Limitation of the Cavitron technique by conifer pit aspiration.

PubMed

Beikircher, B; Ameglio, T; Cochard, H; Mayr, S

2010-07-01

The Cavitron technique facilitates time and material saving for vulnerability analysis. The use of rotors with small diameters leads to high water pressure gradients (DeltaP) across samples, which may cause pit aspiration in conifers. In this study, the effect of pit aspiration on Cavitron measurements was analysed and a modified 'conifer method' was tested which avoids critical (i.e. pit aspiration inducing) DeltaP. Four conifer species were used (Juniperus communis, Picea abies, Pinus sylvestris, and Larix decidua) for vulnerability analysis based on the standard Cavitron technique and the conifer method. In addition, DeltaP thresholds for pit aspiration were determined and water extraction curves were constructed. Vulnerability curves obtained with the standard method showed generally a less negative P for the induction of embolism than curves of the conifer method. Differences were species-specific with the smallest effects in Juniperus. Larix showed the most pronounced shifts in P(50) (pressure at 50% loss of conductivity) between the standard (-1.5 MPa) and the conifer (-3.5 MPa) methods. Pit aspiration occurred at the lowest DeltaP in Larix and at the highest in Juniperus. Accordingly, at a spinning velocity inducing P(50), DeltaP caused only a 4% loss of conductivity induced by pit aspiration in Juniperus, but about 60% in Larix. Water extraction curves were similar to vulnerability curves indicating that spinning itself did not affect pits. Conifer pit aspiration can have major influences on Cavitron measurements and lead to an overestimation of vulnerability thresholds when a small rotor is used. Thus, the conifer method presented here enables correct vulnerability analysis by avoiding artificial conductivity losses.

Vulnerability to forest loss through altered postfire recovery dynamics in a warming climate in the Klamath Mountains.

PubMed

Tepley, Alan J; Thompson, Jonathan R; Epstein, Howard E; Anderson-Teixeira, Kristina J

2017-10-01

In the context of ongoing climatic warming, certain landscapes could be near a tipping point where relatively small changes to their fire regimes or their postfire forest recovery dynamics could bring about extensive forest loss, with associated effects on biodiversity and carbon-cycle feedbacks to climate change. Such concerns are particularly valid in the Klamath Region of northern California and southwestern Oregon, where severe fire initially converts montane conifer forests to systems dominated by broadleaf trees and shrubs. Conifers eventually overtop the competing vegetation, but until they do, these systems could be perpetuated by a cycle of reburning. To assess the vulnerability of conifer forests to increased fire activity and altered forest recovery dynamics in a warmer, drier climate, we characterized vegetation dynamics following severe fire in nine fire years over the last three decades across the climatic aridity gradient of montane conifer forests. Postfire conifer recruitment was limited to a narrow window, with 89% of recruitment in the first 4 years, and height growth tended to decrease as the lag between the fire year and the recruitment year increased. Growth reductions at longer lags were more pronounced at drier sites, where conifers comprised a smaller portion of live woody biomass. An interaction between seed-source availability and climatic aridity drove substantial variation in the density of regenerating conifers. With increasing climatic water deficit, higher propagule pressure (i.e., smaller patch sizes for high-severity fire) was needed to support a given conifer seedling density, which implies that projected future increases in aridity could limit postfire regeneration across a growing portion of the landscape. Under a more severe prospective warming scenario, by the end of the century more than half of the area currently capable of supporting montane conifer forest could become subject to minimal conifer regeneration in even moderate-sized (10s of ha) high-severity patches. © 2017 John Wiley & Sons Ltd.

Ungulate exclusion, conifer thinning and mule deer forage in northeastern New Mexico

USGS Publications Warehouse

Kramer, David W.; Sorensen, Grant E.; Taylor, Chase A.; Cox, Robert D.; Gipson, Philip S.; Cain, James W.

2015-01-01

The southwestern United States has experienced expansion of conifer species (Juniperus spp. and Pinus ponderosa) into areas of semi-arid grassland over the past century. The expansion of conifers can limit palatable forage and reduce grass and forb communities. Conifer species are sometimes thinned through hydraulic mulching or selective cutting. We assessed the effects of these treatments on mule deer (Odocoileus hemionus) habitat in northeastern New Mexico to determine if conifer thinning improved cover of preferred forage species for mule deer in areas with and without ungulates. We measured plant cover and occurrence of preferred forage species in the summers of 2011 and 2012. An ongoing regional drought probably reduced vegetation response, with preferred forage species and herbaceous cover responding to conifer thinning or ungulate exclusion immediately following treatment, but not the following year. In 2011, areas that received thinning treatments had a higher abundance of preferred forage when compared to sites with no treatment. Grass coverage exhibited an immediate response in 2011, with ungulate exclosures containing 8% more coverage than areas without exclosures. The results suggest that conifer thinning and ungulate exclusion may elicit a positive response, however in the presence of drought; the positive effects are only short-term.

AmeriFlux US-Vcm Valles Caldera Mixed Conifer

DOE Data Explorer

Litvak, Marcy [University of New Mexico

2016-01-01

This is the AmeriFlux version of the carbon flux data for the site US-Vcm Valles Caldera Mixed Conifer. Site Description - The Valles Caldera Mixed Conifer site is located in the 1200 km2 Jemez River basin in north-central New Mexico. Common to elevations ranging from 3040 to 2740 m in the region, the mixed conifer stand, within the entirety of the tower footprint in all directions, provides an excellent setting for studying the seasonal interaction between snow and vegetation.

Detection of aspen-conifer forest mixes from LANDSAT digital data. [Utah-Idaho Bear River Range

NASA Technical Reports Server (NTRS)

Jaynes, R. A.; Merola, J. A.

1982-01-01

Aspen, conifer and mixed aspen/conifer forests were mapped for a 15-quadrangle study area in the Utah-Idaho Bear River Range using LANDSAT multispectral scanner data. Digital classification and statistical analysis of LANDSAT data allowed the identification of six groups of signatures which reflect different types of aspen/conifer forest mixing. Photo interpretations of the print symbols suggest that such classes are indicative of mid to late seral aspen forests. Digital print map overlays and acreage calculations were prepared for the study area quadrangles. Further field verification is needed to acquire additional information about the nature of the forests. Single date LANDSAT analysis should be a cost effective means to index aspen forests which are at least in the mid seral phase of conifer invasion. Since aspen canopies tend to obscure understory conifers for early seral forests, a second date analysis, using data taken when aspens are leafless, could provide information about early seral aspen forests.

Aberrant Classopollis pollen reveals evidence for unreduced (2n) pollen in the conifer family Cheirolepidiaceae during the Triassic-Jurassic transition.

PubMed

Kürschner, Wolfram M; Batenburg, Sietske J; Mander, Luke

2013-10-07

Polyploidy (or whole-genome doubling) is a key mechanism for plant speciation leading to new evolutionary lineages. Several lines of evidence show that most species among flowering plants had polyploidy ancestry, but it is virtually unknown for conifers. Here, we study variability in pollen tetrad morphology and the size of the conifer pollen type Classopollis extracted from sediments of the Triassic-Jurassic transition, 200 Ma. Classopollis producing Cheirolepidiaceae were one of the most dominant and diverse groups of conifers during the Mesozoic. We show that aberrant pollen Classopollis tetrads, triads and dyads, and the large variation in pollen size indicates the presence of unreduced (2n) pollen, which is one of the main mechanisms in modern polyploid formation. Polyploid speciation may explain the high variability of growth forms and adaptation of these conifers to different environments and their resistance to extreme growth conditions. We suggest that polyploidy may have also reduced the extinction risk of these conifers during the End-Triassic biotic crisis.

Herbicide and conifer options for reforesting upper slopes in the Cascade Range.

Treesearch

Edward J. Dimock

1981-01-01

Nine herbicides were compared for aiding establishment of four conifer species on upper-slope forest sites dominated by sedge and beargrass. Both glyphosate and a mixture of atrazine + dalapon produced substantial and consistent gains in survival of all four conifers after 3 years.

Post-fire epicormic branching in Sierra Nevada Abies concolor (white fir)

Treesearch

Chad T. Hanson; Malcolm P. North

2006-01-01

In California's mixed-conifer forest, which historically had a regime of frequent fires, two conifers, Sequoiadendron giganteum and Pseudotsuga menziesii, were previously known to produce epicormic sprouts from branches. We found epicormic branching in a third mixed-conifer species, Abies concolor, 3 and 4...

Resource-dependent growth models for Sierran mixed-conifer saplings

Treesearch

S.W. Bigelow; M.P. North; W.R. Horwath

2009-01-01

Thinning to reduce wildfire hazard is a common management practice in frequent-fire forests of the American west, but it is uncertain whether projects will help regenerate fire-resistant, shade-intolerant pines. We studied naturally established saplings of six conifer species in mixed-conifer forest in northern California, USA to...

Annosus Root Rot in Eastern Conifers

Treesearch

Kathryn Robbins

1984-01-01

The fungus Heterobasidion annosum (Fr.) Bref. (= Fomes annosus (Fr.) Karst.) causes a root and butt rot of conifers in many temperate parts of the world. The decay, called annosus root rot, often kills infected conifers; infected trees that survive grow more slowly and are susceptible to windthrow and bark beetle attack.

Forming a structure of the CoNiFe alloys by X-ray irradiation

NASA Astrophysics Data System (ADS)

Valko, Natalia; Kasperovich, Andrey; Koltunowicz, Tomasz N.

The experimental data of electrodeposition kinetics researches and structure formation of ternary CoNiFe alloys deposited onto low-carbon steel 08kp in the presence of X-rays are presented. Relations of deposit rate, current efficiencies, element and phase compositions of CoNiFe coatings formed from sulfate baths with respect to cathode current densities (0.5-3A/dm2), electrolyte composition and irradiation were obtained. It is shown that, the CoNiFe coatings deposited by the electrochemical method involving exposure of the X-rays are characterized by more perfect morphology surfaces with less developed surface geometry than reference coatings. The effect of the X-ray irradiation on the electrodeposition of CoNiFe coatings promotes formatting of alloys with increased electropositive component and modified phase composition.

Persistent and pervasive compositional shifts of western boreal forest plots in Canada.

PubMed

Searle, Eric B; Chen, Han Y H

2017-02-01

Species compositional shifts have important consequences to biodiversity and ecosystem function and services to humanity. In boreal forests, compositional shifts from late-successional conifers to early-successional conifers and deciduous broadleaves have been postulated based on increased fire frequency associated with climate change truncating stand age-dependent succession. However, little is known about how climate change has affected forest composition in the background between successive catastrophic fires in boreal forests. Using 1797 permanent sample plots from western boreal forests of Canada measured from 1958 to 2013, we show that after accounting for stand age-dependent succession, the relative abundances of early-successional deciduous broadleaves and early-successional conifers have increased at the expense of late-successional conifers with climate change. These background compositional shifts are persistent temporally, consistent across all forest stand ages and pervasive spatially across the region. Rising atmospheric CO 2 promoted early-successional conifers and deciduous broadleaves, and warming increased early-successional conifers at the expense of late-successional conifers, but compositional shifts were not associated with climate moisture index. Our results emphasize the importance of climate change on background compositional shifts in the boreal forest and suggest further compositional shifts as rising CO 2 and warming will continue in the 21st century. © 2016 John Wiley & Sons Ltd.

Distribution and diversity of fungal species in and adjacent to the Los Alamos National Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Balice, R.G.; Jarmie, N.; Rogers, F.J.

1997-12-01

Fungi have demonstrated their ability to diversify and specialize to take advantage of new environments (Murphy 1996). These species are essential to the normal functioning of ecosystems and the impacts of human activities may be harmful to fungi. There is a need to inventory fungi throughout the range of their environments. Previously archived information representing 43 sample locations was used to perform a preliminary evaluation of the distributions and diversity of fungal species at the Los Alamos National Laboratory and in adjacent environments. Presence-absence data for 71 species of fungi in five habitats, pinon-juniper, canyon-bottom ponderosa pine, ponderosa pine, canyon-bottommore » mixed conifer, and mixed conifer were analyzed. The results indicate that even though fungi occur in each of the habitats, fungal species are not distributed evenly among these habitats. The richness of fungal species is greater in the canyon-bottom mixed conifer and mixed conifer habitats than in the pinon-juniper, canyon-bottom ponderosa pine or ponderosa pine habitats. All but three of the fungal species were recorded in either the canyon-bottom mixed conifer or the mixed conifer habitats, and all but seven of the fungal species were found in the mixed conifer habitat.« less

Responses of leaf structure and photosynthetic properties to intra-canopy light gradients: a common garden test with four broadleaf deciduous angiosperm and seven evergreen conifer tree species.

PubMed

Wyka, Tomasz P; Oleksyn, J; Zytkowiak, R; Karolewski, P; Jagodziński, A M; Reich, P B

2012-09-01

Spectra of leaf traits in northern temperate forest canopies reflect major differences in leaf longevity between evergreen conifers and deciduous broadleaf angiosperms, as well as plastic modifications caused by within-crown shading. We investigated (1) whether long-lived conifer leaves exhibit similar intra-canopy plasticity as short-lived broadleaves, and (2) whether global interspecific relationships between photosynthesis, nitrogen, and leaf structure identified for sun leaves adequately describe leaves differentiated in response to light gradients. We studied structural and photosynthetic properties of intra-tree sun and shade foliage in adult trees of seven conifer and four broadleaf angiosperm species in a common garden in Poland. Shade leaves exhibited lower leaf mass-per-area (LMA) than sun leaves; however, the relative difference was smaller in conifers than in broadleaves. In broadleaves, LMA was correlated with lamina thickness and tissue density, while in conifers, it was correlated with thickness but not density. In broadleaves, but not in conifers, reduction of lamina thickness was correlated with a thinner palisade layer. The more conservative adjustment of conifer leaves could result from a combination of phylogenetic constraints, contrasting leaf anatomies and shoot geometries, but also from functional requirements of long-lived foliage. Mass-based nitrogen concentration (N(mass)) was similar between sun and shade leaves, and was lower in conifers than in deciduous broadleaved species. Given this, the smaller LMA in shade corresponded with a lower area-based N concentration (N(area)). In evergreen conifers, LMA and N(area) were less powerful predictors of area-based photosynthetic rate (A (max(area))) in comparison with deciduous broadleaved angiosperms. Multiple regression for sun and shade leaves showed that, in each group, A (max(mass)) was related to N(mass) but not to LMA, whereas LMA became a significant codeterminant of A (max(mass)) in analysis combining both groups. Thus, a fundamental mass-based relationship between photosynthesis, nitrogen, and leaf structure reported previously also exists in a dataset combining within-crown and across-functional type variation.

Vegetation and Ecological Characteristics of Mixed-Conifer and Red Fir Forests at the Teakettle Experimental Forest

Treesearch

Malcolm North; Brian Oakley; Jiquan Chen; Heather Erickson; Andrew Gray; Antonio Izzo; Dale Johnson; Siyan Ma; Jim Marra; Marc Meyer; Kathryn Purcell; Tom Rambo; Dave Rizzo; Brent Roath; Tim Schowalter

2002-01-01

Detailed analysis of mixed-conifer and red fir forests were made from extensive, large vegetation sampling, systematically conducted throughout the Teakettle Experimental Forest. Mixed conifer is characterized by distinct patch conditions of closed-canopy tree clusters, persistent gaps and shrub thickets. This heterogeneous spatial structure provides contrasting...

Can the California forest practice rules adapt to address conifer encroachment?

Treesearch

Yana Valachovic; Lenya Quinn-Davidson; Richard B. Standiford

2015-01-01

The loss of oak woodlands to conifer encroachment is widely recognized as a major conservation concern. The increased occupancy of oak woodlands by Douglas-fir (Pseudotsuga menziesii) and other conifers has been reported throughout portions of California and the Pacific Northwest in multiple oak habitat types. In California, Oregon white oak (

Molecular characterization of Fusarium oxysporum and fusarium commune isolates from a conifer nursery

Treesearch

Jane E. Stewart; Mee-Sook Kim; Robert L. James; R. Kasten Dumroese; Ned B. Klopfenstein

2006-01-01

Fusarium species can cause severe root disease and damping-off in conifer nurseries. Fusarium inoculum is commonly found in most container and bareroot nurseries on healthy and diseased seedlings, in nursery soils, and on conifer seeds. Isolates of Fusarium spp. can differ in virulence; however, virulence and...

Management strategies for bark beetles in conifer forests

Treesearch

Christopher Fettig; Jacek  Hilszczański

2015-01-01

Several species of bark beetles (Coleoptera: Curculionidae, Scolytinae) are capable of causing significant amounts of tree mortality in conifer forests throughout much of the world.  In most cases, these events are part of the ecology of conifer forests and positively influence many ecological processes, but the economic and social implications can be...

Do pine trees in aspen stands increase bird diversity?

Treesearch

Mark A. Rumble; Lester D. Flake; Todd R. Mills; Brian L. Dykstra

2001-01-01

In the Black Hills of South Dakota, quaking aspen (Populus tremuloides) is being replaced by conifers through fire suppression and successional processes. Although the Black Hills National forest is removing conifers (primarily ponderosa pine [Pinus ponderosa]) to increase the aspen communities in some mixed stands, Forest Plan guidelines allow four conifers per...

Diterpene resin acids in conifers.

PubMed

Keeling, Christopher I; Bohlmann, Jörg

2006-11-01

Diterpene resin acids are a significant component of conifer oleoresin, which is a viscous mixture of terpenoids present constitutively or inducibly upon herbivore or pathogen attack and comprises one form of chemical resistance to such attacks. This review focuses on the recent discoveries in the chemistry, biosynthesis, molecular biology, regulation, and biology of these compounds in conifers.

First-year postfire and postharvest soil temperatures in aspen and conifer stands

Treesearch

Michael C. Amacher; Amber D. Johnson; Debra E. Kutterer; Dale L. Bartos

2001-01-01

Aspen (Populus tremuloides Michx.) stands are in decline throughout the Interior Western United States because of fire suppression, overbrowsing by domestic livestock and native ungulates, and forest succession. We measured summertime soil temperatures in stable aspen, decadent aspen, and mixed aspen/conifer stands; a mixed aspen/conifer clearcut;...

Reducing stand densities in immature and mature stands, Applegate Watershed, Southwest Oregon.

Treesearch

Marty L. Main; Michael P. Amaranthus

1996-01-01

Abstract Throughout the Applegate watershed, dense, overstocked, immature stands of mixed conifers and hardwoods and declining stands of mature conifers present significant and complex silvicultural problems. Stand stagnation is common, as is loss of large-diameter conifers from insects and wildfire. Treatments designed to maintain or encourage development of large-...

Aberrant Classopollis pollen reveals evidence for unreduced (2n) pollen in the conifer family Cheirolepidiaceae during the Triassic–Jurassic transition

PubMed Central

Kürschner, Wolfram M.; Batenburg, Sietske J.; Mander, Luke

2013-01-01

Polyploidy (or whole-genome doubling) is a key mechanism for plant speciation leading to new evolutionary lineages. Several lines of evidence show that most species among flowering plants had polyploidy ancestry, but it is virtually unknown for conifers. Here, we study variability in pollen tetrad morphology and the size of the conifer pollen type Classopollis extracted from sediments of the Triassic–Jurassic transition, 200 Ma. Classopollis producing Cheirolepidiaceae were one of the most dominant and diverse groups of conifers during the Mesozoic. We show that aberrant pollen Classopollis tetrads, triads and dyads, and the large variation in pollen size indicates the presence of unreduced (2n) pollen, which is one of the main mechanisms in modern polyploid formation. Polyploid speciation may explain the high variability of growth forms and adaptation of these conifers to different environments and their resistance to extreme growth conditions. We suggest that polyploidy may have also reduced the extinction risk of these conifers during the End-Triassic biotic crisis. PMID:23926159

Text to accompany slides/photographs of Lower Cretaceous pollen and spores in sediments from the Muirkirk clay pit (Prince Georges County, MD)

USGS Publications Warehouse

Robbins, Eleanora I.

1991-01-01

The pollen and spores found in clay beds at the Muirkirk clay pit are those of ferns and lycopods, seed ferns, shrubby conifers, bald cypress-type conifers, and tree-sized conifers. Some of the ferns and conifers have modern representatives which help interpret the vegetation of this site that bears Early Cretaceous dinosaur fossils. The plants, as well as the presence of algae, fungi, and mineral remains of bacteria, show that the site was once a wetland that developed on the clay floor of a waning oxbow lake.

Cyclic voltammetric study of Co-Ni-Fe alloys electrodeposition in sulfate medium

NASA Astrophysics Data System (ADS)

Hanafi, I.; Daud, A. R.; Radiman, S.

2013-11-01

Electrochemical technique has been used to study the electrodeposition of cobalt, nickel, iron and Co-Ni-Fe alloy on indium tin oxide (ITO) coated glass substrate. To obtain the nucleation mechanism, cyclic voltammetry is used to characterize the Co-Ni-Fe system. The scanning rate effect on the deposition process was investigated. Deposition of single metal occurs at potential values more positive than that estimated stability potential. Based on the cyclic voltammetry results, the electrodeposition of cobalt, nickel, iron and Co-Ni-Fe alloy clearly show that the process of diffusion occurs is controlled by the typical nucleation mechanism.

Better living through conifer removal: A demographic analysis of sage-grouse vital rates.

PubMed

Severson, John P; Hagen, Christian A; Tack, Jason D; Maestas, Jeremy D; Naugle, David E; Forbes, James T; Reese, Kerry P

2017-01-01

Sagebrush (Artemisia spp.) obligate wildlife species such as the imperiled greater sage-grouse (Centrocercus urophasianus) face numerous threats including altered ecosystem processes that have led to conifer expansion into shrub-steppe. Conifer removal is accelerating despite a lack of empirical evidence on grouse population response. Using a before-after-control-impact design at the landscape scale, we evaluated effects of conifer removal on two important demographic parameters, annual survival of females and nest survival, by monitoring 219 female sage-grouse and 225 nests in the northern Great Basin from 2010 to 2014. Estimates from the best treatment models showed positive trends in the treatment area relative to the control area resulting in an increase of 6.6% annual female survival and 18.8% nest survival relative to the control area by 2014. Using stochastic simulations of our estimates and published demographics, we estimated a 25% increase in the population growth rate in the treatment area relative to the control area. This is the first study to link sage-grouse demographics with conifer removal and supports recommendations to actively manage conifer expansion for sage-grouse conservation. Sage-grouse have become a primary catalyst for conservation funding to address conifer expansion in the West, and these findings have important implications for other ecosystem services being generated on the wings of species conservation.

Evolutionary assembly of the conifer fauna: distinguishing ancient from recent associations in bark beetles.

PubMed

Sequeira, A S; Normark, B B; Farrell, B D

2000-12-07

Several shifts from ancestral conifer feeding to angiosperm feeding have been implicated in the unparalleled diversification of beetle species. The single largest angiosperm-feeding beetle clade occurs in the weevils, and comprises the family Curculionidae and relatives. Most authorities confidently place the bark beetles (Scolytidae) within this radiation of angiosperm feeders. However, some clues indicate that the association between conifers and some scolytids, particularly in the tribe Tomicini, is a very ancient one. For instance, several fragments of Gondwanaland (South America, New Caledonia, Australia and New Guinea) harbour endemic Tomicini specialized on members of the formerly widespread and abundant conifer family Araucariaceae. As a first step towards resolving this seeming paradox, we present a phylogenetic analysis of the beetle family Scolytidae with particularly intensive sampling of conifer-feeding Tomicini and allies. We sequenced and analysed elongation factor 1alpha and nuclear rDNAs 18S and 28S for 45 taxa, using members of the weevil family Cossoninae as an out-group. Our results indicate that conifer feeding is the ancestral host association of scolytids, and that the most basal lineages of scolytids feed on Aramucaria. If scolytids are indeed nested within a great angiosperm-feeding clade, as many authorities have held, then a reversion to conifer feeding in ancestral scolytids appears to have occurred in the Mesozoic, when Araucaria still formed a major component of the woody flora.

Fire, competition and forest pests: landscape treatment to sustain ecosystem function

Treesearch

Geral I. McDonald; A. E. Harvey; J. R. Tonn

2000-01-01

Fire, competition for light and water, and native forest pests have interacted for millennia in western forests to produce a countryside dominated by seral species of conifers. These conifer-dominated ecosystems exist in six kinds of biotic communities. We divided one of these communities, the Rocky Mountain Montane Conifer Forest, into 31 subseries based on the...

Annosus Root disease of Western Conifers (FIDL)

Treesearch

Craig L. Schmitt; John R. Parmeter; John T. Kliejunas

2000-01-01

Annosus root disease is found on all western conifer species but is of most concern on true firs, hemlocks, and pines. Incense cedar, coast redwood and sequoia are sometimes infected in California. Western juniper is infected throughout its range. Annosus is common and causes extensive decay in old-growth western and mountain hemlock stands. Many mixed conifer stands...

Analysis of conifer mortality in Colorado using Forest Inventory and Analysis's annual forest inventory

Treesearch

Michael T. Thompson

2009-01-01

Aerial detection surveys indicate that widespread conifer mortality has been steadily increasing in Colorado, particularly since 2002. The Forest Inventory and Analysis (FIA) annual inventory system began in Colorado in 2002, which coincided with the onset of elevated conifer mortality rates. The current mortality event coupled with collection of 6 years of annual...

HOW to and Control Diplodia Shoot Blight, Collar Rot, and Canker of Conifers

Treesearch

Marguerita A. Palmer; Thomas H. Nicholls

1983-01-01

The fungus Diplodia pinea is worldwide in distribution and importance. In North America, Diplodia causes shoot blight and stem canker of conifers in plantations, windbreaks, and ornamental plantings. Most conifers are susceptible to infection, especially exotic species such as Austrian pine. In the north-central United States, the most common hosts are red, jack,...

Patterns of conifer tree regeneration following an autumn wildfire event in the western Oregon Cascade Range, USA.

Treesearch

Andrew J. Larson; Jerry F. Franklin

2005-01-01

We investigated the effect of fire severity and environmental conditions on conifer tree regeneration 11 years after an autumn wildfire in the western Oregon Cascade Range. Conifer tree seedlings, including those of Pseudotsuga menziesii, established promptly and at high densities following fire, in contrast to long establishment periods documented...

Long-term persistence and fire resilience of oak shrubfields in dry conifer forests of northern New Mexico

USGS Publications Warehouse

Guiterman, Christopher H.; Margolis, Ellis; Allen, Craig D.; Falk, Donald A.; Swetnam, Thomas W.

2017-01-01

Extensive high-severity fires are creating large shrubfields in many dry conifer forests of the interior western USA, raising concerns about forest-to-shrub conversion. This study evaluates the role of disturbance in shrubfield formation, maintenance and succession in the Jemez Mountains, New Mexico. We compared the environmental conditions of extant Gambel oak (Quercus gambelii) shrubfields with adjoining dry conifer forests and used dendroecological methods to determine the multi-century fire history and successional dynamics of five of the largest shrubfields (76–340 ha). Across the study area, 349 shrubfields (5–368 ha) occur in similar topographic and climate settings as dry conifer forests. This suggests disturbance, rather than other biophysical factors, may explain their origins and persistence. Gambel oak ages and tree-ring fire scars in our sampled shrubfields indicate they historically (1664–1899) burned concurrently with adjoining conifer forests and have persisted for over 115 years in the absence of fire. Aerial imagery from 1935 confirmed almost no change in sampled shrubfield patch sizes or boundaries over the twentieth century. The largest shrubfield we identified is less than 4% the size of the largest conifer-depleted and substantially shrub-dominated area recently formed in the Jemez following extensive high-severity wildfires, indicating considerable departure from historical patterns and processes. Projected hotter droughts and increasingly large high-severity fires could trigger more forest-to-shrub transitions and maintain existing shrubfields, inhibiting conifer forest recovery. Restoration of surface fire regimes and associated historical forest structures likely could reduce the rate and patch size of dry conifer forests being converted to shrubfields.

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms.

PubMed

Buschiazzo, Emmanuel; Ritland, Carol; Bohlmann, Jörg; Ritland, Kermit

2012-01-20

Comparative genomics can inform us about the processes of mutation and selection across diverse taxa. Among seed plants, gymnosperms have been lacking in genomic comparisons. Recent EST and full-length cDNA collections for two conifers, Sitka spruce (Picea sitchensis) and loblolly pine (Pinus taeda), together with full genome sequences for two angiosperms, Arabidopsis thaliana and poplar (Populus trichocarpa), offer an opportunity to infer the evolutionary processes underlying thousands of orthologous protein-coding genes in gymnosperms compared with an angiosperm orthologue set. Based upon pairwise comparisons of 3,723 spruce and pine orthologues, we found an average synonymous genetic distance (dS) of 0.191, and an average dN/dS ratio of 0.314. Using a fossil-established divergence time of 140 million years between spruce and pine, we extrapolated a nucleotide substitution rate of 0.68 × 10(-9) synonymous substitutions per site per year. When compared to angiosperms, this indicates a dramatically slower rate of nucleotide substitution rates in conifers: on average 15-fold. Coincidentally, we found a three-fold higher dN/dS for the spruce-pine lineage compared to the poplar-Arabidopsis lineage. This joint occurrence of a slower evolutionary rate in conifers with higher dN/dS, and possibly positive selection, showcases the uniqueness of conifer genome evolution. Our results are in line with documented reduced nucleotide diversity, conservative genome evolution and low rates of diversification in conifers on the one hand and numerous examples of local adaptation in conifers on the other hand. We propose that reduced levels of nucleotide mutation in large and long-lived conifer trees, coupled with large effective population size, were the main factors leading to slow substitution rates but retention of beneficial mutations.

Coarse-scale population structure of pathogenic Armillaria species in a mixed-conifer forest in the Blue Mountains of northeast Oregon.

Treesearch

B.A. Ferguson; T.A. Dreisbach; C.G. Parks; G.M. Filip; C.L. Schmitt

2003-01-01

The coarse-scale population structure of pathogenic Armillaria (Fr.) Staude species was determined on approximately 16 100 ha Of relatively dry, mixed-conifer forest in the Blue Mountains of northeast Oregon. Sampling of recently dead or live, symptomatic conifers produced 112 isolates of Armillaria from six tree species.

Terpenoid resin distribution in conifer needles with implications for red tree vole, Arborimus longicaudus, foraging

Treesearch

Rick G. Kelsey; Eric D. Forsman; James K. Swingle

2009-01-01

Tree voles are dietary specialists, feeding almost exclusively on conifer needles and bark. They reduce their exposure to conifer chemical defenses by physically removing resin ducts from many needles before ingesting the remaining tissue. The portion of needle removed differs among tree species, depending on the location of the resin ducts. To evaluate the amount of...

Changes in plant communities after planting and release of conifer seedlings: Early findings

Treesearch

Philip M. McDonald; Gary O. Fiddler

2001-01-01

Plant diversity, density, and development data from an extensive research program in conifer plantations in northern California suggest changes in plant community composition after site preparation and many kinds of release. Based on 17 studies, the average number of species per study area after 10 years was 25 with composition of 1 conifer, 1 hardwood, 8 shrubs, 12...

Paleoclimatology indicators of the Salt Wash member of the Upper Jurassic Morrison Formation near Jensen, Utah

DOE Office of Scientific and Technical Information (OSTI.GOV)

Medlyn, D.A.; Bilbey, S.A.

1993-04-01

The Upper Jurassic Morrison Formation has yielded one of the richest floras of the so-called transitional conifers'' of the Middle Mesozoic. Recently, a silicified axis of one of these conifers was collected from the Salt Wash member in essentially the same horizon as a previously reported partial Stegosaurus skeleton. In addition, two other axes of conifers were collected in the same immediate vicinity. Paleoecological considerations are extrapolated from the coniferous flora, vertebrate fauna and associated lithologies. Techniques of paleodendrology and relationships of extant/extinct environments are compared. The paleoclimatic conditions of the transitional conifers and associated dinosaurian fossils are postulated.

Hydraulic acclimation to shading in boreal conifers of varying shade tolerance.

PubMed

Schoonmaker, Amanda L; Hacke, Uwe G; Landhäusser, Simon M; Lieffers, Victor J; Tyree, Melvin T

2010-03-01

The purpose of this study was to determine how shading affects the hydraulic and wood-anatomical characteristics of four boreal conifers (Pinus banksiana, Pinus contorta, Picea glauca and Picea mariana) that differ in shade tolerance. Plants were grown in an open field and under a deciduous-dominated overstory for 6 years. Sapwood- and leaf-area specific conductivity, vulnerability curves, and anatomical measurements (light and scanning electron microscopy) were made on leading shoots from six to nine trees of each treatment combination. There was no difference in sapwood-area specific conductivity between open-grown and understory conifers, although two of four species had larger tracheid diameters in the open. Shaded conifers appeared to compensate for small diameter tracheids by changes in pit membrane structure. Scanning electron microscopy revealed that understory conifers had thinner margo strands, greater maximum pore size in the margo, and more torus extensions. All of these trends may contribute to inadequate sealing of the torus. This is supported by the fact that all species showed increased vulnerability to cavitation when grown in the understory. Although evaporative demand in an understory environment is low, a rapid change into fully exposed conditions could be detrimental for shaded conifers.

Conifer genomics and adaptation: at the crossroads of genetic diversity and genome function.

PubMed

Prunier, Julien; Verta, Jukka-Pekka; MacKay, John J

2016-01-01

Conifers have been understudied at the genomic level despite their worldwide ecological and economic importance but the situation is rapidly changing with the development of next generation sequencing (NGS) technologies. With NGS, genomics research has simultaneously gained in speed, magnitude and scope. In just a few years, genomes of 20-24 gigabases have been sequenced for several conifers, with several others expected in the near future. Biological insights have resulted from recent sequencing initiatives as well as genetic mapping, gene expression profiling and gene discovery research over nearly two decades. We review the knowledge arising from conifer genomics research emphasizing genome evolution and the genomic basis of adaptation, and outline emerging questions and knowledge gaps. We discuss future directions in three areas with potential inputs from NGS technologies: the evolutionary impacts of adaptation in conifers based on the adaptation-by-speciation model; the contributions of genetic variability of gene expression in adaptation; and the development of a broader understanding of genetic diversity and its impacts on genome function. These research directions promise to sustain research aimed at addressing the emerging challenges of adaptation that face conifer trees. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

A dendrochronology based fire history of Jeffry pine-mixed conifer forests in the Sierra San Pedro Martir, Mexico

Treesearch

Scott L. Stephens; Carl N. Skinner; Samantha J. Gill

2003-01-01

Conifer forests in northwestern Mexico have not experienced systematic fire suppression or logging, making them unique in western North America. Fire regimes of Pinus jeffreyi Grev. & Balf. mixed conifer forests in the Sierra San Pedro Martir, Baja California, Mexico, were determined by identifying 105 fire dates from 1034 fire scars in 105 specimens. Fires were...

Conifer regeneration on burned and unburned clearcuts on granitic soils of the Klamath National Forest

Treesearch

Danny Heavilan

1977-01-01

Regeneration was studied on a mixed conifer stand on granitic soils on the Klamath National Forest. Six years after logging and hand planting with Douglas-fir, stocking and growth on cutblocks where slash had been broadcast burned was compared with that on similar unburned cutblocks. Conifers were seven times more plentiful on the unburned areas, the average height of...

Understory plant diversity in riparian alder-conifer stands after logging in southeast Alaska.

Treesearch

Robert L. Deal

1997-01-01

Stand structure, tree height growth, and understory plant diversity were assessed in five mixed alder-conifer stands after logging in southeast Alaska. Tree species composition ranged from 7- to 91-percent alder, and basal area ranged from 30 to 55 m2/ha. The alder exhibited rapid early height growth, but recent growth has slowed considerably. Some conifers have...

Impact of climate change on cold hardiness of Douglas-fir (Pseudotsuga menziesii): Environmental and genetic considerations

Treesearch

Sheel Bansal; Bradley J. St. Clair; Constance A. Harrington; Peter J. Gould

2015-01-01

The success of conifers over much of the world’s terrestrial surface is largely attributable to their tolerance to cold stress (i.e., cold hardiness). Due to an increase in climate variability, climate change may reduce conifer cold hardiness, which in turn could impact ecosystem functioning and productivity in conifer-dominated forests. The expression of cold...

Twelve-year responses of planted and naturally regenerating conifers to variable-retention harvest in the Pacific Northwest, USA

Treesearch

Lauren S. Urgenson; Charles B. Halpern; Paul D. Anderson

2013-01-01

We studied patterns of conifer regeneration over 12 years as part of a regional-scale experiment in variable-retention harvest in the Pacific Northwest, the DEMO Study. We compared survival and height growth of planted conifers and density and seral composition of natural regeneration among treatments with differing retention levels (15% versus 40%) and patterns (...

Upland log volumes and conifer establishment patterns in two northern, upland old-growth redwood forests, a brief synopsis

Treesearch

Daniel J. Porter; John O. Sawyer

2007-01-01

We characterized the volume, weight and top surface area of naturally fallen logs in an old-growth redwood forest, and quantified conifer recruit densities on these logs and on the surrounding forest floor. We report significantly greater conifer recruit densities on log substrates as compared to the forest floor. Log substrate availability was calculated on a per...

Tree mortality in drought-stressed mixed-conifer and ponderosa pine forests, Arizona, USA

Treesearch

Joseph L. Ganey; Scott C. Vojta

2011-01-01

We monitored tree mortality in northern Arizona (USA) mixed-conifer and ponderosa pine (Pinus ponderosa Dougl. ex Laws) forests from 1997 to 2007, a period of severe drought in this area. Mortality was pervasive, occurring on 100 and 98% of 53 mixed-conifer and 60 ponderosa pine plots (1-ha each), respectively. Most mortality was attributable to a suite of forest...

Conifer-Derived Monoterpenes and Forest Walking

PubMed Central

Sumitomo, Kazuhiro; Akutsu, Hiroaki; Fukuyama, Syusei; Minoshima, Akiho; Kukita, Shin; Yamamura, Yuji; Sato, Yoshiaki; Hayasaka, Taiki; Osanai, Shinobu; Funakoshi, Hiroshi; Hasebe, Naoyuki; Nakamura, Masao

2015-01-01

Conifer and broadleaf trees emit volatile organic compounds in the summer. The major components of these emissions are volatile monoterpenes. Using solid phase microextraction fiber as the adsorbant, monoterpenes were successfully detected and identified in forest air samples. Gas chromatography/mass chromatogram of monoterpenes in the atmosphere of a conifer forest and that of serum from subjects who were walking in a forest were found to be similar each other. The amounts of α-pinene in the subjects became several folds higher after forest walking. The results indicate that monoterpenes in the atmosphere of conifer forests are transferred to and accumulate in subjects by inhalation while they are exposed to this type of environment. PMID:26819913

Insights into Conifer Giga-Genomes1

PubMed Central

De La Torre, Amanda R.; Birol, Inanc; Bousquet, Jean; Ingvarsson, Pär K.; Jansson, Stefan; Jones, Steven J.M.; Keeling, Christopher I.; MacKay, John; Nilsson, Ove; Ritland, Kermit; Street, Nathaniel; Yanchuk, Alvin; Zerbe, Philipp; Bohlmann, Jörg

2014-01-01

Insights from sequenced genomes of major land plant lineages have advanced research in almost every aspect of plant biology. Until recently, however, assembled genome sequences of gymnosperms have been missing from this picture. Conifers of the pine family (Pinaceae) are a group of gymnosperms that dominate large parts of the world’s forests. Despite their ecological and economic importance, conifers seemed long out of reach for complete genome sequencing, due in part to their enormous genome size (20–30 Gb) and the highly repetitive nature of their genomes. Technological advances in genome sequencing and assembly enabled the recent publication of three conifer genomes: white spruce (Picea glauca), Norway spruce (Picea abies), and loblolly pine (Pinus taeda). These genome sequences revealed distinctive features compared with other plant genomes and may represent a window into the past of seed plant genomes. This Update highlights recent advances, remaining challenges, and opportunities in light of the publication of the first conifer and gymnosperm genomes. PMID:25349325

Insights into conifer giga-genomes.

PubMed

De La Torre, Amanda R; Birol, Inanc; Bousquet, Jean; Ingvarsson, Pär K; Jansson, Stefan; Jones, Steven J M; Keeling, Christopher I; MacKay, John; Nilsson, Ove; Ritland, Kermit; Street, Nathaniel; Yanchuk, Alvin; Zerbe, Philipp; Bohlmann, Jörg

2014-12-01

Insights from sequenced genomes of major land plant lineages have advanced research in almost every aspect of plant biology. Until recently, however, assembled genome sequences of gymnosperms have been missing from this picture. Conifers of the pine family (Pinaceae) are a group of gymnosperms that dominate large parts of the world's forests. Despite their ecological and economic importance, conifers seemed long out of reach for complete genome sequencing, due in part to their enormous genome size (20-30 Gb) and the highly repetitive nature of their genomes. Technological advances in genome sequencing and assembly enabled the recent publication of three conifer genomes: white spruce (Picea glauca), Norway spruce (Picea abies), and loblolly pine (Pinus taeda). These genome sequences revealed distinctive features compared with other plant genomes and may represent a window into the past of seed plant genomes. This Update highlights recent advances, remaining challenges, and opportunities in light of the publication of the first conifer and gymnosperm genomes. © 2014 American Society of Plant Biologists. All Rights Reserved.

Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine

Treesearch

Zenaida V. Magbanua; Seval Ozkan; Benjamin D. Bartlett; Philippe Chouvarine; Christopher A. Saski; Aaron Liston; Richard C. Cronn; C. Dana Nelson; Daniel G. Peterson

2011-01-01

Loblolly pine (LP; Pinus taeda L.) is the most economically important tree in the U.S. and a cornerstone species in southeastern forests. However, genomics research on LP and other conifers has lagged behind studies on flowering plants due, in part, to the large size of conifer genomes. As a means to accelerate conifer genome research, we...

Twenty-five years of managing vegetation in conifer plantations in northern and central California: results, application, principles, and challenges

Treesearch

Philip M. McDonald; Gary O. Fiddler

2010-01-01

In the late 1970s, the outlook for conifer seedlings in new plantations in the Western United States was dismal&too many were dying or growing below the potential of the site. This situation was untenable, and a large study aimed at increasing the survival and growth of planted conifer seedlings was implemented. This was the National Administrative Study on...

The role of red alder in riparian forest structure along headwater streams in southeastern Alaska

USGS Publications Warehouse

Orlikowska, E.H.; Deal, R.L.; Hennon, P.E.; Wipfli, M.S.

2004-01-01

We assessed the influence of red alder on tree species composition, stand density, tree size distribution, tree mortality, and potential for producing large conifers, in 38-42 yr old riparian forests along 13 headwater streams in the Maybeso and Harris watersheds on Prince of Wales Island, Alaska. Red alder ranged from 0 to 53% of the total live basal area of the stands. Tree density, basal area of live and dead trees, and mean diameter of live conifers were not significantly related to the percent of alder as a proportion of total stand live basal area within these riparian forests. The mean diameter of the 100 largest conifers per hectare (the largest trees) was similar among different sites and appeared unrelated to the amount of alder in the stands. The mean diameter of dead conifers increased slightly with increasing proportion of red alder. Most dead trees were small and died standing. Red alder was much more concentrated immediately along stream margins (within 0-1 m distance from the stream bank vs. > 1 m). The presence of red alder did not inhibit the production of large-diameter conifers, and both alder and conifers provided small woody debris for fishless headwater streams in southeastern Alaska. Red alder is an important structural component of young-growth riparian stands.

Structure-function constraints of tracheid-based xylem: a comparison of conifers and ferns.

PubMed

Pittermann, Jarmila; Limm, Emily; Rico, Christopher; Christman, Mairgareth A

2011-10-01

The ferns comprise one of the most ancient tracheophytic plant lineages, and occupy habitats ranging from tundra to deserts and the equatorial tropics. Like their nearest relatives the conifers, modern ferns possess tracheid-based xylem but the structure-function relationships of fern xylem are poorly understood. Here, we sampled the fronds (megaphylls) of 16 species across the fern phylogeny, and examined the relationships among hydraulic transport, drought-induced cavitation resistance, the xylem anatomy of the stipe, and the gas-exchange response of the pinnae. For comparison, the results are presented alongside a similar suite of conifer data. Fern xylem is as resistant to cavitation as conifer xylem, but exhibits none of the hydraulic or structural trade-offs associated with resistance to cavitation. On a conduit diameter basis, fern xylem can exhibit greater hydraulic efficiency than conifer and angiosperm xylem. In ferns, wide and long tracheids compensate in part for the lack of secondary xylem and allow ferns to exhibit transport rates on a par with those of conifers. We suspect that it is the arrangement of the primary xylem, in addition to the intrinsic traits of the conduits themselves, that may help explain the broad range of cavitation resistance in ferns. © 2011 The Authors. New Phytologist © 2011 New Phytologist Trust.

Three centuries of managing introduced conifers in South Africa: Benefits, impacts, changing perceptions and conflict resolution.

PubMed

van Wilgen, Brian W; Richardson, David M

2012-09-15

Alien conifers, mainly pines, have been planted in South Africa for a range of purposes for over 300 years. Formal plantations cover 660,000 ha of the country, and invasive stands of varying density occur on a further 2.9 million ha. These trees have brought many benefits but have also caused unintended problems. The management of alien conifers has evolved in response to emerging problems such as excessive water use by plantations of conifers, changing values and markets, and the realities of a new ecological order brought about by invasive alien conifers. This paper reviews the history of conifer introductions to South Africa, the benefits and impacts with which they are associated, and the ongoing and evolving research that has been conducted to inform their management. The South African approach has included taking courageous steps to address the problem of highly invasive species that are also an important commercial crop. These interventions have not, however, had the desired effect of both retaining benefits from formal plantations while simultaneously reversing the trend of growing impacts associated with self-sown invasive stands. We suggest that different approaches need to be considered, including the systematic phasing out of commercial forestry in zones where it delivers low returns, and the introduction of more effective, focussed and integrated, region-specific approaches to the management of invasive stands of conifers. These steps would deliver much improved economic outcomes by protecting valuable ecosystem services, but will require political commitment to policies that could be unpopular in certain sectors of society. Copyright © 2012 Elsevier Ltd. All rights reserved.

Hydraulic safety margins and embolism reversal in stems and leaves: why are conifers and angiosperms so different?

PubMed

Johnson, Daniel M; McCulloh, Katherine A; Woodruff, David R; Meinzer, Frederick C

2012-10-01

Angiosperm and coniferous tree species utilize a continuum of hydraulic strategies. Hydraulic safety margins (defined as differences between naturally occurring xylem pressures and pressures that would cause hydraulic dysfunction, or differences between pressures resulting in loss of hydraulic function in adjacent organs (e.g., stems vs. leaves) tend to be much greater in conifers than angiosperms and serve to prevent stem embolism. However, conifers tend to experience embolism more frequently in leaves and roots than angiosperms. Embolism repair is thought to occur by active transport of sugars into empty conduits followed by passive water movement. The most likely source of sugar for refilling is from nonstructural carbohydrate depolymerization in nearby parenchyma cells. Compared to angiosperms, conifers tend to have little parenchyma or nonstructural carbohydrates in their wood. The ability to rapidly repair embolisms may rely on having nearby parenchyma cells, which could explain the need for greater safety margins in conifer wood as compared to angiosperms. The frequent embolisms that occur in the distal portions of conifers are readily repaired, perhaps due to the abundant parenchyma in leaves and roots, and these distal tissues may act as hydraulic circuit breakers that prevent tension-induced embolisms in the attached stems. Frequent embolisms in conifer leaves may also be due to weaker stomatal response to changes in ambient humidity. Although there is a continuum of hydraulic strategies among woody plants, there appear to be two distinct 'behaviors' at the extremes: (1) embolism prevention and (2) embolism occurrence and subsequent repair. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

PubMed Central

2012-01-01

Background Comparative genomics can inform us about the processes of mutation and selection across diverse taxa. Among seed plants, gymnosperms have been lacking in genomic comparisons. Recent EST and full-length cDNA collections for two conifers, Sitka spruce (Picea sitchensis) and loblolly pine (Pinus taeda), together with full genome sequences for two angiosperms, Arabidopsis thaliana and poplar (Populus trichocarpa), offer an opportunity to infer the evolutionary processes underlying thousands of orthologous protein-coding genes in gymnosperms compared with an angiosperm orthologue set. Results Based upon pairwise comparisons of 3,723 spruce and pine orthologues, we found an average synonymous genetic distance (dS) of 0.191, and an average dN/dS ratio of 0.314. Using a fossil-established divergence time of 140 million years between spruce and pine, we extrapolated a nucleotide substitution rate of 0.68 × 10-9 synonymous substitutions per site per year. When compared to angiosperms, this indicates a dramatically slower rate of nucleotide substitution rates in conifers: on average 15-fold. Coincidentally, we found a three-fold higher dN/dS for the spruce-pine lineage compared to the poplar-Arabidopsis lineage. This joint occurrence of a slower evolutionary rate in conifers with higher dN/dS, and possibly positive selection, showcases the uniqueness of conifer genome evolution. Conclusions Our results are in line with documented reduced nucleotide diversity, conservative genome evolution and low rates of diversification in conifers on the one hand and numerous examples of local adaptation in conifers on the other hand. We propose that reduced levels of nucleotide mutation in large and long-lived conifer trees, coupled with large effective population size, were the main factors leading to slow substitution rates but retention of beneficial mutations. PMID:22264329

The Paleocene Eocene carbon isotope excursion in higher plant organic matter: Differential fractionation of angiosperms and conifers in the Arctic

NASA Astrophysics Data System (ADS)

Schouten, Stefan; Woltering, Martijn; Rijpstra, W. Irene C.; Sluijs, Appy; Brinkhuis, Henk; Sinninghe Damsté, Jaap S.

2007-06-01

A study of upper Paleocene-lower Eocene (P-E) sediments deposited on the Lomonosov Ridge in the central Arctic Ocean reveals relatively high abundances of terrestrial biomarkers. These include dehydroabietane and simonellite derived from conifers (gymnosperms) and a tetra-aromatic triterpenoid derived from angiosperms. The relative percentage of the angiosperm biomarker of the summed angiosperm + conifer biomarkers was increased at the end of the Paleocene-Eocene thermal maximum (PETM), different when observed with pollen counts which showed a relative decrease in angiosperm pollen. Stable carbon isotopic analysis of these biomarkers shows that the negative carbon isotope excursion (CIE) during the PETM amounts to 3‰ for both conifer biomarkers, dehydroabietane and simonellite, comparable to the magnitude of the CIE inferred from marine carbonates, but significantly lower than the 4.5‰ of the terrestrial C 29n-alkane [M. Pagani, N. Pedentchouk, M. Huber, A. Sluijs, S. Schouten, H. Brinkhuis, J.S. Sinninghe Damsté, G.R. Dickens, and the IODP Expedition 302 Expedition Scientists (2006), Arctic's hydrology during global warming at the Paleocene-Eocene thermal maximum. Nature, 442, 671-675.], which is a compound sourced by both conifers and angiosperms. Conspicuously, the angiosperm-sourced aromatic triterpane shows a much larger CIE of 6‰ and suggests that angiosperms increased in their carbon isotopic fractionation during the PETM. Our results thus indicate that the 4.5‰ C 29n-alkane CIE reported previously represents the average CIE of conifers and angiosperms at this site and suggest that the large and variable CIE observed in terrestrial records may be partly explained by the variable contributions of conifers and angiosperms. The differential response in isotopic fractionation of angiosperms and conifers points to different physiological responses of these vegetation types to the rise in temperature, humidity, and greenhouse gases during the PETM.

Photosynthetic light capture and processing from cell to canopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stenberg, P.; DeLucia, E.H.; Schoettle, A.W.

1995-07-01

We have addressed the unique structural features of conifers, as they relate to photosynthetic production, at different levels of organization (from needle to canopy). Many concepts and measures must be defined for conifers so that they are consistent with the structural properties of needles and shoots. Consistency is needed in comparing the photosynthetic performance of conifers and broad leaves, wherein it is important to distinguish the effect of structural factors on light capture from differences in the photosynthetic response at a fixed interception. Needles differ from broad leaves both with respect to inner structure and external shape, which includes amore » continuum from nearly flat to cylindrical. For nonflat three-dimensional objects such as for conifer needles, total surface area is the natural measure. The meaning of the one-sided area of needles is not clear, but consistency requires that it be defined as half the total needle surface area, as concluded. Characteristic structural factors of conifers that affect their ability to harvest light are a deep canopy combined with a small needle size, which create an important penumbra effect, and the clustering of needles on shoots, which creates a discontinuous distribution of needle area. These factors imply that, at a fixed leaf area index, the intercepted PAR would be smaller in coniferous than in broad-leafed canopies, but the vertical gradient of light in conifers is less steep and light reaching the lower canopy is all penumbral (diffuse). Conifers can maintain a higher leaf area index, and this may be accomplished by a more even distribution of light between shoots at different locations in the canopy and also because shade shoots have a structure that effectively intercepts light. Broad leaves in general have higher maximum photosynthetic rates than do needles, and yet conifers are at least equally productive on a stand basis. Possible reasons are discussed.« less

A multiproxy environmental investigation of Holocene wood from a submerged conifer forest in Lake Huron, USA

Treesearch

R. Douglas Hunter; Irina P. Panyushkina; Steven W. Leavitt; Alex C. Wiedenhoeft; John Zawiskie

2006-01-01

Remains of a Holocene drowned forest in southern Lake Huron discovered in 12.5 m of water (164 m above sea level), 4.5 km east of Lexington, Michigan USA (Sanilac site), provided wood to investigate environment and lake history using several proxies. Macrofossil evidence indicates a forest comprised primarily of conifers equivalent to the modern “rich conifer swamp”...

Infrared radiation from hot cones on cool conifers attracts seed-feeding insects

PubMed Central

Takács, Stephen; Bottomley, Hannah; Andreller, Iisak; Zaradnik, Tracy; Schwarz, Joseph; Bennett, Robb; Strong, Ward; Gries, Gerhard

2008-01-01

Foraging animals use diverse cues to locate resources. Common foraging cues have visual, auditory, olfactory, tactile or gustatory characteristics. Here, we show a foraging herbivore using infrared (IR) radiation from living plants as a host-finding cue. We present data revealing that (i) conifer cones are warmer and emit more near-, mid- and long-range IR radiation than needles, (ii) cone-feeding western conifer seed bugs, Leptoglossus occidentalis (Hemiptera: Coreidae), possess IR receptive organs and orient towards experimental IR cues, and (iii) occlusion of the insects' IR receptors impairs IR perception. The conifers' cost of attracting cone-feeding insects may be offset by occasional mast seeding resulting in cone crops too large to be effectively exploited by herbivores. PMID:18945664

Infrared radiation from hot cones on cool conifers attracts seed-feeding insects.

PubMed

Takács, Stephen; Bottomley, Hannah; Andreller, Iisak; Zaradnik, Tracy; Schwarz, Joseph; Bennett, Robb; Strong, Ward; Gries, Gerhard

2009-02-22

Foraging animals use diverse cues to locate resources. Common foraging cues have visual, auditory, olfactory, tactile or gustatory characteristics. Here, we show a foraging herbivore using infrared (IR) radiation from living plants as a host-finding cue. We present data revealing that (i) conifer cones are warmer and emit more near-, mid- and long-range IR radiation than needles, (ii) cone-feeding western conifer seed bugs, Leptoglossus occidentalis (Hemiptera: Coreidae), possess IR receptive organs and orient towards experimental IR cues, and (iii) occlusion of the insects' IR receptors impairs IR perception. The conifers' cost of attracting cone-feeding insects may be offset by occasional mast seeding resulting in cone crops too large to be effectively exploited by herbivores.

Whitebark pine facilitation at treeline: potential interactions for disruption by an invasive pathogen.

