological processes of oceans are complex and, therefore, credible estimates of CO{sub 2} uptake can probably only come from mathematical models. Unfortunately, one- and two-dimensional ocean models do not allow for enough CO{sub 2} uptake to accurately account for known releases. Thus, they produce higher concentrations of atmospheric CO{sub 2} than was historically the case. More complex three-dimensional models, while currently being developed, may make better use of existing tracer data than do one- and two-dimensional models and will also incorporate climate feedback effects to provide a more realistic view of ocean dynamics and CO{sub 2} fluxes. The instability of current models to estimate accurately oceanic uptake of CO{sub 2} creates one of the key uncertainties in predictions of atmospheric CO{sub 2} increases and climate responses over the next 100 to 200 years.

Quantifying uncertainties of permafrost carbon-climate feedbacks

NASA Astrophysics Data System (ADS)

Burke, Eleanor J.; Ekici, Altug; Huang, Ye; Chadburn, Sarah E.; Huntingford, Chris; Ciais, Philippe; Friedlingstein, Pierre; Peng, Shushi; Krinner, Gerhard

2017-06-01

The land surface models JULES (Joint UK Land Environment Simulator, two versions) and ORCHIDEE-MICT (Organizing Carbon and Hydrology in Dynamic Ecosystems), each with a revised representation of permafrost carbon, were coupled to the Integrated Model Of Global Effects of climatic aNomalies (IMOGEN) intermediate-complexity climate and ocean carbon uptake model. IMOGEN calculates atmospheric carbon dioxide (CO2) and local monthly surface climate for a given emission scenario with the land-atmosphere CO2 flux exchange from either JULES or ORCHIDEE-MICT. These simulations include feedbacks associated with permafrost carbon changes in a warming world. Both IMOGEN-JULES and IMOGEN-ORCHIDEE-MICT were forced by historical and three alternative future-CO2-emission scenarios. Those simulations were performed for different climate sensitivities and regional climate change patterns based on 22 different Earth system models (ESMs) used for CMIP3 (phase 3 of the Coupled Model Intercomparison Project), allowing us to explore climate uncertainties in the context of permafrost carbon-climate feedbacks. Three future emission scenarios consistent with three representative concentration pathways were used: RCP2.6, RCP4.5 and RCP8.5. Paired simulations with and without frozen carbon processes were required to quantify the impact of the permafrost carbon feedback on climate change. The additional warming from the permafrost carbon feedback is between 0.2 and 12 % of the change in the global mean temperature (ΔT) by the year 2100 and 0.5 and 17 % of ΔT by 2300, with these ranges reflecting differences in land surface models, climate models and emissions pathway. As a percentage of ΔT, the permafrost carbon feedback has a greater impact on the low-emissions scenario (RCP2.6) than on the higher-emissions scenarios, suggesting that permafrost carbon should be taken into account when evaluating scenarios of heavy mitigation and stabilization. Structural differences between the land surface models (particularly the representation of the soil carbon decomposition) are found to be a larger source of uncertainties than differences in the climate response. Inertia in the permafrost carbon system means that the permafrost carbon response depends on the temporal trajectory of warming as well as the absolute amount of warming. We propose a new policy-relevant metric - the frozen carbon residence time (FCRt) in years - that can be derived from these complex land surface models and used to quantify the permafrost carbon response given any pathway of global temperature change.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martinez, Jorge L.; Lin, Hsiu-Jung; Lee, Wei-Tsung

The new iron(IV) nitride complex PhB( iPr 2Im) 3Fe≡N reacts with two equivalents of bis(diisopropylamino)cyclopropenylidene (BAC) to provide PhB( iPr 2Im) 3Fe(CN)(N 2)(BAC). This unusual example of a four-electron reaction involves carbon atom transfer from BAC to create a cyanide ligand along with the alkyne iPr 2N-C≡C-N iPr 2. The iron complex is in equilibrium with an N 2- free species. Further reaction with CO leads to formation of a CO analogue, which can be independently prepared using NaCN as the cyanide source, while reaction with B(C 6F 5) 3 provides the cyanoborane derivative.

A Review Study on Macrolides Isolated from Cyanobacteria.

PubMed

Wang, Mengchuan; Zhang, Jinrong; He, Shan; Yan, Xiaojun

2017-04-26

Cyanobacteria are rich sources of structurally-diverse molecules with promising pharmacological activities. Marine cyanobacteria have been proven to be true producers of some significant bioactive metabolites from marine invertebrates. Macrolides are a class of bioactive compounds isolated from marine organisms, including marine microorganisms in particular. The structural characteristics of macrolides from cyanobacteria mainly manifest in the diversity of carbon skeletons, complexes of chlorinated thiazole-containing molecules and complex spatial configuration. In the present work, we systematically reviewed the structures and pharmacological activities of macrolides from cyanobacteria. Our data would help establish an effective support system for the discovery and development of cyanobacterium-derived macrolides.

Tunable far infrared laser spectrometers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blake, G.A.; Laughlin, K.B.; Cohen, R.C.

The state of the art in far infrared (FIR) spectroscopy is reviewed. The development of tunable, coherent FIR radiation sources is discussed. Applications of tunable FIR laser spectrometers for measurement of rotational spectra and dipole moments of molecular ions and free radicals, vibration-rotation-tunneling (VRT) spectra of weakly bound complexes, and vibration-rotation spectra of linear carbon clusters are presented. A detailed description of the Berkeley tunable FIR laser spectrometers is presented in the following article.

Analysis of Active Methylotrophic Communities: When DNA-SIP Meets High-Throughput Technologies.

PubMed

Taubert, Martin; Grob, Carolina; Howat, Alexandra M; Burns, Oliver J; Chen, Yin; Neufeld, Josh D; Murrell, J Colin

2016-01-01

Methylotrophs are microorganisms ubiquitous in the environment that can metabolize one-carbon (C1) compounds as carbon and/or energy sources. The activity of these prokaryotes impacts biogeochemical cycles within their respective habitats and can determine whether these habitats act as sources or sinks of C1 compounds. Due to the high importance of C1 compounds, not only in biogeochemical cycles, but also for climatic processes, it is vital to understand the contributions of these microorganisms to carbon cycling in different environments. One of the most challenging questions when investigating methylotrophs, but also in environmental microbiology in general, is which species contribute to the environmental processes of interest, or "who does what, where and when?" Metabolic labeling with C1 compounds substituted with (13)C, a technique called stable isotope probing, is a key method to trace carbon fluxes within methylotrophic communities. The incorporation of (13)C into the biomass of active methylotrophs leads to an increase in the molecular mass of their biomolecules. For DNA-based stable isotope probing (DNA-SIP), labeled and unlabeled DNA is separated by isopycnic ultracentrifugation. The ability to specifically analyze DNA of active methylotrophs from a complex background community by high-throughput sequencing techniques, i.e. targeted metagenomics, is the hallmark strength of DNA-SIP for elucidating ecosystem functioning, and a protocol is detailed in this chapter.

Formation and dissociation of proteasome storage granules are regulated by cytosolic pH.

PubMed

Peters, Lee Zeev; Hazan, Rotem; Breker, Michal; Schuldiner, Maya; Ben-Aroya, Shay

2013-05-27

The 26S proteasome is the major protein degradation machinery of the cell and is regulated at many levels. One mode of regulation involves accumulation of proteasomes in proteasome storage granules (PSGs) upon glucose depletion. Using a systematic robotic screening approach in yeast, we identify trans-acting proteins that regulate the accumulation of proteasomes in PSGs. Our dataset was enriched for subunits of the vacuolar adenosine triphosphatase (V-ATPase) complex, a proton pump required for vacuole acidification. We show that the impaired ability of V-ATPase mutants to properly govern intracellular pH affects the kinetics of PSG formation. We further show that formation of other protein aggregates upon carbon depletion also is triggered in mutants with impaired activity of the plasma membrane proton pump and the V-ATPase complex. We thus identify cytosolic pH as a specific cellular signal involved both in the glucose sensing that mediates PSG formation and in a more general mechanism for signaling carbon source exhaustion.

Structural and mechanistic aspects of Mn-oxo and co-based compounds in water oxidation catalysis and potential applications in solar fuel production.

PubMed

Hou, Harvey J M

2010-08-01

To address the issues of energy crisis and global warming, novel renewable carbon-free or carbon-neutral energy sources must be identified and developed. A deeper understanding of photosynthesis is the key to provide a solid foundation to facilitate this transformation. To mimic the water oxidation of photosystem II oxygen evolving complex, Mn-oxo complexes and Co-phosphate catalytic material were discovered in solar energy storage. Building on these discoveries, recent advances in solar energy conversion showed a compelling working principle by combing the active Mn-oxo and Co-based catalysts in water splitting with semiconductor hetero-nanostructures for effective solar energy harnessing. In this review the appealing systems including Mn-oxo tetramer/Nafion, Mn-oxo dimer/TiO(2), Mn-oxo oligomer/WO(3), Co-Pi/Fe(2)O(3), and Co-Pi/ZnO are summarized and discussed. These accomplishments offer a promising framework and have a profound impact in the field of solar fuel production.

The role of branch architecture in assimilate production and partitioning: the example of apple (Malus domestica)

PubMed Central

Fanwoua, Julienne; Bairam, Emna; Delaire, Mickael; Buck-Sorlin, Gerhard

2014-01-01

Understanding the role of branch architecture in carbon production and allocation is essential to gain more insight into the complex process of assimilate partitioning in fruit trees. This mini review reports on the current knowledge of the role of branch architecture in carbohydrate production and partitioning in apple. The first-order carrier branch of apple illustrates the complexity of branch structure emerging from bud activity events and encountered in many fruit trees. Branch architecture influences carbon production by determining leaf exposure to light and by affecting leaf internal characteristics related to leaf photosynthetic capacity. The dynamics of assimilate partitioning between branch organs depends on the stage of development of sources and sinks. The sink strength of various branch organs and their relative positioning on the branch also affect partitioning. Vascular connections between branch organs determine major pathways for branch assimilate transport. We propose directions for employing a modeling approach to further elucidate the role of branch architecture on assimilate partitioning. PMID:25071813

Status of ion sources at National Institute of Radiological Sciences.

PubMed

Kitagawa, A; Fujita, T; Goto, A; Hattori, T; Hamano, T; Hojo, S; Honma, T; Imaseki, H; Katagiri, K; Muramatsu, M; Sakamoto, Y; Sekiguchi, M; Suda, M; Sugiura, A; Suya, N

2012-02-01

The National Institute of Radiological Sciences (NIRS) maintains various ion accelerators in order to study the effects of radiation of the human body and medical uses of radiation. Two electrostatic tandem accelerators and three cyclotrons delivered by commercial companies have offered various life science tools; these include proton-induced x-ray emission analysis (PIXE), micro beam irradiation, neutron exposure, and radioisotope tracers and probes. A duoplasmatron, a multicusp ion source, a penning ion source (PIG), and an electron cyclotron resonance ion source (ECRIS) are in operation for these purposes. The Heavy-Ion Medical Accelerator in Chiba (HIMAC) is an accelerator complex for heavy-ion radiotherapy, fully developed by NIRS. HIMAC is utilized not only for daily treatment with the carbon beam but also for fundamental experiments. Several ECRISs and a PIG at HIMAC satisfy various research and clinical requirements.

Status of ion sources at National Institute of Radiological Sciencesa)

NASA Astrophysics Data System (ADS)

Kitagawa, A.; Fujita, T.; Goto, A.; Hattori, T.; Hamano, T.; Hojo, S.; Honma, T.; Imaseki, H.; Katagiri, K.; Muramatsu, M.; Sakamoto, Y.; Sekiguchi, M.; Suda, M.; Sugiura, A.; Suya, N.

2012-02-01

The National Institute of Radiological Sciences (NIRS) maintains various ion accelerators in order to study the effects of radiation of the human body and medical uses of radiation. Two electrostatic tandem accelerators and three cyclotrons delivered by commercial companies have offered various life science tools; these include proton-induced x-ray emission analysis (PIXE), micro beam irradiation, neutron exposure, and radioisotope tracers and probes. A duoplasmatron, a multicusp ion source, a penning ion source (PIG), and an electron cyclotron resonance ion source (ECRIS) are in operation for these purposes. The Heavy-Ion Medical Accelerator in Chiba (HIMAC) is an accelerator complex for heavy-ion radiotherapy, fully developed by NIRS. HIMAC is utilized not only for daily treatment with the carbon beam but also for fundamental experiments. Several ECRISs and a PIG at HIMAC satisfy various research and clinical requirements.

Visualization of complex DNA double-strand breaks in a tumor treated with carbon ion radiotherapy

PubMed Central

Oike, Takahiro; Niimi, Atsuko; Okonogi, Noriyuki; Murata, Kazutoshi; Matsumura, Akihiko; Noda, Shin-Ei; Kobayashi, Daijiro; Iwanaga, Mototaro; Tsuchida, Keisuke; Kanai, Tatsuaki; Ohno, Tatsuya; Shibata, Atsushi; Nakano, Takashi

2016-01-01

Carbon ion radiotherapy shows great potential as a cure for X-ray-resistant tumors. Basic research suggests that the strong cell-killing effect induced by carbon ions is based on their ability to cause complex DNA double-strand breaks (DSBs). However, evidence supporting the formation of complex DSBs in actual patients is lacking. Here, we used advanced high-resolution microscopy with deconvolution to show that complex DSBs are formed in a human tumor clinically treated with carbon ion radiotherapy, but not in a tumor treated with X-ray radiotherapy. Furthermore, analysis using a physics model suggested that the complexity of radiotherapy-induced DSBs is related to linear energy transfer, which is much higher for carbon ion beams than for X-rays. Visualization of complex DSBs in clinical specimens will help us to understand the anti-tumor effects of carbon ion radiotherapy. PMID:26925533

Isolation of Acinetobacter from Soil and Water

PubMed Central

Baumann, Paul

1968-01-01

An enrichment culture procedure for isolating members of the genus Acinetobacter from soil and water is described. It involves the use of vigorously aerated mineral media at relative low pH, supplemented with acetate or other suitable carbon source and nitrate as nitrogen source. With this method, virtually all samples of soil and water yielded representatives of this genus. Semiquantitative comparisons of the numbers of Acinetobacter and of all bacteria capable of aerobic growth in a complex medium revealed that Acinetobacter constituted no less than 0.001% of the total heterotrophic aerobic population in soil and water and was one of the predominant organisms in some water samples. PMID:4874313

Molecular Diversity of Brown Carbon Chromophores in Biomass Burning Aerosol

NASA Astrophysics Data System (ADS)

Lin, P.; Laskin, A.; Laskin, J.; Fleming, L.; Nizkorodov, S.

2017-12-01

Brown carbon (BrC) is ubiquitous in the atmosphere and significant contributor to climate forcing. Understanding the environmental effects of BrC, its sources, formation, and atmospheric transformation mechanisms requires identification of BrC chromophores and characterization of their light-absorption properties. In this study, we investigate the chemical composition, molecular identity and optical properties of BrC chromophores associated with biomass burning aerosols emitted from burns of different biofuels during the NOAA FIREX/FireLab experiment. The results show that BrC in the biomass burning smoke contains organic compounds of various molecular structures, polarities, and volatilities. The relative contributions to light absorption from different classes of chromophores such as nitro-phenols, polycyclic aromatic hydrocarbons (PAHs), nitro-PAHs and heterocyclic PAHs are quantified and are shown to be diverse among aerosol samples from different biofuel sources. Despite complexity of BrC, grouping its chromophores according to their polarity and volatility may simplify the parameters for modelling input.

Biotechnological Potential of Agro-Industrial Wastes as a Carbon Source to Thermostable Polygalacturonase Production in Aspergillus niveus.

PubMed

Maller, Alexandre; Damásio, André Ricardo Lima; da Silva, Tony Marcio; Jorge, João Atílio; Terenzi, Héctor Francisco; Polizeli, Maria de Lourdes Teixeira de Moraes

2011-01-01

Agro-industrial wastes are mainly composed of complex polysaccharides that might serve as nutrients for microbial growth and production of enzymes. The aim of this work was to study polygalacturonase (PG) production by Aspergillus niveus cultured on liquid or solid media supplemented with agro-industrial wastes. Submerged fermentation (SbmF) was tested using Czapeck media supplemented with 28 different carbon sources. Among these, orange peel was the best PG inducer. On the other hand, for solid state fermentation (SSF), lemon peel was the best inducer. By comparing SbmF with SSF, both supplemented with lemon peel, it was observed that PG levels were 4.4-fold higher under SSF. Maximum PG activity was observed at 55°C and pH 4.0. The enzyme was stable at 60°C for 90 min and at pH 3.0-5.0. The properties of this enzyme, produced on inexpensive fermentation substrates, were interesting and suggested several biotechnological applications.

Improving source identification of Atlanta aerosol using temperature resolved carbon fractions in positive matrix factorization

NASA Astrophysics Data System (ADS)

Kim, Eugene; Hopke, Philip K.; Edgerton, Eric S.

Daily integrated PM 2.5 (particulate matter ⩽2.5 μm in aerodynamic diameter) composition data including eight individual carbon fractions collected at the Jefferson Street monitoring site in Atlanta were analyzed with positive matrix factorization (PMF). Particulate carbon was analyzed using the thermal optical reflectance method that divides carbon into four organic carbon (OC), pyrolized organic carbon (OP), and three elemental carbon (EC) fractions. A total of 529 samples and 28 variables were measured between August 1998 and August 2000. PMF identified 11 sources in this study: sulfate-rich secondary aerosol I (50%), on-road diesel emissions (11%), nitrate-rich secondary aerosol (9%), wood smoke (7%), gasoline vehicle (6%), sulfate-rich secondary aerosol II (6%), metal processing (3%), airborne soil (3%), railroad traffic (3%), cement kiln/carbon-rich (2%), and bus maintenance facility/highway traffic (2%). Differences from previous studies using only the traditional OC and EC data (J. Air Waste Manag. Assoc. 53(2003a)731; Atmos Environ. (2003b)) include four traffic-related combustion sources (gasoline vehicle, on-road diesel, railroad, and bus maintenance facility) containing carbon fractions whose abundances were different between the various sources. This study indicates that the temperature resolved fractional carbon data can be utilized to enhance source apportionment study, especially with respect to the separation of diesel emissions from gasoline vehicle sources. Conditional probability functions using surface wind data and identified source contributions aid the identifications of local point sources.

Sedimentary organic matter sources, benthic consumption and burial in west Spitsbergen fjords - Signs of maturing of Arctic fjordic systems?

NASA Astrophysics Data System (ADS)

Zaborska, Agata; Włodarska-Kowalczuk, Maria; Legeżyńska, Joanna; Jankowska, Emilia; Winogradow, Aleksandra; Deja, Kajetan

2018-04-01

Mature ecosystems sequester little organic carbon (Corg) in sediments, as the complex and effective food webs consume most available organic matter within the water column and sediment, in contrast to young systems, where a large proportion of Corg is buried in deeper sediment layers. In this paper we hypothesize that "warmer" Atlantic water influenced fjord exhibits the 'mature' system features as compared to "cooler" Arctic water influenced fjord. Corg concentrations, sources and burial rates, as well as macrobenthic community standing stocks, taxonomic and functional composition and carbon demand, were compared in two west Spitsbergen fjords that are to different extents influenced by Atlantic water and can be treated as representing a cold one (Hornsund) and a warm one (Kongsfjorden). Water, sediments and macrofauna were collected at three stations in the central basin of each fjord. Corg, Ntot, δ13Corg and δ15N were measured in suspended matter, sediment cores and possible organic matter sources. The composition of sources of sedimentary organic matter was modeled by Mix-SIAR Bayesian stable isotope mixing models. The 210Pb method was used to calculate sediment accumulation rates, Corg accumulation and burial rates. The sedimentary Corg concentration and accumulation rate were larger in Hornsund than in Kongsfjorden. The contributions of pelagic sources to the Corg in sediments were similar in both fjords, macroalgal detritus had a higher importance in Kongsfjorden, while terrestrial sources were more important in Hornsund. Similar density and species richness were noted in both fjords, but higher biomass, individual biomass, production and carbon demand of benthic communities were noted in Kongsfjorden despite the lower amounts of Corg in sediments, indicating that macrobenthos responds to quality rather than quantity of available food. Subsurface tube-building conveyer belt detritus feeders (maldanids and oweniids) were responsible for higher standing stocks and carbon consumption in Kongsfjorden. As a result of the lower Corg pool and higher benthic mineralization, the burial rates in Kongsfjorden were much lower (15 g of Corg m- 2 yr- 1) than in Hornsund (38 g of Corg m- 2 yr- 1). Our study indicates that warming of the high latitude fjordic environments may reshape the relative proportions of organic carbon sources and induce maturing of the sea bottom systems, in terms of development of stable, biologically accommodated benthic communities which more efficiently mineralize organic matter and consequently lower sequestration of organic matter in deeper sediments.

40 CFR 458.45 - Standards of performance for new sources.

Code of Federal Regulations, 2011 CFR

2011-07-01

...) EFFLUENT GUIDELINES AND STANDARDS CARBON BLACK MANUFACTURING POINT SOURCE CATEGORY Carbon Black Lamp... paragraph, which may be discharged from the carbon black lamp process by a new source subject to the...

Biomass production and secretion of hydrolytic enzymes are influenced by the structural complexity of the nitrogen source in Fusarium oxysporum and Aspergillus nidulans.

PubMed

da Silva, M C; Bertolini, M C; Ernandes, J R

2001-01-01

The structural complexity of the nitrogen sources strongly affects biomass production and secretion of hydrolytic enzymes in filamentous fungi. Fusarium oxysporum and Aspergillus nidulans were grown in media containing glucose or starch, and supplemented with a nitrogen source varying from a single ammonium salt (ammonium sulfate) to free amino acids (casamino acids), peptides (peptone) and protein (gelatin). In glucose, when the initial pH was adjusted to 5.0, for both microorganisms, higher biomass production occurred upon supplementation with a nitrogen source in the peptide form (peptone and gelatin). With a close to neutrality pH, biomass accumulation was lower only in the presence of the ammonium salt. When grown in starch, biomass accumulation and secretion of hydrolytic enzymes (amylolytic and proteolytic) by Fusarium also depended on the nature of the nitrogen supplement and the pH. When the initial pH was adjusted to 5.0, higher growth and higher amylolytic activities were detected in the media supplemented with peptone, gelatin and casamino acids. However, at pH 7.0, higher biomass accumulation and higher amylolytic activities were observed upon supplementation with peptone or gelatin. Ammonium sulfate and casamino acids induced a lower production of biomass, and a different level of amylolytic enzyme secretion: high in ammonium sulfate and low in casamino acids. Secretion of proteolytic activity was always higher in the media supplemented with peptone and gelatin. Aspergillus, when grown in starch, was not as dependent as Fusarium on the nature of nitrogen source or the pH. The results described in this work indicate that the metabolism of fungi is regulated not only by pH, but also by the level of structural complexity of the nitrogen source in correlation to the carbon source.

Fungal Taxa Target Different Carbon Substrates in Harvard Forest Soils

NASA Astrophysics Data System (ADS)

Hanson, C. A.; Allison, S. D.; Wallenstein, M. D.; Mellilo, J. M.; Treseder, K. K.

2006-12-01

The mineralization of soil organic carbon is a major component of the global carbon cycle and is largely controlled by soil microbial communities. However, little is known about the functional roles of soil microbes or whether different microbial taxa target different carbon substrates under natural conditions. To examine this possibility, we assessed the community composition of active fungi by using a novel nucleotide analog technique in soils from the Harvard Forest. We hypothesized that fungal community composition would shift in response to the addition of different substrates and that specific fungal taxa would respond differentially to particular carbon sources. To test this hypothesis, we added a nucleotide analog probe directly to soils in conjunction with one of five carbon compounds of increasing recalcitrance: glycine, sucrose, cellulose, tannin-protein complex, and lignin. During 48 hour incubations, the nucleotide analog was incorporated into newly replicated DNA of soil organisms that proliferated following the addition of the substrates. In this way, we labeled the DNA of microbes that respond to a particular carbon source. Labeled DNA was isolated and fungal Internal Transcribed Spacer (ITS) regions of ribosomal DNA (rDNA) were sequenced and analyzed to identify active fungi to near-species resolution. Diversity analyses at the ≥97% sequence similarity level indicated that taxonomic richness was greater under cellulose (Shannon Index: 3.23 ± 0.11 with ± 95% CI) and lignin (2.87 ± 0.15) additions than the other treatments (2.34 ± 0.16 to 2.64 ± 0.13). In addition, community composition of active fungi shifted under glycine, sucrose, and cellulose additions. Specifically, the community under glycine was significantly different from communities under control, cellulose, and tannin-protein (P<0.05). Additionally, the sucrose and cellulose communities were marginally different from the control community (P = 0.059 and 0.054, respectively) and each other (P = 0.058). Together these results support our hypothesis that fungal communities change in response to different carbon sources. We found 11 fungal operational taxonomic units (OTUs) whose relative abundances differed at least marginally significantly among substrates. One OTU related to Mortierella increased in abundance under cellulose, but was absent or rare under the other substrates. Another OTU related to an unidentified Basidiomycete was only present under lignin addition, while yet another OTU closely related to Mortierella macrocystis greatly increased in abundance under tannin-protein and slightly increased in response to lignin and sucrose. This confirms our hypothesis that particular taxa respond differently to specific carbon substrates and suggests that some fungal taxa may specialize in the break-down of particular carbon sources in soils. Overall, our results imply that microbes have varying roles in the mineralization of soil carbon, and thus microbial community composition may be an important control over ecosystem carbon dynamics and storage, especially in relation to global change.

Dual-Carbon sources fuel the OCS deep-reef Community, a stable isotope investigation

USGS Publications Warehouse

Sulak, Kenneth J.; Berg, J.; Randall, Michael T.; Dennis, George D.; Brooks, R.A.

2008-01-01

The hypothesis that phytoplankton is the sole carbon source for the OCS deep-reef community (>60 m) was tested. Trophic structure for NE Gulf of Mexico deep reefs was analyzed via carbon and nitrogen stable isotopes. Carbon signatures for 114 entities (carbon sources, sediment, fishes, and invertebrates) supported surface phytoplankton as the primary fuel for the deep reef. However, a second carbon source, the macroalga Sargassum, with its epiphytic macroalgal associate, Cladophora liniformis, was also identified. Macroalgal carbon signatures were detected among 23 consumer entities. Most notably, macroalgae contributed 45 % of total carbon to the 13C isotopic spectrum of the particulate-feeding reef-crest gorgonian Nicella. The discontinuous spatial distribution of some sessile deep-reef invertebrates utilizing pelagic macroalgal carbon may be trophically tied to the contagious distribution of Sargassum biomass along major ocean surface features.

