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Sample records for continuum state cellular

  1. Continuum representations of cellular solids

    NASA Astrophysics Data System (ADS)

    Neilsen, M. K.

    1993-09-01

    Cellular materials consist of interconnected struts or plates which form cells. The struts or plates are constructed from a variety of metals, polymers, ceramics, and wood products. Cellular materials are often used in impact limiters for shipping containers to protect the contents from accidental impact events. These materials exhibit a variety of complex behavior when subjected to crushing loads. This research focuses on the development of continuum representations of cellular solids that can be used in the finite element analysis of shipping container accidents. A significant portion of this work is the development of a new methodology to relate localized deformations to appropriate constitutive descriptions. This methodology provides the insight needed to select constitutive descriptions for cellular solids that capture the localized deformations that are observed experimentally. Constitutive relations are developed for two different cellular materials, aluminum honeycomb and polyurethane foam. These constitutive relations are based on plasticity and continuum damage theories. Plasticity is used to describe the permanent deformation exhibited by both aluminum honeycomb and polyurethane foam. Continuum damage is needed to capture the change in elastic parameters due to cracking of the polyurethane cell wall materials. The new constitutive description of polyurethane foam is implemented in both static and dynamic finite element codes, and analytical and numerical predictions are compared with available experimental data.

  2. Continuum representations of cellular solids

    SciTech Connect

    Neilsen, M.K.

    1993-09-01

    Cellular materials consist of interconnected struts or plates which form cells. The struts or plates are constructed from a variety of metals, polymers, ceramics and wood products. Cellular materials are often used in impact limiters for shipping containers to protect the contents from accidental impact events. These materials exhibit a variety of complex behavior when subjected to crushing loads. This research focuses on the development of continuum representations of cellular solids that can be used in the finite element analysis of shipping container accidents. A significant portion of this work is the development of a new methodology to relate localized deformations to appropriate constitutive descriptions. This methodology provides the insight needed to select constitutive descriptions for cellular solids that capture the localized deformations that are observed experimentally. Constitutive relations are developed for two different cellular materials, aluminum honeycomb and polyurethane foam. These constitutive relations are based on plasticity and continuum damage theories. Plasticity is used to describe the permanent deformation exhibited by both aluminum honeycomb and polyurethane foam. Continuum damage is needed to capture the change in elastic parameters due to cracking of the polyurethane cell wall materials. The new constitutive description of polyurethane foam is implemented in both static and dynamic finite element codes, and analytical and numerical predictions are compared with available experimental data.

  3. Analysis of thermodiffusive cellular instabilities in continuum combustion fronts.

    PubMed

    Azizi, Hossein; Gurevich, Sebastian; Provatas, Nikolas

    2017-01-01

    We explore numerically the morphological patterns of thermodiffusive instabilities in combustion fronts with a continuum fuel source, within a range of Lewis numbers and ignition temperatures, focusing on the cellular regime. For this purpose, we generalize the recent model of Brailovsky et al. to include distinct process kinetics and reactant heterogeneity. The generalized model is derived analytically and validated with other established models in the limit of infinite Lewis number for zero-order and first-order kinetics. Cellular and dendritic instabilities are found at low Lewis numbers. These are studied using a dynamic adaptive mesh refinement technique that allows very large computational domains, thus allowing us to reduce finite-size effects that can affect or even preclude the emergence of these patterns. Our numerical linear stability analysis is consistent with the analytical results of Brailovsky et al. The distinct types of dynamics found in the vicinity of the critical Lewis number, ranging from steady-state cells to continued tip splitting and cell merging, are well described within the framework of thermodiffusive instabilities and are consistent with previous numerical studies. These types of dynamics are classified as "quasilinear" and characterized by low-amplitude cells that may be strongly affected by the mode selection mechanism and growth prescribed by the linear theory. Below this range of Lewis number, highly nonlinear effects become prominent and large-amplitude, complex cellular and seaweed dendritic morphologies emerge.

  4. Analysis of thermodiffusive cellular instabilities in continuum combustion fronts

    NASA Astrophysics Data System (ADS)

    Azizi, Hossein; Gurevich, Sebastian; Provatas, Nikolas

    2017-01-01

    We explore numerically the morphological patterns of thermodiffusive instabilities in combustion fronts with a continuum fuel source, within a range of Lewis numbers and ignition temperatures, focusing on the cellular regime. For this purpose, we generalize the recent model of Brailovsky et al. to include distinct process kinetics and reactant heterogeneity. The generalized model is derived analytically and validated with other established models in the limit of infinite Lewis number for zero-order and first-order kinetics. Cellular and dendritic instabilities are found at low Lewis numbers. These are studied using a dynamic adaptive mesh refinement technique that allows very large computational domains, thus allowing us to reduce finite-size effects that can affect or even preclude the emergence of these patterns. Our numerical linear stability analysis is consistent with the analytical results of Brailovsky et al. The distinct types of dynamics found in the vicinity of the critical Lewis number, ranging from steady-state cells to continued tip splitting and cell merging, are well described within the framework of thermodiffusive instabilities and are consistent with previous numerical studies. These types of dynamics are classified as "quasilinear" and characterized by low-amplitude cells that may be strongly affected by the mode selection mechanism and growth prescribed by the linear theory. Below this range of Lewis number, highly nonlinear effects become prominent and large-amplitude, complex cellular and seaweed dendritic morphologies emerge.

  5. Bound states in the continuum

    NASA Astrophysics Data System (ADS)

    Hsu, Chia Wei; Zhen, Bo; Stone, A. Douglas; Joannopoulos, John D.; Soljačić, Marin

    2016-09-01

    Bound states in the continuum (BICs) are waves that remain localized even though they coexist with a continuous spectrum of radiating waves that can carry energy away. Their very existence defies conventional wisdom. Although BICs were first proposed in quantum mechanics, they are a general wave phenomenon and have since been identified in electromagnetic waves, acoustic waves in air, water waves and elastic waves in solids. These states have been studied in a wide range of material systems, such as piezoelectric materials, dielectric photonic crystals, optical waveguides and fibres, quantum dots, graphene and topological insulators. In this Review, we describe recent developments in this field with an emphasis on the physical mechanisms that lead to BICs across seemingly very different materials and types of waves. We also discuss experimental realizations, existing applications and directions for future work.

  6. Continuum-continuum transitions between resonant states using the RABITT technique

    NASA Astrophysics Data System (ADS)

    Jiménez, A.; Argenti, L.; Martín, F.

    2014-04-01

    We present a study of radiative continuum-continuum transitions in helium in the presence of doubly-excited states by using the attosecond RABITT technique beyond the Single Active Electron approximation. On the one hand, transition amplitudes between correlated continuum states are calculated both by direct numerical solution of the time-dependent Schrodinger equation as well as with a two-photon perturbative model. The effect of autoionizing states on the sideband phaseshift is thus analyzed. On the other hand, we apply the soft-photon approximation to quantify the effects the IR probe intensity on the sideband non-resonant overtone components.

  7. Cellular automaton for chimera states

    NASA Astrophysics Data System (ADS)

    García-Morales, Vladimir

    2016-04-01

    A minimalistic model for chimera states is presented. The model is a cellular automaton (CA) which depends on only one adjustable parameter, the range of the nonlocal coupling, and is built from elementary cellular automata and the majority (voting) rule. This suggests the universality of chimera-like behavior from a new point of view: Already simple CA rules based on the majority rule exhibit this behavior. After a short transient, we find chimera states for arbitrary initial conditions, the system spontaneously splitting into stable domains separated by static boundaries, some synchronously oscillating and the others incoherent. When the coupling range is local, nontrivial coherent structures with different periodicities are formed.

  8. Rabi-split states broadened by a continuum

    SciTech Connect

    Maialle, M. Z.; Degani, M. H.; Madureira, J. R.

    2013-12-04

    In this work we theoretically investigate a Λ-like three-level system. Our model consists of a onedimensional quantum well with a nearby continuum. The Λ level structure is formed by the ground state (a valence band state) and two excited states (both in conduction band), one being a localized and the other a quasi-bound state which is interacting with the continuum. An infrared (IR) field is used to drive the excited states into dressed states creating Autler-Townes doublets. We solve the semiconductor Bloch equation, in real space and in time domain, to follow the interband optical excitation dynamics. The optical absorption and the photocurrent spectra are calculated for different potential barriers separating the well and the continuum. We show how this affects the Autler-Townes doublets since this is a possible way of changing the relationship between the IR Rabi frequency and the dephasing rates.

  9. Equation of State and Sound Velocities from Isotropic Continuum Mechanics.

    DTIC Science & Technology

    1986-10-01

    of state and the shear and longitudinal velocity to fifth order elastic constants. The resulting expressions are implicit in terms of the pressure...The methods of finite elasticity in continuum mechanics of homogeneous isotropic materials are used to obtain the pressure dependence of the equation

  10. Regulation of cellular chromatin state

    PubMed Central

    Mishra, Rakesh K; Dhawan, Jyotsna

    2010-01-01

    The identity and functionality of eukaryotic cells is defined not just by their genomic sequence which remains constant between cell types, but by their gene expression profiles governed by epigenetic mechanisms. Epigenetic controls maintain and change the chromatin state throughout development, as exemplified by the setting up of cellular memory for the regulation and maintenance of homeotic genes in proliferating progenitors during embryonic development. Higher order chromatin structure in reversibly arrested adult stem cells also involves epigenetic regulation and in this review we highlight common trends governing chromatin states, focusing on quiescence and differentiation during myogenesis. Together, these diverse developmental modules reveal the dynamic nature of chromatin regulation providing fresh insights into the role of epigenetic mechanisms in potentiating development and differentiation. PMID:20592864

  11. Breakup channels for C12 triple-α continuum states

    NASA Astrophysics Data System (ADS)

    Diget, C. Aa.; Barker, F. C.; Borge, M. J. G.; Boutami, R.; Dendooven, P.; Eronen, T.; Fox, S. P.; Fulton, B. R.; Fynbo, H. O. U.; Huikari, J.; Hyldegaard, S.; Jeppesen, H. B.; Jokinen, A.; Jonson, B.; Kankainen, A.; Moore, I.; Nieminen, A.; Nyman, G.; Penttilä, H.; Pucknell, V. F. E.; Riisager, K.; Rinta-Antila, S.; Tengblad, O.; Wang, Y.; Wilhelmsen, K.; Äystö, J.

    2009-09-01

    The triple-α-particle breakup of states in the triple-α continuum of C12 has been investigated by way of coincident detection of all three α particles of the breakup. The states have been fed in the β decay of N12 and B12, and the α particles measured using a setup that covers all of the triple-α phase space. Contributions from the breakup through the Be8(0+) ground state as well as other channels—interpreted as breakup through excited energies in Be8—have been identified. Spins and parities of C12 triple-α continuum states are deduced from the measured phase-space distributions for breakup through Be8 above the ground state by comparison to a fully symmetrized sequential R-matrix description of the breakup. At around 10 MeV in C12, the breakup is found to be dominated by 0+ strength breaking up through the ghost of the Be8(0+) ground state with L=0 angular momentum between the first emitted α particle and the intermediate Be8 nucleus. For C12 energies above the 12.7 MeV 1+ state, however, L=2 breakup of a C12 2+ state through the Be8(2+) excited state dominates. Furthermore, the possibility of a 2+ excited state in the 9-12 MeV region of C12 is investigated.

  12. Tamm-Hubbard surface states in the continuum.

    PubMed

    Longhi, S; Della Valle, G

    2013-06-12

    In the framework of the Bose-Hubbard model, we show that two-particle surface bound states embedded in the continuum (BIC) can be sustained at the edge of a semi-infinite one-dimensional tight-binding lattice for any infinitesimally-small impurity potential V at the lattice boundary. Such thresholdless surface states, which can be referred to as Tamm-Hubbard BIC states, exist provided that the impurity potential V is attractive (repulsive) and the particle-particle Hubbard interaction U is repulsive (attractive), i.e. for UV < 0.

  13. Exploring continuum structures with a pseudo-state basis

    SciTech Connect

    Lay, J. A.; Moro, A. M.; Arias, J. M.; Gomez-Camacho, J.

    2010-08-15

    The ability of a recently developed square-integrable discrete basis to represent the properties of the continuum of a two-body system is investigated. The basis is obtained performing a simple analytic local scale transformation to the harmonic oscillator basis. Scattering phase-shifts and the electric transition probabilities B(E1) and B(E2) have been evaluated for several potentials using the proposed basis. Both quantities are found to be in excellent agreement with the exact values calculated from the true scattering states. The basis has been applied to describe the projectile continuum in the {sup 6}He scattering by {sup 12}C and {sup 208}Pb targets at 240 MeV/nucleon and the {sup 11}Be scattering by {sup 12}C at 67 MeV/nucleon. The calculated breakup differential cross sections are found to be in very good agreement with the available experimental data for these reactions.

  14. Evolution of states in a continuum migration model

    NASA Astrophysics Data System (ADS)

    Kondratiev, Yuri; Kozitsky, Yuri

    2017-03-01

    The Markov evolution of states of a continuum migration model is studied. The model describes an infinite system of entities placed in R^d in which the constituents appear (immigrate) with rate b(x) and disappear, also due to competition. For this model, we prove the existence of the evolution of states μ _0 mapsto μ _t such that the moments μ _t(N_Λ ^n) , nin N, of the number of entities in compact Λ subset R^d remain bounded for all t>0 . Under an additional condition, we prove that the density of entities and the second correlation function remain point-wise bounded globally in time.

  15. Block versus continuum deformation in the Western United States

    USGS Publications Warehouse

    King, G.; Oppenheimer, D.; Amelung, F.

    1994-01-01

    The relative role of block versus continuum deformation of continental lithosphere is a current subject of debate. Continuous deformation is suggested by distributed seismicity at continental plate margins and by cumulative seismic moment sums which yield slip estimates that are less than estimates from plate motion studies. In contrast, block models are favored by geologic studies of displacement in places like Asia. A problem in this debate is a lack of data from which unequivocal conclusions may be reached. In this paper we apply the techniques of study used in regions such as the Alpine-Himalayan belt to an area with a wealth of instrumental data-the Western United States. By comparing plate rates to seismic moment release rates and assuming a typical seismogenic layer thickness of 15 km it appears that since 1850 about 60% of the Pacific-North America motion across the plate boundary in California and Nevada has occurred seismically and 40% aseismically. The San Francisco Bay area shows similar partitioning between seismic and aseismic deformation, and it can be shown that within the seismogenic depth range aseismic deformation is concentrated near the surface and at depth. In some cases this deformation can be located on creeping surface faults, but elsewhere it is spread over a several kilometer wide zone adjacent to the fault. These superficial creeping deformation zones may be responsible for the palaeomagnetic rotations that have been ascribed elsewhere to the surface expression of continuum deformation in the lithosphere. Our results support the dominant role of non-continuum deformation processes with the implication that deformation localization by strain softening must occur in the lower crust and probably the upper mantle. Our conclusions apply only to the regions where the data are good, and even within the Western United States (i.e., the Basin and Range) deformation styles remain poorly resolved. Nonetheless, we maintain that block motion is the

  16. Lasing action from photonic bound states in continuum

    NASA Astrophysics Data System (ADS)

    Kodigala, Ashok; Lepetit, Thomas; Gu, Qing; Bahari, Babak; Fainman, Yeshaiahu; Kanté, Boubacar

    2017-01-01

    In 1929, only three years after the advent of quantum mechanics, von Neumann and Wigner showed that Schrödinger’s equation can have bound states above the continuum threshold. These peculiar states, called bound states in the continuum (BICs), manifest themselves as resonances that do not decay. For several decades afterwards the idea lay dormant, regarded primarily as a mathematical curiosity. In 1977, Herrick and Stillinger revived interest in BICs when they suggested that BICs could be observed in semiconductor superlattices. BICs arise naturally from Feshbach’s quantum mechanical theory of resonances, as explained by Friedrich and Wintgen, and are thus more physical than initially realized. Recently, it was realized that BICs are intrinsically a wave phenomenon and are thus not restricted to the realm of quantum mechanics. They have since been shown to occur in many different fields of wave physics including acoustics, microwaves and nanophotonics. However, experimental observations of BICs have been limited to passive systems and the realization of BIC lasers has remained elusive. Here we report, at room temperature, lasing action from an optically pumped BIC cavity. Our results show that the lasing wavelength of the fabricated BIC cavities, each made of an array of cylindrical nanoresonators suspended in air, scales with the radii of the nanoresonators according to the theoretical prediction for the BIC mode. Moreover, lasing action from the designed BIC cavity persists even after scaling down the array to as few as 8-by-8 nanoresonators. BIC lasers open up new avenues in the study of light-matter interaction because they are intrinsically connected to topological charges and represent natural vector beam sources (that is, there are several possible beam shapes), which are highly sought after in the fields of optical trapping, biological sensing and quantum information.

  17. Continuum-state and bound-state β--decay rates of the neutron

    NASA Astrophysics Data System (ADS)

    Faber, M.; Ivanov, A. N.; Ivanova, V. A.; Marton, J.; Pitschmann, M.; Serebrov, A. P.; Troitskaya, N. I.; Wellenzohn, M.

    2009-09-01

    For the β--decay of the neutron we analyze the continuum-state and bound-state decay modes. We calculate the decay rates, the electron energy spectrum for the continuum-state decay mode, and angular distributions of the decay probabilities for the continuum-state and bound-state decay modes. The theoretical results are obtained for the new value for the axial coupling constant gA=1.2750(9), obtained recently by H. Abele [Prog. Part. Nucl. Phys. 60, 1 (2008)] from the fit of the experimental data on the coefficient of the correlation of the neutron spin and the electron momentum of the electron energy spectrum of the continuum-state decay mode. We take into account the contribution of radiative corrections and the scalar and tensor weak couplings. The calculated angular distributions of the probabilities of the bound-state decay modes of the polarized neutron can be used for the experimental measurements of the bound-state β--decays into the hyperfine states with total angular momentum F=1 and scalar and tensor weak coupling constants.

  18. Strain-Induced Localized States Within the Matrix Continuum of Self-Assembled Quantum Dots

    SciTech Connect

    Popescu, V.; Bester, G.; Zunger, A.

    2009-07-01

    Quantum dot-based infrared detectors often involve transitions from confined states of the dot to states above the minimum of the conduction band continuum of the matrix. We discuss the existence of two types of resonant states within this continuum in self-assembled dots: (i) virtual bound states, which characterize square wells even without strain and (ii) strain-induced localized states. The latter emerge due to the appearance of 'potential wings' near the dot, related to the curvature of the dots. While states (i) do couple to the continuum, states (ii) are sheltered by the wings, giving rise to sharp absorption peaks.

  19. Quantum secure direct communication of digital and analog signals using continuum coherent states

    NASA Astrophysics Data System (ADS)

    Guerra, Antônio Geovan de Araújo Holanda; Rios, Francisco Franklin Sousa; Ramos, Rubens Viana

    2016-11-01

    In this work, we present optical schemes for secure direct quantum communication of digital and analog signals using continuum coherent states and frequency-dependent phase modulation. The main advantages of the proposed schemes are that they do not use entangled states and they can be implemented with today technology. The theory of quantum interference of continuum coherent state is described, and the optical setups for secure direct communication are presented and their securities are discussed.

  20. Landau-Zener-Stueckelberg Physics with a Singular Continuum of States.

    PubMed

    Basko, D M

    2017-01-06

    This Letter addresses the dynamical quantum problem of a driven discrete energy level coupled to a semi-infinite continuum whose density of states has a square-root-type singularity, such as states of a free particle in one dimension or quasiparticle states in a BCS superconductor. The system dynamics is strongly affected by the quantum-mechanical repulsion between the discrete level and the singularity, which gives rise to a bound state, suppresses the decay into the continuum, and can produce Stueckelberg oscillations. This quantum coherence effect may limit the performance of mesoscopic superconducting devices, such as the quantum electron turnstile.

  1. Landau-Zener-Stueckelberg Physics with a Singular Continuum of States

    NASA Astrophysics Data System (ADS)

    Basko, D. M.

    2017-01-01

    This Letter addresses the dynamical quantum problem of a driven discrete energy level coupled to a semi-infinite continuum whose density of states has a square-root-type singularity, such as states of a free particle in one dimension or quasiparticle states in a BCS superconductor. The system dynamics is strongly affected by the quantum-mechanical repulsion between the discrete level and the singularity, which gives rise to a bound state, suppresses the decay into the continuum, and can produce Stueckelberg oscillations. This quantum coherence effect may limit the performance of mesoscopic superconducting devices, such as the quantum electron turnstile.

  2. Uniqueness of continuum one-dimensional Gibbs states for slowly decaying interactions

    SciTech Connect

    Klein, D.

    1986-04-01

    We consider one-dimensional grand-canonical continuum Gibbs states corresponding to slowly decaying, superstable, many-body interactions. Absence of phase transitions, in the sense of uniqueness of the tempered Gibbs state, is proved for interactions with an Nth body hardcore for arbitrarily large N.

  3. Accidental bound states in the continuum in an open Sinai billiard

    NASA Astrophysics Data System (ADS)

    Pilipchuk, A. S.; Sadreev, A. F.

    2017-02-01

    The fundamental mechanism of the bound states in the continuum is the full destructive interference of two resonances when two eigenlevels of the closed system are crossing. There is, however, a wide class of quantum chaotic systems which display only avoided crossings of eigenlevels. As an example of such a system we consider the Sinai billiard coupled with two semi-infinite waveguides. We show that notwithstanding the absence of degeneracy bound states in the continuum occur due to accidental decoupling of the eigenstates of the billiard from the waveguides.

  4. Excited state absorption spectrum of chlorophyll a obtained with white-light continuum.

    PubMed

    De Boni, L; Correa, D S; Pavinatto, F J; dos Santos, D S; Mendonça, C R

    2007-04-28

    The study of excited state properties of chlorophyll a is a subject of foremost interest, given that it plays important roles in biological process and has also been proposed for applications in photonics. This work reports on the excited state absorption spectrum of chlorophyll a solution from 460 to 700 nm, obtained through the white-light continuum Z-scan technique. Saturation of absorption was observed due to the ground state depletion, induced by the white-light continuum region that is resonant with the Q band of chlorophyll a. The authors also observed reverse saturation of absorption related to the excitation from the first excited state to a higher energy level for wavelengths below 640 nm. An energy-level diagram, based on the electronic states of chlorophyll a, was employed to interpret their results, revealing that more states than the ones related to the Q and B bands participate in the excited state absorption of this molecule.

  5. Fano resonances in photonic crystal slabs near optical bound states in the continuum

    NASA Astrophysics Data System (ADS)

    Blanchard, Cédric; Hugonin, Jean-Paul; Sauvan, Christophe

    2016-10-01

    Photonic crystal slabs are able to support optical bound states in the continuum. The latter are eigenmodes of the structure that are truly guided (no radiation leakage) despite the fact that they lie above the light cone within the continuum of radiation modes. Such peculiar states can be viewed as modes with an infinite quality factor Q . Therefore, the question of the behavior of Fano resonances, as optogeometrical parameters are tuned close to optical bound states in the continuum, is of importance for applications of photonic crystal slabs with ultrahigh Q factors. We study theoretically the reflection and transmission of a photonic crystal slab close to an optical bound state in the continuum with a phenomenological approach involving the poles and zeros of the scattering matrix. In particular, we derive a general relation valid for asymmetric structures that gives the position of a pole in the complex plane as a function of the positions of the zeros. We provide closed-form expressions for the reflection and transmission. The proposed phenomenological approach is validated through rigorous numerical calculations.

  6. Quantum dynamics of Ne -Br2 vibrational predissociation: The role of continuum resonances as doorway states

    NASA Astrophysics Data System (ADS)

    García-Vela, A.; Janda, K. C.

    2006-01-01

    Wave-packet simulations of the Ne -Br2(B,υ') vibrational predissociation dynamics in the range υ'=16-29 are reported. The aim is to interpret recent time-dependent pump-probe experiments [Cabrera et al., J. Chem. Phys. 123, 054311 (2005)]. Good agreement is found between the calculated and the experimental lifetimes corresponding to decay of the Ne -Br2(B,υ') initial state and to appearance of Br2(B,υ<υ') products. The simulations show that up to υ'˜22 the dynamics is dominated by direct predissociation, while for higher υ' levels an indirect intramolecular vibrational relaxation mechanism of dissociation becomes increasingly important. Such a mechanism occurs via coupling of the initial state in the υ' vibrational manifold to nearly degenerate resonances embedded in the continuum of the lower υ <υ' manifolds, which act as intermediate doorway states to dissociation. The role of the intermediate resonances manifests itself in multiexponential behavior and oscillations in the time-dependent population curves associated with the initial complex state, the final product states, and the Ne -Br2(B,υ<υ') intermediate complexes. Analysis of the Ne -Br2(B,υ<υ') intermediate population shows that the continuum resonances are supported by centrifugal barriers involving excitation of the internal rotation of the complex. We find that the coupling between the intermediate state resonances and the continuum product state wave functions extend to Ne -Br2 distances greater than 15Å. In the light of the results, a structure of the spectrum of continuum resonances is suggested and discussed.