PubMed

Tomback, Diana F; Blakeslee, Sarah C; Wagner, Aaron C; Wunder, Michael B; Resler, Lynn M; Pyatt, Jill C; Diaz, Soledad

2016-08-01

In stressful environments, facilitation often aids plant establishment, but invasive plant pathogens may potentially disrupt these interactions. In many treeline communities in the northern Rocky Mountains of the U.S. and Canada, Pinus albicaulis, a stress-tolerant pine, initiates tree islands at higher frequencies than other conifers - that is, leads to leeward tree establishment more frequently. The facilitation provided by a solitary (isolated) P. albicaulis leading to tree island initiation may be important for different life-history stages for leeward conifers, but it is not known which life-history stages are influenced and protection provided. However, P. albicaulis mortality from the non-native pathogen Cronartium ribicola potentially disrupts these facilitative interactions, reducing tree island initiation. In two Rocky Mountain eastern slope study areas, we experimentally examined fundamental plant-plant interactions which might facilitate tree island formation: the protection offered by P. albicaulis to leeward seed and seedling life-history stages, and to leeward krummholz conifers. In the latter case, we simulated mortality from C. ribicola for windward P. albicaulis to determine whether loss of P. albicaulis from C. ribicola impacts leeward conifers. Relative to other common solitary conifers at treeline, solitary P. albicaulis had higher abundance. More seeds germinated in leeward rock microsites than in conifer or exposed microsites, but the odds of cotyledon seedling survival during the growing season were highest in P. albicaulis microsites. Planted seedling survival was low among all microsites examined. Simulating death of windward P. albicaulis by C. ribicola reduced shoot growth of leeward trees. Loss of P. albicaulis to exotic disease may limit facilitation interactions and conifer community development at treeline and potentially impede upward movement as climate warms.

Pinus flexilis and Picea engelmannii share a simple and consistent needle endophyte microbiota with a potential role in nitrogen fixation

PubMed Central

Carrell, Alyssa A.; Frank, Anna C.

2014-01-01

Conifers predominantly occur on soils or in climates that are suboptimal for plant growth. This is generally attributed to symbioses with mycorrhizal fungi and to conifer adaptations, but recent experiments suggest that aboveground endophytic bacteria in conifers fix nitrogen (N) and affect host shoot tissue growth. Because most bacteria cannot be grown in the laboratory very little is known about conifer–endophyte associations in the wild. Pinus flexilis (limber pine) and Picea engelmannii (Engelmann spruce) growing in a subalpine, nutrient-limited environment are potential candidates for hosting endophytes with roles in N2 fixation and abiotic stress tolerance. We used 16S rRNA pyrosequencing to ask whether these conifers host a core of bacterial species that are consistently associated with conifer individuals and therefore potential mutualists. We found that while overall the endophyte communities clustered according to host species, both conifers were consistently dominated by the same phylotype, which made up 19–53% and 14–39% of the sequences in P. flexilis and P. engelmannii, respectively. This phylotype is related to Gluconacetobacter diazotrophicus and other N2 fixing acetic acid bacterial endophytes. The pattern observed for the P. flexilis and P. engelmannii needle microbiota—a small number of major species that are consistently associated with the host across individuals and species—is unprecedented for an endophyte community, and suggests a specialized beneficial endophyte function. One possibility is endophytic N fixation, which could help explain how conifers can grow in severely nitrogen-limited soil, and why some forest ecosystems accumulate more N than can be accounted for by known nitrogen input pathways. PMID:25071746

The ecology and management of moist mixed-conifer forests in eastern Oregon and Washington: a synthesis of the relevant biophysical science and implications for future land management

Treesearch

Peter Stine; Paul Hessburg; Thomas Spies; Marc Kramer; Christopher J. Fettig; Andrew Hansen; John Lehmkuhl; Kevin O' Hara; Karl Polivka; Peter Singleton; Susan Charnley; Andrew Merschel; Rachel White

2014-01-01

Land managers in the Pacific Northwest have reported a need for updated scientific information on the ecology and management of mixed-conifer forests east of the Cascade Range in Oregon and Washington. Of particular concern are the moist mixed-conifer forests, which have become drought-stressed and vulnerable to high-severity fire after decades of human disturbances...

Aspen Increase Soil Moisture, Nutrients, Organic Matter and Respiration in Rocky Mountain Forest Communities

PubMed Central

Buck, Joshua R.; St. Clair, Samuel B.

2012-01-01

Development and change in forest communities are strongly influenced by plant-soil interactions. The primary objective of this paper was to identify how forest soil characteristics vary along gradients of forest community composition in aspen-conifer forests to better understand the relationship between forest vegetation characteristics and soil processes. The study was conducted on the Fishlake National Forest, Utah, USA. Soil measurements were collected in adjacent forest stands that were characterized as aspen dominated, mixed, conifer dominated or open meadow, which includes the range of vegetation conditions that exist in seral aspen forests. Soil chemistry, moisture content, respiration, and temperature were measured. There was a consistent trend in which aspen stands demonstrated higher mean soil nutrient concentrations than mixed and conifer dominated stands and meadows. Specifically, total N, NO3 and NH4 were nearly two-fold higher in soil underneath aspen dominated stands. Soil moisture was significantly higher in aspen stands and meadows in early summer but converged to similar levels as those found in mixed and conifer dominated stands in late summer. Soil respiration was significantly higher in aspen stands than conifer stands or meadows throughout the summer. These results suggest that changes in disturbance regimes or climate scenarios that favor conifer expansion or loss of aspen will decrease soil resource availability, which is likely to have important feedbacks on plant community development. PMID:23285012

Seasonal and Perennial Changes in the Distribution of Water in the Sapwood of Conifers in a Sub-Frigid Zone1

PubMed Central

Utsumi, Yasuhiro; Sano, Yuzou; Funada, Ryo; Ohtani, Jun; Fujikawa, Seizo

2003-01-01

An analysis was made of progressive changes in patterns of cavitation in the sapwood of three species of conifer (Larix kaempferi, Abies sachalinensis, and Picea jezoensis) that were growing in a sub-frigid zone. In all three conifers, all tracheids of the newly forming outermost annual ring were filled with water or cytoplasm during the period from May to August. However, many tracheids in the transition zone from earlywood to latewood lost water in September, presumably through drought-induced cavitation. Cavitated tracheids tended to be continuously distributed in a tangential direction. Subsequently, some earlywood tracheids of the outermost annual ring lost water during the period from January to March. This was associated with freeze-thaw cycles. In the second and third annual rings from the cambium of all three conifers, the lumina of most tracheids in the transition zone from earlywood to latewood contained no water. In contrast, some latewood tracheids near the annual ring boundary and many earlywood tracheids retained water in their lumina. The third annual ring had more cavitated tracheids than the second annual ring. Our observations indicated that cavitation progressed gradually in the tracheids of the conifers and that they were never refilled once cavitation had occurred. The region involved in water transport in conifers did not include the entire sapwood and differed among annual rings. PMID:12692342

Ectomycorrhizal inoculation of containerized Western conifer seedlings.

Treesearch

Randy. Molina

1980-01-01

Of 15 ectomycorrhizal fungi inoculated onto five container-grown conifer species (Larix occidentalis, Pinus contorta, P. ponderosa, Pseudotsuga menziesii, and Tsuga heterophylla), only Laccaria laccata and Cenococcum geophilum...

The Transcriptomics of Secondary Growth and Wood Formation in Conifers

PubMed Central

Carvalho, Ana; Paiva, Jorge; Louzada, José; Lima-Brito, José

2013-01-01

In the last years, forestry scientists have adapted genomics and next-generation sequencing (NGS) technologies to the search for candidate genes related to the transcriptomics of secondary growth and wood formation in several tree species. Gymnosperms, in particular, the conifers, are ecologically and economically important, namely, for the production of wood and other forestry end products. Until very recently, no whole genome sequencing of a conifer genome was available. Due to the gradual improvement of the NGS technologies and inherent bioinformatics tools, two draft assemblies of the whole genomes sequence of Picea abies and Picea glauca arose in the current year. These draft genome assemblies will bring new insights about the structure, content, and evolution of the conifer genomes. Furthermore, new directions in the forestry, breeding and research of conifers will be discussed in the following. The identification of genes associated with the xylem transcriptome and the knowledge of their regulatory mechanisms will provide less time-consuming breeding cycles and a high accuracy for the selection of traits related to wood production and quality. PMID:24288610

Genetics and the physiological ecology of conifers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mitton, J.B.

1995-07-01

Natural selection acts on the diversity of genotypes, adapting populations to their specific environments and driving evolution in response to changes in climate. Genetically based differences in physiology and demography adapt species to alternate environments and produce, along with historical accidents, the present distribution of species. The sorting of conifer species by elevation is so marked that conifers help to define plant communities arranged in elevational bands in the Rocky Mountains. For these reasons, a genetic perspective is necessary to appreciate the evolution of ecophysiological patterns in the coniferous forests of the Rocky Mountains. The fascinating natural history and themore » economic importance of western conifers have stimulated numerous studies of their ecology, ecological genetics, and geographic variation. These studies yield some generalizations, and present some puzzling contradictions. This chapter focuses on the genetic variability associated with the physiological differences among genotypes in Rocky Mountain conifers. Variation among genotypes in survival, growth, and resistance to herbivores is used to illustrate genetically based differences in physiology, and to suggest the mechanistic studies needed to understand the relationships between genetic and physiological variation.« less

Towards decoding the conifer giga-genome.

PubMed

Mackay, John; Dean, Jeffrey F D; Plomion, Christophe; Peterson, Daniel G; Cánovas, Francisco M; Pavy, Nathalie; Ingvarsson, Pär K; Savolainen, Outi; Guevara, M Ángeles; Fluch, Silvia; Vinceti, Barbara; Abarca, Dolores; Díaz-Sala, Carmen; Cervera, María-Teresa

2012-12-01

Several new initiatives have been launched recently to sequence conifer genomes including pines, spruces and Douglas-fir. Owing to the very large genome sizes ranging from 18 to 35 gigabases, sequencing even a single conifer genome had been considered unattainable until the recent throughput increases and cost reductions afforded by next generation sequencers. The purpose of this review is to describe the context for these new initiatives. A knowledge foundation has been acquired in several conifers of commercial and ecological interest through large-scale cDNA analyses, construction of genetic maps and gene mapping studies aiming to link phenotype and genotype. Exploratory sequencing in pines and spruces have pointed out some of the unique properties of these giga-genomes and suggested strategies that may be needed to extract value from their sequencing. The hope is that recent and pending developments in sequencing technology will contribute to rapidly filling the knowledge vacuum surrounding their structure, contents and evolution. Researchers are also making plans to use comparative analyses that will help to turn the data into a valuable resource for enhancing and protecting the world's conifer forests.

Simulation of growth of Adirondack conifers in relation to global climate change

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pan, Y.; Raynal, D.J.

1993-06-01

Several conifer species grown in plantations in the southeastern Adirondack mountains of New York were chosen to model tree growth. In the models, annual xylem growth was decomposed into several components that reflect various intrinsic or extrinsic factors. Growth signals indicative of climatic effects were used to construct response functions using both multivariate analysis and Kalman filter methods. Two models were used to simulate tree growth response to future CO[sub 2]-induced climate change projected by GCMs. The comparable results of both models indicate that different conifer species have individualistic growth responses to future climatic change. The response behaviors of treesmore » are affected greatly by local stand conditions. The results suggest possible changes in future growth and distributions of naturally occurring conifers in this region.« less

An Appraisal of the Occurrence of the More Serious Tree Pests and Infectious Diseases in Poland in 1980 and a Forecast of Their Appearance in 1981,

DTIC Science & Technology

1982-10-28

122 2. Verticillium deciduous tree wilt (Verticillium alboatrum) ...... 124 3. Gray mold rot of conifer seedlings ( Botrytis cinerea ...or Botrytis cinerea . The overall occurrence of seedling wilt disease in young forest tree nur- series is shown in Table 53. Parasitic seedling wilt...successive years. 3. Gray mold rot of conifer seedlings ( Botrytis cinerea ) The occurrence of conifer seedling gray mold rot was confirmed on black pine

Chernobyl Doses. Volume 2. Conifer Stress near Chernobyl Derived from Landsat Imagery

DTIC Science & Technology

1992-12-01

Defense Nuclear Agency Alexandria, VA 22310-3398 AD-A259 085 S.... IiilII|IlH~l D.A-TR-92-3,,.v2 Chernobyl Doses Volume 2-Conifer Stress Near... Chernobyl Derived from Landsat Imagery Gene E. McClellan Terrence H. Hemmer Ronald N. DeWitt Pacific-Sierra Research Corporation 12340 Santa Monica Boulevard...870929 - 920228 4. TITLE AND SUBTITLE 5. FUNDING NUMBERS Chernobyl Doses C - DNA 001-87-C-0104 Volume 2- Conifer Stress Near Chernobyl Derived from

Resource physiology of conifers: Acquisition, allocation, and utilization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, W.K.; Hinckley, T.M.

1995-03-01

This book focuses on a synthetic view of the resource physiology of conifer trees with an emphasis on developing a perspective that can integrate across the biological hierarchy. This objective is in concert with more scientific goals of maintaining biological diversity and the sustainability of forest systems. The preservation of coniferous forest ecosystems is a major concern today. This volume deals with the topics of resource acquisition, allocation, and utilization in conifers. Selected papers are indexed separately for inclusion in the Energy Science and Technology Database.

Day-roosts of female long-eared myotis in Western Oregon

USGS Publications Warehouse

Waldien, David L.; Hayes, J.P.; Arnett, Edward B.

2000-01-01

Roosts are a critical habitat component for bats and may influence their survival and fitness. We used radiotelemetry to investigate characteristics of day-roosts of female long-eared myotis (Myotis evotis) in watersheds characterized by different forest conditions and the spatial relationships between day-roosts and available water. We tracked 21 bats to 73 roosts (n = 102 occasions) from June to August 1996 and 1997 on the western slope of the Cascade Mountains, Oregon. Bats primarily used conifer stumps as day-roosts in watersheds dominated by younger forests and used conifer snags, and to a lesser extent conifer stumps, in watersheds with greater proportions of older forests. Individual long-eared myotis used different types of structures as day-roosts, and type of structure used did not differ with reproductive condition. Day-roosts were primarily located in upslope habitat and averaged 0.59 A? 0.03 km from available water and 0.66 A? 0.02 km from capture sites. Roosts were not located closer to available water than random points, but were closer than random points to captures sites. Conifer snags used as day-roosts averaged 34 A? 5 m in height and 93 A? 12 cm diameter at breast height (dbh); snags in intermediate stages of decay had highest use. Use of conifer snags was positively associated with the number of snags within 20 m and negatively associated with distance from stand edge. Conifer stumps used as day-roosts averaged 133 A? 9 cm in height and 59 A? 4 cm dbh. Western hemlock and Douglas-fir stumps were used more often than western redcedar stumps as day-roosts. Odds of a stump being used as a day-roost increased with increasing height of the stump (downhill side) and whether it was situated in a gap in vegetation. We contend that management of day-roosts for forest-dwelling bats should focus on maintaining large conifer snags across landscapes through space and time. In landscapes where there are relatively few large conifer snags, stumps appear to provide important, but ephemeral, roosts for long-eared myotis.

[Effect of Trichoderma species fungi on soil micromycetes, causing infectious conifer seedling lodging in Siberian tree nurseries].

PubMed

Iakimenko, E E; Grodinitskaia, I D

2000-01-01

Soils in the tree nurseries studied were characterized by a lower species diversity of fungi than adjacent virgin soils. In particular, the relative abundances of representatives of the genera Mucor, Chaetomium, and Trichoderma in the nursery soil were two times lower than in adjacent virgin soils. On the other hand, the nursery soil exhibited greater abundances of fungi of the genus Fusarium, which are causative agents of many diseases of conifer seedlings. To appreciate the efficiency of biocontrol of the infectious diseases of conifer seedlings, we introduced several indigenous Trichoderma strains into the nursery soil and found that this affected the species composition of soil microflora considerably. Changes in the species composition of mycobiota beneficially influenced the phytosanitary state of soils and reduced the infectious lodging of conifer seedlings.

Headwater riparian invertebrate communities associated with red alder and conifer wood and leaf litter in southeastern Alaska

USGS Publications Warehouse

LeSage, C.M.; Merritt, R.W.; Wipfli, M.S.

2005-01-01

We examined how management of young upland forests in southeastern Alaska affect riparian invertebrate taxa richness, density, and biomass, in turn, potentially influencing food abundance for fish and wildlife. Southeastern Alaska forests are dominated by coniferous trees including Sitka spruce (Picea sitchensis (Bong.) Carr.), western hemlock (Tsuga heterophylla (Raf.) Sarg.), with mixed stands of red cedar (Thuja plicata Donn.). Red alder (Alnus rubra Bong.) is hypothesized to influence the productivity of young-growth conifer forests and through forest management may provide increased riparian invertebrate abundance. To compare and contrast invertebrate densities between coniferous and alder riparian habitats, leaf litter and wood debris (early and late decay classes) samples were collected along eleven headwater streams on Prince of Wales Island, Alaska, during the summers of 2000 and 2001. Members of Acarina and Collembola were the most abundant taxa collected in leaf litter with alder litter having significantly higher mean taxa richness than conifer litter. Members of Acarina were the most abundant group collected on wood debris and alder wood had significantly higher mean taxa richness and biomass than conifer wood. Alder wood debris in more advanced decay stages had the highest mean taxa richness and biomass, compared to other wood types, while conifer late decay wood debris had the highest densities of invertebrates. The inclusion of alder in young-growth conifer forests can benefit forest ecosystems by enhancing taxa richness and biomass of riparian forest invertebrates. ?? 2005 by the Northwest Scientific Association. All rights reserved.

Genomic hardwiring and phenotypic plasticity of terpenoid-based defenses in conifers.

PubMed

Huber, Dezene P W; Ralph, Steven; Bohlmann, Jörg

2004-12-01

Over evolutionary history, conifers have faced a myriad of threats from phloem- and xylem-feeding insects, defoliating insects, and fungal pathogens. Among the trees' defenses, terpenoids appear to play a major role by harming, disabling, deterring, repelling, or otherwise reducing the fitness of potential invaders. Each of the three classes of terpenoids in conifers, monoterpenes, sesquiterpenes, and diterpenes, are composed of a large number of representative compounds. In most cases, the presence of a particular terpenoid compound in the oleoresin or volatile emissions from a specific conifer can be accounted for by the expression of one of many committed terpene synthase (TPS) genes. However, while each TPS may produce one or a few major products, many produce a variety of minor products with relatively constant component ratios in the product blends. TPS genes exist in conifers in large and functionally diverse, yet monophyletic, gene families. Within these gene families, new biochemical functions of TPS appear to have evolved by gene duplication and changes in the amino acid sequence of the enzyme's active site. In addition, TPS genes may be differentially expressed prior to, during, and following attack by insects or pathogens. Thus, while the production of any particular terpenoid is hardwired into a conifer's genome, these trees have the capacity to change the mixture of terpenoids in oleoresin secretions and volatile emissions. Anatomical changes may also accompany induced terpenoid production, supplementing the plasticity of the molecular and biochemical events.

Repeated freeze-thaw cycles induce embolism in drought stressed conifers (Norway spruce, stone pine).

PubMed

Mayr, Stefan; Gruber, Andreas; Bauer, Helmut

2003-07-01

Freezing and thawing lead to xylem embolism when gas bubbles caused by ice formation expand during the thaw process. However, previous experimental studies indicated that conifers are resistant to freezing-induced embolism, unless xylem pressure becomes very negative during the freezing. In this study, we show that conifers experienced freezing-induced embolism when exposed to repeated freeze-thaw cycles and simultaneously to drought. Simulating conditions at the alpine timberline (128 days with freeze-thaw events and thawing rates of up to 9.5 K h(-1) in the xylem of exposed twigs during winter), young trees of Norway spruce [Picea abies (L.) Karst.] and stone pine (Pinus cembra L.) were exposed to 50 and 100 freeze-thaw cycles. This treatment caused a significant increase in embolism rates in drought-stressed samples. Upon 100 freeze-thaw cycles, vulnerability thresholds (50% loss of conductivity) were shifted 1.8 MPa (Norway spruce) and 0.8 MPa (stone pine) towards less negative water potentials. The results demonstrate that freeze-thaw cycles are a possible reason for winter-embolism in conifers observed in several field studies. Freezing-induced embolism may contribute to the altitudinal limits of conifers.

A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers

PubMed Central

2012-01-01

Background Seed plants are composed of angiosperms and gymnosperms, which diverged from each other around 300 million years ago. While much light has been shed on the mechanisms and rate of genome evolution in flowering plants, such knowledge remains conspicuously meagre for the gymnosperms. Conifers are key representatives of gymnosperms and the sheer size of their genomes represents a significant challenge for characterization, sequencing and assembling. Results To gain insight into the macro-organisation and long-term evolution of the conifer genome, we developed a genetic map involving 1,801 spruce genes. We designed a statistical approach based on kernel density estimation to analyse gene density and identified seven gene-rich isochors. Groups of co-localizing genes were also found that were transcriptionally co-regulated, indicative of functional clusters. Phylogenetic analyses of 157 gene families for which at least two duplicates were mapped on the spruce genome indicated that ancient gene duplicates shared by angiosperms and gymnosperms outnumbered conifer-specific duplicates by a ratio of eight to one. Ancient duplicates were much more translocated within and among spruce chromosomes than conifer-specific duplicates, which were mostly organised in tandem arrays. Both high synteny and collinearity were also observed between the genomes of spruce and pine, two conifers that diverged more than 100 million years ago. Conclusions Taken together, these results indicate that much genomic evolution has occurred in the seed plant lineage before the split between gymnosperms and angiosperms, and that the pace of evolution of the genome macro-structure has been much slower in the gymnosperm lineage leading to extent conifers than that seen for the same period of time in flowering plants. This trend is largely congruent with the contrasted rates of diversification and morphological evolution observed between these two groups of seed plants. PMID:23102090

A spruce gene map infers ancient plant genome reshuffling and subsequent slow evolution in the gymnosperm lineage leading to extant conifers.

PubMed

Pavy, Nathalie; Pelgas, Betty; Laroche, Jérôme; Rigault, Philippe; Isabel, Nathalie; Bousquet, Jean

2012-10-26

Seed plants are composed of angiosperms and gymnosperms, which diverged from each other around 300 million years ago. While much light has been shed on the mechanisms and rate of genome evolution in flowering plants, such knowledge remains conspicuously meagre for the gymnosperms. Conifers are key representatives of gymnosperms and the sheer size of their genomes represents a significant challenge for characterization, sequencing and assembling. To gain insight into the macro-organisation and long-term evolution of the conifer genome, we developed a genetic map involving 1,801 spruce genes. We designed a statistical approach based on kernel density estimation to analyse gene density and identified seven gene-rich isochors. Groups of co-localizing genes were also found that were transcriptionally co-regulated, indicative of functional clusters. Phylogenetic analyses of 157 gene families for which at least two duplicates were mapped on the spruce genome indicated that ancient gene duplicates shared by angiosperms and gymnosperms outnumbered conifer-specific duplicates by a ratio of eight to one. Ancient duplicates were much more translocated within and among spruce chromosomes than conifer-specific duplicates, which were mostly organised in tandem arrays. Both high synteny and collinearity were also observed between the genomes of spruce and pine, two conifers that diverged more than 100 million years ago. Taken together, these results indicate that much genomic evolution has occurred in the seed plant lineage before the split between gymnosperms and angiosperms, and that the pace of evolution of the genome macro-structure has been much slower in the gymnosperm lineage leading to extent conifers than that seen for the same period of time in flowering plants. This trend is largely congruent with the contrasted rates of diversification and morphological evolution observed between these two groups of seed plants.

Two tropical conifers show strong growth and water-use efficiency responses to altered CO2 concentration

PubMed Central

Dalling, James W.; Cernusak, Lucas A.; Winter, Klaus; Aranda, Jorge; Garcia, Milton; Virgo, Aurelio; Cheesman, Alexander W.; Baresch, Andres; Jaramillo, Carlos; Turner, Benjamin L.

2016-01-01

Background and Aims Conifers dominated wet lowland tropical forests 100 million years ago (MYA). With a few exceptions in the Podocarpaceae and Araucariaceae, conifers are now absent from this biome. This shift to angiosperm dominance also coincided with a large decline in atmospheric CO2 concentration (ca). We compared growth and physiological performance of two lowland tropical angiosperms and conifers at ca levels representing pre-industrial (280 ppm), ambient (400 ppm) and Eocene (800 ppm) conditions to explore how differences in ca affect the growth and water-use efficiency (WUE) of seedlings from these groups. Methods Two conifers (Araucaria heterophylla and Podocarpus guatemalensis) and two angiosperm trees (Tabebuia rosea and Chrysophyllum cainito) were grown in climate-controlled glasshouses in Panama. Growth, photosynthetic rates, nutrient uptake, and nutrient use and water-use efficiencies were measured. Key Results Podocarpus seedlings showed a stronger (66 %) increase in relative growth rate with increasing ca relative to Araucaria (19 %) and the angiosperms (no growth enhancement). The response of Podocarpus is consistent with expectations for species with conservative growth traits and low mesophyll diffusion conductance. While previous work has shown limited stomatal response of conifers to ca, we found that the two conifers had significantly greater increases in leaf and whole-plant WUE than the angiosperms, reflecting increased photosynthetic rate and reduced stomatal conductance. Foliar nitrogen isotope ratios (δ15N) and soil nitrate concentrations indicated a preference in Podocarpus for ammonium over nitrate, which may impact nitrogen uptake relative to nitrate assimilators under high ca. Significance Podocarps colonized tropical forests after angiosperms achieved dominance and are now restricted to infertile soils. Although limited to a single species, our data suggest that higher ca may have been favourable for podocarp colonization of tropical South America 60 MYA, while plasticity in photosynthetic capacity and WUE may help account for their continued persistence under large changes in ca since the Eocene. PMID:27582361

Tall shrub layer biomass in conifer plantations in northeastern Minnesota.

Treesearch

Lewis F. Ohmann

1982-01-01

Provides estimates of biomass (pounds/acre) for tall shrub species in 53 conifer plantations in northeastern Minnesota. The estimates are analyzed by plantation age and silvicultural practices used to establish and release the plantations.

Biomass in conifer plantations of northeastern Minnesota.

Treesearch

Lewis F. Ohmann

1984-01-01

Provides biomass (pounds/acre) estimates for vegetative strata and herb-low shrub species for 53 conifer plantations in Northeastern Minnesota. The estimates are analyzed by plantation age and silvicultural practices used to establish and release the plantations.

Comparative analysis of expressed sequence tags of conifers and angiosperms reveals sequences specifically conserved in conifers.

PubMed

Ujino-Ihara, Tokuko; Kanamori, Hiroyuki; Yamane, Hiroko; Taguchi, Yuriko; Namiki, Nobukazu; Mukai, Yuzuru; Yoshimura, Kensuke; Tsumura, Yoshihiko

2005-12-01

To identify and characterize lineage-specific genes of conifers, two sets of ESTs (with 12791 and 5902 ESTs, representing 5373 and 3018 gene transcripts, respectively) were generated from the Cupressaceae species Cryptomeria japonica and Chamaecyparis obtusa. These transcripts were compared with non-redundant sets of genes generated from Pinaceae species, other gymnosperms and angiosperms. About 6% of tentative unique genes (Unigenes) of C. japonica and C. obtusa had homologs in other conifers but not angiosperms, and about 70% had apparent homologs in angiosperms. The calculated GC contents of orthologous genes showed that GC contents of coniferous genes are likely to be lower than those of angiosperms. Comparisons of the numbers of homologous genes in each species suggest that copy numbers of genes may be correlated between diverse seed plants. This correlation suggests that the multiplicity of such genes may have arisen before the divergence of gymnosperms and angiosperms.

Conifer expansion reduces the competitive ability and herbivore defense of aspen by modifying light environment and soil chemistry.

PubMed

Calder, W John; Horn, Kevin J; St Clair, Samuel B

2011-06-01

Disturbance patterns strongly influence plant community structure. What remains less clear, particularly at a mechanistic level, is how changes in disturbance cycles alter successional outcomes in plant communities. There is evidence that fire suppression is resulting in longer fire return intervals in subalpine forests and that these lengthened intervals increase competitive interactions between aspen and conifer species. We conducted a field and greenhouse study to compare photosynthesis, growth and defense responses of quaking aspen and subalpine fir regeneration under light reductions and shifts in soil chemistry that occur as conifers increase in dominance. The studies demonstrated that aspen regeneration was substantially more sensitive to light and soil resource limitations than that of subalpine fir. For aspen, light reductions and/or shifts in soil chemistry limited height growth, biomass gain, photosynthesis and the production of defense compounds (phenolic glycosides and condensed tannins). Biomass gain and phenolic glycoside concentrations were co-limited by light reduction and changes in soil chemistry. In contrast, subalpine fir seedlings tended to be more tolerant of low light conditions and showed no sensitivity to changes in soil chemistry. Unlike aspen, subalpine fir increased its root to shoot ratio on conifer soils, which may partially explain its maintenance of growth and defense. The results suggest that increasing dominance of conifers in subalpine forests alters light conditions and soil chemistry in a way that places greater physiological and growth constraints on aspen than subalpine fir, with a likely outcome being more successful recruitment of conifers and losses in aspen cover.

Branching habit and the allocation of reproductive resources in conifers.

PubMed

Leslie, Andrew B

2012-09-01

Correlated relationships between branch thickness, branch density, and twig and leaf size have been used extensively to study the evolution of plant canopy architecture, but fewer studies have explored the impact of these relationships on the allocation of reproductive resources. This study quantifies pollen cone production in conifers, which have similar basic reproductive biology but vary dramatically in branching habit, in order to test how differences in branch diameter influence pollen cone size and the density with which they are deployed in the canopy. Measurements of canopy branch density, the number of cones per branch and cone size were used to estimate the amount of pollen cone tissues produced by 16 species in three major conifer clades. The number of pollen grains produced was also estimated using direct counts from individual pollen cones. The total amount of pollen cone tissues in the conifer canopy varied little among species and clades, although vegetative traits such as branch thickness, branch density and pollen cone size varied over several orders of magnitude. However, branching habit controls the way these tissues are deployed: taxa with small branches produce small pollen cones at a high density, while taxa with large branches produce large cones relatively sparsely. Conifers appear to invest similar amounts of energy in pollen production independent of branching habit. However, similar associations between branch thickness, branch density and pollen cone size are seen across conifers, including members of living and extinct groups not directly studied here. This suggests that reproductive features relating to pollen cone size are in large part a function of the evolution of vegetative morphology and branching habit.

Seedlings of temperate rainforest conifer and angiosperm trees differ in leaf area display.

PubMed

Lusk, Christopher H; Pérez-Millaqueo, Manuel M; Saldaña, Alfredo; Burns, Bruce R; Laughlin, Daniel C; Falster, Daniel S

2012-07-01

The contemporary relegation of conifers mainly to cold or infertile sites has been ascribed to low competitive ability, as a result of the hydraulic inefficiency of tracheids and their seedlings' initial dependence on small foliage areas. Here it is hypothesized that, in temperate rainforests, the larger leaves of angiosperms also reduce self-shading and thus enable display of larger effective foliage areas than the numerous small leaves of conifers. This hypothesis was tested using 3-D modelling of plant architecture and structural equation modelling to compare self-shading and light interception potential of seedlings of six conifers and 12 angiosperm trees from temperate rainforests. The ratio of displayed leaf area to plant mass (LAR(d)) was used to indicate plant light interception potential: LAR(d) is the product of specific leaf area, leaf mass fraction, self-shading and leaf angle. Angiosperm seedlings self-shaded less than conifers, mainly because of differences in leaf number (more than leaf size), and on average their LAR(d) was about twice that of conifers. Although specific leaf area was the most pervasive influence on LAR(d), differences in self-shading also significantly influenced LAR(d) of large seedlings. The ability to deploy foliage in relatively few, large leaves is advantageous in minimizing self-shading and enhancing seedling light interception potential per unit of plant biomass. This study adds significantly to evidence that vegetative traits may be at least as important as reproductive innovations in explaining the success of angiosperms in productive environments where vegetation is structured by light competition.

Seedlings of temperate rainforest conifer and angiosperm trees differ in leaf area display

PubMed Central

Lusk, Christopher H.; Pérez-Millaqueo, Manuel M.; Saldaña, Alfredo; Burns, Bruce R.; Laughlin, Daniel C.; Falster, Daniel S.

2012-01-01

Background and Aims The contemporary relegation of conifers mainly to cold or infertile sites has been ascribed to low competitive ability, as a result of the hydraulic inefficiency of tracheids and their seedlings' initial dependence on small foliage areas. Here it is hypothesized that, in temperate rainforests, the larger leaves of angiosperms also reduce self-shading and thus enable display of larger effective foliage areas than the numerous small leaves of conifers. Methods This hypothesis was tested using 3-D modelling of plant architecture and structural equation modelling to compare self-shading and light interception potential of seedlings of six conifers and 12 angiosperm trees from temperate rainforests. The ratio of displayed leaf area to plant mass (LARd) was used to indicate plant light interception potential: LARd is the product of specific leaf area, leaf mass fraction, self-shading and leaf angle. Results Angiosperm seedlings self-shaded less than conifers, mainly because of differences in leaf number (more than leaf size), and on average their LARd was about twice that of conifers. Although specific leaf area was the most pervasive influence on LARd, differences in self-shading also significantly influenced LARd of large seedlings. Conclusions The ability to deploy foliage in relatively few, large leaves is advantageous in minimizing self-shading and enhancing seedling light interception potential per unit of plant biomass. This study adds significantly to evidence that vegetative traits may be at least as important as reproductive innovations in explaining the success of angiosperms in productive environments where vegetation is structured by light competition. PMID:22585929

Mistletoes of North American conifers

Treesearch

Brian W. Geils; Jose Cibrian-Tovar; Benjamin Moody

2002-01-01

Mistletoes of the families Loranthaceae and Viscaceae are the most important vascular plant parasites of conifers in Canada, the United States, and Mexico. Species of the genera Psittacanthus, Phoradendron, and Arceuthobium cause the greatest economic and ecological impacts. These shrubby, aerial parasites...

Enzymes of Glyoxylate in Conifers 12

PubMed Central

Firenzuoli, A. M.; Vanni, P.; Mastronuzzi, E.; Zanobini, A.; Baccari, V.

1968-01-01

The high level of lipids in seeds of some species of conifers suggested that the glyoxylate cycle might have a role in conifer seed metabolism. Six species (Pinus pinea, Pinus pinaster, Pinus canariensis, Pinus strobus, Abies alba, and Cupressus sempervirens) were investigated for their lipid content and malate synthase and isocitrate lyase level. The fatty acid composition of the triglyceride fraction was also investigated. The correlation between lipid content of germinating seed with the presence of the cycle was confirmed. The enzymes of the glyoxylate cycle were not detected in Cupressus sempervirens where the lipid content is very low. PMID:16656892

Recurrent abnormalities in conifer cones and the evolutionary origins of flower-like structures.

PubMed

Rudall, Paula J; Hilton, Jason; Vergara-Silva, Francisco; Bateman, Richard M

2011-03-01

Conifer cones are reproductive structures that are typically of restricted growth and either exclusively pollen-bearing (male) or exclusively ovule-bearing (female). Here, we review two common spontaneous developmental abnormalities of conifer cones: proliferated cones, in which the apex grows vegetatively, and bisexual cones, which possess both male and female structures. Emerging developmental genetic data, combined with evidence from comparative morphology, ontogeny and palaeobotany, provide new insights into the evolution of both cones and flowers, and prompt novel strategies for understanding seed-plant evolution. Copyright © 2010 Elsevier Ltd. All rights reserved.

Role of quinate dehydrogenase in quinic acid metabolism in conifers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Osipov, V.I.; Shein, I.V.

1986-08-10

Quinate dehydrogenase was isolated from young needles of the Siberian larch and partially purified by ammonium sulfate fractionation. It was found that in conifers, in contrast to other plants, quinate dehydrogenase is active both with NAD and with NADP. The values of K/sub m/ for quinate and NADP were 1.8 and 0.18 mM. The enzyme exhibits maximum activity at pH 9.0. It was assumed that NADP-dependent quinate dehydrogenase is responsible for quinic acid synthesis. The special features of the organization and regulation of the initial stages of the shikimate pathway in conifers are discussed.

Hughmillerites vancouverensis sp. nov. and the Cretaceous diversification of Cupressaceae.

PubMed

Atkinson, Brian A; Rothwell, Gar W; Stockey, Ruth A

2014-12-01

• Two ovulate conifer cones, one of which is attached terminally to a short leafy shoot, reveal the presence of a new species of Hughmillerites in the Early Cretaceous Apple Bay flora of Vancouver Island, British Columbia, Canada. This ancient conifer expands the diversity of Cupressaceae in the Mesozoic and reveals details about the evolution of Subfamily: Cunninghamioideae.• Specimens were studied from anatomical sections prepared using the cellulose acetate peel technique.• Vegetative shoots have helically arranged leaves that are Cunninghamia-like. Seed cones have many helically arranged bract/scale complexes in which the bract is larger than the ovuliferous scale. Each ovuliferous scale has three free tips that separate from the bract immediately distal to an inverted seed. Several ovuliferous scales show interseminal ridges between seeds.• This study documents a new extinct species of cunninghamioid conifers, Hughmillerites vancouverensis, expanding the record of the genus from the Late Jurassic to the Early Cretaceous. This new extinct species emphasizes the important role that conifers from subfamily Cunninghamioideae played in the initial evolutionary radiation of Cupressaceae. In light of recent findings in conifer regulatory genetics, we use H. vancouverensis to hypothesize that variations of expression in certain gene homologues played an important role in the evolution of the cupressaceous ovuliferous scale. © 2014 Botanical Society of America, Inc.

A long-term assessment of the variability in winter use of dense conifer cover by female white-tailed deer.

PubMed

Delgiudice, Glenn D; Fieberg, John R; Sampson, Barry A

2013-01-01

Long-term studies allow capture of a wide breadth of environmental variability and a broader context within which to maximize our understanding of relationships to specific aspects of wildlife behavior. The goal of our study was to improve our understanding of the biological value of dense conifer cover to deer on winter range relative to snow depth and ambient temperature. We examined variation among deer in their use of dense conifer cover during a 12-year study period as potentially influenced by winter severity and cover availability. Female deer were fitted with a mixture of very high frequency (VHF, n = 267) and Global Positioning System (GPS, n = 24) collars for monitoring use of specific cover types at the population and individual levels, respectively. We developed habitat composites for four study sites. We fit multinomial response models to VHF (daytime) data to describe population-level use patterns as a function of snow depth, ambient temperature, and cover availability. To develop alternative hypotheses regarding expected spatio-temporal patterns in the use of dense conifer cover, we considered two sets of competing sub-hypotheses. The first set addressed whether or not dense conifer cover was limiting on the four study sites. The second set considered four alternative sub-hypotheses regarding the potential influence of snow depth and ambient temperature on space use patterns. Deer use of dense conifer cover increased the most with increasing snow depth and most abruptly on the two sites where it was most available, suggestive of an energy conservation strategy. Deer use of dense cover decreased the most with decreasing temperatures on the sites where it was most available. At all four sites deer made greater daytime use (55 to >80% probability of use) of open vegetation types at the lowest daily minimum temperatures indicating the importance of thermal benefits afforded from increased exposure to solar radiation. Date-time plots of GPS data (24 hr) allowed us to explore individual diurnal and seasonal patterns of habitat use relative to changes in snow depth. There was significant among-animal variability in their propensity to be found in three density classes of conifer cover and other open types, but little difference between diurnal and nocturnal patterns of habitat use. Consistent with our findings reported elsewhere that snow depth has a greater impact on deer survival than ambient temperature, herein our population-level results highlight the importance of dense conifer cover as snow shelter rather than thermal cover. Collectively, our findings suggest that maximizing availability of dense conifer cover in an energetically beneficial arrangement with quality feeding sites should be a prominent component of habitat management for deer.

A Long-Term Assessment of the Variability in Winter Use of Dense Conifer Cover by Female White-Tailed Deer

PubMed Central

DelGiudice, Glenn D.; Fieberg, John R.; Sampson, Barry A.

2013-01-01

Backgound Long-term studies allow capture of a wide breadth of environmental variability and a broader context within which to maximize our understanding of relationships to specific aspects of wildlife behavior. The goal of our study was to improve our understanding of the biological value of dense conifer cover to deer on winter range relative to snow depth and ambient temperature. Methodology/Principal Findings We examined variation among deer in their use of dense conifer cover during a 12-year study period as potentially influenced by winter severity and cover availability. Female deer were fitted with a mixture of very high frequency (VHF, n = 267) and Global Positioning System (GPS, n = 24) collars for monitoring use of specific cover types at the population and individual levels, respectively. We developed habitat composites for four study sites. We fit multinomial response models to VHF (daytime) data to describe population-level use patterns as a function of snow depth, ambient temperature, and cover availability. To develop alternative hypotheses regarding expected spatio-temporal patterns in the use of dense conifer cover, we considered two sets of competing sub-hypotheses. The first set addressed whether or not dense conifer cover was limiting on the four study sites. The second set considered four alternative sub-hypotheses regarding the potential influence of snow depth and ambient temperature on space use patterns. Deer use of dense conifer cover increased the most with increasing snow depth and most abruptly on the two sites where it was most available, suggestive of an energy conservation strategy. Deer use of dense cover decreased the most with decreasing temperatures on the sites where it was most available. At all four sites deer made greater daytime use (55 to >80% probability of use) of open vegetation types at the lowest daily minimum temperatures indicating the importance of thermal benefits afforded from increased exposure to solar radiation. Date-time plots of GPS data (24 hr) allowed us to explore individual diurnal and seasonal patterns of habitat use relative to changes in snow depth. There was significant among-animal variability in their propensity to be found in three density classes of conifer cover and other open types, but little difference between diurnal and nocturnal patterns of habitat use. Conclusions/Significance Consistent with our findings reported elsewhere that snow depth has a greater impact on deer survival than ambient temperature, herein our population-level results highlight the importance of dense conifer cover as snow shelter rather than thermal cover. Collectively, our findings suggest that maximizing availability of dense conifer cover in an energetically beneficial arrangement with quality feeding sites should be a prominent component of habitat management for deer. PMID:23785421

Silviculture of mixed conifer forests in eastern Oregon and Washington.

Treesearch

K.W. Seidel; P.H. Cochran

1981-01-01

The silviculture of mixed conifer forests in eastern Oregon and Washington is described. Topics discussed include ecological setting, damaging agents, silviculture, and management. The relevant literature is presented, along with unpublished research, experience, and observations. Research needs are also proposed.

Germination, survival and early growth of conifer seedlings in two habitat types.

Treesearch

Don Minore

1986-01-01

Conifer seeds were sown in clearcut Abies amabilis/Achlys triphylla and Abies amabilis/Vaccinium membranaceum/Xerophyllum tenax habitat types in the McKenzie River basin in Oregon to determine ratios of seeds to established seedlings. Protection from animal...

PHOTOCHEMICAL AIR POLLUTANT EFFECTS ON MIXED CONIFER ECOSYSTEMS

EPA Science Inventory

In 1972, a multi-disciplinary team of ecologists assembled to monitor and analyze some of the ecological consequences of photochemical oxidant air pollutants in California Mixed Conifer Forest ecosystems of the San Bernardino Mountains east of Los Angeles. The purposes included g...

Indicators of cull in western Oregon conifers.

Treesearch

Paul E. Aho

1982-01-01

Descriptions and color photographs of important fungal sporophores (conks), other indicators of cull (wounds), and associated decays in western Oregon conifers are provided to aid timber markers, cruisers, and scalers in identifying them. Cull factors are given for the indicators by tree species.

Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers.

PubMed

Bowe, L M; Coat, G; dePamphilis, C W

2000-04-11

Efforts to resolve Darwin's "abominable mystery"-the origin of angiosperms-have led to the conclusion that Gnetales and various fossil groups are sister to angiosperms, forming the "anthophytes." Morphological homologies, however, are difficult to interpret, and molecular data have not provided clear resolution of relationships among major groups of seed plants. We introduce two sequence data sets from slowly evolving mitochondrial genes, cox1 and atpA, which unambiguously reject the anthophyte hypothesis, favoring instead a close relationship between Gnetales and conifers. Parsimony- and likelihood-based analyses of plastid rbcL and nuclear 18S rDNA alone and with cox1 and atpA also strongly support a gnetophyte-conifer grouping. Surprisingly, three of four genes (all but nuclear rDNA) and combined three-genome analyses also suggest or strongly support Gnetales as derived conifers, sister to Pinaceae. Analyses with outgroups screened to avoid long branches consistently identify all gymnosperms as a monophyletic sister group to angiosperms. Combined three- and four-gene rooted analyses resolve the branching order for the remaining major groups-cycads separate from other gymnosperms first, followed by Ginkgo and then (Gnetales + Pinaceae) sister to a monophyletic group with all other conifer families. The molecular phylogeny strongly conflicts with current interpretations of seed plant morphology, and implies that many similarities between gnetophytes and angiosperms, such as "flower-like" reproductive structures and double fertilization, were independently derived, whereas other characters could emerge as synapomorphies for an expanded conifer group including Gnetales. An initial angiosperm-gymnosperm split implies a long stem lineage preceding the explosive Mesozoic radiation of flowering plants and suggests that angiosperm origins and homologies should be sought among extinct seed plant groups.

Contrasting trait syndromes in angiosperms and conifers are associated with different responses of tree growth to temperature on a large scale.

PubMed

Carnicer, Jofre; Barbeta, Adrià; Sperlich, Dominik; Coll, Marta; Peñuelas, Josep

2013-01-01

Recent large-scale studies of tree growth in the Iberian Peninsula reported contrasting positive and negative effects of temperature in Mediterranean angiosperms and conifers. Here we review the different hypotheses that may explain these trends and propose that the observed contrasting responses of tree growth to temperature in this region could be associated with a continuum of trait differences between angiosperms and conifers. Angiosperm and conifer trees differ in the effects of phenology in their productivity, in their growth allometry, and in their sensitivity to competition. Moreover, angiosperms and conifers significantly differ in hydraulic safety margins, sensitivity of stomatal conductance to vapor-pressure deficit (VPD), xylem recovery capacity or the rate of carbon transfer. These differences could be explained by key features of the xylem such as non-structural carbohydrate content (NSC), wood parenchymal fraction or wood capacitance. We suggest that the reviewed trait differences define two contrasting ecophysiological strategies that may determine qualitatively different growth responses to increased temperature and drought. Improved reciprocal common garden experiments along altitudinal or latitudinal gradients would be key to quantify the relative importance of the different hypotheses reviewed. Finally, we show that warming impacts in this area occur in an ecological context characterized by the advance of forest succession and increased dominance of angiosperm trees over extensive areas. In this context, we examined the empirical relationships between the responses of tree growth to temperature and hydraulic safety margins in angiosperm and coniferous trees. Our findings suggest a future scenario in Mediterranean forests characterized by contrasting demographic responses in conifer and angiosperm trees to both temperature and forest succession, with increased dominance of angiosperm trees, and particularly negative impacts in pines.

Contrasting trait syndromes in angiosperms and conifers are associated with different responses of tree growth to temperature on a large scale

PubMed Central

Carnicer, Jofre; Barbeta, Adrià; Sperlich, Dominik; Coll, Marta; Peñuelas, Josep

2013-01-01

Recent large-scale studies of tree growth in the Iberian Peninsula reported contrasting positive and negative effects of temperature in Mediterranean angiosperms and conifers. Here we review the different hypotheses that may explain these trends and propose that the observed contrasting responses of tree growth to temperature in this region could be associated with a continuum of trait differences between angiosperms and conifers. Angiosperm and conifer trees differ in the effects of phenology in their productivity, in their growth allometry, and in their sensitivity to competition. Moreover, angiosperms and conifers significantly differ in hydraulic safety margins, sensitivity of stomatal conductance to vapor-pressure deficit (VPD), xylem recovery capacity or the rate of carbon transfer. These differences could be explained by key features of the xylem such as non-structural carbohydrate content (NSC), wood parenchymal fraction or wood capacitance. We suggest that the reviewed trait differences define two contrasting ecophysiological strategies that may determine qualitatively different growth responses to increased temperature and drought. Improved reciprocal common garden experiments along altitudinal or latitudinal gradients would be key to quantify the relative importance of the different hypotheses reviewed. Finally, we show that warming impacts in this area occur in an ecological context characterized by the advance of forest succession and increased dominance of angiosperm trees over extensive areas. In this context, we examined the empirical relationships between the responses of tree growth to temperature and hydraulic safety margins in angiosperm and coniferous trees. Our findings suggest a future scenario in Mediterranean forests characterized by contrasting demographic responses in conifer and angiosperm trees to both temperature and forest succession, with increased dominance of angiosperm trees, and particularly negative impacts in pines. PMID:24146668

Using Multi-Temporal Imaging Spectroscopy Data to Detect Drought and Bark Beetle Related Conifer Mortality across the Central Sierra Nevada, California, USA

NASA Astrophysics Data System (ADS)

Tane, Z.; Ramirez, C.; Roberts, D. A.; Koltunov, A.; Sweeney, S.

2016-12-01

There is considerable scientific and public interest in the ongoing drought and bark beetle driven conifer mortality in the Central and Southern Sierra Nevada, the scale of which has not been seen previously in California's recorded history. Just before and during this mortality event (2013-2016), Airborne Visible / Infrared Imaging Spectrometer (AVIRIS) data were acquired seasonally over part of the affected area as part of the HyspIRI Preparatory Mission. In this study, we used 11 AVIRIS flight lines from 8 seasonal flights (from spring 2013 to summer 2015) to detect conifer mortality. In addition to the standard pre-processing completed by NASA's Jet Propulsion Lab, AVIRIS images were co-registered and georeferenced between time steps and images were resampled to the spatial resolution and signal-to-noise ratio expected from the proposed HyspIRI satellite. We used summer 2015 high-spatial resolution WorldView-2 and WorldView-3 images from across the study area to collect training data from five scenes, and independent validation data from five additional scenes. A cover class map developed with a machine-learning algorithm, separated pixels into green conifer, red-attack conifer, and non-conifer dominant cover, yielding a high accuracy (above 85% accuracy on the independent validation data) in the tree mortality final map. Discussion will include the effects of temporal information and input dimensionality on classification accuracy, comparison with multi-spectral classification accuracy, the ecological and forest management implications of this work, incorporating 2016 AVIRS images to detect 2016 mortality, and future work in understanding the spatial patterns underlying the mortality.

Unraveling the Host Plant Alternation of Cacopsylla pruni – Adults but Not Nymphs Can Survive on Conifers Due to Phloem/Xylem Composition

PubMed Central

Gallinger, Jannicke; Gross, Jürgen

2018-01-01

Plant sap feeding insects like psyllids are known to be vectors of phloem dwelling bacteria (‘Candidatus Phytoplasma’ and ‘Ca. Liberibacter’), plant pathogens which cause severe diseases and economically important crop damage. Some univoltine psyllid species have a particular life cycle, within one generation they alternate two times between different host plant species. The plum psyllid Cacopsylla pruni, the vector of European Stone Fruit Yellows (ESFY), one of the most serious pests in European fruit production, migrates to stone fruit orchards (Prunus spp.) for mating and oviposition in early spring. The young adults of the new generation leave the Prunus trees in summer and emigrate to their overwintering hosts like spruce and other conifers. Very little is known about the factors responsible for the regulation of migration, reasons for host alternation, and the behavior of psyllids during their phase of life on conifers. Because insect feeding behavior and host acceptance is driven by different biotic factors, such as olfactory and gustatory cues as well as mechanical barriers, we carried out electrical penetration graph (EPG) recordings and survival bioassays with C. pruni on different conifer species as potential overwintering hosts and analyzed the chemical composition of the respective plant saps. We are the first to show that migrating psyllids do feed on overwintering hosts and that nymphs are able to ingest phloem and xylem sap of coniferous trees, but cannot develop on conifer diet. Analyses of plant saps reveal qualitative differences in the chemical composition between coniferous trees and Prunus as well as within conifer species. These differences are discussed with regard to nutritional needs of psyllid nymphs for proper development, overwintering needs of adults and restriction of ‘Ca. P. prunorum’ to Prunus phloem. PMID:29706983

Branching habit and the allocation of reproductive resources in conifers

PubMed Central

Leslie, Andrew B.

2012-01-01

Background and Aims Correlated relationships between branch thickness, branch density, and twig and leaf size have been used extensively to study the evolution of plant canopy architecture, but fewer studies have explored the impact of these relationships on the allocation of reproductive resources. This study quantifies pollen cone production in conifers, which have similar basic reproductive biology but vary dramatically in branching habit, in order to test how differences in branch diameter influence pollen cone size and the density with which they are deployed in the canopy. Methods Measurements of canopy branch density, the number of cones per branch and cone size were used to estimate the amount of pollen cone tissues produced by 16 species in three major conifer clades. The number of pollen grains produced was also estimated using direct counts from individual pollen cones. Key Results The total amount of pollen cone tissues in the conifer canopy varied little among species and clades, although vegetative traits such as branch thickness, branch density and pollen cone size varied over several orders of magnitude. However, branching habit controls the way these tissues are deployed: taxa with small branches produce small pollen cones at a high density, while taxa with large branches produce large cones relatively sparsely. Conclusions Conifers appear to invest similar amounts of energy in pollen production independent of branching habit. However, similar associations between branch thickness, branch density and pollen cone size are seen across conifers, including members of living and extinct groups not directly studied here. This suggests that reproductive features relating to pollen cone size are in large part a function of the evolution of vegetative morphology and branching habit. PMID:22782240

Water transport dynamics in trees and stands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pallardy, S.G.; Cermak, J.; Ewers, F.W.

1995-07-01

Water transport dynamics in trees and stands of conifers have certain features that are characteristic of this group and are at least rare among angiosperms. Among these features is the xylem transport system that is dependent on tracheids for long-distance water transport. Tracheid-containing xylem is relatively inefficient, a property that can reduce submaximum allowable rates of gas exchange, but tracheids also offer substantial capacity for water storage and high resistance to freezing-induced dysfunction. Thus, they are quite compatible with the typical evergreen habit and long transpiration season of conifers. At the stand level, canopy transpiration in conifers is primarily controlledmore » by stomatal conductance. In contrast, in dense canopies of angio-sperms, particularly those of tropical forests with limited air mixing, stand transpiration is limited by radiation input rather than by stomatal control. Because of their evergreen habit a greater proportion of evapotranspiration in conifer forests is associated with evaporation of water intercepted by the tree crowns. Other features of transport dynamics are characteristic of most conifers, but are not unique to this group. Among these features are typically shallow root systems that often must supply water in winter to replace transpiration needs of evergreen species, common occurrence of mycorrhizae that enhance mineral and water uptake, and drought tolerance adaptations that include elements of both dehydration avoidance (e.g., stomatal closure under water stress, shifts in allocation of dry matter to below-ground sinks) and dehydration tolerance (e.g., capacity for acclimation of photosynthetic apparatus to drought, osmotic adjustment). Transpiration rates from conifer foliage often are lower than those of deciduous angiosperms, probably because of the lower maximum capacity of tracheid-bearing xylem to transport water.« less

Management options for mitigating Nitrogen (N) losses from N-saturated mixed-conifer forests in California

Treesearch

Benjamin S. Gimeno; Fengming Yuan; Mark E. Fenn; Thomas Meixner

2009-01-01

Mixed-conifer forests of southern California are exposed to nitrogen (N) deposition levels that impair carbon (C) and N cycling, enhance forest flammability, increase the risk of fire occurrence and air pollution emissions in fire, and increase nitrate...

Root cold hardiness and native distribution of subalpine conifers

Treesearch

Mark D. Coleman; Thomas M. Hinckley; Geoffrey McNaughton; Barbara A. Smit

1992-01-01

Root and needle cold hardiness were compared in seedlings of subalpine conifers to determine if differences existed among species originating from either cold continental climates or mild maritime climates. Abies amabilis (Dougl.) Carr. and Tsuga mertensiana (Bong.) Carr. are exclusively distributed in maritime environments,...