Functionalized Natural Carbon-Supported Nanoparticles as Excellent Catalysts for Hydrocarbon Production.

PubMed

Sun, Jian; Guo, Lisheng; Ma, Qingxiang; Gao, Xinhua; Yamane, Noriyuki; Xu, Hengyong; Tsubaki, Noritatsu

2017-02-01

We report a one-pot and eco-friendly synthesis of carbon-supported cobalt nanoparticles, achieved by carbonization of waste biomass (rice bran) with a cobalt source. The functionalized biomass provides carbon microspheres as excellent catalyst support, forming a unique interface between hydrophobic and hydrophilic groups. The latter, involving hydroxyl and amino groups, can catch much more active cobalt nanoparticles on surface for Fischer-Tropsch synthesis than chemical carbon. The loading amount of cobalt on the final catalyst is much higher than that prepared with a chemical carbon source, such as glucose. The proposed concept of using a functionalized natural carbon source shows great potential compared with conventional carbon sources, and will be meaningful for other fields concerning carbon support, such as heterogeneous catalysis or electrochemical fields. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Formation of Hydride-Meisenheimer Complexes of Picric Acid (2,4,6-Trinitrophenol) and 2,4-Dinitrophenol during Mineralization of Picric Acid by Nocardioides sp. Strain CB 22-2

PubMed Central

Behrend, Christian; Heesche-Wagner, Kerstin

1999-01-01

There are only a few examples of microbial conversion of picric acid (2,4,6-trinitrophenol). None of the organisms that have been described previously is able to use this compound as a sole source of carbon, nitrogen, and energy at high rates. In this study we isolated and characterized a strain, strain CB 22-2, that was able to use picric acid as a sole source of carbon and energy at concentrations up to 40 mM and at rates of 1.6 mmol · h−1 · g (dry weight) of cells−1 in continuous cultures and 920 μmol · h−1 · g (dry weight) of cells−1 in flasks. In addition, this strain was able to use picric acid as a sole source of nitrogen at comparable rates in a nitrogen-free medium. Biochemical characterization and 16S ribosomal DNA analysis revealed that strain CB 22-2 is a Nocardioides sp. strain. High-pressure liquid chromatography and UV-visible light data, the low residual chemical oxygen demand, and the stoichiometric release of 2.9 ± 0.1 mol of nitrite per mol of picric acid provided strong evidence that complete mineralization of picric acid occurred. During transformation, the metabolites detected in the culture supernatant were the [H−]-Meisenheimer complexes of picric acid and 2,4-dinitrophenol (H−-DNP), as well as 2,4-dinitrophenol. Experiments performed with crude extracts revealed that H−-DNP formation indeed is a physiologically relevant step in picric acid metabolism. PMID:10103224

Assessment of Contribution of Contemporary Carbon Sources to Size-Fractionated Particulate Matter and Time-Resolved Bulk Particulate Matter Using the Measurement of Radiocarbon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hwang, H M; Young, T M; Buchholz, B A

2009-04-16

This study was motivated by a desire to improve understanding of the sources contributing to the carbon that is an important component of airborne particulate matter (PM). The ultimate goal of this project was to lay a ground work for future tools that might be easily implemented with archived or routinely collected samples. A key feature of this study was application of radiocarbon measurement that can be interpreted to indicate the relative contributions from fossil and non-fossil carbon sources of atmospheric PM. Size-resolved PM and time-resolved PM{sub 10} collected from a site in Sacramento, CA in November 2007 (Phase I)more » and March 2008 (Phase II) were analyzed for radiocarbon and source markers such as levoglucosan, cholesterol, and elemental carbon. Radiocarbon data indicates that the contributions of non-fossil carbon sources were much greater than that from fossil carbon sources in all samples. Radiocarbon and source marker measurements confirm that a greater contribution of non-fossil carbon sources in Phase I samples was highly likely due to residential wood combustion. The present study proves that measurement of radiocarbon and source markers can be readily applied to archived or routinely collected samples for better characterization of PM sources. More accurate source apportionment will support ARB in developing more efficient control strategies.« less

Phosphate Detection through a Cost-Effective Carbon Black Nanoparticle-Modified Screen-Printed Electrode Embedded in a Continuous Flow System.

PubMed

Talarico, Daria; Cinti, Stefano; Arduini, Fabiana; Amine, Aziz; Moscone, Danila; Palleschi, Giuseppe

2015-07-07

An automatable flow system for the continuous and long-term monitoring of the phosphate level has been developed using an amperometric detection method based on the use of a miniaturized sensor. This method is based on the monitoring of an electroactive complex obtained by the reaction between phosphate and molybdate that is consequently reduced at the electrode surface. The use of a screen-printed electrode modified with carbon black nanoparticles (CBNPs) leads to the quantification of the complex at low potential, because CBNPs are capable of electrocatalitically enhancing the phosphomolybdate complex reduction at +125 mV versus Ag/AgCl without fouling problems. The developed system also incorporates reagents and waste storage and is connected to a portable potentiostat for rapid detection and quantification of phosphate. Main analytical parameters, such as working potential, reagent concentration, type of cell, and flow rate, were evaluated and optimized. This system was characterized by a low detection limit (6 μM). Interference studies were carried out. Good recovery percentages comprised between 89 and 131.5% were achieved in different water sources, highlighting its suitability for field measurements.

The use of fermentation liquid of wastewater primary sedimentation sludge as supplemental carbon source for denitrification based on enhanced anaerobic fermentation.

PubMed

Liu, Feng; Tian, Yu; Ding, Yi; Li, Zhipeng

2016-11-01

Wastewater primary sedimentation sludge was prepared into fermentation liquid as denitrification carbon source, and the main components of fermentation liquid was short-chain volatile fatty acids. Meanwhile, the acetic acid and propionic acid respectively accounted for about 29.36% and 26.56% in short-chain volatile fatty acids. The performance of fermentation liquid, methanol, acetic acid, propionic acid and glucose used as sole carbon source were compared. It was found that the denitrification rate with fermentation liquid as carbon source was 0.17mgNO3(-)-N/mg mixed liquor suspended solid d, faster than that with methanol, acetic acid, and propionic acid as sole carbon source, and lower than that with glucose as sole carbon source. For the fermentation liquid as carbon source, the transient accumulation of nitrite was insignificantly under different initial total nitrogen concentration. Therefore, the use of fermentation liquid for nitrogen removal could improve denitrification rate, and reduce nitrite accumulation in denitrification process. Copyright © 2016 Elsevier Ltd. All rights reserved.

Synergistic microbial consortium for bioenergy generation from complex natural energy sources.

PubMed

Wang, Victor Bochuan; Yam, Joey Kuok Hoong; Chua, Song-Lin; Zhang, Qichun; Cao, Bin; Chye, Joachim Loo Say; Yang, Liang

2014-01-01

Microbial species have evolved diverse mechanisms for utilization of complex carbon sources. Proper combination of targeted species can affect bioenergy production from natural waste products. Here, we established a stable microbial consortium with Escherichia coli and Shewanella oneidensis in microbial fuel cells (MFCs) to produce bioenergy from an abundant natural energy source, in the form of the sarcocarp harvested from coconuts. This component is mostly discarded as waste. However, through its usage as a feedstock for MFCs to produce useful energy in this study, the sarcocarp can be utilized meaningfully. The monospecies S. oneidensis system was able to generate bioenergy in a short experimental time frame while the monospecies E. coli system generated significantly less bioenergy. A combination of E. coli and S. oneidensis in the ratio of 1:9 (v:v) significantly enhanced the experimental time frame and magnitude of bioenergy generation. The synergistic effect is suggested to arise from E. coli and S. oneidensis utilizing different nutrients as electron donors and effect of flavins secreted by S. oneidensis. Confocal images confirmed the presence of biofilms and point towards their importance in generating bioenergy in MFCs.

Anthropogenic combustion iron as a complex climate forcer

DOE PAGES

Matsui, Hitoshi; Mahowald, Natalie M.; Moteki, Nobuhiro; ...

2018-04-23

Atmospheric iron affects the global carbon cycle by modulating ocean biogeochemistry through the deposition of soluble iron to the ocean. Iron emitted by anthropogenic (fossil fuel) combustion is a source of soluble iron that is currently considered less important than other soluble iron sources, such as mineral dust and biomass burning. Here we show that the atmospheric burden of anthropogenic combustion iron is 8 times greater than previous estimates by incorporating recent measurements of anthropogenic magnetite into a global aerosol model. This new estimation increases the total deposition flux of soluble iron to southern oceans (30–90 °S) by 52%, withmore » a larger contribution of anthropogenic combustion iron than dust and biomass burning sources. The direct radiative forcing of anthropogenic magnetite is estimated to be 0.021 W m –2 globally and 0.22 W m –2 over East Asia. In conclusion, our results demonstrate that anthropogenic combustion iron is a larger and more complex climate forcer than previously thought, and therefore plays a key role in the Earth system.« less

Anthropogenic combustion iron as a complex climate forcer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsui, Hitoshi; Mahowald, Natalie M.; Moteki, Nobuhiro

Atmospheric iron affects the global carbon cycle by modulating ocean biogeochemistry through the deposition of soluble iron to the ocean. Iron emitted by anthropogenic (fossil fuel) combustion is a source of soluble iron that is currently considered less important than other soluble iron sources, such as mineral dust and biomass burning. Here we show that the atmospheric burden of anthropogenic combustion iron is 8 times greater than previous estimates by incorporating recent measurements of anthropogenic magnetite into a global aerosol model. This new estimation increases the total deposition flux of soluble iron to southern oceans (30–90 °S) by 52%, withmore » a larger contribution of anthropogenic combustion iron than dust and biomass burning sources. The direct radiative forcing of anthropogenic magnetite is estimated to be 0.021 W m –2 globally and 0.22 W m –2 over East Asia. In conclusion, our results demonstrate that anthropogenic combustion iron is a larger and more complex climate forcer than previously thought, and therefore plays a key role in the Earth system.« less

Constraints on primary and secondary particulate carbon sources using chemical tracer and 14C methods during CalNex-Bakersfield

NASA Astrophysics Data System (ADS)

Sheesley, Rebecca J.; Nallathamby, Punith Dev; Surratt, Jason D.; Lee, Anita; Lewandowski, Michael; Offenberg, John H.; Jaoui, Mohammed; Kleindienst, Tadeusz E.

2017-10-01

The present study investigates primary and secondary sources of organic carbon for Bakersfield, CA, USA as part of the 2010 CalNex study. The method used here involves integrated sampling that is designed to allow for detailed and specific chemical analysis of particulate matter (PM) in the Bakersfield airshed. To achieve this objective, filter samples were taken during thirty-four 23-hr periods between 19 May and 26 June 2010 and analyzed for organic tracers by gas chromatography - mass spectrometry (GC-MS). Contributions to organic carbon (OC) were determined by two organic tracer-based techniques: primary OC by chemical mass balance and secondary OC by a mass fraction method. Radiocarbon (14C) measurements of the total organic carbon were also made to determine the split between the modern and fossil carbon and thereby constrain unknown sources of OC not accounted for by either tracer-based attribution technique. From the analysis, OC contributions from four primary sources and four secondary sources were determined, which comprised three sources of modern carbon and five sources of fossil carbon. The major primary sources of OC were from vegetative detritus (9.8%), diesel (2.3%), gasoline (<1.0%), and lubricating oil impacted motor vehicle exhaust (30%); measured secondary sources resulted from isoprene (1.5%), α-pinene (<1.0%), toluene (<1.0%), and naphthalene (<1.0%, as an upper limit) contributions. The average observed organic carbon (OC) was 6.42 ± 2.33 μgC m-3. The 14C derived apportionment indicated that modern and fossil components were nearly equivalent on average; however, the fossil contribution ranged from 32 to 66% over the five week campaign. With the fossil primary and secondary sources aggregated, only 25% of the fossil organic carbon could not be attributed. Whereas, nearly 80% of the modern carbon could not be attributed to primary and secondary sources accessible to this analysis, which included tracers of biomass burning, vegetative detritus and secondary biogenic carbon. The results of the current study contributes source-based evaluation of the carbonaceous aerosol at CalNex Bakersfield.

Constraints on primary and secondary particulate carbon sources using chemical tracer and 14C methods during CalNex-Bakersfield

PubMed Central

Sheesley, Rebecca J.; Nallathamby, Punith Dev; Surratt, Jason D.; Lee, Anita; Lewandowski, Michael; Offenberg, John H.; Jaoui, Mohammed; Kleindienst, Tadeusz E.

2018-01-01

The present study investigates primary and secondary sources of organic carbon for Bakersfield, CA, USA as part of the 2010 CalNex study. The method used here involves integrated sampling that is designed to allow for detailed and specific chemical analysis of particulate matter (PM) in the Bakersfield airshed. To achieve this objective, filter samples were taken during thirty-four 23-hr periods between 19 May and 26 June 2010 and analyzed for organic tracers by gas chromatography – mass spectrometry (GC-MS). Contributions to organic carbon (OC) were determined by two organic tracer-based techniques: primary OC by chemical mass balance and secondary OC by a mass fraction method. Radiocarbon (14C) measurements of the total organic carbon were also made to determine the split between the modern and fossil carbon and thereby constrain unknown sources of OC not accounted for by either tracer-based attribution technique. From the analysis, OC contributions from four primary sources and four secondary sources were determined, which comprised three sources of modern carbon and five sources of fossil carbon. The major primary sources of OC were from vegetative detritus (9.8%), diesel (2.3%), gasoline (<1.0%), and lubricating oil impacted motor vehicle exhaust (30%); measured secondary sources resulted from isoprene (1.5%), α-pinene (<1.0%), toluene (<1.0%), and naphthalene (<1.0%, as an upper limit) contributions. The average observed organic carbon (OC) was 6.42 ± 2.33 μgC m−3. The 14C derived apportionment indicated that modern and fossil components were nearly equivalent on average; however, the fossil contribution ranged from 32-66% over the five week campaign. With the fossil primary and secondary sources aggregated, only 25% of the fossil organic carbon could not be attributed. Whereas, nearly 80% of the modern carbon could not be attributed to primary and secondary sources accessible to this analysis, which included tracers of biomass burning, vegetative detritus and secondary biogenic carbon. The results of the current study contributes source-based evaluation of the carbonaceous aerosol at CalNex Bakersfield. PMID:29681757

Geochemistry of glacial sediments in the area of the Bend massive sulfide deposit, north-central Wisconsin

USGS Publications Warehouse

Woodruff, L.G.; Attig, J.W.; Cannon, W.F.

2004-01-01

Geochemical exploration in northern Wisconsin has been problematic because of thick glacial overburden and complex stratigraphic record of glacial history. To assess till geochemical exploration in an area of thick glacial cover and complex stratigraphy samples of glacial materials were collected from cores from five rotasonic boreholes near a known massive sulfide deposit, the Bend deposit in north-central Wisconsin. Diamond drilling in the Bend area has defined a long, thin zone of mineralization at least partly intersected at the bedrock surface beneath 30-40 m of unconsolidated glacial sediments. The bedrock surface has remnant regolith and saprolite resulting from pre-Pleistocene weathering. Massive sulfide and mineralized rock collected from diamond drill core from the deposit contain high (10s to 10,000s ppm) concentrations of Ag, As, Au, Bi, Cu, Hg, Se, Te, and Tl. Geochemical properties of the glacial stratigraphic units helped clarify the sequence and source areas of several glacial ice advances preserved in the section. At least two till sheets are recognized. Over the zone of mineralization, saprolite and preglacial alluvial and lacustrine samples are preserved on the bedrock surface in a paleoriver valley. The overlying till sheet is a gray, silty carbonate till with a source hundreds of kilometers to the northwest of the study area. This gray till is overlain by red, sandy till with a source to the north in Proterozoic rocks of the Lake Superior area. The complex glacial stratigraphy confounds down-ice geochemical till exploration. The presence of remnant saprolite, preglacial sediment, and far-traveled carbonate till minimized glacial erosion of mineralized material. As a result, little evidence of down-ice glacial dispersion of lithologic or mineralogic indicators of Bend massive sulfide mineralization was found in the samples from the rotasonic cores. This study points out the importance of determining glacial stratigraphy and history, and identifying favorable lithologies required for geochemical exploration. Drift prospecting in Wisconsin and other areas near the outer limits of the Pleistocene ice sheets may not be unsuccessful, in part, because of complex stratigraphic sequences of multiple glaciations where deposition dominates over erosion. ?? 2004 Elsevier B.V. All rights reserved.

Electrochemical process for the preparation of nitrogen fertilizers

DOEpatents

Aulich, Ted R [Grand Forks, ND; Olson, Edwin S [Grand Forks, ND; Jiang, Junhua [Grand Forks, ND

2012-04-10

The present invention provides methods and apparatus for the preparation of nitrogen fertilizers including ammonium nitrate, urea, urea-ammonium nitrate, and/or ammonia, at low temperature and pressure, preferably at ambient temperature and pressure, utilizing a source of carbon, a source of nitrogen, and/or a source of hydrogen or hydrogen equivalent. Implementing an electrolyte serving as ionic charge carrier, (1) ammonium nitrate is produced via the reduction of a nitrogen source at the cathode and the oxidation of a nitrogen source at the anode; (2) urea or its isomers are produced via the simultaneous cathodic reduction of a carbon source and a nitrogen source; (3) ammonia is produced via the reduction of nitrogen source at the cathode and the oxidation of a hydrogen source or a hydrogen equivalent such as carbon monoxide or a mixture of carbon monoxide and hydrogen at the anode; and (4) urea-ammonium nitrate is produced via the simultaneous cathodic reduction of a carbon source and a nitrogen source, and anodic oxidation of a nitrogen source. The electrolyte can be aqueous, non-aqueous, or solid.

Impacts of continental arcs on global carbon cycling and climate

NASA Astrophysics Data System (ADS)

Lee, C. T.; Jiang, H.; Carter, L.; Dasgupta, R.; Cao, W.; Lackey, J. S.; Lenardic, A.; Barnes, J.; McKenzie, R.

2017-12-01

On myr timescales, climatic variability is tied to variations in atmospheric CO2, which in turn is driven by geologic sources of CO2 and modulated by the efficiency of chemical weathering and carbonate precipitation (sinks). Long-term variability in CO2 has largely been attributed to changes in mid-ocean ridge inputs or the efficiency of global weathering. For example, the Cretaceous greenhouse is thought to be related to enhanced oceanic crust production, while the late Cenozoic icehouse is attributed to enhanced chemical weathering associated with the Himalayan orogeny. Here, we show that continental arcs may play a more important role in controlling climate, both in terms of sources and sinks. Continental arcs differ from island arcs and mid-ocean ridges in that the continental plate through which arc magmas pass may contain large amounts of sedimentary carbonate, accumulated over the history of the continent. Interaction of arc magmas with crustal carbonates via assimilation, reaction or heating can significantly add to the mantle-sourced CO2 flux. Detrital zircons and global mapping of basement rocks shows that the length of continental arcs in the Cretaceous was more than twice that in the mid-Cenozoic; maps also show many of these arcs intersected crustal carbonates. The increased length of continental arc magmatism coincided with increased oceanic spreading rates, placing convergent margins into compression, which favors continental arcs. Around 50 Ma, however, nearly all the continental arcs in Eurasia and North America terminated as India collided with Eurasia and the western Pacific rolled back, initiating the Marianas-Tonga-Kermadec intra-oceanic subduction complex and possibly leading to a decrease in global CO2 production. Meanwhile, extinct continental arcs continued to erode, resulting in regionally enhanced chemical weathering unsupported by magmatic fluxes of CO2. Continental arcs, during their magmatic lifetimes, are thus a source of CO2, driving greenhouse climates, but after they die magmatically, they remain geomorphically active and become a net CO2 sink, helping to drive climate towards cooler conditions. Tectonic oscillations that drive fluctuations in the activity of continental arcs thus may be responsible for greenhouse-icehouse oscillations in the Phanerozoic.

Polyamidoamine-Decorated Nanodiamonds as a Hybrid Gene Delivery Vector and siRNA Structural Characterization at the Charged Interfaces.

PubMed

Lim, Dae Gon; Rajasekaran, Nirmal; Lee, Dukhee; Kim, Nam Ah; Jung, Hun Soon; Hong, Sungyoul; Shin, Young Kee; Kang, Eunah; Jeong, Seong Hoon

2017-09-20

Nanodiamonds have been discovered as a new exogenous material source in biomedical applications. As a new potent form of nanodiamond (ND), polyamidoamine-decorated nanodiamonds (PAMAM-NDs) were prepared for E7 or E6 oncoprotein-suppressing siRNA gene delivery for high risk human papillomavirus-induced cervical cancer, such as types 16 and 18. It is critical to understand the physicochemical properties of siRNA complexes immobilized on cationic solid ND surfaces in the aspect of biomolecular structural and conformational changes, as the new inert carbon material can be extended into the application of a gene delivery vector. A spectral study of siRNA/PAMAM-ND complexes using differential scanning calorimetry and circular dichroism spectroscopy proved that the hydrogen bonding and electrostatic interactions between siRNA and PAMAM-NDs decreased endothermic heat capacity. Moreover, siRNA/PAMAM-ND complexes showed low cell cytotoxicity and significant suppressing effects for forward target E6 and E7 oncogenic genes, proving functional and therapeutic efficacy. The cellular uptake of siRNA/PAMAM-ND complexes at 8 h was visualized by macropinocytes and direct endosomal escape of the siRNA/PAMAM-ND complexes. It is presumed that PAMAM-NDs provided a buffering cushion to adjust the pH and hard mechanical stress to escape endosomes. siRNA/PAMAM-ND complexes provide a potential organic/inorganic hybrid material source for gene delivery carriers.

How does cellulosome composition influence deconstruction of lignocellulosic substrates in Clostridium (Ruminiclostridium) thermocellum DSM 1313?

PubMed

Yoav, Shahar; Barak, Yoav; Shamshoum, Melina; Borovok, Ilya; Lamed, Raphael; Dassa, Bareket; Hadar, Yitzhak; Morag, Ely; Bayer, Edward A

2017-01-01

Bioethanol production processes involve enzymatic hydrolysis of pretreated lignocellulosic biomass into fermentable sugars. Due to the relatively high cost of enzyme production, the development of potent and cost-effective cellulolytic cocktails is critical for increasing the cost-effectiveness of bioethanol production. In this context, the multi-protein cellulolytic complex of Clostridium ( Ruminiclostridium ) thermocellum, the cellulosome, was studied here. C. thermocellum is known to assemble cellulosomes of various subunit (enzyme) compositions, in response to the available carbon source. In the current study, different carbon sources were used, and their influence on both cellulosomal composition and the resultant activity was investigated. Glucose, cellobiose, microcrystalline cellulose, alkaline-pretreated switchgrass, alkaline-pretreated corn stover, and dilute acid-pretreated corn stover were used as sole carbon sources in the growth media of C. thermocellum strain DSM 1313. The purified cellulosomes were compared for their activity on selected cellulosic substrates. Interestingly, cellulosomes derived from cells grown on lignocellulosic biomass showed no advantage in hydrolyzing the original carbon source used for their production. Instead, microcrystalline cellulose- and glucose-derived cellulosomes were equal or superior in their capacity to deconstruct lignocellulosic biomass. Mass spectrometry analysis revealed differential composition of catalytic and structural subunits (scaffoldins) in the different cellulosome samples. The most abundant catalytic subunits in all cellulosome types include Cel48S, Cel9K, Cel9Q, Cel9R, and Cel5G. Microcrystalline cellulose- and glucose-derived cellulosome samples showed higher endoglucanase-to-exoglucanase ratios and higher catalytic subunit-per-scaffoldin ratios compared to lignocellulose-derived cellulosome types. The results reported here highlight the finding that cellulosomes derived from cells grown on glucose and microcrystalline cellulose are more efficient in their action on cellulosic substrates than other cellulosome preparations. These results should be considered in the future development of C. thermocellum -based cellulolytic cocktails, designer cellulosomes, or engineering of improved strains for deconstruction of lignocellulosic biomass.

Effects of Light Quality and Intensity on Diurnal Patterns and Rates of Photo-Assimilate Translocation and Transpiration in Tomato Leaves.

PubMed

Lanoue, Jason; Leonardos, Evangelos D; Grodzinski, Bernard

2018-01-01

Translocation of assimilates is a fundamental process involving carbon and water balance affecting source/sink relationships. Diurnal patterns of CO 2 exchange, translocation (carbon export), and transpiration of an intact tomato source leaf were determined during 14 CO 2 steady-state labeling under different wavelengths at three pre-set photosynthetic rates. Daily patterns showed that photosynthesis and export were supported by all wavelengths of light tested including orange and green. Export in the light, under all wavelengths was always higher than that at night. Export in the light varied from 65-83% of the total daily carbon fixed, depending on light intensity. Photosynthesis and export were highly correlated under all wavelengths ( r = 0.90-0.96). Export as a percentage of photosynthesis (relative export) decreased as photosynthesis increased by increasing light intensity under all wavelengths. These data indicate an upper limit for export under all spectral conditions. Interestingly, only at the medium photosynthetic rate, relative export under the blue and the orange light-emitting diodes (LEDs) were higher than under white and red-white LEDs. Stomatal conductance, transpiration rates, and water-use-efficiency showed similar daily patterns under all wavelengths. Illuminating tomato leaves with different spectral quality resulted in similar carbon export rates, but stomatal conductance and transpiration rates varied due to wavelength specific control of stomatal function. Thus, we caution that the link between transpiration and C-export may be more complex than previously thought. In summary, these data indicate that orange and green LEDs, not simply the traditionally used red and blue LEDs, should be considered and tested when designing lighting systems for optimizing source leaf strength during plant production in controlled environment systems. In addition, knowledge related to the interplay between water and C-movement within a plant and how they are affected by environmental stimuli, is needed to develop a better understanding of source/sink relationships.