  7. Controlling Directionality and Dimensionality of Radiation by Perturbing Separable Bound States in the Continuum

    PubMed Central

    Rivera, Nicholas; Hsu, Chia Wei; Zhen, Bo; Buljan, Hrvoje; Joannopoulos, John D.; Soljačić, Marin

    2016-01-01

    A bound state in the continuum (BIC) is an unusual localized state that is embedded in a continuum of extended states. Here, we present the general condition for BICs to arise from wave equation separability. Then we show that by exploiting perturbations of certain symmetry such BICs can be turned into resonances that radiate with a tailorable directionality and dimensionality. Using this general framework, we construct new examples of separable BICs and resonances that can exist in optical potentials for ultracold atoms, photonic systems, and systems described by tight binding. Such resonances with easily reconfigurable radiation allow for applications such as the storage and release of waves at a controllable rate and direction, as well systems that switch between different dimensions of confinement. PMID:27641540

  8. Building the Coverage Continuum: The Role of State Medicaid Directors and Insurance Commissioners.

    PubMed

    Ario, Joel; Bachrach, Deborah

    2017-02-01

    Issue: The Affordable Care Act has expanded coverage to 20 million newly insured individuals, split between state Medicaid programs and commercially insured marketplaces, with limited integration between the two. The seamless continuum of coverage envisioned by the law is central to achieving the full potential of the Affordable Care Act, but it remains an elusive promise. Goals: To examine the historical and cultural differences between state Medicaid agencies and insurance departments that contribute to this lack of coordination. Findings and Conclusions: Historical and cultural differences must be overcome to ensure continuing access to coverage and care. The authors present two opportunities for insurance and Medicaid officials to work together to advance the continuum of coverage: alignment of regulations for insurers participating in both markets and collaboration on efforts to reform the health care delivery system.

  9. Excited-state polarizabilities of solvated molecules using cubic response theory and the polarizable continuum model

    NASA Astrophysics Data System (ADS)

    Ferrighi, Lara; Frediani, Luca; Ruud, Kenneth

    2010-01-01

    The theory and an implementation of the solvent contribution to the cubic response function for the polarizable continuum model for multiconfigurational self-consistent field wave functions is presented. The excited-state polarizability of benzene, para-nitroaniline, and nitrobenzene has been obtained from the double residue of the cubic response function calculated in the presence of an acetonitrile and dioxane solvent. The calculated excited-state polarizabilities are compared to results obtained from the linear response function of the explicitly optimized excited states.

  10. Bound states in the continuum in open quantum billiards with a variable shape

    SciTech Connect

    Sadreev, Almas F.; Bulgakov, Evgeny N.; Rotter, Ingrid

    2006-06-15

    We show the existence of bound states in the continuum (BICs) in quantum billiards (QBs) that are opened by attaching single-channel leads to them. They may be observed by varying an external parameter continuously, e.g., the shape of the QB. At some values of the parameter, resonance states with vanishing decay width (the BICs) occur. They are localized almost completely in the interior of the closed system. The phenomenon is shown analytically to exist in the simplest case of a two level QB and is complemented by numerical calculations for a real QB.

  11. Treatment of continuum in nuclear reactions involving weakly bound systems. A simple model to test different prescriptions describing the coupling to continuum states

    SciTech Connect

    Dasso, C. H.; Vitturi, A.

    2009-03-04

    We exploit a model describing the break-up of weakly-bound nuclei that can be used as a laboratory for testing different prescriptions that have been advanced in the literature to take into account the near-by presence of continuum states. In the model we follow the evolution of a single particle wave function in one dimension, initially bound by a Woods-Saxon type potential and then perturbed by a time- and position-dependent external field. Proper choices of this potential can simulate the effect of the interaction between reaction partners in a nuclear collision. These processes generate inelastic excitation probabilities that--distributed over the bound and continuum states of the system--lead to either a partial or a total fragmentation of the final wave function. The comparison with the exact calculations shows that standard coupled channel descriptions based on discretization of the continuum can be accurate only when a proper choice is made of the number of discrete states, of the energy mesh and of the energy cutoff. This may imply, even in simplified cases, the use of a rather large (and unpracticable) number of channels. The use of a more restricted number of channels may lead to misleading results.

  12. Comment on 'Bound-state eigenenergy outside and inside the continuum for unstable multilevel systems'

    SciTech Connect

    Bulgakov, E. N.; Sadreev, A. F.; Rotter, I.

    2007-06-15

    We discuss the solution of the basic equations of the N-level Friedrichs model by using the Feshbach projection operator (FPO) technique and consider the relation between bound states in the continuum (BICs) and form factors. In the FPO formalism, the BICs are eigenstates of a non-Hermitian Hamilton operator with vanishing decay width. The wave function of a BIC is localized inside the system. On the basis of the FPO solutions we discuss the mechanism to yield a BIC at every coupling strength between system and environment. We relate our results to those given by Miyamoto [Phys. Rev. A 72, 063405 (2005)].

  13. In-situ measurement of bound states in the continuum in photonic crystal slabs (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Kalchmair, Stefan; Gansch, Roman; Genevet, Patrice; Zederbauer, Tobias; MacFarland, Donald; Detz, Hermann; Andrews, Aaron Maxwell; Schrenk, Werner; Strasser, Gottfried; Capasso, Federico; Loncar, Marko

    2016-04-01

    Photonic crystal slabs have been subject to research for more than a decade, yet the existence of bound states in the radiation continuum (BICs) in photonic crystals has been reported only recently [1]. A BIC is formed when the radiation from all possible channels interferes destructively, causing the overall radiation to vanish. In photonic crystals, BICs are the result of accidental phase matching between incident, reflected and in-plane waves at seemingly random wave vectors [2]. While BICs in photonic crystals have been discussed previously using reflection measurements, we reports for the first time in-situ measurements of the bound states in the continuum in photonic crystal slabs. By embedding a photodetector into a photonic crystal slab we were able to directly observe optical BICs. The photonic crystal slabs are processed from a GaAs/AlGaAs quantum wells heterostructure, providing intersubband absorption in the mid-infrared wavelength range. The generated photocurrent is collected via doped contact layers on top and bottom of the suspended photonic crystal slab. We were mapping out the photonic band structure by rotating the device and by acquiring photocurrent spectra every 5°. Our measured photonic bandstructure revealed several BICs, which was confirmed with a rigorously coupled-wave analysis simulation. Since coupling to external fields is suppressed, the photocurrent measured by the photodetector vanishes at the BIC wave vector. To confirm the relation between the measured photocurrent and the Q-factor we used temporal coupled mode theory, which yielded an inverse proportional relation between the photocurrent and the out-coupling loss from the photonic crystal. Implementing a plane wave expansion simulation allowed us to identify the corresponding photonic crystal modes. The ability to directly measure the field intensity inside the photonic crystal presents an important milestone towards integrated opto-electronic BIC devices. Potential

  14. Critical field enhancement of asymptotic optical bound states in the continuum

    PubMed Central

    Yoon, Jae Woong; Song, Seok Ho; Magnusson, Robert

    2015-01-01

    We study spectral singularities and critical field enhancement factors associated with embedded photonic bound states in subwavelength periodic Si films. Ultrahigh-Q resonances supporting field enhancement factor exceeding 108 are obtained in the spectral vicinity of exact embedded eigenvalues in spite of deep surface modulation and vertical asymmetry of the given structure. Treating relations between the partial resonance Q and field enhancement factors with an analytical coupled-mode model, we derive a general strategy to maximize the field enhancement associated with these photonic bound states in the presence of material dissipation. The analytical expression for the field enhancement quantitatively agrees with rigorous numerical calculations. Therefore, our results provide a general knowledge for designing practical resonance elements based on optical bound states in the continuum in various applications. PMID:26673548

  15. Formation mechanism of guided resonances and bound states in the continuum in photonic crystal slabs

    PubMed Central

    Gao, Xingwei; Hsu, Chia Wei; Zhen, Bo; Lin, Xiao; Joannopoulos, John D.; Soljačić, Marin; Chen, Hongsheng

    2016-01-01

    We develop a formalism, based on the mode expansion method, to describe the guided resonances and bound states in the continuum (BICs) in photonic crystal slabs with one-dimensional periodicity. This approach provides analytic insights to the formation mechanisms of these states: the guided resonances arise from the transverse Fabry–Pérot condition, and the divergence of the resonance lifetimes at the BICs is explained by a destructive interference of radiation from different propagating components inside the slab. We show BICs at the center and on the edge of the Brillouin zone protected by symmetry, BICs at generic wave vectors not protected by symmetry, and the annihilation of BICs at low-symmetry wave vectors. PMID:27557882

  16. Ultrasensitive optical absorption in graphene based on bound states in the continuum

    PubMed Central

    Zhang, Mingda; Zhang, Xiangdong

    2015-01-01

    We have designed a sphere-graphene-slab structure so that the electromagnetic wave can be well confined in the graphene due to the formation of a bound state in a continuum (BIC) of radiation modes. Based on such a bound state, we have realized strong optical absorption in the monolayer graphene. Such a strong optical absorption exhibits many advantages. It is ultrasensitive to the wavelength because the Q factor of the absorption peak can be more than 2000. By taking suitable BICs, the selective absorption for S and P waves has not only been realized, but also all-angle absorption for the S and P waves at the same time has been demonstrated. We have also found that ultrasensitive strong absorptions can appear at any wavelength from mid-infrared to far-infrared band. These phenomena are very beneficial to biosensing, perfect filters and waveguides. PMID:25652437

  17. Formation mechanism of guided resonances and bound states in the continuum in photonic crystal slabs

    DOE PAGES

    Gao, Xingwei; Hsu, Chia Wei; Zhen, Bo; ...

    2016-08-25

    We develop a formalism, based on the mode expansion method, to describe the guided resonances and bound states in the continuum (BICs) in photonic crystal slabs with one-dimensional periodicity. This approach provides analytic insights to the formation mechanisms of these states: the guided resonances arise from the transverse Fabry–Pérot condition, and the divergence of the resonance lifetimes at the BICs is explained by a destructive interference of radiation from different propagating components inside the slab. As a result, we show BICs at the center and on the edge of the Brillouin zone protected by symmetry, BICs at generic wave vectorsmore » not protected by symmetry, and the annihilation of BICs at low-symmetry wave vectors.« less

  18. Formation mechanism of guided resonances and bound states in the continuum in photonic crystal slabs

    SciTech Connect

    Gao, Xingwei; Hsu, Chia Wei; Zhen, Bo; Lin, Xiao; Joannopoulos, John D.; Soljačić, Marin; Chen, Hongsheng

    2016-08-25

    We develop a formalism, based on the mode expansion method, to describe the guided resonances and bound states in the continuum (BICs) in photonic crystal slabs with one-dimensional periodicity. This approach provides analytic insights to the formation mechanisms of these states: the guided resonances arise from the transverse Fabry–Pérot condition, and the divergence of the resonance lifetimes at the BICs is explained by a destructive interference of radiation from different propagating components inside the slab. As a result, we show BICs at the center and on the edge of the Brillouin zone protected by symmetry, BICs at generic wave vectors not protected by symmetry, and the annihilation of BICs at low-symmetry wave vectors.

  19. Large enhancement of fully resonant sum-frequency generation through quantum control via continuum states

    SciTech Connect

    Popov, A.K.; Kimberg, V.V.; George, Thomas F.

    2004-04-01

    A theory of quantum control of short-wavelength sum-frequency generation, which employs the continuum states, is developed. The proposed scheme employs all-resonant coupling and trade-off optimization of the accompanying constructive and destructive quantum interference effects in the lower-order and higher-order polarizations controlled by the overlap of two autoionizinglike laser-induced continuum structures. The scheme does not rely on adiabatic passage, coherent population trapping or maximum atomic coherence as a means to facilitate maximum output. The opportunities for manipulating transparency of the medium and refractive index for the fundamental and generated radiations, as well as nonlinear polarization in the multiple-resonant medium, are shown. This opens the feasibility of creating frequency-tunable narrowband filters, polarization rotators, and dispersive elements for vacuum ultraviolet radiation. The features specific for quantum interference in Doppler-broadened media are investigated. The feasibility of almost complete conversion of long-wavelength fundamental radiation into generated short-wavelength radiation, and of a dramatic decrease in the intensity of required fundamental radiations, is shown.

  20. Combined discrete particle and continuum model predicting solid-state fermentation in a drum fermentor.

    PubMed

    Schutyser, M A I; Briels, W J; Boom, R M; Rinzema, A

    2004-05-20

    The development of mathematical models facilitates industrial (large-scale) application of solid-state fermentation (SSF). In this study, a two-phase model of a drum fermentor is developed that consists of a discrete particle model (solid phase) and a continuum model (gas phase). The continuum model describes the distribution of air in the bed injected via an aeration pipe. The discrete particle model describes the solid phase. In previous work, mixing during SSF was predicted with the discrete particle model, although mixing simulations were not carried out in the current work. Heat and mass transfer between the two phases and biomass growth were implemented in the two-phase model. Validation experiments were conducted in a 28-dm3 drum fermentor. In this fermentor, sufficient aeration was provided to control the temperatures near the optimum value for growth during the first 45-50 hours. Several simulations were also conducted for different fermentor scales. Forced aeration via a single pipe in the drum fermentors did not provide homogeneous cooling in the substrate bed. Due to large temperature gradients, biomass yield decreased severely with increasing size of the fermentor. Improvement of air distribution would be required to avoid the need for frequent mixing events, during which growth is hampered. From these results, it was concluded that the two-phase model developed is a powerful tool to investigate design and scale-up of aerated (mixed) SSF fermentors.

  1. Modeling electron dynamics coupled to continuum states in finite volumes with absorbing boundaries

    NASA Astrophysics Data System (ADS)

    De Giovannini, Umberto; Larsen, Ask Hjorth; Rubio, Angel

    2015-03-01

    Absorbing boundaries are frequently employed in real-time propagation of the Schrödinger equation to remove spurious reflections and efficiently emulate outgoing boundary conditions. These conditions are a fundamental ingredient for the calculation of observables involving infinitely extended continuum states in finite volumes. In the literature, several boundary absorbers have been proposed. They mostly fall into three main families: mask function absorbers, complex absorbing potentials, and exterior complex-scaled potentials. To date none of the proposed absorbers is perfect, and all present a certain degree of reflections. Characterization of such reflections is thus a critical task with strong implications for time-dependent simulations of atoms and molecules. We introduce a method to evaluate the reflection properties of a given absorber and present a comparison of selected samples for each family of absorbers. Further, we discuss the connections between members of each family and show how the same reflection curves can be obtained with very different absorption schemes.

  2. Self-localized states for electron transfer in nonlocal continuum deformable media

    NASA Astrophysics Data System (ADS)

    Cisneros-Ake, Luis A.

    2016-08-01

    We consider the problem of electron transport in a deformable continuum medium subjected to an external harmonic substrate potential. We then consider the quasi-stationary state of the full problem to find a Gross-Pitaevskii type equation with a nonlocal external potential, which is solved by variational and numerical means (considered as the exact solution) to find the parameter conditions for the existence of self-localized solutions. The variational approach predicts a threshold on the on-site or nonlocality parameter where localized solutions cease to exist from the Non-Linear Schrödinger soliton limit. A numerical continuation of stationary state solutions in the corresponding discrete system is used to confirm the prediction of the turning value in the on-site term. We finally study the full stationary state and make use of an approximation, proposed by Briedis et al. [17], for the nonlocal term, corresponding to strong nonlocalities, to find analytic expressions for self-localized states in terms of the series solutions of a nonlinear modified Bessel equation.

  3. RNA: State Memory and Mediator of Cellular Phenotype

    PubMed Central

    Kim, Junhyong; Eberwine, James

    2010-01-01

    It has become increasingly clear that the genome is dynamic and exquisitely sensitive, changing expression patterns in response to age, environmental stimuli and pharmacological and physiological manipulations. Similarly, cellular phenotype, traditionally viewed as a stable end-state, should be viewed as versatile and changeable. The phenotype of a cell is better defined as a “homeostatic phenotype” implying plasticity resulting from a dynamically-changing yet characteristic pattern of gene/protein expression. A stable change in phenotype is the result of the movement of a cell between different multi-dimensional identity spaces. Here, we describe a key driver of this transition and the stabilizer of phenotype: the relative abundances of the cellular RNAs. We argue that the quantitative state of RNA can be likened to a state memory, that when transferred between cells, alters the phenotype in a predictable manner. PMID:20382532

  4. Dynamic stress-strain states for metal foams using a 3D cellular model

    NASA Astrophysics Data System (ADS)

    Zheng, Zhijun; Wang, Changfeng; Yu, Jilin; Reid, Stephen R.; Harrigan, John J.

    2014-12-01

    Dynamic uniaxial impact behaviour of metal foams using a 3D cell-based finite element model is examined. At sufficiently high loading rates, these materials respond by forming ‘shock or consolidation waves' (Tan et al., 2005a, 2005b). However, the existing dynamic experimental methods have limitations in fully informing this behaviour, particularly for solving boundary/initial value problems. Recently, the problem of the shock-like response of an open-cell foam has been examined by Barnes et al. (2014) using the Hugoniot-curve representations. The present study is somewhat complementary to that approach and additionally aims to provide insight into the ‘rate sensitivity' mechanism applicable to cellular materials. To assist our understanding of the ‘loading rate sensitivity' behaviour of cellular materials, a virtual ‘test' method based on the direct impact technique is explored. Following a continuum representation of the response, the strain field calculation method is employed to determine the local strains ahead of and behind the resulting ‘shock front'. The dynamic stress-strain states in the densification stage are found to be different from the quasi-static ones. It is evident that the constitutive behaviour of the cellular material is deformation-mode dependent. The nature of the ‘rate sensitivity' revealed for cellular materials in this paper is different from the strain-rate sensitivity of dense metals. It is shown that the dynamic stress-strain states behind a shock front of the cellular material lie on a unique curve and each point on the curve corresponds to a particular ‘impact velocity', referred as the velocity upstream of the shock in this study. The dynamic stress-strain curve is related to a layer-wise collapse mode, whilst the equivalent quasi-static curve is related to a random shear band collapse mode. The findings herein are aimed at improving the experimental test techniques used to characterise the rate-sensitivity behaviour

  5. Theory and experimental consequences of generation of a pair of photon-dressed discrete states by external electromagnetic fields in the atomic or molecular continuum

    NASA Astrophysics Data System (ADS)

    Lami, Alessandro; Rahman, Naseem K.

    1986-01-01

    It is shown theoretically that double resonance through the continuum can be utilized to produce two photon-dressed discrete states embedded in the continuum. The significance of creating such a pair of states is discussed, along with its experimental consequences. Especially important are quantum beats of population, which offer novel spectroscopic opportunities.

  6. Lifetime measurements of 17C excited states and three-body and continuum effects

    DOE PAGES

    Smalley, D.; Iwasaki, H.; Navratil, P.; ...

    2015-12-18

    We studied transition rates for the lowest 1/2+ and 5/2+ excited states of 17C through lifetime measurements with the GRETINA array using the recoil-distance method. The present measurements provide a model-independent determination of transition strengths giving the values of B(M1;1/2+ → 3/2+g.s.) = 1.04+0.03–0.12 × 10–2μ2N and B(M1;5/2+ → 3/2+g.s.) = 7.12+1.27–0.96 × 10–2μ2N. The quenched M1 transition strength for the 1/2+ → 3/2+g.s. transition, with respect to the 5/2+ → 3/2+g.s. transition, has been confirmed with greater precision. Furthermore, the current data are compared to importance-truncated no-core shell model calculations addressing effects due to continuum and three-body forces.

  7. Stress-free states of continuum dislocation fields: Rotations, grain boundaries, and the Nye dislocation density tensor

    NASA Astrophysics Data System (ADS)

    Limkumnerd, Surachate; Sethna, James P.

    2007-06-01

    We derive general relations between grain boundaries, rotational deformations, and stress-free states for the mesoscale continuum Nye dislocation density tensor. Dislocations generally are associated with long-range stress fields. We provide the general form for dislocation density fields whose stress fields vanish. We explain that a grain boundary (a dislocation wall satisfying Frank’s formula) has vanishing stress in the continuum limit. We show that the general stress-free state can be written explicitly as a (perhaps continuous) superposition of flat Frank walls. We show that the stress-free states are also naturally interpreted as configurations generated by a general spatially dependent rotational deformation. Finally, we propose a least-squares definition for the spatially dependent rotation field of a general (stressful) dislocation density field.

  8. Quantum state transfer through noisy quantum cellular automata

    NASA Astrophysics Data System (ADS)

    Avalle, Michele; Genoni, Marco G.; Serafini, Alessio

    2015-05-01

    We model the transport of an unknown quantum state on one dimensional qubit lattices by means of a quantum cellular automata (QCA) evolution. We do this by first introducing a class of discrete noisy dynamics, in the first excitation sector, in which a wide group of classical stochastic dynamics is embedded within the more general formalism of quantum operations. We then extend the Hilbert space of the system to accommodate a global vacuum state, thus allowing for the transport of initial on-site coherences besides excitations, and determine the dynamical constraints that define the class of noisy QCA in this subspace. We then study the transport performance through numerical simulations, showing that for some instances of the dynamics perfect quantum state transfer is attainable. Our approach provides one with a natural description of both unitary and open quantum evolutions, where the homogeneity and locality of interactions allow one to take into account several forms of quantum noise in a plausible scenario.

  9. Immunotherapy in allergy and cellular tests: state of art.

    PubMed

    Chirumbolo, Salvatore

    2014-01-01

    The basophil activation test (BAT) is an in vitro assay where the activation of basophils upon exposure to various IgE-challenging molecules is measured by flow cytometry. It is a cellular test able to investigate basophil behavior during allergy and allergy immunotherapy. A panoply of critical issues and suggestive advances have rendered this assay a promising yet puzzling tool to endeavor a full comprehension of innate immunity of allergy desensitization and manage allergen or monoclonal anti-IgE therapy. In this review a brief state of art of BAT in immunotherapy is described focusing onto the analytical issue pertaining BAT performance in allergy specific therapy.

  10. Aspects of conical intersections: Dynamics, bound states embedded in the continuum and short-lived electronic states

    NASA Astrophysics Data System (ADS)

    Cederbaum, Lorenz

    2007-03-01

    Conical intersections are omnipresent in polyatomic molecules and their presence gives rise to the most severe breakdown of the Born-Oppenheimer approximation. Several general aspects of conical intersections and of the dynamics through them will be addressed. Particular attention will be paid to the question what happens to the potential energy surfaces if the electronic states are metastable. In addition, it is shown that nuclear dynamics on coupled potential surface can lead to bound states embedded in the continuum. Non-Born-Oppenheimer effects are responsible for the binding of these states. Once the Born-Oppenheimer approximation is introduced, these states at best become resonances which decay via potential tunnelling. The tunnelling is completely suppressed by the coupling between the electronic states. Another important issue which will be touched upon is dynamics in the presence of conical intersections in macrosystems. Here, the number of modes is extremely large and, nevertheless, their impact close to the intersections cannot be neglected. It is shown that effective modes can be derived which reproduce exactly the short-time dynamics of the whole macrosystem at low cost. Numerical examples are given. References: H. K"oppel, W. Domcke and L.S. Cederbaum, Adv.Chem.Phys. 57, 59 (1984) G.A. Worth and L.S. Cederbaum, Annu-Rev.Phys.Chem. 55, 127 (2004) L.S. Cederbaum, R.S. Friedman, V.M Ryaboy and N. Moiseyev, Phys.Rev.Lett. 90, 013001 (2003) S. Feuerbacher, T. Sommerfeld and L.S. Cederbaum, J.Chem.Phys. 120, 3201 (2004) L.S. Cederbaum, E. Gindensperger and I. Burghardt, Phys.Rev.Lett. 94, 113003 (2005)

  11. Towards an integrated primary and secondary HIV prevention continuum for the United States: a cyclical process model

    PubMed Central

    Horn, Tim; Sherwood, Jennifer; Remien, Robert H; Nash, Denis; Auerbach, Judith D.

    2016-01-01

    Introduction Every new HIV infection is preventable and every HIV-related death is avoidable. As many jurisdictions around the world endeavour to end HIV as an epidemic, missed HIV prevention and treatment opportunities must be regarded as public health emergencies, and efforts to quickly fill gaps in service provision for all people living with and vulnerable to HIV infection must be prioritized. Discussion We present a novel, comprehensive, primary and secondary HIV prevention continuum model for the United States as a conceptual framework to identify key steps in reducing HIV incidence and improving health outcomes among those vulnerable to, as well as those living with, HIV infection. We further discuss potential approaches to address gaps in data required for programme planning, implementation and evaluation across the elements of the HIV prevention continuum. Conclusions Our model conceptualizes opportunities to monitor and quantify primary HIV prevention efforts and, importantly, illustrates the interplay between an outcomes-oriented primary HIV prevention process and the HIV care continuum to move aggressively forward in reaching ambitious reductions in HIV incidence. To optimize the utility of this outcomes-oriented HIV prevention continuum, a key gap to be addressed includes the creation and increased coordination of data relevant to HIV prevention across sectors. PMID:27863535

  12. Continuum of depressive and manic mixed states in patients with bipolar disorder: quantitative measurement and clinical features.