Nomenclature of nearctic conifer-feeding choristoneura (Lepidoptera: tortricidae): historical review and present status.

Treesearch

Jerry A. Powell

1980-01-01

There have been 18 species-group names proposed for Nearctic conifer-feeding moths in the genus Choristoneura. Of these, houstonana (Grote) and its synonym, retana (Walsingham), apply to Cupressaceae-feeding populations now assigned to Cudonigera Obraztsov & Powell. The remaining...

Sugar export limits size of conifer needles

NASA Astrophysics Data System (ADS)

Rademaker, Hanna; Zwieniecki, Maciej A.; Bohr, Tomas; Jensen, Kaare H.

2017-04-01

Plant leaf size varies by more than three orders of magnitude, from a few millimeters to over one meter. Conifer leaves, however, are relatively short and the majority of needles are no longer than 6 cm. The reason for the strong confinement of the trait-space is unknown. We show that sugars produced near the tip of long needles cannot be exported efficiently, because the pressure required to drive vascular flow would exceed the greatest available pressure (the osmotic pressure). This basic constraint leads to the formation of an inactive region of stagnant fluid near the needle tip, which does not contribute to sugar flow. Remarkably, we find that the size of the active part does not scale with needle length. We predict a single maximum needle size of 5 cm, in accord with data from 519 conifer species. This could help rationalize the recent observation that conifers have significantly smaller leaves than angiosperms, and provide a biophysical explanation for this intriguing difference between the two largest groups of plants.

Predictive habitat models derived from nest-box occupancy for the endangered Carolina northern flying squirrel in the southern Appalachians

USGS Publications Warehouse

Ford, W. Mark; Evans, A.M.; Odom, Richard H.; Rodrigue, Jane L.; Kelly, C.A.; Abaid, Nicole; Diggins, Corinne A.; Newcomb, Doug

2016-01-01

In the southern Appalachians, artificial nest-boxes are used to survey for the endangered Carolina northern flying squirrel (CNFS; Glaucomys sabrinus coloratus), a disjunct subspecies associated with high elevation (>1385 m) forests. Using environmental parameters diagnostic of squirrel habitat, we created 35 a priori occupancy models in the program PRESENCE for boxes surveyed in western North Carolina, 1996-2011. Our best approximating model showed CNFS denning associated with sheltered landforms and montane conifers, primarily red spruce Picea rubens. As sheltering decreased, decreasing distance to conifers was important. Area with a high probability (>0.5) of occupancy was distributed over 18662 ha of habitat, mostly across 10 mountain ranges. Because nest-box surveys underrepresented areas >1750 m and CNFS forage in conifers, we combined areas of high occupancy with conifer GIS coverages to create an additional distribution model of likely habitat. Regionally, above 1385 m, we determined that 31795 ha could be occupied by CNFS. Known occupied patches ranged from

Evergreen coniferous forests of the pacific northwest.

PubMed

Waring, R H; Franklin, J F

1979-06-29

The massive, evergreen coniferous forests in the Pacific Northwest are unique among temperate forest regions of the world. The region's forests escaped decimation during Pleistocene glaciation; they are now dominated by a few broadly distributed and well-adapted conifers that grow to large size and great age. Large trees with evergreen needle- or scale-like leaves have distinct advantages under the current climatic regime. Photosynthesis and nutrient uptake and storage are possible during the relatively warm, wet fall and winter months. High evaporative demand during the warm, dry summer reduces photosynthesis. Deciduous hardwoods are repeatedly at a disadvantage in competing with conifers in the regional climate. Their photosynthesis is predominantly limited to the growing season when evaporative demand is high and water is often limiting. Most nutrients needed are also less available at this time. The large size attained by conifers provides a buffer against environmental stress (especially for nutrients and moisture). The long duration between destructive fires and storms permits conifers to outgrow hardwoods with more limited stature and life spans.

Leaf wax composition and carbon isotopes vary among major conifer groups

NASA Astrophysics Data System (ADS)

Diefendorf, Aaron F.; Leslie, Andrew B.; Wing, Scott L.

2015-12-01

Leaf waxes (e.g. n-alkanes, n-alkanoic acids) and their carbon isotopes (δ13C) are commonly used to track past changes in the carbon cycle, water availability, and plant ecophysiology. Previous studies indicated that conifers have lower n-alkane concentrations than angiosperms and that 13C fractionation during n-alkane synthesis (εn-alkane) is smaller than in angiosperms. These prior studies, however, sampled a limited phylogenetic and geographic subset of conifers, leaving out many important subtropical and Southern Hemisphere groups that were once widespread and common components of fossil assemblages. To expand on previous work, we collected 43 conifer species (and Ginkgo biloba) from the University of California Botanical Garden at Berkeley, sampling all extant conifer families and almost two-thirds of extant genera. We find that Pinaceae, including many North American species used in previous studies, have very low or no n-alkanes. However, other conifer groups have significant concentrations of n-alkanes, especially Southern Hemisphere Araucariaceae and Podocarpaceae (monkey puzzles, Norfolk Island pines, and yellowwoods), and many species of Cupressaceae (junipers and relatives). Within the Cupressaceae, we find total n-alkane concentrations are high in subfamilies Cupressoideae and Callitroideae, but significantly lower in the early diverging taxodioid lineages (including bald cypress and redwood). Individual n-alkane chain lengths have a weak phylogenetic signal, except for n-C29 alkane, but when combined using average chain length (ACL), a strong phylogenetic signal emerges. The strong phylogenetic signal in ACL, observed in the context of a common growth environment for all plants we sampled, suggests that ACL is strongly influenced by factors other than climate. An analysis of εn-alkane indicates a strong phylogenetic signal in which the smallest biosynthetic fractionation occurs in Pinaceae and the largest in Taxaceae (yews and relatives). The relationship between phylogeny and εn-alkane may be related to differences in carbon metabolism among conifer clades. These results have important implications for interpreting n-alkane δ13C values in sedimentary archives, especially outside of North America.

Two tropical conifers show strong growth and water-use efficiency responses to altered CO2 concentration.

PubMed

Dalling, James W; Cernusak, Lucas A; Winter, Klaus; Aranda, Jorge; Garcia, Milton; Virgo, Aurelio; Cheesman, Alexander W; Baresch, Andres; Jaramillo, Carlos; Turner, Benjamin L

2016-11-01

Conifers dominated wet lowland tropical forests 100 million years ago (MYA). With a few exceptions in the Podocarpaceae and Araucariaceae, conifers are now absent from this biome. This shift to angiosperm dominance also coincided with a large decline in atmospheric CO 2 concentration (c a ). We compared growth and physiological performance of two lowland tropical angiosperms and conifers at c a levels representing pre-industrial (280 ppm), ambient (400 ppm) and Eocene (800 ppm) conditions to explore how differences in c a affect the growth and water-use efficiency (WUE) of seedlings from these groups. Two conifers (Araucaria heterophylla and Podocarpus guatemalensis) and two angiosperm trees (Tabebuia rosea and Chrysophyllum cainito) were grown in climate-controlled glasshouses in Panama. Growth, photosynthetic rates, nutrient uptake, and nutrient use and water-use efficiencies were measured. Podocarpus seedlings showed a stronger (66 %) increase in relative growth rate with increasing c a relative to Araucaria (19 %) and the angiosperms (no growth enhancement). The response of Podocarpus is consistent with expectations for species with conservative growth traits and low mesophyll diffusion conductance. While previous work has shown limited stomatal response of conifers to c a , we found that the two conifers had significantly greater increases in leaf and whole-plant WUE than the angiosperms, reflecting increased photosynthetic rate and reduced stomatal conductance. Foliar nitrogen isotope ratios (δ 15 N) and soil nitrate concentrations indicated a preference in Podocarpus for ammonium over nitrate, which may impact nitrogen uptake relative to nitrate assimilators under high c a SIGNIFICANCE: Podocarps colonized tropical forests after angiosperms achieved dominance and are now restricted to infertile soils. Although limited to a single species, our data suggest that higher c a may have been favourable for podocarp colonization of tropical South America 60 MYA, while plasticity in photosynthetic capacity and WUE may help account for their continued persistence under large changes in c a since the Eocene. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Determination of variability in leaf biomass densities of conifers and mixed conifers under different environmental conditions in the San Joaquin Valley air basin. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Temple, P.J.; Mutters, R.J.; Adams, C.

1995-06-01

Biomass sampling plots were established at 29 locations within the dominant vegetation zones of the study area. Estimates of foliar biomass were made for each plot by three independent methods: regression analysis on the basis of tree diameter, calculation of the amount of light intercepted by the leaf canopy, and extrapolation from branch leaf area. Multivariate regression analysis was used to relate these foliar biomass estimates for oak plots and conifer plots to several independent predictor variables, including elevation, slope, aspect, temperature, precipitation, and soil chemical characteristics.

Data set on the effects of conifer control and slash burning on soil carbon, total N, organic matter and extractable micro-nutrients.

PubMed

Bates, Jonathan D; Davies, Kirk W

2017-10-01

Conifer control in sagebrush steppe of the western United States causes various levels of site disturbance influencing vegetation recovery and resource availability. The data set presented in this article include growing season availability of soil micronutrients and levels of total soil carbon, organic matter, and N spanning a six year period following western juniper ( Juniperus occidentalis spp. occidentalis ) reduction by mechanical cutting and prescribed fire of western juniper woodlands in southeast Oregon. These data can be useful to further evaluate the impacts of conifer woodland reduction to soil resources in sagebrush steppe plant communities.

Geographic variation in mixed-conifer forest fire regimes in California

Treesearch

Beaty R. Matthew; Taylor Alan H.

2008-01-01

This paper reviews recent research from California on geographic variability in mixed conifer(MC) forest fire regimes. MC forests are typically described as having experienced primarilyfrequent, low to moderate severity burns prior to fire suppression that created a mosaic ofvegetation patches with variable structure. Research...

Montane conifer fuel dynamics, Yosemite National Park

USGS Publications Warehouse

van Wagtendonk, J.W.; Moore, P.E.

1997-01-01

Litter and woody fuel accumulation rates over 7 years for 7 montane Sierra Nevada conifer species, including giant sequoia, ponderosa pine, sugar pine, Jeffrey pine, incense-cedar and white fir. Data are from four sites per size class per species with four size classes each. Nonspatial, georeferenced.

Influences of climate on fire regimes in montane forests of north-western Mexico

Treesearch

Carl N. Skinner; Jack H. Burk; Michael G. Barbour; Ernesto Franco-Vizcaino; Scott L. Stephens

2008-01-01

Aim To identify the influence of interannual and interdecadal climate variation on the occurrence and extent of fires in montane conifer forests of north-western Mexico. Location This study was conducted in Jeffrey pine (Pinus jeffreyi Grev. & Balf.)- dominated mixed-conifer...

Spread and development of Phytophthora ramorum in a California christmas tree farm

Treesearch

Gary A. Chastagner; Kathy Riley; Norm Dart

2008-01-01

The risk of conifers being infected by Phytophthora ramorum under natural conditions is poorly understood. In California, infected conifers commonly occur as understory plants beneath or adjacent to heavily infected plants like California bay laurel (Umbellularia californica). During wet periods, P. ramorum is...

The cellular and molecular biology of conifer embryogenesis.

PubMed

Cairney, John; Pullman, Gerald S

2007-01-01

Gymnosperms and angiosperms are thought to have evolved from a common ancestor c. 300 million yr ago. The manner in which gymnosperms and angiosperms form seeds has diverged and, although broad similarities are evident, the anatomy and cell and molecular biology of embryogenesis in gymnosperms, such as the coniferous trees pine, spruce and fir, differ significantly from those in the most widely studied model angiosperm Arabidopsis thaliana. Molecular analysis of signaling pathways and processes such as programmed cell death and embryo maturation indicates that many developmental pathways are conserved between angiosperms and gymnosperms. Recent genomics research reveals that almost 30% of mRNAs found in developing pine embryos are absent from other conifer expressed sequence tag (EST) collections. These data show that the conifer embryo differs markedly from other gymnosperm tissues studied to date in terms of the range of genes transcribed. Approximately 72% of conifer embryo-expressed genes are found in the Arabidopsis proteome and conifer embryos contain mRNAs of very similar sequence to key genes that regulate seed development in Arabidopsis. However, 1388 loblolly pine (Pinus taeda) embryo ESTs (11.4% of the collection) are novel and, to date, have been found in no other plant. The data imply that, in gymnosperm embryogenesis, differences in structure and development are achieved by subtle molecular interactions, control of spatial and temporal gene expression and the regulating agency of a few unique proteins.

Specific and sensitive detection of the conifer pathogen Gremmeniella abietina by nested PCR

PubMed Central

Zeng, Qing-Yin; Hansson, Per; Wang, Xiao-Ru

2005-01-01

Background Gremmeniella abietina (Lagerb.) Morelet is an ascomycete fungus that causes stem canker and shoot dieback in many conifer species. The fungus is widespread and causes severe damage to forest plantations in Europe, North America and Asia. To facilitate early diagnosis and improve measures to control the spread of the disease, rapid, specific and sensitive detection methods for G. abietina in conifer hosts are needed. Results We designed two pairs of specific primers for G. abietina based on the 18S rDNA sequence variation pattern. These primers were validated against a wide range of fungi and 14 potential conifer hosts. Based on these specific primers, two nested PCR systems were developed. The first system employed universal fungal primers to enrich the fungal DNA targets in the first round, followed by a second round selective amplification of the pathogen. The other system employed G. abietina-specific primers in both PCR steps. Both approaches can detect the presence of G. abietina in composite samples with high sensitivity, as little as 7.5 fg G. abietina DNA in the host genomic background. Conclusion The methods described here are rapid and can be applied directly to a wide range of conifer species, without the need for fungal isolation and cultivation. Therefore, it represents a promising alternative to disease inspection in forest nurseries, plantations and quarantine control facilities. PMID:16280082

The enigma of effective path length for (18) O enrichment in leaf water of conifers.

PubMed

Roden, John; Kahmen, Ansgar; Buchmann, Nina; Siegwolf, Rolf

2015-12-01

The Péclet correction is often used to predict leaf evaporative enrichment and requires an estimate of effective path length (L). Studies to estimate L in conifer needles have produced unexpected patterns based on Péclet theory and leaf anatomy. We exposed seedlings of six conifer species to different vapour pressure deficits (VPD) in controlled climate chambers to produce steady-state leaf water enrichment (in (18) O). We measured leaf gas exchange, stable oxygen isotopic composition (δ(18) O) of input and plant waters as well as leaf anatomical characteristics. Variation in bulk needle water δ(18) O was strongly related to VPD. Conifer needles had large amounts of water within the vascular strand that was potentially unenriched (up to 40%). Both standard Craig-Gordon and Péclet models failed to accurately predict conifer leaf water δ(18) O without taking into consideration the unenriched water in the vascular strand and variable L. Although L was linearly related to mesophyll thickness, large within-species variation prevented the development of generalizations that could allow a broader use of the Péclet effect in predictive models. Our results point to the importance of within needle water pools and isolating mechanisms that need further investigation in order to integrate Péclet corrections with 'two compartment' leaf water concepts. © 2015 John Wiley & Sons Ltd.

Soil fertility affects elemental distribution in needles of the conifer Araucaria angustifolia: A microanalytical study

USDA-ARS?s Scientific Manuscript database

Araucaria angustifolia is a conifer species found in South American subtropical forests that comprises less than 3% of the native vegetation. Thus, little is known concerning the accumulation of nutritional elements in its needles. In this study, scanning electron microscopy (SEM) coupled with energ...

Ethanol accumulation in drought-stressed conifer seedlings

Treesearch

Daniel K. Manter; Rick G. Kelsey

2008-01-01

In this study, we investigated the effect of drought stress on ethanol production and accumulation in tissues from seedlings of three conifers (Douglas-fir, lodgepole pine, and ponderosa pine) with increasing degrees of tolerance to drought stress. Significant ethanol accumulation was only observed in their aerial tissues when severely stressed (water potential

Black Stain Root Disease of Conifers (FIDL)

Treesearch

Paul F. Hessburg; Donald J. Goheen; Robert V. Bega

1995-01-01

The black stain fungus?Leptographium wageneri (Kendrick) Wingfield*?infects and kills several species of western conifers. The fungus colonizes water-conducting tissues of the host's roots, root collars, and lower stems, ultimately blocking the movement of water to foliage. Severely infected trees exhibit wilting symptoms characteristic of vascular wilt diseases...

Restoring southern Ontario forests by managing succession in conifer plantations

Treesearch

William C. Parker; Ken A. Elliott; Daniel C. Dey; Eric Boysen

2008-01-01

Thinning and underplanting of conifer plantations to promote natural succession in southern Ontario's forests for restoration purposes was examined in a young red pine (Pinus resinosa Ait.) plantation. Eleven years after application of five thinning treatments, seedling diameter, height, and stem volume of planted white ash (Fraxinus...

Silviculture of southwestern mixed conifers and aspen: the status of our knowledge

Treesearch

John R. Jones

1974-01-01

Describes the status of our knowledge about mixed conifer silviculture in the interior Southwest. Ecological background is reviewed first, followed by description of silvicultural methods. Relevant literature is discussed, along with observations, experience, and results of unpublished research. Contains unpublished input by subject-matter specialists and southwestern...

The sage-grouse habitat mortgage: effective conifer management in space and time

USDA-ARS?s Scientific Manuscript database

Management of conservation-reliant species can be complicated by the need to manage ecosystem processes that operate at extended temporal horizons. One such process is the role of fire in regulating abundance of expanding conifers that disrupt sage-grouse habitat in the northern Great Basin of the ...

Effect of conifer encroachment into aspen stands on understory biomass

Treesearch

B. R. Stam; J. C. Malechek; D. L. Bartos; J. E. Browns; E. B. Godfrey

2008-01-01

Conifers (Picea and Abies spp.) have replaced aspen (Populus tremuloides Michx.) over much of aspen's historic range in the western United States. We measured the impact of this change upon the production of understory vegetation potentially useful as forage for livestock and wildlife on two southern Utah...

Water dynamics in conifer logs in early stages of decay in the Pacific Northwest, U.S.A

Treesearch

Jay M. Sexton; Mark E. Harmon

2009-01-01

Water dynamics in decaying conifer logs of four species (Abies amabilis [Pacific silver fir], Pseudotsuga menziesii [Douglas-fir], Thuja plicata [western red cedar], and Tsuga heterophylla [western hemlock]) were studied in the Coast Range of Oregon. Measurements were made of...

Air pollution impacts in the mixed conifer forests of southern California

Treesearch

Patrick J. Temple; Andrzej Bytnerowicz; Mark E. Fenn; Mark A. Poth

2005-01-01

Air pollution, principally in the form of photochemical ozone and deposition of nitrogen compounds, has significantly affected mixed conifer forests in the mountains of southern California. Foliar injury, premature needle abscission, crown thinning, and reduced growth and vigor have been well documented, particularly for ponderosa (Pinus ponderosa...

IDENTIFICATION AND EMISSION FACTORS OF MOLECULAR TRACERS IN ORGANIC AEROSOLS FROM BIOMASS BURNING PART 1. TEMPERATE CLIMATE CONIFERS. (R823990)

EPA Science Inventory

Smoke particulate matter from conifers subjected to controlled burning, both under smoldering and flaming conditions, was sampled by high volume air filtration on precleaned quartz fiber filters. The filtered particles were extracted with dichloromethane and the crude extracts...

Rooting of conifer propagules

Treesearch

R.L. Mott

1977-01-01

An outline of the general problems involved with the propagation of elite conifer clones by rooted cuttings is drawn from published reports. New approaches for resolving these problems can come from studies of clone production through tissue culture methods. Probable extension of tissue culture techniques will permit the establishment of clones from adult, proven trees...

Scleroderris Canker of Northern Conifers

Treesearch

Darroll D. Skilling; James T. O' Brien; James A. Bell

1979-01-01

Scleroderris canker, caused by the fungus Gremmeniella abietina-Scleroderris lagerbergii (Lagerb.) Morelet, has caused extensive mortality in conifer plantations and forest nurseries in the northeast and north central United States and eastern Canada. Two strains of the fungus are known in North America. The Lake States strain, present throughout northeastern North...

Prescribing Control in Mixed Conifer Stands Affected by Annosus Root Disease

Treesearch

Gary Petersen

1989-01-01

Tree mortality caused by root diseases constitutes a major drain on Forest productivity of mixed-conifer stands. Factors such as changes in species composition, selective harvesting, unfavorable economic climate, and optimizing of short-term benefits have contributed to current stand conditions. Computer simulation models, such as the "RRMOD Computerized Root...

Caspar Creek study

Treesearch

Robert R. Ziemer; Eugene Kojan; Robert B. Thomas; Robert A. Muller

1966-01-01

In 1961, the cooperative watershed management research program in the Lower Conifer Zone of California was started. Research in the Lower Conifer Zone was designed to obtain information and develop principles to give greater insight into the effect of land management in the Zone upon water quality, floods and sedimentation, water timing, and water yield. The research...

Establishment and growth of native hardwood and conifer seedlings underplanted in thinned Douglas-fir stands.

Treesearch

Kathleen G. Maas-Hebner; William H. Emmingham; David L. Larson; Samuel S. Chan

2005-01-01

Five conifers and two hardwoods native to the Pacific Northwest were planted under four overstory densities of 30-year-old plantations of Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) in the Oregon Coast Range, USA. Stand treatments were unthinned (547 trees ha-1), narrow thin (252 trees ha-1),...

Stand conditions associated with tree regeneration in sierran mixed-conifer forests.

Treesearch

Andrew N. Gray; Harold S.J. Zald; Ruth A. Kern; Malcolm North

2005-01-01

Fire suppression has significantly increased canopy cover, litter depth, and stem density in many western forests, altering microsite conditions that affect tree seedling establishment. We conducted studies in a mixed-conifer forest in the Sierra Nevada, California, to determine relationships between established understory trees and microsite quality, and to examine...

Dynamics of low-temperature acclimation in temperate and boreal conifer foliage in a mild winter climate

Treesearch

G. Richard Strimbeck; Trygve D. Kjellsen; Paul G. Schaberg; Paula F. Murakami

2008-01-01

To provide baseline data for physiological studies of extreme low-temperature (LT) tolerance in boreal conifers, we profiled LT stress responses, liquid nitrogen (LN2)-quench tolerance, and sugar concentrations in foliage of boreal-temperate species pairs in the genera Abies, Picea and Pinus, growing in an...

Armillaria altimontana, a new species from the western interior of North America

Treesearch

Nicholas J. Brazee; Beatriz Ortiz-Santana; Mark T. Banik; Daniel L. Lindner

2012-01-01

Armillaria altimontana, previously considered North American biological species (NABS) X, is described as new. To date, it appears that A. altimontana prefers higher-elevation, mesic sites within the dry, conifer forest zone of western interior North America. This species has been found on hardwoods and conifers and is associated...

Modeling early forest succession following clear-cutting in western Oregon.

Treesearch

Zhiqiang Yang; Warren B. Cohen; Mark E. Harmon

2005-01-01

In the Pacific Northwest, the process of conifer development after stand-replacing disturbance has important implications for many forest processes (e.g., carbon storage, nutrient cycling, and biodiversity). This paper examines conifer development in the Coast Range Province and Western Cascades Province of Oregon using repeat interpretation of historic aerial...

Occurrence and dominance of six Pacific Northwest conifer species

Treesearch

Todd A. Schroeder; Andreas Hamann; Tongli Wang; Nicholas C. Coops

2010-01-01

This study develops near range-wide predictive distribution maps for six important conifer species (Pseudotsuga menziesii, Tsuga heterophylla, Pinus contorta, Thuja plicata, Larix occidentalis, and Picea glauca) using forest inventory data collected across the United States and Canada. Species model accuracies are compared with range size using a rank scoring system. A...

Effectiveness of fungicides in protecting conifers and rhododendrons from Phytophthora ramorum

Treesearch

Gary A. Chastagner; Annie DeBauw; Kathy Riley; Norm Dart

2008-01-01

The effectiveness of 19 fungicides in protecting noble fir, grand fir, and Rhododendron x ?Nova Zembla? foliage from P. ramorum was tested. The tops of conifer seedlings with newly emerging shoots and mature rhododendron leaves were collected from treated plants 7 days after drench applications or 1 day after foliar applications....

Susceptibility of conifer shoots to infection by Phytophthora ramorum

Treesearch

G.A. Chastagner; E.M. Hansen; K.L. Riley; W. Sutton

2006-01-01

Phytophthora ramorum is the pathogen that causes sudden oak death, which was first detected on tanoak in Marin County, California in 1995. The identification of several conifers as hosts of P. ramorum and the increased spread of this pathogen via shipment of ornamental nursery stock has the potential to severely impact the...

Siberian Moth: Potential New Pest

Treesearch

Yuri Baranchikov; Michael Montgomery; Daniel Kucera

1997-01-01

The Siberian moth, Dendrolimus superans Butler (Family Lasiocampidae), is the most destructive defoliator of conifer forests in Northern Asia. Outbreaks defoliate millions of acres and occur at intervals of 8 to 11 years. The larvae feed on most conifers in the pine family, but outbreaks occur in fir, spruce, Siberian pine, and larch forests. The...

Restoring fire to mixed conifer forests in the Northern Cascades

Treesearch

T. J. Leuschen

1996-01-01

Many of the ponderosa pine (Pinus ponderosa) mixed conifer stands in the Methow Valley of north-central Washington have developed understories of Douglas-fir (Pseudotsuga rnenziesii) as a result of fire exclusion. Most of the forest floor has not yet become cluttered with dead woody fuel. Instead, the live biomass has increased and...

Height development of shade-tolerant conifer saplings in multiaged Acadian forest stands

Treesearch

Andrew R. Moores; Robert S. Seymour; Laura S. Kenefic

2007-01-01

Understory growth dynamics of northern conifer species were studied in four stands managed under multiaged silvicultural systems in eastern Maine. Height growth of Picea rubens Sarg., Abies balsamea (L.) Mill., and Tsuga canadensis (L.) Carr. saplings between 0.5 and 6.0 m in height was related to the proportion...

Bushy-tailed woodrat abundance in dry forests of eastern Washington.

Treesearch

John F. Lehmkuhl; Keith D. Kistler; James S. Begley

2006-01-01

We studied bushy-tailed woodrats (Neotonza cinerea occidentalis) in the eastern Washington Cascade Range to estimate their density and survival in 3 typical dry forest cover types. We predicted woodrat density to be high, moderate, and low in mature mixed-conifer forests, young mixed-conifer forests, and open ponderosa pine forests, respectively....

PATTERNS OF NITROGEN AND CARBON STABLE ISOTOPE RATIOS IN MACROFUNGI, PLANTS AND SOILS IN TWO OLD-GROWTH CONIFER FORESTS

EPA Science Inventory

Natural abundance stable isotope ratios represent a potentially valuable tool for studying fungal ecology. We measured 15N and 13C in ectomycorrhizal and saprotrophic macrofungi from two old-growth conifer forests, and in plants, woody debris, and soils. Fungi, plants, and so...

Will Garry oak respond to release from overtopping conifers

Treesearch

Constance A. Harrington; Christel C. Kern

2002-01-01

Garry oak (Quercus garryana) woodlands provide unique habitat for many Pacific Northwest species but these habitats are rapidly disappearing as species composition shifts to conifer or land use changes to urban or agricultural. Many oak trees from former savannas or oak woodlands on Fort Lewis Military Reservation (near Tacoma, WA, USA) are currently...

A Simple Computer Application for the Identification of Conifer Genera

ERIC Educational Resources Information Center

Strain, Steven R.; Chmielewski, Jerry G.

2010-01-01

The National Science Education Standards prescribe that an understanding of the importance of classifying organisms be one component of a student's educational experience in the life sciences. The use of a classification scheme to identify organisms is one way of addressing this goal. We describe Conifer ID, a computer application that assists…

Stereo photo guide for estimating canopy fuel characteristics in conifer stands

Treesearch

Joe H. Scott; Elizabeth D. Reinhardt

2005-01-01

Stereo photographs, hemispherical photographs, and stand data are presented with associated biomass and canopy fuel characteristics for five Interior West conifer stands. Canopy bulk density, canopy base height, canopy biomass by component, available canopy fuel load, and vertical distribution of canopy fuel are presented for each plot at several stages of sampling,...

Rapid analysis of abietanes in conifers

Treesearch

P.J. Kersten; B.J. Kopper; K.F. Raffa; B.L. Illman

2006-01-01

Diterpene resin acids are major constituents of conifer oleoresin and play important roles in tree defense against insects and microbial pathogens. The tricyclic C-20 carboxylic acids are generally classified into two groups, the abietanes and the pimaranes. The abietanes have conjugated double bonds and exhibit characteristic UV spectra. Here, we report the analysis...

Response of conifer-encroached shrublands in the Great Basin to prescribed fire and mechanical treatments

USDA-ARS?s Scientific Manuscript database

In response to the recent expansion of piñon and juniper woodlands into sagebrush steppe communities in the northern Great Basin region, numerous conifer removal projects have been implemented at sites having a wide range of environmental conditions. Response has varied from successful restoration t...

Effect of ozone exposure on seasonal gas exchange of five western conifers

Treesearch

Nancy E. Grulke; Paul R. Miller; Theodor D. Leininger

1998-01-01

Five species of western conifers (Pinus ponderosa, Abies concolor, Pseudotsuga menziesii, Abies lasiocarpa, and Picea engelmannii) were exposed, in two standard open-top exposure chambers per treatment, to charcoal-filtered air and a simulated diurnal ozone exposure profile (120 d sum of 136 ppm-h) to test their relative...

A practical guide to oak release.

Treesearch

Constance A. Harrington; Warren D. Devine

2006-01-01

Oregon white oak savannas and woodlands represent a biological and cultural legacy in the Pacific Northwest. Many Oregon white oak stands are deteriorating owing to invasion and eventual overtopping by Douglas-fir or other conifers. Releasing the shade-intolerant oak trees from overtopping conifers can often restore these oak stands. When planning a release operation,...

Eastern Pine Shoot Borer

Treesearch

Louis F. Wilson

1978-01-01

The eastern pineshoot borer Eucosma gloriola Heinrich 2, also known as the white pine tip moth, American pine shoot moth, white pine shoot borer, and Tordeuse americaine, du pin, injures young conifers in Northeastern North America. Because it infests the new shoots of sapling conifers, this insect is particularly destructive on planted trees destined for the Christmas...

Water sorption-desorption in conifer cuticles: The role of lignin.

PubMed

Reina, José J.; Domínguez, Eva; Heredia, Antonio

2001-07-01

Current information on the type and amount of biopolymers present in the epidermis of conifer species is still insufficient. This work presents the detailed morphology and chemical composition of Araucaria bidwillii cuticle after selective treatments to remove the different types of biopolymers. After removal of the waxes, cutin and polar hydrolyzable components, a lignin-like fraction, which makes up 25% of the initial cuticle weight, was identified by GC-MS and infrared spectroscopy. The isolated lignin is of G type, mainly formed by guaiacyl units. This composition indicates that the conifer cuticle investigated here has similar composition to other conifer-isolated cuticles. Water sorption and desorption by the isolated cuticle and the different cuticle fractions, including lignin, were studied. The analysis of the isotherms, following distinct physicochemical models, gave useful information on the structural and physiological role of the different biopolymers present in the cuticle. Lignin fraction showed both a high water sorption and capability of retaining it in comparision to other cuticle components. Hysteresis effect on water sorption-desorption cycle and water cluster formations has also been studied, and their physiological role discussed.

Predation and protection in the macroevolutionary history of conifer cones

PubMed Central

Leslie, Andrew B.

2011-01-01

Conifers are an excellent group in which to explore how changing ecological interactions may have influenced the allocation of reproductive tissues in seed plants over long time scales, because of their extensive fossil record and their important role in terrestrial ecosystems since the Palaeozoic. Measurements of individual conifer pollen-producing and seed-producing cones from the Pennsylvanian to the Recent show that the relative amount of tissue invested in pollen cones has remained constant through time, while seed cones show a sharp increase in proportional tissue investment in the Jurassic that has continued to intensify to the present day. Since seed size in conifers has remained similar through time, this increase reflects greater investment in protective cone tissues such as robust, tightly packed scales. This shift in morphology and tissue allocation is broadly concurrent with the appearance of new vertebrate groups capable of browsing in tree canopies, as well as a diversification of insect-feeding strategies, suggesting that an important change in plant–animal interactions occurred over the Mesozoic that favoured an increase in seed cone protective tissues. PMID:21345864

Systematic Error in Seed Plant Phylogenomics

PubMed Central

Zhong, Bojian; Deusch, Oliver; Goremykin, Vadim V.; Penny, David; Biggs, Patrick J.; Atherton, Robin A.; Nikiforova, Svetlana V.; Lockhart, Peter James

2011-01-01

Resolving the closest relatives of Gnetales has been an enigmatic problem in seed plant phylogeny. The problem is known to be difficult because of the extent of divergence between this diverse group of gymnosperms and their closest phylogenetic relatives. Here, we investigate the evolutionary properties of conifer chloroplast DNA sequences. To improve taxon sampling of Cupressophyta (non-Pinaceae conifers), we report sequences from three new chloroplast (cp) genomes of Southern Hemisphere conifers. We have applied a site pattern sorting criterion to study compositional heterogeneity, heterotachy, and the fit of conifer chloroplast genome sequences to a general time reversible + G substitution model. We show that non-time reversible properties of aligned sequence positions in the chloroplast genomes of Gnetales mislead phylogenetic reconstruction of these seed plants. When 2,250 of the most varied sites in our concatenated alignment are excluded, phylogenetic analyses favor a close evolutionary relationship between the Gnetales and Pinaceae—the Gnepine hypothesis. Our analytical protocol provides a useful approach for evaluating the robustness of phylogenomic inferences. Our findings highlight the importance of goodness of fit between substitution model and data for understanding seed plant phylogeny. PMID:22016337

Normalizing gene expression by quantitative PCR during somatic embryogenesis in two representative conifer species: Pinus pinaster and Picea abies.

PubMed

de Vega-Bartol, José J; Santos, Raquen Raissa; Simões, Marta; Miguel, Célia M

2013-05-01

Suitable internal control genes to normalize qPCR data from different stages of embryo development and germination were identified in two representative conifer species. Clonal propagation by somatic embryogenesis has a great application potentiality in conifers. Quantitative PCR (qPCR) is widely used for gene expression analysis during somatic embryogenesis and embryo germination. No single reference gene is universal, so a systematic characterization of endogenous genes for concrete conditions is fundamental for accuracy. We identified suitable internal control genes to normalize qPCR data obtained at different steps of somatic embryogenesis (embryonal mass proliferation, embryo maturation and germination) in two representative conifer species, Pinus pinaster and Picea abies. Candidate genes included endogenous genes commonly used in conifers, genes previously tested in model plants, and genes with a lower variation of the expression along embryo development according to genome-wide transcript profiling studies. Three different algorithms were used to evaluate expression stability. The geometric average of the expression values of elongation factor-1α, α-tubulin and histone 3 in P. pinaster, and elongation factor-1α, α-tubulin, adenosine kinase and CAC in P. abies were adequate for expression studies throughout somatic embryogenesis. However, improved accuracy was achieved when using other gene combinations in experiments with samples at a single developmental stage. The importance of studies selecting reference genes to use in different tissues or developmental stages within one or close species, and the instability of commonly used reference genes, is highlighted.

Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers.

PubMed

Chaw, S M; Parkinson, C L; Cheng, Y; Vincent, T M; Palmer, J D

2000-04-11

Phylogenetic relationships among the five groups of extant seed plants are presently quite unclear. For example, morphological studies consistently identify the Gnetales as the extant sister group to angiosperms (the so-called "anthophyte" hypothesis), whereas a number of molecular studies recover gymnosperm monophyly, and few agree with the morphology-based placement of Gnetales. To better resolve these and other unsettled issues, we have generated a new molecular data set of mitochondrial small subunit rRNA sequences, and have analyzed these data together with comparable data sets for the nuclear small subunit rRNA gene and the chloroplast rbcL gene. All nuclear analyses strongly ally Gnetales with a monophyletic conifers, whereas all mitochondrial analyses and those chloroplast analyses that take into account saturation of third-codon position transitions actually place Gnetales within conifers, as the sister group to the Pinaceae. Combined analyses of all three genes strongly support this latter relationship, which to our knowledge has never been suggested before. The combined analyses also strongly support monophyly of extant gymnosperms, with cycads identified as the basal-most group of gymnosperms, Ginkgo as the next basal, and all conifers except for Pinaceae as sister to the Gnetales + Pinaceae clade. According to these findings, the Gnetales may be viewed as extremely divergent conifers, and the many morphological similarities between angiosperms and Gnetales (e.g., double fertilization and flower-like reproductive structures) arose independently.

Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers

PubMed Central

Chaw, Shu-Miaw; Parkinson, Christopher L.; Cheng, Yuchang; Vincent, Thomas M.; Palmer, Jeffrey D.

2000-01-01

Phylogenetic relationships among the five groups of extant seed plants are presently quite unclear. For example, morphological studies consistently identify the Gnetales as the extant sister group to angiosperms (the so-called “anthophyte” hypothesis), whereas a number of molecular studies recover gymnosperm monophyly, and few agree with the morphology-based placement of Gnetales. To better resolve these and other unsettled issues, we have generated a new molecular data set of mitochondrial small subunit rRNA sequences, and have analyzed these data together with comparable data sets for the nuclear small subunit rRNA gene and the chloroplast rbcL gene. All nuclear analyses strongly ally Gnetales with a monophyletic conifers, whereas all mitochondrial analyses and those chloroplast analyses that take into account saturation of third-codon position transitions actually place Gnetales within conifers, as the sister group to the Pinaceae. Combined analyses of all three genes strongly support this latter relationship, which to our knowledge has never been suggested before. The combined analyses also strongly support monophyly of extant gymnosperms, with cycads identified as the basal-most group of gymnosperms, Ginkgo as the next basal, and all conifers except for Pinaceae as sister to the Gnetales + Pinaceae clade. According to these findings, the Gnetales may be viewed as extremely divergent conifers, and the many morphological similarities between angiosperms and Gnetales (e.g., double fertilization and flower-like reproductive structures) arose independently. PMID:10760277

Conifers have a unique small RNA silencing signature

PubMed Central

Dolgosheina, Elena V.; Morin, Ryan D.; Aksay, Gozde; Sahinalp, S. Cenk; Magrini, Vincent; Mardis, Elaine R.; Mattsson, Jim; Unrau, Peter J.

2008-01-01

Plants produce small RNAs to negatively regulate genes, viral nucleic acids, and repetitive elements at either the transcriptional or post-transcriptional level in a process that is referred to as RNA silencing. While RNA silencing has been extensively studied across the different phyla of the animal kingdom (e.g., mouse, fly, worm), similar studies in the plant kingdom have focused primarily on angiosperms, thus limiting evolutionary studies of RNA silencing in plants. Here we report on an unexpected phylogenetic difference in the size distribution of small RNAs among the vascular plants. By extracting total RNA from freshly growing shoot tissue, we conducted a survey of small RNAs in 24 vascular plant species. We find that conifers, which radiated from the other seed-bearing plants ∼260 million years ago, fail to produce significant amounts of 24-nucleotide (nt) RNAs that are known to guide DNA methylation and heterochromatin formation in angiosperms. Instead, they synthesize a diverse population of small RNAs that are exactly 21-nt long. This finding was confirmed by high-throughput sequencing of the small RNA sequences from a conifer, Pinus contorta. A conifer EST search revealed the presence of a novel Dicer-like (DCL) family, which may be responsible for the observed change in small RNA expression. No evidence for DCL3, an enzyme that matures 24-nt RNAs in angiosperms, was found. We hypothesize that the diverse class of 21-nt RNAs found in conifers may help to maintain organization of their unusually large genomes. PMID:18566193

Conifers have a unique small RNA silencing signature.

PubMed

Dolgosheina, Elena V; Morin, Ryan D; Aksay, Gozde; Sahinalp, S Cenk; Magrini, Vincent; Mardis, Elaine R; Mattsson, Jim; Unrau, Peter J

2008-08-01

Plants produce small RNAs to negatively regulate genes, viral nucleic acids, and repetitive elements at either the transcriptional or post-transcriptional level in a process that is referred to as RNA silencing. While RNA silencing has been extensively studied across the different phyla of the animal kingdom (e.g., mouse, fly, worm), similar studies in the plant kingdom have focused primarily on angiosperms, thus limiting evolutionary studies of RNA silencing in plants. Here we report on an unexpected phylogenetic difference in the size distribution of small RNAs among the vascular plants. By extracting total RNA from freshly growing shoot tissue, we conducted a survey of small RNAs in 24 vascular plant species. We find that conifers, which radiated from the other seed-bearing plants approximately 260 million years ago, fail to produce significant amounts of 24-nucleotide (nt) RNAs that are known to guide DNA methylation and heterochromatin formation in angiosperms. Instead, they synthesize a diverse population of small RNAs that are exactly 21-nt long. This finding was confirmed by high-throughput sequencing of the small RNA sequences from a conifer, Pinus contorta. A conifer EST search revealed the presence of a novel Dicer-like (DCL) family, which may be responsible for the observed change in small RNA expression. No evidence for DCL3, an enzyme that matures 24-nt RNAs in angiosperms, was found. We hypothesize that the diverse class of 21-nt RNAs found in conifers may help to maintain organization of their unusually large genomes.

A low diversity, seasonal tropical landscape dominated by conifers and peltasperms: Early Permian Abo Formation, New Mexico

USGS Publications Warehouse

DiMichele, W.A.; Chaney, D.S.; Nelson, W.J.; Lucas, S.G.; Looy, C.V.; Quick, K.; Jun, W.

2007-01-01

Walchian conifers (Walchia piniformis Sternberg, 1825) and peltasperms similar to Supaia thinnfeldioides White and cf. Supaia anomala White dominate floodplain deposits of a narrow stratigraphic interval of the middle Abo Formation, Lower Permian of central New Mexico. The plant fossils occur in thinly bedded units up to two meters thick, consisting of coarse siltstone to very fine sandstone with clay partings. Bedding is primarily tabular, thin, and bears rare ripple marks and trough cross beds. Bedding surfaces display mud cracks, raindrop imprints, horizontal and vertical burrows of invertebrates, and footprints of terrestrial vertebrates. These features indicate intermittent and generally unchannelized stream flow, with repeated exposure to air. Channels appear to have cannibalized one another on a slowly subsiding coastal plain. Conifers are dominant at three collecting sites and at three others Supaia dominates. Although each of these genera occurs in assemblages dominated by the other, there are no truly co-dominant assemblages. This pattern suggests alternative explanations. Landscapes could have consisted of a small-scale vegetational patchwork dominated almost monospecifically in any one patch, meaning that these plants could have coexisted across the landscape. On the other hand, conifer and supaioid dominance could have been temporally distinct, occurring during different episodes of sedimentation; although in the field there are no noticeable sedimentological differences between conifer-dominated and Supaia-dominated channel deposits, they may represent slightly different climatic regimes. The considerable morphological differences between conifers and Supaia suggest that the floristic patterns are not a taphonomic effect of the loss of a significant part of the original biodiversity. In general, the climate under which this vegetation developed appears to have been relatively warm and arid, based on the geology (pervasive red color [oxidation], calcrete in paleosols, and abundant mud cracks evidencing ephemeral flow in streams) and biology (low floristic diversity, xeromorphic plant physiognomies). ?? 2006 Elsevier B.V. All rights reserved.

Historical dominance of low-severity fire in dry and wet mixed-conifer forest habitats of the endangered terrestrial Jemez Mountains salamander (Plethodon neomexicanus)

USGS Publications Warehouse

Margolis, Ellis; Malevich, Steven B.

2016-01-01

Anthropogenic alteration of ecosystem processes confounds forest management and conservation of rare, declining species. Restoration of forest structure and fire hazard reduction are central goals of forest management policy in the western United States, but restoration priorities and treatments have become increasingly contentious. Numerous studies have documented changes in fire regimes, forest stand structure and species composition following a century of fire exclusion in dry, frequent-fire forests of the western U.S. (e.g., ponderosa pine and dry mixed-conifer). In contrast, wet mixed-conifer forests are thought to have historically burned infrequently with mixed- or high-severity fire—resulting in reduced impacts from fire exclusion and low restoration need—but data are limited. In this study we quantified the current forest habitat of the federally endangered, terrestrial Jemez Mountains salamander (Plethodon neomexicanus) and compared it to dendroecological reconstructions of historical habitat (e.g., stand structure and composition), and fire regime parameters along a gradient from upper ponderosa pine to wet mixed-conifer forests. We found that current fire-free intervals in Jemez Mountains salamander habitat (116–165 years) are significantly longer than historical intervals, even in wet mixed-conifer forests. Historical mean fire intervals ranged from 10 to 42 years along the forest gradient. Low-severity fires were historically dominant across all forest types (92 of 102 fires). Although some mixed- or highseverity fire historically occurred at 67% of the plots over the last four centuries, complete mortality within 1.0 ha plots was rare, and asynchronous within and among sites. Climate was an important driver of temporal variability in fire severity, such that mixed- and high-severity fires were associated with more extreme drought than low-severity fires. Tree density in dry conifer forests historically ranged from open (90 trees/ha) to moderately dense (400 trees/ha), but has doubled on average since fire exclusion. Infill of fire-sensitive tree species has contributed to the conversion of historically dry mixedconifer to wet mixed-conifer forest. We conclude that low-severity fire, which has been absent for over a century, was a critical ecosystem process across the forest gradient in Jemez Mountains salamander habitat, and thus is an important element of ecosystem restoration, resilience, and rare species recovery.

Vegetation recovery in slash-pile scars following conifer removal in a grassland-restoration experiment

Treesearch

Charles B. Halpern; Joseph A. Antos; Liam M. Beckman

2014-01-01

A principal challenge to restoring tree-invaded grasslands is the removal of woody biomass. Burning of slash piles to reduce woody residues from forest restoration practices generates intense, prolonged heating, with adverse effects on soils and vegetation. In this study, we examined vegetation responses to pile burning following tree removal from conifer-invaded...

Microsatellite DNA as shared genetic markers among conifer species

Treesearch

C.S. Echt; G.G. Vendramin; C. D. Nelson; Paula E. Marquardt

1999-01-01

Polymerase chain reaction (PCR) primer pairs for 21 simple sequence repeat (SSR) loci in Pinus strobus L, and 6 in Pinus radiata D. Don were evaluated to determine whether SSR marker amplification could be achieved in 1O other conifer species. Eighty percent of SSR primer pairs for (AC) loci that were polymorphic in P. ...

Terrain and vegetation structural influences on local avian species richness in two mixed-conifer forests

Treesearch

Jody C. Vogeler; Andrew T. Hudak; Lee A. Vierling; Jeffrey Evans; Patricia Green; Kerri T. Vierling

2014-01-01

Using remotely-sensed metrics to identify regions containing high animal diversity and/or specific animal species or guilds can help prioritize forest management and conservation objectives across actively managed landscapes. We predicted avian species richness in two mixed conifer forests, Moscow Mountain and Slate Creek, containing different management contexts and...

Growing high quality hardwoods: Plantation trials of mixed hardwood species in Tennessee

Treesearch

Christopher M. Oswalt; Wayne K. Clatterbuck

2011-01-01

Hardwood plantations are becoming increasingly important in the United States. To date, many foresters have relied on a conifer plantation model as the basis of establishing and managing hardwood plantations. The monospecific approach suggested by the conifer plantation model does not appear to provide for the development of quality hardwood logs similar to those found...

Comparing algorithms for estimating foliar biomass of conifers in the Pacific Northwest

Treesearch

Crystal L. Raymond; Donald McKenzie

2013-01-01

Accurate estimates of foliar biomass (FB) are important for quantifying carbon storage in forest ecosystems, but FB is not always reported in regional or national inventories. Foliar biomass also drives key ecological processes in ecosystem models. Published algorithms for estimating FB in conifer species of the Pacific Northwest can yield signifi cantly different...

Compatible management of red alder-conifer ecosystems in southeastern Alaska.

Treesearch

Mark S. Wipfli; Robert L. Deal; Paul E. Hennon; Adelaide C. Johnson; Richard T. Edwards; Toni L. De Santo; Takashi Gomi; Ewa H. Orlikowska; Mason D. Bryant; Mark E. Schultz; Christian LeSage; Ryan Kimbirauskus; David V. D' Amore

2003-01-01

Forest clearcutting has been the primary timber management practice in forests of southeastern Alaska since commercial timber harvesting began in the 1950s, and the dense, even-aged conifer stands that subsequently developed have broad and undesirable consequences for some nontimber resources-most notably, fish and wildlife. Because a few earlier reports suggested that...

Dynamics and pattern of a managed coniferous forest landscape in Oregon.

Treesearch

T.A. Spies; W.J. Ripple; G.A. Bradshaw

1994-01-01

We examined the process of fragmentation in a managed forest landscape by comparing rates and patterns of disturbance (primarily clear-cutting) and regrowth between 1972 and 1988 using Landsat imagery. A 2589-km2 managed forest landscape in western Oregon was classified into two forest types, closed-canopy conifer forest (CF) (typically, > 60% conifer cover) and...

Regeneration in mixed conifer and Douglas-fir shelterwood cuttings in the Cascade Range of Washington.

Treesearch

K.W. Seidel

1983-01-01

A survey of shelterwood cuttings in mixed conifer and Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) forests in the Cascade Range in Washington showed that, on the average, shelterwood units were adequately-stocked with a mixture of advance, natural postharvest, and planted reproduction of a number of species. Shelterwood cuttings in the...

Effects of thinning, residue mastication, and prescribed fire on soil and nutrient budgets in a Sierra Nevada mixed-conifer forest

USDA-ARS?s Scientific Manuscript database

The effects of thinning followed by residue mastication (THIN), prescribed fire (BURN), and thinning plus residue mastication plus burning (T+B) on nutrient budgets and resin-based (plant root simulator [PRS] probe) measurements of soil nutrient availability in a mixed-conifer forest were measured. ...

Effects of thinning, residue mastication, and prescribed fire on soil and nutrient budgets in a Sierra Nevada mixed conifer forest

USDA-ARS?s Scientific Manuscript database

The effects of thinning followed by residue mastication (THIN), prescribed fire (BURN), and thinning plus residue mastication plus burning (T+B) on nutrient budgets and resin-based (plant root simulator [PRS] probe) measurements of soil nutrient availability in a mixed-conifer forest were measured. ...

History of Heterobasidion annosum in Western United States

Treesearch

Richard S. Smith Jr.

1989-01-01

H. annosum was first discovered as a root pathogen of pine in western United States by E. P. Meinecke in 1909. Other early researchers reported it as a root and butt decay of nonresinous conifers in the west. Olson demonstrated its pathogenicity to western conifers and Wagener and Cave described its occurrence and role in the eastside pine forests....

Response of conifer-encroached shrublands in the Great Basin to prescribed fire and mechanical treatments

Treesearch

Richard F. Miller; Jaime Ratchford; Bruce A. Roundy; Robin J. Tausch; April Hulet; Jeanne Chambers

2014-01-01

In response to the recent expansion of pinon and juniper woodlands into sagebrush-steppe communities in the northern Great Basin region, numerous conifer-removal projects have been implemented, primarily to release understory vegetation at sites having a wide range of environmental conditions. Responses to these treatments have varied from successful restoration of...

Changing spatial patterns of stand-replacing fire in California conifer forests

Treesearch

Jens T. Stevens; Brandon M. Collins; Jay D. Miller; Malcolm P. North; Scott L. Stephens

2017-01-01

Stand-replacing fire has profound ecological impacts in conifer forests, yet there is continued uncertainty over how best to describe the scale of stand-replacing effects within individual fires, and how these effects are changing over time. In forests where regeneration following stand-replacing fire depends on seed dispersal from surviving trees, the size and shape...

Trends in snag populations in drought-stressed mixed-conifer and ponderosa pine forests (1997-2007)

Treesearch

Joseph L. Ganey; Scott C. Vojta

2012-01-01

Snags provide important biological legacies, resources for numerous species of native wildlife, and contribute to decay dynamics and ecological processes in forested ecosystems. We monitored trends in snag populations from 1997 to 2007 in drought-stressed mixed-conifer and ponderosa pine (Pinus ponderosa Dougl. ex Laws) forests, northern Arizona. Median snag density...

Lessons learned in historical mapping of conifer and oak in the North Coast

Treesearch

Melissa V. Eitzel; Maggi Kelly; Lenya N. Quinn-Davidson

2015-01-01

Conifer encroachment into oak woodlands is becoming a pressing concern for oak conservation, particularly in California's north coast. We use Object-Based Image Analysis (OBIA) with historical aerial imagery from 1948 and recent high-spatial-resolution images from 2009 to explore the potential for mapping encroachment using remote sensing. We find that pre-...

Cold in the common garden: comparative low-temperature tolerance of boreal and temperate conifer foliage

Treesearch

G. Richard Strimbeck; Trygve D. Kjellsen; Paul G. Schaberg; Paula F. Murakami

2007-01-01

Because they maintain green foliage throughout the winter season, evergreen conifers may face special physiological challenges in a warming world. We assessed the midwinter low-temperature (LT) tolerance of foliage from eight temperate and boreal species in each of the genera Abies, Picea, and Pinus growing in an arboretum in...

Effect of Sugar Maple Root Exudate on Seedlings of Northern Conifer Species

Treesearch

Carl H. Tubbs

1976-01-01

It has been shows that a root exudate of sugar maple reduces the growth of yellow birch. A laboratory test indicated that the growth of northern conifers is also reduced in sugar maple root exudate. Allelopathy may play an important role in survival of species on sites where sugar maple is abundant.

Wood density and growth of some conifers introduced to Hawaii.

Treesearch

Roger G. Skolmen

1963-01-01

The specific gravity of the wood of 14 conifers grown in Hawaii was measured by means of increment cores. Most species were growing in environments quite different from their native habitats. The specific gravity and growth characteristics under several site conditions were compared. Described in some detail are Norfolk-Island-pine, slash pine, Jeffrey pine, jelecote...

Fusarium torreyae sp. nov., a pathogen causing canker disease of Florida torreya (Torreya taxifolia), a critically endangered conifer restricted to northern Florida and southwestern Georgia

USDA-ARS?s Scientific Manuscript database

During a survey for pathogens of Florida torreya (Torreya taxifolia) conducted in 2009, a novel Fusarium species was isolated from cankers affecting this critically endangered conifer whose current range is restricted to northern Florida and southwestern Georgia. Published multilocus molecular phylo...

Recommendations for snag retention in southwestern mixed-conifer and ponderosa pine forests: History and current status

Treesearch

Joseph L. Ganey

2016-01-01

Snags provide habitat for numerous species of wildlife. Several authors have provided recommendations for snag retention in southwestern mixed-conifer and ponderosa pine (Pinus ponderosa) forests. Most recommendations were presented in terms of minimum snag density and/or size. I summarized the history of recommendations for snag retention in these forest...

Restoring forest health: fire and thinning effects on mixed-conifer forests

Treesearch

Malcolm P. North

2006-01-01

Even after 140 years without a fire, mixed-conifer forest such as Teakettle's Experimental Forest has a distinct patch pattern and complex structure. Researcher Malcolm North and colleagues examined the structure and function of these ecosystems and their response to widely used restoration treatments. Collectively the studies found fire was essential to restoring...

Snow catch by conifer crowns

Treesearch

Donald R. Satterlund; Harold F. Haupt

1967-01-01

Study of interception storage of snow by two species of sapling conifers in northern Idaho revealed that cumulative snow catch follows the classical law of autocatakinetic growth, or [equation - see PDF] where I, is interception storage, e is the interception storage capacity of the tree, e is the base of the natural logarithm, k is a constant expressing the rate of...