Effects of Light Quality and Intensity on Diurnal Patterns and Rates of Photo-Assimilate Translocation and Transpiration in Tomato Leaves

PubMed Central

Lanoue, Jason; Leonardos, Evangelos D.; Grodzinski, Bernard

2018-01-01

Translocation of assimilates is a fundamental process involving carbon and water balance affecting source/sink relationships. Diurnal patterns of CO2 exchange, translocation (carbon export), and transpiration of an intact tomato source leaf were determined during 14CO2 steady-state labeling under different wavelengths at three pre-set photosynthetic rates. Daily patterns showed that photosynthesis and export were supported by all wavelengths of light tested including orange and green. Export in the light, under all wavelengths was always higher than that at night. Export in the light varied from 65–83% of the total daily carbon fixed, depending on light intensity. Photosynthesis and export were highly correlated under all wavelengths (r = 0.90–0.96). Export as a percentage of photosynthesis (relative export) decreased as photosynthesis increased by increasing light intensity under all wavelengths. These data indicate an upper limit for export under all spectral conditions. Interestingly, only at the medium photosynthetic rate, relative export under the blue and the orange light-emitting diodes (LEDs) were higher than under white and red-white LEDs. Stomatal conductance, transpiration rates, and water-use-efficiency showed similar daily patterns under all wavelengths. Illuminating tomato leaves with different spectral quality resulted in similar carbon export rates, but stomatal conductance and transpiration rates varied due to wavelength specific control of stomatal function. Thus, we caution that the link between transpiration and C-export may be more complex than previously thought. In summary, these data indicate that orange and green LEDs, not simply the traditionally used red and blue LEDs, should be considered and tested when designing lighting systems for optimizing source leaf strength during plant production in controlled environment systems. In addition, knowledge related to the interplay between water and C-movement within a plant and how they are affected by environmental stimuli, is needed to develop a better understanding of source/sink relationships. PMID:29915612

The distribution and amount of carbon in the largest peatland complex in Amazonia

NASA Astrophysics Data System (ADS)

Draper, Frederick C.; Roucoux, Katherine H.; Lawson, Ian T.; Mitchard, Edward T. A.; Honorio Coronado, Euridice N.; Lähteenoja, Outi; Torres Montenegro, Luis; Valderrama Sandoval, Elvis; Zaráte, Ricardo; Baker, Timothy R.

2014-12-01

Peatlands in Amazonian Peru are known to store large quantities of carbon, but there is high uncertainty in the spatial extent and total carbon stocks of these ecosystems. Here, we use a multi-sensor (Landsat, ALOS PALSAR and SRTM) remote sensing approach, together with field data including 24 forest census plots and 218 peat thickness measurements, to map the distribution of peatland vegetation types and calculate the combined above- and below-ground carbon stock of peatland ecosystems in the Pastaza-Marañon foreland basin in Peru. We find that peatlands cover 35 600 ± 2133 km2 and contain 3.14 (0.44-8.15) Pg C. Variation in peat thickness and bulk density are the most important sources of uncertainty in these values. One particular ecosystem type, peatland pole forest, is found to be the most carbon-dense ecosystem yet identified in Amazonia (1391 ± 710 Mg C ha-1). The novel approach of combining optical and radar remote sensing with above- and below-ground carbon inventories is recommended for developing regional carbon estimates for tropical peatlands globally. Finally, we suggest that Amazonian peatlands should be a priority for research and conservation before the developing regional infrastructure causes an acceleration in the exploitation and degradation of these ecosystems.

Abundant carbon in the mantle beneath Hawai`i

NASA Astrophysics Data System (ADS)

Anderson, Kyle R.; Poland, Michael P.

2017-09-01

Estimates of carbon concentrations in Earth’s mantle vary over more than an order of magnitude, hindering our ability to understand mantle structure and mineralogy, partial melting, and the carbon cycle. CO2 concentrations in mantle-derived magmas supplying hotspot ocean island volcanoes yield our most direct constraints on mantle carbon, but are extensively modified by degassing during ascent. Here we show that undegassed magmatic and mantle carbon concentrations may be estimated in a Bayesian framework using diverse geologic information at an ocean island volcano. Our CO2 concentration estimates do not rely upon complex degassing models, geochemical tracer elements, assumed magma supply rates, or rare undegassed rock samples. Rather, we couple volcanic CO2 emission rates with probabilistic magma supply rates, which are obtained indirectly from magma storage and eruption rates. We estimate that the CO2 content of mantle-derived magma supplying Hawai`i’s active volcanoes is 0.97-0.19+0.25 wt%--roughly 40% higher than previously believed--and is supplied from a mantle source region with a carbon concentration of 263-62+81 ppm. Our results suggest that mantle plumes and ocean island basalts are carbon-rich. Our data also shed light on helium isotope abundances, CO2/Nb ratios, and may imply higher CO2 emission rates from ocean island volcanoes.

Synthesis of Amino Acid Precursors with Organic Solids in Planetesimals with Liquid Water

NASA Technical Reports Server (NTRS)

Kebukawa, Y; Misawa, S.; Matsukuma, J.; Chan, Q. H. S.; Kobayashi, J.; Tachibana, S.; Zolensky, M. E.

2017-01-01

Amino acids are important ingredients of life that would have been delivered to Earth by extraterrestrial sources, e.g., comets and meteorites. Amino acids are found in aqueously altered carbonaceous chondrites in good part in the form of precursors that release amino acids after acid hydrolysis. Meanwhile, most of the organic carbon (greater than 70 weight %) in carbonaceous chondrites exists in the form of solvent insoluble organic matter (IOM) with complex macromolecular structures. Complex macromolecular organic matter can be produced by either photolysis of interstellar ices or aqueous chemistry in planetesimals. We focused on the synthesis of amino acids during aqueous alteration, and demonstrated one-pot synthesis of a complex suite of amino acids simultaneously with IOM via hydrothermal experiments simulating the aqueous processing

Phosphine/Sulfoxide-Supported Carbon(0) Complex.

PubMed

Lozano González, Mariana; Bousquet, Laura; Hameury, Sophie; Alvarez Toledano, Cecilio; Saffon-Merceron, Nathalie; Branchadell, Vicenç; Maerten, Eddy; Baceiredo, Antoine

2018-02-21

A new carbon(0) complex 2 with two different L ligands, a phosphine and a sulfoxide, was synthesized and fully characterized. This new type of carbone exhibits excellent coordination ability, in contrast to the related phosphine/sulfide-supported carbon(0) complexes. Several organometallic complexes were isolated and, of special interest, the ν av (CO) value of Rh I -dicarbonyl complex indicates that 2 has a donor capability superior to classical NHCs. © 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

The Effects of Permafrost Thaw on Organic Matter Quality and Availability Along a Hill Slope in Northeastern Siberia

NASA Astrophysics Data System (ADS)

Connolly, C. T.; Spawn, S.; Ludwig, S.; Schade, J. D.; Natali, S.

2014-12-01

Climate warming and permafrost thaw in northeastern Siberia are expected to change the quantity and quality of organic matter (OM) transported through watersheds, releasing previously frozen carbon (C) to biologically available pool. Hill slopes have shown to influence the distribution of OM, resulting in a downhill accumulation of available C and nutrients relative to uphill. Here we examine how future permafrost thaw will change OM quality and availability along a hill slope in a larch-dominated watershed. We collected soils from the thawed organic and mineral layers, and 1m deep permafrost cores for dissolved organic C (DOC) and total dissolved N (TDN), C composition from measures of colored dissolved organic matter (CDOM), DOC lability from biodegradable DOC (BDOC) incubations, C and nutrient availability from extracellular-enzyme assays (EEA's), and microbial respiration from aerobic soil incubations. Here we show that organic soils (O), in comparison to mineral soils (M) and permafrost (P) are the most abundant source of C (avg O DOC: 51.6mg/L), exhibiting low molecular complexity (avg O SUVA254: 4.05) and high quality. Evidence suggests permafrost OM may be an equally abundant, and more labile source of C than mineral soils (highest P DOC: 16.1 mg/L, lowest P SUVA254: 6.32; median M DOC: 18.5 mg/L, median M SUVA254: 24.0). Furthermore, we demonstrate that there may be a positive relationship in the rate of C mineralization and distance downhill, showing 15-30% greater CO2 production/gC downhill relative to uphill. Evidence also supports a similar relationship in permafrost DOC content and molecular complexity, showing more DOC of a lower complexity further downhill. This indicates DOC transport may have been occurring through the active layer and downhill during ice-rich permafrost formation, and may supply a labile source of carbon to lowland areas and adjacent stream networks upon thaw.

Residence times of groundwater and nitrate transport in coastal aquifer systems: Daweijia area, northeastern China.

PubMed

Han, Dongmei; Cao, Guoliang; McCallum, James; Song, Xianfang

2015-12-15

Groundwater within the coastal aquifer systems of the Daweijia area in northeastern China is characterized by a large of variations (33-521mg/L) in NO3(-) concentrations. Elevated nitrate concentrations, in addition to seawater intrusion in the Daweijia well field, both attributable to anthropogenic activities, may impact future water-management practices. Chemical and stable isotopic (δ(18)O, δ(2)H) analysis, (3)H and CFCs methods were applied to provide a better understanding of the relationship between the distribution of groundwater mean residence time (MRT) and nitrate transport, and to identify sources of nitrate concentrations in the complex coastal aquifer systems. There is a relatively narrow range of isotopic composition (ranging from -8.5 to -7.0‰) in most groundwater. Generally higher tritium contents observed in the wet season relative to the dry season may result from rapid groundwater circulation in response to the rainfall through the preferential flow paths. In the well field, the relatively increased nitrate concentrations of groundwater, accompanied by the higher tritium contents in the wet season, indicate the nitrate pollution can be attributed to domestic wastes. The binary exponential and piston-flow mixing model (BEP) yielded feasible age distributions based on the conceptual model. The good inverse relationship between groundwater MRTs (92-467years) and the NO3(-) concentrations in the shallow Quaternary aquifers indicates that elevated nitrate concentrations are attributable to more recent recharge for shallow groundwater. However, there is no significant relationship between the MRTs (8-411years) and the NO3(-) concentrations existing in the carbonate aquifer system, due to the complex hydrogeological conditions, groundwater age distributions and the range of contaminant source areas. Nitrate in the groundwater system without denitrification effects could accumulate and be transported for tens of years, through the complex carbonate aquifer matrix and the successive inputs of nitrogen from various sources. Copyright © 2015 Elsevier B.V. All rights reserved.

Carbon stabilization mechanisms in Ecuadorian Andosols

NASA Astrophysics Data System (ADS)

Jansen, Boris; Tonneijck, Femke; Nierop, Klaas; Verstraten, Koos

2010-05-01

Volcanic ash soils contain very large stocks of soil organic matter (SOM) per unit area. Consequently, they constitute potential sources or sinks of the greenhouse gas CO2. Whether soils become a net carbon source or sink upon climate and/or land-use change depends on the stability of SOM against decomposition, which is influenced by stabilisation mechanisms in the soil. To clarify the role of chemical and physical carbon stabilisation mechanisms in volcanic ash soils, we applied selective extraction techniques, performed X-ray diffraction analyses of the clay fraction and estimated pore size distributions at various depths in the top- and subsoil along an altitudinal transect in the Ecuadorian Andes. The transect encompassed a sequence of paleosols under natural upper montane forest as well as grassland (páramo). From several soils SOM was further characterized at a molecular level using GC/MS analyses of extractable lipids and Pyrolysis-GC/MS analyses of bulk organic matter. Our results show that organic carbon stocks under forest as well as páramo vegetation roughly doubled global averages for volcanic ash soils. The carbon stabilization mechanisms involved are: i) direct stabilization of SOM in organo-metallic (Al-OM) complexes; ii) indirect protection of SOM through low soil pH and toxic levels of Al; and iii) physical protection of SOM due to a very high microporosity. When examining the organic carbon at a molecular level, interestingly we found extensive degradation of lignin while extractable lipids were preferentially preserved, hinting at fungal degradation in the face of inhibited bacterial decomposition. Both vegetation types contributed to soil acidification, thus increasing SOM accumulation and inducing positive feedbacks. Most types of land-use change will result in immediate and substantial carbon loss to the atmosphere. Our results stress the urgent need to protect the Tropical Andes 'hotspot' from destructive land-use change, not only for the sake of preserving its outstanding biodiversity but also for its function as a carbon sink.

Evaluation of simulated biospheric carbon dioxide fluxes and atmospheric concentrations using global in situ observations

NASA Astrophysics Data System (ADS)

Philip, S.; Johnson, M. S.; Potter, C. S.; Genovese, V. B.

2016-12-01

Atmospheric mixing ratios of carbon dioxide (CO2) are largely controlled by anthropogenic emission sources and biospheric sources/sinks. Global biospheric fluxes of CO2 are controlled by complex processes facilitating the exchange of carbon between terrestrial ecosystems and the atmosphere. These processes which play a key role in these terrestrial ecosystem-atmosphere carbon exchanges are currently not fully understood, resulting in large uncertainties in the quantification of biospheric CO2 fluxes. Current models with these inherent deficiencies have difficulties simulating the global carbon cycle with high accuracy. We are developing a new modeling platform, GEOS-Chem-CASA by integrating the year-specific NASA-CASA (National Aeronautics and Space Administration - Carnegie Ames Stanford Approach) biosphere model with the GEOS-Chem (Goddard Earth Observation System-Chemistry) chemical transport model to improve the simulation of atmosphere-terrestrial ecosystem carbon exchange. We use NASA-CASA to explicitly represent the exchange of CO2 between terrestrial ecosystem and atmosphere by replacing the baseline GEOS-Chem land net CO2 flux and forest biomass burning CO2 emissions. We will present the estimation and evaluation of these "bottom-up" land CO2 fluxes, simulated atmospheric mixing ratios, and forest disturbance changes over the last decade. In addition, we will present our initial comparison of atmospheric column-mean dry air mole fraction of CO2 predicted by the model and those retrieved from NASA's OCO-2 (Orbiting Carbon Observatory-2) satellite instrument and model-predicted surface CO2 mixing ratios with global in situ observations. This evaluation is the first step necessary for our future work planned to constrain the estimates of biospheric carbon fluxes through "top-down" inverse modeling, which will improve our understanding of the processes controlling atmosphere-terrestrial ecosystem greenhouse gas exchanges, especially over regions which lack in situ observations.

B33C-0612: Evaluation of Simulated Biospheric Carbon Dioxide Fluxes and Atmospheric Concentrations Using Global in Situ Observations

NASA Technical Reports Server (NTRS)

Philip, Sajeev; Johnson, Matthew S.; Potter, Christopher S.; Genovese, Vanessa

2016-01-01

Atmospheric mixing ratios of carbon dioxide (CO2) are largely controlled by anthropogenic emission sources and biospheric sources/sinks. Global biospheric fluxes of CO2 are controlled by complex processes facilitating the exchange of carbon between terrestrial ecosystems and the atmosphere. These processes which play a key role in these terrestrial ecosystem-atmosphere carbon exchanges are currently not fully understood, resulting in large uncertainties in the quantification of biospheric CO2 fluxes. Current models with these inherent deficiencies have difficulties simulating the global carbon cycle with high accuracy. We are developing a new modeling platform, GEOS-Chem-CASA by integrating the year-specific NASA-CASA (National Aeronautics and Space Administration - Carnegie Ames Stanford Approach) biosphere model with the GEOS-Chem (Goddard Earth Observation System-Chemistry) chemical transport model to improve the simulation of atmosphere-terrestrial ecosystem carbon exchange. We use NASA-CASA to explicitly represent the exchange of CO2 between terrestrial ecosystem and atmosphere by replacing the baseline GEOS-Chem land net CO2 flux and forest biomass burning CO2 emissions. We will present the estimation and evaluation of these "bottom-up" land CO2 fluxes, simulated atmospheric mixing ratios, and forest disturbance changes over the last decade. In addition, we will present our initial comparison of atmospheric column-mean dry air mole fraction of CO2 predicted by the model and those retrieved from NASA's OCO-2 (Orbiting Carbon Observatory-2) satellite instrument and model-predicted surface CO2 mixing ratios with global in situ observations. This evaluation is the first step necessary for our future work planned to constrain the estimates of biospheric carbon fluxes through "top-down" inverse modeling, which will improve our understanding of the processes controlling atmosphere-terrestrial ecosystem greenhouse gas exchanges, especially over regions which lack in situ observations.

Geochemistry and hydrology of a calcareous fen within the Savage Fen wetlands complex, Minnesota, USA

USGS Publications Warehouse

Komor, S.C.

1994-01-01

Savage Fen is a wetlands complex at the base of north-facing bluffs in the Minnesota River Valley. The complex includes 27.8 hectares of calcareous fen that host rare calciphile plants whose populations are declining in Minnesota. Water and sediment compositions in the calcareous fen were studied to gain a better understanding of the hydrologie System that sustains the rare vegetation. Groundwater in the fen is a calcium-magnesium-bicarbonate type with circumneutral pH values. The groundwater composition is the resuit of interactions among water, dissolved and gaseous carbon species, carbonates, and ion exchangers. Shallow groundwater is distinguished from deep groundwater by smaller concentrations of chloride, sulfate, magnesium, and sodium, and larger concentrations of calcium, bicarbonate, hydrogen sulfide, and ammonium. Magnesian calcite is the prevalent carbonate in unconsolidated sedimentary fill beneath the fen and is an important source and sink for dissolved calcium, magnesium, and inorganic carbon. Calcite concentrations just below the water table are small because aerobic and anaerobic oxidation of organic matter increase the partial pressure of carbon dioxide (PCO2), decrease pH, and cause calcite to dissolve. Thick calcite accumulations just above the water table, in the root zone of calciphile plants, result from water table fluctuations and attendant changes in PCO2. Groundwater beneath Savage Fen recharges in lakes and ponds south of the fen and upwells to the surface within the fen. Water at the water table is a mixture of upwelling groundwater and water near the surface that flows downslope from higher elevations in the fen. Changes in oxygen and hydrogen isotope compositions of shallow groundwater indicate that the proportion of upwelling groundwater in shallow groundwater decreases downgradient in the calcareous fen. Encroachment of reed grasses into the calcareous fen may reflect human-caused disturbances in the recharge area.

Bacterially mediated diagenetic origin for chert-hosted manganese deposits in the Franciscan Complex, California Coast Ranges

NASA Astrophysics Data System (ADS)

Hein, James R.; Koski, Randolph A.

1987-08-01

Numerous manganese deposits in the Franciscan Complex, California, occur as conformable lenses within bedded radiolarian chert-argillite sequences that are, in turn, intercalated within thicker sections of sandstone and shale. The field relations, composition, and petro-graphic and isotopic characteristics indicate that the manganese was concentrated by diagenetic reconstitution of siliceous and hemipelagic sediment during burial. The ore lenses are Mn-rich and Fe-poor assemblages consisting largely of rhodochrosite, manganese silicates, opal-CT (disordered cristobalite-tridymite), and quartz. Highly negative δ13C values for the carbonate carbon in rhodochrosite indicate that CO2 likely originated from oxidation of methane; less negative values result from mixing of methanogenic carbon and CO2 derived from bacterial degradation of organic matter. The δ18O values for the carbonate of rhodochrosite indicate temperatures of formation between 12 and 100 °C. The oxidation of methane prior to carbonate precipitation may have used the minor (0.4% 0.5%) Mn and Fe oxyhydroxides and oxides deposited with the sediment. The mobilization of manganese from biogenic and terrigenous sources in the sediment column into discrete horizons and the fractioriation of manganese from iron reflect the presence of oxidation-reduction boundaries and gradients in the sediment column. Fluids derived from compaction and silica-dehydration reactions in the transformation of opal-A (X-ray amorphous biogenic silica) to quartz were involved in transportation of principal components. Sedimentary and geochemical attributes suggest that the deposits formed in a deep-water environment in a zone of oceanic upwelling near a continental margin.

Recent developments of ion sources for life-science studies at the Heavy Ion Medical Accelerator in Chiba (invited)

NASA Astrophysics Data System (ADS)

Kitagawa, A.; Drentje, A. G.; Fujita, T.; Muramatsu, M.; Fukushima, K.; Shiraishi, N.; Suzuki, T.; Takahashi, K.; Takasugi, W.; Biri, S.; Rácz, R.; Kato, Y.; Uchida, T.; Yoshida, Y.

2016-02-01

With about 1000-h of relativistic high-energy ion beams provided by Heavy Ion Medical Accelerator in Chiba, about 70 users are performing various biology experiments every year. A rich variety of ion species from hydrogen to xenon ions with a dose rate of several Gy/min is available. Carbon, iron, silicon, helium, neon, argon, hydrogen, and oxygen ions were utilized between 2012 and 2014. Presently, three electron cyclotron resonance ion sources (ECRISs) and one Penning ion source are available. Especially, the two frequency heating techniques have improved the performance of an 18 GHz ECRIS. The results have satisfied most requirements for life-science studies. In addition, this improved performance has realized a feasible solution for similar biology experiments with a hospital-specified accelerator complex.

Tight-Binding Approach to Computational Materials Science, Symposium Held December 1-3, 1997, Boston, Massachusetts, USA. Volume 491

DTIC Science & Technology

1998-01-01

to their large unit size and to experimental difficulties in determining geometries of carbon-based complex materials because of the weak X - ray ...qualitative relationship between the calculated local density of states and the experimental X - ray pho- toelectron spectra (XPS) and the Bremsstrahlung...from interaction schemes and allows complete data sets from different sources (neutron or X - ray diffraction, chemical constraints) to be fitted. In

Evaluation of Pyrolysis Oil as Carbon Source for Fungal Fermentation

PubMed Central

Dörsam, Stefan; Kirchhoff, Jennifer; Bigalke, Michael; Dahmen, Nicolaus; Syldatk, Christoph; Ochsenreither, Katrin

2016-01-01

Pyrolysis oil, a complex mixture of several organic compounds, produced during flash pyrolysis of organic lignocellulosic material was evaluated for its suitability as alternative carbon source for fungal growth and fermentation processes. Therefore several fungi from all phyla were screened for their tolerance toward pyrolysis oil. Additionally Aspergillus oryzae and Rhizopus delemar, both established organic acid producers, were chosen as model organisms to investigate the suitability of pyrolysis oil as carbon source in fungal production processes. It was observed that A. oryzae tolerates pyrolysis oil concentrations between 1 and 2% depending on growth phase or stationary production phase, respectively. To investigate possible reasons for the low tolerance level, eleven substances from pyrolysis oil including aldehydes, organic acids, small organic compounds and phenolic substances were selected and maximum concentrations still allowing growth and organic acid production were determined. Furthermore, effects of substances to malic acid production were analyzed and compounds were categorized regarding their properties in three groups of toxicity. To validate the results, further tests were also performed with R. delemar. For the first time it could be shown that small amounts of phenolic substances are beneficial for organic acid production and A. oryzae might be able to degrade isoeugenol. Regarding pyrolysis oil toxicity, 2-cyclopenten-1-on was identified as the most toxic compound for filamentous fungi; a substance never described for anti-fungal or any other toxic properties before and possibly responsible for the low fungal tolerance levels toward pyrolysis oil. PMID:28066378

Preparation of metal-resistant immobilized sulfate reducing bacteria beads for acid mine drainage treatment.

PubMed

Zhang, Mingliang; Wang, Haixia; Han, Xuemei

2016-07-01

Novel immobilized sulfate-reducing bacteria (SRB) beads were prepared for the treatment of synthetic acid mine drainage (AMD) containing high concentrations of Fe, Cu, Cd and Zn using up-flow anaerobic packed-bed bioreactor. The tolerance of immobilized SRB beads to heavy metals was significantly enhanced compared with that of suspended SRB. High removal efficiencies of sulfate (61-88%) and heavy metals (>99.9%) as well as slightly alkaline effluent pH (7.3-7.8) were achieved when the bioreactor was fed with acidic influent (pH 2.7) containing high concentrations of multiple metals (Fe 469 mg/L, Cu 88 mg/L, Cd 92 mg/L and Zn 128 mg/L), which showed that the bioreactor filled with immobilized SRB beads had tolerance to AMD containing high concentrations of heavy metals. Partially decomposed maize straw was a carbon source and stabilizing agent in the initial phase of bioreactor operation but later had to be supplemented by a soluble carbon source such as sodium lactate. The microbial community in the bioreactor was characterized by denaturing gradient gel electrophoresis (DGGE) and sequencing of partial 16S rDNA genes. Synergistic interaction between SRB (Desulfovibrio desulfuricans) and co-existing fermentative bacteria could be the key factor for the utilization of complex organic substrate (maize straw) as carbon and nutrients source for sulfate reduction. Copyright © 2016 Elsevier Ltd. All rights reserved.

Stable isotopic variation in tropical forest plants for applications in primatology.

PubMed

Blumenthal, Scott A; Rothman, Jessica M; Chritz, Kendra L; Cerling, Thure E

2016-10-01

Stable isotope analysis is a promising tool for investigating primate ecology although nuanced ecological applications remain challenging, in part due to the complex nature of isotopic variability in plant-animal systems. The aim of this study is to investigate sources of carbon and nitrogen isotopic variation at the base of primate food webs that reflect aspects of primate ecology. The majority of primates inhabit tropical forest ecosystems, which are dominated by C3 vegetation. We used stable isotope ratios in plants from Kibale National Park, Uganda, a well-studied closed-canopy tropical forest, to investigate sources of isotopic variation among C3 plants related to canopy stratification, leaf age, and plant part. Unpredictably, our results demonstrate that vertical stratification within the canopy does not explain carbon or nitrogen isotopic variation in leaves. Leaf age can be a significant source of isotopic variation, although the direction and magnitude of this difference is not consistent across tree species. Some plant parts are clearly differentiated in carbon and nitrogen isotopic composition, particularly leaves compared to non-photosynthetic parts such as reproductive parts and woody stem parts. Overall, variation in the isotopic composition of floral communities, plant species, and plant parts demonstrates that stable isotope studies must include analysis of local plant species and parts consumed by the primates under study from within the study area. Am. J. Primatol. 78:1041-1054, 2016. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

Monumental heritage exposure to urban black carbon pollution

NASA Astrophysics Data System (ADS)

Patrón, D.; Lyamani, H.; Titos, G.; Casquero-Vera, J. A.; Cardell, C.; Močnik, G.; Alados-Arboledas, L.; Olmo, F. J.