    PubMed

    Swann, Alan C; Steinberg, Joel L; Lijffijt, Marijn; Moeller, Gerard F

    2009-10-01

    Bipolar mixed states combine depressive and manic features, presenting diagnostic and treatment challenges and reflecting a severe form of the illness. DSM-IV criteria for a mixed state require combined depressive and manic syndromes, but a range of mixed states has been described clinically. A unified definition of mixed states would be valuable in understanding their diagnosis, mechanism and treatment implications. We investigated the manner in which depressive and manic features combine to produce a continuum of mixed states. In 88 subjects with bipolar disorder (DSM-IV), we evaluated symptoms and clinical characteristics, and compared depression-based, mania-based, and other published definitions of mixed states. We developed an index of the extent to which symptoms were mixed (Mixed State Index, MSI) and characterized its relationship to clinical state. Predominately manic and depressive mixed states using criteria from recent literature, as well as Kraepelinian mixed states, had similar symptoms and MSI scores. Anxiety correlated significantly with depression scores in manic subjects and with mania scores in depressed subjects. Discriminant function analysis associated mixed states with symptoms of hyperactivity and negative cognitions, but not subjective depressive or elevated mood. High MSI scores were associated with severe course of illness. For depressive or manic episodes, characteristics of mixed states emerged with two symptoms of the opposite polarity. This was a cross-sectional study. Mixed states appear to be a continuum. An index of the degree to which depressive and manic symptoms combine appears useful in identifying and characterizing mixed states. We propose a depressive or manic episode with three or more symptoms of the opposite polarity as a parsimonious definition of a mixed state.

  13. Fano effect and bound state in continuum in electron transport through an armchair graphene nanoribbon with line defect

    PubMed Central

    2013-01-01

    Electron transport properties in an armchair graphene nanoribbon are theoretically investigated by considering the presence of line defect. It is found that the line defect causes the abundant Fano effects and bound state in continuum (BIC) in the electron transport process, which are tightly dependent on the width of the nanoribbon. By plotting the spectra of the density of electron states of the line defect, we see that the line defect induces some localized quantum states around the Dirac point and that the different localizations of these states lead to these two kinds of transport results. Next, the Fano effect and BIC phenomenon are detailedly described via the analysis about the influence of the structure parameters. According to the numerical results, we propose such a structure to be a promising candidate for graphene nanoswitch. PACS 81.05.Uw, 71.55.-i, 73.23.-b, 73.25.+i PMID:23870061

  14. Fano effect and bound state in continuum in electron transport through an armchair graphene nanoribbon with line defect.

    PubMed

    Gong, Wei-Jiang; Sui, Xiao-Yan; Wang, Yan; Yu, Guo-Dong; Chen, Xiao-Hui

    2013-07-22

    : Electron transport properties in an armchair graphene nanoribbon are theoretically investigated by considering the presence of line defect. It is found that the line defect causes the abundant Fano effects and bound state in continuum (BIC) in the electron transport process, which are tightly dependent on the width of the nanoribbon. By plotting the spectra of the density of electron states of the line defect, we see that the line defect induces some localized quantum states around the Dirac point and that the different localizations of these states lead to these two kinds of transport results. Next, the Fano effect and BIC phenomenon are detailedly described via the analysis about the influence of the structure parameters. According to the numerical results, we propose such a structure to be a promising candidate for graphene nanoswitch. PACS: 81.05.Uw, 71.55.-i, 73.23.-b, 73.25.+i.

  15. Search for saddle-point electrons using the continuum-distorted-wave eikonal initial-state model

    SciTech Connect

    McCartney, M.

    1995-08-01

    The continuum-distorted-wave eikonal initial-state (CDWEIS) model is used to study the ionization of hydrogen by protons of energy 10--500 keV. Ejected electron spectra are presented and discussed in the context of the saddle-point mechanism. The behavior of the ejected electron spectrum as the charge of the incident projectile is varied is also considered. It is concluded that within its range of validity, CDWEIS does not provide any evidence of the existence of saddle-point electrons.

  16. Combining the GW formalism with the polarizable continuum model: A state-specific non-equilibrium approach.

    PubMed

    Duchemin, Ivan; Jacquemin, Denis; Blase, Xavier

    2016-04-28

    We have implemented the polarizable continuum model within the framework of the many-body Green's function GW formalism for the calculation of electron addition and removal energies in solution. The present formalism includes both ground-state and non-equilibrium polarization effects. In addition, the polarization energies are state-specific, allowing to obtain the bath-induced renormalisation energy of all occupied and virtual energy levels. Our implementation is validated by comparisons with ΔSCF calculations performed at both the density functional theory and coupled-cluster single and double levels for solvated nucleobases. The present study opens the way to GW and Bethe-Salpeter calculations in disordered condensed phases of interest in organic optoelectronics, wet chemistry, and biology.

  17. Spin polarized bound states in the continuum in open Aharonov-Bohm rings with the Rashba spin-orbit interaction.

    PubMed

    Bulgakov, Evgeny N; Sadreev, Almas F

    2016-07-06

    We consider the trapping of electrons with a definite spin polarization by bound states in the continuum (BSC) in the open Aharonov-Bohm rings in the presence of the Rashba spin-orbit interaction (RSOI). Neglecting the Zeeman term we show the existence of BSCs in the one-dimensional ring when the eigenstates of the closed ring are doubly degenerate. With account of the Zeeman term BSCs occur only at the points of threefold degeneracy. The BSCs are found in the parametric space of flux and RSOI strength in close pairs with opposite spin polarization. Thereby the spin polarization of electrons transmitted through the ring can be altered by minor variation of magnetic or electric field at the vicinity of these pairs. Numerical simulations of the two-dimensional open ring show similar results for the BSCs. Encircling the BSC points in the parametric space of the flux and the RSOI constant gives rise to a geometric phase.

  18. Spin polarized bound states in the continuum in open Aharonov-Bohm rings with the Rashba spin-orbit interaction

    NASA Astrophysics Data System (ADS)

    Bulgakov, Evgeny N.; Sadreev, Almas F.

    2016-07-01

    We consider the trapping of electrons with a definite spin polarization by bound states in the continuum (BSC) in the open Aharonov-Bohm rings in the presence of the Rashba spin-orbit interaction (RSOI). Neglecting the Zeeman term we show the existence of BSCs in the one-dimensional ring when the eigenstates of the closed ring are doubly degenerate. With account of the Zeeman term BSCs occur only at the points of threefold degeneracy. The BSCs are found in the parametric space of flux and RSOI strength in close pairs with opposite spin polarization. Thereby the spin polarization of electrons transmitted through the ring can be altered by minor variation of magnetic or electric field at the vicinity of these pairs. Numerical simulations of the two-dimensional open ring show similar results for the BSCs. Encircling the BSC points in the parametric space of the flux and the RSOI constant gives rise to a geometric phase.

  19. Rydberg and continuum states of the HeH+ molecular ion: Variational R -matrix and multichannel quantum defect theory calculations

    NASA Astrophysics Data System (ADS)

    Bouhali, I.; Bezzaouia, S.; Telmini, M.; Jungen, Ch.

    2016-08-01

    Variational ab initio R -matrix theory combined with generalized multichannel quantum defect theory is used to calculate singly excited Rydberg states of the hydrohelium molecular ion, HeH+, for Σ,3+1,Π,31,Δ,31,Φ,31, and Γ,31 symmetry. Bound levels are calculated for n values up to n ≈10 , and continuum states up to ≈3 eV above the HeH2 + threshold. The calculations span the range of internuclear distances R from 1 to 5 bohrs. The present work follows a preliminary study on the Δ,31 states of HeH+ [Bouhali, Bezzaouia, Telmini, and Jungen, EPJ Web Conf. 84, 04004 (2015), 10.1051/epjconf/20158404004] which was also based on R -matrix theory. Further—although limited to rather small R values—the present work extends the recent ab initio computations of Jungen and Jungen [Mol. Phys. 113, 2333 (2015), 10.1080/00268976.2015.1040094] to higher excitation energies which are not accessible to standard quantum-chemical methods. Where a comparison with the calculations of Jungen and Jungen and other older results can be made, namely for n ≤5 , very good agreement with previous ab initio results is obtained.

  20. Coherent-state path integrals in the continuum: The SU(2) case

    NASA Astrophysics Data System (ADS)

    Kordas, G.; Kalantzis, D.; Karanikas, A. I.

    2016-09-01

    We define the time-continuous spin coherent-state path integral in a way that is free from inconsistencies. The proposed definition is used to reproduce known exact results. Such a formalism opens new possibilities for applying approximations with improved accuracy and can be proven useful in a great variety of problems where spin Hamiltonians are used.

  1. The Teacher Development Continuum in the United States and China: Summary of a Workshop

    ERIC Educational Resources Information Center

    Ferreras, Ana; Olson, Steve

    2010-01-01

    In 1999, Liping Ma published her book "Knowing and Teaching Elementary Mathematics: Teachers' Understanding of Fundamental Mathematics in the United States and China," which probed the kinds of knowledge that elementary school teachers need to convey mathematical concepts and procedures effectively to their students. Later that year,…

  2. A study of gamma ray burst continuum properties presnting evidence for two spectral states in bursts

    NASA Technical Reports Server (NTRS)

    Pendleton, Geoffrey N.; Paciesas, William S.; Mallozzi, Robert S.; Koshut, Tom M.; Fishman, Gerald J.; Meegan, Charles A.; Wilson, Robert B.; Harmon, B. A.; Lestrade, J. P.

    1994-01-01

    Evidence is presented for the existence of two spectral states contributing simultaneously to the total spectrum observed in many gamma-ray bursts (GRB's). An ensemble of 120 GRB's measured by BATSE were studied, using 4 channel spectral data, to determine in which bursts the spectral states can be most effectively resolved. The technique of summing the low intensity spectra together to get an average spectrum allows for precise characterization of the average low intensity spectral behavior. The 4 and 16 channel spectra obtained by the BATSE Large Area Detectors (LAD's) are analyzed using a model-independent spectral inversion technique. The results of these analyses applied to an individual burst are discussed in detail.

  3. Lindblad-driven discretized leads for nonequilibrium steady-state transport in quantum impurity models: Recovering the continuum limit

    NASA Astrophysics Data System (ADS)

    Schwarz, F.; Goldstein, M.; Dorda, A.; Arrigoni, E.; Weichselbaum, A.; von Delft, J.

    2016-10-01

    The description of interacting quantum impurity models in steady-state nonequilibrium is an open challenge for computational many-particle methods: the numerical requirement of using a finite number of lead levels and the physical requirement of describing a truly open quantum system are seemingly incompatible. One possibility to bridge this gap is the use of Lindblad-driven discretized leads (LDDL): one couples auxiliary continuous reservoirs to the discretized lead levels and represents these additional reservoirs by Lindblad terms in the Liouville equation. For quadratic models governed by Lindbladian dynamics, we present an elementary approach for obtaining correlation functions analytically. In a second part, we use this approach to explicitly discuss the conditions under which the continuum limit of the LDDL approach recovers the correct representation of thermal reservoirs. As an analytically solvable example, the nonequilibrium resonant level model is studied in greater detail. Lastly, we present ideas towards a numerical evaluation of the suggested Lindblad equation for interacting impurities based on matrix product states. In particular, we present a reformulation of the Lindblad equation, which has the useful property that the leads can be mapped onto a chain where both the Hamiltonian dynamics and the Lindblad driving are local at the same time. Moreover, we discuss the possibility to combine the Lindblad approach with a logarithmic discretization needed for the exploration of exponentially small energy scales.

  4. Steady-state analysis of a continuum model for super-infection.

    PubMed

    Ermentrout, Bard; Hastings, Stuart

    2009-09-01

    A large system of N strains of parasite and a single host is analyzed as a function of the degree of virulence in the strains when there is super-infection between hosts (more virulent strains can infect hosts that are already infected) and within-host transition between strains that is neutral. When this small amount of local switching is allowed, steady-state solutions converge to a continuous distribution as the number of strains increases. The resulting nonlinear-nonautonomous integro-differential equation is reduced to a fourth order boundary value problem (BVP) and the existence of positive solutions is proven. The methods here and associated BVP allow for a thorough exploration of parameter space for this class of models.

  5. Lifetime measurements of 17C excited states and three-body and continuum effects

    SciTech Connect

    Smalley, D.; Iwasaki, H.; Navratil, P.; Roth, R.; Langhammer, J.; Bader, V. M.; Bazin, D.; Barryman, J. S.; Campbell, C. M.; Dohet-Eraly, J.; Fallon, P.; Gade, A.; Langer, C.; Lemasson, A.; Macchiavelli, A. O.; Morse, C.; Parker, J.; Quaglioni, S.; Recchia, F.; Stroberg, S. R.; Wiesshaar, D.; Whitmore, K.; Wimmer, K.; Brown, B. A.

    2015-12-18

    We studied transition rates for the lowest 1/2+ and 5/2+ excited states of 17C through lifetime measurements with the GRETINA array using the recoil-distance method. The present measurements provide a model-independent determination of transition strengths giving the values of B(M1;1/2+ → 3/2+g.s.) = 1.04+0.03–0.12 × 10–2μ2N and B(M1;5/2+ → 3/2+g.s.) = 7.12+1.27–0.96 × 10–2μ2N. The quenched M1 transition strength for the 1/2+ → 3/2+g.s. transition, with respect to the 5/2+ → 3/2+g.s. transition, has been confirmed with greater precision. Furthermore, the current data are compared to importance-truncated no-core shell model calculations addressing effects due to continuum and three-body forces.

  6. On the accuracy of the general, state-specific polarizable-continuum model for the description of correlated ground- and excited states in solution.

    PubMed

    Mewes, Jan-Michael; Herbert, John M; Dreuw, Andreas

    2017-01-04

    Equilibrium and non-equilibrium formulations of the state-specific polarizable-continuum model (SS-PCM) are evaluated in combination with correlated ground- and excited-state densities provided by the algebraic-diagrammatic construction method (ADC) for the polarization propagator via the computationally efficient intermediate-state representation (ISR) formalism. Since the influence of the SS-PCM onto quantum-chemical method is naturally limited to the presence of the apparent surface charges in the one-electron Hamiltonian and hence fully contained in the polarized MOs, the herein presented solvent model can be combined with all implemented orders and variants of ADC. Employing ADC/SS-PCM, the symmetric, ionized dimers of neon, ethene and nitromethane are investigated. Their broken-symmetry wavefunctions exhibit a low-lying charge-transfer state that is symmetry-equivalent to the ground state. This curious though ultimately artificial feature is convenient as it allows for a direct comparison of ADC/SS-PCM for the CT state to the Møller-Plesset/PCM description of the ground state. The agreement down to 0.02 eV for a wide range of dielectric constants validates the ADC/SS-PCM approach. Eventually, the relaxed potential-energy surfaces of the ground and lowest excited states of 4-(N,N)-dimethylaminobenzonitrile in cyclohexane and acetonitrile are computed, and it is demonstrated that the ADC(2)/SS-PCM approach affords excellent agreement with experimental fluorescence data. Only at the ADC(3) level of theory, however, the experimentally observed solvent-dependent dual fluorescence can be explained.

  7. Numerical Study of Rarefied Hypersonic Flow Interacting with a Continuum Jet. Degree awarded by Pennsylvania State Univ., Aug. 1999

    NASA Technical Reports Server (NTRS)

    Glass, Christopher E.

    2000-01-01

    An uncoupled Computational Fluid Dynamics-Direct Simulation Monte Carlo (CFD-DSMC) technique is developed and applied to provide solutions for continuum jets interacting with rarefied external flows. The technique is based on a correlation of the appropriate Bird breakdown parameter for a transitional-rarefied condition that defines a surface within which the continuum solution is unaffected by the external flow-jet interaction. The method is applied to two problems to assess and demonstrate its validity; one of a jet interaction in the transitional-rarefied flow regime and the other in the moderately rarefied regime. Results show that the appropriate Bird breakdown surface for uncoupling the continuum and non-continuum solutions is a function of a non-dimensional parameter relating the momentum flux and collisionality between the two interacting flows. The correlation is exploited for the simulation of a jet interaction modeled for an experimental condition in the transitional-rarefied flow regime and the validity of the correlation is demonstrated. The uncoupled technique is also applied to an aerobraking flight condition for the Mars Global Surveyor spacecraft with attitude control system jet interaction. Aerodynamic yawing moment coefficients for cases without and with jet interaction at various angles-of-attack were predicted, and results from the present method compare well with values published previously. The flow field and surface properties are analyzed in some detail to describe the mechanism by which the jet interaction affects the aerodynamics.

  8. Cellular stress induces a protective sleep-like state in C. elegans.

    PubMed

    Hill, Andrew J; Mansfield, Richard; Lopez, Jessie M N G; Raizen, David M; Van Buskirk, Cheryl

    2014-10-20

    Sleep is recognized to be ancient in origin, with vertebrates and invertebrates experiencing behaviorally quiescent states that are regulated by conserved genetic mechanisms. Despite its conservation throughout phylogeny, the function of sleep remains debated. Hypotheses for the purpose of sleep include nervous-system-specific functions such as modulation of synaptic strength and clearance of metabolites from the brain, as well as more generalized cellular functions such as energy conservation and macromolecule biosynthesis. These models are supported by the identification of synaptic and metabolic processes that are perturbed during prolonged wakefulness. It remains to be seen whether perturbations of cellular homeostasis in turn drive sleep. Here we show that under conditions of cellular stress, including noxious heat, cold, hypertonicity, and tissue damage, the nematode Caenorhabditis elegans engages a behavioral quiescence program. The stress-induced quiescent state displays properties of sleep and is dependent on the ALA neuron, which mediates the conserved soporific effect of epidermal growth factor (EGF) ligand overexpression. We characterize heat-induced quiescence in detail and show that it is indeed dependent on components of EGF signaling, providing physiological relevance to the behavioral effects of EGF family ligands. We find that after noxious heat exposure, quiescence-defective animals show elevated expression of cellular stress reporter genes and are impaired for survival, demonstrating the benefit of stress-induced behavioral quiescence. These data provide evidence that cellular stress can induce a protective sleep-like state in C. elegans and suggest that a deeply conserved function of sleep is to mitigate disruptions of cellular homeostasis.

  9. Unified ab initio approach to bound and unbound states: No-core shell model with continuum and its application to 7He

    DOE PAGES

    Baroni, Simone; Navratil, Petr; Quaglioni, Sofia

    2013-03-26

    In this study, we introduce a unified approach to nuclear bound and continuum states based on the coupling of the no-core shell model (NCSM), a bound-state technique, with the no-core shell model/resonating group method (NCSM/RGM), a nuclear scattering technique. This new ab initio method, no-core shell model with continuum (NCSMC), leads to convergence properties superior to either NCSM or NCSM/RGM while providing a balanced approach to different classes of states. In the NCSMC, the ansatz for the many-nucleon wave function includes (i) a square-integrable A-nucleon component expanded in a complete harmonic oscillator basis and (ii) a binary-cluster component with asymptoticmore » boundary conditions that can properly describe weakly bound states, resonances, and scattering. The Schrödinger equation is transformed into a system of coupled-channel integral-differential equations that we solve using a modified microscopic R-matrix formalism within a Lagrange mesh basis. We demonstrate the usefulness of the approach by investigating the unbound 7He nucleus.« less

  10. Continuum Nuclear Structure via

    NASA Astrophysics Data System (ADS)

    Templon, Jeffrey A.

    1993-01-01

    Nuclear spectra are generally well-understood for excitation energies below the particle-emission threshold. Above this threshold, excited states decay preferentially by emission of nucleons or nucleon clusters. These resonant excitations are short-lived, producing continuum spectra of overlapping states accompanied by non-resonant, probe -dependent background processes. The resonant excitations' properties are difficult to deduce from these spectra. Many important advances in nuclear physics require understanding of such excitations. (e,e^' X) coincidence experiments have established the utility of angular correlation measurements of particle (X) emitted by decaying resonances for continuum studies. However, electron-induced reactions excite only a subset of the total nuclear response. Hadronic probes are necessary for a complete study. This dissertation describes a (p,p^' X) coincidence experiment, the first at intermediate energies where microscopic theories apply. The reaction's utility was investigated and applied to ^{12 }C. The experiment was performed using a 156 MeV polarized proton beam. A magnetic spectrometer was used to detect scattered protons. An array of eight silicon-detector telescopes was constructed and used to measure the angular correlation of charged particles (X). Inclusive (p,p ^') and exclusive (p,p ^' X) data were acquired simultaneously. The momentum transfer range (0.6<= q<= 1.2 fm^{-1}) was covered in three spectrometer angle settings. The excitation energy range spanned the region from sharp states to quasifree processes. Analyzing powers and cross sections were measured for both inclusive and exclusive data. A simple reaction model was developed which suggested a Legendre-polynomial series should describe the sigma(theta_{X}) data. The model relates the polynomial coefficients to nuclear structure information. A result of this work is that this series was found to satisfactorily describe the data and provided new information about

  11. Assessment of Cellular Redox State Using NAD(P)H Fluorescence Intensity and Lifetime

    PubMed Central

    Blacker, Thomas S.; Berecz, Tunde; Duchen, Michael R.; Szabadkai, Gyorgy

    2017-01-01

    NADH and NADPH are redox cofactors, primarily involved in catabolic and anabolic metabolic processes respectively. In addition, NADPH plays an important role in cellular antioxidant defence. In live cells and tissues, the intensity of their spectrally-identical autofluorescence, termed NAD(P)H, can be used to probe the mitochondrial redox state, while their distinct enzyme-binding characteristics can be used to separate their relative contributions to the total NAD(P)H intensity using fluorescence lifetime imaging microscopy (FLIM). These protocols allow differences in metabolism to be detected between cell types and altered physiological and pathological states. PMID:28286806

  12. Interpretation of the X(3872) as a charmonium state plus an extra component due to the coupling to the meson-meson continuum

    NASA Astrophysics Data System (ADS)

    Ferretti, J.; Galatà, G.; Santopinto, E.

    2013-07-01

    We present a quark model calculation of the charmonium spectrum with self-energy corrections due to the coupling to the meson-meson continuum. The bare masses used in the calculation are computed within the relativized quark model by Godfrey and Isgur. The strong decay widths of 3S, 2P, 1D, and 2D cc¯ states are also calculated, to set the values of the 3P0 pair-creation model's parameters we use to compute the vertex functions of the loop integrals. Finally, the nature of the X(3872) resonance is analyzed and the main possibilities (cc¯ state or DD¯* molecule) are discussed. According to our results, the X(3872) is compatible with the meson χc1(2P), with JPC=1++, and is thus interpreted as a cc¯ core plus higher Fock components due to the coupling to the meson-meson continuum. These JPC=1++ quantum numbers are in agreement with the experimental results found by the LHCb collaboration. In our view, the X(3872)'s mass is lower than the quark model's predictions because of self-energy shifts.

  13. Reduced native state stability in crowded cellular environment due to protein-protein interactions

    PubMed Central

    Harada, Ryuhei; Tochio, Naoya; Kigawa, Takanori; Sugita, Yuji; Feig, Michael

    2013-01-01

    The effect of cellular crowding environments on protein structure and stability is a key issue in molecular and cellular biology. The classical view of crowding emphasizes the volume exclusion effect that generally favors compact, native states. Here, results from molecular dynamics simulations and NMR experiments show that protein crowders may destabilize native states via protein-protein interactions. In the model system considered here, mixtures of villin head piece and protein G at high concentrations, villin structures become increasingly destabilized upon increasing crowder concentrations. The denatured states observed in the simulation involve partial unfolding as well as more subtle conformational shifts. The unfolded states remain overall compact and only partially overlap with unfolded ensembles at high temperature and in the presence of urea. NMR measurements on the same systems confirm structural changes upon crowding based on changes of chemical shifts relative to dilute conditions. An analysis of protein-protein interactions and energetic aspects suggests the importance of enthalpic and solvation contributions to the crowding free energies that challenge an entropic-centered view of crowding effects. PMID:23402619

  14. The transition between immune and disease states in a cellular automaton model of clonal immune response

    NASA Astrophysics Data System (ADS)

    Bezzi, Michele; Celada, Franco; Ruffo, Stefano; Seiden, Philip E.

    1997-02-01

    In this paper we extend the Celada-Seiden (CS) model of the humoral immune response to include infections virus and killer T cells (cellular response). The model represents molecules and cells with bitstrings. The response of the system to virus involves a competition between the ability of the virus to kill the host cells and the host's ability to eliminate the virus. We find two basins of attraction in the dynamics of this system, one is identified with disease and the other with the immune state. There is also an oscillating state that exists on the border of these two stable states. Fluctuations in the population of virus or antibody can end the oscillation and drive the system into one of the stable states. The introduction of mechanisms of cross-regulation between the two responses can bias the system towards one of them. We also study a mean field model, based on coupled maps, to investigate virus-like infections. This simple model reproduces the attractors for average populations observed in the cellular automaton. All the dynamical behavior connected to spatial extension is lost, as is the oscillating feature. Thus the mean field approximation introduced with coupled maps destroys oscillations.