Allozyme differentiation of intersterility groups of Heterobasidion annosum isolated from conifers in the western United States

Treesearch

W.J. Otrosina; T.E. Chase; F.W. Cobb

1992-01-01

Allozyme analysis was conducted on 64 isolates from basidiocarps of Heterobasidion annosum. The isolates belonged to the "S" and "P" intersterility groups and were collected from five conifer species found in the western United States. Ten allozyme loci distributed among eight enzyme systems were examined. Intersterility groups differed at nine...

Diagnosis of Annosus Root Disease in Mixed Conifer Forests in the Northwestern United States

Treesearch

Craig L. Schmitt

1989-01-01

Recognizing annosus root disease affecting conifers in northwestern United States forests is discussed. Field diagnosis can bemade by observing characteristic stand patterns, wood stain and decay, ectotrophic mycelium, and sporophores. Most seriously affected trees include hemlocks, grand fir, white fir and Pacific silver fir. Ponderosa pine and other true firs may...

A remotely sensed pigment index reveals photosynthetic phenology in evergreen conifers

Treesearch

John A. Gamon; K. Fred Huemmrich; Christopher Y. S. Wong; Ingo Ensminger; Steven Garrity; David Y. Hollinger; Asko Noormets; Josep Peñuelas

2016-01-01

In evergreen conifers, where the foliage amount changes little with season, accurate detection of the underlying “photosynthetic phenology” from satellite remote sensing has been difficult, presenting challenges for global models of ecosystem carbon uptake. Here, we report a close correspondence between seasonally changing foliar pigment levels, expressed as...

Effect of logging on streamflow, sedimentation, and fish habitat

Treesearch

Robert R. Ziemer

1968-01-01

Cooperative Watershed Management research in the Lower Conifer Zone of California started in 1961. Research in the Lower Conifer Zone was designed to obtain information and develop principles about the effect of land management in the Zone upon water quality, floods and sedimentation, water timing, and water yield. The research was conducted by the Pacific Southwest...

Soil moisture and groundwater recharge under a mixed conifer forest

Treesearch

Robert R. Ziemer

1978-01-01

The depletion of soil moisture within the surface 7 m by a mixed conifer forest in the Sierra Nevada was measured by the neutron method every 2 weeks during 5 consecutive summers. Soil moisture recharge was measured periodically during the intervening winters. Groundwater fluctuations within the surface 17 m were continuously recorded during the same period.

Experimental herbicidal control of Dwarfmistletoe on some California conifers

Treesearch

Clarence R. Quick

1964-01-01

Dwarfmistletoes (Arceuthobium spp. ) parasitize and damage most native conifers of California. The study of chemical control for dwarfmistletoe on pines and true firs was resumed in 1959. Over the past 5 years, 246 tests on 2, 516 trees of five species have been started, Many phenoxy herbicides and some other materials were applied as sprays in fuel...

Management of Westside Washington Conifer Stands Infected with Heterobasidion annosum

Treesearch

Elvira Young

1989-01-01

Timber stands in western Washington are managed for many purposes. Such stands yield commodity and noncommodity outputs, such as recreation, wildlife, visual resources, or watershed benefits, and often from the same stands. Annosus root disease is widespread in many mixed conifer stands within the western hemlock, mountain hemlock, and Pacific silver fir zones west of...

Semiochemical sabotage: behavioral chemicals for protection of western conifers from bark beetles

Treesearch

Nancy. E. Gillette; A. Steve Munson

2009-01-01

The discovery and elucidation of volatile behavioral chemicals used by bark beetles to locate hosts and mates has revealed a rich potential for humans to sabotage beetle host-finding and reproduction. Here, we present a description of currently available semiochemical methods for use in monitoring and controlling bark beetle pests in western conifer forests. Delivery...

Resilience of California black oak experiencing frequent fire: regeneration following two large wildfires 12 years apart

Treesearch

Ethan J. Hammett; Martin W. Ritchie; John-Pascal Berrill

2017-01-01

Historically, oak woodlands in western North America were maintained by frequent fire that killed competing conifers. Today, these woodlands are often in decline as competition from conifers intensifies. Among oak species affected is the ecologically important California black oak (Quercus kelloggii Newberry). Within its range, large high-severity...

Population isolation results in low genetic variation and high differentiation in Carolina hemlock (tsuga caroliniana), an imperiled southern Appalachian conifer

Treesearch

Kevin M. Potter; Lia Campbell; Sedley A. Josserand; C. Dana Nelson; Robert M. Jetton

2017-01-01

Carolina hemlock (Tsuga caroliniana) is a rare conifer species that grows in small, isolated populations in the southern Appalachian Mountains of Virginia, North Carolina, South Carolina, Tennessee, and Georgia. The species is additionally imperiled by the hemlock woolly adelgid (Adelges tsugae), an invasive insect that can...

Contrasting spatial patterns in active-fire and fire-suppressed Mediterranean climate old-growth mixed conifer forests

Treesearch

Danny L. Fry; Scott L. Stephens; Brandon M. Collins; Malcolm North; Ernesto Franco-Vizcaino; Samantha J. Gill

2014-01-01

In Mediterranean environments in western North America, historic fire regimes in frequent-fire conifer forests are highly variable both temporally and spatially. This complexity influenced forest structure and spatial patterns, but some of this diversity has been lost due to anthropogenic disruption of ecosystem processes, including fire. Information from reference...

Conversion of conifer wastes into edible and medicinal mushrooms.

Treesearch

Suki C. Croan

2004-01-01

Mushroom-producing white-rot fungi can be used to convert woodwaste into gourmet and medicinal mushrooms. White-rot fungi do not always readily colonize on conifer wood because of its extractives content. This study evaluated the resinous extractive content of loblolly pine (Pinus taeda), ponderosa pine (Pinus ponderosa), and an unknown species of southern yellow pine...

Data set on the effects of conifer control and slash burning on soil carbon, total N, organic matter and extractable micro-nutrients

USDA-ARS?s Scientific Manuscript database

Conifer control in sagebrush steppe of the western United States causes various levels of site disturbance influencing vegetation recovery and resource availability. The data presented in this article are growing season availability of soil micronutrients and levels of total soil carbon, organic ma...

Evaluating potential trade-offs among fuel treatment strategies in mixed-conifer forests of the Sierra Nevada

Treesearch

Jens T. Stevens; Brandon M. Collins; Jonathan W. Long; Malcolm P. North; Susan J. Prichard; Leland W. Tarnay; Angela M. White

2016-01-01

Fuel treatments in fire-suppressed mixed-conifer forests are designed to moderate potential wildfire behavior and effects. However, the objectives for modifying potential fire effects can vary widely, from improving fire suppression efforts and protecting infrastructure, to reintroducing low-severity fire, to restoring and maintaining variable forest structure and...

Red tree vole / Arborimus longicaudus.

Treesearch

A.B. Carey

1999-01-01

The secretive nocturnal red tree vole is one of least studied and most specialized voles in North America. It is found only along the coast and in the Western Cascades of Oregon where it spends most of its life in the tops of tall conifers. eating needles of Douglas-fir (Pseudotsuga menziesii) and. Occasionally, other conifers. The voles clip small...

Board foot volumes of young growth mixed conifer timber

Treesearch

W. L. Jackson

1961-01-01

Board foot volumes have been determined for ponderosa pine, sugar pine, white fir, and Douglas-fir in 90-year-old mixed-conifer stands on the Challenge Experimental Forest, near Oroville, California. Productivity is high—site index 140 feet at 100 years. Following the technique described by Boe, the scaled volumes of felled trees were plotted on logarithmic...

Biorhythms in conifer seed germination during extended storage

Treesearch

James P. Barnett; N.I. Marnonov

1989-01-01

A proportion of sound seeds of conifer species do not germinate during certain periods of the year, even when conditions are favorable. Mamonov et al. (1986) report that the non-germinating seeds have apparently undergone physiological changes that affected germination. This phenomenon may be due to seasonal periodicity, or biorhythms. As early as the mid-1930'...

Microsatellite DNA as shared genetic markers among conifer species

Treesearch

Craig S. Echt; G.G. Vendramin; C.D. Nelson; P. Marquardt

1999-01-01

Polymerase chain reaction (PCR) primer pairs for 21 simple sequence repeat (SSR) loci in Pinus strobus L. and 6 in Pinus radiata D. Don. were evaluated to determine whether SSR marker amplification could be achieved in 10 other conifer species. Eighty percent of SSR primer pairs for (AC)n loci that were polymorphic in P. ...

Quantifying the abundance of co-occurring conifers along Inland Northwest (USA) climate gradients

Treesearch

Gerald E. Rehfeldt; Dennis E. Ferguson; Nicholas L. Crookston

2008-01-01

The occurrence and abundance of conifers along climate gradients in the Inland Northwest (USA) was assessed using data from 5082 field plots, 81% of which were forested. Analyses using the Random Forests classification tree revealed that the sequential distribution of species along an altitudinal gradient could be predicted with reasonable accuracy from a single...

Long-term demographic trends in a fire-suppressed mixed-conifer forest

Treesearch

Carrie R. Levine; Flora Krivak-Tetley; Natalie S. van Doorn; Jolie-Anne S. Ansley; John J. Battles

2016-01-01

In the western United States, forests are experiencing novel environmental conditions related to a changing climate and a suppression of the historical fire regime. Mixed-conifer forests, considered resilient to disturbance due to their heterogeneity in structure and composition, appear to be shifting to a more homogeneous state, but the timescale of these shifts is...

Accuracy and suitability of selected sampling methods within conifer dominated riparian zones

Treesearch

Theresa Marquardt; Hailemariam Temesgen; Paul D. Anderson

2010-01-01

Sixteen sampling alternatives were examined for their performance to quantify selected attributes of overstory conifers in riparian areas of western Oregon. Each alternative was examined at eight headwater forest locations based on 0.52 ha square stem maps. The alternatives were evaluated for selected stand attributes (tree per hectare, basal area per hectare, and...

Clearcutting and natural regeneration: management implications for the northern Sierra Nevada

Treesearch

Philip M. McDonald

1983-01-01

In the young-mature mixed-conifer and hardwood forests of north-central California, a dense and persistent hardwood understory competes with the conifers for space, nutrients, and water. Clear-cutting with intensive site preparation often is the most appropriate silvicultural regeneration method. This report, the result of 20 years of research on the Challenge...

Above- and below-ground effects of aspen clonal regeneration and succession to conifers

Treesearch

Wayne D. Shepperd; Dale L. Bartos; Stephen A. Mata

2001-01-01

Above- and below-ground characteristics were measured and compared for six sets of paired trembling aspen (Populus tremuloides Michx.) clones on the Fishlake National Forest in central Utah. Three self-regenerating clones were compared with three non-regenerating clones and three pure aspen stands were compared with three mixed aspen-conifer stands. Regenerating clones...

Precommercial thinning in a northern conifer stand: 18-year results

Treesearch

John C. Brissette; Robert M., Jr. Frank; Timothy L. Stone; Thomas A. Skratt

1999-01-01

Four levels of precommercial thinning were applied with and without fertilization in a young, even-aged stand of northern conifers in east-central Maine. After 18 years, precommercial thinning resulted in longer and wider crowns and greater survival, growth, and yield of selected crop trees compared to untreated controls. Growth and yield were greater with uniform...

Interim definitions for old growth Douglas-fir and mixed-conifer forests in the Pacific Northwest and California.

Treesearch

J.F. Franklin; F. Hall; W. Laudenslayer; C. Maser; J. Nunan; J. Poppino; C.J. Ralph; T. Spies

1986-01-01

Interim definitions of old-growth forests are provided to guide efforts in land-management planning until comprehensive definitions based on research that is currently underway can be formulated. The basic criteria for identifying old-growth Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) and mixed-conifer forests in western Washington and...

An experimental burn to restore a moth-killed boreal conifer forest, Krasnoyarsk Region, Russia

Treesearch

E.N. Valendik; J.C. Brissette; Ye. K. Kisilyakhov; R.J. Lasko; S.V. Verkhovets; S.T. Eubanks; I.V. Kosov; A. Yu. Lantukh

2006-01-01

Mechanical treatment and prescribed fire were used to restore a mixed conifer stand (Picea-Abies-Pinus) following mortality from an outbreak of Siberian moth (Dendrolimus superans sibiricus). Moth-killed stands often become dominated by Calamagrostis, a sod-forming grass. The large amount of woody debris and the sod hinder coniferous seedling establishment and...

Chapter 6: Creating a basis for watershed management in high elevation forests

Treesearch

Gerald J. Gottfried; Leonard F. DeBano; Peter F. Ffolliott

1999-01-01

Higher mountains and plateaus in the Central Arizona Highlands generally support southwestern mixed conifer forests, associated aspen and spruce-fir forests, and a small acreage of grasslands interspersed among the forested areas. Most of the major rivers in the region originate on headwater watersheds that support mixed conifer forests where annual precipitation,...

Quantum Yields in Mixed-Conifer Forests and Ponderosa Pine Plantations

NASA Astrophysics Data System (ADS)

Wei, L.; Marshall, J. D.; Zhang, J.

2008-12-01

Most process-based physiological models require canopy quantum yield of photosynthesis as a starting point to simulate carbon sequestration and subsequently gross primary production (GPP). The quantum yield is a measure of photosynthetic efficiency expressed in moles of CO2 assimilated per mole of photons absorbed; the process is influenced by environmental factors. In the summer 2008, we measured quantum yields on both sun and shade leaves for four conifer species at five sites within Mica Creek Experimental Watershed (MCEW) in northern Idaho and one conifer species at three sites in northern California. The MCEW forest is typical of mixed conifer stands dominated by grand fir (Abies grandis (Douglas ex D. Don) Lindl.). In northern California, the three sites with contrasting site qualities are ponderosa pine (Pinus ponderosa C. Lawson var. ponderosa) plantations that were experimentally treated with vegetation control, fertilization, and a combination of both. We found that quantum yields in MCEW ranged from ~0.045 to ~0.075 mol CO2 per mol incident photon. However, there were no significant differences between canopy positions, or among sites or tree species. In northern California, the mean value of quantum yield of three sites was 0.051 mol CO2/mol incident photon. No significant difference in quantum yield was found between canopy positions, or among treatments or sites. The results suggest that these conifer species maintain relatively consistent quantum yield in both MCEW and northern California. This consistency simplifies the use of a process-based model to accurately predict forest productivity in these areas.

Tracheid diameter is the key trait determining the extent of freezing-induced embolism in conifers.

PubMed

Pittermann, Jarmila; Sperry, John

2003-09-01

We tested the hypotheses that freezing-induced embolism is related to conduit diameter, and that conifers and angiosperms with conduits of equivalent diameter will exhibit similar losses of hydraulic conductivity in response to freezing. We surveyed the freeze-thaw response of conifers with a broad range of tracheid diameters by subjecting wood segments (root, stem and trunk wood) to a freeze-thaw cycle at -0.5 MPa in a centrifuge. Embolism increased as mean tracheid diameter exceeded 30 microm. Tracheids with a critical diameter greater than 43 microm were calculated to embolize in response to freezing and thawing at a xylem pressure of -0.5 MPa. To confirm that freezing-induced embolism is a function of conduit air content, we air-saturated stems of Abies lasiocarpa (Hook.) Nutt. (mean conduit diameter 13.7 +/- 0.7 microm) by pressurizing them 1 to 60 times above atmospheric pressure, prior to freezing and thawing. The air saturation method simulated the effect of increased tracheid size because the degree of super-saturation is proportional to a tracheid volume holding an equivalent amount of dissolved air at ambient pressure. Embolism increased when the dissolved air content was equivalent to a mean tracheid diameter of 30 microm at ambient air pressure. Our centrifuge and air-saturation data show that conifers are as vulnerable to freeze-thaw embolism as angiosperms with equal conduit diameter. We suggest that the hydraulic conductivity of conifer wood is maximized by increasing tracheid diameters in locations where freezing is rare. Conversely, the narrowing of tracheid diameters protects against freezing-induced embolism in cold climates.

Fine root dynamics and forest production across a calcium gradient in northern hardwood and conifer ecosystems

USGS Publications Warehouse

Park, B.B.; Yanai, R.D.; Fahey, T.J.; Bailey, S.W.; Siccama, T.G.; Shanley, J.B.; Cleavitt, N.L.

2008-01-01

Losses of soil base cations due to acid rain have been implicated in declines of red spruce and sugar maple in the northeastern USA. We studied fine root and aboveground biomass and production in five northern hardwood and three conifer stands differing in soil Ca status at Sleepers River, VT; Hubbard Brook, NH; and Cone Pond, NH. Neither aboveground biomass and production nor belowground biomass were related to soil Ca or Ca:Al ratios across this gradient. Hardwood stands had 37% higher aboveground biomass (P = 0.03) and 44% higher leaf litter production (P < 0.01) than the conifer stands, on average. Fine root biomass (<2 mm in diameter) in the upper 35 cm of the soil, including the forest floor, was very similar in hardwoods and conifers (5.92 and 5.93 Mg ha-1). The turnover coefficient (TC) of fine roots smaller than 1 mm ranged from 0.62 to 1.86 y-1 and increased significantly with soil exchangeable Ca (P = 0.03). As a result, calculated fine root production was clearly higher in sites with higher soil Ca (P = 0.02). Fine root production (biomass times turnover) ranged from 1.2 to 3.7 Mg ha-1 y-1 for hardwood stands and from 0.9 to 2.3 Mg ha-1 y -1 for conifer stands. The relationship we observed between soil Ca availability and root production suggests that cation depletion might lead to reduced carbon allocation to roots in these ecosystems. ?? 2008 Springer Science+Business Media, LLC.

Conifer seedling survival under closed-canopy and manzanita patches in the Sierra Nevada

Treesearch

A. Plamboeck; M. North; T. Dawson

2008-01-01

After a century of fire suppression, prescribed fire and mechanical thinning are widely used to restore mixed-conifer forests in California’s Sierra Nevada, yet after these treatments, trees sometimes fail to regenerate on many sites, for several possible reasons. Notably, competition between shrubs and tree seedlings for scarce water during prolonged summer dry...

Shrub removal in reforested post-fire areas increases native plant species richness

Treesearch

Gabrielle N. Bohlman; Malcolm North; Hugh D. Safford

2016-01-01

Large, high severity fires are becoming more prevalent in Sierra Nevada mixed-conifer forests, largely due to heavy fuel loading and forest densification caused by past and current management practices. In post-fire areas distant from seed trees, conifers are often planted to re-establish a forest and to prevent a potential type-conversion to shrub fields. Typical...

A preliminary investigation on the feasibility of preharvest burning for shrub control

Treesearch

J. Boone Kauffman; R. E. Martin

1985-01-01

Historically, fire was a natural component in ponderosa pine (Pinus ponderosa)-mixed conifer ecosystems in the Sierra Nevada of California. Wildfires may have reduced the number of shrub seeds in the soil, as well as the density of mature shrubs and young hardwoods, thereby allowing conifers to reinvade a site after disturbance, and grow with reduced competition. With...

Cacodylic acid for precommercial thinning in mixed-conifer stands shows erratic results.

Treesearch

William W. Oliver

1970-01-01

In a small-scale test, a silvicide consisting of cacodylic acid was injected during the growing season at dosages recommended by the manufacturer. The treatment did not thin adequately two of three mixed-conifer stands. Ponderosa pine and lower crown classes seemed more susceptible to the silvicide than Douglas-fir and upper crown classes. No flashback was recognized....

Historical forest structure, composition, and spatial pattern in dry conifer forests of the western Blue Mountains, Oregon

Treesearch

Derek J. Churchill; Gunnar C. Carnwath; Andrew J. Larson; Sean A. Jeronimo

2017-01-01

In frequent-fire forests of the interior Western United States, historical (prefire suppression) conditions are often used as a reference to set management objectives, guide prescriptions, and monitor treatment effectiveness. We quantified the historical size, density, composition, and spatial patterns of dry mixed-conifer forests in the Blue Mountains of Oregon to...

Biophysical controls on soil respiration in the dominant patch types of an old-growth, mixed-conifer forest

Treesearch

Siyan Ma; Jiquan Chen; John R. Butnor; Malcolm North; Eugénie S. Euskirchen; Brian Oakley

2005-01-01

Little is known about biophysical controls on soil respiration in California's Sierra Nevada old-growth, mixed-conifer forests. Using portable and automated soil respiration sampling units, we measured soil respiration rate (SRR) in three dominant patch types: closed canopy (CC), ceanothus-dominated patches (CECO), and open canopy (OC). SRR varied significantly...

Did the 2002 Hayman Fire, Colorado, USA, burn with uncharacteristic severity?

Treesearch

Paula J. Fornwalt; Laurie S. Huckaby; Steven K. Alton; Merrill R. Kaufmann; Peter M. Brown; Antony S. Cheng

2016-01-01

There is considerable interest in evaluating whether recent wildfires in dry conifer forests of western North America are burning with uncharacteristic severity - that is, with a severity outside the historical range of variability. In 2002, the Hayman Fire burned an unlogged 3400 ha dry conifer forest landscape in the Colorado Front Range, USA, that had been the...

A blend of ethanol and (−)-α-pinene were highly attractive to native siricid woodwasps (Siricidae, Siricinae) infesting conifers of the Sierra Nevada and the Allegheny Mountains

Treesearch

Nadir Erbilgin; Jack D. Stein; Robert E. Acciavatti; Nancy E. Gillette; Sylvia R. Mori; Kristi Bischel; Jonathan A. Cale; Carline R. Carvalho; David L. Wood

2017-01-01

Woodwasps in Sirex and related genera are well-represented in North American conifer forests, but the chemical ecology of native woodwasps is limited to a few studies demonstrating their attraction to volatile host tree compounds, primarily monoterpene hydrocarbons and monoterpene alcohols. Thus, we...

Factors affecting distribution of wood, detritus, and sediment in headwater streams draining managed young-growth red alder-conifer forests in southeast Alaska

Treesearch

Takashi Gomi; Adelaide C. Johnson; Robert L. Deal; Paul E. Hennon; Ewa H. Orlikowska; Mark S. Wipfli

2006-01-01

Factors (riparian stand condition, management regimes, and channel properties) affecting distributions of wood, detritus (leaves and branches), and sediment were examined in headwater streams draining young-growth red alder (Alnus rubra Bong.)-conifer riparian forests (40 years old) in southeast Alaska. More riparian red alder were found along...

A comprehensive guide to fuel management practices for dry mixed conifer forests in the northwestern United States

Treesearch

Theresa B. Jain; Mike A. Battaglia; Han-Sup Han; Russell T. Graham; Christopher R. Keyes; Jeremy S. Fried; Jonathan E. Sandquist

2012-01-01

This guide describes the benefits, opportunities, and trade-offs concerning fuel treatments in the dry mixed conifer forests of northern California and the Klamath Mountains, Pacific Northwest Interior, northern and central Rocky Mountains, and Utah. Multiple interacting disturbances and diverse physical settings have created a forest mosaic with historically low- to...

Patterns of mortality in an old-growth mixed-conifer forest of the Southern Sierra Nevada, California

Treesearch

Thomas F. Smith; David M. Rizzo; Malcolm North

2005-01-01

Mortality patterns in an old-growth, mixed-conifer forest, in the absence of wildfire, were investigated at the Teakettle Experimental Forest from 2000 to 2002. We tested the hypothesis that after a century of fire suppression, pathogen- and insect-associated mortality (between episodic droughts) would be significantly greater on ingrowth trees (i.e., smaller-diameter...

Sensitive species of snakes, frogs, and salamanders in southern California conifer forest areas: status and management

Treesearch

Glenn R. Stewart; Mark R. Jennings; Robert H. Jr. Goodman

2005-01-01

At least 35 species of amphibians and reptiles occur regularly in the conifer forest areas of southern California. Twelve of them have some or all of their populations identified as experiencing some degree of threat. Among the snakes, frogs, and salamanders that we believe need particular attention are the southern rubber boa (Charina bottae umbratica...

Photo series for quantifying forest residues in the: sierra mixed conifer type, sierra true fir type.

Treesearch

W.G. Maxwell; F.R. Ward

1979-01-01

Five series of photographs display different forest residue loading levels, by size classes, for areas of like timber type (Sierra mixed conifer and Sierra true fir) and cutting objective. Information with each photo includes measured weights, volumes and other residue data, information about the timber stand and harvest actions, and assessment of fire behavior and...

Towner State Nursery weed control program for field-grown conifer nursery stock

Treesearch

Roy LaFramboise

2002-01-01

The Towner State Nursery is owned and operated by the North Dakota Forest Service. The nursery is 160 acres in size and is located in north-central North Dakota. The Towner Nursery specializes in the production of conifer seedlings, transplants, and greenhouse-grown container stock for conservation tree plantings. Transplants constitute 80% of the stock produced. The...

Estimating past diameters of mixed conifer species in the central Sierra Nevada

Treesearch

K. Leroy Dolph

1981-01-01

Tree diameter outside bark at an earlier period of growth can be estimated from the linear relationship of present inside bark and outside bark diameters at breast height. This note presents equations for estimating inside bark diameters, outside bark diameters, and past outside bark diameters for each of the mixed-conifer species in the central Sierra Nevada.

Opportunities abound for affordable mechanical fuels treatment in dry mixed-conifer forests

Treesearch

Jeremy S. Fried; Theresa B. Jain

2013-01-01

The dry mixed-conifer forests that cover millions of acres in 12 western states experience low- to mixed-severity fire regimes; are typically heterogeneous in species composition, forest structure, and fuel dynamics; and grow quickly enough to generate concern about fuel treatment longevity. Yet compared to stands of pure ponderosa pine, there has been little research...

Soil respiration response to prescribed burning and thinning in mixed-conifer and hardwood forests

Treesearch

Amy Concilio; Siyan Ma; Qinglin Li; James LeMoine; Jiquan Chen; Malcolm North; Daryl Moorhead; Randy Jensen

2005-01-01

The effects of management on soil carbon efflux in different ecosystems are still largely unknown yet crucial to both our understanding and management of global carbon flux. To compare the effects of common forest management practices on soil carbon cycling, we measured soil respiration rate (SRR) in a mixed-conifer and hardwood forest that had undergone various...

Modeling snag dynamics in northern Arizona mixed-conifer and ponderosa pine forests

Treesearch

Joseph L. Ganey; Scott C. Vojta

2007-01-01

Snags (standing dead trees) are important components of forested habitats that contribute to ecological decay and recycling processes as well as providing habitat for many life forms. As such, snags are of special interest to land managers, but information on dynamics of snag populations is lacking. We modeled trends in snag populations in mixed-conifer and ponderosa...

A structurally based analytic model of growth and biomass dynamics in single species stands of conifers

Treesearch

Robin J. Tausch

2015-01-01

A theoretically based analytic model of plant growth in single species conifer communities based on the species fully occupying a site and fully using the site resources is introduced. Model derivations result in a single equation simultaneously describes changes over both, different site conditions (or resources available), and over time for each variable for each...

Environmental Assessment for Kirtland Air Force Base Arsenic Compliance System

DTIC Science & Technology

2003-09-01

Burrowing owl Athene cunicularia FSC hypugaea Mexican spotted Strix occidentalis FT,CH owl Iucida white-eared Hylocharis leucotis ST hummingbird...Kirtland AFB, their distribution range is nearby and appropriate habitat occurs on base. Mexican spotted owl The federally threatened Mexican ...conifers. In New Mexico, Mexican spotted owls occur in mixed conifer forests, ponderosa pine (Pinus ponderosa) forests, rocky canyons, and associated

Role of oaks in fisher habitat quality in the Sierra Nevada mountains at multiple spatial scales

Treesearch

Craig M. Thompson; Kathryn Purcell; Rebecca Green; Richard. Sweitzer

2015-01-01

Fishers (Pekania pennanti) occur in ponderosa pine, mixed conifer, and mixed hardwood conifer habitats in the southern Sierra Nevada at elevations from approximately 1400 to 2300 m. They are a candidate species for listing under both the Federal and California Endangered Species Acts. Since 2007, the U.S. Department of Agriculture, Forest Service (...

Changes in snag populations in northern Arizona mixed-conifer and ponderosa pine forests, 1997-2002

Treesearch

Joseph L. Ganey; Scott C. Vojta

2005-01-01

Snags (standing dead trees) are important components of forests that contribute to ecological processes and provide habitat for many life forms. We monitored dynamics of snag populations on 1-ha plots in southwestern mixed-conifer (n = 53 plots) and ponderosa pine (Pinus ponderosa, n = 60 plots) forests in north-central Arizona from 1997 to 2002. Of...

Plasticity in physiological traits in conifers: implications for response to climate change in the western U.S

Treesearch

NE Grulke

2010-01-01

Population variation in ecophysiological traits of four co-occurring montane conifers was measured on a large latitudinal gradient to quantitatively assess their potential for response to environmental change. White fir (Abies concolor) had the highest variability, gross photosynthetic rate (Pg), and foliar carbon (C) and nitrogen (N) content. Despite low water use...

Understanding patterns and regulatory pathways in conifer ontogeny: the role of the Penobscot Experimental Forest

Treesearch

Michael E. Day; Michael S. Greenwood; Katherine Spencer; Stephanie L. Adams

2014-01-01

Multi-cohort stands maintained by the U.S. Department of Agriculture, Forest Service on the Penobscot Experimental Forest (PEF) have played a central role in research into the mechanisms that regulate ontogenetic trends in forest conifers as they control effects due to population, climatic, and edaphic factors. These long-term silvicultural studies have permitted...

Decoupled mitochondrial and chloroplast DNA population structure reveals Holocene collapse and population isolation in a threatened Mexican-endemic conifer.

Treesearch

Juan P. Jaramillo-Correa; Jean Beaulieu; F. Thomas Ledig; Jean Bousqueter

2006-01-01

Chihuahua spruce (Picea chihuahuana Martínez) is a montane subtropical conifer endemic to the Sierra Madre Occidental in northwestern México. Range-wide variation was investigated using maternally inherited mitochondrial (mtDNA) and paternally inherited chloroplast (cpDNA) DNA markers. Among the 16 mtDNA regions analysed, only...

Behavior and ecology of exotic and native siricids and their hymenopteran parasitoids in southern pine stands

Treesearch

Kamal J.K. Gandhi; Christopher Asaro; Brittany F. Barnes; Jamie Dinkins; Wood Johnson; Victor C. Mastro; Jim R. Meeker; Daniel R. Miller; John R. Riggins; Kelley E. Zylstra

2011-01-01

The Eurasian woodwasp, Sirex noctilio Fabricius (Hymenoptera: Siricidae), is an introduced invasive pest in North America. This siricid woodwasp is native to Europe, Asia, and Africa where it is considered to a secondary colonizer of conifer trees. However, it is a primary colonizer of conifer trees in its non-native zone in the Southern Hemisphere...

Influence of elevation and site productivity on conifer distributions across Alaskan temperate rainforests

Treesearch

John P. Caouette; Ashley E. Steel; Paul E. Hennon; Pat G. Cunningham; Cathy A. Pohl; Barbara A. Schrader

2016-01-01

We investigated the influence of landscape factors on the distribution and life stage stability of coastal tree species near the northern limit of their ranges. Using data from 1465 forest inventory plots, we estimated probability of occurrence and basal area of six common conifer species across three broad latitudinal regions of coastal Alaska. By also comparing...

Low-frequency creep in CoNiFe films.

NASA Technical Reports Server (NTRS)

Bartran, D. S.; Bourne, H. C., Jr.; Chow, L. G.

1972-01-01

Domain wall motion excited by slow rise-time, bipolar, hard-axis pulses in vacuum deposited CoNiFe films from 1500 to 2000 A thick is studied. The results are consistent with those of comparable NiFe films. Furthermore, the wall coercivity is found to be the most significant sample property correlated to the low-frequency creep properties of all the samples.

Microsite controls on tree seedling establishment in conifer forest canopy gaps

Treesearch

Andrew N. Gray; Thomas A. Spies

1997-01-01

Tree seedling establishment and growth were studied in experimental canopy gaps to assess the effect of heterogeneity of regeneration microsites within and among gaps in mature conifer forests. Seedlings were studied for two years in closed-canopy areas and in recently created gaps ranging in size from 40 to 2000 m2 in four stands of mature (90-...

Regeneration in mixed conifer shelterwood cuttings in the Cascade Range of eastern Oregon.

Treesearch

K.W. Seidel

1979-01-01

A survey of shelterwood cuttings in mixed conifer forests in the eastern Oregon Cascade Range showed that, on the average, shelterwood units were well stocked with a mixture of advance, natural subsequent, and planted reproduction of a number of species. Because of slow invasion by understory vegetation, frequent heavy seed crops, and adequate density of the overstory...

Patterns of conifer regeneration following high severity wildfire in ponderosa pine - dominated forests of the Colorado Front Range

Treesearch

Marin E. Chambers; Paula J. Fornwalt; Sparkle L. Malone; Michael Battaglia

2016-01-01

Many recent wildfires in ponderosa pine (Pinus ponderosa Lawson & C. Lawson) - dominated forests of the western United States have burned more severely than historical ones, generating concern about forest resilience. This concern stems from uncertainty about the ability of ponderosa pine and other co-occurring conifers to regenerate in areas where no...

Red alder-conifer stands in Alaska: An example of mixed species management to enhance structural and biological complexity

Treesearch

Robert Deal; Ewa Orlikowska; David D’Amore; Paul Hennon

2017-01-01

There is worldwide interest in managing forests to improve biodiversity, enhance ecosystem services and assure long-term sustainability of forest resources. An increasingly important goal of forest management is to increase stand diversity and improve wildlife and aquatic habitat. Well-planned silvicultural systems containing a mixture of broadleaf-conifer species have...

Aboveground and belowground mammalian herbivores regulate the demography of deciduous woody species in conifer forests

Treesearch

Bryan A. Endress; Bridgett J. Naylor; Burak K. Pekin; Michael J. Wisdom

2016-01-01

Mammalian herbivory can have profound impacts on plant population and community dynamics. However, our understanding of specific herbivore effects remains limited, even in regions with high densities of domestic and wild herbivores, such as the semiarid conifer forests of western North America. We conducted a seven-year manipulative experiment to evaluate the effects...

In situ gene conservation of six conifers in western Washington and Oregon.

Treesearch

S.R. Lipow; K. Vance-Borland; J.B. St. Clair; J.A. Henderson; C. McCain

2007-01-01

A gap analysis was conducted to evaluate the extent to which genetic resources are conserved in situ in protected areas for six species of conifers in the Pacific Northwest. The gap analysis involved producing a geographic information system (GIS) detailing the location of protected areas and the distribution and abundance of tree species, as inferred from data on...

Influence of light and soil moisture on Sierran mixed-conifer understory communities.

Treesearch

Malcolm North; Brian Oakley; Rob Fiegener; Andrew Gray; Michael Barbour

2005-01-01

Sierra Nevada forests have high understory species richness yet we do not know which site factors influence herb and shrub distribution or abundance. We examined the understory of an old-growth mixed-conifer Sierran forest and its distribution in relation to microsite conditions. The forest has high species richness (98 species sampled), most of which are herbs with...

Broadband, red-edge information from satellites improves early stress detection in a New Mexico conifer woodland

Treesearch

Jan U.H. Eitel; Lee A. Vierling; Marcy E. Litvak; Dan S. Long; Urs Schulthess; Alan A. Ager; Dan J. Krofcheck; Leo Stoscheck

2011-01-01

Multiple plant stresses can affect the health, esthetic condition, and timber harvest value of conifer forests. To monitor spatial and temporal dynamic forest stress conditions, timely, accurate, and cost-effective information is needed that could be provided by remote sensing. Recently, satellite imagery has become available via the RapidEye satellite constellation to...

Predicting surface fuel models and fuel metrics using lidar and CIR imagery in a dense mixed conifer forest

Treesearch

Marek K. Jakubowksi; Qinghua Guo; Brandon Collins; Scott Stephens; Maggi Kelly

2013-01-01

We compared the ability of several classification and regression algorithms to predict forest stand structure metrics and standard surface fuel models. Our study area spans a dense, topographically complex Sierra Nevada mixed-conifer forest. We used clustering, regression trees, and support vector machine algorithms to analyze high density (average 9 pulses/m

Long-term effects of fire severity on oak–conifer dynamics in the southern Cascades

Treesearch

Matthew I. Cocking; J. Morgan Varner; Eric E. Knapp

2014-01-01

We studied vegetation composition and structure in a mixed conifer–oak ecosystem across a range of fire severity 10 years following wildfire. Sample plots centered on focal California black oaks (Quercus kelloggii) were established to evaluate oak and neighboring tree and shrub recovery across a gradient of fire severity in the southern Cascade...

Seedfall, regeneration, and seedling development in group-selection openings

Treesearch

Philip M. McDonald; Celeste S. Abbott

1994-01-01

Forty-eight openings of 30, 60, and 90 feet in diameter were created in previously unmanaged mixed conifer-hardwood stands on a high-quality site in northern California in 1963. They were an attempt to convert an essentially even-aged forest to an uneven-aged arrangement and comprised the initial cut in the group-selection system. Five conifers and three hardwoods...

Canopy arthropod responses to thinning and burning treatments in old-growth mixed-conifer forest in the Sierra Nevada, California

Treesearch

Thomas Rambo; Timothy Schowalter; Malcolm North

2014-01-01

We compared canopy arthropod responses to common fuels reduction treatments at Teakettle Experimental Forest in the south-central Sierra Nevada of California. We sampled arthropod communities among four dominant overstory conifer species and three dominant understory angiosperm species before and after overstory or understory thinning or no thinning treatments followed...

Characteristics of snags containing excavated cavities in northern Arizona mixed-conifer and ponderosa pine forests

Treesearch

Joseph L. Ganey; Scott C. Vojta

2004-01-01

Snags provide an important resource for a rich assemblage of cavity-nesting birds in the southwestern United States. To expand our knowledge of snag use by cavity-nesting birds in this region, we documented characteristics of snags with and without excavated cavities in mixed-conifer and ponderosa pine (Pinus ponderosa Dougl. ex Laws) forest in north...

Silvics of North America: Volume 1. Conifers

Treesearch

Russell M Burns; Barbara H. Honkala; [Technical coordinators

1990-01-01

The silvical characteristics of about 200 forest tree species and varieties are described. Most are native to the 50 United States and Puerto Rico, but a few are introduced and naturalized. Information on habitat, life history, and genetics is given for 15 genera, 63 species, and 20 varieties of conifers and for 58 genera, 128 species, and 6 varieties of hardwoods....

Ectomycorrhizal sporophore distributions in a southeastern Appalachian mixed hardwood/conifer forest with thickets of Rhododendron maximum

Treesearch

John F. Walker; Orson R. Jr. Miller

2002-01-01

Sporophore abundance of putatively ectomycorrhizal fungi was compared in a mature mixed hardwood/conifer forest inside of (1) versus outside of (2) Rhododendron maximum thickets (RmT). Experimental blocks (1/4 ha) were established inside of (3) and outside of (3) RmT at the Coweeta Hydrologic Laboratory in Macon County, North Carolina, USA. Litter...

Effective tree hazard control on forested recreation sites...losses and protection costs evaluated

Treesearch

Lee A. Paine

1967-01-01

Effectiveness of hazard control was evaluated by analyzing data on tree failures, accidents, and control costs on California recreation sites. Results indicate that reduction of limb hazard in oaks and bole hazard in conifers is the most effective form of control. Least effective is limb hazard reduction in conifers. After hazard control goals or control budgets have...

A comparison of conifers planted on the Hemlock Experimental Forest.

Treesearch

Norman P. Worthington

1955-01-01

Test plantings have been made on the Hemlock Experimental Forest in cooperation with the St. Regis Paper Company to test suitability of several native conifers for planting on heavy bracken and brush-covered Site II areas typical of the western Olympic Peninsula. In the spring of 1950, 2,500 Douglas-fir seedlings from the Forest Industries Tree Nursery at Nisqually...

Mixed-conifer forests of central Oregon: Effects of logging and fire exclusion vary with environment

Treesearch

Andrew G. Merschel; Thomas A. Spies; Emily K. Heyerdahl

2014-01-01

Twentieth-century land management has altered the structure and composition of mixed-conifer forests and decreased their resilience to fire, drought, and insects in many parts of the Interior West. These forests occur across a wide range of environmental settings and historical disturbance regimes, so their response to land management is likely to vary across...

A Mixed-Effects Heterogeneous Negative Binomial Model for Postfire Conifer Regeneration in Northeastern California, USA

Treesearch

Justin S. Crotteau; Martin W. Ritchie; J. Morgan Varner

2014-01-01

Many western USA fire regimes are typified by mixed-severity fire, which compounds the variability inherent to natural regeneration densities in associated forests. Tree regeneration data are often discrete and nonnegative; accordingly, we fit a series of Poisson and negative binomial variation models to conifer seedling counts across four distinct burn severities and...

Black bear damage to northwestern conifers in California: a review

Treesearch

Kenneth O. Fulgham; Dennis Hosack

2017-01-01

A total of 789 black bear damaged trees were investigate over a multi-year period on 14 different study sites chosen on lands of four participating timber companies. The sites ranged from 30 to 50 years of age. Four different conifer species were found to have black bear damage: coastal redwood (Sequoia sempervirens (D. Don) Endl.), Douglas-fir (...

Density of large snags and logs in northern Arizona mixed-conifer and ponderosa pine forests

Treesearch

Joseph L. Ganey; Benjamin J. Bird; L. Scott Baggett; Jeffrey S. Jenness

2015-01-01

Large snags and logs provide important biological legacies and resources for native wildlife, yet data on populations of large snags and logs and factors influencing those populations are sparse. We monitored populations of large snags and logs in mixed-conifer and ponderosa pine (Pinus ponderosa) forests in northern Arizona from 1997 through 2012. We modeled density...

Nitrogen mineralization in aspen/conifer soils after a natural fire

Treesearch

Michael C. Amacher; Dale L. Bartos; Tracy Christopherson; Amber D. Johnson; Debra E. Kutterer

2001-01-01

We measured the effects of the 1996 Pole Creek fire, Fishlake National Forest, Utah, on available soil N and net N mineralization for three summers after the fire using an ion exchange membrane (IEM) soil core incubation method. Fire in mixed aspen/conifer increased the amount of available NH4, and a subsequent net increase in soil nitrification was observed. Release...

Variability in vegetation and surface fuels across mixed-conifer-dominated landscapes with over 40 years of natural fire

Treesearch

Brandon M. Collins; Jamie M. Lydersen; Danny L. Fry; Katherine Wilkin; Tadashi Moody; Scott L. Stephens

2016-01-01

Studies of historical fire and vegetation conditions in dry conifer forests have demonstrated a high degree of heterogeneity across landscapes. However, there is a limit to the amount of inference that can be drawn from historical fire reconstructions. Contemporary "reference" landscapes may be able to provide information that is not available from historical...

Coarse woody debris assay in northern Arizona mixed-conifer and ponderosa pine forests

Treesearch

Joseph L. Ganey; Scott C. Vojta

2010-01-01

Coarse woody debris (CWD) provides important ecosystem services in forests and affects fire behavior, yet information on amounts and types of CWD typically is limited. To provide such information, we sampled logs and stumps in mixed-conifer and ponderosa pine (Pinus ponderosa) forests in north-central Arizona. Spatial variability was prominent for all CWD parameters....

Diseases of Pacific Coast conifers. Agriculture handbook

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scharpf, R.F.

1993-06-01

The handbook provides basic information needed to identify the common diseases of Pacific Coast conifers. Hosts, distribution, disease cycles, and identifying characteristics are described for more than 150 diseases, including cankers, diebacks, galls, rusts, needle diseases, root diseases, mistletoes, and rots. Diseases in which abiotic factors are involved are also described. For some groups of diseases, a descriptive key to field identification is included.

Widespread inbreeding and unexpected geographic patterns of genetic variation in eastern hemlock (Tsuga canadensis), an imperiled North American conifer

Treesearch

Kevin M. Potter; Robert M. Jetton; William S. Dvorak; Valerie D. Hipkins; Rusty Rhea; W. Andrew Whittier

2012-01-01

Eastern hemlock (Tsuga canadensis [L.] Carr.) is an ecologically important tree species experiencing severe mortality across much of its eastern North American distribution, caused by infestation of the exotic hemlock woolly adelgid (Adelges tsugae Annand). To guide gene conservation strategies for this imperiled conifer, we conducted a range-wide genetic variation...

Post-fire management regimes affect carbon sequestration and storage in a Sierra Nevada mixed conifer forest

Treesearch

Elizabeth M. Powers; John D. Marshall; Jianwei Zhang; Liang Wei

2013-01-01

Forests mitigate climate change by sequestering CO2 from the atmosphere and accumulating it in biomass storage pools. However, in dry conifer forests, fire occasionally returns large quantities of CO2 to the atmosphere. Both the total amount of carbon stored and its susceptibility to loss may be altered by post-fire land...

Soil nitrogen mineralization in a clearcutting chronosequence in a northern California conifer forest

Treesearch

D. W. Frazier; J. G. McColl; R. F. Powers

1990-01-01

Soil ammonification, nitrification, and N mobility were studied for 1 yr in three Sierra Nevada (USA) mixed-conifer stands to examine the long-term influence of timber harvesting on soil N dynamics. Clearcutting had a persistent effect on soil N mineralization, detectable by in situ incubation but not by conventional low-tension lysimetry. Mineralization rates were...

Trends in snag populations in Northern Arizona mixed-conifer and ponderosa pine forests, 1997-2012

Treesearch

J. L. Ganey; S. C. Vojta

2014-01-01

We monitored snag populations in drought-stressed mixed-conifer and ponderosa pine (Pinus ponderosa) forests, northern Arizona, at 5-yr intervals from 1997-2012. Snag density increased from 1997-2007 in both forest types, with accelerated change due to drought-related tree mortality during the period 2002-2007. Snag density declined non-significantly from 2007-2012,...

Predicting nitrogen flux along a vertical canopy gradient in a mixed conifer forest stand of the San Bernardino Mountains in California

Treesearch

Michael J. Arbaugh; Andrzej Bytnerowicz; Mark E. Fenn

1998-01-01

A 3-year study of nitrogenous (N) air pollution deposition to ponderosa pine (Pinus ponderosa Dougl. ex. Laws.) seedlings along a mature tree vertical canopy gradient was conducted in the mixed conifer forest of the San Bernardino Mountains of southern California. Concentrations of nitric acid vapor (HNO3), particulate nitrate...

Shelterwood cutting in a young-growth, mixed-conifer stand in north central California

Treesearch

Philip M. McDonald

1976-01-01

A two-stage shelterwood cutting, at 12 trees per acre, with site preparation, enhanced seedfall, regeneration, and residual growth at the Challenge Experimental Forest, north central California. Shelterwood trees produced 9.2 times more seed than trees in the control. Ponderosa pine regeneration numbered about 3700 seedlings per acre (9139 per ha) and tolerant conifers...

Reality check: Shedding new light on the restoration needs of mixed-conifer forests

Treesearch

Marie Oliver; Thomas Spies; Andrew. Merschel

2014-01-01

Until recently, scientific understanding of the history and ecology of the Pacific Northwest's mixed-conifer forests east of the Cascade Range was minimal. As a result, forest managers have had limited ability to restore the health of publicly owned forests that show signs of acute stress caused by insects, disease, grazing, logging, and wildfire. A...

Physical characteristics of shrub and conifer fuels for fire behavior models

Treesearch

Jonathan R. Gallacher; Thomas H. Fletcher; Victoria Lansinger; Sydney Hansen; Taylor Ellsworth; David R. Weise

2017-01-01

The physical properties and dimensions of foliage are necessary inputs for some fire spread models. Currently, almost no data exist on these plant characteristics to fill this need. In this report, we measured the physical properties and dimensions of the foliage from 10 live shrub and conifer fuels throughout a 1-year period. We developed models to predict relative...

Relations between red alder composition and understory vegetation in young mixed forests of southeast Alaska.

Treesearch

Thomas A. Hanley; Robert L. Deal; Ewa H. Orlikowska

2006-01-01

Interest in mixed red alder (Alnus rubra Bong.)—conifer young-growth stands has grown in southeast Alaska, USA, because they appear to provide much more productive understory vegetation and wildlife habitat than do similar-aged pure conifer stands. We studied understory vegetation in nine even-aged young-growth stands (38-42 years old)...

Comparative trends in log populations in northern Arizona mixed-conifer and ponderosa pine forests following severe drought

Treesearch

Joseph L. Ganey; Scott C. Vojta

2017-01-01

Logs provide an important form of coarse woody debris in forest systems, contributing to numerous ecological processes and affecting wildlife habitat and fuel complexes. Despite this, little information is available on the dynamics of log populations in southwestern ponderosa pine (Pinus ponderosa) and especially mixed-conifer forests. A recent episode of elevated tree...

Postfire seed rain of black spruce, a semiserotinous conifer, in forests of interior Alaska

Treesearch

Jill Johnstone; Leslie Boby; Emily Tissier; Michelle Mack; Dave Verbyla; Xanthe. Walker

2009-01-01

The availability of viable seed can act as an important constraint on plant regeneration following disturbance. This study presents data on seed quantity and quality for black spruce (Picea mariana (Mill.) B.S.P.), a semiserotinous conifer that dominates large areas of North American boreal forest. We sampled seed rain and viability for 2 years...

Predicting post-fire tree mortality for 12 western US conifers using the First-Order Fire Effects Model (FOFEM)

Treesearch

Sharon Hood; Duncan Lutes

2017-01-01

Accurate prediction of fire-caused tree mortality is critical for making sound land management decisions such as developing burning prescriptions and post-fire management guidelines. To improve efforts to predict post-fire tree mortality, we developed 3-year post-fire mortality models for 12 Western conifer species - white fir (Abies concolor [Gord. &...

A fuel treatment reduces fire severity and increases suppression efficiency in a mixed conifer forest

Treesearch

Jason J. Moghaddas; Larry Craggs

2007-01-01

Fuel treatments are being implemented on public and private lands across the western United States. Although scientists and managers have an understanding of how fuel treatments can modify potential fire behaviour under modelled conditions, there is limited information on how treatments perform under real wildfire conditions in Sierran mixed conifer forests. The Bell...

Pretreatment tree dominance and conifer removal treatments affect plant succession in sagebrush communities

Treesearch

Rachel E. Williams; Bruce A. Roundy; April Hulet; Richard F. Miller; Robin J. Tausch; Jeanne C. Chambers; Jeffrey Matthews; Robert Schooley; Dennis Eggett

2017-01-01

In sagebrush (Artemisia tridentata Nutt.) ecosystems, expansion and infilling of conifers decreases the abundance of understory perennial vegetation and lowers ecosystem resilience and resistance of the once shrub grass−dominated state. We prescribed burned or cut juniper (Juniperus spp. L.) and pinyon (Pinus spp. L.) trees at 10 sites across the western United States...

Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation

PubMed Central

Wegrzyn, Jill L.; Liechty, John D.; Stevens, Kristian A.; Wu, Le-Shin; Loopstra, Carol A.; Vasquez-Gross, Hans A.; Dougherty, William M.; Lin, Brian Y.; Zieve, Jacob J.; Martínez-García, Pedro J.; Holt, Carson; Yandell, Mark; Zimin, Aleksey V.; Yorke, James A.; Crepeau, Marc W.; Puiu, Daniela; Salzberg, Steven L.; de Jong, Pieter J.; Mockaitis, Keithanne; Main, Doreen; Langley, Charles H.; Neale, David B.

2014-01-01

The largest genus in the conifer family Pinaceae is Pinus, with over 100 species. The size and complexity of their genomes (∼20–40 Gb, 2n = 24) have delayed the arrival of a well-annotated reference sequence. In this study, we present the annotation of the first whole-genome shotgun assembly of loblolly pine (Pinus taeda L.), which comprises 20.1 Gb of sequence. The MAKER-P annotation pipeline combined evidence-based alignments and ab initio predictions to generate 50,172 gene models, of which 15,653 are classified as high confidence. Clustering these gene models with 13 other plant species resulted in 20,646 gene families, of which 1554 are predicted to be unique to conifers. Among the conifer gene families, 159 are composed exclusively of loblolly pine members. The gene models for loblolly pine have the highest median and mean intron lengths of 24 fully sequenced plant genomes. Conifer genomes are full of repetitive DNA, with the most significant contributions from long-terminal-repeat retrotransposons. In depth analysis of the tandem and interspersed repetitive content yielded a combined estimate of 82%. PMID:24653211

Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana)

PubMed Central

Gonzalez-Ibeas, Daniel; Martinez-Garcia, Pedro J.; Famula, Randi A.; Delfino-Mix, Annette; Stevens, Kristian A.; Loopstra, Carol A.; Langley, Charles H.; Neale, David B.; Wegrzyn, Jill L.

2016-01-01

Sugar pine (Pinus lambertiana Douglas) is within the subgenus Strobus with an estimated genome size of 31 Gbp. Transcriptomic resources are of particular interest in conifers due to the challenges presented in their megagenomes for gene identification. In this study, we present the first comprehensive survey of the P. lambertiana transcriptome through deep sequencing of a variety of tissue types to generate more than 2.5 billion short reads. Third generation, long reads generated through PacBio Iso-Seq have been included for the first time in conifers to combat the challenges associated with de novo transcriptome assembly. A technology comparison is provided here to contribute to the otherwise scarce comparisons of second and third generation transcriptome sequencing approaches in plant species. In addition, the transcriptome reference was essential for gene model identification and quality assessment in the parallel project responsible for sequencing and assembly of the entire genome. In this study, the transcriptomic data were also used to address questions surrounding lineage-specific Dicer-like proteins in conifers. These proteins play a role in the control of transposable element proliferation and the related genome expansion in conifers. PMID:27799338

Response of Subalpine Conifers in the Sierra Nevada, California, U.S.A., to 20th-Century Warming and Decadal Climate Variability

Treesearch

Constance I. Millar; Robert D. Westfall; Diane L. Delany; John C. King; Lisa J. Graumlich

2004-01-01

Four independent studies of conifer growth between 1880 and 2002 in upper elevation forests of the central Sierra Nevada, California, U.S.A., showed correlated multidecadal and century-long responses associated with climate. Using tree-ring and ecological plot analysis, we studied annual branch growth of krummholz Pinus albicaulis; invasion by P....

Overstory vegetation influence nitrogen and dissolved organic carbon flux from the atmosphere to the forest floor: Boreal Plain, Canada

Treesearch

David E. Pelster; Randall K. Kolka; Ellie E. Prepas

2009-01-01

Nitrate, ammonium, total dissolved nitrogen (TDN), dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) concentrations and flux were measured for one year in bulk deposition and throughfall from three stand types (upland deciduous, upland conifer and wetland conifer) on the Boreal Plain, Canada. Annual (November 2006 to October 2007 water year) flux...

Automated estimation of individual conifer tree height and crown diameter via Two-dimensional spatial wavelet analysis of lidar data

Treesearch

Michael J. Falkowski; Alistair M.S. Smith; Andrew T. Hudak; Paul E. Gessler; Lee A. Vierling; Nicholas L. Crookston

2006-01-01

We describe and evaluate a new analysis technique, spatial wavelet analysis (SWA), to automatically estimate the location, height, and crown diameter of individual trees within mixed conifer open canopy stands from light detection and ranging (lidar) data. Two-dimensional Mexican hat wavelets, over a range of likely tree crown diameters, were convolved with lidar...

Forest restoration and fuels reduction in ponderosa pine and dry mixed conifer in the Southwest

Treesearch

Marlin Johnson

2008-01-01

(Please note, this is an abstract only) Most people agree that ponderosa pine and dry mixed conifer stands need to be thinned and burned to move the stands to within a normal range of variability. Unfortunately, people are in disagreement beyond that point. To some, restoration and fuels reduction means restoring stands to more open, pre-European (pre-1880) conditions...

Short-term effects of experimental burning and thinning on soil respiration in an old-growth, mixed-conifer forest

Treesearch

Siyan Ma; Jiquan Chen; Malcolm North; Heather E. Erickson; Mary Bresee; James Le Moine

2004-01-01

To understand the roles of forest management practices in meeting the goals of forest sustainability and CO2 sequestration, we evaluated the effects of burning and thinning treatments on soil respiration and soil environments in an old-growth, mixed-conifer forest in California’s southern Sierra Nevada. Six experimental treatments with two levels...