2017-12-01

In this study, aerosol light-absorption measurements obtained at three sites during a winter campaign were used to analyse and identify the major sources of Black Carbon (BC) particles in and around the Alhambra monument, a UNESCO World Heritage Site that receives over 2 million visitors per year. The Conditional Bivariate Probability Function and the Aethalometer model were employed to identify the main sources of BC particles and to estimate the contributions of biomass burning and fossil fuel emissions to the total Equivalent Black Carbon (EBC) concentrations over the monumental complex. Unexpected high levels of EBC were found at the Alhambra, comparable to those measured in relatively polluted European urban areas during winter. EBC concentrations above 3.0 μg/m3, which are associated with unacceptable levels of soiling and negative public reactions, were observed at Alhambra monument on 13 days from 12 October 2015 to 29 February 2016, which can pose a risk to its long-term conservation and may cause negative social and economic impacts. It was found that road traffic emissions from the nearby urban area and access road to the Alhambra were the main sources of BC particles over the monument. However, biomass burning emissions were found to have very small impact on EBC concentrations at the Alhambra. The highest EBC concentrations were observed during an extended stagnant episode associated with persistent high-pressure systems, reflecting the large impact that can have these synoptic conditions on BC over the Alhambra.

Evaluation of Pyrolysis Oil as Carbon Source for Fungal Fermentation.

PubMed

Dörsam, Stefan; Kirchhoff, Jennifer; Bigalke, Michael; Dahmen, Nicolaus; Syldatk, Christoph; Ochsenreither, Katrin

2016-01-01

Pyrolysis oil, a complex mixture of several organic compounds, produced during flash pyrolysis of organic lignocellulosic material was evaluated for its suitability as alternative carbon source for fungal growth and fermentation processes. Therefore several fungi from all phyla were screened for their tolerance toward pyrolysis oil. Additionally Aspergillus oryzae and Rhizopus delemar , both established organic acid producers, were chosen as model organisms to investigate the suitability of pyrolysis oil as carbon source in fungal production processes. It was observed that A. oryzae tolerates pyrolysis oil concentrations between 1 and 2% depending on growth phase or stationary production phase, respectively. To investigate possible reasons for the low tolerance level, eleven substances from pyrolysis oil including aldehydes, organic acids, small organic compounds and phenolic substances were selected and maximum concentrations still allowing growth and organic acid production were determined. Furthermore, effects of substances to malic acid production were analyzed and compounds were categorized regarding their properties in three groups of toxicity. To validate the results, further tests were also performed with R. delemar . For the first time it could be shown that small amounts of phenolic substances are beneficial for organic acid production and A. oryzae might be able to degrade isoeugenol. Regarding pyrolysis oil toxicity, 2-cyclopenten-1-on was identified as the most toxic compound for filamentous fungi; a substance never described for anti-fungal or any other toxic properties before and possibly responsible for the low fungal tolerance levels toward pyrolysis oil.

Ins and outs of a complex subduction zone: C cycling along the Sunda margin, Indonesia

NASA Astrophysics Data System (ADS)

House, B. M.; Bebout, G. E.; Hilton, D. R.

2016-12-01

Subduction of C in marine sediments and altered oceanic crust is the main mechanism for reintroducing C into the deep earth and removing it from communication with the ocean and atmosphere. However, detailed studies of individual margins - which are necessary to understanding global C cycling - are sparse. The thick, C-rich sediment column along the Sunda margin, Indonesia makes understanding this margin crucial for constructing global C cycling budgets. Furthermore it is an ideal location to compare cycling of organic and carbonate C due to the abrupt transition from carbonate-dominated sediments in the SE to sediments rich in organic C from the Nicobar Fan in the NW. To quantify and characterize C available for subduction, we analyzed samples from DSDP 211, 260, 261, and ODP 765, all outboard of the trench, as well as piston and gravity cores of locally-sourced terrigenous trench fill. We created a 3-D model of overall sediment thickness and the thicknesses of geochemically distinct sedimentary units using archived and published seismic profiles to infer unit thicknesses at and along the 2500 km trench. This model vastly improves estimates of the C available for subduction and also reveals that the Christmas Island Seamount Province serves as a barrier to turbidite flow, dividing the regions of the trench dominated by organic and inorganic C input. Incorporating best estimates for the depth of the decollement indicates that the terrigenous trench fill, with up to 1.5 wt % organic C, is entirely accreted as is the thick section of carbonate-rich turbidites that dominate the southeastern portion of the margin (DSDP 261/ODP 765). Organic C accounts for most of the C bypassing the accretionary complex NW of the Christmas Island Seamount Province, and C inputs to the trench are lower there than to the SE where carbonate units near the base of the sediment column are the dominant C source. Release of C from altered oceanic crust - a C reservoir up to 10 times greater than sediments - can resolve the apparent conflict between the carbonate signal in volcanic emissions and scarcity of carbonate in subducting sediments along the NW of the arc. This study lays the foundation for refined methods of comparing subduction inputs and arc outputs of C at convergent margins.

Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes

PubMed Central

He, Shaomei; Stevens, Sarah L. R.; Chan, Leong-Keat; Bertilsson, Stefan; Glavina del Rio, Tijana; Tringe, Susannah G.; Malmstrom, Rex R.

2017-01-01

ABSTRACT Microbes are critical in carbon and nutrient cycling in freshwater ecosystems. Members of the Verrucomicrobia are ubiquitous in such systems, and yet their roles and ecophysiology are not well understood. In this study, we recovered 19 Verrucomicrobia draft genomes by sequencing 184 time-series metagenomes from a eutrophic lake and a humic bog that differ in carbon source and nutrient availabilities. These genomes span four of the seven previously defined Verrucomicrobia subdivisions and greatly expand knowledge of the genomic diversity of freshwater Verrucomicrobia. Genome analysis revealed their potential role as (poly)saccharide degraders in freshwater, uncovered interesting genomic features for this lifestyle, and suggested their adaptation to nutrient availabilities in their environments. Verrucomicrobia populations differ significantly between the two lakes in glycoside hydrolase gene abundance and functional profiles, reflecting the autochthonous and terrestrially derived allochthonous carbon sources of the two ecosystems, respectively. Interestingly, a number of genomes recovered from the bog contained gene clusters that potentially encode a novel porin-multiheme cytochrome c complex and might be involved in extracellular electron transfer in the anoxic humus-rich environment. Notably, most epilimnion genomes have large numbers of so-called “Planctomycete-specific” cytochrome c-encoding genes, which exhibited distribution patterns nearly opposite to those seen with glycoside hydrolase genes, probably associated with the different levels of environmental oxygen availability and carbohydrate complexity between lakes/layers. Overall, the recovered genomes represent a major step toward understanding the role, ecophysiology, and distribution of Verrucomicrobia in freshwater. IMPORTANCE Freshwater Verrucomicrobia spp. are cosmopolitan in lakes and rivers, and yet their roles and ecophysiology are not well understood, as cultured freshwater Verrucomicrobia spp. are restricted to one subdivision of this phylum. Here, we greatly expanded the known genomic diversity of this freshwater lineage by recovering 19 Verrucomicrobia draft genomes from 184 metagenomes collected from a eutrophic lake and a humic bog across multiple years. Most of these genomes represent the first freshwater representatives of several Verrucomicrobia subdivisions. Genomic analysis revealed Verrucomicrobia to be potential (poly)saccharide degraders and suggested their adaptation to carbon sources of different origins in the two contrasting ecosystems. We identified putative extracellular electron transfer genes and so-called “Planctomycete-specific” cytochrome c-encoding genes and identified their distinct distribution patterns between the lakes/layers. Overall, our analysis greatly advances the understanding of the function, ecophysiology, and distribution of freshwater Verrucomicrobia, while highlighting their potential role in freshwater carbon cycling. PMID:28959738

Comparing (semi-) analytic solutions used to model the impact of deep carbon injection on the displacement and pressurization of the resident brine

NASA Astrophysics Data System (ADS)

Bandilla, K.; Kraemer, S. R.

2009-12-01

Injection of carbon dioxide into deep saline formations is seen as one possible technology for mitigating carbon emissions from utilities. The safety of the sequestered carbon dioxide is the focus of many studies with leakage through faults or abandoned wells as some of the main failure mechanisms. The focus of this study is on the displacement of resident brine and the resulting changes in pressure due to the injection of large volumes of super-critical phase carbon dioxide into the subsurface. The movement of brine becomes important if it travels vertically and reaches an existing or potential underground source of drinking water where an increase in salt content may threaten the viability of the drinking water source. Vertical displacement of brine may occur slowly through confining layers, or more rapidly through faults and abandoned wells. This presentation compares several (semi-) analytic solutions to determine their applicability to the problem of brine pressurization and displacement. The goal is to find ranges of formation parameters (e.g., formation seal conductivity, distance to lateral boundary, … ) for which simplifying assumption are justifiable Each simplification in the conceptual model (e.g., neglecting the lateral boundary turns a bounded domain into an infinite one) leads to a simpler (semi-) analytic solution. The process involves a solution hierarchy from the most complex solution down to the basic Theis solution. A software tool-kit implementing several (semi-) analytic solutions was developed for this study to facilitate the comparison of the solutions.

Hydrological controls on riverine carbon export in a seasonally wet tropical catchment

NASA Astrophysics Data System (ADS)

Duvert, C.; Hutley, L. B.; Bossa, M.; Bird, M. I.; Munksgaard, N.; Wynn, J. G.; Setterfield, S. A.; Northwood, M.

2017-12-01

Understanding the movement of carbon (C) through the landscape is critical for accurate C accounting. Failure to account for the transport of terrestrially-derived C to aquifers and streams can result in a considerable over-estimation of the C sequestration by the biosphere. Here we report on the magnitude of C export via shallow groundwater and adjacent streams in a savanna-covered seasonally wet tropical catchment of northern Australia. Riverine fluxes of carbon dioxide (CO2), dissolved inorganic carbon (DIC) and dissolved organic carbon (DOC) were measured at a high resolution over a full year to gain insight into the drivers of C export in this system. Water and C stable isotopes were also measured in order to elucidate water sources and dominant flow pathways. Our results suggest that CO2 evasion was the major process contributing to riverine C loss in the catchment (111 kg C ha-1 yr-1). The downstream export of C was dominated by DOC (78 kg C ha-1 yr-1), while DIC accounted for 39 kg C ha-1 yr-1 of the annual export. The bulk of annual DOC export was flushed out during the very first high-flow events, with export decreasing throughout the wet season to pre-flood levels. In contrast, the DIC flux was more important during flow recession, upon activation of deeper flowpaths carrying geologically-derived C. Shallow groundwater measured in boreholes was supersaturated with CO2 (15,000 < pCO2 < 55,000 ppm), whereas in-stream concentrations were an order of magnitude lower, suggesting substantial outgassing of CO2. Our findings outline the key role of point-source groundwater discharge in riverine CO2 evasion, with C largely sourced from seasonally productive savanna vegetation. Given the complexity of this pathway and the magnitude of this flux, new methods are needed to more precisely quantify CO2 evasion.

Polyhydroxyalkanoates (PHA) production using wastewater as carbon source and activated sludge as microorganisms.

PubMed

Yan, S; Tyagi, R D; Surampalli, R Y

2006-01-01

Activated sludge from different full-scale wastewater treatment plants (municipal, pulp and paper industry, starch manufacturing and cheese manufacturing wastewaters) was used as a source of microorganisms to produce biodegradable plastics in shake flask experiments. Acetate, glucose and different wastewaters were used as carbon sources. Pulp and paper wastewater sludge was found to accumulate maximum concentration (43% of dry weight of suspended solids) of polyhydroxy alkanoates (PHA) with acetate as carbon source. Among the different wastewaters tested as a source of carbon, pulp and paper industry and starch industry wastewaters were found to be the best source of carbon while employing pulp and paper activated sludge for maximum accumulation of PHA. High concentration of volatile fatty acids in these wastewaters was the probable reason.

Trophic state, eutrophication and nutrient criteria in streams.

PubMed

Dodds, Walter K

2007-12-01

Trophic state is the property of energy availability to the food web and defines the foundation of community integrity and ecosystem function. Describing trophic state in streams requires a stoichiometric (nutrient ratio) approach because carbon input rates are linked to nitrogen and phosphorus supply rates. Light determines the source of carbon. Cross system analyses, small experiments and ecosystem level manipulations have recently advanced knowledge about these linkages, but not to the point of building complex predictive models that predict all effects of nutrient pollution. Species diversity could indicate the natural distribution of stream trophic status over evolutionary time scales. Delineation of factors that control trophic state and relationships with biological community properties allows determination of goals for management of stream biotic integrity.

Electrochemical process for the preparation of nitrogen fertilizers

DOEpatents

Jiang, Junhua; Aulich, Ted R; Ignatchenko, Alexey V

2015-04-14

Methods and apparatus for the preparation of nitrogen fertilizers including ammonium nitrate, urea, urea-ammonium nitrate, and/or ammonia are disclosed. Embodiments include (1) ammonium nitrate produced via the reduction of a nitrogen source at the cathode and the oxidation of a nitrogen source at the anode; (2) urea or its isomers produced via the simultaneous cathodic reduction of a carbon source and a nitrogen source: (3) ammonia produced via the reduction of nitrogen source at the cathode and the oxidation of a hydrogen source or a hydrogen equivalent such as carbon monoxide or a mixture of carbon monoxide and hydrogen at the anode; and (4) urea-ammonium nitrate produced via the simultaneous cathodic reduction of a carbon source and a nitrogen source, and anodic oxidation of a nitrogen source.

Decoding depositional sequences in carbonate systems: Concepts vs experience

NASA Astrophysics Data System (ADS)

Pomar, Luis; Haq, Bilal U.

2016-11-01

Efficacy of sequence stratigraphic concepts in siliciclastic systems has been proven by successful applications in both academia and the industry over the past four decades. However, experience has demonstrated repeatedly that the relatively simple advective transportational approach of these models is less than successful when applied to the more complex carbonate systems and can lead to erroneous interpretations. Instead, an approach that includes the use of the changes in the biotic components of carbonate deposits to infer the sea-level trajectory and thereby placing it in the proper sequence framework is deemed to be more meaningful. This is exemplified with several well-studied examples that illustrate the variety of ways in which the biotic components can build carbonate platforms, and how these have changed through the ages prompted by biological evolution. This extended review discusses carbonate production, source to sink transportation influenced by sea-level changes, surface waves, as well as the less understood and under-appreciated internal waves, and the resulting variety of platforms that can be built by the interaction of these factors, as well as the changing patterns of biotic components with time. Their effect on the carbonate reservoir is considerable, understanding of which is the ultimate objective of carbonate research for applications in the industry. Key elements in the carbonate environments that differ from the siliciclastic systems are: 1) intrabasinal conditions (nutrients, salinity, temperature, water energy, transparency) are important controls on carbonate production and therefore also control in-situ accommodation and how it may be filled; 2) depositional accommodation can be both physical (controlled by hydrodynamics) and ecological (in the building-up above the base level mode); 3) because carbonates are products of biological activity, their production modes have been changing with time as their biotic components have evolved; 4) seafloor morphology determines the size and efficiency of the carbonate factory; 5) several carbonate factories may coexist or alternate, in-phase, out-of-phase with or independently of the sea level changes. The complexity and interplay of all of these governing factors contribute to very diverse carbonate production styles and edifices. Consequently, sequence-stratigraphic interpretations in carbonates are more meaningful when seen through the lens of process-product relationships, rather than simply through bedding patterns and bounding surfaces characterization.

Measurement of carbon capture efficiency and stored carbon leakage

DOEpatents

Keeling, Ralph F.; Dubey, Manvendra K.

2013-01-29

Data representative of a measured carbon dioxide (CO.sub.2) concentration and of a measured oxygen (O.sub.2) concentration at a measurement location can be used to determine whether the measured carbon dioxide concentration at the measurement location is elevated relative to a baseline carbon dioxide concentration due to escape of carbon dioxide from a source associated with a carbon capture and storage process. Optionally, the data can be used to quantify a carbon dioxide concentration increase at the first location that is attributable to escape of carbon dioxide from the source and to calculate a rate of escape of carbon dioxide from the source by executing a model of gas-phase transport using at least the first carbon dioxide concentration increase. Related systems, methods, and articles of manufacture are also described.

Ozone-induced changes in natural organic matter (NOM) structure

USGS Publications Warehouse

Westerhoff, P.; Debroux, J.; Aiken, G.; Amy, G.

1999-01-01

Hydrophobic organic acids (combined humic and fulvic acids), obtained from an Antarctic Lake with predominantly microbially derived organic carbon sources and two US fiver systems with terrestrial organic carbon sources, were ozonated. Several analyses, including 13C-NMR, UV absorbance, fluorescence, hydrophobic/transphilic classification, and potentiometric titrations, were performed before and after ozonation. Ozonation reduced aromatic carbon content, selectively reducing phenolic carbon content. Ozonation of the samples resulted in increased aliphatic, carboxyl, plus acetal and ketal anomeric carbon content and shifted towards less hydrophobic compounds.Hydrophobic organic acids (combined humic and fulvic acids), obtained from an Antarctic Lake with predominantly microbially derived organic carbon sources and two US river systems with terrestrial organic carbon sources, were ozonated. Several analyses, including 13C-NMR, UV absorbance, fluorescence, hydrophobic/transphilic classification, and potentiometric titrations, were performed before and after ozonation. Ozonation reduced aromatic carbon content, selectively reducing phenolic carbon content. Ozonation of the samples resulted in increased aliphatic, carboxyl, plus acetal and ketal anomeric carbon content and shifted towards less hydrophobic compounds.

Using liquid waste streams as the moisture source during the hydrothermal carbonization of municipal solid wastes.

PubMed

Li, Liang; Hale, McKenzie; Olsen, Petra; Berge, Nicole D

2014-11-01

Hydrothermal carbonization (HTC) is a thermal conversion process that can be an environmentally beneficial approach for the conversion of municipal solid wastes to value-added products. The influence of using activated sludge and landfill leachate as initial moisture sources during the carbonization of paper, food waste and yard waste over time at 250°C was evaluated. Results from batch experiments indicate that the use of activated sludge and landfill leachate are acceptable alternative supplemental liquid sources, ultimately imparting minimal impact on carbonization product characteristics and yields. Regression results indicate that the initial carbon content of the feedstock is more influential than any of the characteristics of the initial liquid source and is statistically significant when describing the relationship associated with all evaluated carbonization products. Initial liquid-phase characteristics are only statistically significant when describing the solids energy content and the mass of carbon in the gas-phase. The use of these alternative liquid sources has the potential to greatly increase the sustainability of the carbonization process. A life cycle assessment is required to quantify the benefits associated with using these alternative liquid sources. Copyright © 2014 Elsevier Ltd. All rights reserved.

Displaced/re-worked rhodolith deposits infilling parts of a complex Miocene multistorey submarine channel: A case history from the Sassari area (Sardinia, Italy)

NASA Astrophysics Data System (ADS)

Murru, Marco; Bassi, Davide; Simone, Lucia

2015-08-01

In the Sassari area (north-western Sardinia, Italy), the Miocene Porto Torres sub-basin sequences represent the complex multistorey mixed carbonate-siliciclastic submarine feature called the Sassari Channel. During the late Burdigalian-early Serravallian, repeated terrigenous supplies from uplifted Paleozoic crystalline substrata fed the Sassari Channel system by means of turbidity and locally hyper-concentrated turbidity flows. Shelfal areas were the source of terrigenous clasts, but open shelf rhodalgal/foramol carbonate areas were very productive and largely also contributed to the channel infilling. Re-worked sands and skeletal debris were discontinuously re-sedimented offshore as pure terrigenous, mixed and/or carbonate deposits. Major sediment supply was introduced between the latest Burdigalian and the start of the middle Langhian, during which a large amount of carbonate, mixed and siliciclastic sediments reached the Porto Torres Basin (Sassari Channel I). Contributions from shallow proximal source areas typify the lower intervals (Unit A) in marginal sectors of the channel. Upward, these evolve into autochthonous rhodolith deposits, winnowed by strong currents in relatively shallow well lit settings within a complex network of narrow tidally-controlled channels (Unit D) locally bearing coral assemblages. Conversely, re-sedimented rhodoliths from the Units B and C accumulated under conditions of higher turbidity. In deeper parts of the channel taxonomically diversified rhodoliths point to the mixing of re-deposited skeletal components from different relatively deep bathmetric settings. In the latest early Langhian, major re-sedimentation episodes, resulting in large prograding bodies (Unit D), triggered by repeated regression pulses in a frame of persistent still stand. During these episodes photophile assemblages dwelled in the elevated margin sectors of the channel. A significant latest early Langhian drop in relative sea-level resulted in impressive mass flows involving early cemented channel-margin and levee blocks and culminated in the formation of major erosional surface (ER-E). Such events seemingly correlate with the long-term global cooling trend of the mid-Miocene climatic transition. Episodes of middle Langhian re-sedimentation concluded with the channel abandon phase after which new erosive episodes followed. Overall, this led to a shift in the Sassari Channel II, with phases presumably started during the earlymost Serravallian, subsequent to the major sea-level drop at the Langhian-Serravallian boundary.

Constraining carbon sources and cycling of endolithic microbial communities in the Atacama Desert

NASA Astrophysics Data System (ADS)

Ziolkowski, L. A.; Slater, G. F.; Davila, A.; Wierzchos, J.

2010-12-01

The Atacama Desert, one of the driest places on Earth, is considered a suitable analog for the extremely arid, oxidizing conditions on the surface of Mars. Recent observations suggest the presence of evaporitic deposits on the surface of Mars, such as those found in the Atacama. Halites in the Atacama have been shown to be hygroscopic and are colonized by photosynthetic microbes. While there is considerable evidence for the decrease in abundance and diversity of microbes closer to the hyper-arid core of the Atacama, experimental studies have thus far have yet to estimate the sources of carbon to these communities and the rate at which they cycle. To address these questions, we characterized the isotopic composition (13C and 14C) microbial community biomarkers from four distinct sites in the Atacama. Sites ranged from halites in the hyper-arid core (Yungay, Salar Grande) to volcanic rock and gypsum near the Monturaqui Crater. Our analysis of the phospholipids fatty acids (PLFA) and glycolipid fatty acid (GLFA) methyl esters of the endoliths agreed with previous studies: the abundance and diversity of microbes decreases approaching the hyper-arid core. The total PLFA and GLFA concentrations were lower at Yungay than Salar Grande and higher in the gypsum and volcanic rock samples. Changes in the mole percentage distribution of the PLFA and GLFA illustrated that the endolithic communities inhabiting the volcanic rock and gypsum were more complex than those inhabiting the halites. ∂13C of both PLFA and GLFA showed that non-halite lipids were less depleted in 13C than halite-lipids. This suggested a difference in carbon source or cycling. The 14C content of PLFA and GLFA varied by up to 250 per mil. Endolith PLFA and GLFA from the gypsum had radiocarbon signatures comparable to the modern atmosphere, which suggests that the predominant source of carbon to the system is the modern atmosphere and that lipids are cycling rapidly in this system. However, at the other three locations both PLFA and GLFA were more depleted in 14C relative to the gypsum, indicative of a difference in carbon sources and cycling. This may relate to the presence of inputs of older carbon to these endolithic environments, or to the persistence of biosignature compounds for significant lengths of time notwithstanding the generally oxidizing nature of the Atacama environment. This persistence may be related to differences in moisture levels and therefore hydrolysis of these compounds. Applied to Mars, our results suggest the potential that biosignatures of photosynthesis may be preserved in low-moisture, high salt endolithic environments. Ongoing work to understand the sources of isotopic variation within the Atacama analogue system will help identify the potential for target biosignatures in similar systems on Mars.

Quantifying Mass Transfer Processes in Groundwater as a Function of Molecular Structure Variation for Multicomponent NAPL Sources

NASA Astrophysics Data System (ADS)

Abbott, J. B., III; Tick, G. R.; Greenberg, R. R.; Carroll, K. C.

2017-12-01

The remediation of nonaqueous liquid (NAPL) contamination sources in groundwater has been shown to be challenging and have limited success in the field. The presence of multicomponent NAPL sources further complicates the remediation due to variability of mass-transfer (dissolution) behavior as a result of compositional and molecular structure variations between the different compounds within the NAPL phase. This study investigates the effects of the contaminant of concern (COC) composition and the bulk-NAPL components molecular structure (i.e. carbon chain length, aliphatic and aromatic) on dissolution and aqueous phase concentrations in groundwater. The specific COCs tested include trichloroethene (TCE), toluene (TOL), and perfluorooctanoic acid (PFOA). Each COC was tested in a series of binary batch experiments using insoluble bulk NAPL including n-hexane (HEX), n-decane (DEC), and n-hexadecane (HEXDEC). These equilibrium batch tests were performed to understand how different carbon-chain-length (NAPL) systems affect resulting COC aqueous phase concentrations. The experiments were conducted with four different COC mole fractions mixed within the bulk-NAPL derivatives (0.1:0.9, 0.05:0.95, 0.01:0.99, 0.001:0.999). Raoult's Law was used to assess the relative ideality of the mass transfer processes for each binary equilibrium dissolution experiment. Preliminary results indicate that as mole fraction of the COC decreases (composition effects), greater deviance from dissolution ideality occurs. It was also shown that greater variation in molecular structure (i.e. greater carbon chain length of bulk-NAPL with COC and aromatic COC presence) exhibited greater dissolution nonideality via Raoult's Law analysis. For instance, TOL (aromatic structure) showed greater nonideality than TCE (aliphatic structure) in the presence of the different bulk-NAPL derivatives (i.e. of various aliphatic carbon chains lengths). The results suggest that the prediction of aqueous phase concentration, from complex multicomponent NAPL sources, is highly dependent upon both composition and molecular structure variations of COC-NAPL mixtures, and such impacts should be taken into account when designing and evaluating a remediation strategy and/or predicting COC concentrations from a source zone region.