  15. Brain cancer incidence trends in relation to cellular telephone use in the United States.

    PubMed

    Inskip, Peter D; Hoover, Robert N; Devesa, Susan S

    2010-11-01

    The use of cellular telephones has grown explosively during the past two decades, and there are now more than 279 million wireless subscribers in the United States. If cellular phone use causes brain cancer, as some suggest, the potential public health implications could be considerable. One might expect the effects of such a prevalent exposure to be reflected in general population incidence rates, unless the induction period is very long or confined to very long-term users. To address this issue, we examined temporal trends in brain cancer incidence rates in the United States, using data collected by the Surveillance, Epidemiology, and End Results (SEER) Program. Log-linear models were used to estimate the annual percent change in rates among whites. With the exception of the 20-29-year age group, the trends for 1992-2006 were downward or flat. Among those aged 20-29 years, there was a statistically significant increasing trend between 1992 and 2006 among females but not among males. The recent trend in 20-29-year-old women was driven by a rising incidence of frontal lobe cancers. No increases were apparent for temporal or parietal lobe cancers, or cancers of the cerebellum, which involve the parts of the brain that would be more highly exposed to radiofrequency radiation from cellular phones. Frontal lobe cancer rates also rose among 20-29-year-old males, but the increase began earlier than among females and before cell phone use was highly prevalent. Overall, these incidence data do not provide support to the view that cellular phone use causes brain cancer.

  16. Properties of bound, resonant, and regular continuum states of the excitation spectrum of symmetric liquid 4He films at T=0 K

    NASA Astrophysics Data System (ADS)

    Szybisz, Leszek

    1996-03-01

    Elementary excitations in rather thick symmetric films of liquid 4He at T=0 K are investigated. They are characterized by a momentum ħq parallel to the surface and may be described by bound or continuum states, which are obtained by solving a Bogoliubov-type equation formulated within the framework of the paired-phonon analysis and the hypernetted-chain approximation. Films of coverages nc=0.3 and 0.4 Å-2 confined by simple Gaussian potentials are studied. The excitation spectrum is numerically evaluated by discretizing the associated eigenvalue problem in a finite box. The evolution of the energy levels as a function of the box size is explored. Examples of the calculated energies and wave functions are displayed in a series of figures. Two differing sorts of continuum states may be distinguished. Depending on the behavior of their excitation energies as a function of the box size on the one hand, and the spatial distribution of their wave functions inside the film and in the asymptotic region far apart from the interface layer on the other, the continuum solutions can be separated into two classes of excitations: (a) the ``regular'' continuum states and (b) the ``resonant modes.'' The matrix elements of the particle-hole potential and the penetration factors of the most important states are examined. The lowest-lying branch of states is always bound and for q

  17. The near-IR spectrum of NO(X˜ 2Π )-Ne detected through excitation into the Östate continuum: A joint experimental and theoretical study

    NASA Astrophysics Data System (ADS)

    Kłos, J.; Zhang, S. G.; Meyer, H.

    2016-03-01

    We present new measurements of the near IR spectrum of NO-Ne in the region of the first NO overtone transition. The IR absorption is detected by exciting the vibrationally excited complex to the A ˜ -state dissociation continuum. The resulting NO(A) fragment is subsequently ionized in the same laser pulse. Spectra of the two lowest bands, A and B, are recorded. The spectra are compared with calculated spectra based on bound states derived from a new set of high level ab initio potential energy surfaces (PESs). For the calculation, the PESs are used with either fixed NO intermolecular distance or averaged for the vibrational states of NO (X ˜ , v = 0 or 2). Spectra based on the new PESs reproduce the experimental spectra better than theoretical spectra based on the older PESs of M. H. Alexander et al. [J. Chem. Phys. 114, 5588 (2001)]. Especially, spectra based on the two different vibrationally averaged PESs show a marked improvement in comparison to the one based on the fixed internuclear NO-distance. A fitted set of spectroscopic constants allows to reproduce most of the finer details of the measured spectra. Monitoring simultaneously the NO fragment ion and the parent ion channels while scanning the UV wavelength through the NO A-X hot-band region enabled us to confirm the NO-Ne A ˜ -state dissociation limit of 44233 ± 5 cm-1. These measurements also confirm the absence of a structured NO-Ne spectrum involving the A ˜ -state.

  18. In vitro chemical and cellular tests applied to uranium trioxide with different hydration states.

    PubMed Central

    Ansoborlo, E; Chalabreysse, J; Hengé-Napoli, M H; Pujol, E

    1992-01-01

    A simple and rapid in vitro chemical solubility test applicable to industrial uranium trioxide (UO3) was developed together with two in vitro cellular tests using rat alveolar macrophages maintained either in gas phase or in alginate beads at 37 degrees C. Industrial UO3 was characterized by particle size, X-ray, and IR spectra, and chemical transformation (e.g., aging and hydration of the dust) was also studied. Solvents used for the in vitro chemical solubility study included carbonates, citrates, phosphates, water, Eagle's basal medium, and Gamble's solution (simulated lung fluid), alone, with oxygen, or with superoxide ions. Results, expressed in terms of the half-time of dissolution, according to International Commission on Radiological Protection (ICRP) classification (D,W,Y), varied for different hydration states of UO3, showing a lower solubility of hydrated UO3 in solvents compared to basic UO3 or UO3 heated at 450 degrees C. Two in vitro cellular tests on cultured rat alveolar macrophages (cells maintained in gas phase and cells immobilized in alginate beads) were used on the same UO3 samples and generally showed a lower solution transfer rate in the presence of macrophages than in the culture medium alone. The results of in vitro chemical and cellular tests were compared, with four main conclusions: a good reproducibility of the three tests in Eagle's basal medium the effect of hydration state on solubility, the classification of UO3 in terms of ICRP solubility criteria, and the ability of macrophages to decrease uranium solubility in medium. PMID:1396449

  19. Comparison of human monocytes isolated by elutriation and adherence suggests that heterogeneity may reflect a continuum of maturation/activation states.

    PubMed Central

    Dransfield, I; Corcoran, D; Partridge, L J; Hogg, N; Burton, D R

    1988-01-01

    Monocytes are heterogeneous both in terms of physical properties and in their functional capacity. Isolation of monocytes from peripheral blood may perturb the observed heterogeneity for purified cell preparations. To explore this possibility we examined monocytes prepared by two techniques, counter-flow centrifugation elutriation (CCE) and fibronectin adherence, in terms of cell-surface molecule expression and several physical properties. Although such cells would be expected to represent dissimilar cross-sections of the total monocyte population, they were found to have similar cell-surface antigenic profiles. Observed differences in levels of expression of several molecules (CR1, CR3 and the antigen recognized by LP9 antibody) were found to be a temperature-related phenomenon. These results indicate that monocytes are not divisible into 'subpopulations' on the basis of cell-surface molecule expression and suggest that heterogeneity of monocytes may reflect the presence in the circulation of a continuum of maturational/activation states. PMID:3350583

  20. The Tumor Suppressor Mst1 Promotes Changes in the Cellular Redox State by Phosphorylation and Inactivation of Peroxiredoxin-1 Protein*

    PubMed Central

    Rawat, Sonali Jalan; Creasy, Caretha L.; Peterson, Jeffrey R.; Chernoff, Jonathan

    2013-01-01

    The serine/threonine protein kinases Mst1 and Mst2 can be activated by cellular stressors including hydrogen peroxide. Using two independent protein interaction screens, we show that these kinases associate, in an oxidation-dependent manner, with Prdx1, an enzyme that regulates the cellular redox state by reducing hydrogen peroxide to water and oxygen. Mst1 inactivates Prdx1 by phosphorylating it at Thr-90 and Thr-183, leading to accumulation of hydrogen peroxide in cells. These results suggest that hydrogen peroxide-stimulated Mst1 activates a positive feedback loop to sustain an oxidizing cellular state. PMID:23386615

  1. [Motivation and Emotional States: Structural Systemic, Neurochemical, Molecular and Cellular Mechanisms].

    PubMed

    Bazyan, A S

    2016-01-01

    The structural, systemic, neurochemical, molecular and cellular mechanisms of organization and coding motivation and emotional states are describe. The GABA and glutamatergic synaptic systems of basal ganglia form a neural network and participate in the implementation of voluntary behavior. Neuropeptides, neurohormones and paracrine neuromodulators involved in the organization of motivation and emotional states, integrated with synaptic systems, controlled by neural networks and organizing goal-directed behavior. Structural centers for united and integrated of information in voluntary and goal-directed behavior are globus pallidus. Substantia nigra pars reticulata switches the information from corticobasal networks to thalamocortical networks, induces global dopaminergic (DA) signal and organize interaction of mesolimbic and nigostriatnoy DA systems controlled by prefrontal and motor cortex. Together with the motor cortex, substantia nigra displays information in the brainstem and spinal cord to implementation of behavior. Motivation states are formed in the interaction of neurohormonal and neuropeptide systems by monoaminergic systems of brain. Emotional states are formed by monoaminergic systems of the mid-brain, where the leading role belongs to the mesolimbic DA system. The emotional and motivation state of the encoded specific epigenetic molecular and chemical pattern of neuron.

  2. Parameter identification in continuum models

    NASA Technical Reports Server (NTRS)

    Banks, H. T.; Crowley, J. M.

    1983-01-01

    Approximation techniques for use in numerical schemes for estimating spatially varying coefficients in continuum models such as those for Euler-Bernoulli beams are discussed. The techniques are based on quintic spline state approximations and cubic spline parameter approximations. Both theoretical and numerical results are presented.

  3. Cross-talk between the cellular redox state and the circadian system in Neurospora.

    PubMed

    Yoshida, Yusuke; Iigusa, Hideo; Wang, Niyan; Hasunuma, Kohji

    2011-01-01

    The circadian system is composed of a number of feedback loops, and multiple feedback loops in the form of oscillators help to maintain stable rhythms. The filamentous fungus Neurospora crassa exhibits a circadian rhythm during asexual spore formation (conidiation banding) and has a major feedback loop that includes the FREQUENCY (FRQ)/WHITE COLLAR (WC) -1 and -2 oscillator (FWO). A mutation in superoxide dismutase (sod)-1, an antioxidant gene, causes a robust and stable circadian rhythm compared with that of wild-type (Wt). However, the mechanisms underlying the functions of reactive oxygen species (ROS) remain unknown. Here, we show that cellular ROS concentrations change in a circadian manner (ROS oscillation), and the amplitudes of ROS oscillation increase with each cycle and then become steady (ROS homeostasis). The ROS oscillation and homeostasis are produced by the ROS-destroying catalases (CATs) and ROS-generating NADPH oxidase (NOX). cat-1 is also induced by illumination, and it reduces ROS levels. Although ROS oscillation persists in the absence of frq, wc-1 or wc-2, its homeostasis is altered. Furthermore, genetic and biochemical evidence reveals that ROS concentration regulates the transcriptional function of WCC and a higher ROS concentration enhances conidiation banding. These findings suggest that the circadian system engages in cross-talk with the cellular redox state via ROS-regulatory factors.

  4. Quasi-bound states and continuum absorption background of polar Al{sub 0.5}Ga{sub 0.5}N/GaN quantum dots

    SciTech Connect

    Elmaghraoui, D. Triki, M.; Jaziri, S.; Leroux, M.; Brault, J.

    2014-07-07

    A theoretical interpretation of the photoluminescence excitation spectra of self-organized polar GaN/(Al,Ga)N quantum dots is presented. A numerical method assuming a realistic shape of the dots and including the built-in electric field effects is developed to calculate their energy structure and hence their optical absorption. The electron and hole spectra show the existence of a set of quasi-bound states that does not originate from the wetting layer and plays a crucial role in the observed absorption spectrum of the GaN/(Al,Ga)N dots. Transitions involving these quasi-bound states and wetting layer states give a sufficient explanation for the observed continuum absorption background. The properties of this absorption band, especially its extension, depend strongly on the dot's size. Our simulation provides a natural explanation of the experimental luminescence excitation spectra of ensembles of dots of different heights. Our theoretical model can be convenient for future optical studies including systems with more complicated potentials.

  5. Continuum effects in transfer reactions induced by heavy ions

    SciTech Connect

    Marta, H.D.; Donangelo, R.; Fernandez Niello, J.O.; Pacheco, A.J.

    2006-02-15

    In the usual treatment of transfer nuclear reactions, the continuum states of the transferred particle are neglected. Here we perform a semiclassical calculation that treats the continuum in an exact way. For comparison purposes, we perform a second calculation in which the continuum is completely disregarded. The results of these two calculations indicates that the influence of the continuum states may be very important in systems with weakly bound reactants.

  6. Traffic states and fundamental diagram in cellular automaton model of vehicular traffic controlled by signals

    NASA Astrophysics Data System (ADS)

    Nagatani, Takashi

    2009-04-01

    We present a cellular automaton (CA) model for vehicular traffic controlled by traffic lights. The CA model is not described by a set of rules, but is given by a simple difference equation. The vehicular motion varies highly with both signals’ characteristics and vehicular density. The dependence of tour time on both cycle time and vehicular density is clarified. In the dilute limit of vehicles, the vehicular motion is compared with that by the nonlinear-map model. The fundamental diagrams are derived numerically. It is shown that the fundamental diagram depends highly on the signals’ characteristics. The traffic states are shown for various values of cycle time in the fundamental diagram. We also study the effect of a slow vehicle on the traffic flow.

  7. The Early Childhood and Elementary Education Continuum: Constructing an Understanding of P-3 as State-Level Policy Reform

    ERIC Educational Resources Information Center

    Kauerz, Kristie Anne

    2009-01-01

    State-level policy attention to young children's early learning opportunities burgeons; a sense of urgency exists to identify reform agendas that are both effective and sustainable. "P-3" often is used as the term for the first level of a seamless P-20 system that stretches from early childhood through post-secondary education. While it…

  8. Open boundaries in a cellular automaton model for traffic flow with metastable states.

    PubMed

    Barlovic, Robert; Huisinga, Torsten; Schadschneider, Andreas; Schreckenberg, Michael

    2002-10-01

    The effects of open boundaries in the velocity-dependent randomization (VDR) model, a modified version of the well-known Nagel-Schreckenberg (NaSch) cellular automaton model for traffic flow, are investigated. In contrast to the NaSch model, the VDR model exhibits metastable states and phase separation in a certain density regime. A proper insertion strategy allows us to investigate the whole spectrum of possible system states and the structure of the phase diagram by Monte Carlo simulations. We observe an interesting microscopic structure of the jammed phases, which is different from the one of the NaSch model. For finite systems, the existence of high flow states in a certain parameter regime leads to a special structure of the fundamental diagram measured in the open system. Apart from that, the results are in agreement with an extremal principle for the flow, which has been introduced for models with a unique flow-density relation. Finally, we discuss the application of our findings for a systematic flow optimization. Here some surprising results are obtained, e.g., a restriction of the inflow can lead to an improvement of the total flow through a bottleneck.

  9. Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states

    NASA Astrophysics Data System (ADS)

    Lancaster, Gemma; Suprunenko, Yevhen F.; Jenkins, Kirsten; Stefanovska, Aneta

    2016-08-01

    Altered cellular energy metabolism is a hallmark of many diseases, one notable example being cancer. Here, we focus on the identification of the transition from healthy to abnormal metabolic states. To do this, we study the dynamics of energy production in a cell. Due to the thermodynamic openness of a living cell, the inability to instantaneously match fluctuating supply and demand in energy metabolism results in nonautonomous time-varying oscillatory dynamics. However, such oscillatory dynamics is often neglected and treated as stochastic. Based on experimental evidence of metabolic oscillations, we show that changes in metabolic state can be described robustly by alterations in the chronotaxicity of the corresponding metabolic oscillations, i.e. the ability of an oscillator to resist external perturbations. We also present a method for the identification of chronotaxicity, applicable to general oscillatory signals and, importantly, apply this to real experimental data. Evidence of chronotaxicity was found in glycolytic oscillations in real yeast cells, verifying that chronotaxicity could be used to study transitions between metabolic states.

  10. Modelling chronotaxicity of cellular energy metabolism to facilitate the identification of altered metabolic states

    PubMed Central

    Lancaster, Gemma; Suprunenko, Yevhen F.; Jenkins, Kirsten; Stefanovska, Aneta

    2016-01-01

    Altered cellular energy metabolism is a hallmark of many diseases, one notable example being cancer. Here, we focus on the identification of the transition from healthy to abnormal metabolic states. To do this, we study the dynamics of energy production in a cell. Due to the thermodynamic openness of a living cell, the inability to instantaneously match fluctuating supply and demand in energy metabolism results in nonautonomous time-varying oscillatory dynamics. However, such oscillatory dynamics is often neglected and treated as stochastic. Based on experimental evidence of metabolic oscillations, we show that changes in metabolic state can be described robustly by alterations in the chronotaxicity of the corresponding metabolic oscillations, i.e. the ability of an oscillator to resist external perturbations. We also present a method for the identification of chronotaxicity, applicable to general oscillatory signals and, importantly, apply this to real experimental data. Evidence of chronotaxicity was found in glycolytic oscillations in real yeast cells, verifying that chronotaxicity could be used to study transitions between metabolic states. PMID:27483987

  11. Emergence of oscillations and spatio-temporal coherence states in a continuum-model of excitatory and inhibitory neurons.

    PubMed

    Sabatini, Silvio P; Solari, Fabio; Secchi, Luca

    2005-01-01

    A neural field model of the reaction-diffusion type for the emergence of oscillatory phenomena in visual cortices is proposed. To investigate the joint spatio-temporal oscillatory dynamics in a continuous distribution of excitatory and inhibitory neurons, the coupling among oscillators is modelled as a diffusion process, combined with non-linear point interactions. The model exhibits cooperative activation properties in both time and space, by reacting to volleys of activations at multiple cortical sites with ordered spatio-temporal oscillatory states, similar to those found in the physiological experiments on slow-wave field potentials. The possible use of the resulting spatial distributions of coherent states, as a flexible medium to establish feature association, is discussed.

  12. The Suicide Prevention Continuum

    PubMed Central

    Caldwell, Dawn

    2010-01-01

    The suicide prevention continuum illustrates a practical approach to the complex issue of suicide prevention. The continuum evolved from discussions with two Aboriginal communities in Atlantic Canada about suicide and the different types of interventions available. The continuum offers a framework and reference tool to differentiate between the different stages of suicide risk. It illustrates where the Aboriginal Community Youth Resilience Network (ACYRN) fits into suicide prevention and how it contributes to prevention knowledge, capacity building, and policy development. PMID:20835376

  13. Cellular Mechanisms Underlying Behavioral State-Dependent Bidirectional Modulation of Motor Cortex Output

    PubMed Central

    Schiemann, Julia; Puggioni, Paolo; Dacre, Joshua; Pelko, Miha; Domanski, Aleksander; van Rossum, Mark C.W.; Duguid, Ian

    2015-01-01

    Summary Neuronal activity in primary motor cortex (M1) correlates with behavioral state, but the cellular mechanisms underpinning behavioral state-dependent modulation of M1 output remain largely unresolved. Here, we performed in vivo patch-clamp recordings from layer 5B (L5B) pyramidal neurons in awake mice during quiet wakefulness and self-paced, voluntary movement. We show that L5B output neurons display bidirectional (i.e., enhanced or suppressed) firing rate changes during movement, mediated via two opposing subthreshold mechanisms: (1) a global decrease in membrane potential variability that reduced L5B firing rates (L5Bsuppressed neurons), and (2) a coincident noradrenaline-mediated increase in excitatory drive to a subpopulation of L5B neurons (L5Benhanced neurons) that elevated firing rates. Blocking noradrenergic receptors in forelimb M1 abolished the bidirectional modulation of M1 output during movement and selectively impaired contralateral forelimb motor coordination. Together, our results provide a mechanism for how noradrenergic neuromodulation and network-driven input changes bidirectionally modulate M1 output during motor behavior. PMID:25981037

  14. Steady-state kinetics of solitary batrachotoxin-treated sodium channels. Kinetics on a bounded continuum of polymer conformations.

    PubMed Central

    Rubinson, K A

    1992-01-01

    The underlying principles of the kinetics and equilibrium of a solitary sodium channel in the steady state are examined. Both the open and closed kinetics are postulated to result from round-trip excursions from a transition region that separates the openable and closed forms. Exponential behavior of the kinetics can have origins different from small-molecule systems. These differences suggest that the probability density functions (PDFs) that describe the time dependences of the open and closed forms arise from a distribution of rate constants. The distribution is likely to arise from a thermal modulation of the channel structure, and this provides a physical basis for the following three-variable equation: [formula; see text] Here, A0 is a scaling term, k is the mean rate constant, and sigma quantifies the Gaussian spread for the contributions of a range of effective rate constants. The maximum contribution is made by k, with rates faster and slower contributing less. (When sigma, the standard deviation of the spread, goes to zero, then p(f) = A0 e-kt.) The equation is applied to the single-channel steady-state probability density functions for batrachotoxin-treated sodium channels (1986. Keller et al. J. Gen. Physiol. 88: 1-23). The following characteristics are found: (a) The data for both open and closed forms of the channel are fit well with the above equation, which represents a Gaussian distribution of first-order rate processes. (b) The simple relationship [formula; see text] holds for the mean effective rat constants. Or, equivalently stated, the values of P open calculated from the k values closely agree with the P open values found directly from the PDF data. (c) In agreement with the known behavior of voltage-dependent rate constants, the voltage dependences of the mean effective rate constants for the opening and closing of the channel are equal and opposite over the voltage range studied. That is, [formula; see text] "Bursts" are related to the well

  15. Probe spectroscopy in an operating magneto-optical trap: The role of Raman transitions between discrete and continuum atomic states

    SciTech Connect

    Brzozowski, Tomasz M.; Brzozowska, Maria; Zachorowski, Jerzy; Zawada, Michal; Gawlik, Wojciech

    2005-01-01

    We report on cw measurements of probe beam absorption and four-wave-mixing spectra in a {sup 85}Rb magneto-optical trap taken while the trap is in operation. The trapping beams are used as pump light. We concentrate on the central feature of the spectra at small pump-probe detuning and attribute its narrow resonant structures to the superposition of Raman transitions between light-shifted sublevels of the ground atomic state and to atomic recoil processes. These two contributions have different dependencies on trap parameters and we show that the former is inhomogeneously broadened. The strong dependence of the spectra on the probe-beam polarization indicates the existence of large optical anisotropy of the cold-atom sample, which is attributed to the recoil effects. We point out that the recoil-induced resonances can be isolated from other contributions, making pump-probe spectroscopy a highly sensitive diagnostic tool for atoms in a working magneto-optical trap.

  16. Application of pseudo-Hermitian quantum mechanics to a PT-symmetric Hamiltonian with a continuum of scattering states

    NASA Astrophysics Data System (ADS)

    Mostafazadeh, Ali

    2005-10-01

    We extend the application of the techniques developed within the framework of the pseudo-Hermitian quantum mechanics to study a unitary quantum system described by an imaginary PT-symmetric potential v(x ) having a continuous real spectrum. For this potential that has recently been used, in the context of optical potentials, for modeling the propagation of electromagnetic waves traveling in a waveguide half and half filled with gain and absorbing media, we give a perturbative construction of the physical Hilbert space, observables, localized states, and the equivalent Hermitian Hamiltonian. Ignoring terms of order three or higher in the non-Hermiticity parameter ζ, we show that the equivalent Hermitian Hamiltonian has the form p2/2m+(ζ2/2)∑n =0∞{αn(x),p2n} with αn(x) vanishing outside an interval that is three times larger than the support of v(x ), i.e., in 2/3 of the physical interaction region the potential v(x ) vanishes identically. We provide a physical interpretation for this unusual behavior and comment on the classical limit of the system.

  17. The Neutrino Energy Loss of Nuclides by K-shell Continuum State Electron Capture at the Late Stage of Stellar Evolution

    NASA Astrophysics Data System (ADS)

    Liu, J. J.; Lin, Y.

    2013-01-01

    Based on the Weinberg-Salam theory and taken into consideration of the Coulomb effect on electron gas, the neutrino energy loss rates by K-shell continuum state electron capture are discussed for ^{12}C, ^{16}O, ^{20}Ne, ^{24}Mg, ^{28}Si and ^{56}Fe under the condition of complete ionization and at the late stage of stellar evolution. Our results are compared with those of Beaudet, Petrosian and Salpeter (BPS). It is shown that at relatively high temperatures (e.g., {T_9 = 0.1} and {T_9 = 1}, T_9 represents the temperature in units of 10^9 K), our results agree well with BPS's. However, at relatively low temperatures (e.g., {T_9 = 0.01} and {T_9 = 0.001}), the neutrino energy loss rates of BPS for ^{16}O, ^{20}Ne, ^{24}Mg and ^{28}Si are higher than our results by 10˜ 70 times, and even by 2 orders of magnitude for nuclide ^{12}C. Our results may be of great importance in the research of late stellar evolution, especially for the cooling mechanism of white dwarf, during which the nucleus collapsed to the stage with a relatively low temperature and intermediate density.

  18. Studies of yrast and continuum states in A=140-160 nuclei. Progress report, January 1, 1980-December 31, 1980. [Purdue Univ. , 1/1/80-12/31/80

    SciTech Connect

    Daly, P.J.

    1981-01-01

    The structure of nuclei in the A approx. 150 region was investigated by in-beam ..gamma..-ray spectroscopy using heavy-ion beams, mostly from the Argonne Tandem-Linac. Results for the nuclei /sup 148/Dy, /sup 149/Dy, /sup 153/Dy, /sup 154/Dy, /sup 149/Ho, and /sup 150/Ho are summarized. The feeding of yrast states in these nuclei and the link between the highest known yrast states and the continuum region were also studied. 6 figures.

  19. Oral Language Continuum.

    ERIC Educational Resources Information Center

    Fresno County Dept. of Education, Fresno, CA.