Anisohydric water use behavior links growing season evaporative demand to ring-width increment in conifers from summer-dry environments

Treesearch

Steve L. Voelker; R. Justin DeRose; Matthew F. Bekker; Chalita Sriladda; Nisa Leksungnoen; Roger K. Kjelgren

2018-01-01

Conifers in the Pinaceae and Cupressaceae from dry environments have been shown to broadly differ in their stomatal sensitivity to soil drying that result in isohydric versus anisohydric water use behavior, respectively. Here, we first employ a series of drought experiments and field observations to confirm the degree of isohydric versus anisohydric water use behavior...

Postfire survival and flushing in three Sierra Nevada conifers with high initial crown scorch

Treesearch

C. Hanson; M. North

2009-01-01

With growing debate over the impacts of post-fire salvage logging in conifer forests of the western USA, managers need accurate assessments of tree survival when significant proportions of the crown have been scorched. The accuracy of fire severity measurements will be affected if trees that initially appear to be fire-killed prove to be viable after longer observation...

Accuracy of a high-resolution lidar terrain model under a conifer forest canopy

Treesearch

S.E. Reutebuch; R.J. McGaughey; H.-E. Andersen; W.W. Carson

2003-01-01

Airborne laser scanning systems can provide terrain elevation data for open areas with a vertical accuracy of 15 cm. In this study, a high-resolution digital terrain model (DTM) was produced from high-density lidar data. Vegetation in the 500-ha mountainous study area varied from bare ground to dense 70-year-old conifer forest. Conventional ground survey methods were...

Population isolation results in unexpectedly high differentiation in Carolina hemlock (Tsuga caroliniana), an imperiled southern Appalachian endemic conifer

Treesearch

Kevin M. Potter; Angelia Rose Campbell; Sedley A. Josserand; C. Dana Nelson; Robert M. Jetton

2017-01-01

Carolina hemlock (Tsuga caroliniana Engelm.) is a rare conifer species that exists in small, isolated populations within a limited area of the Southern Appalachian Mountains of the USA. As such, it represents an opportunity to assess whether population size and isolation can affect the genetic diversity and differentiation of a species capable of longdistance gene flow...

Resin duct characteristics in the wood of fire-scarred North American conifers

Treesearch

Estelle Arbellay; Markus Stoffel; Elaine K. Sutherland; Kevin T. Smith; Donald A. Falk

2013-01-01

Traumatic resin ducts form in xylem and phloem tissue of conifers in response to abiotic wounding, fungal invasion, and insect attack. Little is known about resin duct characteristics in the wood of fire-scarred trees. The aim of this study is to quantify changes in traits of both axial and radial resin ducts, along with those of associated epithelial cells and...

Canopy structure and tree condition of young, mature, and old-growth Douglas-fir/hardwood forests

Treesearch

B.B. Bingham; J.O. Sawyer

1992-01-01

Sixty-two Douglas-fir/hardwood stands ranging from 40 to 560 years old were used to characterize the density; diameter, and height class distributions of canopy hardwoods and conifers in young (40 -100 yr), mature (101 - 200 yr) and old-growth (>200 yr) forests. The crown, bole, disease, disturbance, and cavity conditions of canopy conifers and hardwoods were...

Seasonal variation in surface fuel moisture between unthinned and thinned mixed conifer forest, northern California, USA

Treesearch

Becky L. Estes; Eric E. Knapp; Carl N. Skinner; Fabian C. C. Uzoh

2012-01-01

Reducing stand density is often used as a tool for mitigating the risk of high-intensity crown fires. However, concern has been expressed that opening stands might lead to greater drying of surface fuels, contributing to increased fire risk. The objective of this study was to determine whether woody fuel moisture differed between unthinned and thinned mixed-conifer...

Mapped DNA probes from Ioblolly pine can be used for restriction fragment length polymorphism mapping in other conifers

Treesearch

M.R. Ahuja; M.E. Devey; A.T. Groover; K.D. Jermstad; D.B Neale

1994-01-01

A high-density genetic map based on restriction fragment length polymorphisms (RFLPs) is being constructed for loblolly pine (Pinus taeda L.). Consequently, a large number of DNA probes from loblolly pine are potentially available for use in other species. We have used some of these DNA probes to detect RFLPs in 12 conifers and an angiosperm....

Species-specific response to climate reconstruction in upper-elevation mixed-conifer forests of the western Sierra Nevada, California

Treesearch

M. Hurteau; H. Zald; M. North

2007-01-01

Dendrochronology climate reconstruction studies often sample dominant, open-grown trees to reduce competition effects and isolate annual climate influences on radial increment growth. However, there has been no examination of how species respond as stand densities increase or which species in mixed-conifer forests provide a better record of past climate. We sampled 579...

Structure, specificity, and evolution of insect guilds related to cones of conifers in Western Europe

Treesearch

Alain Roques

1991-01-01

Patchy and ephemeral resources, such as the cones of conifers, can be very useful in the study of plant-insect relationships. Studies of such relationships in forest entomology are typically complicated by the spatial and temporal characteristics of the host plants, which occur over vast areas and have lifespans of decades or even centuries. The reproductive structures...

Animal damage to conifers on national forests in the Pacific Northwest region.

Treesearch

Glenn L. Crouch

1969-01-01

Animal damage to conifers is a timely topic in the Pacific Northwest. Foresters in this Region are increasingly concerned and perplexed by damage caused by animals to natural and planted seedlings and larger growing stock. Nearly every animal inhabiting for st land is believed to injure seedlings and small trees to some degree. Mice girdle small trees, and bears girdle...

Drought effects on conifers in the Pacific Northwest, 1958-59.

Treesearch

T.W. Childs

1960-01-01

The summer of 1958 was unusuaIly hot in most of Oregon and Washington, and that of 1959 was unusually dry except in western Washington. Killing of young conifers, similar to that in northern Idaho, was common in a few localities in northwestern Washington by the end of the 1958 growing season, but did not continue in 1959 and was not seen elsewhere. Various other...

Macro-scale assessment of demographic and environmental variation within genetically derived evolutionary lineages of eastern hemlock (Tsuga canadensis), an imperiled conifer of the eastern United States

Treesearch

Anantha M. Prasad; Kevin M. Potter

2017-01-01

Eastern hemlock (Tsuga canadensis) occupies a large swath of eastern North America and has historically undergone range expansion and contraction resulting in several genetically separate lineages. This conifer is currently experiencing mortality across most of its range following infestation of a non-native insect. With the goal of better...

Evaluation of sampling methods to quantify abundance of hardwoods and snags within conifer-dominated riparian zones

Treesearch

Theresa Marquardt; Hailemariam Temesgen; Paul D. Anderson; Bianca Eskelson

2012-01-01

Six sampling alternatives were examined for their ability to quantify selected attributes of snags and hardwoods in conifer-dominated riparian areas of managed headwater forests in western Oregon. Each alternative was simulated 500 times at eight headwater forest locations based on a 0.52-ha square stem map. The alternatives were evaluated based on how well they...

Lack of viable seeds in the forest floor after clearcutting

Treesearch

Robert M. Frank; Lawrence O. Safford

1970-01-01

The viability of seeds o[ northern conifers apparently does not persist in the forest floor for more than one year. A set of forest-floor samples collected two years alter a heavy seed crop and one year alter a seedcrop failure did not produce any conifer germinants, regardless of whether or not the surfaces of the samples were disturbed. A second set of forest-floor...

Science You Can Use Bulletin: Revisiting disturbance: A new guide for keeping dry mixed conifer forests healthy through fuel management

Treesearch

Sue Miller; Theresa Jain; Mike A. Battaglia; Han-Sup Han; Russell T. Graham; Christopher R. Keyes; Jeremy S. Fried; Jonathan E. Sandquist

2014-01-01

Planning for hazardous fuels reduction can be challenging, given that land managers must balance multiple resource objectives. To help managers with planning and implementing fuel treatments, the Rocky Mountain Research Station, with support from the Joint Fire Science Program, has published A Comprehensive Guide to Fuel Management Practices for Dry Mixed Conifer...

Modeling climate and fuel reduction impacts on mixed-conifer forest carbon stocks in the Sierra Nevada, California

Treesearch

Matthew D. Hurteau; Timothy A. Robards; Donald Stevens; David Saah; Malcolm North; George W. Koch

2014-01-01

Quantifying the impacts of changing climatic conditions on forest growth is integral to estimating future forest carbon balance. We used a growth-and-yield model, modified for climate sensitivity, to quantify the effects of altered climate on mixed-conifer forest growth in the Lake Tahoe Basin, California. Estimates of forest growth and live tree carbon stocks were...

Feeding ecology of sharp-shinned hawks in deciduous and coniferous forests in Colorado

Treesearch

Suzanne M. Joy; Richard T. Reynolds; Richard L. Knight; Richard W. Hoffman

1994-01-01

Feeding ecology of 11 Sharp-skinned Hawk (Accipiter striates) pairs nesting in aspen (Populus tremuloides), conifer (Abies, Picea spp.), and mixed aspen-conifer habitats in southwest Colorado was investigated during 1988-1989. Small birds (x-bar = 20.9 g, SE = 0.8 g) and mammals (x-bar = 41.1 g, SE = 3.3 g) comprised 91 and 9% of...

A comprehensive guide to fuel management practices for dry mixed conifer forests in the northwestern United States: Prescribed fire

Treesearch

Theresa B. Jain; Mike A. Battaglia; Han-Sup Han; Russell T. Graham; Christopher R. Keyes; Jeremy S. Fried; Jonathan E. Sandquist

2014-01-01

Fire has had a profound historical role in shaping dry mixed conifer forests in the western United States. However, the uncertainty and complexity of prescribed fires raises the question “Is fire always the best option for treating fuels?” The decision to use prescribed fire is dependent upon several factors.

Aerial spraying of low-grade hardwood stands with 2,4,5-T in West Virginia

Treesearch

George W. Wendel

1966-01-01

Aerial application of herbicides to poor hardwood stands shows promise of being an effective aid in converting stands of low-grade hardwoods to conifers in West Virginia. Many of the sites now occupied by low-grade hardwoods are incapable of producing quality hardwoods - even under good management - and are generally much better suited to certain conifers, particularly...

Estimation and application of a growth and yield model for uneven-aged mixed conifer stands in California.

Treesearch

Jingjing Liang; J. Buongiorno; R.A. Monserud

2005-01-01

A growth model for uneven-aged mixed-conifer stands in California was developed with data from 205 permanent plots. The model predicts the number of softwood and hardwood trees in nineteen diameter classes, based on equations for diameter growth rates, mortality arid recruitment. The model gave unbiased predictions of the expected number of trees by diameter class and...

Canopy damage to conifer plantations within a large mixed-severity wildfire varies with stand age

Treesearch

Jonathan R. Thompson; Thomas A. Spies; Keith A. Olsen

2011-01-01

The 2002 Biscuit Fire burned at mixed-severities encompassing over 200,000 ha of publicly owned forestland, including more than 8300 ha of conifer plantations. We used pre- and post-fire digital aerial photography to examine how the level of canopy damage varied within these plantations in relation to topography, weather, vegetation-cover, and management history, with...

Fuel and fire behavior in high-elevation five-needle pines affected by mountain pine beetle

Treesearch

Michael J. Jenkins

2011-01-01

Bark beetle-caused tree mortality in conifer forests affects the quantity and quality of forest fuels and has long been assumed to increase fire hazard and potential fire behavior. In reality, bark beetles and their effects on fuel accumulation and subsequent fire hazard have only recently been described. We have extensively sampled fuels in three conifer forest types...

Truffle abundance in riparian and upland mixed-conifer forest of California's southern Sierra Nevada

Treesearch

Marc D. Meyer; Malcolm P. North

2005-01-01

We compared the abundance, diversity, and composition of truffles in riparian and upland areas within a mixed-conifer forest of the Sierra Nevada of California. We sampled for truffles in a single watershed over two seasons (spring and summer) and 4 years to determine whether truffles were more abundant and diverse in riparian than upland sites in old-growth, mixed-...

A fuel treatment reduces potential fire severity and increases suppression efficiency in a Sierran mixed conifer forest

Treesearch

Jason J. Moghaddas

2006-01-01

Fuel treatments are being widely implemented on public and private lands across the western U.S. While scientists and managers have an understanding of how fuel treatments can modify potential fire behavior under modeled conditions, there is limited information on how treatments perform under real wildfire conditions in Sierran mixed conifer forests. The Bell Fire...

Some conifer clades contribute substantial amounts of leaf waxes to sedimentary archives

NASA Astrophysics Data System (ADS)

Diefendorf, A. F.; Wing, S. L.; Leslie, A. B.; Freeman, K. H.

2014-12-01

Leaf waxes (i.e. n-alkanes, n-alkanoic acids) and their carbon isotopes (δ13C) are commonly used to track past changes in the carbon cycle or plant ecophysiology. Previous studies indicated that conifer n-alkane concentrations are lower than in angiosperms and that 13C fractionation during n-alkane synthesis (ɛlipid) is smaller than in angiosperms. These prior studies, however, sampled a limited phylogenetic and geographic subset of conifers, leaving out many important subtropical and Southern Hemisphere groups that were once widespread and common components of fossil assemblages. To expand on previous work, we collected 44 conifer species from the University of California Botanical Garden at Berkeley, capturing all extant conifer families and most extant genera. By collecting all specimens at a common site we attempted to minimize the confounding effects of climate, allowing phylogenetic patterns in the δ13C of leaf waxes to be expressed more strongly. We find that Pinaceae, including many North American species used in previous studies, have very low or no n-alkanes. However, other conifer groups have significant concentrations of n-alkanes, especially the Araucariaceae (Norfolk Island pines), Podocarpaceae (common in the Southern Hemisphere), and many species of Cupressaceae (junipers and relatives). Within the Cupressaceae, we find total n-alkane concentrations are high in subfamilies Cupressoideae and Callitroideae, but significantly lower in the early diverging taxodioid lineages (including bald cypress and redwood). Individual n-alkane chain lengths have a weak phylogenetic signal, except for n-C29 alkane, but when combined using average chain length (ACL), a strong phylogenetic signal emerges. The strong phylogenetic signal in ACL reinforces that it is strongly influenced by factors other than climate. An analysis of ɛlipid indicates a strong phylogenetic signal in which the smallest biosynthetic fractionation occurs in Pinaceae and the largest in Taxaceae (yews and relatives). We are currently exploring potential mechanisms to explain the ɛlipid patterns. These results have important implications for interpreting n-alkane δ13C values in sedimentary archives, especially outside of North America.

Dry forest resilience varies under simulated climate‐management scenarios in a central Oregon, USA landscape.

PubMed

Halofsky, Joshua S; Halofsky, Jessica E; Burcsu, Theresa; Hemstrom, Miles A

Determining appropriate actions to create or maintain landscapes resilient to climate change is challenging because of uncertainty associated with potential effects of climate change and their interactions with land management. We used a set of climate-informed state-and-transition models to explore the effects of management and natural disturbances on vegetation composition and structure under different future climates. Models were run for dry forests of central Oregon under a fire suppression scenario (i.e., no management other than the continued suppression of wildfires) and an active management scenario characterized by light to moderate thinning from below and some prescribed fire, planting, and salvage logging. Without climate change, area in dry province forest types remained constant. With climate change, dry mixed-conifer forests increased in area (by an average of 21–26% by 2100), and moist mixed-conifer forests decreased in area (by an average of 36–60% by 2100), under both management scenarios. Average area in dry mixed-conifer forests varied little by management scenario, but potential decreases in the moist mixed-conifer forest were lower with active management. With changing climate in the dry province of central Oregon, our results suggest the likelihood of sustaining current levels of dense, moist mixed-conifer forests with large-diameter, old trees is low (less than a 10% chance) irrespective of management scenario; an opposite trend was observed under no climate change simulations. However, results also suggest active management within the dry and moist mixed-conifer forests that creates less dense forest conditions can increase the persistence of larger-diameter, older trees across the landscape. Owing to projected increases in wildfire, our results also suggest future distributions of tree structures will differ from the present. Overall, our projections indicate proactive management can increase forest resilience and sustain some societal values, particularly in drier forest types. However, opportunities to create more disturbance-adapted systems are finite, all values likely cannot be sustained at current levels, and levels of resilience success will likely vary by dry province forest type. Land managers planning for a future without climate change may be assuming a future that is unlikely to exist.

Model-based conifer crown surface reconstruction from multi-ocular high-resolution aerial imagery

NASA Astrophysics Data System (ADS)

Sheng, Yongwei

2000-12-01

Tree crown parameters such as width, height, shape and crown closure are desirable in forestry and ecological studies, but they are time-consuming and labor intensive to measure in the field. The stereoscopic capability of high-resolution aerial imagery provides a way to crown surface reconstruction. Existing photogrammetric algorithms designed to map terrain surfaces, however, cannot adequately extract crown surfaces, especially for steep conifer crowns. Considering crown surface reconstruction in a broader context of tree characterization from aerial images, we develop a rigorous perspective tree image formation model to bridge image-based tree extraction and crown surface reconstruction, and an integrated model-based approach to conifer crown surface reconstruction. Based on the fact that most conifer crowns are in a solid geometric form, conifer crowns are modeled as a generalized hemi-ellipsoid. Both the automatic and semi-automatic approaches are investigated to optimal tree model development from multi-ocular images. The semi-automatic 3D tree interpreter developed in this thesis is able to efficiently extract reliable tree parameters and tree models in complicated tree stands. This thesis starts with a sophisticated stereo matching algorithm, and incorporates tree models to guide stereo matching. The following critical problems are addressed in the model-based surface reconstruction process: (1) the problem of surface model composition from tree models, (2) the occlusion problem in disparity prediction from tree models, (3) the problem of integrating the predicted disparities into image matching, (4) the tree model edge effect reduction on the disparity map, (5) the occlusion problem in orthophoto production, and (6) the foreshortening problem in image matching, which is very serious for conifer crown surfaces. Solutions to the above problems are necessary for successful crown surface reconstruction. The model-based approach was applied to recover the canopy surface of a dense redwood stand using tri-ocular high-resolution images scanned from 1:2,400 aerial photographs. The results demonstrate the approach's ability to reconstruct complicated stands. The model-based approach proposed in this thesis is potentially applicable to other surfaces recovering problems with a priori knowledge about objects.

An analysis of tree mortality using high resolution remotely-sensed data for mixed-conifer forests in San Diego county

NASA Astrophysics Data System (ADS)

Freeman, Mary Pyott

ABSTRACT An Analysis of Tree Mortality Using High Resolution Remotely-Sensed Data for Mixed-Conifer Forests in San Diego County by Mary Pyott Freeman The montane mixed-conifer forests of San Diego County are currently experiencing extensive tree mortality, which is defined as dieback where whole stands are affected. This mortality is likely the result of the complex interaction of many variables, such as altered fire regimes, climatic conditions such as drought, as well as forest pathogens and past management strategies. Conifer tree mortality and its spatial pattern and change over time were examined in three components. In component 1, two remote sensing approaches were compared for their effectiveness in delineating dead trees, a spatial contextual approach and an OBIA (object based image analysis) approach, utilizing various dates and spatial resolutions of airborne image data. For each approach transforms and masking techniques were explored, which were found to improve classifications, and an object-based assessment approach was tested. In component 2, dead tree maps produced by the most effective techniques derived from component 1 were utilized for point pattern and vector analyses to further understand spatio-temporal changes in tree mortality for the years 1997, 2000, 2002, and 2005 for three study areas: Palomar, Volcan and Laguna mountains. Plot-based fieldwork was conducted to further assess mortality patterns. Results indicate that conifer mortality was significantly clustered, increased substantially between 2002 and 2005, and was non-random with respect to tree species and diameter class sizes. In component 3, multiple environmental variables were used in Generalized Linear Model (GLM-logistic regression) and decision tree classifier model development, revealing the importance of climate and topographic factors such as precipitation and elevation, in being able to predict areas of high risk for tree mortality. The results from this study highlight the importance of multi-scale spatial as well as temporal analyses, in order to understand mixed-conifer forest structure, dynamics, and processes of decline, which can lead to more sustainable management of forests with continued natural and anthropogenic disturbance.

Increasing fire severity, alternate successional trajectories, and the carbon balance of Alaskan boreal forests

NASA Astrophysics Data System (ADS)

Mack, M. C.; Alexander, H. D.; Jean, M.; Melvin, A. M.; Johnstone, J. F.

2016-12-01

Climate-sensitive disturbances, such as wildfire, can feed back positively to climate warming via the carbon (C) cycle if C released by disturbance is not replaced over post-fire succession. In boreal forests, burning of carbon in deep organic soils is not only an important determinate of ecosystem element balance over the disturbance cycle, but also sets the conditions that control plant recruitment, species dominance and successional trajectory. Species dominance, in turn, has the potential to exert strong control over the plant-soil-microbial feedbacks that determine C and nutrient coupling, C storage, and ultimately, replacement of combusted C. We examined the consequences of increasing fire severity for C balance and C and nitrogen (N) coupling in Alaskan boreal forests. We estimated combustion losses in 90 black spruce (conifer) stands that burned in 2004. Over the next decade, we followed natural tree seedling establishment in these stands and used seedling species dominance identify conifer versus deciduous successional trajectories. We assembled data from 120 stands that varied in time after fire and successional trajectory, and estimated C and N dynamics across 150 years of post-fire succession for each trajectory. Conifer stands that burned with high severity transitioned to deciduous tree dominance after fire. These stands had smaller ecosystem pools of C and N before fire, lost a larger proportion of these pools during the fire, and began succession with smaller residual pools than stands that returned to conifer dominance after fire. Over secondary succession, deciduous stands accumulated about 10 times more carbon in aboveground biomass than conifer stands. Belowground biomass and soil carbon accumulation, by contrast, was about three times higher in the black spruce stands than in deciduous stands. As a result, net ecosystem C accumulation over the 100 year inter-fire interval was three times higher in deciduous stands than in coniferous stands. Nitrogen accumulation did not differ between the trajectories; high C:N ratio biomass accumulation in deciduous stands balanced low C:N ratio soil organic matter accumulation in conifer stands. The timing of N accumulation, however, differed substantially, supporting the idea that deciduous stands mine N from degrading permafrost after fire.

Coevolution between Hispaniolan crossbills and pine: does more time allow for greater phenotypic escalation at lower latitude?

PubMed

Parchman, Thomas L; Benkman, Craig W; Mezquida, Eduardo T

2007-09-01

Crossbills (Aves: Loxia) and several conifers have coevolved in predator-prey arms races over the last 10,000 years. However, the extent to which coevolutionary arms races have contributed to the adaptive radiation of crossbills or to any other adaptive radiation is largely unknown. Here we extend our previous studies of geographically structured coevolution by considering a crossbill-conifer interaction that has persisted for a much longer time period and involves a conifer with more variable annual seed production. We examined geographic variation in the cone and seed traits of two sister species of pines, Pinus occidentalis and P. cubensis, on the islands of Hispaniola and Cuba, respectively. We also compared the Hispaniolan crossbill (Loxia megaplaga) to its sister taxa the North American white-winged crossbill (Loxia leucoptera leucoptera). The Hispaniolan crossbill is endemic to Hispaniola whereas Cuba lacks crossbills. In addition and in contrast to previous studies, the variation in selection experienced by these pines due to crossbills is not confounded by the occurrence of selection by tree squirrels (Tamiasciurus and Sciurus). As predicted if P. occidentalis has evolved defenses in response to selection exerted by crossbills, cones of P. occidentalis have scales that are 53% thicker than those of P. cubensis. Cones of P. occidentalis, but not P. cubensis, also have well-developed spines, a known defense against vertebrate seed predators. Consistent with patterns of divergence seen in crossbills coevolving locally with other conifers, the Hispaniolan crossbill has evolved a bill that is 25% deeper than the white-winged crossbill. Together with phylogenetic analyses, our results suggest that predator-prey coevolution between Hispaniolan crossbills and P. occidentalis over approximately 600,000 years has caused substantial morphological evolution in both the crossbill and pine. This also indicates that cone crop fluctuations do not prevent crossbills and conifers from coevolving. Furthermore, because the traits at the phenotypic interface of the interaction apparently remain the same over at least several hundred thousand years, divergence as a result of coevolution is greater at lower latitude where crossbill-conifer interactions have been less interrupted by Pleistocene events.

Black-backed woodpecker habitat suitability mapping using conifer snag basal area estimated from airborne laser scanning

NASA Astrophysics Data System (ADS)

Casas Planes, Á.; Garcia, M.; Siegel, R.; Koltunov, A.; Ramirez, C.; Ustin, S.

2015-12-01

Occupancy and habitat suitability models for snag-dependent wildlife species are commonly defined as a function of snag basal area. Although critical for predicting or assessing habitat suitability, spatially distributed estimates of snag basal area are not generally available across landscapes at spatial scales relevant for conservation planning. This study evaluates the use of airborne laser scanning (ALS) to 1) identify individual conifer snags and map their basal area across a recently burned forest, and 2) map habitat suitability for a wildlife species known to be dependent on snag basal area, specifically the black-backed woodpecker (Picoides arcticus). This study focuses on the Rim Fire, a megafire that took place in 2013 in the Sierra Nevada Mountains of California, creating large patches of medium- and high-severity burned forest. We use forest inventory plots, single-tree ALS-derived metrics and Gaussian processes classification and regression to identify conifer snags and estimate their stem diameter and basal area. Then, we use the results to map habitat suitability for the black-backed woodpecker using thresholds for conifer basal area from a previously published habitat suitability model. Local maxima detection and watershed segmentation algorithms resulted in 75% detection of trees with stem diameter larger than 30 cm. Snags are identified with an overall accuracy of 91.8 % and conifer snags are identified with an overall accuracy of 84.8 %. Finally, Gaussian process regression reliably estimated stem diameter (R2 = 0.8) using height and crown area. This work provides a fast and efficient methodology to characterize the extent of a burned forest at the tree level and a critical tool for early wildlife assessment in post-fire forest management and biodiversity conservation.

Forest structure, stand composition, and climate-growth response in montane forests of Jiuzhaigou National Nature Reserve, China.

PubMed

Schwartz, Mark W; Dolanc, Christopher R; Gao, Hui; Strauss, Sharon Y; Schwartz, Ari C; Williams, John N; Tang, Ya

2013-01-01

Montane forests of western China provide an opportunity to establish baseline studies for climate change. The region is being impacted by climate change, air pollution, and significant human impacts from tourism. We analyzed forest stand structure and climate-growth relationships from Jiuzhaigou National Nature Reserve in northwestern Sichuan province, along the eastern edge of the Tibetan plateau. We conducted a survey to characterize forest stand diversity and structure in plots occurring between 2050 and 3350 m in elevation. We also evaluated seedling and sapling recruitment and tree-ring data from four conifer species to assess: 1) whether the forest appears in transition toward increased hardwood composition; 2) if conifers appear stressed by recent climate change relative to hardwoods; and 3) how growth of four dominant species responds to recent climate. Our study is complicated by clear evidence of 20(th) century timber extraction. Focusing on regions lacking evidence of logging, we found a diverse suite of conifers (Pinus, Abies, Juniperus, Picea, and Larix) strongly dominate the forest overstory. We found population size structures for most conifer tree species to be consistent with self-replacement and not providing evidence of shifting composition toward hardwoods. Climate-growth analyses indicate increased growth with cool temperatures in summer and fall. Warmer temperatures during the growing season could negatively impact conifer growth, indicating possible seasonal climate water deficit as a constraint on growth. In contrast, however, we found little relationship to seasonal precipitation. Projected warming does not yet have a discernible signal on trends in tree growth rates, but slower growth with warmer growing season climates suggests reduced potential future forest growth.

Multiscale habitat selection by Ruffed Grouse at low population densities

USGS Publications Warehouse

Zimmerman, G.S.; Gutierrez, R.J.; Thogmartin, W.E.; Banerjee, S.

2009-01-01

Theory suggests habitats should be chosen according to their relative evolutionary benefits and costs. It has been hypothesized that aspen (Populus spp.) forests provide optimal habitat for Ruffed Grouse (Bonasa umbellus). We used the low phase of a grouse population's cycle to assess the prediction that grouse should occupy aspen and avoid other forest types at low population density because of the presumptive fitness benefits of aspen. On the basis of our observations, we predict how the Ruffed Grouse population will increase in different forest types during the next cycle. In conifer (Pinus spp., Abies balsamea, Picea spp.)-dominated and mixed aspen-conifer landscapes, grouse densities were highest where forest types were evenly distributed. Within these landscapes, male Ruffed Grouse selected young aspen stands that were large and round or square. Although Ruffed Grouse selected young aspen stands strongly, contrary to prediction, they also used other forest types even when young aspen stands remained unoccupied. The relative densities of Ruffed Grouse in aspen and conifer forests indicated that the aspen forest's carrying capacities for grouse was higher than the conifer forest's at least during the low and declining phases of the grouse's cycle. On the basis of our observations, we predict that Ruffed Grouse populations in aspen-dominated landscapes will have higher population densities and fluctuate more than will populations in conifer-dominated landscapes. We suggest that studies of avian habitat selection would benefit from knowledge about the relative densities among habitats at differing population sizes because this information could provide insight into the role of habitat in regulating populations and clarify inferences from studies about habitat quality for birds. ?? 2009 by The Cooper Ornithological Society. All rights reserved.

Forest Structure, Stand Composition, and Climate-Growth Response in Montane Forests of Jiuzhaigou National Nature Reserve, China

PubMed Central

Schwartz, Mark W.; Dolanc, Christopher R.; Gao, Hui; Strauss, Sharon Y.; Schwartz, Ari C.; Williams, John N.; Tang, Ya

2013-01-01

Montane forests of western China provide an opportunity to establish baseline studies for climate change. The region is being impacted by climate change, air pollution, and significant human impacts from tourism. We analyzed forest stand structure and climate-growth relationships from Jiuzhaigou National Nature Reserve in northwestern Sichuan province, along the eastern edge of the Tibetan plateau. We conducted a survey to characterize forest stand diversity and structure in plots occurring between 2050 and 3350 m in elevation. We also evaluated seedling and sapling recruitment and tree-ring data from four conifer species to assess: 1) whether the forest appears in transition toward increased hardwood composition; 2) if conifers appear stressed by recent climate change relative to hardwoods; and 3) how growth of four dominant species responds to recent climate. Our study is complicated by clear evidence of 20th century timber extraction. Focusing on regions lacking evidence of logging, we found a diverse suite of conifers (Pinus, Abies, Juniperus, Picea, and Larix) strongly dominate the forest overstory. We found population size structures for most conifer tree species to be consistent with self-replacement and not providing evidence of shifting composition toward hardwoods. Climate-growth analyses indicate increased growth with cool temperatures in summer and fall. Warmer temperatures during the growing season could negatively impact conifer growth, indicating possible seasonal climate water deficit as a constraint on growth. In contrast, however, we found little relationship to seasonal precipitation. Projected warming does not yet have a discernible signal on trends in tree growth rates, but slower growth with warmer growing season climates suggests reduced potential future forest growth. PMID:23951188

Mesophyll conductance and leaf carbon isotope composition of two high elevation conifers along an altitudinal gradient

NASA Astrophysics Data System (ADS)

Guo, J.; Beverly, D.; Cook, C.; Ewers, B.; Williams, D. G.

2016-12-01

Carbon isotope ratio values (δ13C) of conifer leaf material generally increases with elevation, potentially reflecting decreases in the leaf internal to ambient CO2 concentration ratio (Ci/Ca) during photosynthesis. Reduced stomatal conductance or increased carboxylation capacity with increasing elevation could account for these patterns. But some studies reported conifers δ13C increased with altitude consistently, but Ci/Ca did not significantly decrease and leaf nitrogen content remained constant with increasing of altitude in Central Rockies. Variation in leaf mesophyll conductance to CO2 diffusion, which influences leaf δ13C independently of effects related to stomatal conductance and carboxylation demand, might reconcile these conflicting observations. Leaf mass per unit area (LMA) increases with altitude and often correlates with δ13C and mesophyll conductance. Therefore, we hypothesized that increases in δ13C of conifers with altitude are controlled mainly by changes in mesophyll conductance. To test this hypothesis, leaf δ13C, photosynthetic capacity, leaf nitrogen content, LMA, and mesophyll conductance were determined on leaves of two dominant conifers (Pinus contorta and Picea engelmannii) along a 90-km transect in SE Wyoming at altitudes ranging from 2400 to 3200 m above sea level. Mesophyll conductance was determined by on-line 13C discrimination using isotope laser spectroscopy. We expected to observe relatively small differences in stomatal conductance and decreases in mesophyll conductance from lower and higher altitude sites. Such a pattern would have important implications for how differences in leaf δ13C values across altitude are interpreted in relation to forest water use and productivity from scaling of leaf-level water-use efficiency.

Conifer reproductive development involves B-type MADS-box genes with distinct and different activities in male organ primordia.

PubMed

Sundström, Jens; Engström, Peter

2002-07-01

The Norway spruce MADS-box genes DAL11, DAL12 and DAL13 are phylogenetically related to the angiosperm B-function MADS-box genes: genes that act together with A-function genes in specifying petal identity and with C-function genes in specifying stamen identity to floral organs. In this report we present evidence to suggest that the B-gene function in the specification of identity of the pollen-bearing organs has been conserved between conifers and angiosperms. Expression of DAL11 or DAL12 in transgenic Arabidopsis causes phenotypic changes which partly resemble those caused by ectopic expression of the endogenous B-genes. In similar experiments, flowers of Arabidopsis plants expressing DAL13 showed a different homeotic change in that they formed ectopic anthers in whorls one, two or four. We also demonstrate the capacity of the spruce gene products to form homodimers, and that DAL11 and DAL13 may form heterodimers with each other and with the Arabidopsis B-protein AP3, but not with PI, the second B-gene product in Arabidopsis. In situ hybridization experiments show that the conifer B-like genes are expressed specifically in developing pollen cones, but differ in both temporal and spatial distribution patterns. These results suggest that the B-function in conifers is dual and is separated into a meristem identity and an organ identity function, the latter function possibly being independent of an interaction with the C-function. Thus, even though an ancestral B-function may have acted in combination with C to specify micro- and megasporangia, the B-function has evolved differently in conifers and angiosperms.

Regeneration patterns of a long-lived dominant conifer and the effects of logging in southern South America

NASA Astrophysics Data System (ADS)

Souza, Alexandre F.; Forgiarini, Cristiane; Longhi, Solon Jonas; Brena, Doádi Antônio

2008-09-01

The regeneration ecology of the long-lived conifer Araucaria angustifolia was studied in São Francisco de Paula, southern Brazil. We evaluated the expectations that: (i) size distribution of populations of Araucaria angustifolia, a large conifer that dominates southern Brazil's mixed forests, is left-skewed in old-growth forests but right-skewed in logged forests, indicating chronic recruitment failure in the first kind of habitat as well as a recruitment pulse in the second; (ii) seedlings and juveniles are found under more open-canopy microsites than would be expected by chance; and (iii) reproductive females would be aggregated at the coarse spatial scales in which past massive recruitment events are expected to have occurred, and young plants would be spatially associated with females due to the prevalence of vertebrate and large-bird seed dispersers. Data were collected in the threatened mixed conifer-hardwood forests in southern Brazil in ten 1-ha plots and one 0.25-ha plot that was hit by a small tornado in 2003. Five of these plots corresponded to unlogged old-growth forests, three to forests where A. angustifolia was selectively logged ca. 60 years ago and two to forests selectively logged ca. 20 years ago. For the first time, ontogenetic life stages of this important conifer are identified and described. The first and second expectations were fulfilled, and the third was partially fulfilled, since seedlings and juveniles were hardly ever associated with reproductive females. These results confirm the generalization of the current conceptual model of emergent long-lived pioneer regeneration to Araucaria angustifolia and associate its regeneration niche to the occupation of large-scale disturbances with long return times.

The heterogeneous levels of linkage disequilibrium in white spruce genes and comparative analysis with other conifers.

PubMed

Pavy, N; Namroud, M-C; Gagnon, F; Isabel, N; Bousquet, J

2012-03-01

In plants, knowledge about linkage disequilibrium (LD) is relevant for the design of efficient single-nucleotide polymorphism arrays in relation to their use in population and association genomics studies. Previous studies of conifer genes have shown LD to decay rapidly within gene limits, but exceptions have been reported. To evaluate the extent of heterogeneity of LD among conifer genes and its potential causes, we examined LD in 105 genes of white spruce (Picea glauca) by sequencing a panel of 48 haploid megagametophytes from natural populations and further compared it with LD in other conifer species. The average pairwise r(2) value was 0.19 (s.d.=0.19), and LD dropped quickly with a half-decay being reached at a distance of 65 nucleotides between sites. However, LD was significantly heterogeneous among genes. A first group of 29 genes had stronger LD (mean r(2)=0.28), and a second group of 38 genes had weaker LD (mean r(2)=0.12). While a strong relationship was found with the recombination rate, there was no obvious relationship between LD and functional classification. The level of nucleotide diversity, which was highly heterogeneous across genes, was also not significantly correlated with LD. A search for selection signatures highlighted significant deviations from the standard neutral model, which could be mostly attributed to recent demographic changes. Little evidence was seen for hitchhiking and clear relationships with LD. When compared among conifer species, on average, levels of LD were similar in genes from white spruce, Norway spruce and Scots pine, whereas loblolly pine and Douglas fir genes exhibited a significantly higher LD.

Highly rearranged and size-variable chloroplast genomes in conifers II clade (cupressophytes): evolution towards shorter intergenic spacers.

PubMed

Wu, Chung-Shien; Chaw, Shu-Miaw

2014-04-01

Although conifers are of immense ecological and economic value, bioengineering of their chloroplasts remains undeveloped. Understanding the chloroplast genomic organization of conifers can facilitate their bioengineering. Members of the conifer II clade (or cupressophytes) are highly diverse in both morphologic features and chloroplast genomic organization. We compared six cupressophyte chloroplast genomes (cpDNAs) that represent four of the five cupressophyte families, including three genomes that are first reported here (Agathis dammara, Calocedrus formosana and Nageia nagi). The six cupressophyte cpDNAs have lost a pair of large inverted repeats (IRs) and vary greatly in size, organization and tRNA copies. We demonstrate that cupressophyte cpDNAs have evolved towards reduced size, largely due to shrunken intergenic spacers. In cupressophytes, cpDNA rearrangements are capable of extending intergenic spacers, and synonymous mutations are negatively associated with the size and frequency of rearrangements. The variable cpDNA sizes of cupressophytes may have been shaped by mutational burden and genomic rearrangements. On the basis of cpDNA organization, our analyses revealed that in gymnosperms, cpDNA rearrangements are phylogenetically informative, which supports the 'gnepines' clade. In addition, removal of a specific IR influences the minimal rearrangements required for the gnepines and cupressophyte clades, whereby Pinaceae favours the removal of IRB but cupressophytes exclusion of IRA. This result strongly suggests that different IR copies have been lost from conifers I and II. Our data help understand the complexity and evolution of cupressophyte cpDNAs. © 2013 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology, The Association of Applied Biologists and John Wiley & Sons Ltd.

The evolutionary implications of knox-I gene duplications in conifers: correlated evidence from phylogeny, gene mapping, and analysis of functional divergence.

PubMed

Guillet-Claude, Carine; Isabel, Nathalie; Pelgas, Betty; Bousquet, Jean

2004-12-01

Class I knox genes code for transcription factors that play an essential role in plant growth and development as central regulators of meristem cell identity. Based on the analysis of new cDNA sequences from various tissues and genomic DNA sequences, we identified a highly diversified group of class I knox genes in conifers. Phylogenetic analyses of complete amino acid sequences from various seed plants indicated that all conifer sequences formed a monophyletic group. Within conifers, four subgroups here named genes KN1 to KN4 were well delineated, each regrouping pine and spruce sequences. KN4 was sister group to KN3, which was sister group to KN1 and KN2. Genetic mapping on the genomes of two divergent Picea species indicated that KN1 and KN2 are located close to each other on the same linkage group, whereas KN3 and KN4 mapped on different linkage groups, correlating the more ancient divergence of these two genes. The proportion of synonymous and nonsynonymous substitutions suggested intense purifying selection for the four genes. However, rates of substitution per year indicated an evolution in two steps: faster rates were noted after gene duplications, followed subsequently by lower rates. Positive directional selection was detected for most of the internal branches harboring an accelerated rate of evolution. In addition, many sites with highly significant amino acid rate shift were identified between these branches. However, the tightly linked KN1 and KN2 did not diverge as much from each other. The implications of the correlation between phylogenetic, structural, and functional information are discussed in relation to the diversification of the knox-I gene family in conifers.

Analysis of conifer forest regeneration using Landsat Thematic Mapper data

NASA Technical Reports Server (NTRS)

Fiorella, Maria; Ripple, William J.

1995-01-01

Landsat Thematic Mapper (TM) data were used to evaluate young conifer stands in the western Cascade Mountains of Oregon. Regression and correlation analyses were used to describe the relationships between TM band values and age of young Douglas-fir stands (2 to 35 years old). Spectral data from well regenerated Douglas-fir stands were compared to those of poorly regenerated conifer stands. TM bands 1, 2, 3, 5, 6, and 7 were inversely correlated with the age (r greater than or equal to -0.80) of well regenerated Douglas-fir stands. Overall, the 'structural index' (TM 4/5 ratio) had the highest correlation to age of Douglas-fir stands (r = 0.96). Poorly regenerated stands were spectrally distinct from well regenerated Douglas-fir stands after the stands reached an age of approximately 15 years.

Early remote laser detection of vegetation damage caused by certain environmental stress factors

NASA Technical Reports Server (NTRS)

Chappelle, Emmett W.; Mcmurtrey, James E., III

1989-01-01

The fluorescence spectra of plants excited with a pulsed nitrogen laser beam emitting at 337 nm were found to be related to plant type, as well as with changes in the physiology of the plant as the result of various kinds of environmental stress. The plant types which were studied included herbaceous dicots, monocots, hardwoods, and conifers. These plant types could be identified on the basis of differences in either the number of fluorescent bands, or the relative intensity of the bands. The dicots and monocots had fluorescent maxima at 440, 685, and 740 nm. The monocots could be distinguished from the dicots by virtue of having a much higher 440 nm/685 nm ratio. Hardwoods and conifers had an additional fluorescence band at 525 nm, but healthy conifers did not have a band at 685 nm.

Effects of photochemical oxidants on radial growth increment for five species of conifers in the San Bernardino National Forest

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ohmart, C.P.; Williams, C.B. Jr.

1979-12-01

Conifers on six vegetation plots - two sustaining severe visual oxidant injury to coniferous tree foliage, two exhibiting moderate foliar injury, and two indicating slight or no injury to foliage - were examined for loss of radial growth increment due to oxidant exposure in the San Bernardino National Forest. Five coniferous species were examined: Pinus ponderosa, P. jeffreyi, P. lambertiana, Abies concolor, and Libocedrus decurrens. P. ponderosa and A. concolor growing on the two heavily injured plots showed significant reductions in radial growth increment, whereas L. decurrens showed no response. P. jeffreyi and P. lambertiana did not occur on themore » heavily injured plots. Conifers on the other four plots exhibited no growth response to oxidant exposure. 7 references, 6 figures, 1 table.« less

Incidence and effects of endemic populations of forest pests in young mixed-conifer forests of the Sierra Nevada

Treesearch

Carroll B. Williams; David L. Azuma; George T. Ferrell

1992-01-01

Approximately 3.200 trees in young mixed-conifer stands were examined for pest activity and human-caused or mechanical injuries, and approximately 25 percent of these trees were randomly selected for stem analyses. The examination of trees felled for stem analyses showed that 409 (47 percent) were free of pests and 466 (53 percent) had one or more pest categories....

Magnetic properties of CoNiFe alloys electrodeposited under potential and current control conditions

NASA Astrophysics Data System (ADS)

Perez, L.; Attenborough, K.; De Boeck, J.; Celis, J. P.; Aroca, C.; Sánchez, P.; López, E.; Sánchez, M. C.

2002-04-01

Electrodeposited CoNiFe alloys have been produced under potential and current control conditions. It was found that composition, crystalline structure and magnetic properties are the same irrespective of which plating control is used. Magnetic anisotropy is present in the softest samples. A study of the dependence of magnetic properties and domain structure on the thickness of the films is also reported.

Stand Structure and Composition 32 Years after Precommercial Thinning Treatments in a Mixed Northern Conifer Stand in Central Maine

Treesearch

Aaron R. Weiskittel; Laura S. Kenefic; Rongxia Li; John Brissette

2011-01-01

The effects of four precommercial thinning (PCT) treatments on an even-aged northern conifer stand in Maine were investigated by examining stand structure and composition 32 years after treatment. Replicated treatments applied in 1976 included: (1) control (no PCT), (2) row thinning (rowthin; 5-ft-wide row removal with 3-ft-wide residual strips), (3) row thinning with...

The hydraulic architecture of conifers

Treesearch

Uwe G Hacke; Barbara Lachenbruch; Jarmila Pittermann; Stefan Mayr; Jean-Christophe Domec; Paul J. Schulte

2015-01-01

Conifers survive in diverse and sometimes extreme environments (Fig. 2.1a–f). Piñon-juniper communities are found in semi-arid environments, receiving ca. 400 mm of yearly precipitation (Linton et al. 1998), which is less than half the average precipitations received by other coniferous tree species worldwide. Picea mariana and Larix laricina grow in boreal peatlands...

Black bear damage to lodgepole pine in central Oregon

USGS Publications Warehouse

Barnes, V.G.; Engeman, R.M.

1995-01-01

Black bear damage to 108 lodgepole pine trees was found in mixed conifer habitat in central Oregon. No trees of three other conifer species were injured. Eighty-nine percent of the damage occurred in the same year. Nearly 20% of the freshly damaged trees had bark removed from more than 75% of the circumference and, judging from the fate of trees damaged in prior years, probably succumbed.

Introduction to the special issue on Sierran mixed-conifer research

Treesearch

Malcolm North; Jiquan Chen

2005-01-01

Like much of the western United States, California’s forest has been severely altered by a century of fire suppression. The Sierra Nevada’s largest forest type, mixed conifer, which is primary habitat for more vertebrate species than any other Californian forest community, historically burned every 12–17 years. In 1894, John Muir wrote "The inviting openness of...

Fine Root Dynamics and Forest Production Across a Calcium Gradient in Northern Hardwood and Conifer Ecosystems

Treesearch

Byung Bae Park; Ruth D. Yanai; Timothy J. Fahey; Scott W. Bailey; Thomas G. Siccama; James B. Shanley; Natalie L. Cleavitt

2008-01-01

Losses of soil base cations due to acid rain have been implicated in declines of red spruce and sugar maple in the northeastern USA. We studied fine root and aboveground biomass and production in five northern hardwood and three conifer stands differing in soil Ca status at Sleepers River, VT; Hubbard Brook, NH; and Cone Pond, NH. Neither aboveground biomass and...

Effects of diterpene acids on components of a conifer bark beetle–fungal interaction: tolerance by Ips pini and sensitivity by its associate Ophiostoma ips

Treesearch

Brian J. Kopper; Barbara L. Illman; Philip J. Kersten; Kier D. Klepzig; Kenneth F. Raffa

2005-01-01

Conifer resin and phloem tissue contain several phytochemical groups,composed primarily of monoterpenes,diterpene acids, and stilbene phenolics. The effects of monoterpenes and phenolics on stem-colonizing bark beetles and their associated microorganisms have been studied to some extent, but the roles of diterpene acids are largely unknown. Diterpene acids are known to...

Effects of diterpene acids on components of a conifer bark beetle-fungal interaction : tolerance by Ips pini and sensitivity by its associate Ophiostoma ips

Treesearch

Brian J. Kopper; Barbara L. Illman; Philip J. Kersten; Kier D. Klepzig; Kenneth F. Raffa

2005-01-01

Conifer resin and phloem tissue contain several phytochemical groups, composed primarily of monoterpenes, diterpene acids, and stilbene phenolics. The effects of monoterpenes and phenolics on stem-colonizing bark beetles and their associated microorganisms have been studied to some extent, but the roles of diterpene acids are largely unknown. Diterpene acids are known...

Soil nutrients and microbial activity after early and late season prescribed burns in a Sierra Nevada mixed conifer forest

Treesearch

Sarah T. Hamman; Ingrid C. Burke; Eric E. Knapp

2008-01-01

Restoring the natural fire regime to forested systems that have experienced fire exclusion throughout the past century can be a challenge due to the heavy fuel loading conditions. Fire is being re-introduced to mixed conifer forests in the Sierra Nevada through both early season and late season prescribed burns, even though most fires historically occurred in the late...

Contrasting Patterns of Diterpene Acid Induction by Red Pine and White Spruce to Simulated Bark Beetle Attack, and Interspecific Differences in Sensitivity Among Fungal Associates

Treesearch

Charles J. Mason; Kier D. Klepzig; Brian J. Kopper; Philip J. Kersten; Barbara L. Illman; Kenneth F. Raffa

2015-01-01

Conifers possess a suite of physiochemical defenses that protect their subcortical tissues from bark beetle -fungal complexes. These defenses include rapid induction of terpenoids and phenolics at the site of attack. Studies of the distribution, induction, and bioactivity of conifer terpenoids have focused heavily on monoterpenes. We assessed induction of diterpene...

Fire decreases arthropod abundance but increases diversity: early and late season prescribed fire effects in a Sierra Nevada mixed-conifer forest

Treesearch

Scott M. Ferrenberg; Dylan W. Schwilk; Eric E. Knapp; Eric Groth; Jon E. Keeley

2006-01-01

Prior to fire suppression in the 20th century, the mixed-conifer forests of the Sierra Nevada, California, U.S.A., historically burned in frequent fires that typically occurred during the late summer and early fall. Fire managers have been attempting to restore natural ecosystem processes through prescription burning, and have often favored burning during the fall in...

CalPro: a spreadsheet program for the management of California mixed-conifer stands.

Treesearch

Jingjing Liang; Joseph Buongiorno; Robert A. Monserud

2004-01-01

CalPro is an add-in program developed to work with Microsoft Excel to simulate the growth and management of uneven-aged mixed-conifer stands in California. Its built-in growth model was calibrated from 177 uneven-aged plots on industry and other private lands. Stands are described by the number of trees per acre in each of nineteen 2-inch diameter classes in...

Regeneration in United States Department of Agriculture Forest Service mixed conifer partial cuttings in the Blue Mountains of Oregon and Washington.

Treesearch

K.W. Seidel; S. Conrade. Head

1983-01-01

A survey in the Blue Mountains of north-eastern Oregon and southeastern Washington showed that, on the average, partial cuts in the grand fir/big huckleberry community were well stocked with a mixture of advance, natural post-harvest, and planted reproduction of a number of species. Partial cuts in the mixed conifer/pinegrass community had considerably fewer seedlings...

Northeastern conifer research: Multiple species and multiple values

Treesearch

Laura S. Kenefic; John C. Brissette; Richard W. Judd

2014-01-01

The northern conifer, or spruce-fir, forest of the northeastern USA and adjacent Canada has had a defining influence on the economy and culture of the region. The same can be said of the USDA Forest Service’s research in this forest, which began more than 100 years ago. Forest Service research has evolved since that time in response to changes in the needs and...

Influence of fire and El Niño on tree recruitment by Sierran mixed conifer

Treesearch

Malcolm North; Matthew Hurteau; Robert Fiegener; Michael Barbour

2005-01-01

The influence of fire and climate events on age structure of different species was examined in old-growth mixed conifer in the southern Sierra Nevada. Within a 48-ha stem-mapped sample area, after a mechanical thinning, all stumps were examined for fire scars and 526 stumps were cut to ground level and aged. Before 1865, which was the last widespread fire event, the...

Silviculture affects composition, growth, and yield in mixed northern conifers: 40-year results from the Penobscot Experimental Forest

Treesearch

Paul E. Sendak; John C. Brissette; Robert M. Frank

2003-01-01

This long-term experiment in Maine, U.S.A., was designed to provide information on the best silvicultural practices for managing stands of mixed northern conifers in northeastern U.S.A. We evaluated growth and yield and changes in species composition, quality, and structure during the first 40 years of the experiment. Replicated treatments include the selection system...

An advancement in removing extraneous color from wood for low-magnification reflected-light image analysis of conifer tree rings

Treesearch

Paul R. Sheppard; Alex Wiedenhoeft

2007-01-01

This paper describes the removal of extraneous color from increment cores of conifers prior to reflected-light image analysis of tree rings. Ponderosa pine in central New Mexico was chosen for study. Peroxide bleaching was used as a pretreatment to remove extraneous color and still yield usable wood for image analysis. The cores were bleached in 3% peroxide raised to...

The photochemical reflectance index provides an optical indicator of spring photosynthetic activation in evergreen conifers.

PubMed

Wong, Christopher Y S; Gamon, John A

2015-04-01

In evergreens, the seasonal down-regulation and reactivation of photosynthesis is largely invisible and difficult to assess with remote sensing. This invisible phenology may be changing as a result of climate change. To better understand the mechanism and timing of these hidden physiological transitions, we explored several assays and optical indicators of spring photosynthetic activation in conifers exposed to a boreal climate. The photochemical reflectance index (PRI), chlorophyll fluorescence, and leaf pigments for evergreen conifer seedlings were monitored over 1 yr of a boreal climate with the addition of gas exchange during the spring. PRI, electron transport rate, pigment levels, light-use efficiency and photosynthesis all exhibited striking seasonal changes, with varying kinetics and strengths of correlation, which were used to evaluate the mechanisms and timing of spring activation. PRI and pigment pools were closely timed with photosynthetic reactivation measured by gas exchange. The PRI provided a clear optical indicator of spring photosynthetic activation that was detectable at leaf and stand scales in conifers. We propose that PRI might provide a useful metric of effective growing season length amenable to remote sensing and could improve remote-sensing-driven models of carbon uptake in evergreen ecosystems. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Cell size and wall dimensions drive distinct variability of earlywood and latewood density in Northern Hemisphere conifers.

PubMed

Björklund, Jesper; Seftigen, Kristina; Schweingruber, Fritz; Fonti, Patrick; von Arx, Georg; Bryukhanova, Marina V; Cuny, Henri E; Carrer, Marco; Castagneri, Daniele; Frank, David C

2017-11-01

Interannual variability of wood density - an important plant functional trait and environmental proxy - in conifers is poorly understood. We therefore explored the anatomical basis of density. We hypothesized that earlywood density is determined by tracheid size and latewood density by wall dimensions, reflecting their different functional tasks. To determine general patterns of variability, density parameters from 27 species and 349 sites across the Northern Hemisphere were correlated to tree-ring width parameters and local climate. We performed the same analyses with density and width derived from anatomical data comprising two species and eight sites. The contributions of tracheid size and wall dimensions to density were disentangled with sensitivity analyses. Notably, correlations between density and width shifted from negative to positive moving from earlywood to latewood. Temperature responses of density varied intraseasonally in strength and sign. The sensitivity analyses revealed tracheid size as the main determinant of earlywood density, while wall dimensions become more influential for latewood density. Our novel approach of integrating detailed anatomical data with large-scale tree-ring data allowed us to contribute to an improved understanding of interannual variations of conifer growth and to illustrate how conifers balance investments in the competing xylem functions of hydraulics and mechanical support. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Conifer Stored Resources and Resistance to a Fungus Associated with the Spruce Bark Beetle Ips typographus

PubMed Central

Lahr, Eleanor C.; Krokene, Paal

2013-01-01

Bark beetles and associated fungi are among the greatest natural threats to conifers worldwide. Conifers have potent defenses, but resistance to beetles and fungal pathogens may be reduced if tree stored resources are consumed by fungi rather than used for tree defense. Here, we assessed the relationship between tree stored resources and resistance to Ceratocystis polonica, a phytopathogenic fungus vectored by the spruce bark beetle Ips typographus. We measured phloem and sapwood nitrogen, non-structural carbohydrates (NSC), and lipids before and after trees were attacked by I. typographus (vectoring C. polonica) or artificially inoculated with C. polonica alone. Tree resistance was assessed by measuring phloem lesions and the proportion of necrotic phloem around the tree's circumference following attack or inoculation. While initial resource concentrations were unrelated to tree resistance to C. polonica, over time, phloem NSC and sapwood lipids declined in the trees inoculated with C. polonica. Greater resource declines correlated with less resistant trees (trees with larger lesions or more necrotic phloem), suggesting that resource depletion may be caused by fungal consumption rather than tree resistance. Ips typographus may then benefit indirectly from reduced tree defenses caused by fungal resource uptake. Our research on tree stored resources represents a novel way of understanding bark beetle-fungal-conifer interactions. PMID:23967298

The enigma of effective pathlength for 18O enrichment in leaf water of conifers

NASA Astrophysics Data System (ADS)

Roden, J. S.; Kahmen, A.; Buchmann, N. C.; Siegwolf, R. T.