Observational and experimental astrochemistry: A high resolution gas phase study of metal containing species in the laboratory and circumstellar envelopes of stars

NASA Astrophysics Data System (ADS)

Pulliam, Robin Leigh

It was once thought that molecules in the interstellar medium (ISM) would be destroyed in the harsh surroundings and conditions of space, and therefore unobservable by radio techniques. However, it is now understood that the chemistry of the ISM is vast and complex. The question still remains as to just how complex is this chemistry? Much is clearly still not understood. This dissertation presents work on the study of metal compounds and cations in the circumstellar envelopes of oxygen- and carbon-rich asymptotic giant branch (AGB) and supergiant stars. Laboratory studies were also conducted on several transition metal compounds of interstellar interest, some of high spin and orbital angular momentum states. Work has been completed to confirm the detection of the debated metal cyanide KCN in the carbon-rich AGB star IRC+10216. KCN joins the list as the fifth interstellar metal cyanide/isocyanide detected in this source. In addition, preliminary results on the search for TiO are presented towards the oxygen-rich supergiant star, VY CMa. To further understand the evolutionary processes of carbon- and oxygen-rich stars, a survey of HCO+ was taken towards the carbon star IRC+10216, the oxygen-rich AGBs TX Cam, IK Tau, and W Hya and the oxygen-rich supergiant NML Cyg. While HCO+ was detected towards all of these sources, the results are vastly different. The outflow of NML Cyg proves to be asymmetric and further study is necessary. Interestingly, while TX Cam and IK Tau are thought to be virtually similar stars, the emission of HCO+ might state otherwise. Finally, the emission from W Hya is significantly narrower than the other sources. To understand species in space with more confidence, a laboratory search for several 3d transition metal species of astrochemical interest was conducted in the laboratory: HZnCl, ZnO, ZnCl, TiS and CrS. All of the molecules have been observed for the first time through high resolution gas phase rotational spectroscopy and the work on ZnO was the first gas-phase study of this molecule. Synthesis of the species required exotic production methods, a DC discharge being required to produce all the zinc species. By studying the rotational spectra, rest frequencies were determined that will be beneficial for figure astronomical searches.

Source and Biological Response of Biochar Organic Compounds Released into Water; Relationships with Bio-Oil Composition and Carbonization Degree.

PubMed

Ghidotti, Michele; Fabbri, Daniele; Mašek, Ondřej; Mackay, Colin Logan; Montalti, Marco; Hornung, Andreas

2017-06-06

Water-soluble organic compounds (WSOCs) were extracted from corn stalk biochar produced at increasing pyrolysis temperatures (350-650 °C) and from the corresponding vapors, collected as bio-oil. WSOCs were characterized by gas chromatography (semivolatile fraction), negative electron spray ionization high resolution mass spectrometry (hydrophilic fraction) and fluorescence spectroscopy. The pattern of semivolatile WSOCs in bio-oil was dominated by aromatic products from lignocellulose, while in biochar was featured by saturated carboxylic acids from hemi/cellulose and lipids with concentrations decreasing with decreasing H/C ratios. Hydrophilic species in poorly carbonized biochar resembled those in bio-oil, but the increasing charring intensity caused a marked reduction in the molecular complexity and degree of aromaticity. Differences in the fluorescence spectra were attributed to the predominance of fulvic acid-like structures in biochar and lignin-like moieties in bio-oil. The divergence between pyrolysis vapors and biochar in the distribution of WSOCs with increasing carbonization was explained by the hydrophobic carbonaceous matrix acting like a filter favoring the release into water of carboxylic and fulvic acid-like components. The formation of these structures was confirmed in biochar produced by pilot plant pyrolysis units. Biochar affected differently shoot and root length of cress seedlings in germination tests highlighting its complex role on plant growth.

Sequence stratigraphy and hydrocarbon potential of the Phu Khanh Basin offshore central Vietnam, South China Sea

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, G.H.; Watkins, J.S.

1996-12-31

The Phu Khanh Basin offshore central Vietnam is one of the few untested basins on the Vietnam margin of the South China Sea. Analysis of over 1,600 km of multi-channel seismic reflection data indicates that the Phu Khanh Basin follows a typical rift-margin order: faulted basement, synrift sedimentation, a breakup unconformity, and postrift sedimentation. Postrift sedimentation consists of a transgressive phase characterized by ramp-like depositional geometries followed by a regressive phase characterized by prograding sequences. An early middle Miocene unconformity separates these two phases. During the transgressive phase rising sea level provided favorable conditions for carbonate buildup development. The regressivemore » interval contains a number of third-order depositional sequences composed of seismically resolvable lowstand, highstand, and rarely, transgressive systems tracts. Lacustrine sediments deposited in graben and half-graben lakes during the rifting stage are probably the principal source rocks. Fractured and/or weathered basement, carbonate complexes, basinfloor fans, and shallows water sands may have good reservoir quality. Potential traps include basement hills, carbonate complexes, fault taps, and stratigraphic traps within lowstand systems tracts. Hydrocarbon indicators such as flat spots, bright spots, gas chimneys with gas mounds on the seafloor occur at a number of locations.« less

Sequence stratigraphy and hydrocarbon potential of the Phu Khanh Basin offshore central Vietnam, South China Sea

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, G.H.; Watkins, J.S.

1996-01-01

The Phu Khanh Basin offshore central Vietnam is one of the few untested basins on the Vietnam margin of the South China Sea. Analysis of over 1,600 km of multi-channel seismic reflection data indicates that the Phu Khanh Basin follows a typical rift-margin order: faulted basement, synrift sedimentation, a breakup unconformity, and postrift sedimentation. Postrift sedimentation consists of a transgressive phase characterized by ramp-like depositional geometries followed by a regressive phase characterized by prograding sequences. An early middle Miocene unconformity separates these two phases. During the transgressive phase rising sea level provided favorable conditions for carbonate buildup development. The regressivemore » interval contains a number of third-order depositional sequences composed of seismically resolvable lowstand, highstand, and rarely, transgressive systems tracts. Lacustrine sediments deposited in graben and half-graben lakes during the rifting stage are probably the principal source rocks. Fractured and/or weathered basement, carbonate complexes, basinfloor fans, and shallows water sands may have good reservoir quality. Potential traps include basement hills, carbonate complexes, fault taps, and stratigraphic traps within lowstand systems tracts. Hydrocarbon indicators such as flat spots, bright spots, gas chimneys with gas mounds on the seafloor occur at a number of locations.« less

Improved Nitrogen Removal Effect In Continuous Flow A2/O Process Using Typical Extra Carbon Source

NASA Astrophysics Data System (ADS)

Wu, Haiyan; Gao, Junyan; Yang, Dianhai; Zhou, Qi; Cai, Bijing

2010-11-01

In order to provide a basis for optimal selection of carbon source, three typical external carbon sources (i.e. methanol, sodium acetate and leachate) were applied to examine nitrogen removal efficiency of continuous flow A2/O system with the influent from the effluent of grit chamber in the second Kunming wastewater treatment plant. The best dosage was determined, and the specific nitrogen removal rate and carbon consumption rate were calculated with regard to individual external carbon source in A2/O system. Economy and technology analysis was also conducted to select the suitable carbon source with a low operation cost. Experimental results showed that the external typical carbon source caused a remarkable enhancement of system nitrate degradation ability. In comparison with the blank test, the average TN and NH3-N removal efficiency of system with different dosing quantities of external carbon source was improved by 15.2% and 34.2%, respectively. The optimal dosage of methanol, sodium acetate and leachate was respectively up to 30 mg/L, 40 mg/L and 100 mg COD/L in terms of a high nitrogen degradation effect. The highest removal efficiency of COD, TN and NH3-N reached respectively 92.3%, 73.9% and 100% with methanol with a dosage of 30 mg/L. The kinetic analysis and calculation revealed that the greatest denitrification rate was 0.0107 mg TN/mg MLVSSṡd with sodium acetate of 60 mg/L. As to carbon consumption rate, however, the highest value occurred in the blank test with a rate of 0.1955 mg COD/mg MLVSSṡd. Also, further economic analysis proved leachate to be pragmatic external carbon source whose cost was far cheaper than methanol.

Organic geochemistry and brine composition in Great Salt, Mono, and Walker Lakes

USGS Publications Warehouse

Domagalski, Joseph L.; Orem, W.H.; Eugster, H.P.

1989-01-01

Samples of Recent sediments, representing up to 1000 years of accumulation, were collected from three closed basin lakes (Mono Lake, CA, Walker Lake, NV, and Great Salt Lake, UT) to assess the effects of brine composition on the accumulation of total organic carbon, the concentration of dissolved organic carbon, humic acid structure and diagenesis, and trace metal complexation. The Great Salt Lake water column is a stratified Na-Mg-Cl-SO4 brine with low alkalinity. Algal debris is entrained in the high density (1.132-1.190 g/cc) bottom brines, and in this region maximum organic matter decomposition occurs by anaerobic processes, with sulfate ion as the terminal electron acceptor. Organic matter, below 5 cm of the sediment-water interface, degrades at a very slow rate in spite of very high pore-fluid sulfate levels. The organic carbon concentration stabilizes at 1.1 wt%. Mono Lake is an alkaline (Na-CO3-Cl-SO4) system. The water column is stratified, but the bottom brines are of lower density relative to the Great Salt Lake, and sedimentation of algal debris is rapid. Depletion of pore-fluid sulfate, near l m of core, results in a much higher accumulation of organic carbon, approximately 6 wt%. Walker Lake is also an alkaline system. The water column is not stratified, and decomposition of organic matter occurs by aerobic processes at the sediment-water interface and by anaerobic processes below. Total organic carbon and dissolved organic carbon concentrations in Walker Lake sediments vary with location and depth due to changes in input and pore-fluid sulfate concentrations. Nuclear magnetic resonance studies (13C) of humic substances and dissolved organic carbon provide information on the source of the Recent sedimentary organic carbon (aquatic vs. terrestrial), its relative state of decomposition, and its chemical structure. The spectra suggest an algal origin with little terrestrial signature at all three lakes. This is indicated by the ratio of aliphatic to aromatic carbon and the absence of chemical structures indicative of the lignin of vascular plants. The dissolved organic carbon of the Mono Lake pore fluids is structurally related to humic acid and is also related to carbohydrate metabolism. The alkaline pore fluids, due to high pH, solubilize high molecular weight organic matter from the sediments. This hydrophilic material is a metal complexing agent. Despite very high algal productivities, organic carbon accumulation can be low in stratified lakes if the anoxic bottom waters are hypersaline with high concentrations of sulfate ion. Labile organic matter is recycled to the water column and the sedimentary organic matter is relatively nonsusceptible to bacterial metabolism. As a result, pore-fluid dissolved organic carbon and metal-organic complexation are low. ?? 1989.

21 CFR 520.1802 - Piperazine-carbon disulfide complex oral dosage forms.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 21 Food and Drugs 6 2010-04-01 2010-04-01 false Piperazine-carbon disulfide complex oral dosage forms. 520.1802 Section 520.1802 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND... § 520.1802 Piperazine-carbon disulfide complex oral dosage forms. ...

Effect of carbon source type on intracellular stored polymers during endogenous denitritation (ED) treating landfill leachate.

PubMed

Miao, Lei; Wang, Shuying; Li, Baikun; Cao, Tianhao; Zhang, Fangzhai; Wang, Zhong; Peng, Yongzhen

2016-09-01

Glycogen accumulating organisms (GAOs) capable of storing organic compounds as polyhydroxyalkanoate (PHA) have been used for endogenous denitritation (ED), but the effect of carbon sources type on nitrogen removal performance of GAOs treating landfill leachate is unclear. In this study, a successful ED system treating landfill leachate (COD/NH4(+)-N (C/N): 4) without external carbon source addition was applied. The mature leachate with C/N of 1 was used as the feeding base solution, with acetate, propionate, and glucose examined as the carbon sources, and their effects on yields and compositions of PHA produced by GAOs were determined and associated with nitrogen removal performance. In the case of sole carbon source, acetate was much easier to be stored than propionate and glucose, which led to a higher nitrogen removal efficiency. Glucose had the lowest amount of PHA storage and led to the lowest performance. In the case of composite carbon sources (two scenarios: acetate + propionate; acetate + propionate + glucose), GAOs stored sufficient PHA and exhibited similar nitrogen removal efficiencies. Moreover, type of carbon source influenced the compositions of PHA. The polyhydroxybutyrate (PHB) fraction in PHA was far more than polyhydroxyvalerate (PHV) in all tests. PHV was synthesized only when acetate existed in carbon source. The microbial diversity analysis revealed that Proteobacteria was the most abundant phylum. Among the 108 genera detected in this ED system, the genera responsible for denitritation were Thauera, Paracoccus, Ottowia and Comamonadaceae_unclassified, accounting for 46.21% of total bacteria. Especially, Paracoccus and Comamonadaceae_unclassified transformed the carbon source into PHA for denitritation, and carried out endogenous denitritation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Diurnal and seasonal variation of various carbon fluxes from an urban tower platform in Houston, TX

NASA Astrophysics Data System (ADS)

Schade, G. W.; Werner, N.; Hale, M. C.

2013-12-01

We measured carbon fluxes (CO2, CO, VOCs) from a tall lattice tower in Houston between 2007 and 2009, and 2011-2013. We present results from various analyses of (i) anthropogenic and biogenic CO2 fluxes using a quadrant segregation technique, (ii) seasonal and multi-year changes of CO fluxes as related to car traffic and industrial sources, and (iii) the accuracy of, and usefulness of a bulk flux footprint model to quantify pentane emissions form a distant source in comparison to permitted emission levels. Segregated and net anthropogenic CO2 fluxes were dominated by car traffic but industrial sources were identified as well. Emissions sank to minimal levels after hurricane Ike had passed over Houston, causing a traffic shutdown and lower population density. Segregated biogenic fluxes showed a clear seasonal variation with photosynthetic activity between April and November, and large effects of the 2011 Texas drought due to negligible irrigation in the study area. Carbon monoxide fluxes, measured via a flux gradient technique, are even stronger dominated by car traffic than CO2 fluxes and serve as a traffic tracer. Our data show a continued drop in emissions over time, seasonal changes with higher emissions during winter, and local influences due to industrial emissions. Lastly, we present the results of a tracer release study and a single point source quantification to test a bulk footprint model in this complex urban area. Known releases of volatile acetone and MEK were compered to measured fluxes using a REA-GC-FID system, and permit emissions of pentane from a foam plastics manufacturing facility were compared to measured pentane fluxes. Both comparisons reveal a surprisingly accurate performance of the footprint model within a factor of 2.

Synthesis of hydrogen-carbon clathrate material and hydrogen evolution therefrom at moderate temperatures and pressures

DOEpatents

Lueking, Angela [State College, PA; Narayanan, Deepa [Redmond, WA

2011-03-08

A process for making a hydrogenated carbon material is provided which includes forming a mixture of a carbon source, particularly a carbonaceous material, and a hydrogen source. The mixture is reacted under reaction conditions such that hydrogen is generated and/or released from the hydrogen source, an amorphous diamond-like carbon is formed, and at least a portion of the generated and/or released hydrogen associates with the amorphous diamond-like carbon, thereby forming a hydrogenated carbon material. A hydrogenated carbon material including a hydrogen carbon clathrate is characterized by evolution of molecular hydrogen at room temperature at atmospheric pressure in particular embodiments of methods and compositions according to the present invention.

Reefs as cradles of evolution and sources of biodiversity in the Phanerozoic.

PubMed

Kiessling, Wolfgang; Simpson, Carl; Foote, Michael

2010-01-08

Large-scale biodiversity gradients among environments and habitats are usually attributed to a complex array of ecological and evolutionary factors. We tested the evolutionary component of such gradients by compiling the environments of the geologically oldest occurrences of marine genera and using sampling standardization to assess if originations tended to be clustered in particular environments. Shallow, tropical environments and carbonate substrates all tend to have harbored high origination rates. Diversity within these environments tended to be preferentially generated in reefs, probably because of their habitat complexity. Reefs were also prolific at exporting diversity to other environments, which might be a consequence of low-diversity habitats being more susceptible to invasions.

Solid sampling high-resolution continuum source graphite furnace atomic absorption spectrometry for gold determination in geological samples after preconcentration onto carbon nanotubes

NASA Astrophysics Data System (ADS)

Dobrowolski, Ryszard; Mróz, Agnieszka; Dąbrowska, Marzena; Olszański, Piotr

2017-06-01

A novelty method for the determination of gold in geological samples by solid sampling high-resolution continuum source graphite furnace atomic absorption spectrometry (SS HR CS GF AAS) after solid-phase extraction onto modified carbon nanotubes (CNT) was described. The methodology developed is based on solid phase extraction of Au(III) ions from digested samples to eliminate strong interference caused by iron compounds and problems related to inhomogeneities of the samples. The use of aqueous or solid standard for calibration was studied and the slope of calibration curve was the same for both of these modes. This statement indicates the possibility to perform the calibration of the method using aqueous standard solutions. Under optimum conditions the absolute detection limit for gold was equal to 2.24 · 10- 6 μg g- 1 while the adsorption capacity of modified carbon nanotubes was 264 mg g- 1. The proposed procedure was validated by the application of certified reference materials (CRMs) with different content of gold and different matrix, the results were in good agreement with certified values. The method was successfully applied for separation and determination of gold ions in complex geological samples, with precision generally better than 8%.

Method for the production of dicarboxylic acids

DOEpatents

Nghiem, N.P.; Donnelly, M.; Millard, C.S.; Stols, L.

1999-02-09

The present invention is an economical fermentation method for the production of carboxylic acids comprising the steps of (a) inoculating a medium having a carbon source with a carboxylic acid-producing organism; (b) incubating the carboxylic acid-producing organism in an aerobic atmosphere to promote rapid growth of the organism thereby increasing the biomass of the organism; (c) controllably releasing oxygen to maintain the aerobic atmosphere; (d) controllably feeding the organism having increased biomass with a solution containing the carbon source to maintain the concentration of the carbon source within the medium of about 0.5 g/l up to about 1 g/l; (e) depriving the aerobic atmosphere of oxygen to produce an anaerobic atmosphere to cause the organism to undergo anaerobic metabolism; (f) controllably feeding the organism having increased biomass a solution containing the carbon source to maintain the concentration of the carbon source within the medium of {>=}1 g/l; and (g) converting the carbon source to carboxylic acids using the anaerobic metabolism of the organism. 7 figs.

Method for the production of dicarboxylic acids

DOEpatents

Nghiem, Nhuan Phu; Donnelly, Mark; Millard, Cynthia S.; Stols, Lucy

1999-01-01

The present invention is an economical fermentation method for the production of carboxylic acids comprising the steps of a) inoculating a medium having a carbon source with a carboxylic acid-producing organism; b) incubating the carboxylic acid-producing organism in an aerobic atmosphere to promote rapid growth of the organism thereby increasing the biomass of the organism; c) controllably releasing oxygen to maintain the aerobic atmosphere; d) controllably feeding the organism having increased biomass with a solution containing the carbon source to maintain the concentration of the carbon source within the medium of about 0.5 g/L up to about 1 g/L; e) depriving the aerobic atmosphere of oxygen to produce an anaerobic atmosphere to cause the organism to undergo anaerobic metabolism; f) controllably feeding the organism having increased biomass a solution containing the carbon source to maintain the concentration of the carbon source within the medium of .gtoreq.1 g/L; and g) converting the carbon source to carboxylic acids using the anaerobic metabolism of the organism.

Feasibility study of a cyclotron complex for hadron therapy

NASA Astrophysics Data System (ADS)

Smirnov, V.; Vorozhtsov, S.

2018-04-01

An accelerator complex for hadron therapy based on a chain of cyclotrons is under development at JINR (Dubna, Russia), and the corresponding conceptual design is under preparation. The complex mainly consists of two superconducting cyclotrons. The first accelerator is a compact cyclotron used as an injector to the main accelerator, which is a six-fold separated sector machine. The facility is intended for generation of protons and carbon beams. The H2+ and 12C6+ ions from the corresponding ECR ion sources are accelerated in the injector-cyclotron up to the output energy of 70 MeV/u. Then, the H2+ ions are extracted from the injector by a stripping foil, and the resulting proton beam with the energy of 70 MeV is used for medical purposes. After acceleration in the main cyclotron, the carbon beam can be either used directly for therapy or introduced to the main cyclotron for obtaining the final energy of 400 MeV/u. The basic requirements to the project are the following: compliance to medical requirements, compact size, feasible design, and high reliability of all systems of the complex. The advantages of the dual cyclotron design can help reaching these goals. The initial calculations show that this design is technically feasible with acceptable beam dynamics. The accelerator complex with a relatively compact size can be a good solution for medical applications. The basic parameters of the facility and detailed investigation of the magnetic system and beam dynamics are described.

Quantifying uncertainty in national forest carbon stocks: challenges and opportunities for the United States National Greenhouse Gas Inventory

NASA Astrophysics Data System (ADS)

Clough, B.; Russell, M.; Domke, G. M.; Woodall, C. W.

2016-12-01

Uncertainty estimates are needed to establish confidence in national forest carbon stocks and to verify changes reported to the United Nations Framework Convention on Climate Change. Good practice guidance from the Intergovernmental Panel on Climate Change stipulates that uncertainty assessments should neither exaggerate nor underestimate the actual error within carbon stocks, yet methodological guidance for forests has been hampered by limited understanding of how complex dynamics give rise to errors across spatial scales (i.e., individuals to continents). This talk highlights efforts to develop a multi-scale, data-driven framework for assessing uncertainty within the United States (US) forest carbon inventory, and focuses on challenges and opportunities for improving the precision of national forest carbon stock estimates. Central to our approach is the calibration of allometric models with a newly established legacy biomass database for North American tree species, and the use of hierarchical models to link these data with the Forest Inventory and Analysis (FIA) database as well as remote sensing datasets. Our work suggests substantial risk for misestimating key sources of uncertainty including: (1) attributing more confidence in allometric models than what is warranted by the best available data; (2) failing to capture heterogeneity in biomass stocks due to environmental variation at regional scales; and (3) ignoring spatial autocorrelation and other random effects that are characteristic of national forest inventory data. Our results suggest these sources of error may be much higher than is generally assumed, though these results must be understood with the limited scope and availability of appropriate calibration data in mind. In addition to reporting on important sources of uncertainty, this talk will discuss opportunities to improve the precision of national forest carbon stocks that are motivated by our use of data-driven forecasting including: (1) improving the taxonomic and geographic scope of available biomass data; (2) direct attribution of landscape-level heterogeneity in biomass stocks to specific ecological processes; and (3) integration of expert opinion and meta-analysis to lessen the influence of often highly variable datasets on biomass stock forecasts.

The LandCarbon Web Application: Advanced Geospatial Data Delivery and Visualization Tools for Communication about Ecosystem Carbon Sequestration and Greenhouse Gas Fluxes

NASA Astrophysics Data System (ADS)

Thomas, N.; Galey, B.; Zhu, Z.; Sleeter, B. M.; Lehmer, E.

2015-12-01

The LandCarbon web application (http://landcarbon.org) is a collaboration between the U.S. Geological Survey and U.C. Berkeley's Geospatial Innovation Facility (GIF). The LandCarbon project is a national assessment focused on improved understanding of carbon sequestration and greenhouse gas fluxes in and out of ecosystems related to land use, using scientific capabilities from USGS and other organizations. The national assessment is conducted at a regional scale, covers all 50 states, and incorporates data from remote sensing, land change studies, aquatic and wetland data, hydrological and biogeochemical modeling, and wildfire mapping to estimate baseline and future potential carbon storage and greenhouse gas fluxes. The LandCarbon web application is a geospatial portal that allows for a sophisticated data delivery system as well as a suite of engaging tools that showcase the LandCarbon data using interactive web based maps and charts. The web application was designed to be flexible and accessible to meet the needs of a variety of users. Casual users can explore the input data and results of the assessment for a particular area of interest in an intuitive and interactive map, without the need for specialized software. Users can view and interact with maps, charts, and statistics that summarize the baseline and future potential carbon storage and fluxes for U.S. Level 2 Ecoregions for 3 IPCC emissions scenarios. The application allows users to access the primary data sources and assessment results for viewing and download, and also to learn more about the assessment's objectives, methods, and uncertainties through published reports and documentation. The LandCarbon web application is built on free and open source libraries including Django and D3. The GIF has developed the Django-Spillway package, which facilitates interactive visualization and serialization of complex geospatial raster data. The underlying LandCarbon data is available through an open application programming interface (API), which will allow other organizations to build their own custom applications and tools. New features such as finer scale aggregation and an online carbon calculator are being added to the LandCarbon web application to continue to make the site interactive, visually compelling, and useful for a wide range of users.

Between carbonatite and lamproite—Diamondiferous Torngat ultramafic lamprophyres formed by carbonate-fluxed melting of cratonic MARID-type metasomes

NASA Astrophysics Data System (ADS)

Tappe, Sebastian; Foley, Stephen F.; Kjarsgaard, Bruce A.; Romer, Rolf L.; Heaman, Larry M.; Stracke, Andreas; Jenner, George A.

2008-07-01

New U-Pb perovskite ages reveal that diamondiferous ultramafic lamprophyre magmas erupted through the Archean crust of northern Labrador and Quebec (eastern Canada) between ca. 610 and 565 Ma, a period of strong rifting activity throughout contiguous Laurentia and Baltica. The observed Torngat carbonate-rich aillikite/carbonatite and carbonate-poor mela-aillikite dyke varieties show a large spread in Sr-Nd-Hf-Pb isotope ratios with pronounced correlations between isotope systems. An isotopically depleted component is identified solely within aillikites ( 87Sr/ 86Sr i = 0.70323-0.70377; ɛNd i = +1.2-+1.8; ɛHf i = +1.4-+3.5; 206Pb/ 204Pb i = 18.2-18.5), whereas some aillikites and all mela-aillikites range to more enriched isotope signatures ( 87Sr/ 86Sr i = 0.70388-0.70523; ɛNd i = -0.5 to -3.9; ɛHf i = -0.6 to -6.0; 206Pb/ 204Pb i = 17.8-18.2). These contrasting isotopic characteristics of aillikites/carbonatites and mela-aillikites, along with subtle differences in their modal carbonate, SiO 2, Al 2O 3, Na 2O, Cs-Rb, and Zr-Hf contents, are consistent with two distinctive metasomatic assemblages of different age in the mantle magma source region. Integration of petrologic, geochemical, and isotopic information leads us to propose that the isotopically enriched component originated from a reduced phlogopite-richterite-Ti-oxide dominated source assemblage that is reminiscent of MARID suite xenoliths. In contrast, the isotopically depleted component was derived from a more oxidized phlogopite-carbonate dominated source assemblage. We argue that low-degree CO 2-rich potassic silicate melts from the convective upper mantle were preferentially channelled into an older, pre-existing MARID-type vein network at the base of the North Atlantic craton lithosphere, where they froze to form new phlogopite-carbonate dominated veins. Continued stretching and thinning of the cratonic lithosphere during the Late Neoproterozoic remobilized the carbonate-rich vein material and induced volatile-fluxed fusion of the MARID-type veins and the cold peridotite substrate. Isotopic modelling suggests that only 5-12% trace element contribution from such geochemically extreme MARID-type material is required to produce the observed compositional shift from the isotopically most depleted aillikites/carbonatites towards enriched mela-aillikites. We conclude that cold cratonic mantle lithosphere can host several generations of contrasting vein assemblages, and that each may have formed during past tectonic and magmatic events under distinctively different physicochemical conditions. Although cratonic MARID-type and carbonate-bearing veins in peridotite can be the respective sources for lamproite and carbonatite magmas when present as the sole metasome, their concomitant fusion in a complex source region may give rise to a whole new variety of deep volatile-rich magmas and we suggest that orangeites (formerly Group 2 kimberlites), kamafugites, and certain types of ultramafic lamprophyre are formed in this manner.