    An oral language continuum designed to help elementary students develop techniques for a variety of speech situations, learn to listen, and learn to be aware of the responsibility of the speaker is presented. The continuum is divided into four sections. Student needs, implications for teaching, and suggested activities are arranged sequentially.…

  20. Filament formation by metabolic enzymes is a specific adaptation to an advanced state of cellular starvation

    PubMed Central

    Petrovska, Ivana; Nüske, Elisabeth; Munder, Matthias C; Kulasegaran, Gayathrie; Malinovska, Liliana; Kroschwald, Sonja; Richter, Doris; Fahmy, Karim; Gibson, Kimberley; Verbavatz, Jean-Marc; Alberti, Simon

    2014-01-01

    One of the key questions in biology is how the metabolism of a cell responds to changes in the environment. In budding yeast, starvation causes a drop in intracellular pH, but the functional role of this pH change is not well understood. Here, we show that the enzyme glutamine synthetase (Gln1) forms filaments at low pH and that filament formation leads to enzymatic inactivation. Filament formation by Gln1 is a highly cooperative process, strongly dependent on macromolecular crowding, and involves back-to-back stacking of cylindrical homo-decamers into filaments that associate laterally to form higher order fibrils. Other metabolic enzymes also assemble into filaments at low pH. Hence, we propose that filament formation is a general mechanism to inactivate and store key metabolic enzymes during a state of advanced cellular starvation. These findings have broad implications for understanding the interplay between nutritional stress, the metabolism and the physical organization of a cell. DOI: http://dx.doi.org/10.7554/eLife.02409.001 PMID:24771766

  1. FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki.

    PubMed

    Abugessaisa, Imad; Shimoji, Hisashi; Sahin, Serkan; Kondo, Atsushi; Harshbarger, Jayson; Lizio, Marina; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair; Kasukawa, Takeya; Kawaji, Hideya

    2016-01-01

    The Functional Annotation of the Mammalian Genome project (FANTOM5) mapped transcription start sites (TSSs) and measured their activities in a diverse range of biological samples. The FANTOM5 project generated a large data set; including detailed information about the profiled samples, the uncovered TSSs at high base-pair resolution on the genome, their transcriptional initiation activities, and further information of transcriptional regulation. Data sets to explore transcriptome in individual cellular states encoded in the mammalian genomes have been enriched by a series of additional analysis, based on the raw experimental data, along with the progress of the research activities. To make the heterogeneous data set accessible and useful for investigators, we developed a web-based database called Semantic catalog of Samples, Transcription initiation And Regulators (SSTAR). SSTAR utilizes the open source wiki software MediaWiki along with the Semantic MediaWiki (SMW) extension, which provides flexibility to model, store, and display a series of data sets produced during the course of the FANTOM5 project. Our use of SMW demonstrates the utility of the framework for dissemination of large-scale analysis results. SSTAR is a case study in handling biological data generated from a large-scale research project in terms of maintenance and growth alongside research activities.Database URL: http://fantom.gsc.riken.jp/5/sstar/.

  2. FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki

    PubMed Central

    Abugessaisa, Imad; Shimoji, Hisashi; Sahin, Serkan; Kondo, Atsushi; Harshbarger, Jayson; Lizio, Marina; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair; Kasukawa, Takeya; Kawaji, Hideya

    2016-01-01

    The Functional Annotation of the Mammalian Genome project (FANTOM5) mapped transcription start sites (TSSs) and measured their activities in a diverse range of biological samples. The FANTOM5 project generated a large data set; including detailed information about the profiled samples, the uncovered TSSs at high base-pair resolution on the genome, their transcriptional initiation activities, and further information of transcriptional regulation. Data sets to explore transcriptome in individual cellular states encoded in the mammalian genomes have been enriched by a series of additional analysis, based on the raw experimental data, along with the progress of the research activities. To make the heterogeneous data set accessible and useful for investigators, we developed a web-based database called Semantic catalog of Samples, Transcription initiation And Regulators (SSTAR). SSTAR utilizes the open source wiki software MediaWiki along with the Semantic MediaWiki (SMW) extension, which provides flexibility to model, store, and display a series of data sets produced during the course of the FANTOM5 project. Our use of SMW demonstrates the utility of the framework for dissemination of large-scale analysis results. SSTAR is a case study in handling biological data generated from a large-scale research project in terms of maintenance and growth alongside research activities. Database URL: http://fantom.gsc.riken.jp/5/sstar/ PMID:27402679

  3. [Cellular immunity state assessed in bronchial and alveolar lavage for experimental animals exposed to the rubber dust].

    PubMed

    Zhumabekova, B K; Karabalin, S K; Bakirova, R E

    2004-01-01

    Experiments on 21 rats helped to study influence of mechanical rubber dust on cellular immunity state in bronchial and alveolar lavage, efficiency of Ruvimine for prophylaxis. Findings are that mechanical rubber dust is strongly cytotoxic. Ruvimine administration during the whole experiment demonstrates therapeutic and prophylactic effect and normalizes local pulmonary phagocytosis.

  4. The plastic cellular states of liver cells: Are EpCAM and Lgr5 fit for purpose?

    PubMed

    Huch, Meritxell; Dollé, Laurent

    2016-08-01

    Adult liver cells have been considered restricted regarding their fate and lineage potential. That is, hepatocytes have been thought able only to generate hepatocytes and duct cells, only duct cells. While this may be the case for the majority of scenarios in a state of quiescence or homeostasis, evidence suggests that liver cells are capable of interconverting between cellular states of distinct phenotypic traits. This interconversion or plasticity had been suggested by classical studies using cellular markers, but recently lineage tracing approaches have proven that cells are highly plastic and retain an extraordinary ability to respond differently to normal tissue homeostasis, to tissue repair, or when challenged to expand ex vivo or to differentiate upon transplantation. Stemness, as "self-renewal and multipotency," seems not to be limited to a particular cell type but rather to a cellular state in which cells exhibit a high degree of plasticity and can move back and forth in different phenotypic states. For instance, upon damage cells can dedifferentiate to acquire stem cell potential that allows them to self-renew, repopulate a damaged tissue, and then undergo differentiation. In this review, we will discuss the evidence on cellular plasticity in the liver, focusing our attention on two markers, epithelial cell adhesion molecule and leucine-rich repeat-containing G protein-coupled receptor 5, which identify cells with stem cell potential. (Hepatology 2016;64:652-662).

  5. Continuum radiation at Uranus

    SciTech Connect

    Kurth, W.S.; Gurnett, D.A. ); Desch, M.D. )

    1990-02-01

    Uranus has proven to be a radio source of remarkable complexity with as many as six distinctly different types of emission. One Uranian radio emission which has thus far escaped attention is an analog of continuum radiation at Earth, Jupiter, and Saturn. The emission is found to be propagating in the ordinary mode in the range of one to a few kHz on the inbound leg of the Voyager 2 encounter, shortly after the magnetopause crossing. The continuum radiation spectrum at Uranus also includes bands with frequencies as high as 12 kHz or greater on both the inbound and outbound legs. The Uranian continuum radiation is notably weak, making it more like that detected at Saturn than the extremely intense Jovian continuum radiation. The Uranian emission shows some evidence for narrow-band components lying in the same frequency regime as the continuum, completing the analogy with the other planets, which also show narrow-band components superimposed on the continuum spectrum. The authors argue that the low intensity of the Uranian continuum is most likely related to the lack of a density cavity within the Uranian magnetosphere that is deep relative to the solar wind plasma density.

  6. Boundary-corrected four-body continuum-intermediate-state method: Single-electron capture from heliumlike atomic systems by fast nuclei

    NASA Astrophysics Data System (ADS)

    Mančev, Ivan; Milojević, Nenad; Belkić, Dževad

    2015-06-01

    Single charge exchange in collisions between bare projectiles and heliumlike atomic systems at intermediate and high incident energies is examined by using the four-body formalism of the first- and second-order theories. The main purpose of the present study is to investigate the relative importance of the intermediate ionization continua of the captured electron compared to the usual direct path of the single electron transfer from a target to a projectile. In order to achieve this goal, comprehensive comparisons are made between the four-body boundary-corrected continuum-intermediate-states (BCIS-4B) method and the four-body boundary-corrected first Born (CB1-4B) method. The perturbation potential is the same in the CB1-4B and BCIS-4B methods. Both methods satisfy the correct boundary conditions in the entrance and exit channels. However, unlike the CB1-4B method, the second-order BCIS-4B method takes into account the electronic Coulomb continuum-intermediate states in either the entrance or the exit channel depending on whether the post or the prior version of the transition amplitude is used. Hence, by comparing the results from these two theories, the relative importance of the intermediate ionization electronic continua can be assessed within the four-body formalism of scattering theory. The BCIS-4B method predicts the usual second-order effect through double scattering of the captured electron on two nuclei as a quantum-mechanical counterpart of the Thomas classical two-step, billiard-type collision. The physical mechanism for this effect in the BCIS-4B method is also comprised of two steps such that ionization occurs first. This is followed by capture of the electron by the projectile with both processes taking place on the energy shell. Moreover, the role of the second, noncaptured electron in a heliumlike target is revisited. To this end, the BCIS-4B method describes the effect of capture of one electron by the interaction of the projectile nucleus with

  7. Terahertz Atmospheric Attenuation and Continuum Effects

    DTIC Science & Technology

    2013-05-01

    4 . TITLE AND SUBTITLE Terahertz atmospheric attenuation and continuum effects 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6...As stated previously, each dataset had 6 transmission scans, one for each path length. A total of 4 relative humidity levels were studied, 17.89...continuum absorption and instrumentation distortion (blue). All plots are 15.23Torr of water vapor and 746.77Torr or air. 4 RESULTS The

  8. Latinos in the United States on the HIV/AIDS care continuum by birth country/region: a systematic review of the literature.

    PubMed

    Sheehan, Diana M; Trepka, Mary Jo; Dillon, Frank R

    2015-01-01

    Twenty percent of Latinos with HIV in the US are unaware of their HIV status, 33% are linked to care late, and 74% do not reach viral suppression. Disparities along this HIV/AIDS care continuum may be present between various ethnic groups historically categorised as Latino. To identify differences along the HIV/AIDS care continuum between US Latinos of varying birth countries/regions a systematic review of articles published in English between 2002 and 2013 was conducted using MEDLINE, PsycINFO, and Web of Science. Studies that reported on one or more steps of the HIV/AIDS care continuum and reported results by birth country/region for Latinos were included. Latinos born in Mexico and Central America were found to be at increased risk of late diagnosis compared with US-born Latinos. No studies were found that reported on linkage to HIV care or viral load suppression by country/region of birth. Lower survival was found among Latinos born in Puerto Rico compared with Latinos born in mainland US. Inconsistent differences in survival were found among Latinos born in Mexico, Cuba, and Central America. Socio/cultural context, immigration factors, and documentation status are discussed as partial explanations for disparities along the HIV/AIDS care continuum.

  9. A study of high-temperature heat pipes with multiple heat sources and sinks. I - Experimental methodology and frozen startup profiles. II - Analysis of continuum transient and steady-state experimental data with numerical predictions

    NASA Technical Reports Server (NTRS)

    Faghri, A.; Cao, Y.; Buchko, M.

    1991-01-01

    Experimental profiles for heat pipe startup from the frozen state were obtained, using a high-temperature sodium/stainless steel pipe with multiple heat sources and sinks to investigate the startup behavior of the heat pipe for various heat loads and input locations, with both low and high heat rejection rates at the condensor. The experimental results of the performance characteristics for the continuum transient and steady-state operation of the heat pipe were analyzed, and the performance limits for operation with varying heat fluxes and location are determined.

  10. Examining the Psychosis Continuum

    PubMed Central

    DeRosse, Pamela; Karlsgodt, Katherine H.

    2015-01-01

    The notion that psychosis may exist on a continuum with normal experience has been proposed in multiple forms throughout the history of psychiatry. However, in recent years there has been an exponential increase in efforts aimed at elucidating what has been termed the ‘psychosis continuum’. The present review seeks to summarize some of the more basic characteristics of this continuum and to present some of the recent findings that provide support for its validity. While there is still considerable work to be done, the emerging data holds considerable promise for advancing our understanding of both risk and resilience to psychiatric disorders characterized by psychosis. PMID:26052479

  11. Rapid induction and persistence of paracrine-induced cellular antiviral states arrest viral infection spread in A549 cells

    PubMed Central

    Voigt, Emily A; Swick, Adam; Yin, John

    2016-01-01

    The virus/host interaction is a complex interplay between pro- and anti-viral factors that ultimately determines the spread or halt of virus infections in tissues. This interplay develops over multiple rounds of infection. The purpose of this study was to determine how cellular-level processes combine to impact the spatial spread of infection. We measured the kinetics of virus replication (VSV), antiviral paracrine signal upregulation and secretion, spatial spread of virus and paracrine antiviral signaling, and inhibition of virus production in antiviral-exposed A549 human lung epithelial cells. We found that initially infected cells released antiviral signals 4-to-7 hours following production of virus. However, the subsequent rapid dissemination of signal and fast induction of a robust and persistent antiviral state ultimately led to a suppression of infection spread. This work shows how cellular responses to infection and activation of antiviral responses can integrate to ultimately control infection spread across host cell populations. PMID:27254596

  12. The Continuum of Listening

    ERIC Educational Resources Information Center

    Rud, A. G.; Garrison, Jim

    2007-01-01

    The distinction between "apophatic" and "cataphatic" listening is defined and analyzed. "Apophatic" listening is more or less devoid of cognitivist claims, whereas "cataphatic" listening involves cognition and questioning. Many of the papers in this volume are discussed along the continuum determined by these two types of listening.…

  13. The Creativity Continuum

    ERIC Educational Resources Information Center

    Walling, Donovan R.

    2009-01-01

    Children are innately creative, and the youngest often are the most original because they have yet to be influenced by the creativity of others. One way to think of creative expression is as a continuum. At one end is originality, or the creation of something wholly new, "original." At the other end is replication, or the re-creation of something…

  14. Modeling angiogenesis: A discrete to continuum description

    NASA Astrophysics Data System (ADS)

    Pillay, Samara; Byrne, Helen M.; Maini, Philip K.

    2017-01-01

    Angiogenesis is the process by which new blood vessels develop from existing vasculature. During angiogenesis, endothelial tip cells migrate via diffusion and chemotaxis, loops form via tip-to-tip and tip-to-sprout anastomosis, new tip cells are produced via branching, and a vessel network forms as endothelial cells follow the paths of tip cells. The latter process is known as the snail trail. We use a mean-field approximation to systematically derive a continuum model from a two-dimensional lattice-based cellular automaton model of angiogenesis in the corneal assay, based on the snail-trail process. From the two-dimensional continuum model, we derive a one-dimensional model which represents angiogenesis in two dimensions. By comparing the discrete and one-dimensional continuum models, we determine how individual cell behavior manifests at the macroscale. In contrast to the phenomenological continuum models in the literature, we find that endothelial cell creation due to tip cell movement (vessel formation via the snail trail) manifests as a source term of tip cells on the macroscale. Further, we find that phenomenological continuum models, which assume that endothelial cell creation is proportional to the flux of tip cells in the direction of increasing chemoattractant concentration, qualitatively capture vessel formation in two dimensions, but must be modified to accurately represent vessel formation. Additionally, we find that anastomosis imposes restrictions on cell density, which, if violated, leads to ill-posedness in our continuum model. We also deduce that self-loops should be excluded when tip-to-sprout anastomosis is active in the discrete model to ensure propagation of the vascular front.

  15. Unified ab initio approach to bound and unbound states: No-core shell model with continuum and its application to 7He

    SciTech Connect

    Baroni, Simone; Navratil, Petr; Quaglioni, Sofia

    2013-03-26

    In this study, we introduce a unified approach to nuclear bound and continuum states based on the coupling of the no-core shell model (NCSM), a bound-state technique, with the no-core shell model/resonating group method (NCSM/RGM), a nuclear scattering technique. This new ab initio method, no-core shell model with continuum (NCSMC), leads to convergence properties superior to either NCSM or NCSM/RGM while providing a balanced approach to different classes of states. In the NCSMC, the ansatz for the many-nucleon wave function includes (i) a square-integrable A-nucleon component expanded in a complete harmonic oscillator basis and (ii) a binary-cluster component with asymptotic boundary conditions that can properly describe weakly bound states, resonances, and scattering. The Schrödinger equation is transformed into a system of coupled-channel integral-differential equations that we solve using a modified microscopic R-matrix formalism within a Lagrange mesh basis. We demonstrate the usefulness of the approach by investigating the unbound 7He nucleus.

  16. Inhibition of catalase by tea catechins in free and cellular state: a biophysical approach.

    PubMed

    Pal, Sandip; Dey, Subrata Kumar; Saha, Chabita

    2014-01-01

    Tea flavonoids bind to variety of enzymes and inhibit their activities. In the present study, binding and inhibition of catalase activity by catechins with respect to their structure-affinity relationship has been elucidated. Fluorimetrically determined binding constants for (-)-epigallocatechin gallate (EGCG) and (-)-epicatechin gallate (ECG) with catalase were observed to be 2.27×106 M(-1) and 1.66×106 M(-1), respectively. Thermodynamic parameters evidence exothermic and spontaneous interaction between catechins and catalase. Major forces of interaction are suggested to be through hydrogen bonding along with electrostatic contributions and conformational changes. Distinct loss of α-helical structure of catalase by interaction with EGCG was captured in circular dichroism (CD) spectra. Gallated catechins demonstrated higher binding constants and inhibition efficacy than non-gallated catechins. EGCG exhibited maximum inhibition of pure catalase. It also inhibited cellular catalase in K562 cancer cells with significant increase in cellular ROS and suppression of cell viability (IC50 54.5 µM). These results decipher the molecular mechanism by which tea catechins interact with catalase and highlight the potential of gallated catechin like EGCG as an anticancer drug. EGCG may have other non-specific targets in the cell, but its anticancer property is mainly defined by ROS accumulation due to catalase inhibition.

  17. Cellular redox state and endothelial dysfunction in mildly hyperhomocysteinemic cystathionine beta-synthase-deficient mice.

    PubMed

    Weiss, Norbert; Heydrick, Stanley; Zhang, Ying-Yi; Bierl, Charlene; Cap, André; Loscalzo, Joseph

    2002-01-01

    Previous in vitro experiments have shown that hyperhomocysteinemia leads to oxidative inactivation of nitric oxide, in part by inhibiting the expression of cellular glutathione peroxidase (GPx-1). To elucidate the role of intracellular redox status on homocysteine-induced endothelial dysfunction and oxidant stress, heterozygous cystathionine beta-synthase-deficient (CBS(-/+)) and wild-type (CBS(+/+)) mice were treated with the cysteine donor L-2-oxothiazolidine-4-carboxylic acid (OTC). CBS(-/+) mice had significantly lower GPx-1 activity compared with their CBS(+/+) littermates, and OTC treatment led to a modest increase in tissue GPx-1 activity and significant increases in total thiols and in reduced glutathione levels in both CBS(+/+) and CBS(-/+) mice. Superfusion of the mesentery with beta-methacholine or bradykinin produced dose-dependent vasodilation of mesenteric arterioles in CBS(+/+) mice and in CBS(+/+) mice treated with OTC. In contrast, mesenteric arterioles from CBS(-/+) mice manifested dose-dependent vasoconstriction in response to both agonists. OTC treatment of CBS(-/+) mice restored normal microvascular vasodilator reactivity to beta-methacholine and bradykinin. These findings demonstrate that mild hyperhomocysteinemia leads to endothelial dysfunction in association with decreased bioavailable nitric oxide. Increasing the cellular thiol and reduced glutathione pools and increasing GPx-1 activity restores endothelial function. These findings emphasize the importance of intracellular redox balance for nitric oxide bioactivity and endothelial function.

  18. Hormesis, cellular stress response and neuroinflammation in schizophrenia: Early onset versus late onset state.

    PubMed

    Calabrese, Vittorio; Giordano, James; Crupi, Rosalia; Di Paola, Rosanna; Ruggieri, Martino; Bianchini, Rio; Ontario, Maria Laura; Cuzzocrea, Salvatore; Calabrese, Edward J

    2017-05-01

    Abnormal redox homeostasis and oxidative stress have been proposed to play a role in the etiology of several neuropsychiatric spectrum disorders. Emerging interest has recently focused on markers of oxidative stress and neuroinflammation in schizophrenic spectrum disorders, at least in particular subgroups of patients. Altered expression of genes related to oxidative stress, oxidative damage to DNA, protein and lipids, as well as reduced glutathione levels in central and peripheral tissues could act synergistically, and contribute to the course of the disease.  Herein, we discuss cellular mechanisms that may be operative in neuroinflammation and contributory to schizophrenia. We address modulation of endogenous cellular defense mechanisms as a potentially innovative approach to therapeutics for schizophrenia, and other neuropsychiatric conditions that are associated with neuroinflammation. Specifically, we discuss the emerging role of heme oxygenase as prominent member of neuroprotective network in redox stress responsive mechanisms, as well as the importance of glutathione relevant in schizophrenia pathophysiology. Finally we introduce the hormetic dose response concept as relevant and important to neuroprotection, and review hormetic mechanisms as possible approaches to manipulation of neuroinflammatory targets that may be viable for treating schizophrenia spectrum disorders. © 2016 Wiley Periodicals, Inc.

  19. Diversification of importin-α isoforms in cellular trafficking and disease states

    PubMed Central

    Pumroy, Ruth A.; Cingolani, Gino

    2015-01-01

    The human genome encodes seven isoforms of importin α which are grouped into three subfamilies known as α1, α2 and α3. All isoforms share a fundamentally conserved architecture that consists of an N-terminal, autoinhibitory, importin-β-binding (IBB) domain and a C-terminal Arm (Armadillo)-core that associates with nuclear localization signal (NLS) cargoes. Despite striking similarity in amino acid sequence and 3D structure, importin-α isoforms display remarkable substrate specificity in vivo. In the present review, we look at key differences among importin-α isoforms and provide a comprehensive inventory of known viral and cellular cargoes that have been shown to associate preferentially with specific isoforms. We illustrate how the diversification of the adaptor importin α into seven isoforms expands the dynamic range and regulatory control of nucleocytoplasmic transport, offering unexpected opportunities for pharmacological intervention. The emerging view of importin α is that of a key signalling molecule, with isoforms that confer preferential nuclear entry and spatiotemporal specificity on viral and cellular cargoes directly linked to human diseases. PMID:25656054

  20. Disordered cellular automaton traffic flow model: phase separated state, density waves and self organized criticality

    NASA Astrophysics Data System (ADS)

    Fourrate, K.; Loulidi, M.

    2006-01-01

    We suggest a disordered traffic flow model that captures many features of traffic flow. It is an extension of the Nagel-Schreckenberg (NaSch) stochastic cellular automata for single line vehicular traffic model. It incorporates random acceleration and deceleration terms that may be greater than one unit. Our model leads under its intrinsic dynamics, for high values of braking probability pr, to a constant flow at intermediate densities without introducing any spatial inhomogeneities. For a system of fast drivers pr→0, the model exhibits a density wave behavior that was observed in car following models with optimal velocity. The gap of the disordered model we present exhibits, for high values of pr and random deceleration, at a critical density, a power law distribution which is a hall mark of a self organized criticality phenomena.