2013-12-01

The stable isotopes of oxygen (δ18O) in tree ring cellulose provide valuable proxy information about past environments and climate. Mechanistic models have been used to clarify the important drivers of isotope fractionation and help interpret δ18O variation in tree rings. A critical component to these models is an estimate of leaf water enrichment. However, standard models seldom accurately predict 18O enrichment in conifer needles and Péclet corrections often require effective pathlengths (L) that seem unreasonable from the perspective of needle morphology (>0.5 m). To analyze the potential role of path length on the Péclet effect in conifers we carried out experiments in controlled environment chambers. We exposed seedlings of six species of conifer (Abies alba, Larix decidua, Picea abies, Pinus cembra, P. sylvestris, Taxus bacata), that differ in needle morphology, to four different vapor pressure deficits (VPD), in order to modify transpiration rates (E) and leaf water 18O enrichment. Environmental and δ18O data (leaf, stem and chamber water vapor) were collected to parameterize leaf water models. Cross-sections of needles were sampled for an analysis of needle anatomy. Conifer needles have a single strand of vascular tissue making pathlength determinations through anatomical assessments possible. The six species differed in mesophyll distance (measured from endodermis to epidermis) and cell number, with Pinus and Picea species having the shortest distance and Abies and Taxus the longest (flat needle morphology). Other anatomical measures (transfusion distance, cell size etc.) did not differ significantly. A suberized strip was apparent in the endodermis of all species except Taxus and Abies. Conifer needles have a large proportion (from 0.2 to 0.4) of needle cross-sectional area in vascular tissues that may not be subject to evaporative enrichment. As expected, leaf water δ18O and E responded strongly to VPD and standard models (Craig-Gordon) overestimated leaf water δ18O. A single species-specific value for L could not be determined as the fractional difference between modeled and measured leaf water δ18O did not increase with E as theory predicts. Accounting for potentially unenriched water in vascular and transfusion tissues as well as a Péclet correction that allows the value for L to change with E (as in Song et al., 2013) produced accurate predictions of leaf water δ18O. Estimates of L (for a given E) were positively correlated with mean mesophyll thickness, which to our knowledge is the first time L has been related to a leaf anatomical measure. We repeated the experiment using young needles with much higher values for E, and found a continuing trend of reduced fractional difference with E, implying that Péclet corrections may need to be modified to predict conifer needle water over the range of needle phenology and physiology. Our study will help to better quantify effective pathlength and needle water δ18O in conifers, which are some of the most important organisms used for paleoclimate reconstruction.

Comparative effects of urea fertilizer and red alder in a site III, coast Douglas-fir plantation in the Washington Cascade Range.

Treesearch

Richard E. Miller; Harry W. Anderson; Marshall Murray; Rick. Leon

2005-01-01

Five randomly assigned treatments were used to quantify effects of adding varying numbers of red alder (Alnus rubra Bong.) or nitrogen (N) fertilization on growth of a 10-year-old conifer plantation at a medium quality site in the western Washington Cascade Range. Zero, 20, 40, and 80 alder trees per acre were retained along with about 300 conifers...

Damage and mortality assessment of redwood and mixed conifer forest types in Santa Cruz County following wildfire

Treesearch

Steve R. Auten; Nadia Hamey

2012-01-01

On August 12, 2009, the Lockheed Fire ignited the west slope of the Santa Cruz Mountains burning approximately 7,819 acres. A mixture of vegetation types were in the path of the fire, including approximately 2,420 acres of redwood forest and 1,951 acres of mixed conifer forest types representative of the Santa Cruz Mountains. Foresters and land managers were left with...

Extraction and estimation of the quantity of calcium oxalate crystals in the foliage of conifer and hardwood trees

Treesearch

Rakesh Minocha; Bradley Chamberlain; Stephanie Long; Swathi A. Turlapati; Gloria Quigley

2015-01-01

The main goal of this study was to develop a method for the extraction and indirect estimation of the quantity of calcium oxalate (CaOx) in the foliage of trees. Foliar tissue was collected from a single tree of each species (five conifers and five hardwoods) for comparison of extractions in different solvents using 10 replicates per species from the same pool of...

Fire-scar formation in Jeffrey pine - mixed conifer forests in the Sierra San Pedro Martir, Mexico

Treesearch

Scott L. Stephens; Danny L. Fry; Brandon M. Collins; Carl N. Skinner; Ernesto Franco-Vizcaino; Travis J. Freed

2010-01-01

Little is known about the probability of fire-scar formation. In this study, we examined all mixed conifer trees for fire-scar formation in a 16 ha watershed that burned as part of a 2003 wildfire in Sierra San Pedro Ma´rtir National Park (SSPM), Mexico. In addition, we examine the probability of fire-scar formation in relation to the previous fire interval in forests...

Fire performance in traditional silvicultural and fire and fire surrogate treatments in Sierran mixed-conifer forests: a brief summary

Treesearch

Jason J. Moghaddas; Scott L. Stephens

2007-01-01

Mixed conifer forests cover 7.9 million acres of California’s total land base. Forest structure in these forests has been influenced by harvest practices and silvicultural systems implemented since the beginning of the California Gold Rush in 1849. Today, the role of fire in coniferous forests, both in shaping past stand structure and its ability to shape future...

Natural range of variation for yellow pine and mixed-conifer forests in the Sierra Nevada, southern Cascades, and Modoc and Inyo National Forests, California, USA

Treesearch

Hugh D. Safford; Jens T. Stevens

2017-01-01

Yellow pine and mixed-conifer (YPMC) forests are the predominant montane forest type in the Sierra Nevada, southern Cascade Range, and neighboring forested areas on the Modoc and Inyo National Forests (the "assessment area"). YPMC forests occur above the oak woodland belt and below red fir forests, and are dominated by the yellow pines (ponderosa pine [

Multi-scale habitat relationships of snowshoe hares (Lepus americanus) in the mixed conifer landscape of the Northern Rockies, USA: Cross-scale effects of horizontal cover with implications for forest management

Treesearch

Joseph D. Holbrook; John R. Squires; Lucretia E. Olson; Rick L. Lawrence; Shannon L. Savage

2016-01-01

Snowshoe hares (Lepus americanus) are an ecologically important herbivore because they modify vegetation through browsing and serve as a prey resource for multiple predators. We implemented a multiscale approach to characterize habitat relationships for snowshoe hares across the mixed conifer landscape of the northern Rocky Mountains, USA. Our objectives were to (1)...

Initial tree mortality, and insect and pathogen response to fire and thinning restoration treatments in an old growth, mixed-conifer forest of the Sierra Nevada, California

Treesearch

P. Maloney; T. Smith; C. Jensen; J. Innes; D. Rizzo; M. North

2008-01-01

Fire and thinning restoration treatments in fire-suppressed forests often damage or stress leave trees, altering pathogen and insect affects. We compared types of insect- and pathogen-mediated mortality on mixed-conifer trees 3years after treatment. The number of bark beetle attacked trees was greater in burn treatments compared with no-burn treatments, and in some...

Agroforestry: Conifers. (Latest citations from the Cab Abstracts database). NewSearch

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

The bibliography contains citations concerning the use of lands forested with conifers for crop and livestock production. Citations cover the grazing of livestock and the production of crops, including tomatoes, soybeans, lespedeza, wheat, rape, taro, cotton, cabbages, ginger, watermelons, and strawberries. Livestock discussed include cattle, sheep, geese, and horses. Economic analyses and economic models are presented. (Contains a minimum of 147 citations and includes a subject term index and title list.)

A remotely sensed pigment index reveals photosynthetic phenology in evergreen conifers

PubMed Central

Huemmrich, K. Fred; Ensminger, Ingo; Garrity, Steven; Noormets, Asko; Peñuelas, Josep

2016-01-01

In evergreen conifers, where the foliage amount changes little with season, accurate detection of the underlying “photosynthetic phenology” from satellite remote sensing has been difficult, presenting challenges for global models of ecosystem carbon uptake. Here, we report a close correspondence between seasonally changing foliar pigment levels, expressed as chlorophyll/carotenoid ratios, and evergreen photosynthetic activity, leading to a “chlorophyll/carotenoid index” (CCI) that tracks evergreen photosynthesis at multiple spatial scales. When calculated from NASA’s Moderate Resolution Imaging Spectroradiometer satellite sensor, the CCI closely follows the seasonal patterns of daily gross primary productivity of evergreen conifer stands measured by eddy covariance. This discovery provides a way of monitoring evergreen photosynthetic activity from optical remote sensing, and indicates an important regulatory role for carotenoid pigments in evergreen photosynthesis. Improved methods of monitoring photosynthesis from space can improve our understanding of the global carbon budget in a warming world of changing vegetation phenology. PMID:27803333

A remotely sensed pigment index reveals photosynthetic phenology in evergreen conifers.

PubMed

Gamon, John A; Huemmrich, K Fred; Wong, Christopher Y S; Ensminger, Ingo; Garrity, Steven; Hollinger, David Y; Noormets, Asko; Peñuelas, Josep

2016-11-15

In evergreen conifers, where the foliage amount changes little with season, accurate detection of the underlying "photosynthetic phenology" from satellite remote sensing has been difficult, presenting challenges for global models of ecosystem carbon uptake. Here, we report a close correspondence between seasonally changing foliar pigment levels, expressed as chlorophyll/carotenoid ratios, and evergreen photosynthetic activity, leading to a "chlorophyll/carotenoid index" (CCI) that tracks evergreen photosynthesis at multiple spatial scales. When calculated from NASA's Moderate Resolution Imaging Spectroradiometer satellite sensor, the CCI closely follows the seasonal patterns of daily gross primary productivity of evergreen conifer stands measured by eddy covariance. This discovery provides a way of monitoring evergreen photosynthetic activity from optical remote sensing, and indicates an important regulatory role for carotenoid pigments in evergreen photosynthesis. Improved methods of monitoring photosynthesis from space can improve our understanding of the global carbon budget in a warming world of changing vegetation phenology.

Factors affecting distribution of wood, detritus, and sediment in headwater streams draining managed young-growth red alder - Conifer forests in southeast Alaska

USGS Publications Warehouse

Gomi, T.; Johnson, A.C.; Deal, R.L.; Hennon, P.E.; Orlikowska, E.H.; Wipfli, M.S.

2006-01-01

Factors (riparian stand condition, management regimes, and channel properties) affecting distributions of wood, detritus (leaves and branches), and sediment were examined in headwater streams draining young-growth red alder (Alnus rubra Bong.) - conifer riparian forests (40 years old) remained in channels and provided sites for sediment and organic matter storage. Despite various alder-conifer mixtures and past harvesting effects, the abundance of large wood, fine wood, and detritus accumulations significantly decreased with increasing channel bank-full width (0.5-3.5 m) along relatively short channel distances (up to 700 m). Changes in wood, detritus, and sediment accumulations together with changes in riparian stand characteristics create spatial and temporal variability of in-channel conditions in headwater systems. A component of alder within young-growth riparian forests may benefit both wood production and biological recovery in disturbed headwater stream channels. ?? 2006 NRC.

Hygroscopic motions of fossil conifer cones

NASA Astrophysics Data System (ADS)

Poppinga, Simon; Nestle, Nikolaus; Šandor, Andrea; Reible, Bruno; Masselter, Tom; Bruchmann, Bernd; Speck, Thomas

2017-01-01

Conifer cones represent natural, woody compliant structures which move their scales as passive responses to changes in environmental humidity. Here we report on water-driven opening and closing motions in coalified conifer cones from the Eemian Interglacial (approx. 126,000-113,000 years BP) and from the Middle Miocene (approx. 16.5 to 11.5 million years BP). These cones represent by far the oldest documented evidence of plant parts showing full functionality of such passive hydraulically actuated motion. The functional resilience of these structures is far beyond the biological purpose of seed dispersal and protection and is because of a low level of mineralization of the fossils. Our analysis emphasizes the functional-morphological integrity of these biological compliant mechanisms which, in addition to their biological fascination, are potentially also role models for resilient and maintenance-free biomimetic applications (e.g., adaptive and autonomously moving structures including passive hydraulic actuators).

Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles.

PubMed

Cronn, Richard; Dolan, Peter C; Jogdeo, Sanjuro; Wegrzyn, Jill L; Neale, David B; St Clair, J Bradley; Denver, Dee R

2017-07-24

Perennial growth in plants is the product of interdependent cycles of daily and annual stimuli that induce cycles of growth and dormancy. In conifers, needles are the key perennial organ that integrates daily and seasonal signals from light, temperature, and water availability. To understand the relationship between seasonal cycles and seasonal gene expression responses in conifers, we examined diurnal and circannual needle mRNA accumulation in Douglas-fir (Pseudotsuga menziesii) needles at diurnal and circannual scales. Using mRNA sequencing, we sampled 6.1 × 10 9 reads from 19 trees and constructed a de novo pan-transcriptome reference that includes 173,882 tree-derived transcripts. Using this reference, we mapped RNA-Seq reads from 179 samples that capture daily and annual variation. We identified 12,042 diurnally-cyclic transcripts, 9299 of which showed homology to annotated genes from other plant genomes, including angiosperm core clock genes. Annual analysis revealed 21,225 circannual transcripts, 17,335 of which showed homology to annotated genes from other plant genomes. The timing of maximum gene expression is associated with light intensity at diurnal scales and photoperiod at annual scales, with approximately half of transcripts reaching maximum expression +/- 2 h from sunrise and sunset, and +/- 20 days from winter and summer solstices. Comparisons with published studies from other conifers shows congruent behavior in clock genes with Japanese cedar (Cryptomeria), and a significant preservation of gene expression patterns for 2278 putative orthologs from Douglas-fir during the summer growing season, and 760 putative orthologs from spruce (Picea) during the transition from fall to winter. Our study highlight the extensive diurnal and circannual transcriptome variability demonstrated in conifer needles. At these temporal scales, 29% of expressed transcripts show a significant diurnal cycle, and 58.7% show a significant circannual cycle. Remarkably, thousands of genes reach their annual peak activity during winter dormancy. Our study establishes the fine-scale timing of daily and annual maximum gene expression for diverse needle genes in Douglas-fir, and it highlights the potential for using this information for evaluating hypotheses concerning the daily or seasonal timing of gene activity in temperate-zone conifers, and for identifying cyclic transcriptome components in other conifer species.

Climate signals in a multispecies tree-ring network from central and southern Italy and reconstruction of the late summer temperatures since the early 1700s

NASA Astrophysics Data System (ADS)

Leonelli, Giovanni; Coppola, Anna; Salvatore, Maria Cristina; Baroni, Carlo; Battipaglia, Giovanna; Gentilesca, Tiziana; Ripullone, Francesco; Borghetti, Marco; Conte, Emanuele; Tognetti, Roberto; Marchetti, Marco; Lombardi, Fabio; Brunetti, Michele; Maugeri, Maurizio; Pelfini, Manuela; Cherubini, Paolo; Provenzale, Antonello; Maggi, Valter

2017-11-01

A first assessment of the main climatic drivers that modulate the tree-ring width (RW) and maximum latewood density (MXD) along the Italian Peninsula and northeastern Sicily was performed using 27 forest sites, which include conifers (RW and MXD) and broadleaves (only RW). Tree-ring data were compared using the correlation analysis of the monthly and seasonal variables of temperature, precipitation and standardized precipitation index (SPI, used to characterize meteorological droughts) against each species-specific site chronology and against the highly sensitive to climate (HSTC) chronologies (based on selected indexed individual series). We find that climate signals in conifer MXD are stronger and more stable over time than those in conifer and broadleaf RW. In particular, conifer MXD variability is directly influenced by the late summer (August, September) temperature and is inversely influenced by the summer precipitation and droughts (SPI at a timescale of 3 months). The MXD sensitivity to August-September (AS) temperature and to summer drought is mainly driven by the latitudinal gradient of summer precipitation amounts, with sites in the northern Apennines showing stronger climate signals than sites in the south. Conifer RW is influenced by the temperature and drought of the previous summer, whereas broadleaf RW is more influenced by summer precipitation and drought of the current growing season. The reconstruction of the late summer temperatures for the Italian Peninsula for the past 300 years, based on the HSTC chronology of conifer MXD, shows a stable model performance that underlines periods of climatic cooling (and likely also wetter conditions) in 1699, 1740, 1814, 1914 and 1938, and follows well the variability of the instrumental record and of other tree-ring-based reconstructions in the region. Considering a 20-year low-pass-filtered series, the reconstructed temperature record consistently deviates < 1 °C from the instrumental record. This divergence may also be due to the precipitation patterns and drought stresses that influence the tree-ring MXD at our study sites. The reconstructed late summer temperature variability is also linked to summer drought conditions and it is valid for the west-east oriented region including Sardinia, Sicily, the Italian Peninsula and the western Balkan area along the Adriatic coast.

Fire suppression has led to greater drought-sensitivity in dry conifer forests: tree-ring carbon isotope evidence from Central Oregon

NASA Astrophysics Data System (ADS)

Voelker, S.; Merschel, A. G.; Meinzer, F. C.; Spies, T. A.; Still, C. J.

2016-12-01

Mortality events of economically and ecologically important conifers have been widespread across Western North America over recent decades. Many of these events have been linked to "global change-type droughts" characterized by greater temperatures and evaporative demand. In parallel, since the early to mid- 20th century, increasing atmospheric [CO2] has been shown to increase the water use efficiency (WUE) of trees worldwide while conifer forests in western North America have become denser after the advent of modern fire suppression efforts. Therefore, competing hypotheses include that conifer forests have experienced 1) less drought stress due to water savings from increased WUE, 2) more drought stress due to increased demand for water in dense forests with greater leaf area index, or 3) unchanging stress because these two factors have cancelled each other out. To provide a test of these hypotheses we used inter-annual latewood carbon isotope discrimination, Δ13C, across a dry mixed-conifer forest landscape of central Oregon in the rain shadow of the Cascade Mountains. The forests are dominated by old-growth ponderosa pines (Pinus ponderosa) and younger and fire-intolerant grand firs (Abies grandis). Dendrochronological dating of tree establishment and fires scars established sharp declines in fire frequency and associated increases in the densities of grand fir since the early 1900s. Δ13C data for ponderosa pine and grand fir spanned 1830-2013 and 1900-2013, respectively. For our analyses these years were split into periods of high fire frequency (1830-1900), moderate fire frequency (1901-1956) and fire-exclusion (1957-2013). Comparisons of Δ13C to reconstructed Palmer Drought Severity Index values for the same years revealed that leaf gas exchange of both species has been more sensitive to drought during the recent fire-exclusion period compared to previous periods when surface fires kept tree densities much lower. Similar research is needed elsewhere to provide additional tests. However, this initial evidence suggests that despite CO2-driven increases in WUE, conifer forests in western North America have experienced greater drought stress and been made more susceptible to mortality events due to progressive increases in tree densities and competition for water over the past century.

Gap-based silviculture in a sierran mixed-conifer forest: effects of gap size on early survival and 7-year seedling growth

Treesearch

Robert A. York; John J. Battles; Robert C. Heald

2007-01-01

Experimental canopy gaps ranging in size from 0.1 to 1.0 ha (0.25 to 2.5 acres) were created in a mature mixed conifer forest at Blodgett Forest Research Station, California. Following gap creation, six species were planted in a wagon-wheel design and assessed for survival after two growing seasons. Study trees were measured after seven years to describe the effect of...

Predictions of fire behavior and resistance to control: for use with photo series for the sierra mixed conifer type and the sierra true fir type.

Treesearch

Franklin R. Ward; David V. Sandberg

1981-01-01

This publication presents tables on the behavior of fire and the resistance: of fuels to control. The information is to be used with the photos in the publication, "Photo Series for Quantifying Forest Residues in the Sierra Mixed Conifer Type, Sierra True Fir Type" (Maxwell, Wayne G.; Ward, Franklin R. 1979. Gen. Tech. Rep. PNW-GTR-095. Portland, OR: U.S....

Fire-return intervals in mixed-conifer forests of the Kings River Sustainable Forest Ecosystems Project area

Treesearch

Catherine Phillips

2002-01-01

Fire-return intervals were studied on six 1.4-ha plots in a 2,070-ha study area in the Dinkey Creek watershed. Stumps in mixed-conifer forest were examined for fire scars created from 1771 to 1994, with 1873 chosen as the end of the pre-Euro-American settlement period because the rate of fire events decreased on most plots after about that year. Mean intervals from...

A comprehensive guide to fuel management practices for dry mixed conifer forests in the northwestern United States: Mechanical, chemical, and biological fuel treatment methods

Treesearch

Theresa B. Jain; Mike A. Battaglia; Han-Sup Han; Russell T. Graham; Christopher R. Keyes; Jeremy S. Fried; Jonathan E. Sandquist

2014-01-01

Several mechanical approaches to managing vegetation fuels hold promise when applied to the dry mixed conifer forests in the western United States. These are most useful to treat surface, ladder, and crown fuels. There are a variety of techniques to remove or alter all kinds of plant biomass (live, dead, or decomposed) that affect forest resilience. It is important for...

Electrodeposited Nanolaminated CoNiFe Cores for Ultracompact DC-DC Power Conversion

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, J; Kim, M; Herrault, F

2015-09-01

Laminated metallic alloy cores (i.e., alternating layers of thin film metallic alloy and insulating material) of appropriate lamination thickness enable suppression of eddy current losses at high frequencies. Magnetic cores comprised of many such laminations yield substantial overall magnetic volume, thereby enabling high-power operation. Previously, we reported nanolaminated permalloy (Ni-80 Fe-20) cores based on a sequential electrodeposition technique, demonstrating negligible eddy current losses at peak flux densities up to 0.5 T and operating at megahertz frequencies. This paper demonstrates improved performance of nanolaminated cores comprising tens to hundreds of layers of 300-500-nm-thick CoNiFe films that exhibit superior magnetic properties (e.g.,more » higher saturation flux density and lower coercivity) than permalloy. Nanolaminated CoNiFe cores can be operated up to a peak flux density of 0.9 T, demonstrating improved power handling capacity and exhibiting 30% reduced volumetric core loss, attributed to lowered hysteresis losses compared to the nanolaminated permalloy core of the same geometry. Operating these cores in a buck dc-dc power converter at a switching frequency of 1 MHz, the nanolaminated CoNiFe cores achieved a conversion efficiency exceeding 90% at output power levels up to 7 W, compared to an achieved permalloy core conversion efficiency below 86% at 6 W.« less

Physiological processes during winter dormancy and their ecological significance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Havranek, W.M.; Tranquillini, W.

1995-07-01

Lengthy and severe winters require that trees in the forests of boreal and mountain zones undergo winter dormancy. Physiologically, a high resistance to subfreezing temperatures and concomitant dehydration are necessary. To accomplish this dormancy, both physiological and structural changes are needed at the cellular level that require induction by endogenous and photoperiodic control early in autumn. Endogenous rhythmicity promotes cold hardening in early autumn and the persistence of hardiness throughout the winter. Numerous physiological functions are maintained at a reduced level, or become completely inhibited during true winter dormancy. Winter hardiness also includes the capability to minimize water loss effectivelymore » when water uptake is severely impeded or impossible. Anatomical features such as tracheids act to minimize xylem embolism during frequent freeze-thaw cycles, and {open_quotes}crown{close_quotes} tissues enable buds to stay in a dehydrated and, thus, more resistant state during winter. Both these structural features are adaptations that contribute to the dominance of conifers in cold climates. Interestingly, deciduous tree species rather than evergreen conifers dominate in the most severe winter climates, although it is not clear whether limitations during winter, during the summer growth period, or during both are most limiting to conifer tree ecology. Additional work that evaluates the importance of winter and summer growth restriction, and their interaction, is needed before a comprehensive understanding of conifer tree ecophysiology will be possible.« less

[Vertical distribution and community diversity of butterflies in Yaoluoping National Nature Reserve, Anhui, China].

PubMed

Wang, Song; Bao, Fang-yin; Mei, Bai-mao; Ding, Shi-chao

2009-09-01

By the methods of fixed point, line intercept, and random investigation, the vertical distribution and community diversity of butterflies in Yaoluoping National Nature Reserve were investigated from 2005 to 2008. A total of 3681 specimen were collected, belonging to 111 species, 69 genera, and 10 families, among which, Nymphalidae had the higher species number, individual's number, and diversity index than the other families. The butterflies in the study area were a mixture of Oriental and Palaearetic species, with the Oriental species diminished gradually and the Palaearetic components increased gradually with increasing altitude. Among the three vertical zones ( <800 m, 800-1200 m, and >1200 m in elevation), that of 800-1200 m had the most abundant species of butterflies; and among the six habitat types (deciduous broad-leaved forest, evergreen conifer forest, conifer-broad leaf mixed forest, bush and secondary forest, farmland, and residential area), bush and secondary forest had the higher species number, individual's number, and diversity index of butterflies, while farmland had the lowest diversity index. The similarity coefficient of butterfly species between the habitats was mainly dependent on vegetation type, i.e., the more the difference of vegetation type, the lesser the species similarity coefficient between the habitats, which was the highest (0.61) between conifer-broad leaf mixed forest and bush and secondary forest, and the lowest (0. 20) between evergreen conifer forest and bush and secondary forest.

Disequilibrium of fire-prone forests sets the stage for a rapid decline in conifer dominance during the 21st century.

PubMed

Serra-Diaz, Josep M; Maxwell, Charles; Lucash, Melissa S; Scheller, Robert M; Laflower, Danelle M; Miller, Adam D; Tepley, Alan J; Epstein, Howard E; Anderson-Teixeira, Kristina J; Thompson, Jonathan R

2018-04-30

The impacts of climatic changes on forests may appear gradually on time scales of years to centuries due to the long generation times of trees. Consequently, current forest extent may not reflect current climatic patterns. In contrast with these lagged responses, abrupt transitions in forests under climate change may occur in environments where alternative vegetation states are influenced by disturbances, such as fire. The Klamath forest landscape (northern California and southwest Oregon, USA) is currently dominated by high biomass, biodiverse temperate coniferous forests, but climate change could disrupt the mechanisms promoting forest stability (e.g. growth, regeneration and fire tolerance). Using a landscape simulation model, we estimate that about one-third of the Klamath forest landscape (500,000 ha) could transition from conifer-dominated forest to shrub/hardwood chaparral, triggered by increased fire activity coupled with lower post-fire conifer establishment. Such shifts were widespread under the warmer climate change scenarios (RCP 8.5) but were surprisingly prevalent under the climate of 1949-2010, reflecting the joint influences of recent warming trends and the legacy of fire suppression that may have enhanced conifer dominance. Our results demonstrate that major forest ecosystem shifts should be expected when climate change disrupts key stabilizing feedbacks that maintain the dominance of long-lived, slowly regenerating trees.

Examining Historical and Current Mixed-Severity Fire Regimes in Ponderosa Pine and Mixed-Conifer Forests of Western North America

PubMed Central

Odion, Dennis C.; Hanson, Chad T.; Arsenault, André; Baker, William L.; DellaSala, Dominick A.; Hutto, Richard L.; Klenner, Walt; Moritz, Max A.; Sherriff, Rosemary L.; Veblen, Thomas T.; Williams, Mark A.

2014-01-01

There is widespread concern that fire exclusion has led to an unprecedented threat of uncharacteristically severe fires in ponderosa pine (Pinus ponderosa Dougl. ex. Laws) and mixed-conifer forests of western North America. These extensive montane forests are considered to be adapted to a low/moderate-severity fire regime that maintained stands of relatively old trees. However, there is increasing recognition from landscape-scale assessments that, prior to any significant effects of fire exclusion, fires and forest structure were more variable in these forests. Biota in these forests are also dependent on the resources made available by higher-severity fire. A better understanding of historical fire regimes in the ponderosa pine and mixed-conifer forests of western North America is therefore needed to define reference conditions and help maintain characteristic ecological diversity of these systems. We compiled landscape-scale evidence of historical fire severity patterns in the ponderosa pine and mixed-conifer forests from published literature sources and stand ages available from the Forest Inventory and Analysis program in the USA. The consensus from this evidence is that the traditional reference conditions of low-severity fire regimes are inaccurate for most forests of western North America. Instead, most forests appear to have been characterized by mixed-severity fire that included ecologically significant amounts of weather-driven, high-severity fire. Diverse forests in different stages of succession, with a high proportion in relatively young stages, occurred prior to fire exclusion. Over the past century, successional diversity created by fire decreased. Our findings suggest that ecological management goals that incorporate successional diversity created by fire may support characteristic biodiversity, whereas current attempts to “restore” forests to open, low-severity fire conditions may not align with historical reference conditions in most ponderosa pine and mixed-conifer forests of western North America. PMID:24498383

Irreversible impacts of heat on the emissions of monoterpenes, sesquiterpenes, phenolic BVOC and green leaf volatiles from several tree species

NASA Astrophysics Data System (ADS)

Kleist, E.; Mentel, T. F.; Andres, S.; Bohne, A.; Folkers, A.; Kiendler-Scharr, A.; Rudich, Y.; Springer, M.; Tillmann, R.; Wildt, J.

2012-12-01

Climate change will induce extended heat waves to parts of the vegetation more frequently. High temperatures may act as stress (thermal stress) on plants changing emissions of biogenic volatile organic compounds (BVOCs). As BVOCs impact the atmospheric oxidation cycle and aerosol formation, it is important to explore possible alterations of BVOC emissions under high temperature conditions. Applying heat to European beech, Palestine oak, Scots pine, and Norway spruce in a laboratory setup either caused the well-known exponential increases of BVOC emissions or induced irreversible changes of BVOC emissions. Considering only irreversible changes of BVOC emissions as stress impacts, we found that high temperatures decreased the de novo emissions of monoterpenes, sesquiterpenes and phenolic BVOC. This behaviour was independent of the tree species and whether the de novo emissions were constitutive or induced by biotic stress. In contrast, application of thermal stress to conifers amplified the release of monoterpenes stored in resin ducts of conifers and induced emissions of green leaf volatiles. In particular during insect attack on conifers, the plants showed de novo emissions of sesquiterpenes and phenolic BVOCs, which exceeded constitutive monoterpene emissions from pools. The heat-induced decrease of de novo emissions was larger than the increased monoterpene release caused by damage of resin ducts. For insect-infested conifers the net effect of thermal stress on BVOC emissions could be an overall decrease. Global change-induced heat waves may put hard thermal stress on plants. If so, we project that BVOC emissions increase is more than predicted by models only in areas predominantly covered with conifers that do not emit high amounts of sesquiterpenes and phenolic BVOCs. Otherwise overall effects of high temperature stress will be lower increases of BVOC emissions than predicted by algorithms that do not consider stress impacts.

Responses of tree and insect herbivores to elevated nitrogen inputs: A meta-analysis

NASA Astrophysics Data System (ADS)

Li, Furong; Dudley, Tom L.; Chen, Baoming; Chang, Xiaoyu; Liang, Liyin; Peng, Shaolin

2016-11-01

Increasing atmospheric nitrogen (N) inputs have the potential to alter terrestrial ecosystem function through impacts on plant-herbivore interactions. The goal of our study is to search for a general pattern in responses of tree characteristics important for herbivores and insect herbivorous performance to elevated N inputs. We conducted a meta-analysis based on 109 papers describing impacts of nitrogen inputs on tree characteristics and 16 papers on insect performance. The differences in plant characteristics and insect performance between broadleaves and conifers were also explored. Tree aboveground biomass, leaf biomass and leaf N concentration significantly increased under elevated N inputs. Elevated N inputs had no significantly overall effect on concentrations of phenolic compounds and lignin but adversely affected tannin, as defensive chemicals for insect herbivores. Additionally, the overall effect of insect herbivore performance (including development time, insect biomass, relative growth rate, and so on) was significantly increased by elevated N inputs. According to the inconsistent responses between broadleaves and conifers, broadleaves would be more likely to increase growth by light interception and photosynthesis rather than producing more defensive chemicals to elevated N inputs by comparison with conifers. Moreover, the overall carbohydrate concentration was significantly reduced by 13.12% in broadleaves while increased slightly in conifers. The overall tannin concentration decreased significantly by 39.21% in broadleaves but a 5.8% decrease in conifers was not significant. The results of the analysis indicated that elevated N inputs would provide more food sources and ameliorate tree palatability for insects, while the resistance of trees against their insect herbivores was weakened, especially for broadleaves. Thus, global forest insect pest problems would be aggravated by elevated N inputs. As N inputs continue to rise in the future, forest ecosystem management should pay more attention to insect pest, especially in the regions dominated by broadleaves.

Dispersal limitation drives successional pathways in Central Siberian forests under current and intensified fire regimes.

PubMed

Tautenhahn, Susanne; Lichstein, Jeremy W; Jung, Martin; Kattge, Jens; Bohlman, Stephanie A; Heilmeier, Hermann; Prokushkin, Anatoly; Kahl, Anja; Wirth, Christian

2016-06-01

Fire is a primary driver of boreal forest dynamics. Intensifying fire regimes due to climate change may cause a shift in boreal forest composition toward reduced dominance of conifers and greater abundance of deciduous hardwoods, with potential biogeochemical and biophysical feedbacks to regional and global climate. This shift has already been observed in some North American boreal forests and has been attributed to changes in site conditions. However, it is unknown if the mechanisms controlling fire-induced changes in deciduous hardwood cover are similar among different boreal forests, which differ in the ecological traits of the dominant tree species. To better understand the consequences of intensifying fire regimes in boreal forests, we studied postfire regeneration in five burns in the Central Siberian dark taiga, a vast but poorly studied boreal region. We combined field measurements, dendrochronological analysis, and seed-source maps derived from high-resolution satellite images to quantify the importance of site conditions (e.g., organic layer depth) vs. seed availability in shaping postfire regeneration. We show that dispersal limitation of evergreen conifers was the main factor determining postfire regeneration composition and density. Site conditions had significant but weaker effects. We used information on postfire regeneration to develop a classification scheme for successional pathways, representing the dominance of deciduous hardwoods vs. evergreen conifers at different successional stages. We estimated the spatial distribution of different successional pathways under alternative fire regime scenarios. Under intensified fire regimes, dispersal limitation of evergreen conifers is predicted to become more severe, primarily due to reduced abundance of surviving seed sources within burned areas. Increased dispersal limitation of evergreen conifers, in turn, is predicted to increase the prevalence of successional pathways dominated by deciduous hardwoods. The likely fire-induced shift toward greater deciduous hardwood cover may affect climate-vegetation feedbacks via surface albedo, Bowen ratio, and carbon cycling. © 2015 John Wiley & Sons Ltd.

Examining historical and current mixed-severity fire regimes in ponderosa pine and mixed-conifer forests of western North America.

PubMed

Odion, Dennis C; Hanson, Chad T; Arsenault, André; Baker, William L; Dellasala, Dominick A; Hutto, Richard L; Klenner, Walt; Moritz, Max A; Sherriff, Rosemary L; Veblen, Thomas T; Williams, Mark A

2014-01-01

There is widespread concern that fire exclusion has led to an unprecedented threat of uncharacteristically severe fires in ponderosa pine (Pinus ponderosa Dougl. ex. Laws) and mixed-conifer forests of western North America. These extensive montane forests are considered to be adapted to a low/moderate-severity fire regime that maintained stands of relatively old trees. However, there is increasing recognition from landscape-scale assessments that, prior to any significant effects of fire exclusion, fires and forest structure were more variable in these forests. Biota in these forests are also dependent on the resources made available by higher-severity fire. A better understanding of historical fire regimes in the ponderosa pine and mixed-conifer forests of western North America is therefore needed to define reference conditions and help maintain characteristic ecological diversity of these systems. We compiled landscape-scale evidence of historical fire severity patterns in the ponderosa pine and mixed-conifer forests from published literature sources and stand ages available from the Forest Inventory and Analysis program in the USA. The consensus from this evidence is that the traditional reference conditions of low-severity fire regimes are inaccurate for most forests of western North America. Instead, most forests appear to have been characterized by mixed-severity fire that included ecologically significant amounts of weather-driven, high-severity fire. Diverse forests in different stages of succession, with a high proportion in relatively young stages, occurred prior to fire exclusion. Over the past century, successional diversity created by fire decreased. Our findings suggest that ecological management goals that incorporate successional diversity created by fire may support characteristic biodiversity, whereas current attempts to "restore" forests to open, low-severity fire conditions may not align with historical reference conditions in most ponderosa pine and mixed-conifer forests of western North America.

Climate in the Great Lakes Region between 14,000 and 4000 years ago from isotopic composition of conifer wood

Treesearch

Steven W. Leavitt; Irina P. Panyushkina; Todd Lange; Alex Wiedenhoeft; Li Cheng; R. Douglas Hunter; John Hughes; Frank Pranschke; Allan F. Schneider; Joseph Moran; Ron Stieglitz

2006-01-01

The isotopic composition of ancient wood has the potential to provide information about past environments. We analyzed the ä13C, ä18O, and ä2H of cellulose of conifer trees from several cross-sections at each of 9 sites around the Great Lakes region ranging from ~4000 to 14,000 cal BP. Isotopic values of Picea, Pinus, and Thuja species seem inter-changeable for ä18O...

Post-wildfire logging hinders regeneration and increases fire risk.

PubMed

Donato, D C; Fontaine, J B; Campbell, J L; Robinson, W D; Kauffman, J B; Law, B E

2006-01-20

We present data from a study of early conifer regeneration and fuel loads after the 2002 Biscuit Fire, Oregon, USA, with and without postfire logging. Natural conifer regeneration was abundant after the high-severity fire. Postfire logging reduced median regeneration density by 71%, significantly increased downed woody fuels, and thus increased short-term fire risk. Additional reduction of fuels is necessary for effective mitigation of fire risk. Postfire logging can be counterproductive to the goals of forest regeneration and fuel reduction.

Back to the Future: Building resilience in Colorado Front Range forests using research findings and a new guide for restoration of ponderosa and dry-mixed conifer landscapes

Treesearch

Sue Miller; Rob Addington; Greg Aplet; Mike Battaglia; Tony Cheng; Jonas Feinstein; Jeff Underhill

2018-01-01

Historically, the ponderosa and dry mixed-conifer forests of the Colorado Front Range were more open and grassy, and trees of all size classes were found in a grouped arrangement with sizable openings between the clumps. As a legacy of fire suppression, today’s forests are denser, with smaller trees. Proactive restoration of this forest type will help to reduce fuel...

Estimating canopy bulk density and canopy base height for conifer stands in the interior Western United States using the Forest Vegetation Simulator Fire and Fuels Extension.

Treesearch

Seth Ex; Frederick Smith; Tara Keyser; Stephanie Rebain

2017-01-01

The Forest Vegetation Simulator Fire and Fuels Extension (FFE-FVS) is often used to estimate canopy bulk density (CBD) and canopy base height (CBH), which are key indicators of crown fire hazard for conifer stands in the Western United States. Estimated CBD from FFE-FVS is calculated as the maximum 4 m running mean bulk density of predefined 0.3 m thick canopy layers (...

Using object-based image analysis to conduct high-resolution conifer extraction at regional spatial scales

USGS Publications Warehouse

Coates, Peter S.; Gustafson, K. Benjamin; Roth, Cali L.; Chenaille, Michael P.; Ricca, Mark A.; Mauch, Kimberly; Sanchez-Chopitea, Erika; Kroger, Travis J.; Perry, William M.; Casazza, Michael L.

2017-08-10

The distribution and abundance of pinyon (Pinus monophylla) and juniper (Juniperus osteosperma, J. occidentalis) trees (hereinafter, "pinyon-juniper") in sagebrush (Artemisia spp.) ecosystems of the Great Basin in the Western United States has increased substantially since the late 1800s. Distributional expansion and infill of pinyon-juniper into sagebrush ecosystems threatens the ecological function and economic viability of these ecosystems within the Great Basin, and is now a major contemporary challenge facing land and wildlife managers. Particularly, pinyon-juniper encroachment into intact sagebrush ecosystems has been identified as a primary threat facing populations of greater sage-grouse (Centrocercus urophasianus; hereinafter, "sage-grouse"), which is a sagebrush obligate species. Even seemingly innocuous scatterings of isolated pinyon-juniper in an otherwise intact sagebrush landscape can negatively affect survival and reproduction of sage-grouse. Therefore, accurate and high-resolution maps of pinyon-juniper distribution and abundance (indexed by canopy cover) across broad geographic extents would help guide land management decisions that better target areas for pinyon-juniper removal projects (for example, fuel reduction, habitat improvement for sage-grouse, and other sagebrush species) and facilitate science that further quantifies ecological effects of pinyon-juniper encroachment on sage-grouse populations and sagebrush ecosystem processes. Hence, we mapped pinyon-juniper (referred to as conifers for actual mapping) at a 1 × 1-meter (m) high resolution across the entire range of previously mapped sage-grouse habitat in Nevada and northeastern California.We used digital orthophoto quad tiles from National Agriculture Imagery Program (2010, 2013) as base imagery, and then classified conifers using automated feature extraction methodology with the program Feature Analyst™. This method relies on machine learning algorithms that extract features from imagery based on their spectral and spatial signatures. We classified conifers in 6,230 tiles and then tested for errors of omission and commission using confusion matrices. Accuracy ranged from 79.1 to 96.8, with an overall accuracy of 84.3 percent across all mapped areas. An estimated accuracy coefficient (kappa) indicated substantial to nearly perfect agreement, which varied across mapped areas. For this mapping process across the entire mapping extent, four sets of products are available at https://doi.org/10.5066/F7348HVC, including (1) a shapefile representing accuracy results linked to mapping subunits; (2) binary rasters representing conifer presence or absence at a 1 × 1 m resolution; (3) a 30 × 30 m resolution raster representing percentages of conifer canopy cover within each cell from 0 to 100; and (4) 1 × 1 m resolution canopy cover classification rasters derived from a 50-m-radius moving window analysis. The latter two products can be reclassified in a geographic information system (GIS) into user-specified bins to meet different objectives, which include approximations for phases of encroachment. These products complement, and in some cases improve upon, existing conifer maps in the Western United States, and will help facilitate sage-grouse habitat management and sagebrush ecosystem restoration.

Remote sensing of fire severity: linking post-fire reflectance data with physiological responses in two western conifer species

NASA Astrophysics Data System (ADS)

Sparks, A. M.; Smith, A. M.; Kolden, C.; Apostol, K. G.; Boschetti, L.

2014-12-01

Fire is a common disturbance in forested ecosystems in the western U.S. and can be responsible for long-term impacts on vegetation and soil. An improved understanding of how ecosystems recover after fire is necessary so that land managers can plan for and mitigate the effects of these disturbances. Although several studies have attempted to link fire intensity with severity, direct links between spectral indices of severity and key physiological changes in vegetation are not well understood. We conducted an assessment of how two western conifer species respond to four fire radiative energy treatments, with spectra acquired pre- and up to a month post-burn. After transforming the spectral data into Landsat 8 equivalent reflectance, burn severity indices commonly used in the remote sensing community were compared to concurrent physiological measurements including gas exchange and photosynthetic rate. Preliminary results indicate significant relationships between several fire severity indices and physiological responses measured in the conifer seedlings.

Satellite change detection of forest damage near the Chernobyl accident

DOE Office of Scientific and Technical Information (OSTI.GOV)

McClellan, G.E.; Anno, G.H.

1992-01-01

A substantial amount of forest within a few kilometers of the Chernobyl nuclear reactor station was badly contaminated with radionuclides by the April 26, 1986, explosion and ensuing fire at reactor No. 4. Radiation doses to conifers in some areas were sufficient to cause discoloration of needles within a few weeks. Other areas, receiving smaller doses, showed foliage changes beginning 6 months to a year later. Multispectral imagery available from Landsat sensors is especially suited for monitoring such changes in vegetation. A series of Landsat Thematic Mapper images was developed that span the 2 yr following the accident. Quantitative dosemore » estimation for the exposed conifers requires an objective change detection algorithm and knowledge of the dose-time response of conifers to ionizing radiation. Pacific-Sierra Research Corporation's Hyperscout{trademark} algorithm is based on an advanced, sensitive technique for change detection particularly suited for multispectral images. The Hyperscout algorithm has been used to assess radiation damage to the forested areas around the Chernobyl nuclear power plant.« less

In situ fossil seedlings of a Metasequoia-like taxodiaceous conifer from Paleocene river floodplain deposits of central Alberta, Canada.

PubMed

Falder, A B; Stockey, R A; Rothwell, G W

1999-06-01

Fossil seeds and seedlings of a Metasequoia-like taxodiaceous conifer occur in Paleocene deposits at the Munce's Hill and Gao Mine localities of central Alberta, Canada. Compression/impression specimens are preserved in upright growth positions among seedlings of the cercidiphyllaceous dicot Joffrea speirsii Crane & Stockey. There are a large number of seeds, a few of which were buried while germinating and show a radicle or short primary root. More than 500 Metasequoia-like seedlings have been identified that have two linear cotyledons with parallel margins and rounded tips. Three specimens have been found that display three cotyledons. Slightly older seedlings show decussate pairs of leaves attached to the stem distal to the cotyledons. Still older seedlings have axillary branches that show varying sizes and numbers of opposite leaves arranged in a single plane distal to the opposite pairs. These specimens reveal that both Joffrea and this extinct taxodiaceous conifer were early colonizers of North American floodplain communities at the beginning of the Tertiary.

A taxonomic monograph of Nearctic Scolytus Geoffroy (Coleoptera, Curculionidae, Scolytinae).

PubMed

Smith, Sarah M; Cognato, Anthony I

2014-01-01

The Nearctic bark beetle genus Scolytus Geoffroy was revised based in part on a molecular and morphological phylogeny. Monophyly of the native species was tested using mitochondrial (COI) and nuclear (28S, CAD, ArgK) genes and 43 morphological characters in parsimony and Bayesian phylogenetic analyses. Parsimony analyses of molecular and combined datasets provided mixed results while Bayesian analysis recovered most nodes with posterior probabilities >90%. Native hardwood- and conifer-feeding Scolytus species were recovered as paraphyletic. Native Nearctic species were recovered as paraphyletic with hardwood-feeding species sister to Palearctic hardwood-feeding species rather than to native conifer-feeding species. The Nearctic conifer-feeding species were monophyletic. Twenty-five species were recognized. Four new synonyms were discovered: Scolytuspraeceps LeConte, 1868 (= Scolytusabietis Blackman, 1934; = Scolytusopacus Blackman, 1934), Scolytusreflexus Blackman, 1934 (= Scolytusvirgatus Bright, 1972; = Scolytuswickhami Blackman, 1934). Two species were reinstated: Scolytusfiskei Blackman, 1934 and Scolytussilvaticus Bright, 1972. A diagnosis, description, distribution, host records and images were provided for each species and a key is presented to all species.

Identification and characterization of the WRKY transcription factor family in Pinus monticola.

PubMed

Liu, Jun-Jun; Ekramoddoullah, Abul K M

2009-01-01

The WRKY gene family represents an ancient and highly complex group of transcription factors involved in signal transduction pathways of numerous plant developmental processes and host defense response. Up to now, most WRKY proteins have been identified in a few angiosperm species. Identification of WRKY genes in a conifer species would facilitate a comprehensive understanding of the evolutionary and function-adaptive process of this superfamily in plants. We performed PCR on genomic DNA to clone WRKY sequences from western white pine (Pinus monticola), one of the most valuable conifer species endangered by white pine blister rust (Cronartium ribicola). In total, 83 P. monticola WRKY (PmWRKY) sequences were identified using degenerate primers targeted to the WRKY domain. A phylogenetic analysis revealed that PmWRKY members fell into four major groups (1, 2a+2b, 2c, and 2d+2e) described in Arabidopsis and rice. Because of high genetic diversity of the PmWRKY family, a modified AFLP method was used to detect DNA polymorphism of this gene family. Polymorphic fragments accounted for 17%-35% of total PCR products in the AFLP profiles. Among them, one WRKY AFLP marker was linked to the major resistance gene (Cr2) against C. ribicola. The results of this study provide basic genomic information for a conifer WRKY gene family, which will pave the way for elucidating gene evolutionary mechanisms in plants and unveiling the precise roles of PmWRKY in conifer development and defense response.

Impact of heat stress on the emissions of monoterpenes, sesquiterpenes, phenolic BVOC and green leaf volatiles from several tree species

NASA Astrophysics Data System (ADS)

Kleist, E.; Mentel, T. F.; Andres, S.; Bohne, A.; Folkers, A.; Kiendler-Scharr, A.; Rudich, Y.; Springer, M.; Tillmann, R.; Wildt, J.

2012-07-01

Changes in the biogenic volatile organic compound (BVOC) emissions from European beech, Palestine oak, Scots pine, and Norway spruce exposed to heat stress were measured in a laboratory setup. In general, heat stress decreased the de novo emissions of monoterpenes, sesquiterpenes and phenolic BVOC. Decreasing emission strength with heat stress was independent of the tree species and whether the de novo emissions being constitutive or induced by biotic stress. In contrast, heat stress induced emissions of green leaf volatiles. It also amplified the release of monoterpenes stored in resin ducts of conifers probably due to heat-induced damage of these resin ducts. The increased release of monoterpenes could be strong and long lasting. But, despite of such strong monoterpene emission pulses, the net effect of heat stress on BVOC emissions from conifers can be an overall decrease. In particular during insect attack on conifers the plants showed de novo emissions of sesquiterpenes and phenolic BVOC which exceeded constitutive monoterpene emissions from pools. The heat stress induced decrease of these de novo emissions was larger than the increased release caused by damage of resin ducts. We project that global change induced heat waves may cause increased BVOC emissions only in cases where the respective areas are predominantly covered with conifers that do not emit high amounts of sesquiterpenes and phenolic BVOC. Otherwise the overall effect of heat stress will be a decrease in BVOC emissions.

Drought stress alters the concentration of wood terpenoids in Scots pine and Norway spruce seedlings.

PubMed

Turtola, Satu; Manninen, Anne-Marja; Rikala, Risto; Kainulainen, Pirjo

2003-09-01

Drought is known to have an impact on the resistance of conifers to various pests, for example, by affecting resin flow in trees. Little is known, however, about the quantitative and qualitative changes in resin when trees are growing in low moisture conditions. We exposed Scots pine (Pinus sylvestris L.) and Norway spruce (Picea abies (L.) Karst.) seedlings to medium and severe drought stress for two growing seasons and analyzed the monoterpenes and resin acids in the main stem wood after two years of treatment. In addition to secondary chemistry, we measured the level of nutrients in the needles and the growth response of seedlings. After the first year of treatment, drought stress did not affect the growth of seedlings, but in the second year, shoot growth was retarded, especially in Scots pine. In both conifer species, severe drought increased the concentrations of several individual monoterpenes and resin acids. Total monoterpenes and resin acids were 39 and 32% higher in severe drought-treated Scots pine seedlings than in the controls, and 35 and 45% higher in Norway spruce seedlings. In Scots pine needles, the concentrations of nitrogen and phosphorus increased, while magnesium and calcium decreased compared to controls. In Norway spruce needles, nutrient concentrations were not affected. The results suggest that drought stress substantially affects both the growth of conifers and the chemical quality of the wood. We discuss the potential trade-off in growth and defense of small conifer seedlings.

The gibberellin GID1-DELLA signalling module exists in evolutionarily ancient conifers.

PubMed

Du, Ran; Niu, Shihui; Liu, Yang; Sun, Xinrui; Porth, Ilga; El-Kassaby, Yousry A; Li, Wei

2017-11-30

Gibberellins (GAs) participate in controlling various aspects of basic plant growth responses. With the exception of bryophytes, GA signalling in land plants, such as lycophytes, ferns and angiosperms, is mediated via GIBBERELLIN-INSENSITIVE DWARF1 (GID1) and DELLA proteins. To explore whether this GID1-DELLA mechanism is present in pines, we cloned an orthologue (PtGID1) of Arabidopsis AtGID1a and two putative DELLA proteins (PtDPL; PtRGA) from Pinus tabuliformis, a widespread indigenous conifer species in China, and studied their recombinant proteins. PtGID1 shares with AtGID1a the conserved HSL motifs for GA binding and an N-terminal feature that are essential for interaction with DELLA proteins. Indeed, A. thaliana 35S:PtGID1 overexpressors showed a strong GA-hypersensitive phenotype compared to the wild type. Interactions between PtGID1 and PtDELLAs, but also interactions between the conifer-angiosperm counterparts (i.e. between AtGID1 and PtDELLAs and between PtGID1 and AtDELLA), were detected in vivo. This demonstrates that pine has functional GID1-DELLA components. The Δ17-domains within PtDPL and PtRGA were identified as potential interaction sites within PtDELLAs. Our results show that PtGID1 has the ability to interact with DELLA and functions as a GA receptor. Thus, a GA-GID1-DELLA signalling module also operates in evolutionarily ancient conifers.

Using historical ecology to reassess the conservation status of coniferous forests in Central Europe.

PubMed

Szabó, Péter; Kuneš, Petr; Svobodová-Svitavská, Helena; Švarcová, Markéta Gabriela; Křížová, Lucie; Suchánková, Silvie; Müllerová, Jana; Hédl, Radim

2017-02-01

Forests cover approximately one-third of Central Europe. Oak (Quercus) and European beech (Fagus sylvatica) are considered the natural dominants at low and middle elevations, respectively. Many coniferous forests (especially of Picea abies) occur primarily at midelevations, but these are thought to have resulted from forestry plantations planted over the past 200 years. Nature conservation and forestry policy seek to promote broadleaved trees over conifers. However, there are discrepancies between conservation guidelines (included in Natura 2000) and historical and palaeoecological data with regard to the distribution of conifers. Our aim was to bring new evidence to the debate on the conservation of conifers versus broadleaved trees at midelevations in Central Europe. We created a vegetation and land-cover model based on pollen data for a highland area of 11,300 km 2 in the Czech Republic and assessed tree species composition in the forests before the onset of modern forestry based on 18th-century archival sources. Conifers dominated the study region throughout the entire Holocene (approximately 40-60% of the area). Broadleaved trees were present in a much smaller area than envisaged by current ideas of natural vegetation. Rather than casting doubt on the principles of Central European nature conservation in general, our results highlight the necessity of detailed regional investigations and the importance of historical data in challenging established notions on the natural distribution of tree species. © 2016 Society for Conservation Biology.

New insights into the mechanisms of water-stress-induced cavitation in conifers.

PubMed

Cochard, Hervé; Hölttä, Teemu; Herbette, Stéphane; Delzon, Sylvain; Mencuccini, Maurizio

2009-10-01

Cavitation resistance is a key parameter to understand tree drought tolerance but little is known about the mechanisms of air entry into xylem conduits. For conifers three mechanisms have been proposed: (1) a rupture of pit margo microfibrils, (2) a displacement of the pit torus from its normal sealing position over the pit aperture, and (3) a rupture of an air-water menisci in a pore of the pit margo. In this article, we report experimental results on three coniferous species suggesting additional mechanisms. First, when xylem segments were injected with a fluid at a pressure sufficient to aspirate pit tori and well above the pressure for cavitation induction we failed to detect the increase in sample conductance that should have been caused by torus displacement from blocking the pit aperture or by membrane rupture. Second, by injecting xylem samples with different surfactant solutions, we found a linear relation between sample vulnerability to cavitation and fluid surface tension. This suggests that cavitation in conifers could also be provoked by the capillary failure of an air-water meniscus in coherence with the prediction of Young-Laplace's equation. Within the bordered pit membrane, the exact position of this capillary seeding is unknown. The possible Achilles' heel could be the seal between tori and pit walls or holes in the torus. The mechanism of water-stress-induced cavitation in conifers could then be relatively similar to the one currently proposed for angiosperms.