Morphology and topography study of graphene synthesized from plant oil

NASA Astrophysics Data System (ADS)

Robaiah, M.; Rusop, M.; Abdullah, S.; Khusaimi, Z.; Azhan, H.; Laila, M. O.; Salifairus, M. J.; Asli, N. A.

2018-05-01

The graphene is material consists of bonded atom carbon atoms in sheet form one atom thick. The different types of carbon sources which are refined corn oil, palm oil and waste cooking palm oil were used as carbon feedstock to supply carbon atom for synthesizing graphene on the nickel substrate by thermal chemical vapour deposition. The substrate and carbon sources were placed in double zone furnaces. The carbon sources and the substrate were heated at 300 °C and 900 °C respectively. The both furnaces were switched off after synthesis time for cooling process finish. The formation of the graphene on the Ni surface appears due to segregation and precipitation of a high amount of carbon from the source material during the cooling process. FESEM, AFM, UV-VIS Spectroscopy and Raman Spectroscopy were used to characterize and synthesized graphene.

Method for the preparation of carbon fiber from polyolefin fiber precursor, and carbon fibers made thereby

DOEpatents

Naskar, Amit Kumar; Hunt, Marcus Andrew; Saito, Tomonori

2015-08-04

Methods for the preparation of carbon fiber from polyolefin fiber precursor, wherein the polyolefin fiber precursor is partially sulfonated and then carbonized to produce carbon fiber. Methods for producing hollow carbon fibers, wherein the hollow core is circular- or complex-shaped, are also described. Methods for producing carbon fibers possessing a circular- or complex-shaped outer surface, which may be solid or hollow, are also described.

The Effects of Different External Carbon Sources on Nitrous Oxide Emissions during Denitrification in Biological Nutrient Removal Processes

NASA Astrophysics Data System (ADS)

Hu, Xiang; Zhang, Jing; Hou, Hongxun

2018-01-01

The aim of this study was to investigate the effects of two different external carbon sources (acetate and ethanol) on the nitrous oxide (N2O) emissions during denitrification in biological nutrient removal processes. Results showed that external carbon source significantly influenced N2O emissions during the denitrification process. When acetate served as the external carbon source, 0.49 mg N/L and 0.85 mg N/L of N2O was produced during the denitrificaiton processes in anoxic and anaerobic/anoxic experiments, giving a ratio of N2O-N production to TN removal of 2.37% and 4.96%, respectively. Compared with acetate, the amount of N2O production is negligible when ethanol used as external carbon addition. This suggested that ethanol is a potential alternative external carbon source for acetate from the point of view of N2O emissions.

Nitrogen and Phosphorus Co-Doped Carbon Nanodots as a Novel Fluorescent Probe for Highly Sensitive Detection of Fe(3+) in Human Serum and Living Cells.

PubMed

Shi, Bingfang; Su, Yubin; Zhang, Liangliang; Huang, Mengjiao; Liu, Rongjun; Zhao, Shulin

2016-05-04

Chemical doping with heteroatoms can effectively modulate physicochemical and photochemical properties of carbon dots (CDs). However, the development of multi heteroatoms codoped carbon nanodots is still in its early stage. In this work, a facile hydrothermal synthesis strategy was applied to synthesize multi heteroatoms (nitrogen and phosphorus) codoped carbon nanodots (N,P-CDs) using glucose as carbon source, and ammonia, phosphoric acid as dopant, respectively. Compared with CDs, the multi heteroatoms doped CDs resulted in dramatic improvement in the electronic characteristics and surface chemical activities. Therefore, the N,P-CDs prepared as described above exhibited a strong blue emission and a sensitive response to Fe(3+). The N,P-CDs based fluorescent sensor was then applied to sensitively determine Fe(3+) with a detection limit of 1.8 nM. Notably, the prepared N,P-CDs possessed negligible cytotoxicity, excellent biocompatibility, and high photostability. It was also applied for label-free detection of Fe(3+) in complex biological samples and the fluorescence imaging of intracellular Fe(3+), which indicated its potential applications in clinical diagnosis and other biologically related study.

Genesis of kasolite associated with aplite-pegmatite at Jabal Sayid, Hijaz region, Kingdom of Saudi Arabia

NASA Astrophysics Data System (ADS)

Dawood, Yehia H.; Harbi, Hesham M.; Abd El-Naby, Hamdy H.

2010-01-01

In this study, we report kasolite Pb(UO 2)SiO 4·(H 2O) for the first time as a main uranyl mineral in the mineralized aplite-pegmatite of Jabal Sayid, Hijaz region. It commonly forms clusters of yellow acicular crystals in the voids and fractures. The mineral chemistry and mineralogical characteristics of kasolite were investigated using different techniques. Calcium, iron and phosphorus are detected in kasolite in addition to its major constituents; uranium, lead and silicon. Lead does not exist as a radiogenic product and not even as a substitute for uranium in the mineral structure. Alternatively, galena mineralization could be considered as a source for lead. The fluoride and carbonate complexes played a significant role in the formation of kasolite. High temperature hydrothermal solutions reacted with pre-existing uranium-bearing metamictized accessory minerals such as pyrochlore, U-rich thorite and zircon to form uranous fluoride complexes. These complexes are predominant in reducing environment and at pH 4. When the fluids approached the surface passing through fracture system, the oxygen fugacity ( fO 2) and the pH increased because of the loss of volatile components. At these conditions, uranous fluorides would convert to uranyl fluoride complexes UO 2F 3-. Further decrease in temperature was associated with the decay of the activity of fluorine ion by the dilution of hydrothermal solutions and precipitation of fluorite. At this condition, uranyl-carbonate complexes are favoured. These complexes were combined later with silica and lead to form kasolite.

Biodegradation of CuTETA, an effluent by-product in mineral processing.

PubMed

Cushing, Alexander M L; Kelebek, Sadan; Yue, Siqing; Ramsay, Juliana A

2018-04-13

Polyamines such as triethylenetetramine (TETA) and other amine chelators are used in mineral processing applications. Formation of heavy metal complexes of these reagents as a by-product in effluent water is a recent environmental concern. In this study, Paecilomyces sp. was enriched from soil on TETA as the sole source of carbon and nitrogen and was found to degrade > 96 and 90% CuTETA complexes at initial concentrations of 0.32 and 0.79 mM respectively, following 96-h incubation. After destabilization, most of the copper (> 78%) was complexed extracellularly and the rest was associated with the cell. Mass spectroscopy results provided confirmation that copper re-complexed with small, extracellular, and organic molecules. There are no reports in the literature that Paecilomyces or any other organism can grow on TETA or CuTETA. This study is the first to show that biological destabilization of CuTETA complexes in mineral processing effluents is feasible.

Source apportionment of aerosol particles near a steel plant by electron microscopy.

PubMed

Ebert, Martin; Müller-Ebert, Dörthe; Benker, Nathalie; Weinbruch, Stephan

2012-12-01

The size, morphology and chemical composition of 37,715 individual particles collected over 22 sampling days in the vicinity of a large integrated steel production were studied by scanning and transmission electron microscopy. Based on the morphology, chemistry and beam stability the particles were classified into the following fourteen groups: silicates, sea salt, calcium sulfates, calcium carbonates, carbonate-silicate mixtures, sulfate-silicate mixtures, iron oxides, iron mixtures, metal oxide-metals, complex secondary particles, soot, Cl-rich particles, P-rich particles, and other particles. The majority of iron oxide (≈85%) and metal oxide-metal (≈70%) particles as well as ≈20% of the silicate particles are fly ashes from high temperature processes. The emissions from the steel work are dominated by iron oxide particles. For source apportionment, seven source categories and two sectors of local wind direction (industrial and urban background) were distinguished. In both sectors PM₁₀ consists of four major source categories: 35% secondary, 20% industrial, 17% soil and 16% soot in the urban background sector compared to 45% industrial, 20% secondary, 13% soil, and 9% soot in the industrial sector. As the secondary and the soot components are higher in the urban background sector than in the industrial sector, it is concluded that both components predominantly originate from urban background sources (traffic, coal burning, and domestic heating). Abatement measures should not only focus on the steel work but should also include the urban background aerosol.

Varying sediment sources (Hudson Strait, Cumberland Sound, Baffin Bay) to the NW Labrador Sea slope between and during Heinrich events 0 to 4

USGS Publications Warehouse

Andrews, John T.; Barber, D.C.; Jennings, A.E.; Eberl, D.D.; Maclean, B.; Kirby, M.E.; Stoner, J.S.

2012-01-01

Core HU97048-007PC was recovered from the continental Labrador Sea slope at a water depth of 945 m, 250 km seaward from the mouth of Cumberland Sound, and 400 km north of Hudson Strait. Cumberland Sound is a structural trough partly floored by Cretaceous mudstones and Paleozoic carbonates. The record extends from ∼10 to 58 ka. On-board logging revealed a complex series of lithofacies, including buff-colored detrital carbonate-rich sediments [Heinrich (H)-events] frequently bracketed by black facies. We investigate the provenance of these facies using quantitative X-ray diffraction on drill-core samples from Paleozoic and Cretaceous bedrock from the SE Baffin Island Shelf, and on the < 2-mm sediment fraction in a transect of five cores from Cumberland Sound to the NW Labrador Sea. A sediment unmixing program was used to discriminate between sediment sources, which included dolomite-rich sediments from Baffin Bay, calcite-rich sediments from Hudson Strait and discrete sources from Cumberland Sound. Results indicated that the bulk of the sediment was derived from Cumberland Sound, but Baffin Bay contributed to sediments coeval with H-0 (Younger Dryas), whereas Hudson Strait was the source during H-events 1–4. Contributions from the Cretaceous outcrops within Cumberland Sound bracket H-events, thus both leading and lagging Hudson Strait-sourced H-events.

Deep mantle: Enriched carbon source detected

NASA Astrophysics Data System (ADS)

Barry, Peter H.

2017-09-01

Estimates of carbon in the deep mantle vary by more than an order of magnitude. Coupled volcanic CO2 emission data and magma supply rates reveal a carbon-rich mantle plume source region beneath Hawai'i with 40% more carbon than previous estimates.

A Infrared Absorption Study of Dopant-Hydrogen Complexes in Semiconductors

NASA Astrophysics Data System (ADS)

Kozuch, David Michael

1992-01-01

Hydrogen passivation of shallow electrical dopants in semiconductors has been investigated. In particular, the passivation of the shallow dopants tin, carbon, and silicon in gallium arsenide has been studied via Fourier transform infrared spectroscopy, thermal annealing, Hall effect, secondary ion mass spectroscopy, and uniaxial stress. The bond-stretching and bond-wagging vibrational modes of the rm Sn_{Ga} - H complex in GaAs have been identified at 1327.8 cm^{-1} and 967.7 cm ^{-1}, respectively. The presence of hydrogen in the defect pair is confirmed by the deuterium -shifted bond-stretching signal at 746.6 cm^ {-1}. Infrared and Hall data correlated the passivation of Sn_{rm Ga } donors with the formation of the rm Sn_{Ga} - H complexes. A series of isochronal anneals probed the thermal stability of the complex. Arguments supporting an antibonding configuration for the rm Sn_{Ga} - H complex are presented. Infrared measurements on highly carbon doped epi -layers reveal new absorption signals at 2643, 2651, and 2688 cm^{-1} in addition to the previously identified rm C_ {As} - H stretching vibration at 2636 cm^{-1}. These new signals are related to a family of carbon-hydrogen complexes: rm C_{x} - H. Deuterium -shifted counterparts for all these signals have been observed for the first time. Sources of hydrogen have been traced to the metalorganic precursors and carrier gas used during epi-layer growth. Hydrogen-containing annealing ambients were surprisingly effective for introducing hydrogen into the epi-layers. Several atomic arrangements for the new rm C_{x} - H complexes have been considered with the most likely candidate being a rm C_{As} - H complex perturbed by another C_{rm As} acceptor in a second nearest neighbor position. The first uniaxial stress measurements have been performed on the rm Si_{As} - H complex in GaAs. The stress-induced frequency shifts and the intensity ratios of the stress-split components of the 2094.45 cm^{-1} stretching frequency reveal that the complex has trigonal symmetry. Reorientation of the stress-aligned complexes occurred by thermally activated jumps of the hydrogen atom with an activation energy of E_{rm A} = 0.26 eV. The piezospectroscopic tensor of the rm Si_{As} - H complex has been determined. The similarities between the stress data for the rm Si_{As } - H complex and the well-studied B - H complex in silicon suggest a bond-centered configuration for the rm Si_{As} - H defect pair.

Diiridium Bimetallic Complexes Function as a Redox Switch To Directly Split Carbonate into Carbon Monoxide and Oxygen.

PubMed

Chen, Tsun-Ren; Wu, Fang-Siou; Lee, Hsiu-Pen; Chen, Kelvin H-C

2016-03-23

A pair of diiridium bimetallic complexes exhibit a special type of oxidation-reduction reaction that could directly split carbonate into carbon monoxide and molecular oxygen via a low-energy pathway needing no sacrificial reagent. One of the bimetallic complexes, Ir(III)(μ-Cl)2Ir(III), can catch carbonato group from carbonate and reduce it to CO. The second complex, the rare bimetallic complex Ir(IV)(μ-oxo)2Ir(IV), can react with chlorine to release O2 by the oxidation of oxygen ions with synergistic oxidative effect of iridium ions and chlorine atoms. The activation energy needed for the key reaction is quite low (∼20 kJ/mol), which is far less than the dissociation energy of the C═O bond in CO2 (∼750 kJ/mol). These diiridium bimetallic complexes could be applied as a redox switch to split carbonate or combined with well-known processes in the chemical industry to build up a catalytic system to directly split CO2 into CO and O2.

Non-PGM cathode catalysts for fuel cell application derived from heat treated heteroatomic amines precursors

DOEpatents

Serov, Alexey; Halevi, Barr; Artyushkova, Kateryna; Atanassov, Plamen B; Martinez, Ulises A

2017-04-25

A method of preparing M-N--C catalysts utilizing a sacrificial support approach and inexpensive and readily available polymer precursors as the source of nitrogen and carbon is disclosed. Exemplary polymer precursors include non-porphyrin precursors with no initial catalytic activity. Examples of suitable non-catalytic non-porphyrin precursors include, but are not necessarily limited to low molecular weight precursors that form complexes with iron such as 4-aminoantipirine, phenylenediamine, hydroxysuccinimide, ethanolamine, and the like.

Biohydrogenesis in the Thermotogales

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kelly, Robert M.; Blum, Paul H.; Noll, Kenneth M.

The production and consumption of molecular hydrogen drives the physiology and bioenergetics of many microorganisms in hydrothermal environments. As such, the potential of these microorganisms as model systems to probe fundamental issues related to biohydrogen production merits consideration. It is important to understand how carbon/energy sources relate to the disposition of reducing power and, ultimately, the formation of molecular hydrogen by high temperature microorganisms. This project focused on bacteria in the thermophilic order Thermotogales, fermentative anaerobes that produce H 2 from simple and complex carbohydrates.

Understanding the Dynamics of Soil Carbon in CMIP5 Models

NASA Astrophysics Data System (ADS)

Todd-Brown, K. E.; Luo, Y.; Randerson, J. T.; Allison, S. D.; Smith, M. J.

2014-12-01

Soil carbon stocks have the potential to be a strong source or sink for carbon dioxide over the next century, playing a critical role in climate change. These stocks are the result of small differences between much larger primary carbon fluxes: gross primary production, litter fall, autotrophic respiration and heterotrophic respiration. There was little agreement on predicted soil carbon stocks between Earth system models (ESMs) in the most recent Climate Model Intercomparison Project. Predicted present-day stocks ranged from roughly 500 Pg to over 3000 Pg and predicted changes over the 21st century ranged from -70 Pg to +250 Pg). The primary goal of this study was to understand why such large differences exist. We constructed four reduced complexity models to describe the primary carbon fluxes, making different assumptions about how soil carbon fluxes are modelled in ESMs. For each of these reduced complexity models we statistically inferred the most likely model parameters given the gridded ESM simulation outputs. Gross primary production was best explained by incoming short wave radiation, CO2 concentration, and leaf area index (global GPP comparison of simulation vs reduced complexity model of R2>0.9 (p < 1e-4) with slopes between 0.65 and 1.2 and intercepts between -13 and 67 Pg C yr-1). Autotrophic respiration was best explained as a proportion of GPP (R2 > 0.9 (p < 1e-4) with slopes between 0.78 and 1.1 and intercepts between -15 and 14 Pg C yr-1). Flux between the vegetation and soil pools were best explained as a proportion of the vegetation carbon stock (R2 > 0.9 (p < 1e-4) with slopes between 0.9 and 2.1 and intercepts between -65 and 25 Pg C yr-1). Finally heterotrophic respiration was best explained as a function of soil carbon stocks and soil temperature (R2 > 0.9 (p < 1e-4) with slopes between 0.7 and 1.5 and intercepts between -40 and 15 Pg C yr-1). This research suggests three main lines of decomposition model improvement: 1) improve connecting sub-models, 2) data integration to improve parameterization, 3) modification of model structure. The implied variation in RCM parameterization suggests that data integration could constrain model simulation results. However, the similarity in model structure may lead to systematic biases in the simulations without the introduction of new model structures.

Differences in the OC/EC Ratios that Characterize Ambient and Source Aerosols due to Thermal-Optical Analysis

EPA Science Inventory

Thermal-optical analysis (TOA) is typically used to measure the OC/EC (organic carbon/elemental carbon) and EC/TC (elemental carbon/total carbon) ratios in source and atmospheric aerosols. The present study utilizes a dual-optical carbon aerosol analyzer to examine the effects of...

Diverse origins and pre-depositional histories of organic matter in contemporary Chinese marginal sea sediments

NASA Astrophysics Data System (ADS)

Tao, Shuqin; Eglinton, Timothy I.; Montluçon, Daniel B.; McIntyre, Cameron; Zhao, Meixun

2016-10-01

Marginal seas are estimated to account for up to 90% of organic carbon (OC) burial in marine sediments, and thus play an important role in global carbon cycle. However, comprehensive assessments of carbon budgets for marginal sea systems are challenging due to their inherent complexity, with spatial and temporal variability in carbon inputs and dispersal processes. We examine the Bohai Sea and Yellow Sea (BS-YS) in order to further our understanding of sedimentary OC delivery, translocation and accumulation in a shallow marginal sea system. Bulk properties and the content and isotopic compositions (Δ14C, δ13C) of source-specific plant wax n-alkyl lipid biomarkers were determined for a suite of surficial sediment samples. Variable δ13C values (-25.1‰ to -28.5‰) and contemporary radiocarbon ages of short-chain n-fatty acids (FAs; C16, C18) reflect modern autochthonous marine and/or fresh terrestrial plant input. In contrast, extremely depleted Δ14C values (-932‰ to -979‰) of short-chain n-alkanes (C16, C18) suggest a predominant input from sedimentary rocks (petrogenic OC) or petroleum. Abundance-weighted average δ13C and Δ14C values of long-chain leaf wax lipids (C26+28+30n-FAs, C24+26+28n-alkanols, C27+29+31n-alkanes) are -29.1 ± 1.1‰ to -30.2 ± 0.3‰, and -286 ± 150‰ to -442 ± 119‰, respectively, illustrating that terrestrial OC delivery is dominated by pre-aged (∼3000-5000 14C yrs) C3 vegetation sources. A coupled carbon-isotopic mixing model, based on the bulk and compound-specific biomarker δ13C and Δ14C values, is used to partition the BS-YS sedimentary OC into three components that reflect both origins and transport processes. For all sampling sites, 31-64% is modern/contemporary OC, 24-49% is pre-aged terrestrial OC, and 7-26% is fossil OC, the latter likely derived from both physical erosion of ancient sedimentary rocks and fossil fuel sources. Pre-aged soil OC is most prominent in front of the modern and old Huanghe (Yellow River) delta (48% and 49%), and fossil OC is most significant north of the old Huanghe mouth (26%). Significant pre-aged soil contributions (33%) are also evident for sites further offshore, where transport and deposition of eolian dust supply may be important. For the three major deposition areas of the BS-YS system (Bohai Basin, sub-aqueous Huanghe delta and central south YS basin), we estimate that about 3.02 Mt/yr of refractory, plant-derived pre-aged soil OC and 0.98 Mt/yr of 14C-depleted fossil OC accumulates in surface sediments, corresponding to 35% and 11% of sediment TOC, respectively. Compared with estimates for fluxes from corresponding sources, the burial efficiency is close to 100% for pre-aged soil OC and 70% for fossil OC, implying efficient OC burial in delta and shelf environments. Re-burial of these two pools of terrigenous OC only affects carbon cycling on millennial and longer timescales respectively, and exerts little influence on the modern carbon cycle (<100 yr). Carbon isotopic compositions of source specific biomarkers are a useful tool not only for constraining OC sources and transport vectors, but also for delineating their impact on the contemporary carbon cycling in marginal sea systems.

Rhodium-catalysed syn-carboamination of alkenes via a transient directing group.

PubMed

Piou, Tiffany; Rovis, Tomislav

2015-11-05

Alkenes are the most ubiquitous prochiral functional groups--those that can be converted from achiral to chiral in a single step--that are accessible to synthetic chemists. For this reason, difunctionalization reactions of alkenes (whereby two functional groups are added to the same double bond) are particularly important, as they can be used to produce highly complex molecular architectures. Stereoselective oxidation reactions, including dihydroxylation, aminohydroxylation and halogenation, are well established methods for functionalizing alkenes. However, the intermolecular incorporation of both carbon- and nitrogen-based functionalities stereoselectively across an alkene has not been reported. Here we describe the rhodium-catalysed carboamination of alkenes at the same (syn) face of a double bond, initiated by a carbon-hydrogen activation event that uses enoxyphthalimides as the source of both the carbon and the nitrogen functionalities. The reaction methodology allows for the intermolecular, stereospecific formation of one carbon-carbon and one carbon-nitrogen bond across an alkene, which is, to our knowledge, unprecedented. The reaction design involves the in situ generation of a bidentate directing group and the use of a new cyclopentadienyl ligand to control the reactivity of rhodium. The results provide a new way of synthesizing functionalized alkenes, and should lead to the convergent and stereoselective assembly of amine-containing acyclic molecules.

Constraining the subsoil carbon source to cave-air CO2 and speleothem calcite in central Texas

NASA Astrophysics Data System (ADS)

Bergel, Shelly J.; Carlson, Peter E.; Larson, Toti E.; Wood, Chris T.; Johnson, Kathleen R.; Banner, Jay L.; Breecker, Daniel O.

2017-11-01

Canonical models for speleothem formation and the subsurface carbon cycle invoke soil respiration as the dominant carbon source. However, evidence from some karst regions suggests that belowground CO2 originates from a deeper, older source. We therefore investigated the carbon sources to central Texas caves. Drip-water chemistry of two caves in central Texas implies equilibration with calcite at CO2 concentrations (PCO2_sat) higher than the maximum CO2 concentrations observed in overlying soils. This observation suggests that CO2 is added to waters after they percolate through the soils, which requires a subsoil carbon source. We directly evaluate the carbon isotope composition of the subsoil carbon source using δ13C measurements on cave-air CO2, which we independently demonstrate has little to no contribution from host rock carbon. We do so using the oxidative ratio, OR, defined as the number of moles of O2 consumed per mole of CO2 produced during respiration. However, additional belowground processes that affect O2 and CO2 concentrations, such as gas-water exchange and/or diffusion, may also influence the measured oxidative ratio, yielding an apparent OR (ORapparent). Cave air in Natural Bridge South Cavern has ORapparent values (1.09 ± 0.06) indistinguishable from those expected for respiration alone (1.08 ± 0.06). Pore space gases from soils above the cave have lower values (ORapparent = 0.67 ± 0.05) consistent with respiration and gas transport by diffusion. The simplest explanation for these observations is that cave air in NB South is influenced by respiration in open-system bedrock fractures such that neither diffusion nor exchange with water influence the composition of the cave air. The radiocarbon activities of NB South cave-air CO2 suggest the subsoil carbon source is hundreds of years old. The calculated δ13C values of the subsoil carbon source are consistent with tree-sourced carbon (perhaps decomposing root matter), the δ13C values of which have shifted during industrialization due to changes in the δ13C values and concentrations of atmospheric CO2. Seasonal variations in PCO2_sat in most of the drip waters suggest that these waters exchange with ventilated bedrock fractures in the epikarst, implying that the subsoil CO2 source contributes carbon to speleothems.

Cross-regulation among arabinose, xylose and rhamnose utilization systems in E. coli.

PubMed

Choudhury, D; Saini, S

2018-02-01

Bacteria frequently encounter multiple sugars in their natural surroundings. While the dynamics of utilization of glucose-containing sugar mixtures have been well investigated, there are few reports addressing regulation of utilization of glucose-free mixtures particularly pentoses. These sugars comprise a considerable fraction in hemicellulose which can be converted by suitable biocatalysts to biofuels and other value-added products. Hence, understanding of transcriptional cross-regulation among different pentose sugar utilization systems is essential for successful development of industrial strains. In this work, we study mixed-sugar utilization with respect to three secondary carbon sources - arabinose, xylose and rhamnose at single-cell resolution in Escherichia coli. Our results reveal that hierarchical utilization among these systems is not strict but rather can be eliminated or reversed by altering the relative ratios of the preferred and nonpreferred sugars. Since transcriptional cross-regulation among pentose sugar systems operates through competitive binding of noncognate sugar-regulator complex, altering sugar concentrations is thought to eliminate nonspecific binding by affecting concentration of the regulator - sugar complexes. Plant biomass comprises of hexose and pentose sugar mixtures. These sugars are processed by micro-organisms to form products like biofuels, polymers etc. One of the major challenges with mixed-sugar processing by micro-organisms is hierarchical utilization of sugars due to cross-regulation among sugar systems. In this work, we discuss cross-regulation among three secondary carbon sources - arabinose, xylose and rhamnose. Our results show that cross-regulation between pentose sugars is complex with multiple layers of regulation. These aspects need to be addressed for effective design of processes to extract energy from biomass. © 2017 The Society for Applied Microbiology.