  1. Cellular mechanisms of cardioprotection by calorie restriction: state of the science and future perspectives

    PubMed Central

    Marzetti, Emanuele; Wohlgemuth, Stephanie E.; Anton, Stephen D.; Bernabei, Roberto; Carter, Christy S.; Leeuwenburgh, Christiaan

    2009-01-01

    Synopsis Evidence from animal models and preliminary studies in humans indicate that calorie restriction (CR) delays cardiac aging and can prevent cardiovascular disease. These effects are mediated by a wide spectrum of biochemical and cellular adaptations, including redox homeostasis, mitochondrial function, inflammation, apoptosis and autophagy. Despite the beneficial effects of CR, its large-scale implementation is challenged by applicability issues as well as health concerns. However, preclinical studies indicate that specific compounds, such as resveratrol, may mimic many of the effects of CR, thus potentially obviating the need for drastic food intake reductions. Results from ongoing clinical trials will reveal whether the intriguing alternative of CR mimetics represents a safe and effective strategy to promote cardiovascular health and delay cardiac aging in humans. PMID:19944269

  2. Isostaticity in Cosserat Continuum

    DTIC Science & Technology

    2012-01-01

    Research Office P.O. Box 12211 Research Triangle Park, NC 27709-2211 15. SUBJECT TERMS Isostaticity, Cosserat, Granular, Force chains Antoinette ...TELEPHONE NUMBER Antoinette Tordesillas 038-344-9685 3. DATES COVERED (From - To) Standard Form 298 (Rev 8/98) Prescribed by ANSI Std. Z39.18...Cosserat continuum Antoinette Tordesillas · Jingyu Shi · John F. Peters Received: 29 August 2011 / Published online: 16 March 2012 © Springer-Verlag 2012

  3. A continuum model of transcriptional bursting

    PubMed Central

    Corrigan, Adam M; Tunnacliffe, Edward; Cannon, Danielle; Chubb, Jonathan R

    2016-01-01

    Transcription occurs in stochastic bursts. Early models based upon RNA hybridisation studies suggest bursting dynamics arise from alternating inactive and permissive states. Here we investigate bursting mechanism in live cells by quantitative imaging of actin gene transcription, combined with molecular genetics, stochastic simulation and probabilistic modelling. In contrast to early models, our data indicate a continuum of transcriptional states, with a slowly fluctuating initiation rate converting the gene between different levels of activity, interspersed with extended periods of inactivity. We place an upper limit of 40 s on the lifetime of fluctuations in elongation rate, with initiation rate variations persisting an order of magnitude longer. TATA mutations reduce the accessibility of high activity states, leaving the lifetime of on- and off-states unchanged. A continuum or spectrum of gene states potentially enables a wide dynamic range for cell responses to stimuli. DOI: http://dx.doi.org/10.7554/eLife.13051.001 PMID:26896676

  4. Functional Assessment of Magno, Parvo and Konio-Cellular Pathways; Current State and Future Clinical Applications

    PubMed Central

    Yoonessi, Ali; Yoonessi, Ahmad

    2011-01-01

    The information generated by cone photoreceptors in the retina is compressed and transferred to higher processing centers through three distinct types of ganglion cells known as magno, parvo and konio cells. These ganglion cells, which travel from the retina to the lateral geniculate nucleus (LGN) and then to the primary visual cortex, have different structural and functional characteristics, and are organized in distinct layers in the LGN and the primary visual cortex. Magno cells are large, have thick axons and usually collect input from many retinal cells. Parvo cells are smaller, with fine axons and less myelin than mango cells. Konio cells are diverse small cells with wide fields of input consisting of different cells types. The three cellular pathways also differ in function. Magno cells respond rapidly to changing stimuli, while parvo cells need time to respond. The distinct patterns of structure and function in these cells have provided an opportunity for clinical assessment of their function. Functional assessment of these cells is currently used in the field of ophthalmology where frequency-doubling technology perimetry selectively assesses the function of magno cells. Evidence has accrued that the three pathways show characteristic patterns of malfunctions in multiple sclerosis, schizophrenia, Parkinson’s and Alzheimer’s diseases, and several other disorders. The combination of behavioral assessment with other techniques, such as event related potentials and functional magnetic resonance imaging, seems to bear promising future clinical applications. PMID:22454721

  5. Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

    PubMed Central

    Bodenmiller, Bernd; Zunder, Eli R.; Finck, Rachel; Chen, Tiffany J.; Savig, Erica S.; Bruggner, Robert V.; Simonds, Erin F.; Bendall, Sean C.; Sachs, Karen; Krutzik, Peter O.; Nolan, Garry P.

    2013-01-01

    The ability to comprehensively explore the impact of bio-active molecules on human samples at the single-cell level can provide great insight for biomedical research. Mass cytometry enables quantitative single-cell analysis with deep dimensionality, but currently lacks high-throughput capability. Here we report a method termed mass-tag cellular barcoding (MCB) that increases mass cytometry throughput by sample multiplexing. 96-well format MCB was used to characterize human peripheral blood mononuclear cell (PBMC) signaling dynamics, cell-to-cell communication, the signaling variability between 8 donors, and to define the impact of 27 inhibitors on this system. For each compound, 14 phosphorylation sites were measured in 14 PBMC types, resulting in 18,816 quantified phosphorylation levels from each multiplexed sample. This high-dimensional systems-level inquiry allowed analysis across cell-type and signaling space, reclassified inhibitors, and revealed off-target effects. MCB enables high-content, high-throughput screening, with potential applications for drug discovery, pre-clinical testing, and mechanistic investigation of human disease. PMID:22902532

  6. Chemical tagging and customizing of cellular chromatin states using ultrafast trans-splicing inteins

    NASA Astrophysics Data System (ADS)

    David, Yael; Vila-Perelló, Miquel; Verma, Shivam; Muir, Tom W.

    2015-05-01

    Post-translational modification of the histone proteins in chromatin plays a central role in the epigenetic control of DNA-templated processes in eukaryotic cells. Developing methods that enable the structure of histones to be manipulated is, therefore, essential to understand the biochemical mechanisms that underlie genomic regulation. Here we present a synthetic biology method to engineer histones that bear site-specific modifications on cellular chromatin using protein trans-splicing (PTS). We genetically fused the N-terminal fragment of ultrafast split intein to the C terminus of histone H2B, which, on reaction with a complementary synthetic C intein, generated labelled histone. Using this approach, we incorporated various non-native chemical modifications into chromatin in vivo with temporal control. Furthermore, the time and concentration dependence of PTS performed in nucleo enabled us to examine differences in the accessibility of the euchromatin and heterochromatin regions of the epigenome. Finally, we used PTS to semisynthesize a native histone modification, H2BK120 ubiquitination, in isolated nuclei and showed that this can trigger downstream epigenetic crosstalk of H3K79 methylation.

  7. Chemical Fluxes in Cellular Steady States Measured by Fluorescence Correlation Spectroscopy

    NASA Astrophysics Data System (ADS)

    Qian, Hong; Elson, Elliot L.

    Genetically, identical cells adopt phenotypes that have different structures, functions, and metabolic properties. In multi-cellular organisms, for example, tissue-specific phenotypes distinguish muscle cells, liver cells, fibroblasts, and blood cells that differ in biochemical functions, geometric forms, and interactions with extracellular environments. Tissue-specific cells usually have different metabolic functions such as synthesis of distinct spectra of secreted proteins, e.g., by liver or pancreatic cells, or of structural proteins, e.g., muscle vs. epithelial cells. But more importantly, a phenotype should include a dynamic aspect: different phenotypes can have distinctly different dynamic functions such as contraction of muscle cells and locomotion of leukocytes. The phenotypes of differentiated tissue cells are typically stable, but they can respond to changes in external conditions, e.g., as in the hypertrophy of muscle cells in response to extra load [1] or the phenotypic shift of fibroblasts to myofibroblasts as part of the wound healing response [2]. Cells pass through sequences of phenotypes during development and also undergo malignant phenotypic transformations as occur in cancer and heart disease.

  8. Stiffness Control of Surgical Continuum Manipulators

    PubMed Central

    Mahvash, Mohsen; Dupont, Pierre E.

    2013-01-01

    This paper introduces the first stiffness controller for continuum robots. The control law is based on an accurate approximation of a continuum robot’s coupled kinematic and static force model. To implement a desired tip stiffness, the controller drives the actuators to positions corresponding to a deflected robot configuration that produces the required tip force for the measured tip position. This approach provides several important advantages. First, it enables the use of robot deflection sensing as a means to both sense and control tip forces. Second, it enables stiffness control to be implemented by modification of existing continuum robot position controllers. The proposed controller is demonstrated experimentally in the context of a concentric tube robot. Results show that the stiffness controller achieves the desired stiffness in steady state, provides good dynamic performance, and exhibits stability during contact transitions. PMID:24273466

  9. Stiffness Control of Surgical Continuum Manipulators.

    PubMed

    Mahvash, Mohsen; Dupont, Pierre E

    2011-04-01

    This paper introduces the first stiffness controller for continuum robots. The control law is based on an accurate approximation of a continuum robot's coupled kinematic and static force model. To implement a desired tip stiffness, the controller drives the actuators to positions corresponding to a deflected robot configuration that produces the required tip force for the measured tip position. This approach provides several important advantages. First, it enables the use of robot deflection sensing as a means to both sense and control tip forces. Second, it enables stiffness control to be implemented by modification of existing continuum robot position controllers. The proposed controller is demonstrated experimentally in the context of a concentric tube robot. Results show that the stiffness controller achieves the desired stiffness in steady state, provides good dynamic performance, and exhibits stability during contact transitions.

  10. Correlating two-photon excited fluorescence imaging of breast cancer cellular redox state with seahorse flux analysis of normalized cellular oxygen consumption

    NASA Astrophysics Data System (ADS)

    Hou, Jue; Wright, Heather J.; Chan, Nicole; Tran, Richard; Razorenova, Olga V.; Potma, Eric O.; Tromberg, Bruce J.

    2016-06-01

    Two-photon excited fluorescence (TPEF) imaging of the cellular cofactors nicotinamide adenine dinucleotide and oxidized flavin adenine dinucleotide is widely used to measure cellular metabolism, both in normal and pathological cells and tissues. When dual-wavelength excitation is used, ratiometric TPEF imaging of the intrinsic cofactor fluorescence provides a metabolic index of cells-the "optical redox ratio" (ORR). With increased interest in understanding and controlling cellular metabolism in cancer, there is a need to evaluate the performance of ORR in malignant cells. We compare TPEF metabolic imaging with seahorse flux analysis of cellular oxygen consumption in two different breast cancer cell lines (MCF-7 and MDA-MB-231). We monitor metabolic index in living cells under both normal culture conditions and, for MCF-7, in response to cell respiration inhibitors and uncouplers. We observe a significant correlation between the TPEF-derived ORR and the flux analyzer measurements (R=0.7901, p<0.001). Our results confirm that the ORR is a valid dynamic index of cell metabolism under a range of oxygen consumption conditions relevant for cancer imaging.

  11. The Response Continuum

    SciTech Connect

    Caltagirone, Sergio; Frincke, Deborah A.

    2005-06-17

    Active response is a sequence of actions per- formed speci¯cally to mitigate a detected threat. Response decisions always follow detection: a decision to take `no ac- tion' remains a response decision. However, active response is a complex subject that has received insu±cient formal attention. To facilitate discussion, this paper provides a framework that proposes a common de¯nition, describes the role of response and the major issues surrounding response choices, and ¯nally, provides a model for the process of re- sponse. This provides a common starting point for discus- sion of the full response continuum as an integral part of contemporary computer security.

  12. Micropolar continuum in spatial description

    NASA Astrophysics Data System (ADS)

    Ivanova, Elena A.; Vilchevskaya, Elena N.

    2016-11-01

    Within the spatial description, it is customary to refer thermodynamic state quantities to an elementary volume fixed in space containing an ensemble of particles. During its evolution, the elementary volume is occupied by different particles, each having its own mass, tensor of inertia, angular and linear velocities. The aim of the present paper is to answer the question of how to determine the inertial and kinematic characteristics of the elementary volume. In order to model structural transformations due to the consolidation or defragmentation of particles or anisotropic changes, one should consider the fact that the tensor of inertia of the elementary volume may change. This means that an additional constitutive equation must be formulated. The paper suggests kinetic equations for the tensor of inertia of the elementary volume. It also discusses the specificity of the inelastic polar continuum description within the framework of the spatial description.

  13. Computational Methods in Continuum Mechanics

    DTIC Science & Technology

    1993-11-30

    ftruet11ft bwalch.Aq 0.4.oiqn 04ta tou.MtC’ gahimtc" n matod .nAfitang In@ data 01#04141. OAd co0noIDW~ng And tft@nq the ~OIWCI&Qn of 1,onjt~omt .nd~ml...AD-A27S 560 DTIC\\3\\Ul3 10 S ELECTE1 FEB 9 1994 I c I £ COMPUTATIONAL METHODS IN CONTINUUM MECHANICS By Bolindra N . Borah N.C. A&T State University...PAGE 0me No 0.704-0158 io (reorovtnq burden ’Of .t..i e’iortion of Information is estimted to ’Adoraw 1O4 .0 e~o- * n th.n I~c ot.. "o.vw.n. q

  14. Conway's Game of Life is a near-critical metastable state in the multiverse of cellular automata.

    PubMed

    Reia, Sandro M; Kinouchi, Osame

    2014-05-01

    Conway's cellular automaton Game of Life has been conjectured to be a critical (or quasicritical) dynamical system. This criticality is generally seen as a continuous order-disorder transition in cellular automata (CA) rule space. Life's mean-field return map predicts an absorbing vacuum phase (ρ = 0) and an active phase density, with ρ = 0.37, which contrasts with Life's absorbing states in a square lattice, which have a stationary density of ρ(2D) ≈ 0.03. Here, we study and classify mean-field maps for 6144 outer-totalistic CA and compare them with the corresponding behavior found in the square lattice. We show that the single-site mean-field approach gives qualitative (and even quantitative) predictions for most of them. The transition region in rule space seems to correspond to a nonequilibrium discontinuous absorbing phase transition instead of a continuous order-disorder one. We claim that Life is a quasicritical nucleation process where vacuum phase domains invade the alive phase. Therefore, Life is not at the "border of chaos," but thrives on the "border of extinction."

  15. Conway's game of life is a near-critical metastable state in the multiverse of cellular automata

    NASA Astrophysics Data System (ADS)

    Reia, Sandro M.; Kinouchi, Osame

    2014-05-01

    Conway's cellular automaton Game of Life has been conjectured to be a critical (or quasicritical) dynamical system. This criticality is generally seen as a continuous order-disorder transition in cellular automata (CA) rule space. Life's mean-field return map predicts an absorbing vacuum phase (ρ =0) and an active phase density, with ρ =0.37, which contrasts with Life's absorbing states in a square lattice, which have a stationary density of ρ2D≈0.03. Here, we study and classify mean-field maps for 6144 outer-totalistic CA and compare them with the corresponding behavior found in the square lattice. We show that the single-site mean-field approach gives qualitative (and even quantitative) predictions for most of them. The transition region in rule space seems to correspond to a nonequilibrium discontinuous absorbing phase transition instead of a continuous order-disorder one. We claim that Life is a quasicritical nucleation process where vacuum phase domains invade the alive phase. Therefore, Life is not at the "border of chaos," but thrives on the "border of extinction."

  16. The cellular energization state affects peripheral stalk stability of plant vacuolar H+-ATPase and impairs vacuolar acidification.

    PubMed

    Schnitzer, Daniel; Seidel, Thorsten; Sander, Tim; Golldack, Dortje; Dietz, Karl-Josef

    2011-05-01

    The plant vacuolar H(+)-ATPase takes part in acidifying compartments of the endomembrane system including the secretory pathway and the vacuoles. The structural variability of the V-ATPase complex as well as its presence in different compartments and tissues involves multiple isoforms of V-ATPase subunits. Furthermore, a versatile regulation is essential to allow for organelle- and tissue-specific fine tuning. In this study, results from V-ATPase complex disassembly with a chaotropic reagent, immunodetection and in vivo fluorescence resonance energy transfer (FRET) analyses point to a regulatory mechanism in plants, which depends on energization and involves the stability of the peripheral stalks as well. Lowering of cellular ATP by feeding 2-deoxyglucose resulted in structural alterations within the V-ATPase, as monitored by changes in FRET efficiency between subunits VHA-E and VHA-C. Potassium iodide-mediated disassembly revealed a reduced stability of V-ATPase after 2-deoxyglucose treatment of the cells, but neither the complete V(1)-sector nor VHA-C was released from the membrane in response to 2-deoxyglucose treatment, precluding a reversible dissociation mechanism like in yeast. These data suggest the existence of a regulatory mechanism of plant V-ATPase by modification of the peripheral stator structure that is linked to the cellular energization state. This mechanism is distinct from reversible dissociation as reported for the yeast V-ATPase, but might represent an evolutionary precursor of reversible dissociation.

  17. Continuum lowering - A new perspective

    NASA Astrophysics Data System (ADS)

    Crowley, B. J. B.

    2014-12-01

    What is meant by continuum lowering and ionization potential depression (IPD) in a Coulomb system depends very much upon precisely what question is being asked. It is shown that equilibrium (equation of state) phenomena and non-equilibrium dynamical processes like photoionization are characterized by different values of the IPD. In the former, the ionization potential of an atom embedded in matter is the difference in the free energy of the many-body system between states of thermodynamic equilibrium differing by the ionization state of just one atom. Typically, this energy is less than that required to ionize the same atom in vacuo. Probably, the best known example of this is the IPD given by Stewart and Pyatt (SP). However, it is a common misconception that this formula should apply directly to the energy of a photon causing photoionization, since this is a local adiabatic process that occurs in the absence of a response from the surrounding plasma. To achieve the prescribed final equilibrium state, in general, additional energy, in the form of heat and work, is transferred between the atom and its surroundings. This additional relaxation energy is sufficient to explain the discrepancy between recent spectroscopic measurements of IPD in dense plasmas and the predictions of the SP formula. This paper provides a detailed account of an analytical approach, based on SP, to calculating thermodynamic and spectroscopic (adiabatic) IPDs in multicomponent Coulomb systems of arbitrary coupling strength with Te ≠ Ti. The ramifications for equilibrium Coulomb systems are examined in order to elucidate the roles of the various forms of the IPD and any possible connection with the plasma microfield. The formulation embodies an analytical equation of state (EoS) that is thermodynamically self-consistent, provided that the bound and free electrons are dynamically separable, meaning that the system is not undergoing pressure ionization. Apart from this restriction, the model is

  18. Kilometric Continuum Radiation

    NASA Technical Reports Server (NTRS)

    Green, James L.; Boardsen, Scott

    2006-01-01

    Kilometric continuum (KC) is the high frequency component (approximately 100 kHz to approximately 800 kHz) of nonthermal continuum (NTC). Unlike the lower frequency portion of NTC (approximately 5 kHz to approximately 100 kHz) whose source is around the dawn sector, the source of KC occurs at all magnetic local times. The latitudinal beaming of KC as observed by GEOTAIL is, for most events, restricted to plus or minus 15 degrees magnetic latitude. KC has been observed during periods of both low and strong geomagnetic activity, with no significant correlation of wave intensity with K(sub p), index. However statistically the maximum observed frequency of KC emission tends to increase with K(sub p) index, the effect is more pronounced around solar maximum, but is also detected near solar minimum. There is strong evidence that the source region of KC is from the equatorial plasmapause during periods when a portion of the plasmapause moves significantly inwards from its nominal position. Case studies have shown that KC emissions are nearly always associated with plasmaspheric notches, shoulders, and tails. There is a recent focus on trying to understand the banded frequency structure of this emission and its relationship to plasmaspheric density ducts and irregularities in the source region.

  19. Some Continuum Aspects of Data Assimilation

    NASA Technical Reports Server (NTRS)

    Cohn, Stephen E.; Menard, Richard

    1999-01-01

    A long-sought goal in data assimilation is to build more fully the time dimension into the data assimilation process. Truly four-dimensional data assimilation requires evolving second-moment information, namely the estimation error covariance, along with the state estimate itself. The continuum evolution equations for the estimation error covariance constitute a system of partial differential equations in six space dimensions, forced by a model error covariance and by the observations themselves. The high dimensionality of this system poses a difficult computational problem. Numerous methods have been proposed for approximate, discrete solution of this system of equations. Four-dimensional variational schemes solve these equations indirectly, while schemes based on Kalman filtering solve the equations more directly, usually on a small subspace of the full six-dimensional space. In both cases, most proposed solution methods are not derived from the continuum covariance evolution equations themselves. Instead, most methods simply inherit the discretization used for evolving the state estimate, either in the form of a discrete tangent linear model or, in the case of ensemble schemes, in the form of a fully nonlinear discrete model. In this lecture we show that solutions of the continuum covariance evolution equations possess simple properties that are not readily satisfied upon discretization of the equations. we give numerical examples illustrating that "inherited" discretizations sometimes fail to produce meaningfully accurate solutions. Finally, we suggest alternative discretization methods that may yield more faithful approximate solutions of the continuum problem.

  20. Cellular automata coupled with steady-state nutrient solution permit simulation of large-scale growth of tumours.

    PubMed

    Shrestha, Sachin Man Bajimaya; Joldes, Grand Roman; Wittek, Adam; Miller, Karol

    2013-04-01

    We model complete growth of an avascular tumour by employing cellular automata for the growth of cells and steady-state equation to solve for nutrient concentrations. Our modelling and computer simulation results show that, in the case of a brain tumour, oxygen distribution in the tumour volume may be sufficiently described by a time-independent steady-state equation without losing the characteristics of a time-dependent diffusion equation. This makes the solution of oxygen concentration in the tumour volume computationally more efficient, thus enabling simulation of tumour growth on a large scale. We solve this steady-state equation using a central difference method. We take into account the composition of cells and intercellular adhesion in addition to processes involved in cell cycle--proliferation, quiescence, apoptosis, and necrosis--in the tumour model. More importantly, we consider cell mutation that gives rise to different phenotypes and therefore a tumour with heterogeneous population of cells. A new phenotype is probabilistically chosen and has the ability to survive at lower levels of nutrient concentration and reproduce faster. We show that heterogeneity of cells that compose a tumour leads to its irregular growth and that avascular growth is not supported for tumours of diameter above 18 mm. We compare results from our growth simulation with existing experimental data on Ehrlich ascites carcinoma and tumour spheroid cultures and show that our results are in good agreement with the experimental findings.

  1. Modeling Molecular Systems at Extreme Pressure by an Extension of the Polarizable Continuum Model (PCM) Based on the Symmetry-Adapted Cluster-Configuration Interaction (SAC-CI) Method: Confined Electronic Excited States of Furan as a Test Case.

    PubMed

    Fukuda, Ryoichi; Ehara, Masahiro; Cammi, Roberto

    2015-05-12

    Novel molecular photochemistry can be developed by combining high pressure and laser irradiation. For studying such high-pressure effects on the confined electronic ground and excited states, we extend the PCM (polarizable continuum model) SAC (symmetry-adapted cluster) and SAC-CI (SAC-configuration interaction) methods to the PCM-XP (extreme pressure) framework. By using the PCM-XP SAC/SAC-CI method, molecular systems in various electronic states can be confined by polarizable media in a smooth and flexible way. The PCM-XP SAC/SAC-CI method is applied to a furan (C4H4O) molecule in cyclohexane at high pressure (1-60 GPa). The relationship between the calculated free-energy and cavity volume can be approximately represented with the Murnaghan equation of state. The excitation energies of furan in cyclohexane show blueshifts with increasing pressure, and the extents of the blueshifts significantly depend on the character of the excitations. Particularly large confinement effects are found in the Rydberg states. The energy ordering of the lowest Rydberg and valence states alters under high-pressure. The pressure effects on the electronic structure may be classified into two contributions: a confinement of the molecular orbital and a suppression of the mixing between the valence and Rydberg configurations. The valence or Rydberg character in an excited state is, therefore, enhanced under high pressure.

  2. The Cellular State Determines the Effect of Melatonin on the Survival of Mixed Cerebellar Cell Culture

    PubMed Central

    Franco, Daiane Gil; Markus, Regina P.

    2014-01-01

    The constitutive activation of nuclear factor-κB (NF-κB), a key transcription factor involved in neuroinflammation, is essential for the survival of neurons in situ and of cerebellar granule cells in culture. Melatonin is known to inhibit the activation of NF-κB and has a cytoprotective function. In this study, we evaluated whether the cytoprotective effect of melatonin depends on the state of activation of a mixed cerebellar culture that is composed predominantly of granule cells; we tested the effect of melatonin on cultured rat cerebellar cells stimulated or not with lipopolysaccharide (LPS). The addition of melatonin (0.1 nM–1 µM) reduced the survival of naïve cells while inhibiting LPS-induced cell death. Melatonin (100 nM) transiently (15 min) inhibited the nuclear translocation of both NF-κB dimers (p50/p50, p50/RelA) and, after 60 min, increased the activation of p50/RelA. Melatonin-induced p50/RelA activity in naïve cells resulted in the transcription of inducible nitric oxide synthase (iNOS) and the production of NO. Otherwise, in cultures treated with LPS, melatonin blocked the LPS-induced activation of p50/RelA and the reduction in p50/p50 levels and inhibited iNOS expression and NO synthesis. Therefore, melatonin in vehicle-treated cells induces cell death, while it protects against LPS-induced cytotoxicity. In summary, we confirmed that melatonin is a neuroprotective drug when cerebellar cells are challenged; however, melatonin can also lead to cell death when the normal balance of the NF-κB pathway is disturbed. Our data provide a mechanistic basis for understanding the influence of cell context on the final output response of melatonin. PMID:25184316

  3. Internal photopumping of Nd3+ (2H9/2, 4F5/2) states in yttrium aluminum garnet by excitation transfer from oxygen deficiency centers and Fe3+ continuum emission

    NASA Astrophysics Data System (ADS)

    Hewitt, J. D.; Spinka, T. M.; Senin, A. A.; Eden, J. G.

    2011-07-01

    Photoexcitation of Nd3+ (2H9/2, 4F5/2) states by the broad (˜70 nm FWHM), near-infrared continuum provided by Fe3+ has been observed at 300 K in bulk yttrium aluminum garnet (YAG) crystals doped with trace concentrations (<50 ppm) of Fe, Cr, and Eu. Irradiation of YAG at 248 nm with a KrF laser, which excites the oxygen deficiency center (ODC) in YAG having peak absorption at ˜240 nm, culminates in ODC→Fe3+ excitation transfer and subsequent Fe3+ emission. This internal optical pumping mechanism for rare earth ions is unencumbered by the requirement for donor-acceptor proximity that constrains conventional Förster-Dexter excitation transfer in co-doped crystals.

  4. Gating mechanism of mechanosensitive channel of large conductance: a coupled continuum mechanical-continuum solvation approach.