The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200 MY of evolution.

PubMed

Zuccolo, Andrea; Scofield, Douglas G; De Paoli, Emanuele; Morgante, Michele

2015-08-15

Long Terminal Repeat retroelements (LTR-RTs) are a major component of many plant genomes. Although well studied and described in angiosperms, their features and dynamics are poorly understood in gymnosperms. Representative complete copies of a Ty1-copia element isolate in Picea abies and named PARTC were identified in six other conifer species (Picea glauca, Pinus sylvestris, Pinus taeda, Abies sibirica, Taxus baccata and Juniperus communis) covering more than 200 million years of evolution. Here we characterized the structure of this element, assessed its abundance across conifers, studied the modes and timing of its amplification, and evaluated the degree of conservation of its extant copies at nucleotide level over distant species. We demonstrated that the element is ancient, abundant, widespread and its paralogous copies are present in the genera Picea, Pinus and Abies as an LTR-RT family. The amplification leading to the extant copies of PARTC occurred over long evolutionary times spanning 10s of MY and mostly took place after the speciation of the conifers analyzed. The level of conservation of PARTC is striking and may be explained by low substitution rates and limited removal mechanisms for LTR-RTs. These PARTC features and dynamics are representative of a more general scenario for LTR-RTs in gymnosperms quite different from that characterizing the vast majority of LTR-RT elements in angiosperms. Copyright © 2015 Elsevier B.V. All rights reserved.

An Ancient Transkingdom Horizontal Transfer of Penelope-Like Retroelements from Arthropods to Conifers

PubMed Central

Lin, Xuan; Faridi, Nurul; Casola, Claudio

2016-01-01

Comparative genomics analyses empowered by the wealth of sequenced genomes have revealed numerous instances of horizontal DNA transfers between distantly related species. In eukaryotes, repetitive DNA sequences known as transposable elements (TEs) are especially prone to move across species boundaries. Such horizontal transposon transfers, or HTTs, are relatively common within major eukaryotic kingdoms, including animals, plants, and fungi, while rarely occurring across these kingdoms. Here, we describe the first case of HTT from animals to plants, involving TEs known as Penelope-like elements, or PLEs, a group of retrotransposons closely related to eukaryotic telomerases. Using a combination of in situ hybridization on chromosomes, polymerase chain reaction experiments, and computational analyses we show that the predominant PLE lineage, EN(+)PLEs, is highly diversified in loblolly pine and other conifers, but appears to be absent in other gymnosperms. Phylogenetic analyses of both protein and DNA sequences reveal that conifers EN(+)PLEs, or Dryads, form a monophyletic group clustering within a clade of primarily arthropod elements. Additionally, no EN(+)PLEs were detected in 1,928 genome assemblies from 1,029 nonmetazoan and nonconifer genomes from 14 major eukaryotic lineages. These findings indicate that Dryads emerged following an ancient horizontal transfer of EN(+)PLEs from arthropods to a common ancestor of conifers approximately 340 Ma. This represents one of the oldest known interspecific transmissions of TEs, and the most conspicuous case of DNA transfer between animals and plants. PMID:27190138

Growth response of conifers in Adirondack plantations to changing environment: Model approaches based on stem-analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pan, Y.

1993-01-01

Based on model approaches, three conifer species, red pine, Norway spruce and Scots pine grown in plantations at Pack Demonstration Forest, in the southeastern Adirondack mountains of New York, were chosen to study growth response to different environmental changes, including silvicultural treatments and changes in climate and chemical environment. Detailed stem analysis data provided a basis for constructing tree growth models. These models were organized into three groups: morphological, dynamic and predictive. The morphological model was designed to evaluate relationship between tree attributes and interactive influences of intrinsic and extrinsic factors on the annual increments. Three types of morphological patternsmore » have been characterized: space-time patterns of whole-stem rings, intrinsic wood deposition pattern along the tree-stem, and bolewood allocation ratio patterns along the tree-stem. The dynamic model reflects the growth process as a system which responds to extrinsic signal inputs, including fertilization pulses, spacing effects and climatic disturbance, as well as intrinsic feedback. Growth signals indicative of climatic effects were used to construct growth-climate models using both multivariate analysis and Kalman filter methods. The predictive model utilized GCMs and growth-climate relationships to forecast tree growth responses in relation to future scenarios of CO[sub 2]-induced climate change. Prediction results indicate that different conifer species have individualistic growth response to future climatic change and suggest possible changes in future growth and distribution of naturally occurring conifers in this region.« less

A comparative study of modern and fossil cone scales and seeds of conifers: A geochemical approach

USGS Publications Warehouse

Artur, Stankiewicz B.; Mastalerz, Maria; Kruge, M.A.; Van Bergen, P. F.; Sadowska, A.

1997-01-01

Modern cone scales and seeds of Pinus strobus and Sequoia sempervirens, and their fossil (Upper Miocene, c. 6 Mar) counterparts Pinus leitzii and Sequoia langsdorfi have been studied using pyrolysis-gas chromatography/mass spectrometry (Py-GC/MS), electron-microprobe and scanning electron microscopy. Microscopic observations revealed only minor microbial activity and high-quality structural preservation of the fossil material. The pyrolysates of both modern genera showed the presence of ligno-cellulose characteristic of conifers. However, the abundance of (alkylated)phenols and 1,2-benzenediols in modern S. sempervirens suggests the presence of non-hydrolysable tannins or abundant polyphenolic moieties not previously reported in modern conifers. The marked differences between the pyrolysis products of both modern genera are suggested to be of chemosystematic significance. The fossil samples also contained ligno-cellulose which exhibited only partial degradation, primarily of the carbohydrate constituents. Comparison between the fossil cone scale and seed pyrolysates indicated that the ligno-cellulose complex present in the seeds is chemically more resistant than that in the cone scales. Principal component analysis (PCA) of the pyrolysis data allowed for the determination of the discriminant functions used to assess the extent of degradation and the chemosystematic differences between both genera and between cone scales and seeds. Elemental composition (C, O, S), obtained using electron-microprobe, corroborated the pyrolysis results. Overall, the combination of chemical, microscopic and statistical methods allowed for a detailed characterization and chemosystematic interpretations of modern and fossil conifer cone scales and seeds.

Bird Communities and Environmental Correlates in Southern Oregon and Northern California, USA.

PubMed

Stephens, Jaime L; Dinger, Eric C; Alexander, John D; Mohren, Sean R; Ralph, C John; Sarr, Daniel A

2016-01-01

We examined avian community ecology in the Klamath Ecoregion and determined that individual bird species co-exist spatially to form 29 statistically distinguishable bird groups. We identified climate, geography, and vegetation metrics that are correlated with these 29 bird groups at three scales: Klamath Ecoregion, vegetation formation (agriculture, conifer, mixed conifer/hardwood, shrubland), and National Park Service unit. Two climate variables (breeding season mean temperature and temperature range) and one geography variable (elevation) were correlated at all scales, suggesting that for some vegetation formations and park units there is sufficient variation in climate and geography to be an important driver of bird communities, a level of variation we expected only at the broader scale. We found vegetation to be important at all scales, with coarse metrics (environmental site potential and existing vegetation formation) meaningful across all scales and structural vegetation patterns (e.g. succession, disturbance) important only at the scale of vegetation formation or park unit. Additionally, we examined how well six National Park Service units represent bird communities in the broader Klamath Ecoregion. Park units are inclusive of most bird communities with the exception of the oak woodland community; mature conifer forests are well represented, primarily associated with conifer canopy and lacking multi-layered structure. Identifying environmental factors that shape bird communities at three scales within this region is important; such insights can inform local and regional land management decisions necessary to ensure bird conservation in this globally significant region.

Bird Communities and Environmental Correlates in Southern Oregon and Northern California, USA

PubMed Central

Dinger, Eric C.; Alexander, John D.; Mohren, Sean R.; Ralph, C. John; Sarr, Daniel A.

2016-01-01

We examined avian community ecology in the Klamath Ecoregion and determined that individual bird species co-exist spatially to form 29 statistically distinguishable bird groups. We identified climate, geography, and vegetation metrics that are correlated with these 29 bird groups at three scales: Klamath Ecoregion, vegetation formation (agriculture, conifer, mixed conifer/hardwood, shrubland), and National Park Service unit. Two climate variables (breeding season mean temperature and temperature range) and one geography variable (elevation) were correlated at all scales, suggesting that for some vegetation formations and park units there is sufficient variation in climate and geography to be an important driver of bird communities, a level of variation we expected only at the broader scale. We found vegetation to be important at all scales, with coarse metrics (environmental site potential and existing vegetation formation) meaningful across all scales and structural vegetation patterns (e.g. succession, disturbance) important only at the scale of vegetation formation or park unit. Additionally, we examined how well six National Park Service units represent bird communities in the broader Klamath Ecoregion. Park units are inclusive of most bird communities with the exception of the oak woodland community; mature conifer forests are well represented, primarily associated with conifer canopy and lacking multi-layered structure. Identifying environmental factors that shape bird communities at three scales within this region is important; such insights can inform local and regional land management decisions necessary to ensure bird conservation in this globally significant region. PMID:27732625

The Complete Chloroplast Genome Sequence of a Relict Conifer Glyptostrobus pensilis: Comparative Analysis and Insights into Dynamics of Chloroplast Genome Rearrangement in Cupressophytes and Pinaceae

PubMed Central

Zheng, Renhua; Xu, Haibin; Zhou, Yanwei; Li, Meiping; Lu, Fengjuan; Dong, Yini; Liu, Xin; Chen, Jinhui; Shi, Jisen

2016-01-01

Glyptostrobus pensilis, belonging to the monotypic genus Glyptostrobus (Family: Cupressaceae), is an ancient conifer that is naturally distributed in low-lying wet areas. Here, we report the complete chloroplast (cp) genome sequence (132,239 bp) of G. pensilis. The G. pensilis cp genome is similar in gene content, organization and genome structure to the sequenced cp genomes from other cupressophytes, especially with respect to the loss of the inverted repeat region A (IRA). Through phylogenetic analysis, we demonstrated that the genus Glyptostrobus is closely related to the genus Cryptomeria, supporting previous findings based on physiological characteristics. Since IRs play an important role in stabilize cp genome and conifer cp genomes lost different IR regions after splitting in two clades (cupressophytes and Pinaceae), we performed cp genome rearrangement analysis and found more extensive cp genome rearrangements among the species of cupressophytes relative to Pinaceae. Additional repeat analysis indicated that cupressophytes cp genomes contained less potential functional repeats, especially in Cupressaceae, compared with Pinaceae. These results suggested that dynamics of cp genome rearrangement in conifers differed since the two clades, Pinaceae and cupressophytes, lost IR copies independently and developed different repeats to complement the residual IRs. In addition, we identified 170 perfect simple sequence repeats that will be useful in future research focusing on the evolution of genetic diversity and conservation of genetic variation for this endangered species in the wild. PMID:27560965

Fire regimes of quaking aspen in the Mountain West

USGS Publications Warehouse

Shinneman, Douglas J.; Baker, William L.; Rogers, Paul C.; Kulakowski, Dominik

2013-01-01

Quaking aspen (Populus tremuloides Michx.) is the most widespread tree species in North America, and it is found throughout much of the Mountain West (MW) across a broad range of bioclimatic regions. Aspen typically regenerates asexually and prolifically after fire, and due to its seral status in many western conifer forests, aspen is often considered dependent upon disturbance for persistence. In many landscapes, historical evidence for post-fire aspen establishment is clear, and following extended fire-free periods senescing or declining aspen overstories sometimes lack adequate regeneration and are succeeding to conifers. However, aspen also forms relatively stable stands that contain little or no evidence of historical fire. In fact, aspen woodlands range from highly fire-dependent, seral communities to relatively stable, self-replacing, non-seral communities that do not require fire for persistence. Given the broad geographic distribution of aspen, fire regimes in these forests likely co-vary spatially with changing community composition, landscape setting, and climate, and temporally with land use and climate – but relatively few studies have explicitly focused on these important spatiotemporal variations. Here we reviewed the literature to summarize aspen fire regimes in the western US and highlight knowledge gaps. We found that only about one-fourth of the 46 research papers assessed for this review could be considered fire history studies (in which mean fire intervals were calculated), and all but one of these were based primarily on data from fire-scarred conifers. Nearly half of the studies reported at least some evidence of persistent aspen in the absence of fire. We also found that large portions of the MW have had little or no aspen fire history research. As a result of this review, we put forth a classification framework for aspen that is defined by key fire regime parameters (fire severity and probability), and that reflects underlying biophysical settings and correlated aspen functional types. We propose the following aspen fire regime types: (1) fire-independent, stable aspen; (2) fire-influenced, stable aspen; (3) fire-dependent, seral, conifer-aspen mix; (4) fire-dependent, seral, montane aspen-conifer; and (5) fire-dependent, seral, subalpine aspen-conifer. Closing research gaps and validating our proposed aspen fire regime classification will likely require additional site-specific research, enhanced dendrochronology techniques, charcoal and pollen record analysis, spatially-explicit modeling, and other techniques. We hope to encourage development of site-appropriate disturbance ecology characterizations, in order to aid efforts to manage and restore aspen communities and to diagnose key factors contributing to changes in aspen.

Fluctuations in the East Asian monsoon recorded by pollen assemblages in sediments from the Japan Sea off the southwestern coast of Hokkaido, Japan, from 4.3 Ma to the present

NASA Astrophysics Data System (ADS)

Igarashi, Yaeko; Irino, Tomohisa; Sawada, Ken; Song, Lu; Furota, Satoshi

2018-04-01

We reconstructed fluctuations in the East Asian monsoon and vegetation in the Japan Sea region since the middle Pliocene based on pollen data obtained from sediments collected by the Integrated Ocean Drilling Program off the southwestern coast of northern Japan. Taxodiaceae conifers Metasequoia and Cryptomeria and Sciadopityacere conifer Sciadopitys are excellent indicators of a humid climate during the monsoon. The pollen temperature index (Tp) can be used as a proxy for relative air temperature. Based on changes in vegetation and reconstructed climate over a period of 4.3 Ma, we classified the sediment sequence into six pollen zones. From 4.3 to 3.8 Ma (Zone 1), the climate fluctuated between cool/moist and warm/moist climatic conditions. Vegetation changed between warm temperate mixed forest and cool temperate conifer forest. The Neogene type tree Carya recovered under a warm/moist climate. The period from 3.8 to 2.5 Ma (Zone 2) was characterized by increased Metasequoia pollen concentration. Warm temperate mixed forest vegetation developed under a cool/moist climate. The period from 2.5 to 2.2 Ma (Zone 3) was characterized by an abrupt increase in Metasequoia and/or Cryptomeria pollen and a decrease in warm broadleaf tree pollen, indicating a cool/humid climate. The Zone 4 period (2.2-1.7 Ma) was characterized by a decrease in Metasequoia and/or Cryptomeria pollen and an increase in cool temperate conifer Picea and Tsuga pollen, indicating a cool/moist climate. The period from 1.7 to 0.3 Ma (Zone 5) was characterized by orbital-scale climate fluctuations. Cycles of abrupt increases and decreases in Cryptomeria and Picea pollen and in Tp values indicated changes between warm/humid and cold/dry climates. The alpine fern Selaginella selaginoides appeared as of 1.6 Ma. Vegetation alternated among warm mixed, cool mixed, and cool temperate conifer forests. Zone 6 (0.3 Ma to present) was characterized by a decrease in Cryptomeria pollen. The warm temperate broadleaf forest and cool temperate conifer forest developed alternately under warm/moist and cold/dry climate. Zone 2 corresponded to a weak Tsushima Current breaking through the Tsushima Strait, and the beginning of orbital-scale climatic changes at 1.7 Ma during Zone 5 corresponded to the strong inflow of the Tsushima Current into the Japan Sea during interglacial periods (Gallagher et al., 2015).

Oviposition strategies of conifer seed chalcids in relation to host phenology.

PubMed

Rouault, Gaëlle; Turgeon, Jean; Candau, Jean-Noël; Roques, Alain; von Aderkas, Patrick

2004-10-01

Insects are considered the most important predators of seed cones, the female reproductive structures of conifers, prior to seed dispersal. Slightly more than 100 genera of insects are known to parasitize conifer seed cones. The most diverse (i.e., number of species) of these genera is Megastigmus (Hymenoptera: Torymidae), which comprises many important seed pests of native and exotic conifers. Seed chalcids, Megastigmus spp., lay eggs inside the developing ovules of host conifers and, until recently, oviposition was believed to occur only in fertilized ovules. Ovule development begins just after pollination, but stops if cells are not fertilized. The morphological stage of cone development at the time of oviposition by seed chalcids has been established for many species; however, knowledge of ovule development at that time has been documented for only one species, M. spermotrophus. Megastigmus spermotrophus oviposits in Douglas-fir ovules after pollination but before fertilization. Unlike the unfertilized ovules, those containing a M. spermotrophus larva continue to develop, whether fertilized or not, stressing the need to broaden our understanding of the insect-plant interactions for this entire genus. To achieve this task, we reviewed the scientific literature and assembled information pertaining to the timing of oviposition and to the pollination and fertilization periods of their respective host(s). More specifically, we were searching for circumstantial evidence that other species of Megastigmus associated with conifers could behave (i.e., oviposit before ovule fertilization) and impact on female gametophyte (i.e., prevent abortion) like M. spermotrophus. The evidence from our compilation suggests that seed chalcids infesting Pinaceae may also oviposit before ovule fertilization, just like M. spermotrophus, whereas those infesting Cupressaceae seemingly oviposit after ovule fertilization. Based on this evidence, we hypothesize that all species of Megastigmus associated with Pinaceae can oviposit in unfertilized ovules, whereas those exploiting Cupressaceae cannot, and thus oviposit only in already fully developed fertilized seeds. Furthermore, we predict that the presence of a larva in unfertilized ovules of all Pinaceae will influence the development of the female gametophyte by preventing its abortion. This influence on the Pinaceae can be interpreted as an ability to parasitize any of the potential seeds present in a seed cone, and as such represents a much more efficient oviposition strategy than searching and locating only fertilized seeds. Concomitantly, this ability has likely led to an overestimation of the impact of the species of seed chalcid infesting Pinaceae on seed production.

Oviposition strategies of conifer seed chalcids in relation to host phenology

NASA Astrophysics Data System (ADS)

Rouault, Gaëlle; Turgeon, Jean; Candau, Jean-Noël; Roques, Alain; Aderkas, Patrick

2004-10-01

Insects are considered the most important predators of seed cones, the female reproductive structures of conifers, prior to seed dispersal. Slightly more than 100 genera of insects are known to parasitize conifer seed cones. The most diverse (i.e., number of species) of these genera is Megastigmus (Hymenoptera: Torymidae), which comprises many important seed pests of native and exotic conifers. Seed chalcids, Megastigmus spp., lay eggs inside the developing ovules of host conifers and, until recently, oviposition was believed to occur only in fertilized ovules. Ovule development begins just after pollination, but stops if cells are not fertilized. The morphological stage of cone development at the time of oviposition by seed chalcids has been established for many species; however, knowledge of ovule development at that time has been documented for only one species, M. spermotrophus. Megastigmus spermotrophus oviposits in Douglas-fir ovules after pollination but before fertilization. Unlike the unfertilized ovules, those containing a M. spermotrophus larva continue to develop, whether fertilized or not, stressing the need to broaden our understanding of the insect plant interactions for this entire genus. To achieve this task, we reviewed the scientific literature and assembled information pertaining to the timing of oviposition and to the pollination and fertilization periods of their respective host(s). More specifically, we were searching for circumstantial evidence that other species of Megastigmus associated with conifers could behave (i.e., oviposit before ovule fertilization) and impact on female gametophyte (i.e., prevent abortion) like M. spermotrophus. The evidence from our compilation suggests that seed chalcids infesting Pinaceae may also oviposit before ovule fertilization, just like M. spermotrophus, whereas those infesting Cupressaceae seemingly oviposit after ovule fertilization. Based on this evidence, we hypothesize that all species of Megastigmus associated with Pinaceae can oviposit in unfertilized ovules, whereas those exploiting Cupressaceae cannot, and thus oviposit only in already fully developed fertilized seeds. Furthermore, we predict that the presence of a larva in unfertilized ovules of all Pinaceae will influence the development of the female gametophyte by preventing its abortion. This influence on the Pinaceae can be interpreted as an ability to parasitize any of the potential seeds present in a seed cone, and as such represents a much more efficient oviposition strategy than searching and locating only fertilized seeds. Concomitantly, this ability has likely led to an overestimation of the impact of the species of seed chalcid infesting Pinaceae on seed production.

Studies on the structure of the plant wax nonacosan-10-ol, the main component of epicuticular wax conifers.

PubMed

Matas, Antonio J; Sanz, María José; Heredia, Antonio

2003-11-01

The main component presents in the epicuticular waxes of needles of Pinus halepensis and the most of conifers, the secondary alcohol nonacosan-10-ol, has been investigated by X-ray diffraction and differential scanning calorimetry. The results obtained from these physical techniques permitted to establish a definitive structural model of the molecular arrangement of this wax, basically in good agreement with the model formulated by other authors from theoretical formulations. Biological implications of the proposed structure have been also formulated.

Review of the genus Hemistola Warren, 1893 in Taiwan with notes on an unusual conifer-feeding larva and descriptions of three new species (Lepidoptera, Geometridae, Geometrinae).

PubMed

Chang, Wei-Chun; Wu, Shipher

2013-11-29

The genus Hemistola Warren, 1893 in Taiwan is reviewed. Seven species are confirmed, with descriptions of three new species provided: H. piceacola sp. nov., H. fui sp. nov. and H. taiwanensis sp. nov. The immature stages and unusual conifer-feeding behavior of H. piceacola on Taiwan spruce (Picea morrisonicola) are reported. The distribution of H. tenuilinea (Alphéraky, 1897) is discussed and this species is omitted from the Taiwanese fauna.

Monoicy in A. angustifolia (Bert.) O. Kuntze (Araucariaceae): I. Morphological aspects of the reproductive structures.

PubMed

Stefenon, Valdir M; Caprestano, Clarissa A

2009-12-01

Araucaria angustifolia (Bert.) O. Kuntze is a dioecious conifer species native of Brazil. The rare occurrence of monoiceous specimens have been attributed to pathogenic infections or other injuries in adult trees. Here, the morphological characteristics of male and female cones and pollen grains of a monoiceous A. angustifolia are described. Male and female cones and pollen grains presented normal morphology, lacking any sort of injuries or infection and suggesting the existence of further grounds for the occurrence of monoicy in this conifer species.

Bioactive Secondary Metabolites Produced by the Fungal Endophytes of Conifers.

PubMed

Stierle, Andrea A; Stierle, Donald B

2015-10-01

This is a review of bioactive secondary metabolites isolated from conifer-associated endophytic fungi from 1990-2014. This includes compounds with antimicrobial, anti-inflammatory, anti-proliferative and cytotoxic activity towards human cancer cell lines, and activity against either plant pathogens or plant insect pests. Compounds that were originally reported without associated activity were included if other studies ascribed activity to these compounds. Compounds were not included if they were exclusively phytotoxic or if they were isolated from active extracts but were not determined to be the active component of that extract.

Mapping tree canopy cover in support of proactive prairie grouse conservation in western North America

USGS Publications Warehouse

Falkowski, Michael J.; Evans, Jeffrey S.; Naugle, David E.; Hagen, Christian A.; Carleton, Scott A.; Maestas, Jeremy D.; Henareh Khalyani, Azad; Poznanovic, Aaron J.; Lawrence, Andrew J.

2017-01-01

Invasive woody plant expansion is a primary threat driving fragmentation and loss of sagebrush (Artemisia spp.) and prairie habitats across the central and western United States. Expansion of native woody plants, including conifer (primarily Juniperus spp.) and mesquite (Prosopis spp.), over the past century is primarily attributable to wildfire suppression, historic periods of intensive livestock grazing, and changes in climate. To guide successful conservation programs aimed at reducing top-down stressors, we mapped invasive woody plants at regional scales to evaluate landscape level impacts, target restoration actions, and monitor restoration outcomes. Our overarching goal was to produce seamless regional products across sociopolitical boundaries with resolution fine enough to depict the spatial extent and degree of woody plant invasion relevant to greater sage-grouse (Centrocercus urophasianus) and lesser prairie-chicken (Tympanuchus pallidicinctus)conservation efforts. We mapped tree canopy cover at 1-m spatial resolution across an 11-state region (508 265 km2). Greater than 90% of occupied lesser prairie-chicken habitat was largely treeless for conifers (< 1% canopy cover), whereas > 67% was treeless for mesquite. Conifers in the higher canopy cover classes (16 − 50% and > 50% canopy cover) were scarce (< 2% and 1% canopy cover), as was mesquite (< 5% and 1% canopy cover). Occupied habitat by sage-grouse was more variable but also had a relatively large proportion of treeless areas (x−">x− = 71, SE = 5%). Low to moderate levels of conifer cover (1 − 20%) were fewer (x−">x− = 23, SE = 5%) as were areas in the highest cover class (> 50%; x−">x−= 6, SE = 2%). Mapping indicated that a high proportion of invading woody plants are at a low to intermediate level. Canopy cover maps for conifer and mesquite resulting from this study provide the first and most geographically complete, high-resolution assessment of woody plant cover as a top-down threat to western sage-steppe and prairie ecosystems.

Connecting long term species changes and their water competitions in temperate forest Mt. Baegun, Rep. of Korea using hydrogen and oxygen stable isotope analysis

NASA Astrophysics Data System (ADS)

Jeon, J.; Lee, H.; Lee, M.; Song, W.; Byeon, S.; Lee, B.; Cho, S.; Park, J.; Kim, H. S.

2017-12-01

Many dynamic vegetation model simulations have predicted dramatic changes in species composition of temperate forests due to climate changes and successional reasons. Especially, conifer species are expected to lose their habitats and to be replaced by broadleaf species. Similarly, our more than 15-years-long 880 permenant plots tree survey data in Mt. Baegun, Rep. of Korea, showed substantial decrease of conifer species and their productivities and increase of broadleaved species. One of main reasons for these changes in species could be attributed to the water competition among tree species in the same stand. Therefore, we investigated the differences in water uptake scheme between conifer and broadleaf species from the temperate forests of Korea using stable isotopes. Six study plots showing high competition (conifers vs. broadleaf species) based on previous vegetation survey were chosen and the species-specific water uptake depth was estimated by measuring hydrogen(δ2H) and oxygen(δ18O) ratio from the xylem sap and leaves of individual species and by comparing them with those of soil water from 5 depths, (10, 30, 50, 100 and 120 cm), which extracted by lysimeter. The collection was conducted from April 2016 to Nov 2017. The conifer species included Pinus densiflora and Chamaecyparis obtusa vs. broadleaved species included Carpinus laxiflora, Prunus sargentii, Styrax obassia, Lindera erythrocarpa and Quercus species such as Q. mongolica, Q. serrata, Q. accuticima. Preliminary results showed the stable isotope signatures of soil water was increased from 10 cm to 30 cm, and then decreased gradually until 120 cm. In addition, current dominant canopy species, Chamaecyparis obtusa absorbed majority of their water from 10 to 30 cm depth. In comparison, current mid canopy but one of upcoming dominant species, Styrax obassia's major water source was 30 cm and deeper of soil. Our results could be essential for the prediction of species composition under climate change by providing species-specific adaptation ability connected to its water uptake scheme.

Biomes of western North America at 18,000, 6000 and 0 14C yr BP reconstructed from pollen and packrat midden data

USGS Publications Warehouse

Thompson, R.S.; Anderson, K.H.

2000-01-01

A new compilation of pollen and packrat midden data from western North America provides a refined reconstruction of the composition and distribution of biomes in western North America for today and for 6000 and 18,000 radiocarbon years before present (14C yr BP). Modern biomes in western North America are adequately portrayed by pollen assemblages from lakes and bogs. Forest biomes in western North America share many taxa in their pollen spectra and it can be difficult to discriminate among these biomes. Plant macrofossils from packrat middens provide reliable identification of modern biomes from arid and semiarid regions, and this may also be true in similar environments in other parts of the world. However, a weighting factor for trees and shrubs must be used to reliably reconstruct modern biomes from plant macrofossils. A new biome, open conifer woodland, which includes eurythermic conifers and steppe plants, was defined to categorize much of the current and past vegetation of the semiarid interior of western North America. At 6000 14C yr BP, the forest biomes of the coastal Pacific North-west and the desert biomes of the South-west were in near-modern positions. Biomes in the interior Pacific North-west differed from those of today in that taiga prevailed in modern cool/cold mixed forests. Steppe was present in areas occupied today by open conifer woodland in the northern Great Basin, while in the central and southern Rocky Mountains forests grew where steppe grows today. During the mid-Holocene, cool conifer forests were expanded in the Rocky Mountains (relative to today) but contracted in the Sierra Nevada. These differences from the forests of today imply different climatic histories in these two regions between 6000 14C yr BP and today. At 18,000 14C yr BP, deserts were absent from the South-west and the coverage of open conifer woodland was greatly expanded relative to today. Steppe and tundra were present in much of the region now covered by forests in the Pacific North-west.

Frost drought in conifers at the alpine timberline: xylem dysfunction and adaptations.

PubMed

Mayr, Stefan; Hacke, Uwe; Schmid, Peter; Schwienbacher, Franziska; Gruber, Andreas

2006-12-01

Drought stress can cause xylem embolism in trees when the water potential (psi) in the xylem falls below specific vulnerability thresholds. At the alpine timberline, frost drought is known to cause excessive winter embolism unless xylem vulnerability or transpiration is sufficiently reduced to avoid critical psi. We compared annual courses of psi and embolism in Picea abies, Pinus cembra, Pinus mugo, Larix decidua, and Juniperus communis growing at the timberline vs. low altitude. In addition, vulnerability properties and related anatomical parameters as well as wood density (D(t)) and wall reinforcement (wall thickness related to conduit diameter) were studied. This allowed an estimate of stress intensities as well as a detection of adaptations that reduce embolism formation. At the alpine timberline, psi was lowest during winter with corresponding embolism rates of up to 100% in three of the conifers studied. Only Pinus cembra and Larix decidua avoided winter embolism due to moderate psi. Minor embolism was observed at low altitude where the water potentials of all species remained within a narrow range throughout the year. Within species, differences in psi50 (psi at 50% loss of conductivity) at high vs. low altitude were less than 1 MPa. In Picea abies and Pinus cembra, psi50 was more negative at the timberline while, in the other conifer species, psi50 was more negative at low altitude. Juniperus communis exhibited the lowest (-6.4 +/- 0.04 MPa; mean +/- SE) and Pinus mugo the highest psi50 (-3.34 +/- 0.03 MPa). In some cases, D(t) and tracheid wall reinforcement were higher than in previously established relationships of these parameters with psi50, possibly because of mechanical demands associated with the specific growing conditions. Conifers growing at the alpine timberline were exposed to higher drought stress intensities than individuals at low altitude. Frost drought during winter caused high embolism rates which were probably amplified by freeze-thaw stress. Although frost drought had a large effect on plant water transport, adaptations in hydraulic safety and related anatomical parameters were observed in only a few of the conifer species studied.

Xylem traits, leaf longevity and growth phenology predict growth and mortality response to defoliation in northern temperate forests.

PubMed

Foster, Jane R

2017-09-01

Defoliation outbreaks are biological disturbances that alter tree growth and mortality in temperate forests. Trees respond to defoliation in many ways; some recover rapidly, while others decline gradually or die. Functional traits such as xylem anatomy, growth phenology or non-structural carbohydrate (NSC) storage could explain these responses, but idiosyncratic measures used by defoliation studies have frustrated efforts to generalize among species. Here, I test for functional differences with published growth and mortality data from 37 studies, including 24 tree species and 11 defoliators from North America and Eurasia. I synthesized data into standardized variables suitable for numerical models and used linear mixed-effects models to test the hypotheses that responses to defoliation vary among species and functional groups. Standardized data show that defoliation responses vary in shape and degree. Growth decreased linearly or curvilinearly, least in ring-porous Quercus and deciduous conifers (by 10-40% per 100% defoliation), whereas growth of diffuse-porous hardwoods and evergreen conifers declined by 40-100%. Mortality increased exponentially with defoliation, most rapidly for evergreen conifers, then diffuse-porous, then ring-porous species and deciduous conifers (Larix). Goodness-of-fit for functional-group models was strong (R2c = 0.61-0.88), if lower than species-specific mixed-models (R2c = 0.77-0.93), providing useful alternatives when species data are lacking. These responses are consistent with functional differences in leaf longevity, wood growth phenology and NSC storage. When defoliator activity lags behind wood-growth, either because xylem-growth precedes budburst (Quercus) or defoliator activity peaks later (sawflies on Larix), impacts on annual wood-growth will always be lower. Wood-growth phenology of diffuse-porous species and evergreen conifers coincides with defoliation and responds more drastically, and lower axial NSC storage makes them more vulnerable to mortality as stress accumulates. These functional differences in response apply in general to disturbances that cause spring defoliation and provide a framework that should be incorporated into forest growth and vegetation models. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Photosynthetic phenological variation may promote coexistence among co-dominant tree species in a Madrean sky island mixed conifer forest.

PubMed

Potts, D L; Minor, R L; Braun, Z; Barron-Gafford, G A

2017-09-01

Across much of western North America, forests are predicted to experience a transition from snow- to rain-dominated precipitation regimes due to anthropogenic climate warming. Madrean sky island mixed conifer forests receive a large portion of their precipitation from summertime convective storms and may serve as a lens into the future for snow-dominated forests after prolonged warming. To better understand the linkage between physiological traits, climate variation, and the structure and function of mixed conifer forests, we measured leaf photosynthetic (A) responses to controlled variation in internal CO2 concentration (Ci) to quantify interspecific phenological variation in A/Ci-derived ecophysiological traits among ponderosa pine (Pinus ponderosa Lawson and C. Lawson), southwestern white pine (Pinus strobiformis Engelm.) and Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco). Species had similar, positive responses in net photosynthesis under ambient conditions (Anet) to the onset of summertime monsoonal precipitation, but during the cooler portions of the year P. ponderosa was able to maintain greater Anet than P. menziesii and P. strobiformis. Moreover, P. ponderosa had greater Anet in response to ephemerally favorable springtime conditions than either P. menziesii or P. strobiformis. Monsoonal precipitation was associated with a sharp rise in the maximum rates of electron transport (Jmax) and carboxylation (VCmax) in P. menziesii in comparison with P. ponderosa and P. strobiformis. In contrast, species shared similar low values of Jmax and VCmax in response to cool winter temperatures. Patterns of relative stomatal limitation followed predictions based on species' elevational distributions, reinforcing the role of stomatal behavior in maintaining hydraulic conductivity and shaping bioclimatic limits. Phenological variation in ecophysiologial traits among co-occurring tree species in a Madrean mixed conifer forest may promote temporal resource partitioning and thereby contribute to species' coexistence. Moreover, these results provide a physiological basis for predicting the ecological implications of North American mixed conifer forests currently transitioning from snow- to rain-dominated precipitation regimes. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Floral responses to the Late Paleozoic deglaciation

NASA Astrophysics Data System (ADS)

Looy, C. V.; DiMichele, W. A.

2011-12-01

The current human-induced thawing of ice house Earth prompts the careful examination of similar earlier events and their biotic consequences. The most recent full transition from a cool earth to a warm world took place in the Early to Middle Permian. Against a background of global warming, plant communities were affected globally resulting in migrations, extinctions and changed evolutionary patterns as a response to the environmental changes. The collapse of the southern hemisphere ice-sheets resulted in significant changes, not just at higher latitudes, but also in the tropics where the rainfall regime changed from seasonally dry to seasonally wet. In the Early Permian tropics - in areas where net sedimentation facilitates fossilization, to be more specific - vegetation rich in walchian conifers began to replace the spore plants and seed ferns that previously dominated the Late Pennsylvanian wetlands. The replacing drier floras probably lived in the basinal lowlands as well, but episodically at the drier times of climate cycles. New finds within the tropics of latest Early to Middle Permian-age, in particular from north-central Texas, indicate the existence of floras which were adapted to even more extended periods of drought. These were populated by the more derived voltzian conifers and other seed plants, such as cycads. Surprisingly, the clades in these floras were until recently only known from the tens-of-millions-of-years younger Late Permian and Early Mesozoic, where they were the dominant forms. These occurrences demonstrate that even more derived groups were already in existence and well differentiated by the Early Permian, outside the window of preservation. This pattern of change in conifers and their communities from north-central Texas is unique in that it represents the best documented record in the Phanerozoic of terrestrial ecosystem response to a change from a global cool-mode to warm-mode Earth. Conifers serve as "marker plants" for the progressively more derived and more xeric floras that appear during the advancing deglaciation. This record has the potential to serve as a model for the early evolution of conifers and their communities; and the impact of prolonged climate change on the evolution of such land plants.

Seasonal variability in foliar characteristics and physiology for boreal forest species at the five Saskatchewan tower sites during the 1994 Boreal Ecosystem-Atmosphere Study

NASA Astrophysics Data System (ADS)

Middleton, E. M.; Sullivan, J. H.; Bovard, B. D.; Deluca, A. J.; Chan, S. S.; Cannon, T. A.

1997-12-01

Leaf-level measurements of gas exchange, chemistry, morphology, and spectral optical properties were acquired at the five instrumented tower sites during the three 1994 growing season intensive field campaigns (IFCs) conducted near Prince Albert, Saskatchewan, as part of the Boreal Ecosystem-Atmosphere Study (BOREAS). Stands included old and young aspen (OA, YA) associated with the hazelnut shrub, old and young jack pine (OJP, YJP) stands, and an old black spruce (OBS) stand; white spruce (at YA) and an understory herb (dogbane, at OJP) were also examined. Midsummer peak photosynthesis for aspen leaves in the field (A, light saturated) and laboratory (Amax light and CO2 saturated) was ˜12.6 and 33-41 μmol CO2 m-2 s-1. Black spruce exhibited the lowest A, 3 μmol CO2 m-2 s-1. Jack pine and black spruce attained their highest Amax (17-20 μmol CO2 m-2 s-1) in late summer/early fall. Gas exchange by white spruce was significantly higher and stomatal limitation lower than for other conifers, at levels comparable to broadleaf responses. White spruce foliage had the highest chlorophyll content in fall (˜41 μg cm-2), followed by aspen (OA) and hazelnut (YA) in midsummer (˜31 μg cm-2). Specific leaf mass of aspen, hazelnut, and conifer foliage was 86, ˜47, and ˜174 g m-2, respectively. Leaf nitrogen content of broadleaves (18-40 g N g-1 dry wt) was 2-3 times greater than conifer needles (8-12 g N g-1). Significantly larger needles were produced at OJP versus YJP, but needle number per age class was greater at YJP. The absorbed photosynthetically active radiation fraction (fAPAR) in June/July averaged ˜80% for broadleaves and ˜83% in conifer needles. The simple ratio (SR, near-infrared/red ratio) calculated from foliar transmittances was more strongly related to fAPAR than SR calculated from reflectances, with stronger correlation for broadleaves (r=0.92) than for conifers (r=0.78).

Conifer health classification for Colorado, 2008

USGS Publications Warehouse

Cole, Christopher J.; Noble, Suzanne M.; Blauer, Steven L.; Friesen, Beverly A.; Curry, Stacy E.; Bauer, Mark A.

2010-01-01

Colorado has undergone substantial changes in forests due to urbanization, wildfires, insect-caused tree mortality, and other human and environmental factors. The U.S. Geological Survey Rocky Mountain Geographic Science Center evaluated and developed a methodology for applying remotely-sensed imagery for assessing conifer health in Colorado. Two classes were identified for the purposes of this study: healthy and unhealthy (for example, an area the size of a 30- x 30-m pixel with 20 percent or greater visibly dead trees was defined as ?unhealthy?). Medium-resolution Landsat 5 Thematic Mapper imagery were collected. The normalized, reflectance-converted, cloud-filled Landsat scenes were merged to form a statewide image mosaic, and a Normalized Difference Vegetation Index (NDVI) and Renormalized Difference Infrared Index (RDII) were derived. A supervised maximum likelihood classification was done using the Landsat multispectral bands, the NDVI, the RDII, and 30-m U.S. Geological Survey National Elevation Dataset (NED). The classification was constrained to pixels identified in the updated landcover dataset as coniferous or mixed coniferous/deciduous vegetation. The statewide results were merged with a separate health assessment of Grand County, Colo., produced in late 2008. Sampling and validation was done by collecting field data and high-resolution imagery. The 86 percent overall classification accuracy attained in this study suggests that the data and methods used successfully characterized conifer conditions within Colorado. Although forest conditions for Lodgepole Pine (Pinus contorta) are easily characterized, classification uncertainty exists between healthy/unhealthy Ponderosa Pine (Pinus ponderosa), Pi?on (Pinus edulis), and Juniper (Juniperus sp.) vegetation. Some underestimation of conifer mortality in Summit County is likely, where recent (2008) cloud-free imagery was unavailable. These classification uncertainties are primarily due to the spatial and temporal resolution of Landsat, and of the NLCD derived from this sensor. It is believed that high- to moderate-resolution multispectral imagery, coupled with field data, could significantly reduce the uncertainty rates. The USGS produced a four-county follow-up conifer health assessment using high-resolution RapidEye remotely sensed imagery and field data collected in 2009.

Comparative genomics reveals conservative evolution of the xylem transcriptome in vascular plants.

PubMed

Li, Xinguo; Wu, Harry X; Southerton, Simon G

2010-06-21

Wood is a valuable natural resource and a major carbon sink. Wood formation is an important developmental process in vascular plants which played a crucial role in plant evolution. Although genes involved in xylem formation have been investigated, the molecular mechanisms of xylem evolution are not well understood. We use comparative genomics to examine evolution of the xylem transcriptome to gain insights into xylem evolution. The xylem transcriptome is highly conserved in conifers, but considerably divergent in angiosperms. The functional domains of genes in the xylem transcriptome are moderately to highly conserved in vascular plants, suggesting the existence of a common ancestral xylem transcriptome. Compared to the total transcriptome derived from a range of tissues, the xylem transcriptome is relatively conserved in vascular plants. Of the xylem transcriptome, cell wall genes, ancestral xylem genes, known proteins and transcription factors are relatively more conserved in vascular plants. A total of 527 putative xylem orthologs were identified, which are unevenly distributed across the Arabidopsis chromosomes with eight hot spots observed. Phylogenetic analysis revealed that evolution of the xylem transcriptome has paralleled plant evolution. We also identified 274 conifer-specific xylem unigenes, all of which are of unknown function. These xylem orthologs and conifer-specific unigenes are likely to have played a crucial role in xylem evolution. Conifers have highly conserved xylem transcriptomes, while angiosperm xylem transcriptomes are relatively diversified. Vascular plants share a common ancestral xylem transcriptome. The xylem transcriptomes of vascular plants are more conserved than the total transcriptomes. Evolution of the xylem transcriptome has largely followed the trend of plant evolution.

Zeaxanthin-independent energy quenching and alternative electron sinks cause a decoupling of the relationship between the photochemical reflectance index (PRI) and photosynthesis in an evergreen conifer during spring

PubMed Central

Fréchette, Emmanuelle; Wong, Christopher Y. S.; Junker, Laura Verena; Chang, Christine Yao-Yun; Ensminger, Ingo

2015-01-01

In evergreen conifers, the winter down-regulation of photosynthesis and its recovery during spring are the result of a reorganization of the chloroplast and adjustments of energy-quenching mechanisms. These phenological changes may remain undetected by remote sensing, as conifers retain green foliage during periods of photosynthetic down-regulation. The aim was to assess if the timing of the spring recovery of photosynthesis and energy-quenching characteristics are accurately monitored by the photochemical reflectance index (PRI) in the evergreen conifer Pinus strobus. The recovery of photosynthesis was studied using chlorophyll fluorescence, leaf gas exchange, leaf spectral reflectance, and photosynthetic pigment measurements. To assess if climate change might affect the recovery of photosynthesis, seedlings were exposed to cold spring conditions or warm spring conditions with elevated temperature. An early spring decoupling of the relationship between photosynthesis and PRI in both treatments was observed. This was caused by differences between the timing of the recovery of photosynthesis and the timing of carotenoid and chlorophyll pool size adjustments which are the main factors controlling PRI during spring. It was also demonstrated that zeaxanthin-independent NPQ mechanisms undetected by PRI further contributed to the early spring decoupling of the PRI–LUE relationship. An important mechanism undetected by PRI seems to involve increased electron transport around photosystem I, which was a significant energy sink during the entire spring transition, particularly in needles exposed to a combination of high light and cold temperatures. PMID:26386258

Towards improved quantification of post-fire conifer mortality and recovery: Impacts of fire radiative flux on seedling and mature tree mortality, physiology, and growth

NASA Astrophysics Data System (ADS)

Sparks, A. M.; Kolden, C.; Smith, A. M.

2016-12-01

Fire activity, in terms of intensity, frequency, and total area burned, is expected to increase with changing climate. A challenge for landscape level assessment of fire effects, termed burn severity, is that current assessments provide very little information regarding vegetation physiological performance and recovery, limiting our understanding of fire effects on ecosystem services such as carbon storage/cycling. To address these limitations, we evaluated an alternative dose-response methodology for quantifying fire effects that attempts to bridge fire combustion dynamics and ecophysiology. Specifically, we conducted a highly controlled, laboratory assessment of seedling response to increasing doses of fire radiative energy applied through surface fires, for two western U.S. conifer species. Seedling physiology and spectral reflectance were acquired pre- and up to 1 year post-fire. Post-fire mortality, physiological performance, and spectral reflectance were strongly related with fire radiative energy density (FRED: J m-2) dose. To examine how these relationships change with tree size and age, we conducted small prescribed fires at the tree scale (35 m2) in a mature conifer stand. Radial growth and resin duct defenses were assessed on the mature conifer trees following the prescribed fires. Differences in dose-response relationships between seedlings and mature trees indicate the importance of fire behavior (e.g., flaming-dominated versus smoldering-dominated combustion) in characterizing these relationships. Ultimately, these results suggest that post-fire impacts on growth of surviving seedlings and mature trees require modes of heat transfer to impact tree canopies.

Comparative genomics reveals conservative evolution of the xylem transcriptome in vascular plants

PubMed Central

2010-01-01

Background Wood is a valuable natural resource and a major carbon sink. Wood formation is an important developmental process in vascular plants which played a crucial role in plant evolution. Although genes involved in xylem formation have been investigated, the molecular mechanisms of xylem evolution are not well understood. We use comparative genomics to examine evolution of the xylem transcriptome to gain insights into xylem evolution. Results The xylem transcriptome is highly conserved in conifers, but considerably divergent in angiosperms. The functional domains of genes in the xylem transcriptome are moderately to highly conserved in vascular plants, suggesting the existence of a common ancestral xylem transcriptome. Compared to the total transcriptome derived from a range of tissues, the xylem transcriptome is relatively conserved in vascular plants. Of the xylem transcriptome, cell wall genes, ancestral xylem genes, known proteins and transcription factors are relatively more conserved in vascular plants. A total of 527 putative xylem orthologs were identified, which are unevenly distributed across the Arabidopsis chromosomes with eight hot spots observed. Phylogenetic analysis revealed that evolution of the xylem transcriptome has paralleled plant evolution. We also identified 274 conifer-specific xylem unigenes, all of which are of unknown function. These xylem orthologs and conifer-specific unigenes are likely to have played a crucial role in xylem evolution. Conclusions Conifers have highly conserved xylem transcriptomes, while angiosperm xylem transcriptomes are relatively diversified. Vascular plants share a common ancestral xylem transcriptome. The xylem transcriptomes of vascular plants are more conserved than the total transcriptomes. Evolution of the xylem transcriptome has largely followed the trend of plant evolution. PMID:20565927

The stomatal CO2 proxy does not saturate at high atmospheric CO2 concentrations: evidence from stomatal index responses of Araucariaceae conifers.

PubMed

Haworth, Matthew; Elliott-Kingston, Caroline; McElwain, Jennifer C

2011-09-01

The inverse relationship between the number of stomata on a leaf surface and the atmospheric carbon dioxide concentration ([CO(2)]) in which the leaf developed allows plants to optimise water-use efficiency (WUE), but it also permits the use of fossil plants as proxies of palaeoatmospheric [CO(2)]. The ancient conifer family Araucariaceae is often represented in fossil floras and may act as a suitable proxy of palaeo-[CO(2)], yet little is known regarding the stomatal index (SI) responses of extant Araucariaceae to [CO(2)]. Four Araucaria species (Araucaria columnaris, A. heterophylla, A. angustifolia and A. bidwillii) and Agathis australis displayed no significant relationship in SI to [CO(2)] below current ambient levels (~380 ppm). However, representatives of the three extant genera within the Araucariaceae (A. bidwillii, A. australis and Wollemia nobilis) all exhibited significant reductions in SI when grown in atmospheres of elevated [CO(2)] (1,500 ppm). Stomatal conductance was reduced and WUE increased when grown under elevated [CO(2)]. Stomatal pore length did not increase alongside reduced stomatal density (SD) and SI in the three araucariacean conifers when grown at elevated [CO(2)]. These pronounced SD and SI reductions occur at higher [CO(2)] levels than in other species with more recent evolutionary origins, and may reflect an evolutionary legacy of the Araucariaceae in the high [CO(2)] world of the Mesozoic Era. Araucariacean conifers may therefore be suitable stomatal proxies of palaeo-[CO(2)] during periods of "greenhouse" climates and high [CO(2)] in the Earth's history.

Climate contributes to zonal forest mortality in Southern California's San Jacinto Mountains

NASA Astrophysics Data System (ADS)

Fellows, A.; Goulden, M.

2010-12-01

An estimated 4.6 million trees died over ~375,000 acres of Southern California forest in 2002-2004. This mortality punctuated a decline in forest health that has been attributed to air pollution, stem densification, or drought. Bark beetles were the proximate cause of most tree death but the underlying cause of this extensive mortality is arguably poor forest health. We investigated the contributions that climate, particularly drought, played in tree mortality and how physiological drought stress may have structured the observed patterns of mortality. Field surveys showed that conifer mortality was zonal in the San Jacinto Mountains of Southern California. The proportion of conifer mortality increased with decreasing elevation (p=0.01). Mid-elevation conifers (White Fir, Incense Cedar, Coulter Pine, Sugar Pine, Ponderosa and Jeffrey Pine) died in the lower portions of their respective ranges, which resulted in an upslope lean in species’ distribution and an upslope shift in species’ mean elevation. Long-term precipitation (P) is consistent with elevation over the conifer elevation range (p=0.43). Potential evapotranspiration (ET) estimated by Penman Monteith declines with elevation by nearly half over the same range. These trends suggest that ET, more than P, is critical in structuring the elevational trend in drought stress and may have contributed to the patterns of mortality that occurred in 2002-04. Physiological measurements in a mild drought year (2009) showed late summer declines in plant water availability with decreasing elevation (p < 0.01) and concomitant reductions in carbon assimilation and stomatal conductance with decreasing elevation. We tie these observations together with a simple water balance model.

Cold stability of microtubules in wood-forming tissues of conifers during seasons of active and dormant cambium.

PubMed

Begum, Shahanara; Shibagaki, Masaki; Furusawa, Osamu; Nakaba, Satoshi; Yamagishi, Yusuke; Yoshimoto, Joto; Jin, Hyun-O; Sano, Yuzou; Funada, Ryo

2012-01-01

The cold stability of microtubules during seasons of active and dormant cambium was analyzed in the conifers Abies firma, Abies sachalinensis and Larix leptolepis by immunofluorescence microscopy. Samples were fixed at room temperature and at a low temperature of 2-3°C to examine the effects of low temperature on the stability of microtubules. Microtubules were visible in cambium, xylem cells and phloem cells after fixation at room temperature during seasons of active and dormant cambium. By contrast, fixation at low temperature depolymerized microtubules in cambial cells, differentiating tracheids, differentiating xylem ray parenchyma and phloem ray parenchyma cells during the active season. However, similar fixation did not depolymerize microtubules during cambial dormancy in winter. Our results indicate that the stability of microtubules in cambial cells and cambial derivatives at low temperature differs between seasons of active and dormant cambium. Moreover, the change in the stability of microtubules that we observed at low temperature might be closely related to seasonal changes in the cold tolerance of conifers. In addition, low-temperature fixation depolymerized microtubules in cambial cells and differentiating cells that had thin primary cell walls, while such low-temperature fixation did not depolymerize microtubules in differentiating secondary xylem ray parenchyma cells and tracheids that had thick secondary cell walls. The stability of microtubules at low temperature appears to depend on the structure of the cell wall, namely, primary or secondary. Therefore, we propose that the secondary cell wall might be responsible for the cold stability of microtubules in differentiating secondary xylem cells of conifers.

Fuels Inventories in the Los Alamos National Laboratory Region: 1997

DOE Office of Scientific and Technical Information (OSTI.GOV)

Balice, R.G.; Oswald, B.P.; Martin, C.

1999-03-01

Fifty-four sites were surveyed for fuel levels, vegetational structures, and topographic characteristics. Most of the surveyed sites were on Los Alamos National Laboratory property, however, some surveys were also conducted on U.S. Forest Service property. The overall vegetation of these sites ranged from pinon-juniper woodlands to ponderosa pine forests to mixed conifer forests, and the topographic positions included canyons, mesas, and mountains. The results of these surveys indicate that the understory fuels are the greatest in mixed conifer forests and that overstory fuels are greatest in both mixed conifer forests and ponderosa pine forests on mesas. The geographic distribution ofmore » these fuels would suggest a most credible wildfire scenario for the Los Alamos region. Three major fires have occurred since 1954 and these fires behaved in a manner that is consistent with this scenario. The most credible wildfire scenario was also supported by the results of BEHAVE modeling that used the fuels inventory data as inputs. Output from the BEHAVE model suggested that catastrophic wildfires would continue to occur during any season with sufficiently dry, windy weather.« less

Tetracyclic diterpenoid hydrocarbons in some Australian coals, sediments and crude oils

NASA Astrophysics Data System (ADS)

Noble, Rohinton A.; Alexander, Robert; Kagi, Robert Ian; Knox, John

1985-10-01

Tetracyclic diterpenoid hydrocarbons (diterpanes) based on the ent-beyerane, phyllocladane and ent-kaurane skeletons have been identified in the hydrocarbon extracts of some Australian coals, sediments and crude oils. Structures were assigned to the geological diterpanes by comparison with synthetically prepared reference compounds. Studies of a sample suite consisting of low-rank coals and sediments indicate that the ratios of C-16 epimers of phyllocladane and ent-kaurane are maturity dependent, and that the relative proportion of the thermodynamically preferred 16β (H)-compounds increases with increasing thermal maturity. Thermodynamic equilibrium for the interconversion reactions is attained in sediments before the onset of crude oil generation. The most likely natural product precursors for the tetracyclic diterpanes are considered to be the tetracyclic diterpene hydrocarbons which occur widely in the leaf resins of conifers. Tetracyclic diterpanes have been identified in sediments and coals of Permian age or younger, suggesting that these compounds are markers for both modern and extinct families of conifers. In particular, phyllocladane is proposed as a marker for the Podocarpaceae family of conifers.

Acid mist and ozone effects on the leaf chemistry of two western conifer species

NASA Technical Reports Server (NTRS)

Westman, Walter E.; Temple, Patrick J.