In-filled reservoirs serving as sediment archives to analyse soil organic carbon erosion - Taking a closer look at the Karoo rangelands

NASA Astrophysics Data System (ADS)

Krenz, Juliane; Greenwood, Philip; Kuhn, Brigitte; Heckrath, Goswin; Foster, Ian; Boardman, John; Meadows, Michael; Kuhn, Nikolaus

2016-04-01

The semi-arid rangelands of the Great Karoo region in South Africa, which are nowadays characterized by badlands on the foot slopes of upland areas and complex gully systems in valley bottoms, have experienced a number of environmental changes. With the settlement of European farmers in the late 18th century agricultural activities increased, leading to overgrazing which probably acted as a trigger to land degradation. As a consequence of higher water demands and shifting rainfall patterns, many dams and small reservoirs have been constructed to provide drinking water for cattle or to facilitate irrigation during dry periods. Most of these dams are now filled with sediment and many have become breached, revealing sediment archives that can be used to analyse land use changes as well as carbon erosion and deposition during the last ca. 100 years. In this ongoing project, a combination of analytical methods that include drone imagery, landscape mapping, erosion modelling and sediment analysis have been employed to trace back the sediment origin and redistribution within the catchment, setting a special focus on the carbon history. Sediment deposits from a silted-up reservoir were analysed for varying physicochemical parameters, in order to analyse erosional and depositional patterns. A sharp decrease in total carbon content with decreasing depth suggests that land degradation during and after the post-European settlement most likely triggered erosion of the relatively fertile surface soils which presumably in-filled the reservoirs. It is assumed that the carbon-rich bottom layers of the dam deposits originate from these eroded surface soils. A combination of erosion modelling and sediment analysis will be used to determine the source areas of the depositional material and might clarify the question if land degradation in the Karoo has resulted in its return from being a net sink of carbon into a net source of carbon.

Testing CO2 Sequestration in an Alkaline Soil Treated with Flue Gas Desulfurization Gypsum (FGDG)

NASA Astrophysics Data System (ADS)

Han, Y.; Tokunaga, T. K.

2012-12-01

Identifying effective and economical methods for increasing carbon storage in soils is of interest for reducing soil CO2 fluxes to the atmosphere in order to partially offset anthropogenic CO2 contributions to climate change This study investigates an alternative strategy for increasing carbon retention in soils by accelerating calcite (CaCO3) precipitation and promoting soil organic carbon (SOC) complexation on mineral surfaces. The addition of calcium ion to soils with pH > 8, often found in arid and semi-arid regions, may accelerate the slow process of calcite precipitation. Increased ionic strength from addition of a soluble Ca source also suppresses microbial activity which oxidizes SOC to gaseous CO2. Through obtaining C mass balances in soil profiles, this study is quantifying the efficiency of gypsum amendments for mitigating C losses to the atmosphere. The objective of this study is to identify conditions in which inorganic and organic C sequestration is practical in semi-arid and arid soils by gypsum treatment. As an inexpensive calcium source, we proposed to use flue gas desulfurization gypsum (FGDG), a byproduct of fossil fuel burning electric power plants. To test the hypothesis, laboratory column experiments have been conducted in calcite-buffered soil with addition of gypsum and FGDG. The results of several months of column monitoring are demonstrating that gypsum-treated soil have lowered amounts of soil organic carbon loss and increased inorganic carbon (calcite) production. The excess generation of FGDG relative to industrial and agricultural needs, FGDG, is currently regarded as waste. Thus application of FGDG application in some soils may be an effective and economical means for fixing CO2 in soil organic and inorganic carbon forms.Soil carbon cycle, with proposed increased C retention by calcite precipitation and by SOC binding onto soil mineral surfaces, with both processes driven by calcium released from gypsum dissolution.

Selective Aliphatic Carbon-Carbon Bond Activation by Rhodium Porphyrin Complexes.

PubMed

To, Ching Tat; Chan, Kin Shing

2017-07-18

The carbon-carbon bond activation of organic molecules with transition metal complexes is an attractive transformation. These reactions form transition metal-carbon bonded intermediates, which contribute to fundamental understanding in organometallic chemistry. Alternatively, the metal-carbon bond in these intermediates can be further functionalized to construct new carbon-(hetero)atom bonds. This methodology promotes the concept that the carbon-carbon bond acts as a functional group, although carbon-carbon bonds are kinetically inert. In the past few decades, numerous efforts have been made to overcome the chemo-, regio- and, more recently, stereoselectivity obstacles. The synthetic usefulness of the selective carbon-carbon bond activation has been significantly expanded and is becoming increasingly practical: this technique covers a wide range of substrate scopes and transition metals. In the past 16 years, our laboratory has shown that rhodium porphyrin complexes effectively mediate the intermolecular stoichiometric and catalytic activation of both strained and nonstrained aliphatic carbon-carbon bonds. Rhodium(II) porphyrin metalloradicals readily activate the aliphatic carbon(sp 3 )-carbon(sp 3 ) bond in TEMPO ((2,2,6,6-tetramethylpiperidin-1-yl)oxyl) and its derivatives, nitriles, nonenolizable ketones, esters, and amides to produce rhodium(III) porphyrin alkyls. Recently, the cleavage of carbon-carbon σ-bonds in unfunctionalized and noncoordinating hydrocarbons with rhodium(II) porphyrin metalloradicals has been developed. The absence of carbon-hydrogen bond activation in these systems makes the reaction unique. Furthermore, rhodium(III) porphyrin hydroxide complexes can be generated in situ to selectively activate the carbon(α)-carbon(β) bond in ethers and the carbon(CO)-carbon(α) bond in ketones under mild conditions. The addition of PPh 3 promotes the reaction rate and yield of the carbon-carbon bond activation product. Thus, both rhodium(II) porphyrin metalloradical and rhodium(III) porphyrin hydroxide are very reactive to activate the aliphatic carbon-carbon bonds. Recently, we successfully demonstrated the rhodium porphyrin catalyzed reduction or oxidation of aliphatic carbon-carbon bonds using water as the reductant or oxidant, respectively, in the absence of sacrificial reagents and neutral conditions. This Account presents our contribution in this domain. First, we describe the chemistry of equilibria among the reactive rhodium porphyrin complexes in oxidation states from Rh(I) to Rh(III). Then, we present the serendipitous discovery of the carbon-carbon bond activation reaction and subsequent developments in our laboratory. These aliphatic carbon-carbon bond activation reactions can generally be divided into two categories according to the reaction type: (i) homolytic radical substitution of a carbon(sp 3 )-carbon(sp 3 ) bond with a rhodium(II) porphyrin metalloradical and (ii) σ-bond metathesis of a carbon-carbon bond with a rhodium(III) porphyrin hydroxide. Finally, representative examples of catalytic carbon-carbon bond hydrogenation and oxidation through strategic design are covered. The progress in this area broadens the chemistry of rhodium porphyrin complexes, and these transformations are expected to find applications in organic synthesis.

40 CFR 458.45 - Standards of performance for new sources.

Code of Federal Regulations, 2010 CFR

2010-07-01

... paragraph, which may be discharged from the carbon black lamp process by a new source subject to the provisions of this subpart: There shall be no discharge of process waste water pollutants to navigable waters. ...) EFFLUENT GUIDELINES AND STANDARDS CARBON BLACK MANUFACTURING POINT SOURCE CATEGORY Carbon Black Lamp...

Growth of graphene films from non-gaseous carbon sources

DOEpatents

Tour, James; Sun, Zhengzong; Yan, Zheng; Ruan, Gedeng; Peng, Zhiwei

2015-08-04

In various embodiments, the present disclosure provides methods of forming graphene films by: (1) depositing a non-gaseous carbon source onto a catalyst surface; (2) exposing the non-gaseous carbon source to at least one gas with a flow rate; and (3) initiating the conversion of the non-gaseous carbon source to the graphene film, where the thickness of the graphene film is controllable by the gas flow rate. Additional embodiments of the present disclosure pertain to graphene films made in accordance with the methods of the present disclosure.

The influence of various carbon and nitrogen sources on oil production by Fusarium oxysporum.

PubMed

Joshi, S; Mathur, J M

1987-01-01

The oil-synthesizing capacity of Fusarium oxysporum, cultivated on basal nutrient medium, was evaluated using different carbon and nitrogen sources. In one of the media, molasses was also used as a principal carbon source. Media containing glucose and ammonium nitrate were found to be most efficient for oil production. Fatty acid profile of the fungal oil indicated the presence of a wide range of fatty acids ranging from C8 to C24. Fatty acid composition largely depends on the type of carbon and nitrogen sources.

Method for the preparation of carbon fiber from polyolefin fiber precursor

DOEpatents

Naskar, Amit Kumar; Hunt, Marcus Andrew; Saito, Tomonori

2017-11-28

Methods for the preparation of carbon fiber from polyolefin fiber precursor, wherein the polyolefin fiber precursor is partially sulfonated and then carbonized to produce carbon fiber. Methods for producing hollow carbon fibers, wherein the hollow core is circular- or complex-shaped, are also described. Methods for producing carbon fibers possessing a circular- or complex-shaped outer surface, which may be solid or hollow, are also described.

The Century-Long Challenge of Global Carbon Management

NASA Astrophysics Data System (ADS)

Socolow, R.

2002-05-01

The time scale of the global carbon management is a century, not a decade and not a millennium. A century is the ratio of 1000 billion metric tons of carbon [Gt(C)] to 10 Gt(C)/yr. 1000 Gt(C) is the future emissions that will lead to approximately a doubling of the pre-industrial atmospheric CO2 concentration, 280 ppm, assuming the total net ocean plus terrestrial sink remains at half the strength of this source - since 2.1 Gt (C) = 1 ppm, and the concentration today is already 370 ppm. Doubling is the most widely used boundary between acceptable and unacceptable Greenhouse-related environmental disruption, or, in the language of the Framework Convention on Climate Change, the onset of "dangerous anthropogenic interference with the climate system." And 10 Gt(C)/yr is a conservative estimate of the average annual fossil-fuel carbon source over the century; it is now between 6 and 7 Gt(C). Conventional oil and gas are not sufficiently abundant to generate a serious Greenhouse problem on their own. Well before their cumulative carbon emissions reach 1000 Gt(C), both are expected to become non-competitive as a result of growing costs of access (costs related to resources being very deep underground, or below very deep water, or very remote, or very small.) But several times 1000 Gt(C) of coal resources will probably be competitive with non-fossil fuel alternatives, as will "unconventional" oil and gas resources, such as tar sands. The world will not be saved from a serious Greenhouse problem by fossil fuel depletion. There are four mitigation strategies for avoiding dangerous interference with the climate system. Fossil fuels can cease to dominate the global energy system well before the end of the century, yielding large market share to some combination of renewable energy and nuclear (fission and fusion) energy sources. Fossil fuels can continue to dominate, but most of the carbon in the century's fossil fuels can be prevented from reaching the atmosphere (fossil-carbon sequestration). Carbon can be removed directly from the air by biological or chemical processes. Or the climate system can become so well understood that effective compensating actions can be implemented. If human beings implement none of these strategies, we will have chosen, in effect, to adapt to climate change. Not unlikely will be a mix of all four mitigation strategies plus adaptation. In recent years, as the intrinsic complexity and monumental scale of global carbon management has become better appreciated, new coalitions supportive of policies intended to mitigate climate change have emerged.

Simulating Carbon cycle and phenology in complex forests using a multi-layer process based ecosystem model; evaluation and use of 3D-CMCC-Forest Ecosystem Model in a deciduous and an evergreen neighboring forests, within the area of Brasschaat (Be)

NASA Astrophysics Data System (ADS)

Marconi, S.; Collalti, A.; Santini, M.; Valentini, R.

2013-12-01

3D-CMCC-Forest Ecosystem Model is a process based model formerly developed for complex forest ecosystems to estimate growth, water and carbon cycles, phenology and competition processes on a daily/monthly time scale. The Model integrates some characteristics of the functional-structural tree models with the robustness of the light use efficiency approach. It treats different heights, ages and species as discrete classes, in competition for light (vertical structure) and space (horizontal structure). The present work evaluates the results of the recently developed daily version of 3D-CMCC-FEM for two neighboring different even aged and mono specific study cases. The former is a heterogeneous Pedunculate oak forest (Quercus robur L. ), the latter a more homogeneous Scot pine forest (Pinus sylvestris L.). The multi-layer approach has been evaluated against a series of simplified versions to determine whether the improved model complexity in canopy structure definition increases its predictive ability. Results show that a more complex structure (three height layers) should be preferable to simulate heterogeneous scenarios (Pedunculate oak stand), where heights distribution within the canopy justify the distinction in dominant, dominated and sub-dominated layers. On the contrary, it seems that using a multi-layer approach for more homogeneous stands (Scot pine stand) may be disadvantageous. Forcing the structure of an homogeneous stand to a multi-layer approach may in fact increase sources of uncertainty. On the other hand forcing complex forests to a mono layer simplified model, may cause an increase in mortality and a reduction in average DBH and Height. Compared with measured CO2 flux data, model results show good ability in estimating carbon sequestration trends, on both a monthly/seasonal and daily time scales. Moreover the model simulates quite well leaf phenology and the combined effects of the two different forest stands on CO2 fluxes.

Dramatic Variability of the Carbonate System at a Temperate Coastal Ocean Site (Beaufort, North Carolina, USA) Is Regulated by Physical and Biogeochemical Processes on Multiple Timescales

PubMed Central

Johnson, Zackary I.; Wheeler, Benjamin J.; Blinebry, Sara K.; Carlson, Christina M.; Ward, Christopher S.; Hunt, Dana E.

2013-01-01

Increasing atmospheric carbon dioxide (CO2) from anthropogenic sources is acidifying marine environments resulting in potentially dramatic consequences for the physical, chemical and biological functioning of these ecosystems. If current trends continue, mean ocean pH is expected to decrease by ~0.2 units over the next ~50 years. Yet, there is also substantial temporal variability in pH and other carbon system parameters in the ocean resulting in regions that already experience change that exceeds long-term projected trends in pH. This points to short-term dynamics as an important layer of complexity on top of long-term trends. Thus, in order to predict future climate change impacts, there is a critical need to characterize the natural range and dynamics of the marine carbonate system and the mechanisms responsible for observed variability. Here, we present pH and dissolved inorganic carbon (DIC) at time intervals spanning 1 hour to >1 year from a dynamic, coastal, temperate marine system (Beaufort Inlet, Beaufort NC USA) to characterize the carbonate system at multiple time scales. Daily and seasonal variation of the carbonate system is largely driven by temperature, alkalinity and the balance between primary production and respiration, but high frequency change (hours to days) is further influenced by water mass movement (e.g. tides) and stochastic events (e.g. storms). Both annual (~0.3 units) and diurnal (~0.1 units) variability in coastal ocean acidity are similar in magnitude to 50 year projections of ocean acidity associated with increasing atmospheric CO2. The environmental variables driving these changes highlight the importance of characterizing the complete carbonate system rather than just pH. Short-term dynamics of ocean carbon parameters may already exert significant pressure on some coastal marine ecosystems with implications for ecology, biogeochemistry and evolution and this shorter term variability layers additive effects and complexity, including extreme values, on top of long-term trends in ocean acidification. PMID:24358377

Stimulation of Microbially Mediated Arsenic Release in Bangladesh Aquifers by Young Carbon Indicated by Radiocarbon Analysis of Sedimentary Bacterial Lipids.

PubMed

Whaley-Martin, K J; Mailloux, B J; van Geen, A; Bostick, B C; Silvern, R F; Kim, C; Ahmed, K M; Choudhury, I; Slater, G F

2016-07-19

The sources of reduced carbon driving the microbially mediated release of arsenic to shallow groundwater in Bangladesh remain poorly understood. Using radiocarbon analysis of phospholipid fatty acids (PLFAs) and potential carbon pools, the abundance and carbon sources of the active, sediment-associated, in situ bacterial communities inhabiting shallow aquifers (<30 m) at two sites in Araihazar, Bangladesh, were investigated. At both sites, sedimentary organic carbon (SOC) Δ(14)C signatures of -631 ± 54‰ (n = 12) were significantly depleted relative to dissolved inorganic carbon (DIC) of +24 ± 30‰ and dissolved organic carbon (DOC) of -230 ± 100‰. Sediment-associated PLFA Δ(14)C signatures (n = 10) at Site F (-167‰ to +20‰) and Site B (-163‰ to +21‰) were highly consistent and indicated utilization of carbon sources younger than the SOC, likely from the DOC pool. Sediment-associated PLFA Δ(14)C signatures were consistent with previously determined Δ(14)C signatures of microbial DNA sampled from groundwater at Site F indicating that the carbon source for these two components of the subsurface microbial community is consistent and is temporally stable over the two years between studies. These results demonstrate that the utilization of relatively young carbon sources by the subsurface microbial community occurs at sites with varying hydrology. Further they indicate that these young carbon sources drive the metabolism of the more abundant sediment-associated microbial communities that are presumably more capable of Fe reduction and associated release of As. This implies that an introduction of younger carbon to as of yet unaffected sediments (such as those comprising the deeper Pleistocene aquifer) could stimulate microbial communities and result in arsenic release.

Structure-Function, Stability, and Chemical Modification of the Cyanobacterial Cytochrome b6f Complex from Nostoc sp. PCC 7120*

PubMed Central

Baniulis, Danas; Yamashita, Eiki; Whitelegge, Julian P.; Zatsman, Anna I.; Hendrich, Michael P.; Hasan, S. Saif; Ryan, Christopher M.; Cramer, William A.

2009-01-01

The crystal structure of the cyanobacterial cytochrome b6f complex has previously been solved to 3.0-Å resolution using the thermophilic Mastigocladus laminosus whose genome has not been sequenced. Several unicellular cyanobacteria, whose genomes have been sequenced and are tractable for mutagenesis, do not yield b6f complex in an intact dimeric state with significant electron transport activity. The genome of Nostoc sp. PCC 7120 has been sequenced and is closer phylogenetically to M. laminosus than are unicellular cyanobacteria. The amino acid sequences of the large core subunits and four small peripheral subunits of Nostoc are 88 and 80% identical to those in the M. laminosus b6f complex. Purified b6f complex from Nostoc has a stable dimeric structure, eight subunits with masses similar to those of M. laminosus, and comparable electron transport activity. The crystal structure of the native b6f complex, determined to a resolution of 3.0Å (PDB id: 2ZT9), is almost identical to that of M. laminosus. Two unique aspects of the Nostoc complex are: (i) a dominant conformation of heme bp that is rotated 180° about the α- and γ-meso carbon axis relative to the orientation in the M. laminosus complex and (ii) acetylation of the Rieske iron-sulfur protein (PetC) at the N terminus, a post-translational modification unprecedented in cyanobacterial membrane and electron transport proteins, and in polypeptides of cytochrome bc complexes from any source. The high spin electronic character of the unique heme cn is similar to that previously found in the b6f complex from other sources. PMID:19189962

Structure-Function, Stability, and Chemical Modification of the Cyanobacterial Cytochrome b[subscript 6]f Complex from Nostoc sp. PCC 7120

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baniulis, Danas; Yamashita, Eiki; Whitelegge, Julian P.

2009-06-08

The crystal structure of the cyanobacterial cytochrome b{sub 6}f complex has previously been solved to 3.0-{angstrom} resolution using the thermophilic Mastigocladus laminosus whose genome has not been sequenced. Several unicellular cyanobacteria, whose genomes have been sequenced and are tractable for mutagenesis, do not yield b{sub 6}f complex in an intact dimeric state with significant electron transport activity. The genome of Nostoc sp. PCC 7120 has been sequenced and is closer phylogenetically to M. laminosus than are unicellular cyanobacteria. The amino acid sequences of the large core subunits and four small peripheral subunits of Nostoc are 88 and 80% identical tomore » those in the M. laminosus b{sub 6}f complex. Purified b{sub 6}f complex from Nostoc has a stable dimeric structure, eight subunits with masses similar to those of M. laminosus, and comparable electron transport activity. The crystal structure of the native b{sub 6}f complex, determined to a resolution of 3.0{angstrom} (PDB id: 2ZT9), is almost identical to that of M. laminosus. Two unique aspects of the Nostoc complex are: (i) a dominant conformation of heme b{sub p} that is rotated 180 deg. about the {alpha}- and {gamma}-meso carbon axis relative to the orientation in the M. laminosus complex and (ii) acetylation of the Rieske iron-sulfur protein (PetC) at the N terminus, a post-translational modification unprecedented in cyanobacterial membrane and electron transport proteins, and in polypeptides of cytochrome bc complexes from any source. The high spin electronic character of the unique heme cn is similar to that previously found in the b{sub 6}f complex from other sources.« less

Methane-derived authigenic carbonates along the North Anatolian fault system in the Sea of Marmara (Turkey)

NASA Astrophysics Data System (ADS)

Crémière, Antoine; Pierre, Catherine; Blanc-Valleron, Marie-Madeleine; Zitter, Tiphaine; Çağatay, M. Namik; Henry, Pierre

2012-08-01

The Marnaut cruise (May-June 2007) investigated the submerged part of the North Anatolian fault system, an active tectonic area in the Sea of Marmara. Already known and new fluid venting sites along the fault system were visited by submersible diving. Cold seeps present a considerable diversity of geochemical background associated with occurrences of authigenic carbonate crusts outcropping at the seafloor. Buried carbonate concretions were also recovered by coring within the sediments of the Tekirdağ Basin and of the Western-High ridge that separates the Tekirdağ and Central Basins. Interestingly, numerous of these early diagenetic carbonates were found within the transitional sediments from lacustrine to marine environment deposited after the late glacial maximum. The authigenic carbonates are mainly composed of aragonite, Mg-calcite and minor amounts of dolomite, and are often associated with pyrite and barite. The carbon isotopic compositions of carbonates present a wide range of values from -50.6‰ to +14.2‰ V-PDB indicating different diagenetic settings and complex mixtures of dissolved inorganic carbon from different sources. The low δ13C values of the seafloor crusts and of most buried concretions indicate that the carbon source was a mixture of microbial and thermogenic methane and possibly other hydrocarbons that were oxidized by anaerobic microbial processes. The positive δ13C values of a few buried concretions from the Western-High ridge reflect the mineralization of heavy CO2, which is thought to represent the residual by-product of oil biodegradation in a subsurface petroleum reservoir that migrated up with brines. Most of the oxygen isotopic compositions of seafloor carbonates are close to the isotopic equilibrium with the present-day bottom water conditions but a few values as low as -1.9‰ V-PDB indicate precipitation from brackish waters. In buried carbonate concretions, δ18O values as high as +4.9‰ V-PDB reflect the contribution of water enriched in 18O. The results support the hypothesis that after the late glacial/Holocene transition, precipitation of authigenic carbonates, now buried within the sediments of the Western-High mound structures, was promoted due to enhancement of anaerobic oxidation of methane, possibly from massive methane release by gas hydrate dissociation, and by sulfate rich Mediterranean water incursion.

Denitrification-Efficiencies of Alternate Carbon Sources

DTIC Science & Technology

1984-07-01

carbon source evaluated, while sweet whey, corn steep liquor , acid whey and soluble potato solids followed in order of decreasing efficiency. Three of...denitrification and total organic carbon removal with ’I. sweet whey 11 3. Percent denitrification and total organic carbon removal with corn steep liquor ...and total organic carbon removal with hydrolyzed sludge 18 10. Percent denitrification and total organic carbon removal with fish stick 19 11

Recent developments of ion sources for life-science studies at the Heavy Ion Medical Accelerator in Chiba (invited)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kitagawa, A.; Drentje, A. G.; Fujita, T.

With about 1000-h of relativistic high-energy ion beams provided by Heavy Ion Medical Accelerator in Chiba, about 70 users are performing various biology experiments every year. A rich variety of ion species from hydrogen to xenon ions with a dose rate of several Gy/min is available. Carbon, iron, silicon, helium, neon, argon, hydrogen, and oxygen ions were utilized between 2012 and 2014. Presently, three electron cyclotron resonance ion sources (ECRISs) and one Penning ion source are available. Especially, the two frequency heating techniques have improved the performance of an 18 GHz ECRIS. The results have satisfied most requirements for life-sciencemore » studies. In addition, this improved performance has realized a feasible solution for similar biology experiments with a hospital-specified accelerator complex.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kitagawa, A.; Fujita, T.; Goto, A.

The National Institute of Radiological Sciences (NIRS) maintains various ion accelerators in order to study the effects of radiation of the human body and medical uses of radiation. Two electrostatic tandem accelerators and three cyclotrons delivered by commercial companies have offered various life science tools; these include proton-induced x-ray emission analysis (PIXE), micro beam irradiation, neutron exposure, and radioisotope tracers and probes. A duoplasmatron, a multicusp ion source, a penning ion source (PIG), and an electron cyclotron resonance ion source (ECRIS) are in operation for these purposes. The Heavy-Ion Medical Accelerator in Chiba (HIMAC) is an accelerator complex for heavy-ionmore » radiotherapy, fully developed by NIRS. HIMAC is utilized not only for daily treatment with the carbon beam but also for fundamental experiments. Several ECRISs and a PIG at HIMAC satisfy various research and clinical requirements.« less

The big data-big model (BDBM) challenges in ecological research

NASA Astrophysics Data System (ADS)

Luo, Y.

2015-12-01

The field of ecology has become a big-data science in the past decades due to development of new sensors used in numerous studies in the ecological community. Many sensor networks have been established to collect data. For example, satellites, such as Terra and OCO-2 among others, have collected data relevant on global carbon cycle. Thousands of field manipulative experiments have been conducted to examine feedback of terrestrial carbon cycle to global changes. Networks of observations, such as FLUXNET, have measured land processes. In particular, the implementation of the National Ecological Observatory Network (NEON), which is designed to network different kinds of sensors at many locations over the nation, will generate large volumes of ecological data every day. The raw data from sensors from those networks offer an unprecedented opportunity for accelerating advances in our knowledge of ecological processes, educating teachers and students, supporting decision-making, testing ecological theory, and forecasting changes in ecosystem services. Currently, ecologists do not have the infrastructure in place to synthesize massive yet heterogeneous data into resources for decision support. It is urgent to develop an ecological forecasting system that can make the best use of multiple sources of data to assess long-term biosphere change and anticipate future states of ecosystem services at regional and continental scales. Forecasting relies on big models that describe major processes that underlie complex system dynamics. Ecological system models, despite great simplification of the real systems, are still complex in order to address real-world problems. For example, Community Land Model (CLM) incorporates thousands of processes related to energy balance, hydrology, and biogeochemistry. Integration of massive data from multiple big data sources with complex models has to tackle Big Data-Big Model (BDBM) challenges. Those challenges include interoperability of multiple, heterogeneous data sets; intractability of structural complexity of big models; equifinality of model structure selection and parameter estimation; and computational demand of global optimization with Big Models.