    PubMed

    Zhu, Liangliang; Wu, Jiazhong; Liu, Ling; Liu, Yilun; Yan, Yuan; Cui, Qiang; Chen, Xi

    2016-12-01

    Gating transition of the mechanosensitive channel of large conductance (MscL) represents a good example of important biological processes that are difficult to describe using atomistic simulations due to the large (submicron) length scale and long (millisecond) time scale. Here we develop a novel computational framework that tightly couples continuum mechanics with continuum solvation models to study the detailed gating behavior of E. coli-MscL. The components of protein molecules are modeled by continuum elements that properly describe their shape, material properties and physicochemical features (e.g., charge distribution). The lipid membrane is modeled as a three-layer material in which the lipid head group and tail regions are treated separately, taking into account the fact that fluidic lipid bilayers do not bear shear stress. Coupling between mechanical and chemical responses of the channel is realized by an iterative integration of continuum mechanics (CM) modeling and continuum solvation (CS) computation. Compared to previous continuum mechanics studies, the present model is capable of capturing the most essential features of the gating process in a much more realistic fashion: due mainly to the apolar solvation contribution, the membrane tension for full opening of MscL is reduced substantially to the experimental measured range. Moreover, the pore size stabilizes constantly during gating because of the intricate interactions of the multiple components of the system, implying the mechanism for sub-conducting states of MscL gating. A significant fraction ([Formula: see text]2/3) of the gating membrane strain is required to reach the first sub-conducting state of our model, which is featured with a relative conductance of 0.115 to the fully opened state. These trends agree well with experimental observations. We anticipate that the coupled CM/CS modeling framework is uniquely suited for the analysis of many biomolecules and their assemblies under external

  5. Continuum Modeling of Facet Evolution

    NASA Astrophysics Data System (ADS)

    Kandel, Daniel

    2000-03-01

    Standard continuum models of surface dynamics are very useful for studying thin film evolution on the micron length scale. Unfortunately, they are inadequate below the roughening transition, since they do not appropriately describe faceting. Our goal is to propose a continuum approach which deals with facet dynamics in a physically accurate way. We studied in detail the dynamics of faceting in simple submicron surface structures [1], and proposed two approaches for the development of continuum models. First, we rigorously derived continuum kinetic models of the systems of interest, starting from step flow models. These models break down at singular points, which we identify as facet edges. The models are not applicable on facets, and the surface profile is obtained as a solution of the continuum model with boundary conditions at the singular points. Secondly, we showed [2] that if the existence of both steps and anti-steps in regions of small surface slope is taken into account, it is possible to construct continuum models that are valid even on facets. The solutions of both types of continuum models are in excellent agreement with step flow models. The resulting surface profiles are of relevance to experiments on decay of one dimensional periodic gratings. Our work points to a possible general continuum model for an accurate description of kinetics of crystalline surfaces below the roughening transition. [1] N. Israeli and D. Kandel, Phys. Rev. Lett. 80, 3300 (1998); N. Israeli and D. Kandel, Phys. Rev. B 60, 5946 (1999). [2] N. Israeli and D. Kandel, preprint.

  6. Rotational bands in the continuum illustrated by 8Be results

    NASA Astrophysics Data System (ADS)

    Garrido, E.; Jensen, A. S.; Fedorov, D. V.

    2013-08-01

    We use the α-α cluster model to describe the properties of 8Be. The rotational energy sequence of the (0+,2+,4+) resonances are reproduced with the complex energy scaling technique for Ali-Bodmer and Buck potentials. However, both static and transition probabilities are far from the rotational values. We trace this observation to the prominent continuum properties of the 2+ and 4+ resonances. They resemble free continuum solutions although still exhibit strong collective rotational character. We compare with cluster models and discuss concepts of rotations in the continuum in connection with such central quantities as transition probabilities, inelastic cross sections, and resonance widths. We compute the 6+ and 8+ S-matrix poles and discuss properties of this possible continuation of the band beyond the known 4+ state. Regularization of diverging quantities is discussed to extract observable continuum properties. We formulate the division of electromagnetic transition probabilities into interfering contributions from resonance-resonance, continuum-resonance, resonance-continuum, and continuum-continuum transitions.

  7. Continuum limbed robots for locomotion

    NASA Astrophysics Data System (ADS)

    Mutlu, Alper

    This thesis focuses on continuum robots based on pneumatic muscle technology. We introduce a novel approach to use these muscles as limbs of lightweight legged robots. The flexibility of the continuum legs of these robots offers the potential to perform some duties that are not possible with classical rigid-link robots. Potential applications are as space robots in low gravity, and as cave explorer robots. The thesis covers the fabrication process of continuum pneumatic muscles and limbs. It also provides some new experimental data on this technology. Afterwards, the designs of two different novel continuum robots - one tripod, one quadruped - are introduced. Experimental data from tests using the robots is provided. The experimental results are the first published example of locomotion with tripod and quadruped continuum legged robots. Finally, discussion of the results and how far this technology can go forward is presented.

  8. Relativistic Continuum Shell Model

    NASA Astrophysics Data System (ADS)

    Grineviciute, Janina; Halderson, Dean

    2011-04-01

    The R-matrix formalism of Lane and Thomas has been extended to the relativistic case so that the many-coupled channels problem may be solved for systems in which binary breakup channels satisfy a relative Dirac equation. The formalism was previously applied to the relativistic impulse approximation RIA and now we applied it to Quantum Hadrodynamics QHD in the continuum Tamm-Dancoff approximation TDA with the classical meson fields replaced by one-meson exchange potentials. None of the published QHD parameters provide a decent fit to the 15 N + p elastic cross section. The deficiency is also evident in inability of the QHD parameters with the one meson exchange potentials to reproduce the QHD single particle energies. Results with alternate parameters sets are presented. A. M. Lane and R. G. Thomas, R-Matrix Theory of Nuclear Reactions, Reviews of Modern Physics, 30 (1958) 257

  9. Electron-ion continuum-continuum mixing in dissociative recombination

    NASA Technical Reports Server (NTRS)

    Guberman, Steven L.

    1993-01-01

    In recent calculations on the dissociative recombination (DR) of the v=1 vibrational level of the ground state of N2(+), N2(+)(v=1) + e(-) yields N + N, we have observed an important continuun-continuum mixing process involving the open channels on both sides of N2(+)(v=1) + e(-) yields N2(+)(v=0) + e(-). In vibrational relaxation by electron impact (immediately above) the magnitude of the cross section depends upon the strength of the interaction between these continua. In DR of the v=1 ion level, these continua can also interact in the entrance channel, and the mixing can have a profound effect upon the DR cross section from v=1, as we illustrate in this paper. In our theoretical calculations of N2(+) DR using multichannel quantum defect theory (MQDT), the reactants and products in the two above equations are described simultaneously. This allows us to calculate vibrational relaxation and excitation cross sections as well as DR cross sections. In order to understand the mixing described above, we first present a brief review of the prior results for DR of the v=0 level of N2(+).

  10. Defining the Molecular-Cellular-Field Continuum of Mercury Detoxification

    SciTech Connect

    Summers, Anne O.

    2016-04-25

    Hg is of special interest to DOE due to past intensive use in manufacture of nuclear weapons at the Oak Ridge Reservation (ORR). Because of its facile oxidation/reduction [Hg(II)/Hg(0)] chemistry, ability to bond to carbon [as in highly toxic methylmercury: MeHg(I)] and its unique physical properties [e.g., volatility of Hg(0)], Hg has a complex environmental cycle involving soils, sediments, waterways and the atmosphere and including biotic and abiotic chemical and physical transport and transformations.1 Understanding such processes well enough to design stewardship plans that minimize negative impacts in diverse ecological settings requires rich knowledge of the contributing abiotic and biotic processes. Prokaryotes are major players in the global Hg cycle. Facultative and anaerobic bacteria can form MeHg(I) with consequent intoxication of wildlife and humans. Sustainable stewardship of Hg-contaminated sites requires eliminating not only MeHg(I) but also the Hg(II) substrate for methylation. Fortunately, a variety of mercury resistant (HgR) aerobic and facultative bacteria and archaea can do both things. Prokaryotes harboring narrow or broad Hg resistance (mer) loci detoxify Hg(II) or RHg(I), respectively, to relatively inert, less toxic, volatile Hg(0). HgR microbes are enriched in highly contaminated sites and extensive field data show they depress levels of MeHg >500-fold in such zones2. So, enhancing the natural capacity of indigenous HgR microbes to remove Hg(II) and RHg(I) from soils, sediments and waterways is a logical component of a comprehensive plan for clean up and stewardship of contaminated sites.

  11. Defining the Molecular-Cellular-Field Continuum of Mercury Detoxification

    SciTech Connect

    Miller, Susan M.

    2014-09-04

    Hg is of special interest to DOE due to past use at the Oak Ridge Reservation (ORR). Its facile redox [Hg2+/0] chemistry, bonding to carbon [e.g. MeHg+] and unique physical properties [e.g., Hg0 volatility] underlie a complex global Hg cycle involving biotic and abiotic chemical and physical transport and transformations in soils, sediments, waterways and the atmosphere. Facultative and anaerobic bacteria make MeHg+, which is neurotoxic to wildlife and humans. Sustainable stewardship requires eliminating both MeHg+ and even more toxic Hg2+, which is also the substrate for methylation. The proteins encoded by the mer locus in aerobic and facultative mercury resistant (HgR) bacteria convert soil or waterborne Hg2+ or MeHg+ to less toxic, gaseous Hg0. HgR microbes live in highly Hg-contaminated sites and depress MeHg+ formation >500-fold in such zones. So, enhancing the capacity of natural HgR microbes to remove Hg2+/MeHg+ from wetlands and waterways is a logical component of contaminated site stewardship. To apply enhancement in the field requires knowing how the HgR pathway works including the metabolic demands it makes on the cell, i.e., the entire cell is the relevant catalytic unit. HgR loci occur in metabolically diverse bacteria and unique mer-host co-evolution has been found. In this project we extended our previous studies of mer enzymes in γ-proteobacteria, which are abundant in high Hg areas of the ORR to include studies of mer enzymes from HgR α-proteobacteria and HgR actinobacteria, which also increase in the high Hg regions of the ORR. Specifically, we (1) examined interactions between structural compoenents of MerA and MerB enzymes from γ-proteobacteria, (2) investigated effects of mutations on kinetic efficiency of Hg2+ reduction by γ-proteobacterial MerA, (3) cloned and performed initital characterization of MerA and MerB enzymes from Streptomyces lividans, an actinobacterium, (4) cloned and performed initial characterization of a fused MerB-MerA protein from Ochrobactrum anthropi, an α-proteobacterium, (5) investigate the extent of Hg isotope fractionation that occurs with purified γ-proteobacterial MerA.

  12. Uses of Continuum Radiation in the AXAF Calibration

    NASA Technical Reports Server (NTRS)

    Kolodziejczak, J. J.; Austin, R. A.; Eisner, R. F.; ODell, S. L.; Sulkanen, M. E.; Swartz, D. A.; Tennant, A. F.; Weisskopf, M. C.; Zirnstein, G.; McDermott, W. C.

    1997-01-01

    X-ray calibration of the Advanced X-ray Astrophysics Facility (AXAF) observatory at the MSFC X-Ray Calibration Facility (XRCF) made novel use of the x-ray continuum from a conventional electron-impact source. Taking advantage of the good spectral resolution of solid-state detectors, continuum measurements proved advantageous in calibrating the effective area of AXAF's High-Resolution Mirror Assembly (HRMA) and in verifying its alignment to the XRCF's optical axis.

  13. The Paranoid-Depressive Continuum

    ERIC Educational Resources Information Center

    Johnson, Betty J.

    1977-01-01

    Few investigators have attempted to lay a conceptual base for comparative studies of paranoia and depression within a single general framework. The paranoid-depressive continuum is an attempt to develop such a framework. (Author)

  14. Quantitative X-ray - UV Line and Continuum Spectroscopy with Application to AGN: State-Specific Hydrogenic Recombination Cooling Coefficients for a Wide Range of Conditions

    NASA Technical Reports Server (NTRS)

    LaMothe, J.; Ferland, Gary J.

    2002-01-01

    Recombination cooling, in which a free electron emits light while being captured to an ion, is an important cooling process in photoionized clouds that are optically thick or have low metallicity. State specific rather than total recombination cooling rates are needed since the hydrogen atom tends to become optically thick in high-density regimes such as Active Galactic Nuclei. This paper builds upon previous work to derive the cooling rate over the full temperature range where the process can be a significant contributor in a photoionized plasma. We exploit the fact that the recombination and cooling rates are given by intrinsically similar formulae to express the cooling rate in terms of the closely related radiative recombination rate. We give an especially simple but accurate approximation that works for any high hydrogenic level and can be conveniently employed in large-scale numerical simulations.

  15. Atomistic to continuum modeling of solidification microstructures

    SciTech Connect

    Karma, Alain; Tourret, Damien

    2015-09-26

    We summarize recent advances in modeling of solidification microstructures using computational methods that bridge atomistic to continuum scales. We first discuss progress in atomistic modeling of equilibrium and non-equilibrium solid–liquid interface properties influencing microstructure formation, as well as interface coalescence phenomena influencing the late stages of solidification. The latter is relevant in the context of hot tearing reviewed in the article by M. Rappaz in this issue. We then discuss progress to model microstructures on a continuum scale using phase-field methods. We focus on selected examples in which modeling of 3D cellular and dendritic microstructures has been directly linked to experimental observations. Finally, we discuss a recently introduced coarse-grained dendritic needle network approach to simulate the formation of well-developed dendritic microstructures. The approach reliably bridges the well-separated scales traditionally simulated by phase-field and grain structure models, hence opening new avenues for quantitative modeling of complex intra- and inter-grain dynamical interactions on a grain scale.

  16. Atomistic to continuum modeling of solidification microstructures

    DOE PAGES

    Karma, Alain; Tourret, Damien

    2015-09-26

    We summarize recent advances in modeling of solidification microstructures using computational methods that bridge atomistic to continuum scales. We first discuss progress in atomistic modeling of equilibrium and non-equilibrium solid–liquid interface properties influencing microstructure formation, as well as interface coalescence phenomena influencing the late stages of solidification. The latter is relevant in the context of hot tearing reviewed in the article by M. Rappaz in this issue. We then discuss progress to model microstructures on a continuum scale using phase-field methods. We focus on selected examples in which modeling of 3D cellular and dendritic microstructures has been directly linked tomore » experimental observations. Finally, we discuss a recently introduced coarse-grained dendritic needle network approach to simulate the formation of well-developed dendritic microstructures. The approach reliably bridges the well-separated scales traditionally simulated by phase-field and grain structure models, hence opening new avenues for quantitative modeling of complex intra- and inter-grain dynamical interactions on a grain scale.« less

  17. Four-body continuum-discretized coupled-channels calculations

    SciTech Connect

    Rodriguez-Gallardo, M.; Arias, J. M.; Moro, A. M.; Gomez-Camacho, J.; Thompson, I. J.; Tostevin, J. A.

    2009-11-15

    The development of a continuum-bin scheme of discretization for three-body projectiles is necessary for studies of reactions of Borromean nuclei such as {sup 6}He within the continuum-discretized coupled-channels approach. Such a procedure, for constructing bin states on selected continuum energy intervals, is formulated and applied for the first time to reactions of a three-body projectile. The continuum representation uses the eigenchannel expansion of the three-body S matrix. The method is applied to the challenging case of the {sup 6}He+{sup 208}Pb reaction at 22 MeV, where an accurate treatment of both the Coulomb and the nuclear interactions with the target is necessary.

  18. Mortality by neoplasia and cellular telephone base stations in the Belo Horizonte municipality, Minas Gerais state, Brazil.

    PubMed

    Dode, Adilza C; Leão, Mônica M D; Tejo, Francisco de A F; Gomes, Antônio C R; Dode, Daiana C; Dode, Michael C; Moreira, Cristina W; Condessa, Vânia A; Albinatti, Cláudia; Caiaffa, Waleska T

    2011-09-01

    Pollution caused by the electromagnetic fields (EMFs) of radio frequencies (RF) generated by the telecommunication system is one of the greatest environmental problems of the twentieth century. The purpose of this research was to verify the existence of a spatial correlation between base station (BS) clusters and cases of deaths by neoplasia in the Belo Horizonte municipality, Minas Gerais state, Brazil, from 1996 to 2006 and to measure the human exposure levels to EMF where there is a major concentration of cellular telephone transmitter antennas. A descriptive spatial analysis of the BSs and the cases of death by neoplasia identified in the municipality was performed through an ecological-epidemiological approach, using georeferencing. The database employed in the survey was composed of three data banks: 1. death by neoplasia documented by the Health Municipal Department; 2. BSs documented in ANATEL ("Agência Nacional de Telecomunicações": 'Telecommunications National Agency'); and 3. census and demographic city population data obtained from official archives provided by IBGE ("Instituto Brasileiro de Geografia e Estatística": 'Brazilian Institute of Geography and Statistics'). The results show that approximately 856 BSs were installed through December 2006. Most (39.60%) of the BSs were located in the "Centro-Sul" ('Central-Southern') region of the municipality. Between 1996 and 2006, 7191 deaths by neoplasia occurred and within an area of 500 m from the BS, the mortality rate was 34.76 per 10,000 inhabitants. Outside of this area, a decrease in the number of deaths by neoplasia occurred. The greatest accumulated incidence was 5.83 per 1000 in the Central-Southern region and the lowest incidence was 2.05 per 1000 in the Barreiro region. During the environmental monitoring, the largest accumulated electric field measured was 12.4 V/m and the smallest was 0.4 V/m. The largest density power was 40.78 μW/cm(2), and the smallest was 0.04 μW/cm(2).

  19. Continuum modeling of deformation and aggregation of red blood cells.

    PubMed

    Yoon, Daegeun; You, Donghyun

    2016-07-26

    In order to gain better understanding for rheology of an isolated red blood cell (RBC) and a group of multiple RBCs, new continuum models for describing mechanical properties of cellular structures of an RBC and inter-cellular interactions among multiple RBCs are developed. The viscous property of an RBC membrane, which characterizes dynamic behaviors of an RBC under stress loading and unloading processes, is determined using a generalized Maxwell model. The present model is capable of predicting stress relaxation and stress-strain hysteresis, of which prediction is not possible using the commonly used Kelvin-Voigt model. Nonlinear elasticity of an RBC is determined using the Yeoh hyperelastic material model in a framework of continuum mechanics using finite-element approximation. A novel method to model inter-cellular interactions among multiple adjacent RBCs is also developed. Unlike the previous modeling approaches for aggregation of RBCs, where interaction energy for aggregation is curve-fitted using a Morse-type potential function, the interaction energy is analytically determined. The present aggregation model, therefore, allows us to predict various effects of physical parameters such as the osmotic pressure, the thickness of a glycocalyx layer, the penetration depth, and the permittivity, on the depletion and electrostatic energy among RBCs. Simulations for elongation and recovery deformation of an RBC and for aggregation of multiple RBCs are conducted to evaluate the efficacy of the present continuum modeling methods.

  20. Multiscale modeling of cellular epigenetic states: stochasticity in molecular networks, chromatin folding in cell nuclei, and tissue pattern formation of cells

    PubMed Central

    Liang, Jie; Cao, Youfang; Gürsoy, Gamze; Naveed, Hammad; Terebus, Anna; Zhao, Jieling

    2016-01-01

    Genome sequences provide the overall genetic blueprint of cells, but cells possessing the same genome can exhibit diverse phenotypes. There is a multitude of mechanisms controlling cellular epigenetic states and that dictate the behavior of cells. Among these, networks of interacting molecules, often under stochastic control, depending on the specific wirings of molecular components and the physiological conditions, can have a different landscape of cellular states. In addition, chromosome folding in three-dimensional space provides another important control mechanism for selective activation and repression of gene expression. Fully differentiated cells with different properties grow, divide, and interact through mechanical forces and communicate through signal transduction, resulting in the formation of complex tissue patterns. Developing quantitative models to study these multi-scale phenomena and to identify opportunities for improving human health requires development of theoretical models, algorithms, and computational tools. Here we review recent progress made in these important directions. PMID:27480462

  1. Lagrangian continuum dynamics in ALEGRA.

    SciTech Connect

    Wong, Michael K. W.; Love, Edward

    2007-12-01

    Alegra is an ALE (Arbitrary Lagrangian-Eulerian) multi-material finite element code that emphasizes large deformations and strong shock physics. The Lagrangian continuum dynamics package in Alegra uses a Galerkin finite element spatial discretization and an explicit central-difference stepping method in time. The goal of this report is to describe in detail the characteristics of this algorithm, including the conservation and stability properties. The details provided should help both researchers and analysts understand the underlying theory and numerical implementation of the Alegra continuum hydrodynamics algorithm.

  2. Submillimeter Continuum Observations of Comets

    NASA Technical Reports Server (NTRS)

    Jewitt, David

    1998-01-01

    The aim of this proposal was to study the submillimeter continuum emission from comets. The study was based mainly on the exploitation of the world's leading submillimeter telescope, the JCMT (James Clerk Maxwell Telescope) on Mauna Kea. Submillimeter wavelengths provide a unique view of cometary physics for one main reason. The cometary size distribution is such that the scattering cross-section is dominated by small dust grains, while the mass is dominated by the largest particles. Submillimeter continuum radiation samples cometary particles much larger than those sampled by more common observations at shorter (optical and infrared) wavelengths and therefore provides a nearly direct measure of the cometary dust mass.

  3. Quasiparticle-continuum level repulsion in a quantum magnet

    SciTech Connect

    Plumb, K. W.; Hwang, Kyusung; Qiu, Y.; Harriger, Leland W.; Granroth, G.  E.; Kolesnikov, Alexander I.; Shu, G. J.; Chou, F. C.; Rüegg, Ch.; Kim, Yong Baek; Kim, Young-June

    2015-11-30

    When the energy eigenvalues of two coupled quantum states approach each other in a certain parameter space, their energy levels repel each other and level crossing is avoided. Such level repulsion, or avoided level crossing, is commonly used to describe the dispersion relation of quasiparticles in solids. But, little is known about the level repulsion when more than two quasiparticles are present; for example, in a strongly interacting quantum system where a quasiparticle can spontaneously decay into a many-particle continuum. Here we show that even in this case level repulsion exists between a long-lived quasiparticle state and a continuum. Here, we observe a renormalization of the quasiparticle dispersion relation due to the presence of the continuum of multi-quasiparticle states, in our fine-resolution neutron spectroscopy study of magnetic quasiparticles in the frustrated quantum magnet BiCu2PO6.

  4. Quasiparticle-continuum level repulsion in a quantum magnet

    DOE PAGES

    Plumb, K. W.; Hwang, Kyusung; Qiu, Y.; ...

    2015-11-30

    When the energy eigenvalues of two coupled quantum states approach each other in a certain parameter space, their energy levels repel each other and level crossing is avoided. Such level repulsion, or avoided level crossing, is commonly used to describe the dispersion relation of quasiparticles in solids. But, little is known about the level repulsion when more than two quasiparticles are present; for example, in a strongly interacting quantum system where a quasiparticle can spontaneously decay into a many-particle continuum. Here we show that even in this case level repulsion exists between a long-lived quasiparticle state and a continuum. Here,more » we observe a renormalization of the quasiparticle dispersion relation due to the presence of the continuum of multi-quasiparticle states, in our fine-resolution neutron spectroscopy study of magnetic quasiparticles in the frustrated quantum magnet BiCu2PO6.« less

  5. Shell model states in the continuum

    NASA Astrophysics Data System (ADS)

    Shirokov, A. M.; Mazur, A. I.; Mazur, I. A.; Vary, J. P.

    2016-12-01

    We suggest a method for calculating scattering phase shifts and energies and widths of resonances which utilizes only eigenenergies obtained in variational calculations with oscillator basis and their dependence on oscillator basis spacing ℏ Ω . We make use of simple expressions for the S matrix at eigenstates of a finite (truncated) Hamiltonian matrix in the oscillator basis obtained in the HORSE (J -matrix) formalism of quantum scattering theory. The validity of the suggested approach is verified in calculations with model Woods-Saxon potentials and applied to calculations of n α resonances and nonresonant scattering using the no-core shell model.

  6. A nonlocal continuum model for biological aggregation.

    PubMed

    Topaz, Chad M; Bertozzi, Andrea L; Lewis, Mark A

    2006-10-01

    We construct a continuum model for biological aggregations in which individuals experience long-range social attraction and short-range dispersal. For the case of one spatial dimension, we study the steady states analytically and numerically. There exist strongly nonlinear states with compact support and steep edges that correspond to localized biological aggregations, or clumps. These steady-state clumps are reached through a dynamic coarsening process. In the limit of large population size, the clumps approach a constant density swarm with abrupt edges. We use energy arguments to understand the nonlinear selection of clump solutions, and to predict the internal density in the large population limit. The energy result holds in higher dimensions as well, and is demonstrated via numerical simulations in two dimensions.

  7. The climate continuum revisited

    NASA Astrophysics Data System (ADS)

    Emile-Geay, J.; Wang, J.; Partin, J. W.