1989-01-01

The effects of ozone and acid-mist exposures on the leaf chemistry of Jeffrey pine and giant sequoia seedlings grown in filtered-air greenhouses were investigated. Acid-mist treatments (pH 4.1, 3.4, 2.7, or 2.0) were administered for 3 h, and ozone exposures (0, 0.10, and 0.20 microliter/liter), which followed acid-mist treatments, for 4 h, each for three days a week for six to nine weeks. It was found that seedlings were more susceptible to acid-mist and acid mist/ozone combinations, than to ozone alone. Acid mist treatment resulted in higher levels of nitrogen and sulfur (both present in acid mist) as well as Na. Leaves of giant sequoia exhibited increased K and decreased Mn, while Jeffrey pine showed increases in Fe and Mn. In sequoia leaves, concentrations of Ca, Mg, and Ba decreased. Acid treatment also reduced chlorophyll b concentrations in both conifer species. Extensive changes induced by acid mist are consistent with earlier observations of changes in spectral reflectance of conifer seedlings observed after three weeks of fumigation.

Conifer Diterpene Resin Acids Disrupt Juvenile Hormone-Mediated Endocrine Regulation in the Indian Meal Moth Plodia interpunctella.

PubMed

Oh, Hyun-Woo; Yun, Chan-Seok; Jeon, Jun Hyoung; Kim, Ji-Ae; Park, Doo-Sang; Ryu, Hyung Won; Oh, Sei-Ryang; Song, Hyuk-Hwan; Shin, Yunhee; Jung, Chan Sik; Shin, Sang Woon

2017-07-01

Diterpene resin acids (DRAs) are important components of oleoresin and greatly contribute to the defense strategies of conifers against herbivorous insects. In the present study, we determined that DRAs function as insect juvenile hormone (JH) antagonists that interfere with the juvenile hormone-mediated binding of the JH receptor Methoprene-tolerant (Met) and steroid receptor coactivator (SRC). Using a yeast two-hybrid system transformed with Met and SRC from the Indian meal moth Plodia interpunctella, we tested the interfering activity of 3704 plant extracts against JH III-mediated Met-SRC binding. Plant extracts from conifers, especially members of the Pinaceae, exhibited strong interfering activity, and four active interfering DRAs (7α-dehydroabietic acid, 7-oxodehydroabietic acid, dehydroabietic acid, and sandaracopimaric acid) were isolated from roots of the Japanese pine Pinus densiflora. The four isolated DRAs, along with abietic acid, disrupted the juvenile hormone-mediated binding of P. interpunctella Met and SRC, although only 7-oxodehydroabietic acid disrupted larval development. These results demonstrate that DRAs may play a defensive role against herbivorous insects via insect endocrine-disrupting activity.

A taxonomic monograph of Nearctic Scolytus Geoffroy (Coleoptera, Curculionidae, Scolytinae)

PubMed Central

Smith, Sarah M.; Cognato, Anthony I.

2014-01-01

Abstract The Nearctic bark beetle genus Scolytus Geoffroy was revised based in part on a molecular and morphological phylogeny. Monophyly of the native species was tested using mitochondrial (COI) and nuclear (28S, CAD, ArgK) genes and 43 morphological characters in parsimony and Bayesian phylogenetic analyses. Parsimony analyses of molecular and combined datasets provided mixed results while Bayesian analysis recovered most nodes with posterior probabilities >90%. Native hardwood- and conifer-feeding Scolytus species were recovered as paraphyletic. Native Nearctic species were recovered as paraphyletic with hardwood-feeding species sister to Palearctic hardwood-feeding species rather than to native conifer-feeding species. The Nearctic conifer-feeding species were monophyletic. Twenty-five species were recognized. Four new synonyms were discovered: Scolytus praeceps LeConte, 1868 (= Scolytus abietis Blackman, 1934; = Scolytus opacus Blackman, 1934), Scolytus reflexus Blackman, 1934 (= Scolytus virgatus Bright, 1972; = Scolytus wickhami Blackman, 1934). Two species were reinstated: Scolytus fiskei Blackman, 1934 and Scolytus silvaticus Bright, 1972. A diagnosis, description, distribution, host records and images were provided for each species and a key is presented to all species. PMID:25408617

A synchronous increase in hydraulic conductive capacity and mechanical support in conifers with relatively uniform xylem structure.

PubMed

Jagels, Richard; Visscher, George E

2006-02-01

The dual function provided by longitudinal tracheids in conifers has led to a generally held trade-off concept that increasing wall thickness and/or volume of latewood tracheids improves mechanical support, while increasing cell diameter and/or volume of earlywood tracheids enhances conductive potential. Yet, some conifers have either uniform cell structure across the growth ring or, at most, a small amount of latewood. How do these trees accomplish the needs for increasing support and conduction with height growth? We examined Metasequoia glyptostroboides, a species that we previously demonstrated improves its mechanical properties with increasing age without a change in specific gravity or secondary wall microfibril angle. In this paper, we showed that lignin and extractive contents are not contributing factors, and through composite structure analysis, we eliminated a role for tracheid length. Using micromorphometric analysis, we demonstrated that as cell diameter increases, total primary wall decreases, secondary wall increases, and strength and conductive capacity increase with no change in specific gravity. Meta-analysis using other species of Cupressaceae, Podocarpaceae, and Araucariaceae provided strong corroborative evidence for this design strategy.

Remote sensing program

NASA Technical Reports Server (NTRS)

Whitmore, R. A., Jr. (Principal Investigator)

1980-01-01

A syllabus and training materials prepared and used in a series of one-day workshops to introduce modern remote sensing technology to selected groups of professional personnel in Vermont are described. Success in using computer compatible tapes, LANDSAT imagery and aerial photographs is reported for the following applications: (1) mapping defoliation of hardwood forests by tent caterpillar and gypsy moth; (2) differentiating conifer species; (3) mapping ground cover of major lake and pond watersheds; (4) inventorying and locating artificially regenerated conifer forest stands; (5) mapping water quality; (6) ascertaining the boat population to quantify recreational activity on lakes and waterways; and (7) identifying potential aquaculture sites.

Rapid analysis of abietanes in conifers.

PubMed

Kersten, P J; Kopper, B J; Raffa, K F; Illman, B L

2006-12-01

Diterpene resin acids are major constituents of conifer oleoresin and play important roles in tree defense against insects and microbial pathogens. The tricyclic C-20 carboxylic acids are generally classified into two groups, the abietanes and the pimaranes. The abietanes have conjugated double bonds and exhibit characteristic UV spectra. Here, we report the analysis of abietanes by reversed-phase high-performance liquid chromatography using multiwavelength detection to optimize quantification of underivatized abietic, neoabietic, palustric, levopimaric, and dehydroabietic acids. The utility of the method is demonstrated with methanol extracts of white spruce (Picea glauca) phloem, and representative concentrations are reported.

Diversity and seasonal variation of endophytic fungi isolated from three conifers in mt. Taehwa, Korea.

PubMed

Kim, Chang-Kyun; Eo, Ju-Kyeong; Eom, Ahn-Heum

2013-06-01

The needled leaves of three conifer species were collected in Mt. Taehwa during different seasons of the year. Total 59 isolates and 19 species of endophytic fungi were isolated from the leaves and identified using morphological and molecular characteristics. As a result, Shannon index was different in its host plant; Larix kaempferi had a highest value of species diversity. According to the sampling season, 9 species of 19 species were isolated during fall season. The results suggest that the existing of host plant and sampling season are major factors of distribution of endophytic fungi.

A cross-site comparison of factors influencing soil nitrification rates in northeastern USA forested watersheds

USGS Publications Warehouse

Ross, D.S.; Wemple, B.C.; Jamison, A.E.; Fredriksen, G.; Shanley, J.B.; Lawrence, G.B.; Bailey, S.W.; Campbell, J.L.

2009-01-01

Elevated N deposition is continuing on many forested landscapes around the world and our understanding of ecosystem response is incomplete. Soil processes, especially nitrification, are critical. Many studies of soil N transformations have focused on identifying relationships within a single watershed but these results are often not transferable. We studied 10 small forested research watersheds in the northeastern USA to determine if there were common factors related to soil ammonification and nitrification. Vegetation varied between mixed northern hardwoods and mixed conifers. Watershed surface soils (Oa or A horizons) were sampled at grid or transect points and analyzed for a suite of chemical characteristics. At each sampling point, vegetation and topographic metrics (field and GIS-based) were also obtained. Results were examined by watershed averages (n = 10), seasonal/watershed averages (n = 28), and individual sampling points (n = 608). Using both linear and tree regression techniques, the proportion of conifer species was the single best predictor of nitrification rates, with lower rates at higher conifer dominance. Similar to other studies, the soil C/N ratio was also a good predictor and was well correlated with conifer dominance. Unlike other studies, the presence of Acer saccharum was not by itself a strong predictor, but was when combined with the presence of Betula alleghaniensis. Topographic metrics (slope, aspect, relative elevation, and the topographic index) were not related to N transformation rates across the watersheds. Although found to be significant in other studies, neither soil pH, Ca nor Al was related to nitrification. Results showed a strong relationship between dominant vegetation, soil C, and soil C/N. ?? 2008 Springer Science+Business Media, LLC.

The Influence of Fuelbed Physical Properties on Biomass Burning Emissions

NASA Astrophysics Data System (ADS)

Urbanski, S. P.; Lincoln, E.; Baker, S. P.; Richardson, M.

2014-12-01

Emissions from biomass fires can significantly degrade regional air quality and therefore are of major concern to air regulators and land managers in the U.S. and Canada. Accurately estimating emissions from different fire types in various ecosystems is crucial to predicting and mitigating the impact of fires on air quality. The physical properties of ecosystems' fuelbeds can heavily influence the combustion processes (e.g. flaming or smoldering) and the resultant emissions. However, despite recent progress in characterizing the composition of biomass smoke, significant knowledge gaps remain regarding the linkage between basic fuelbed physical properties and emissions. In laboratory experiments we examined the effects of fuelbed properties on combustion efficiency (CE) and emissions for an important fuel component of temperate and boreal forests - conifer needles. The bulk density (BD), depth (DZ), and moisture content (MC) of Ponderosa Pine needle fuelbeds were manipulated in 75 burns for which gas and particle emissions were measured. We found CE was negatively correlated with BD, DZ and MC and that the emission factors of species associated with smoldering combustion processes (CO, CH4, particles) were positively correlated with these fuelbed properties. The study indicates the physical properties of conifer needle fuelbeds have a significant effect on CE and hence emissions. However, many of the emission models used to predict and manage smoke impacts on air quality assume conifer litter burns by flaming combustion with a high CE and correspondingly low emissions of CO, CH4, particles, and organic compounds. Our results suggest emission models underestimate emissions from fires involving a large component of conifer needles. Additionally, our findings indicate that laboratory studies of emissions should carefully control fuelbed physical properties to avoid confounding effects that may obscure the effects being tested and lead to erroneous interpretations.

Zeaxanthin-independent energy quenching and alternative electron sinks cause a decoupling of the relationship between the photochemical reflectance index (PRI) and photosynthesis in an evergreen conifer during spring.

PubMed

Fréchette, Emmanuelle; Wong, Christopher Y S; Junker, Laura Verena; Chang, Christine Yao-Yun; Ensminger, Ingo

2015-12-01

In evergreen conifers, the winter down-regulation of photosynthesis and its recovery during spring are the result of a reorganization of the chloroplast and adjustments of energy-quenching mechanisms. These phenological changes may remain undetected by remote sensing, as conifers retain green foliage during periods of photosynthetic down-regulation. The aim was to assess if the timing of the spring recovery of photosynthesis and energy-quenching characteristics are accurately monitored by the photochemical reflectance index (PRI) in the evergreen conifer Pinus strobus. The recovery of photosynthesis was studied using chlorophyll fluorescence, leaf gas exchange, leaf spectral reflectance, and photosynthetic pigment measurements. To assess if climate change might affect the recovery of photosynthesis, seedlings were exposed to cold spring conditions or warm spring conditions with elevated temperature. An early spring decoupling of the relationship between photosynthesis and PRI in both treatments was observed. This was caused by differences between the timing of the recovery of photosynthesis and the timing of carotenoid and chlorophyll pool size adjustments which are the main factors controlling PRI during spring. It was also demonstrated that zeaxanthin-independent NPQ mechanisms undetected by PRI further contributed to the early spring decoupling of the PRI-LUE relationship. An important mechanism undetected by PRI seems to involve increased electron transport around photosystem I, which was a significant energy sink during the entire spring transition, particularly in needles exposed to a combination of high light and cold temperatures. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Conifer density within lake catchments predicts fish mercury concentrations in remote subalpine lakes

USGS Publications Warehouse

Eagles-Smith, Collin A.; Herring, Garth; Johnson, Branden L.; Graw, Rick

2016-01-01

Remote high-elevation lakes represent unique environments for evaluating the bioaccumulation of atmospherically deposited mercury through freshwater food webs, as well as for evaluating the relative importance of mercury loading versus landscape influences on mercury bioaccumulation. The increase in mercury deposition to these systems over the past century, coupled with their limited exposure to direct anthropogenic disturbance make them useful indicators for estimating how changes in mercury emissions may propagate to changes in Hg bioaccumulation and ecological risk. We evaluated mercury concentrations in resident fish from 28 high-elevation, sub-alpine lakes in the Pacific Northwest region of the United States. Fish total mercury (THg) concentrations ranged from 4 to 438 ng/g wet weight, with a geometric mean concentration (±standard error) of 43 ± 2 ng/g ww. Fish THg concentrations were negatively correlated with relative condition factor, indicating that faster growing fish that are in better condition have lower THg concentrations. Across the 28 study lakes, mean THg concentrations of resident salmonid fishes varied as much as 18-fold among lakes. We used a hierarchal statistical approach to evaluate the relative importance of physiological, limnological, and catchment drivers of fish Hg concentrations. Our top statistical model explained 87% of the variability in fish THg concentrations among lakes with four key landscape and limnological variables: catchment conifer density (basal area of conifers within a lake's catchment), lake surface area, aqueous dissolved sulfate, and dissolved organic carbon. Conifer density within a lake's catchment was the most important variable explaining fish THg concentrations across lakes, with THg concentrations differing by more than 400 percent across the forest density spectrum. These results illustrate the importance of landscape characteristics in controlling mercury bioaccumulation in fish.

Concentrations and content of mercury in bark, wood, and leaves in hardwoods and conifers in four forested sites in the northeastern USA

PubMed Central

Yanai, Ruth D.; Driscoll, Charles T.; Montesdeoca, Mario; Smith, Kevin T.

2018-01-01

Mercury (Hg) is deposited from the atmosphere to remote areas such as forests, but the amount of Hg in trees is not well known. To determine the importance of Hg in trees, we analyzed foliage, bark and bole wood of eight tree species at four sites in the northeastern USA (Huntington Forest, NY; Sleepers River, VT; Hubbard Brook, NH; Bear Brook, ME). Foliar concentrations of Hg averaged 16.3 ng g-1 among the hardwood species, which was significantly lower than values in conifers, which averaged 28.6 ng g-1 (p < 0.001). Similarly, bark concentrations of Hg were lower (p < 0.001) in hardwoods (7.7 ng g-1) than conifers (22.5 ng g-1). For wood, concentrations of Hg were higher in yellow birch (2.1–2.8 ng g-1) and white pine (2.3 ng g-1) than in the other species, which averaged 1.4 ng g-1 (p < 0.0001). Sites differed significantly in Hg concentrations of foliage and bark (p = 0.02), which are directly exposed to the atmosphere, but the concentration of Hg in wood depended more on species (p < 0.001) than site (p = 0.60). The Hg contents of tree tissues in hardwood stands, estimated from modeled biomass and measured concentrations at each site, were higher in bark (mean of 0.10 g ha-1) and wood (0.16 g ha-1) than in foliage (0.06 g ha-1). In conifer stands, because foliar concentrations were higher, the foliar pool tended to be more important. Quantifying Hg in tree tissues is essential to understanding the pools and fluxes of Hg in forest ecosystems. PMID:29684081

Tipping point of a conifer forest ecosystem under severe drought

NASA Astrophysics Data System (ADS)

Huang, Kaicheng; Yi, Chuixiang; Wu, Donghai; Zhou, Tao; Zhao, Xiang; Blanford, William J.; Wei, Suhua; Wu, Hao; Ling, Du; Li, Zheng

2015-02-01

Drought-induced tree mortality has recently received considerable attention. Questions have arisen over the necessary intensity and duration thresholds of droughts that are sufficient to trigger rapid forest declines. The values of such tipping points leading to forest declines due to drought are presently unknown. In this study, we have evaluated the potential relationship between the level of tree growth and concurrent drought conditions with data of the tree growth-related ring width index (RWI) of the two dominant conifer species (Pinus edulis and Pinus ponderosa) in the Southwestern United States (SWUS) and the meteorological drought-related standardized precipitation evapotranspiration index (SPEI). In this effort, we determined the binned averages of RWI and the 11 month SPEI within the month of July within each bin of 30 of RWI in the range of 0-3000. We found a significant correlation between the binned averages of RWI and SPEI at the regional-scale under dryer conditions. The tipping point of forest declines to drought is predicted by the regression model as SPEItp = -1.64 and RWItp = 0, that is, persistence of the water deficit (11 month) with intensity of -1.64 leading to negligible growth for the conifer species. When climate conditions are wetter, the correlation between the binned averages of RWI and SPEI is weaker which we believe is most likely due to soil water and atmospheric moisture levels no longer being the dominant factor limiting tree growth. We also illustrate a potential application of the derived tipping point (SPEItp = -1.64) through an examination of the 2002 extreme drought event in the SWUS conifer forest regions. Distinguished differences in remote-sensing based NDVI anomalies were found between the two regions partitioned by the derived tipping point.

Cross-species amplification of mitochondrial DNA sequence-tagged-site markers in conifers: the nature of polymorphism and variation within and among species in Picea.

PubMed

Jaramillo-Correa, J P; Bousquet, J; Beaulieu, J; Isabel, N; Perron, M; Bouillé, M

2003-05-01

Primers previously developed to amplify specific non-coding regions of the mitochondrial genome in Angiosperms, and new primers for additional non-coding mtDNA regions, were tested for their ability to direct DNA amplification in 12 conifer taxa and to detect sequence-tagged-site (STS) polymorphisms within and among eight species in Picea. Out of 12 primer pairs, nine were successful at amplifying mtDNA in most of the taxa surveyed. In conifers, indels and substitutions were observed for several loci, allowing them to distinguish between families, genera and, in some cases, between species within genera. In Picea, interspecific polymorphism was detected for four loci, while intraspecific variation was observed for three of the mtDNA regions studied. One of these (SSU rRNA V1 region) exhibited indel polymorphisms, and the two others ( nad1 intron b/c and nad5 intron1) revealed restriction differences after digestion with Sau3AI (PCR-RFLP). A fourth locus, the nad4L- orf25 intergenic region, showed a multibanding pattern for most of the spruce species, suggesting a possible gene duplication. Maternal inheritance, expected for mtDNA in conifers, was observed for all polymorphic markers except the intergenic region nad4L- orf25. Pooling of the variation observed with the remaining three markers resulted in two to six different mtDNA haplotypes within the different species of Picea. Evidence for intra-genomic recombination was observed in at least two taxa. Thus, these mitotypes are likely to be more informative than single-locus haplotypes. They should be particularly useful for the study of biogeography and the dynamics of hybrid zones.

Canadian boreal pulp and paper feedstocks contain neuroactive substances that interact in vitro with GABA and dopaminergic systems in the brain.

PubMed

Waye, Andrew; Annal, Malar; Tang, Andrew; Picard, Gabriel; Harnois, Frédéric; Guerrero-Analco, José A; Saleem, Ammar; Hewitt, L Mark; Milestone, Craig B; MacLatchy, Deborah L; Trudeau, Vance L; Arnason, John T

2014-01-15

Pulp and paper wood feedstocks have been previously implicated as a source of chemicals with the ability to interact with or disrupt key neuroendocrine endpoints important in the control of reproduction. We tested nine Canadian conifers commonly used in pulp and paper production as well as 16 phytochemicals that have been observed in various pulp and paper mill effluent streams for their ability to interact in vitro with the enzymes monoamine oxidase (MAO), glutamic acid decarboxylase (GAD), and GABA-transaminase (GABA-T), and bind to the benzodiazepine-binding site of the GABA(A) receptor (GABA(A)-BZD). These neuroendocrine endpoints are also important targets for treatment of neurological disorders such as anxiety, epilepsy, or depression. MAO and GAD were inhibited by various conifer extracts of different polarities, including major feedstocks such as balsam fir, black spruce, and white spruce. MAO was selectively stimulated or inhibited by many of the tested phytochemicals, with inhibition observed by a group of phenylpropenes (e.g. isoeugenol and vanillin). Selective GAD inhibition was also observed, with all of the resin acids tested being inhibitory. GABA(A)-BZD ligand displacement was also observed. We compiled a table identifying which of these phytochemicals have been described in each of the species tested here. Given the diversity of conifer species and plant chemicals with these specific neuroactivities, it is reasonable to propose that MAO and GAD inhibition reported in effluents is phytochemical in origin. We propose disruption of these neuroendocrine endpoints as a possible mechanism of reproductive inhibition, and also identify an avenue for potential research and sourcing of conifer-derived neuroactive natural products. © 2013.

Identification and expression profiles of sRNAs and their biogenesis and action-related genes in male and female cones of Pinus tabuliformis.

PubMed

Niu, Shi-Hui; Liu, Chang; Yuan, Hu-Wei; Li, Pei; Li, Yue; Li, Wei

2015-09-15

Small RNA (sRNA) play pivotal roles in reproductive development, and their biogenesis and action mechanisms are well characterised in angiosperm plants; however, corresponding studies in conifers are very limited. To improve our understanding of the roles of sRNA pathways in the reproductive development of conifers, the genes associated with sRNA biogenesis and action pathways were identified and analysed, and sRNA sequencing and parallel analysis of RNA ends (PARE) were performed in male and female cones of the Chinese pine (Pinus tabuliformis). Based on high-quality reference transcriptomic sequences, 21 high-confidence homologues involved in sRNA biogenesis and action in P. tabuliformis were identified, including two different DCL3 genes and one AGO4 gene. More than 75 % of genes involved in sRNA biogenesis and action have higher expression levels in female than in male cones. Twenty-six microRNA (miRNA) families and 74 targets, including 46 24-nt sRNAs with a 5' A, which are specifically expressed in male cones or female cones and probably bind to AGO4, were identified. The sRNA pathways have higher activity in female than in male cones, and the miRNA pathways are the main sRNA pathways in P. tabuliformis. The low level of 24-nt short-interfering RNAs in conifers is not caused by the absence of biogenesis-related genes or AGO-binding proteins, but most likely caused by the low accumulation of these key components. The identification of sRNAs and their targets, as well as genes associated with sRNA biogenesis and action, will provide a good starting point for investigations into the roles of sRNA pathways in cone development in conifers.

Contrasting patterns of survival and dispersal in multiple habitats reveal an ecological trap in a food-caching bird.

PubMed

Norris, D Ryan; Flockhart, D T Tyler; Strickland, Dan

2013-11-01

A comprehensive understanding of how natural and anthropogenic variation in habitat influences populations requires long-term information on how such variation affects survival and dispersal throughout the annual cycle. Gray jays Perisoreus canadensis are widespread boreal resident passerines that use cached food to survive over the winter and to begin breeding during the late winter. Using multistate capture-recapture analysis, we examined apparent survival and dispersal in relation to habitat quality in a gray jay population over 34 years (1977-2010). Prior evidence suggests that natural variation in habitat quality is driven by the proportion of conifers on territories because of their superior ability to preserve cached food. Although neither adults (>1 year) nor juveniles (<1 year) had higher survival rates on high-conifer territories, both age classes were less likely to leave high-conifer territories and, when they did move, were more likely to disperse to high-conifer territories. In contrast, survival rates were lower on territories that were adjacent to a major highway compared to territories that did not border the highway but there was no evidence for directional dispersal towards or away from highway territories. Our results support the notion that natural variation in habitat quality is driven by the proportion of coniferous trees on territories and provide the first evidence that high-mortality highway habitats can act as an equal-preference ecological trap for birds. Reproductive success, as shown in a previous study, but not survival, is sensitive to natural variation in habitat quality, suggesting that gray jays, despite living in harsh winter conditions, likely favor the allocation of limited resources towards self-maintenance over reproduction.

Wildlife species associated with non-coniferous vegetation in Pacific Northwest conifer forests: A review

USGS Publications Warehouse

Hagar, J.C.

2007-01-01

Non-coniferous vegetation, including herbs, shrubs, and broad-leaved trees, makes a vital contribution to ecosystem function and diversity in Pacific Northwest conifer forests. However, forest management has largely been indifferent or detrimental to shrubs and trees that have low commercial value, in spite of a paradigm shift towards more holistic management in recent decades. Forest management practices that are detrimental to broad-leaved trees and shrubs are likely to decrease habitat diversity for wildlife, but the number of species that may be affected has not previously been enumerated. I reviewed life history accounts for forest-dwelling vertebrate wildlife species and derived a list of 78 species in Oregon and Washington that are associated with non-coniferous vegetation. The diversity of direct and indirect food resources provided was the primary functional basis for associations of most species with non-coniferous vegetation. Thus, a diversity of herbs and broad-leaved trees and shrubs provides the foundation for food webs that contribute to diversity at multiple trophic levels in Pacific Northwest conifer forests. Given the number of species associated with non-coniferous vegetation in conifer-dominated forests, maintaining habitats that support diverse plant communities, particularly broad-leaved trees and shrubs, will be an important component of management strategies intended to foster biodiversity. Silvicultural practices such as modified planting densities, and pre-commercial and commercial thinning, can be used to control stand density in order to favor the development of understory herbs, shrubs, and a diversity of tree species within managed stands. Allowing shrubs and hardwood trees to develop and persist in early seral stands by curtailing vegetation control also would benefit many species associated with non-coniferous vegetation.

LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes

PubMed Central

Cossu, Rosa Maria; Casola, Claudio; Giacomello, Stefania; Vidalis, Amaryllis

2017-01-01

Abstract The accumulation and removal of transposable elements (TEs) is a major driver of genome size evolution in eukaryotes. In plants, long terminal repeat (LTR) retrotransposons (LTR-RTs) represent the majority of TEs and form most of the nuclear DNA in large genomes. Unequal recombination (UR) between LTRs leads to removal of intervening sequence and formation of solo-LTRs. UR is a major mechanism of LTR-RT removal in many angiosperms, but our understanding of LTR-RT-associated recombination within the large, LTR-RT-rich genomes of conifers is quite limited. We employ a novel read-based methodology to estimate the relative rates of LTR-RT-associated UR within the genomes of four conifer and seven angiosperm species. We found the lowest rates of UR in the largest genomes studied, conifers and the angiosperm maize. Recombination may also resolve as gene conversion, which does not remove sequence, so we analyzed LTR-RT-associated gene conversion events (GCEs) in Norway spruce and six angiosperms. Opposite the trend for UR, we found the highest rates of GCEs in Norway spruce and maize. Unlike previous work in angiosperms, we found no evidence that rates of UR correlate with retroelement structural features in the conifers, suggesting that another process is suppressing UR in these species. Recent results from diverse eukaryotes indicate that heterochromatin affects the resolution of recombination, by favoring gene conversion over crossing-over, similar to our observation of opposed rates of UR and GCEs. Control of LTR-RT proliferation via formation of heterochromatin would be a likely step toward large genomes in eukaryotes carrying high LTR-RT content. PMID:29228262

More introgression with less gene flow: chloroplast vs. mitochondrial DNA in the Picea asperata complex in China, and comparison with other Conifers.

PubMed

Du, Fang K; Petit, Rémy J; Liu, Jian Quan

2009-04-01

Recent work has suggested that rates of introgression should be inversely related to levels of gene flow because introgressed populations cannot be 'rescued' by intraspecific gene flow if it is too low. Mitochondrial and chloroplast DNA (mtDNA and cpDNA) experience very different levels of gene flow in conifers due to their contrasted maternal and paternal modes of transmission, hence the prediction that mtDNA should introgress more readily than cpDNA in this group. Here, we use sequence data from both mtDNA and cpDNA to test this hypothesis in a group of closely related spruces species, the Picea asperata complex from China. Nine mitochondrial and nine chloroplast haplotypes were recovered from 459 individuals in 46 natural populations belonging to five species of the Picea asperata complex. Low variation was found in the two mtDNA introns along with a high level of differentiation among populations (G(ST) = 0.90). In contrast, we detected higher variation and lower differentiation among populations at cpDNA markers (G(ST) = 0.56), a trend shared by most conifer species studied so far. We found that cpDNA variation, although far from being fully diagnostic, is more species-specific than mtDNA variation: four groups of populations were identified using cpDNA markers, all of them related to species or groups of species, whereas for mtDNA, geographical variation prevails over species differentiation. The literature suggests that mtDNA haplotypes are often shared among related conifer species, whereas cpDNA haplotypes are more species-specific. Hence, increased intraspecific gene flow appears to decrease differentiation within species but not among species.

An Ancient Transkingdom Horizontal Transfer of Penelope-Like Retroelements from Arthropods to Conifers.

PubMed

Lin, Xuan; Faridi, Nurul; Casola, Claudio

2016-05-02

Comparative genomics analyses empowered by the wealth of sequenced genomes have revealed numerous instances of horizontal DNA transfers between distantly related species. In eukaryotes, repetitive DNA sequences known as transposable elements (TEs) are especially prone to move across species boundaries. Such horizontal transposon transfers, or HTTs, are relatively common within major eukaryotic kingdoms, including animals, plants, and fungi, while rarely occurring across these kingdoms. Here, we describe the first case of HTT from animals to plants, involving TEs known as Penelope-like elements, or PLEs, a group of retrotransposons closely related to eukaryotic telomerases. Using a combination of in situ hybridization on chromosomes, polymerase chain reaction experiments, and computational analyses we show that the predominant PLE lineage, EN(+)PLEs, is highly diversified in loblolly pine and other conifers, but appears to be absent in other gymnosperms. Phylogenetic analyses of both protein and DNA sequences reveal that conifers EN(+)PLEs, or Dryads, form a monophyletic group clustering within a clade of primarily arthropod elements. Additionally, no EN(+)PLEs were detected in 1,928 genome assemblies from 1,029 nonmetazoan and nonconifer genomes from 14 major eukaryotic lineages. These findings indicate that Dryads emerged following an ancient horizontal transfer of EN(+)PLEs from arthropods to a common ancestor of conifers approximately 340 Ma. This represents one of the oldest known interspecific transmissions of TEs, and the most conspicuous case of DNA transfer between animals and plants. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution 2016. This work is written by US Government employees and is in the public domain in the US.

Ecophysiological controls of conifer distributions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Woodward, F.I.

1995-07-01

The boreal forest covers the most extensive worldwide area of conifer-dominated vegetation, with a total global area of about 12 million km{sup 2}. This large area is very species poor; in North America there are only nine widespread and dominant species of trees, of which six are conifers-Picea mariana, Picea glauca, Abies balsamea, Larix laricina, Pinus contorta, and Pinus banksiana. The remaining three angiosperms are Betula papyrifera, Populus tremuloides, and Populus balsamifera. In Fennoscandia and the former Soviet Union, 14 species dominate the boreal forest, 10 of which are conifers-Abies sibirica, Larix gmelinii, Larix sibirica, Larix sukaczewii, Picea abies, Piceamore » ajanensis, Picea obovata, Pinus pumila, Pinus sibifica, and Pinus sylvestris. The dominant angiosperm trees are Betula pendula, Betula pubescens, Chosenia arbutifolia, and Populus tremula. Such species paucity detracts from realizing the remarkable capacity of these species to endure the harshest forest climates of the world. Both the short-term geological history and the current climate are major causes of the species paucity in the boreal forest. In general, the boreal forest has been present in its current distribution only since the Holocene era. In most cases, the dominant species of the boreal forest completed their postglacial expansion to their current distributions only over the past 2000 years. So the ecology of the forest is very young, in comparison with forests in warmer climates. It might be expected that over subsequent millennia, with no climatic change, there could be a slow influx of new species to the boreal zone; however, the extreme climatic, edaphic, and disturbance characteristics of the area are likely to set insurmountable limits on this influx of diversity.« less

Carbon allocation and accumulation in conifers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gower, S.T.; Isebrands, J.G.; Sheriff, D.W.

1995-07-01

Forests cover approximately 33% of the land surface of the earth, yet they are responsible for 65% of the annual carbon (C) accumulated by all terrestrial biomes. In general, total C content and net primary production rates are greater for forests than for other biomes, but C budgets differ greatly among forests. Despite several decades of research on forest C budgets, there is still an incomplete understanding of the factors controlling C allocation. Yet, if we are to understand how changing global events such as land use, climate change, atmospheric N deposition, ozone, and elevated atmospheric CO{sub 2} affect themore » global C budget, a mechanistic understanding of C assimilation, partitioning, and allocation is necessary. The objective of this chapter is to review the major factors that influence C allocation and accumulation in conifer trees and forests. In keeping with the theme of this book, we will focus primarily on evergreen conifers. However, even among evergreen conifers, leaf, canopy, and stand-level C and nutrient allocation patterns differ, often as a function of leaf development and longevity. The terminology related to C allocation literature is often inconsistent, confusing and inadequate for understanding and integrating past and current research. For example, terms often used synonymously to describe C flow or movement include translocation, transport, distribution, allocation, partitioning, apportionment, and biomass allocation. A common terminology is needed because different terms have different meanings to readers. In this paper we use C allocation, partitioning, and accumulation according to the definitions of Dickson and Isebrands (1993). Partitioning is the process of C flow into and among different chemical, storage, and transport pools. Allocation is the distribution of C to different plant parts within the plant (i.e., source to sink). Accumulation is the end product of the process of C allocation.« less

Conifer density within lake catchments predicts fish mercury concentrations in remote subalpine lakes.

PubMed

Eagles-Smith, Collin A; Herring, Garth; Johnson, Branden; Graw, Rick

2016-05-01

Remote high-elevation lakes represent unique environments for evaluating the bioaccumulation of atmospherically deposited mercury through freshwater food webs, as well as for evaluating the relative importance of mercury loading versus landscape influences on mercury bioaccumulation. The increase in mercury deposition to these systems over the past century, coupled with their limited exposure to direct anthropogenic disturbance make them useful indicators for estimating how changes in mercury emissions may propagate to changes in Hg bioaccumulation and ecological risk. We evaluated mercury concentrations in resident fish from 28 high-elevation, sub-alpine lakes in the Pacific Northwest region of the United States. Fish total mercury (THg) concentrations ranged from 4 to 438 ng/g wet weight, with a geometric mean concentration (±standard error) of 43 ± 2 ng/g ww. Fish THg concentrations were negatively correlated with relative condition factor, indicating that faster growing fish that are in better condition have lower THg concentrations. Across the 28 study lakes, mean THg concentrations of resident salmonid fishes varied as much as 18-fold among lakes. We used a hierarchal statistical approach to evaluate the relative importance of physiological, limnological, and catchment drivers of fish Hg concentrations. Our top statistical model explained 87% of the variability in fish THg concentrations among lakes with four key landscape and limnological variables: catchment conifer density (basal area of conifers within a lake's catchment), lake surface area, aqueous dissolved sulfate, and dissolved organic carbon. Conifer density within a lake's catchment was the most important variable explaining fish THg concentrations across lakes, with THg concentrations differing by more than 400 percent across the forest density spectrum. These results illustrate the importance of landscape characteristics in controlling mercury bioaccumulation in fish. Published by Elsevier Ltd.

Morphological "primary homology" and expression of AG-subfamily MADS-box genes in pines, podocarps, and yews.

PubMed

Englund, Marie; Carlsbecker, Annelie; Engström, Peter; Vergara-Silva, Francisco

2011-01-01

The morphological variation among reproductive organs of extant gymnosperms is remarkable, especially among conifers. Several hypotheses concerning morphological homology between various conifer reproductive organs have been put forward, in particular in relation to the pine ovuliferous scale. Here, we use the expression patterns of orthologs of the ABC-model MADS-box gene AGAMOUS (AG) for testing morphological homology hypotheses related to organs of the conifer female cone. To this end, we first developed a tailored 3'RACE procedure that allows reliable amplification of partial sequences highly similar to gymnosperm-derived members of the AG-subfamily of MADS-box genes. Expression patterns of two novel conifer AG orthologs cloned with this procedure-namely PodAG and TgAG, obtained from the podocarp Podocarpus reichei and the yew Taxus globosa, respectively-are then further characterized in the morphologically divergent female cones of these species. The expression patterns of PodAG and TgAG are compared with those of DAL2, a previously discovered Picea abies (Pinaceae) AG ortholog. By treating the expression patterns of DAL2, PodAG, and TgAG as character states mapped onto currently accepted cladogram topologies, we suggest that the epimatium-that is, the podocarp female cone organ previously postulated as a "modified" ovuliferous scale-and the canonical Pinaceae ovuliferous scale can be legitimally conceptualized as "primary homologs." Character state mapping for TgAG suggests in turn that the aril of Taxaceae should be considered as a different type of organ. This work demonstrates how the interaction between developmental-genetic data and formal cladistic theory could fruitfully contribute to gymnosperm systematics. © 2011 Wiley Periodicals, Inc.

Measuring near infrared spectral reflectance changes from water stressed conifer stands with AIS-2

NASA Technical Reports Server (NTRS)

Riggs, George; Running, Steven W.

1987-01-01

Airborne Imaging Spectrometer-2 (AIS-2) data was acquired over two paired conifer stands for the purpose of detecting differences in spectral reflectance between stressed and natural canopies. Water stress was induced in a stand of Norway spruce and white pine by severing the sapwood near the ground. Water stress during the AIS flights was evaluated through shoot water potential and relative water content measurements. Preliminary analysis with raw AIS-2 data using SPAM indicates that there were small, inconsistent differences in absolute spectral reflectance in the near infrared 0.97 to 1.3 micron between the stressed and natural canopies.

AmeriFlux US-CZ3 Sierra Critical Zone, Sierra Transect, Sierran Mixed Conifer, P301

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goulden, Michael

This is the AmeriFlux version of the carbon flux data for the site US-CZ3 Sierra Critical Zone, Sierra Transect, Sierran Mixed Conifer, P301. Site Description - Half hourly data are available at https://www.ess.uci.edu/~california/. This site is one of four Southern Sierra Critical Zone Observatory flux towers operated along an elevation gradient (sites are USCZ1, USCZ2, USCZ3 and USCZ4). This site is a pine/fir forest; it historically experienced logging and wildfire, was thinned in ~2012, and experienced severe drought and ~20% canopy mortality in 2011-15.

Preliminary studies of elevated atmospheric CO/sub 2/ on conifers, May 1-December 30, 1985

DOE Office of Scientific and Technical Information (OSTI.GOV)

Helms, J.A.

1985-01-01

The original scope of work consisted of two parts: Intensive physiological studies of Pinus ponderosa seedlings and saplings that were continuously exposed to various levels of CO/sub 2/ and SO/sub 2/ in open-topped chambers. Site selection and preparation in anticipation of DOE approval of a proposed 5-year project on effects of long-term exposure of forest vegetation to enhanced CO/sub 2/. Establishment of 5 Nelder-type plots utilizing 5 western conifers to permit fundamental studies on the physiological bases of tree-to-tree competition. Because the DOE project was not funded, site selection was abandoned.

Explaining the distribution of breeding and dispersal syndromes in conifers

PubMed Central

Leslie, Andrew B.; Beaulieu, Jeremy M.; Crane, Peter R.; Donoghue, Michael J.

2013-01-01

The evolution of plants exhibiting different sexes, or dioecy, is correlated with a number of ecological and life-history traits such as woody growth form and animal-dispersed seeds, but the underlying causes of these associations are unclear. Previous work in seed plants has suggested that the evolution of fleshy cones or seeds may favour dioecy. In this study, we use a well-sampled molecular phylogeny of conifers to show that although dioecy and fleshiness strongly co-occur at the species level, this relationship has not resulted from numerous separate origins of this trait combination or from differential rates of diversification. Instead, we suggest that two character combinations—the ancestral dry-monoecious condition and the derived fleshy-dioecious condition—have persisted in conifers longer than other combinations over evolutionary time. The persistence of these trait combinations appears to reflect differences in the rate of successful transition into and out of these character states over time, as well as the geographical restriction of species with rare combinations and their consequent vulnerability to extinction. In general, we argue that such persistence explanations should be considered alongside ‘key innovation’ hypotheses in explaining the phylogenetic distribution of traits. PMID:24026822

The geographic selection mosaic for ponderosa pine and crossbills: a tale of two squirrels.

PubMed

Parchman, Thomas L; Benkman, Craig W

2008-02-01

Recent research demonstrates how the occurrence of a preemptive competitor (Tamiasciurus) gives rise to a geographic mosaic of coevolution for crossbills (Loxia) and conifers. We extend these studies by examining ponderosa pine (Pinus ponderosa), which produces more variable annual seed crops than the conifers in previous studies and often cooccurs with tree squirrels in the genus Sciurus that are less specialized than Tamiasciurus on conifer seed. We found no evidence of seed defenses evolving in response to selection exerted by S. aberti, which was apparently overwhelmed by selection resulting from inner bark feeding that caused many developing cones to be destroyed. In the absence of S. aberti, defenses directed at crossbills increased, favoring larger-billed crossbills and causing stronger reciprocal selection between crossbills and ponderosa pine. However, crossbill nomadism in response to cone crop fluctuations prevents localized reciprocal adaptation by crossbills. In contrast, evolution in response to S. griseus has incidentally defended cones against crossbills, limiting the geographic range of the interaction between crossbills and ponderosa pine. Our results suggest that annual resource variation does not prevent competitors from shaping selection mosaics, although such fluctuations likely prevent fine-scale geographic differentiation in predators that are nomadic in response to resource variability.

The use of multi-temporal Landsat Normalized Difference Vegetation Index (NDVI) data for mapping fuels in Yosemite National Park, USA

USGS Publications Warehouse

Van Wagtendonk, Jan W.; Root, Ralph R.

2003-01-01

The objective of this study was to test the applicability of using Normalized Difference Vegetation Index (NDVI) values derived from a temporal sequence of six Landsat Thematic Mapper (TM) scenes to map fuel models for Yosemite National Park, USA. An unsupervised classification algorithm was used to define 30 unique spectral-temporal classes of NDVI values. A combination of graphical, statistical and visual techniques was used to characterize the 30 classes and identify those that responded similarly and could be combined into fuel models. The final classification of fuel models included six different types: short annual and perennial grasses, tall perennial grasses, medium brush and evergreen hardwoods, short-needled conifers with no heavy fuels, long-needled conifers and deciduous hardwoods, and short-needled conifers with a component of heavy fuels. The NDVI, when analysed over a season of phenologically distinct periods along with ancillary data, can elicit information necessary to distinguish fuel model types. Fuels information derived from remote sensors has proven to be useful for initial classification of fuels and has been applied to fire management situations on the ground.

Variability of Cenococcum colonization and its ecophysiological significance for young conifers at alpine-treeline.

PubMed

Hasselquist, Niles; Germino, Matthew J; McGonigle, Terence; Smith, William K

2005-03-01

* Plants establishing in environments that are marginal for growth could be particularly sensitive to mycorrhizal associations. We investigated ectomycorrhizal colonization and its significance for young conifers growing at, or above, their normal limits for growth, in the alpine-treeline ecotone. * Colonization of seedlings (<1 yr old) and juveniles (2- to 10-yr-old) of Picea engelmannii and Abies lasiocarpa by Cenococcum geophilum was determined in a field study, and effects of Cenococcum on Picea seedling ecophysiology were investigated in a glasshouse. * Colonization by Cenococcum was c. 20-fold greater for juveniles than seedlings, and approximately 4-fold greater adjacent compared with approximately 7 m away from trees. Juveniles of Picea were more colonized at timberline than Abies, and the opposite relationship was observed in forest. Colonization enhanced seedling water potential, but not phosphorus concentrations or photosynthesis. * These landscape and age-dependent variations in colonization correspond well with known variations in conifer physiology and establishment near timberline. Facilitation of seedling establishment by older trees at alpine-treeline may include a below-ground, mycorrhizal component that complements previously reported effects of trees on the microclimate and ecophysiology of seedlings.

Leaf evolution in Southern Hemisphere conifers tracks the angiosperm ecological radiation

PubMed Central

Biffin, Ed; Brodribb, Timothy J.; Hill, Robert S.; Thomas, Philip; Lowe, Andrew J.

2012-01-01

The angiosperm radiation has been linked to sharp declines in gymnosperm diversity and the virtual elimination of conifers from the tropics. The conifer family Podocarpaceae stands as an exception with highest species diversity in wet equatorial forests. It has been hypothesized that efficient light harvesting by the highly flattened leaves of several podocarp genera facilitates persistence with canopy-forming angiosperms, and the angiosperm ecological radiation may have preferentially favoured the diversification of these lineages. To test these ideas, we develop a molecular phylogeny for Podocarpaceae using Bayesian-relaxed clock methods incorporating fossil time constraints. We find several independent origins of flattened foliage types, and that these lineages have diversified predominantly through the Cenozoic and therefore among canopy-forming angiosperms. The onset of sustained foliage flattening podocarp diversification is coincident with a declining diversification rate of scale/needle-leaved lineages and also with ecological and climatic transformations linked to angiosperm foliar evolution. We demonstrate that climatic range evolution is contingent on the underlying state for leaf morphology. Taken together, our findings imply that as angiosperms came to dominate most terrestrial ecosystems, competitive interactions at the foliar level have profoundly shaped podocarp geography and as a consequence, rates of lineage diversification. PMID:21653584

Explaining the distribution of breeding and dispersal syndromes in conifers.

PubMed

Leslie, Andrew B; Beaulieu, Jeremy M; Crane, Peter R; Donoghue, Michael J

2013-11-07

The evolution of plants exhibiting different sexes, or dioecy, is correlated with a number of ecological and life-history traits such as woody growth form and animal-dispersed seeds, but the underlying causes of these associations are unclear. Previous work in seed plants has suggested that the evolution of fleshy cones or seeds may favour dioecy. In this study, we use a well-sampled molecular phylogeny of conifers to show that although dioecy and fleshiness strongly co-occur at the species level, this relationship has not resulted from numerous separate origins of this trait combination or from differential rates of diversification. Instead, we suggest that two character combinations-the ancestral dry-monoecious condition and the derived fleshy-dioecious condition-have persisted in conifers longer than other combinations over evolutionary time. The persistence of these trait combinations appears to reflect differences in the rate of successful transition into and out of these character states over time, as well as the geographical restriction of species with rare combinations and their consequent vulnerability to extinction. In general, we argue that such persistence explanations should be considered alongside 'key innovation' hypotheses in explaining the phylogenetic distribution of traits.

Flotation preferentially selects saccate pollen during conifer pollination.

PubMed

Leslie, Andrew B

2010-10-01

• Among many species of living conifers the presence of pollen with air bladders (saccate pollen) is strongly associated with downward-facing ovules and the production of pollination drops. This combination of features enables saccate pollen grains captured in the pollination drop to float upwards into the ovule. Despite the importance of this mechanism in understanding reproduction in living conifers and in extinct seed plants with similar morphologies, experiments designed to test its effectiveness have yielded equivocal results. • In vitro and in vivo pollination experiments using saccate and nonsaccate pollen were performed using modeled ovules and two Pinus species during their natural pollination period. • Buoyant saccate pollen readily floated through aqueous droplets, separating these grains from nonbuoyant pollen and spores. Ovules that received saccate pollen, nonsaccate pollen or a mixture of both all showed larger amounts and higher proportions of saccate pollen inside ovules after drop secretion. • These results demonstrate that flotation is an effective mechanism of pollen capture and transport in gymnosperms, and suggest that the prevalence of saccate grains and downward-facing ovules in the evolutionary history of seed plants is a result of the widespread use of this mechanism.

Leaf evolution in Southern Hemisphere conifers tracks the angiosperm ecological radiation.

PubMed

Biffin, Ed; Brodribb, Timothy J; Hill, Robert S; Thomas, Philip; Lowe, Andrew J

2012-01-22

The angiosperm radiation has been linked to sharp declines in gymnosperm diversity and the virtual elimination of conifers from the tropics. The conifer family Podocarpaceae stands as an exception with highest species diversity in wet equatorial forests. It has been hypothesized that efficient light harvesting by the highly flattened leaves of several podocarp genera facilitates persistence with canopy-forming angiosperms, and the angiosperm ecological radiation may have preferentially favoured the diversification of these lineages. To test these ideas, we develop a molecular phylogeny for Podocarpaceae using Bayesian-relaxed clock methods incorporating fossil time constraints. We find several independent origins of flattened foliage types, and that these lineages have diversified predominantly through the Cenozoic and therefore among canopy-forming angiosperms. The onset of sustained foliage flattening podocarp diversification is coincident with a declining diversification rate of scale/needle-leaved lineages and also with ecological and climatic transformations linked to angiosperm foliar evolution. We demonstrate that climatic range evolution is contingent on the underlying state for leaf morphology. Taken together, our findings imply that as angiosperms came to dominate most terrestrial ecosystems, competitive interactions at the foliar level have profoundly shaped podocarp geography and as a consequence, rates of lineage diversification.

Leaf hydraulic capacity in ferns, conifers and angiosperms: impacts on photosynthetic maxima.

PubMed

Brodribb, Tim J; Holbrook, N Michele; Zwieniecki, Maciej A; Palma, Beatriz

2005-03-01

* The hydraulic plumbing of vascular plant leaves varies considerably between major plant groups both in the spatial organization of veins, as well as their anatomical structure. * Five conifers, three ferns and 12 angiosperm trees were selected from tropical and temperate forests to investigate whether the profound differences in foliar morphology of these groups lead to correspondingly profound differences in leaf hydraulic efficiency. * We found that angiosperm leaves spanned a range of leaf hydraulic conductance from 3.9 to 36 mmol m2 s-1 MPa-1, whereas ferns (5.9-11.4 mmol m-2 s-1 MPa-1) and conifers (1.6-9.0 mmol m-2 s-1 MPa-1) were uniformly less conductive to liquid water. Leaf hydraulic conductance (Kleaf) correlated strongly with stomatal conductance indicating an internal leaf-level regulation of liquid and vapour conductances. Photosynthetic capacity also increased with Kleaf, however, it became saturated at values of Kleaf over 20 mmol m-2 s-1 MPa-1. * The data suggest that vessels in the leaves of the angiosperms studied provide them with the flexibility to produce highly conductive leaves with correspondingly high photosynthetic capacities relative to tracheid-bearing species.

Plant hormones and ecophysiology of conifers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davies, W.J.

1995-07-01

Over the past 30 years, there have been very substantial fluctuations in the interests of plant scientists in the involvement of plant growth regulators in the control of physiology, growth, and development of plants. In the years following the identification of the five major classes of growth regulators and identification of other groups of compounds of somewhat more restricted interest, an enormous number of papers reported the effects of hormones applied externally to a very wide range of plants. During this period, it became very fashionable to compare effects of hormones with the effects of the environment on developmental andmore » physiological phenomena and to suggest a regulatory role for the hormone(s) in the processes under consideration. Ross et al. (1983) have published a very comprehensive survey of the effects of growth regulators applied externally to conifers, and even 10 years later, it is difficult to improve on what they have done. Nevertheless, in the light of recent changes in our understanding of how growth regulators may work, it is necessary to reexamine this field and ask what we really know about the involvement of growth regulators in the ecophysiology of conifers.« less

Effect of high CO{sub 2} on cold acclimation and deacclimation of three conifers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tinus, R.W.; Greer, D.H.; Robinson, L.A.

1995-12-31

Atmospheric CO{sub 2} levels are rising, and whether or not this leads to a climate change, high CO{sub 2} is known to have some direct effects of plants. One aspect that has only begun to be explored is possible effects on cold hardiness. Well adapted woody plants can tolerate the lowest temperatures to which they may be exposed at all times of the year. Every year temperate and boral woody plants must cold harden in a timely manner in autumn, become hardy enough to withstand the coldest winter temperatures, and not lose their hardiness prematurely in the spring. The authorsmore » objective was to determine the effect of elevated CO{sub 2} on cold acclimation and deacclimation of three commercially important conifers. Seedlings of three conifers were cold hardened and dehardened in growth rooms under 350 or 700 ppm CO{sub 2}. High CO{sub 2} had little effect on cold hardiness of radiata pine, but increased autumn and spring hardiness of Douglas-fir. High CO{sub 2} increased hardiness of ponderosa pine in autumn and decreased it in the spring.« less

Stomatal dynamics are limited by leaf hydraulics in ferns and conifers: results from simultaneous measurements of liquid and vapour fluxes in leaves.

PubMed

Martins, Samuel C V; McAdam, Scott A M; Deans, Ross M; DaMatta, Fábio M; Brodribb, Tim J

2016-03-01

Stomatal responsiveness to vapour pressure deficit (VPD) results in continuous regulation of daytime gas-exchange directly influencing leaf water status and carbon gain. Current models can reasonably predict steady-state stomatal conductance (gs ) to changes in VPD but the gs dynamics between steady-states are poorly known. Here, we used a diverse sample of conifers and ferns to show that leaf hydraulic architecture, in particular leaf capacitance, has a major role in determining the gs response time to perturbations in VPD. By using simultaneous measurements of liquid and vapour fluxes into and out of leaves, the in situ fluctuations in leaf water balance were calculated and appeared to be closely tracked by changes in gs thus supporting a passive model of stomatal control. Indeed, good agreement was found between observed and predicted gs when using a hydropassive model based on hydraulic traits. We contend that a simple passive hydraulic control of stomata in response to changes in leaf water status provides for efficient stomatal responses to VPD in ferns and conifers, leading to closure rates as fast or faster than those seen in most angiosperms. © 2015 John Wiley & Sons Ltd.

Quantifying thermal constraints on carbon and water fluxes in a mixed-conifer sky island ecosystem

NASA Astrophysics Data System (ADS)

Braun, Z.; Minor, R. L.; Potts, D. L.; Barron-Gafford, G. A.

2012-12-01

Western North American forests represent a potential, yet uncertain, sink for atmospheric carbon. Revealing how predicted climatic conditions of warmer temperatures and longer inter-storm periods of moisture stress might influence the carbon status of these forests requires a fuller understanding of plant functional responses to abiotic stress. While data related to snow dominated montane ecosystems has become more readily available to parameterize ecosystem function models, there is a paucity of data available for Madrean sky island mixed-conifer forests, which receive about one third of their precipitation from the North American Monsoon. Thus, we quantified ecophysiological responses to moisture and temperature stress in a Madrean mixed-conifer forest near Tucson, Arizona, within the footprint of the Mt. Bigelow Eddy Covariance Tower. In measuring a series of key parameters indicative of carbon and water fluxes within the dominant species across pre-monsoon and monsoon conditions, we were able to develop a broader understanding of what abiotic drivers are most restrictive to plant performance in this ecosystem. Within Pinus ponderosa (Ponderosa Pine), Pseudotsuga menziesii (Douglas Fir), and Pinus strobiformis (Southwestern White Pine) we quantified: (i) the optimal temperature (Topt) for maximum photosynthesis (Amax), (ii) the range of temperatures over which photosynthesis was at least 50% of Amax (Ω50), and (iii) each conifer's water use efficiency (WUE) to relate to the balance between carbon uptake and water loss in this high elevation semiarid ecosystem. Our findings support the prediction that photosynthesis decreases under high temperatures (>30°C) among the three species we measured, regardless of soil moisture status. However, monsoon moisture reduced sensitivity to temperature extremes and fluctuations (Ω50), which substantially magnified total photosynthetic productivity. In particular, wet conditions enhanced Amax the most dramatically for P. menziesii, elevating rates by 590%, while Ω50 grew most substantially for P. strobifomis (by 180%). Interspecific differences in temperature optima (Topt) elucidated possible species dominance predictions for seasonal and gradual temperature changes. P. menziesii may out-perform the pine species in the event that temperatures rise in conjunction with abundant summer moisture. However, if monsoon rains fail to accumulate, P. menziesii may remain at subsistence levels of photosynthesis. Together, these data will enable the parameterization of models to approximate the productivity and, ultimately, the composition of Madrean sky island mixe d-conifer forests under forecasted climate conditions of increased temperatures and more frequent drought.