Isolation and characterization of a hydrocarbonoclastic bacterial enrichment from total petroleum hydrocarbon contaminated sediments: potential candidates for bioaugmentation in bio-based processes.

PubMed

Di Gregorio, Simona; Siracusa, Giovanna; Becarelli, Simone; Mariotti, Lorenzo; Gentini, Alessandro; Lorenzi, Roberto

2016-06-01

Seven hydrocarbonoclastic new bacterial isolates were isolated from dredged sediments of a river estuary in Italy. The sediments were contaminated by shipyard activities since decades, mainly ascribable to the exploitation of diesel oil as the fuel for recreational and commercial navigation of watercrafts. The bacterial isolates were able to utilize diesel oil as sole carbon source. Their metabolic capacities were evaluated by GC-MS analysis, with reference to the depletion of both the normal and branched alkanes, the nC18 fatty acid methyl ester and the unresolved complex mixture of organic compounds. They were taxonomically identified as different species of Stenotrophomonas and Pseudomonas spp. by the combination of amplified ribosomal DNA restriction analysis (ARDRA) and repetitive sequence-based PCR (REP-PCR) analysis. The metabolic activities of interest were analyzed both in relation to the single bacterial strains and to the combination of the latter as a multibacterial species system. After 6 days of incubation in mineral medium with diesel oil as sole carbon source, the Stenotrophomonas sp. M1 strain depleted 43-46 % of Cn-alkane from C28 up to C30, 70 % of the nC18 fatty acid methyl ester and the 46 % of the unresolved complex mixture of organic compounds. On the other hand, the Pseudomonas sp. NM1 strain depleted the 76 % of the nC18 fatty acid methyl ester, the 50 % of the unresolved complex mixture of organic compounds. The bacterial multispecies system was able to completely deplete Cn-alkane from C28 up to C30 and to deplete the 95 % of the unresolved complex mixture of organic compounds. The isolates, either as single strains and as a bacterial multispecies system, were proposed as candidates for bioaugmentation in bio-based processes for the decontamination of dredged sediments.

Dynamic Balancing of Isoprene Carbon Sources Reflects Photosynthetic and Photorespiratory Responses to Temperature Stress1[W][OPEN

PubMed Central

Chambers, Jeffrey; Alves, Eliane G.; Teixeira, Andrea; Garcia, Sabrina; Holm, Jennifer; Higuchi, Niro; Manzi, Antonio; Abrell, Leif; Fuentes, Jose D.; Nielsen, Lars K.; Torn, Margaret S.; Vickers, Claudia E.

2014-01-01

The volatile gas isoprene is emitted in teragrams per annum quantities from the terrestrial biosphere and exerts a large effect on atmospheric chemistry. Isoprene is made primarily from recently fixed photosynthate; however, alternate carbon sources play an important role, particularly when photosynthate is limiting. We examined the relative contribution of these alternate carbon sources under changes in light and temperature, the two environmental conditions that have the strongest influence over isoprene emission. Using a novel real-time analytical approach that allowed us to examine dynamic changes in carbon sources, we observed that relative contributions do not change as a function of light intensity. We found that the classical uncoupling of isoprene emission from net photosynthesis at elevated leaf temperatures is associated with an increased contribution of alternate carbon. We also observed a rapid compensatory response where alternate carbon sources compensated for transient decreases in recently fixed carbon during thermal ramping, thereby maintaining overall increases in isoprene production rates at high temperatures. Photorespiration is known to contribute to the decline in net photosynthesis at high leaf temperatures. A reduction in the temperature at which the contribution of alternate carbon sources increased was observed under photorespiratory conditions, while photosynthetic conditions increased this temperature. Feeding [2-13C]glycine (a photorespiratory intermediate) stimulated emissions of [13C1–5]isoprene and 13CO2, supporting the possibility that photorespiration can provide an alternate source of carbon for isoprene synthesis. Our observations have important implications for establishing improved mechanistic predictions of isoprene emissions and primary carbon metabolism, particularly under the predicted increases in future global temperatures. PMID:25318937

Dynamic balancing of isoprene carbon sources reflects photosynthetic and photorespiratory responses to temperature stress.

PubMed

Jardine, Kolby; Chambers, Jeffrey; Alves, Eliane G; Teixeira, Andrea; Garcia, Sabrina; Holm, Jennifer; Higuchi, Niro; Manzi, Antonio; Abrell, Leif; Fuentes, Jose D; Nielsen, Lars K; Torn, Margaret S; Vickers, Claudia E

2014-12-01

The volatile gas isoprene is emitted in teragrams per annum quantities from the terrestrial biosphere and exerts a large effect on atmospheric chemistry. Isoprene is made primarily from recently fixed photosynthate; however, alternate carbon sources play an important role, particularly when photosynthate is limiting. We examined the relative contribution of these alternate carbon sources under changes in light and temperature, the two environmental conditions that have the strongest influence over isoprene emission. Using a novel real-time analytical approach that allowed us to examine dynamic changes in carbon sources, we observed that relative contributions do not change as a function of light intensity. We found that the classical uncoupling of isoprene emission from net photosynthesis at elevated leaf temperatures is associated with an increased contribution of alternate carbon. We also observed a rapid compensatory response where alternate carbon sources compensated for transient decreases in recently fixed carbon during thermal ramping, thereby maintaining overall increases in isoprene production rates at high temperatures. Photorespiration is known to contribute to the decline in net photosynthesis at high leaf temperatures. A reduction in the temperature at which the contribution of alternate carbon sources increased was observed under photorespiratory conditions, while photosynthetic conditions increased this temperature. Feeding [2-(13)C]glycine (a photorespiratory intermediate) stimulated emissions of [(13)C1-5]isoprene and (13)CO2, supporting the possibility that photorespiration can provide an alternate source of carbon for isoprene synthesis. Our observations have important implications for establishing improved mechanistic predictions of isoprene emissions and primary carbon metabolism, particularly under the predicted increases in future global temperatures. © 2014 American Society of Plant Biologists. All Rights Reserved.

Experimental Assessment of Carbon Isotopes of Light Hydrocarbons under Different Redox Conditions

NASA Astrophysics Data System (ADS)

Fu, Q.; Chen, X.

2017-12-01

Hydrocarbons can be derived from a variety of carbon sources, by different processes, and under a wide range of physicochemical conditions. Other than bacterial activities facilitating biogenic hydrocarbon formation at low temperatures, decomposition of complex organic matter in sedimentary rocks at elevated temperatures produce thermogenic hydrocarbons, whereas abiogenic hydrocarbons are mainly generated through Fischer-Tropsch type synthesis with mineral catalysts. The carbon isotope has been used extensively to distinguish hydrocarbons of different origins and their formation conditions. For each type of hydrocarbons, however, environmental conditions may change reaction pathways and corresponding isotope fractionations. To better understand the variation of carbon isotopes caused by environmental variables, mineral constraints in particular, a series of laboratory experiments are conducted. In experiments where thermogenic hydrocarbons are formed, oil shale is the source material with different gypsum contents (0, 0.3, 0.5, and 1 wt.%). The abundance of generated light straight chain hydrocarbons decreases with increasing gypsum content, but their carbon isotopes become heavier. For example, the δ13C value of methane increases from -55.1‰ to -41.4‰ with gypsum varying between 0 and 1 wt.%. In similar experiments with the presence of MnO2, carbon isotope values of light alkanes are also higher, but with limited magnitudes (e.g., 3 to 4‰ for methane). In another experiment with dissolved H2 gas of 100 mmol/kg, light alkanes become depleted in 13C than experiments without H2. For example, there is a depletion of 2.7‰ for methane. The variation of carbon isotope values of light alkanes suggests the redox condition, constrained by mineral assemblage, fluid composition, and physical environment, play an important role in isotope fractionation. The pathway of hydrocarbon generation may be different under oxidized or reducing conditions. A set of experiments, in which abiogenic hydrocarbons are formed, is currently in progress. Combined together, they would facilitate our understanding of carbon isotope fractionation under geological conditions, and effective use of carbon isotopes as a diagnostic tool for hydrocarbons that are poorly understood in terms of origin and evolution.

Resolution of the carbon contamination problem in ion irradiation experiments

NASA Astrophysics Data System (ADS)

Was, G. S.; Taller, S.; Jiao, Z.; Monterrosa, A. M.; Woodley, D.; Jennings, D.; Kubley, T.; Naab, F.; Toader, O.; Uberseder, E.

2017-12-01

The widely experienced problem of carbon uptake in samples during ion irradiation was systematically investigated to identify the source of carbon and to develop mitigation techniques. Possible sources of carbon included carbon ions or neutrals incorporated into the ion beam, hydrocarbons in the vacuum system, and carbon species on the sample and fixture surfaces. Secondary ion mass spectrometry, atom probe tomography, elastic backscattering spectrometry, and principally, nuclear reaction analysis, were used to profile carbon in a variety of substrates prior to and following irradiation with Fe2+ ions at high temperature. Ion irradiation of high purity Si and Ni, and also of alloy 800H coated with a thin film of alumina eliminated the ion beam as the source of carbon. Hydrocarbons in the vacuum and/or on the sample and fixtures was the source of the carbon that became incorporated into the samples during irradiation. Plasma cleaning of the sample and sample stage, and incorporation of a liquid nitrogen cold trap both individually and especially in combination, completely eliminated the uptake of carbon during heavy ion irradiation. While less convenient, coating the sample with a thin film of alumina was also effective in eliminating carbon incorporation.

Agenda and Meeting Summary from Final Workshop on Arctic Black Carbon: Reduction of Black Carbon from Diesel Sources

EPA Pesticide Factsheets

The U.S. Environmental Protection Agency, Battelle Memorial Institute and WWF-Russia organized the final workshop on Arctic Black Carbon: Reduction of Black Carbon from Diesel Sources on November 5, 2014 in Murmansk, Russia.

Agenda and Meeting Summary from Best Practices Training on Arctic Black Carbon: Reduction of Black Carbon from Diesel Sources

EPA Pesticide Factsheets

From April 15-19, 2013, EPA's partners hosted the Best Practices Training on Arctic Black Carbon: Reduction of Black Carbon from Diesel Sources in Murmansk, Russia. Over the course of this event, participants:

Hypothetical Modeling of Redox Conditions Within a Complex Ground-Water Flow Field in a Glacial Setting

USGS Publications Warehouse

Feinstein, Daniel T.; Thomas, Mary Ann

2009-01-01

This report describes a modeling approach for studying how redox conditions evolve under the influence of a complex ground-water flow field. The distribution of redox conditions within a flow system is of interest because of the intrinsic susceptibility of an aquifer to redox-sensitive, naturally occurring contaminants - such as arsenic - as well as anthropogenic contaminants - such as chlorinated solvents. The MODFLOW-MT3D-RT3D suite of code was applied to a glacial valley-fill aquifer to demonstrate a method for testing the interaction of flow patterns, sources of reactive organic carbon, and availability of electron acceptors in controlling redox conditions. Modeling results show how three hypothetical distributions of organic carbon influence the development of redox conditions in a water-supply aquifer. The distribution of strongly reduced water depends on the balance between the rate of redox reactions and the capability of different parts of the flow system to transmit oxygenated water. The method can take account of changes in the flow system induced by pumping that result in a new distribution of reduced water.

Sources of dissolved and particulate organic material in Loch Vale Watershed, Rocky Mountain National Park, Colorado, USA

USGS Publications Warehouse

Baron, Jill S.; McKnight, Diane M.; Denning, A. Scott

1991-01-01

The sources of both dissolved organic carbon (DOC) and particulate organic carbon (POC) to an alpine (Sky Pond) and a subalpine lake (The Loch) in Rocky Mountain National Park were explored for four years. The importance of both autochthonous and allochthonous sources of organic matter differ, not only between alpine and subalpine locations, but also seasonally. Overall, autochthonous sources dominate the organic carbon of the alpine lake, while allochthonous sources are a more significant source of organic carbon to the subalpine lake. In the alpine lake, Sky Pond, POC makes up greater than one third of the total organic matter content of the water column, and is related to phytoplankton abundance. Dissolved organic carbon is a product of within-lake activity in Sky Pond except during spring snowmelt and early summer (May–July), when stable carbon isotope ratios suggest a terrestrial source. In the subalpine lake, The Loch, DOC is a much more important constituent of water column organic material than POC, comprising greater than 90% of the spring snowmelt organic matter, and greater than 75% of the organic matter over the rest of the year. Stable carbon isotope ratios and a very strong relation of DOC with soluble Al(tot) indicate DOC concentrations are almost entirely related to flushing of soil water from the surrounding watershed during spring snowmelt. Stable carbon isotope ratios indicate that, for both lakes, phytoplankton is an important source of DOC in the winter, while terrestrial material of plant or microbial origin contributes DOC during snowmelt and summer.

The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry

PubMed Central

Rineau, Francois; Roth, Doris; Shah, Firoz; Smits, Mark; Johansson, Tomas; Canbäck, Björn; Olsen, Peter Bjarke; Persson, Per; Grell, Morten Nedergaard; Lindquist, Erika; Grigoriev, Igor V; Lange, Lene; Tunlid, Anders

2012-01-01

Soils in boreal forests contain large stocks of carbon. Plants are the main source of this carbon through tissue residues and root exudates. A major part of the exudates are allocated to symbiotic ectomycorrhizal fungi. In return, the plant receives nutrients, in particular nitrogen from the mycorrhizal fungi. To capture the nitrogen, the fungi must at least partly disrupt the recalcitrant organic matter–protein complexes within which the nitrogen is embedded. This disruption process is poorly characterized. We used spectroscopic analyses and transcriptome profiling to examine the mechanism by which the ectomycorrhizal fungus Paxillus involutus degrades organic matter when acquiring nitrogen from plant litter. The fungus partially degraded polysaccharides and modified the structure of polyphenols. The observed chemical changes were consistent with a hydroxyl radical attack, involving Fenton chemistry similar to that of brown-rot fungi. The set of enzymes expressed by Pa. involutus during the degradation of the organic matter was similar to the set of enzymes involved in the oxidative degradation of wood by brown-rot fungi. However, Pa. involutus lacked transcripts encoding extracellular enzymes needed for metabolizing the released carbon. The saprotrophic activity has been reduced to a radical-based biodegradation system that can efficiently disrupt the organic matter–protein complexes and thereby mobilize the entrapped nutrients. We suggest that the released carbon then becomes available for further degradation and assimilation by commensal microbes, and that these activities have been lost in ectomycorrhizal fungi as an adaptation to symbiotic growth on host photosynthate. The interdependence of ectomycorrhizal symbionts and saprophytic microbes would provide a key link in the turnover of nutrients and carbon in forest ecosystems. PMID:22469289

Soil organic carbon dynamics jointly controlled by climate, carbon inputs, soil properties and soil carbon fractions.

PubMed

Luo, Zhongkui; Feng, Wenting; Luo, Yiqi; Baldock, Jeff; Wang, Enli

2017-10-01

Soil organic carbon (SOC) dynamics are regulated by the complex interplay of climatic, edaphic and biotic conditions. However, the interrelation of SOC and these drivers and their potential connection networks are rarely assessed quantitatively. Using observations of SOC dynamics with detailed soil properties from 90 field trials at 28 sites under different agroecosystems across the Australian cropping regions, we investigated the direct and indirect effects of climate, soil properties, carbon (C) inputs and soil C pools (a total of 17 variables) on SOC change rate (r C , Mg C ha -1  yr -1 ). Among these variables, we found that the most influential variables on r C were the average C input amount and annual precipitation, and the total SOC stock at the beginning of the trials. Overall, C inputs (including C input amount and pasture frequency in the crop rotation system) accounted for 27% of the relative influence on r C , followed by climate 25% (including precipitation and temperature), soil C pools 24% (including pool size and composition) and soil properties (such as cation exchange capacity, clay content, bulk density) 24%. Path analysis identified a network of intercorrelations of climate, soil properties, C inputs and soil C pools in determining r C . The direct correlation of r C with climate was significantly weakened if removing the effects of soil properties and C pools, and vice versa. These results reveal the relative importance of climate, soil properties, C inputs and C pools and their complex interconnections in regulating SOC dynamics. Ignorance of the impact of changes in soil properties, C pool composition and C input (quantity and quality) on SOC dynamics is likely one of the main sources of uncertainty in SOC predictions from the process-based SOC models. © 2017 John Wiley & Sons Ltd.

Diversity in C-Xanes Spectra Obtained from Carbonaceous Solid Inclusions from Monahans Halite

NASA Technical Reports Server (NTRS)

Kebukawa, Y.; Zolensky, M. E.; Fries, M.; Kilcoyne, A. L. D.; Rahman, Z.; Cody, G. D.

2014-01-01

Monahans meteorite (H5) contains fluid inclusion- bearing halite (NaCl) crystals [1]. Microthermometry and Raman spectroscopy showed that the fluid in the inclusions is an aqueous brine and they were trapped near 25degC [1]. Their continued presence in the halite grains requires that their incorporation into the H chondrite asteroid was post metamorphism [2]. Abundant solid inclusions are also present in the halites. The solid inclusions include abundant and widely variable organics [2]. Analyses by Raman microprobe, SEM/EDX, synchrotron X-ray diffraction and TEM reveal that these grains include macromolecular carbon similar in structure to CV3 chondrite matrix carbon, aliphatic carbon compounds, olivine (Fo99-59), high- and low-Ca pyroxene, feldspars, magnetite, sulfides, lepidocrocite, carbonates, diamond, apatite and possibly the zeolite phillipsite [3]. Here we report organic analyses of these carbonaceous residues in Monahans halite using C-, N-, and O- X-ray absorption near edge structure (XANES). Samples and Methods: Approximately 100 nm-thick sections were extracted with a focused ion beam (FIB) at JSC from solid inclusions from Monahans halite. The sections were analyzed using the scanning transmission X-ray microscope (STXM) on beamline 5.3.2.2 at the Advanced Light Source, Lawrence Berkeley National Laboratory for XANES spectroscopy. Results and Discussion: C-XANES spectra of the solid inclusions show micrometer-scale heterogeneity, indicating that the macromolecular carbon in the inclusions have complex chemical variations. C-XANES features include 284.7 eV assigned to aromatic C=C, 288.4-288.8 eV assigned to carboxyl, and 290.6 eV assigned to carbonate. The carbonyl features obtained by CXANES might have been caused by the FIB used in sample preparation. No specific N-XANES features are observed. The CXANES spectra obtained from several areas in the FIB sections include type 1&2 chondritic IOM like, type 3 chondritic IOM like, and none of the above. The natures of the macromolecular carbon in the solid inclusions observed by C-XANES are consistent with the previous studies showing that the carbonaceous solid inclusions have not originated from Monahans parent body [1-3], and have various origins, including various chondritic meteorite parent bodies as well as other unknown source(s).

Abundant carbon in the mantle beneath Hawai`i

USGS Publications Warehouse

Anderson, Kyle R.; Poland, Michael

2017-01-01

Estimates of carbon concentrations in Earth’s mantle vary over more than an order of magnitude, hindering our ability to understand mantle structure and mineralogy, partial melting, and the carbon cycle. CO2 concentrations in mantle-derived magmas supplying hotspot ocean island volcanoes yield our most direct constraints on mantle carbon, but are extensively modified by degassing during ascent. Here we show that undegassed magmatic and mantle carbon concentrations may be estimated in a Bayesian framework using diverse geologic information at an ocean island volcano. Our CO2 concentration estimates do not rely upon complex degassing models, geochemical tracer elements, assumed magma supply rates, or rare undegassed rock samples. Rather, we couple volcanic CO2 emission rates with probabilistic magma supply rates, which are obtained indirectly from magma storage and eruption rates. We estimate that the CO2content of mantle-derived magma supplying Hawai‘i’s active volcanoes is 0.97−0.19+0.25 wt%—roughly 40% higher than previously believed—and is supplied from a mantle source region with a carbon concentration of 263−62+81 ppm. Our results suggest that mantle plumes and ocean island basalts are carbon-rich. Our data also shed light on helium isotope abundances, CO2/Nb ratios, and may imply higher CO2 emission rates from ocean island volcanoes.

Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms

NASA Astrophysics Data System (ADS)

McQuaid, Jeffrey B.; Kustka, Adam B.; Oborník, Miroslav; Horák, Aleš; McCrow, John P.; Karas, Bogumil J.; Zheng, Hong; Kindeberg, Theodor; Andersson, Andreas J.; Barbeau, Katherine A.; Allen, Andrew E.

2018-03-01

In vast areas of the ocean, the scarcity of iron controls the growth and productivity of phytoplankton. Although most dissolved iron in the marine environment is complexed with organic molecules, picomolar amounts of labile inorganic iron species (labile iron) are maintained within the euphotic zone and serve as an important source of iron for eukaryotic phytoplankton and particularly for diatoms. Genome-enabled studies of labile iron utilization by diatoms have previously revealed novel iron-responsive transcripts, including the ferric iron-concentrating protein ISIP2A, but the mechanism behind the acquisition of picomolar labile iron remains unknown. Here we show that ISIP2A is a phytotransferrin that independently and convergently evolved carbonate ion-coordinated ferric iron binding. Deletion of ISIP2A disrupts high-affinity iron uptake in the diatom Phaeodactylum tricornutum, and uptake is restored by complementation with human transferrin. ISIP2A is internalized by endocytosis, and manipulation of the seawater carbonic acid system reveals a second-order dependence on the concentrations of labile iron and carbonate ions. In P. tricornutum, the synergistic interaction of labile iron and carbonate ions occurs at environmentally relevant concentrations, revealing that carbonate availability co-limits iron uptake. Phytotransferrin sequences have a broad taxonomic distribution and are abundant in marine environmental genomic datasets, suggesting that acidification-driven declines in the concentration of seawater carbonate ions will have a negative effect on this globally important eukaryotic iron acquisition mechanism.

A local proton source enhances CO2 electroreduction to CO by a molecular Fe catalyst.

PubMed

Costentin, Cyrille; Drouet, Samuel; Robert, Marc; Savéant, Jean-Michel

2012-10-05

Electrochemical conversion of carbon dioxide (CO(2)) to carbon monoxide (CO) is a potentially useful step in the desirable transformation of the greenhouse gas to fuels and commodity chemicals. We have found that modification of iron tetraphenylporphyrin through the introduction of phenolic groups in all ortho and ortho' positions of the phenyl groups considerably speeds up catalysis of this reaction by the electrogenerated iron(0) complex. The catalyst, which uses one of the most earth-abundant metals, manifests a CO faradaic yield above 90% through 50 million turnovers over 4 hours of electrolysis at low overpotential (0.465 volt), with no observed degradation. The basis for the enhanced activity appears to be the high local concentration of protons associated with the phenolic hydroxyl substituents.

Chemical compositions and source identification of PM₂.₅ aerosols for estimation of a diesel source surrogate.

PubMed

Sahu, Manoranjan; Hu, Shaohua; Ryan, Patrick H; Le Masters, Grace; Grinshpun, Sergey A; Chow, Judith C; Biswas, Pratim

2011-06-01

Exposure to traffic-related pollution during childhood has been associated with asthma exacerbation, and asthma incidence. The objective of the Cincinnati Childhood Allergy and Air Pollution Study (CCAAPS) is to determine if the development of allergic and respiratory disease is associated with exposure to diesel engine exhaust particles. A detailed receptor model analyses was undertaken by applying positive matrix factorization (PMF) and UNMIX receptor models to two PM₂.₅ data sets: one consisting of two carbon fractions and the other of eight temperature-resolved carbon fractions. Based on the source profiles resolved from the analyses, markers of traffic-related air pollution were estimated: the elemental carbon attributed to traffic (ECAT) and elemental carbon attributed to diesel vehicle emission (ECAD). Application of UNMIX to the two data sets generated four source factors: combustion related sulfate, traffic, metal processing and soil/crustal. The PMF application generated six source factors derived from analyzing two carbon fractions and seven factors from temperature-resolved eight carbon fractions. The source factors (with source contribution estimates by mass concentrations in parentheses) are: combustion sulfate (46.8%), vegetative burning (15.8%), secondary sulfate (12.9%), diesel vehicle emission (10.9%), metal processing (7.5%), gasoline vehicle emission (5.6%) and soil/crustal (0.7%). Diesel and gasoline vehicle emission sources were separated using eight temperature-resolved organic and elemental carbon fractions. Application of PMF to both datasets also differentiated the sulfate rich source from the vegetative burning source, which are combined in a single factor by UNMIX modeling. Calculated ECAT and ECAD values at different locations indicated that traffic source impacts depend on factors such as traffic volumes, meteorological parameters, and the mode of vehicle operation apart from the proximity of the sites to highways. The difference in ECAT and ECAD, however, was less than one standard deviation. Thus, a cost benefit consideration should be used when deciding on the benefits of an eight or two carbon approach. Published by Elsevier B.V.

Improved artificial saliva for studying the cariogenic effect of carbohydrates.

PubMed

Björklund, Marika; Ouwehand, Arthur C; Forssten, Sofia D

2011-07-01

Saliva is a complex fluid that possesses many important functions regarding oral health. Many in vitro studies require relatively large quantities of saliva. While natural saliva would be the material of choice, it is difficult to obtain in sufficient quantities and varies in composition. Substitutes mimicking the physicochemical properties of saliva have been developed, but these are not appropriate to study the growth of mutans streptococci. Brain Heart Infusion (BHI) has been commonly used for this, but this medium is richer in nutrients than saliva. We therefore developed artificial saliva (AS) with nutrient levels resembling those in natural saliva as a substitute for natural human saliva (HS) to study the influence of different carbon sources on mutans streptococci growth. Growth of a wild-type Streptococcus mutans strain and S. mutans ATCC 15175 in BHI, HS, and AS was monitored anaerobically. Growth of S. mutans in the modified AS was very similar to the growth in HS, both in the absence and presence of different carbon sources. We therefore conclude that the developed AS is suitable for in vitro tests on S. mutans growth.