    2015-12-01

    A grand challenge of climate science is to quantify the extent of natural variability on adaptation-relevant timescales (10-100y). Since the instrumental record is too short to adequately estimate the spectra of climate measures, this information must be derived from paleoclimate proxies, which may harbor a many-to-one, non-linear (e.g. thresholded) and non-stationary relationship to climate. In this talk, I will touch upon the estimation of climate scaling behavior from climate proxies. Two case studies will be presented: an investigation of scaling behavior in a reconstruction of global surface temperature using state-of- the-art data [PAGES2K Consortium, in prep] and methods [Guillot et al., 2015]. Estimating the scaling exponent β in spectra derived from this reconstruction, we find that 0 < β < 1 in most regions, suggesting long-term memory. Overall, the reconstruction-based spectra are steeper than the ones based on an instrumental dataset [HadCRUT4.2, Morice et al., 2012], and those estimated from PMIP3/CMIP5 models, suggesting the climate system is more energetic at multidecadal to centennial timescales than can be inferred from the short instrumental record or from the models developed to reproduce it [Laepple and Huybers, 2014]. an investigation of scaling behavior in speleothems records of tropical hydroclimate. We will make use of recent advances in proxy system modeling [Dee et al., 2015] and investigate how various aspects of the speleothem system (karst dynamics, age uncertainties) may conspire to bias the estimate of scaling behavior from speleothem timeseries. The results suggest that ignoring such complications leads to erroneous inferences about hydroclimate scaling. References Dee, S. G., J. Emile-Geay, M. N. Evans, Allam, A., D. M. Thompson, and E. J. Steig (2015), J. Adv. Mod. Earth Sys., 07, doi:10.1002/2015MS000447. Guillot, D., B. Rajaratnam, and J. Emile-Geay (2015), Ann. Applied. Statist., pp. 324-352, doi:10.1214/14-AOAS794. Laepple, T

  8. Homogenization of a Cauchy continuum towards a micromorphic continuum

    NASA Astrophysics Data System (ADS)

    Hütter, Geralf

    2017-02-01

    The micromorphic theory of Eringen and Mindlin, including special cases like strain gradient theory or Cosserat theory, is widely used to model size effects and localization phenomena. The heuristic construction of such theories based on thermodynamic considerations is well-established. However, the identification of corresponding constitutive laws and of the large number of respective constitutive parameters limits the practical application of such theories. In the present contribution, a closed procedure for the homogenization of a Cauchy continuum at the microscale towards a fully micromorphic continuum is derived including explicit definitions of all involved generalized macroscopic stress and deformation measures. The boundary value problem to be solved on the microscale is formulated either for using static or kinematic boundary conditions. The procedure is demonstrated with an example.

  9. Continuum effects in nuclear transfer reactions

    SciTech Connect

    Marta, H. D.; Donangelo, R.; Fernandez Niello, J. O.; Pacheco, A. J.

    2007-02-12

    We develop a semiclassical calculation for nuclear transfer reactions where the continuum is treated in an exact way, and compare the results with those of a treatment in which the continuum is neglected. We conclude that the influence of the continuum is very important for weakly bound reactants.

  10. Mathematical Modeling in Continuum Mechanics

    NASA Astrophysics Data System (ADS)

    Temam, Roger; Miranville, Alain

    2005-06-01

    Temam and Miranville present core topics within the general themes of fluid and solid mechanics. The brisk style allows the text to cover a wide range of topics including viscous flow, magnetohydrodynamics, atmospheric flows, shock equations, turbulence, nonlinear solid mechanics, solitons, and the nonlinear Schrödinger equation. This second edition will be a unique resource for those studying continuum mechanics at the advanced undergraduate and beginning graduate level whether in engineering, mathematics, physics or the applied sciences. Exercises and hints for solutions have been added to the majority of chapters, and the final part on solid mechanics has been substantially expanded. These additions have now made it appropriate for use as a textbook, but it also remains an ideal reference book for students and anyone interested in continuum mechanics.

  11. The Influence of Metal Stress on the Availability and Redox State of Ascorbate, and Possible Interference with Its Cellular Functions

    PubMed Central

    Bielen, An; Remans, Tony; Vangronsveld, Jaco; Cuypers, Ann

    2013-01-01

    Worldwide, metals have been distributed to excessive levels in the environment due to industrial and agricultural activities. Plants growing on soils contaminated with excess levels of metals experience a disturbance of the cellular redox balance, which leads to an augmentation of reactive oxygen species (ROS). Even though the increased ROS levels can cause cellular damage, controlled levels play an important role in modulating signaling networks that control physiological processes and stress responses. Plants control ROS levels using their antioxidative defense system both under non-stress conditions, as well as under stress conditions such as exposure to excess metals. Ascorbate (AsA) is a well-known and important component of the plant’s antioxidative system. As primary antioxidant, it can reduce ROS directly and indirectly via ascorbate peroxidase in the ascorbate–glutathione cycle. Furthermore, AsA fulfills an essential role in physiological processes, some of which are disturbed by excess metals. In this review, known direct effects of excess metals on AsA biosynthesis and functioning will be discussed, as well as the possible interference of metals with the role of AsA in physiological and biochemical processes. PMID:23519107

  12. Continuum description for jointed media

    SciTech Connect

    Thomas, R.K.

    1982-04-01

    A general three-dimensional continuum description is presented for a material containing regularly spaced and approximately parallel jointing planes within a representative elementary volume. Constitutive relationships are introduced for linear behavior of the base material and nonlinear normal and shear behavior across jointing planes. Furthermore, a fracture permeability tensor is calculated so that deformation induced alterations to the in-situ values can be measured. Examples for several strain-controlled loading paths are presented.

  13. Continuum radiation in planetary magnetospheres

    NASA Technical Reports Server (NTRS)

    Kurth, W. S.

    1991-01-01

    With the completion of the Voyager tour of the outer planets, radio and plasma wave instruments have executed the first survey of the wave spectra of Earth, Jupiter, Saturn, Uranus, and Neptune. One of the most notable conclusions of this survey is that there is a great deal of qualitative similarity in both the plasma wave and radio wave spectra from one magnetosphere to the next. In particular, in spite of detailed differences, most of the radio emissions at each of the planets have been tentatively classified into two primary categories. First, the most intense emissions are generally associated with the cyclotron maser instability. Second, a class of weaker emissions can be found at each of the magnetospheres which appears to be the result of conversion from intense electrostatic emissions at the upper hybrid resonance frequency into (primarily) ordinary mode radio emission. It is this second category, often referred to as nonthermal continuum radiation, which we will discuss in this review. We review the characteristics of the continuum spectrum at each of the planets, discuss the source region and direct observations of the generation of the emissions where available, and briefly describe the theories for the generation of the emissions. Over the past few years evidence has increased that the linear mode conversion of electrostatic waves into the ordinary mode can account for at least some of the continuum radiation observed. There is no definitive evidence which precludes the possibility that a nonlinear mechanism may also be important.

  14. 77 FR 45367 - Continuum of Care Homeless Assistance Grant Application; Continuum of Care Application

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-31

    ... URBAN DEVELOPMENT Continuum of Care Homeless Assistance Grant Application; Continuum of Care Application... subject proposal. Pre-established communities, called Continuums of Care (CoC), will complete the Exhibit 1 of the Continuum of Care Homeless Assistance application which collects data about the...

  15. Steady-state and time-resolved two-photon fluorescence microscopy: a versatile tool for probing cellular environment and function

    NASA Astrophysics Data System (ADS)

    Denicke, Stefan; Ehlers, Jan-Eric; Niesner, Raluca; Quentmeier, Stefan; Gericke, Karl-Heinz

    2007-09-01

    In the last decade, the two-photon fluorescence laser-scanning microscopy (TPLSM) has become an indispensable tool for the bioscientific and biomedical research. TPLSM techniques as well as their applications are currently experiencing a dramatic evolution and represent the focus of many biophysical research projects. In this work, we compare in detail two steady-state TPLSM techniques, i.e. single-beam scanning microscopy combined with point-detection (SB-PMT) and multi-beam scanning microscopy combined with synchronous detection (MB-CCD), as far as their technical characteristics relevant for the bioscientific research are concerned, i.e. optical performance and imaging speed. We demonstrate that the SB-PMT technique is more adequate for deep-tissue imaging (few 100 μm depth) than the MB-CCD technique, whereas only the MB-CCD technique enables high-speed imaging for characterizing the dynamics of fast biological phenomena. Novel applications of these techniques are additionally discussed. Moreover, we employ a time-resolved TPLSM technique, i.e. biexponential fluorescence lifetime imaging based on the cellular fluorescence of the nicotinamide pyridine dinucleotides NADH and NADPH, which allows us to probe for the first time the redox cellular metabolism of MIN6 cells (mutated insulin producing pancreatic β-cells) as well as to show the potential of this method for the specific and dynamic investigation of NADH- and NADPH-dependent cellular processes.

  16. Inside-out Signaling Promotes Dynamic Changes in the Carcinoembryonic Antigen-related Cellular Adhesion Molecule 1 (CEACAM1) Oligomeric State to Control Its Cell Adhesion Properties*

    PubMed Central

    Patel, Prerna C.; Lee, Hannah S. W.; Ming, Aaron Y. K.; Rath, Arianna; Deber, Charles M.; Yip, Christopher M.; Rocheleau, Jonathan V.; Gray-Owen, Scott D.

    2013-01-01

    Cell-cell contacts are fundamental to multicellular organisms and are subject to exquisite levels of control. The carcinoembryonic antigen-related cell adhesion molecule 1 (CEACAM1) can engage in both cis-homophilic (parallel) oligomerization and trans-homophilic (anti-parallel) binding. In this study, we establish that the CEACAM1 transmembrane domain has a propensity to form cis-dimers via the transmembrane-embedded 432GXXXG436 motif and that this basal state is overcome when activated calmodulin binds to the CEACAM1 cytoplasmic domain. Although mutation of the 432GXXXG436 motif reduced CEACAM1 oligomerization, it did not affect surface localization of the receptor or influence CEACAM1-dependent cellular invasion by the pathogenic Neisseria. The mutation did, however, have a striking effect on CEACAM1-dependent cellular aggregation, increasing both the kinetics of cell-cell association and the size of cellular aggregates formed. CEACAM1 association with tyrosine kinase c-Src and tyrosine phosphatases SHP-1 and SHP-2 was not affected by the 432GXXXG436 mutation, consistent with their association with the monomeric form of wild type CEACAM1. Collectively, our results establish that a dynamic oligomer-to-monomer shift in surface-expressed CEACAM1 facilitates trans-homophilic binding and downstream effector signaling. PMID:24005674

  17. 34 CFR 300.115 - Continuum of alternative placements.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 34 Education 2 2014-07-01 2013-07-01 true Continuum of alternative placements. 300.115 Section 300.115 Education Regulations of the Offices of the Department of Education (Continued) OFFICE OF SPECIAL EDUCATION AND REHABILITATIVE SERVICES, DEPARTMENT OF EDUCATION ASSISTANCE TO STATES FOR THE EDUCATION...

  18. 34 CFR 300.115 - Continuum of alternative placements.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... EDUCATION OF CHILDREN WITH DISABILITIES State Eligibility Least Restrictive Environment (lre) § 300.115... 34 Education 2 2012-07-01 2012-07-01 false Continuum of alternative placements. 300.115 Section 300.115 Education Regulations of the Offices of the Department of Education (Continued) OFFICE...

  19. 34 CFR 300.115 - Continuum of alternative placements.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 34 Education 2 2011-07-01 2010-07-01 true Continuum of alternative placements. 300.115 Section 300.115 Education Regulations of the Offices of the Department of Education (Continued) OFFICE OF SPECIAL EDUCATION AND REHABILITATIVE SERVICES, DEPARTMENT OF EDUCATION ASSISTANCE TO STATES FOR THE EDUCATION...

  20. 34 CFR 300.115 - Continuum of alternative placements.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... EDUCATION OF CHILDREN WITH DISABILITIES State Eligibility Least Restrictive Environment (lre) § 300.115... 34 Education 2 2013-07-01 2013-07-01 false Continuum of alternative placements. 300.115 Section 300.115 Education Regulations of the Offices of the Department of Education (Continued) OFFICE...

  1. 34 CFR 300.115 - Continuum of alternative placements.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... EDUCATION OF CHILDREN WITH DISABILITIES State Eligibility Least Restrictive Environment (lre) § 300.115... placements is available to meet the needs of children with disabilities for special education and related... 34 Education 2 2010-07-01 2010-07-01 false Continuum of alternative placements. 300.115...

  2. Analogies between continuum dislocation theory, continuum mechanics and fluid mechanics

    NASA Astrophysics Data System (ADS)

    Silbermann, C. B.; Ihlemann, J.

    2017-03-01

    Continuum Dislocation Theory (CDT) relates gradients of plastic deformation in crystals with the presence of geometrically necessary dislocations. Interestingly, CDT shows striking analogies to other branches of continuum mechanics. The present contribution demonstrates this on two essential kinematical quantities which reflect tensorial dislocation properties: the (resultant) Burgers vector and the dislocation density tensor. First, the limiting process for the (resultant) Burgers vector from an integral to a local quantity is performed analogously to the limiting process from the force vector to the traction vector. By evaluating the balance of forces on a tetrahedral volume element, Cauchy found his famous formula relating traction vector and stress tensor. It is shown how this procedure may be adopted to a continuously dislocated tetrahedron. Here, the conservation of Burger’s vector implicates the introduction of the dislocation density tensor. Second, analogies between the plastic flow of a continuously dislocated solid and the liquid flow of a fluid are highlighted: the resultant Burgers vector of a dislocation ensemble plays a similar role as the (resultant) circulation of a vortex tube. Moreover, both vortices within flowing fluids and dislocations within deforming solids induce discontinuities in the velocity field and the plastic distortion field, respectively. Beyond the analogies, some peculiar properties of the dislocation density tensor are presented as well.

  3. Disease management: a continuum approach.

    PubMed

    Harvey, N; DePue, D M

    1997-06-01

    Disease management is a comprehensive, integrated approach to managing the health of populations through the use of disease-specific standards and protocols and population segmentation. It has been increasing in popularity among integrated delivery systems (IDSs) and payers alike as a way to respond to competitive pressures and to shift care delivery from inpatient to alternative care sites. To successfully implement disease-management programs, IDSs must develop an organizational mind-set that stresses information-driven, evidence-based standards of care that are adhered to across a tightly integrated continuum of care.

  4. Divergent cellular responses during asymptomatic subclinical and clinical states of disease in cows naturally infected with Mycobacterium avium subsp. paratuberculosis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Infection of the host with Mycobacterium avium subsp. paratuberculosis (MAP) results in a chronic and progressive enteritis that traverses both subclinical and clinical stages. The mechanism(s) for the shift from asymptomatic subclinical disease state to advanced clinical disease are not fully under...

  5. Nonlocal models in continuum mechanics

    SciTech Connect

    Johnson, N.L.; Phan-Thien, N.

    1993-09-01

    The recent appearance of nonlocal methods is examined in the light of traditional continuum mechanics. A comparison of nonlocal approaches in the fields of solid and fluid mechanics reveals that no consistent definition of a nonlocal theory has been used. We suggest a definition based on the violation of the principle of local action in continuum mechanics. From the consideration of the implications of a nonlocal theory based on this definition, we conclude that constitutive relations with nonlocal terms can confuse the traditional separation of the roles between conservation laws and constitutive relations. The diversity of motivations for the nonlocal approaches are presented, resulting primarily from deficiencies in numerical solutions to practical problems. To illustrate these concepts, the history of nonlocal terms in the field of viscoelastic fluids is reviewed. A specific example of a viscoelastic constitutive relation that contains a stress diffusion term is applied to a simple shear flow and found not to be a physical description of any known fluid. We conclude by listing questions that should be asked of nonlocal approaches.

  6. Hybrid discrete/continuum algorithms for stochastic reaction networks

    DOE PAGES

    Safta, Cosmin; Sargsyan, Khachik; Debusschere, Bert; ...

    2014-10-22

    Direct solutions of the Chemical Master Equation (CME) governing Stochastic Reaction Networks (SRNs) are generally prohibitively expensive due to excessive numbers of possible discrete states in such systems. To enhance computational efficiency we develop a hybrid approach where the evolution of states with low molecule counts is treated with the discrete CME model while that of states with large molecule counts is modeled by the continuum Fokker-Planck equation. The Fokker-Planck equation is discretized using a 2nd order finite volume approach with appropriate treatment of flux components to avoid negative probability values. The numerical construction at the interface between the discretemore » and continuum regions implements the transfer of probability reaction by reaction according to the stoichiometry of the system. As a result, the performance of this novel hybrid approach is explored for a two-species circadian model with computational efficiency gains of about one order of magnitude.« less

  7. Hybrid discrete/continuum algorithms for stochastic reaction networks

    SciTech Connect

    Safta, Cosmin Sargsyan, Khachik Debusschere, Bert Najm, Habib N.

    2015-01-15

    Direct solutions of the Chemical Master Equation (CME) governing Stochastic Reaction Networks (SRNs) are generally prohibitively expensive due to excessive numbers of possible discrete states in such systems. To enhance computational efficiency we develop a hybrid approach where the evolution of states with low molecule counts is treated with the discrete CME model while that of states with large molecule counts is modeled by the continuum Fokker–Planck equation. The Fokker–Planck equation is discretized using a 2nd order finite volume approach with appropriate treatment of flux components. The numerical construction at the interface between the discrete and continuum regions implements the transfer of probability reaction by reaction according to the stoichiometry of the system. The performance of this novel hybrid approach is explored for a two-species circadian model with computational efficiency gains of about one order of magnitude.

  8. Hybrid discrete/continuum algorithms for stochastic reaction networks

    SciTech Connect

    Safta, Cosmin; Sargsyan, Khachik; Debusschere, Bert; Najm, Habib N.

    2014-10-22

    Direct solutions of the Chemical Master Equation (CME) governing Stochastic Reaction Networks (SRNs) are generally prohibitively expensive due to excessive numbers of possible discrete states in such systems. To enhance computational efficiency we develop a hybrid approach where the evolution of states with low molecule counts is treated with the discrete CME model while that of states with large molecule counts is modeled by the continuum Fokker-Planck equation. The Fokker-Planck equation is discretized using a 2nd order finite volume approach with appropriate treatment of flux components to avoid negative probability values. The numerical construction at the interface between the discrete and continuum regions implements the transfer of probability reaction by reaction according to the stoichiometry of the system. As a result, the performance of this novel hybrid approach is explored for a two-species circadian model with computational efficiency gains of about one order of magnitude.

  9. Cellular aging and cancer

    PubMed Central

    Hornsby, Peter J.

    2010-01-01

    Aging is manifest in a variety of changes over time, including changes at the cellular level. Cellular aging acts primarily as a tumor suppressor mechanism, but also may enhance cancer development under certain circumstances. One important process of cellular aging is oncogene-induced senescence, which acts as an important anti-cancer mechanism. Cellular senescence resulting from damage caused by activated oncogenes prevents the growth or potentially neoplastic cells. Moreover, cells that have entered senescence appear to be targets for elimination by the innnate immune system. In another aspect of cellular aging, the absence of telomerase activity in normal tissues results in such cells lacking a telomere maintenance mechanism. One consequence is that in aging there is an increase in cells with shortened telomeres. In the presence of active oncogenes that cause expansion of a neoplastic clone, shortening of telomeres leading to telomere dysfunction prevents the indefinite expansion of the clone because the cells enter crisis. Crisis results from fusions and other defects caused by dysfunctional telomeres and is a terminal state of the neoplastic clone. In this way the absence of telomerase in human cells, while one cause of cellular aging, also acts as an anti-cancer mechanism. PMID:20705476

  10. Conductivity of continuum percolating systems

    NASA Astrophysics Data System (ADS)

    Stenull, Olaf; Janssen, Hans-Karl

    2001-11-01

    We study the conductivity of a class of disordered continuum systems represented by the Swiss-cheese model, where the conducting medium is the space between randomly placed spherical holes, near the percolation threshold. This model can be mapped onto a bond percolation model where the conductance σ of randomly occupied bonds is drawn from a probability distribution of the form σ-a. Employing the methods of renormalized field theory we show to arbitrary order in ɛ expansion that the critical conductivity exponent of the Swiss-cheese model is given by tSC(a)=(d-2)ν+max[φ,(1-a)-1], where d is the spatial dimension and ν and φ denote the critical exponents for the percolation correlation length and resistance, respectively. Our result confirms a conjecture that is based on the ``nodes, links, and blobs'' picture of percolation clusters.

  11. Dementia: Continuum or Distinct Entity?

    PubMed Central

    Walters, Glenn D.

    2009-01-01

    The latent structure of dementia was examined in a group of 10,775 older adults with indicators derived from a neuropsychological test battery. Subjecting these data to taxometric analysis using mean above minus below a cut (MAMBAC), maximum covariance (MAXCOV), and latent mode factor analysis (L-Mode) produced results more consistent with dementia as a dimensional (lying along a continuum) than categorical (representing a distinct entity) construct. A second study conducted on a group of 2375 21-to-64-year olds produced similar results. These findings denote that dementia, as measured by deficits in episodic memory, attention/concentration, executive function, and language, differs quantitatively rather than qualitatively from the cognitive status of non-demented adults. The implications of these results for classification, assessment, etiology, and prevention are discussed. PMID:20677881

  12. Continuum Fitting HST QSO Spectra

    NASA Technical Reports Server (NTRS)

    Tytler, David; Oliversen, Ronald J. (Technical Monitor)

    2002-01-01

    The Principal Component Analysis (PCA) method which we are using to fit and describe QSO spectra relies upon the fact that QSO continuum are generally very smooth and simple except for emission and absorption lines. To see this we need high signal-to-noise (S/N) spectra of QSOs at low redshift which have relatively few absorption lines in the Lyman-a forest. We need a large number of such spectra to use as the basis set for the PCA analysis which will find the set of principal component spectra which describe the QSO family as a whole. We have found that too few HST spectra have the required S/N and hence we need to supplement them with ground based spectra of QSOs at higher redshift. We have many such spectra and we have been working to make them suitable for this analysis. We have concentrated on this topic since 12/15/01.

  13. The New Cellular Immunology

    ERIC Educational Resources Information Center

    Claman, Henry N.

    1973-01-01

    Discusses the nature of the immune response and traces many of the discoveries that have led to the present state of knowledge in immunology. The new cellular immunology is directing its efforts toward improving health by proper manipulation of the immune mechanisms of the body. (JR)

  14. A tessellated continuum approach to thermal analysis: discontinuity networks

    NASA Astrophysics Data System (ADS)

    Jiang, C.; Davey, K.; Prosser, R.

    2017-01-01

    Tessellated continuum mechanics is an approach for the representation of thermo-mechanical behaviour of porous media on tessellated continua. It involves the application of iteration function schemes using affine contraction and expansion maps, respectively, for the creation of porous fractal materials and associated tessellated continua. Highly complex geometries can be produced using a modest number of contraction mappings. The associated tessellations form the mesh in a numerical procedure. This paper tests the hypothesis that thermal analysis of porous structures can be achieved using a discontinuous Galerkin finite element method on a tessellation. Discontinuous behaviour is identified at a discontinuity network in a tessellation; its use is shown to provide a good representation of the physics relating to cellular heat exchanger designs. Results for different cellular designs (with corresponding tessellations) are contrasted against those obtained from direct analysis and very high accuracy is observed.

  15. Epimedium koreanum Nakai Displays Broad Spectrum of Antiviral Activity in Vitro and in Vivo by Inducing Cellular Antiviral State

    PubMed Central

    Cho, Won-Kyung; Weeratunga, Prasanna; Lee, Byeong-Hoon; Park, Jun-Seol; Kim, Chul-Joong; Ma, Jin Yeul; Lee, Jong-Soo

    2015-01-01

    Epimedium koreanum Nakai has been extensively used in traditional Korean and Chinese medicine to treat a variety of diseases. Despite the plant’s known immune modulatory potential and chemical make-up, scientific information on its antiviral properties and mode of action have not been completely investigated. In this study, the broad antiviral spectrum and mode of action of an aqueous extract from Epimedium koreanum Nakai was evaluated in vitro, and moreover, the protective effect against divergent influenza A subtypes was determined in BALB/c mice. An effective dose of Epimedium koreanum Nakaimarkedly reduced the replication of Influenza A Virus (PR8), Vesicular Stomatitis Virus (VSV), Herpes Simplex Virus (HSV) and Newcastle Disease Virus (NDV) in RAW264.7 and HEK293T cells. Mechanically, we found that an aqueous extract from Epimedium koreanum Nakai induced the secretion of type I IFN and pro-inflammatory cytokines and the subsequent stimulation of the antiviral state in cells. Among various components present in the extract, quercetin was confirmed to have striking antiviral properties. The oral administration of Epimedium koreanum Nakai exhibited preventive effects on BALB/c mice against lethal doses of highly pathogenic influenza A subtypes (H1N1, H5N2, H7N3 and H9N2). Therefore, an extract of Epimedium koreanum Nakai and its components play roles as immunomodulators in the innate immune response, and may be potential candidates for prophylactic or therapeutic treatments against diverse viruses in animal and humans. PMID:25609307

  16. Continuum channel coupling of shape resonances in N2

    NASA Astrophysics Data System (ADS)

    Poliakoff, E. D.; Kakar, Sandeep; Rosenberg, R. A.

    1992-02-01

    We have measured vibrational branching ratios for 2σ-1u photoionization of N2 in an effort to elucidate fundamental aspects of continuum channel coupling. Calculations have shown that photoejection of a 2σu electron from N2 should be influenced by a shape resonance in the 3σg →ɛσu photoionization channel and that this continuum channel coupling can result in deviations from Franck-Condon behavior for the resulting N+2(B 2Σ+u) ion. In the present study, the N2 molecules are ionized by monochromatic synchrotron radiation (25state. The observed branching ratios are enhanced at hν≊30 eV and we attribute this Franck-Condon breakdown to continuum coupling between the 2σ-1u and 3σ-1g ionization channels. However, our results exhibit significant discrepancies with theory. The areas of agreement and disagreement suggest useful avenues of further study to clarify the nature of continuum channel coupling in molecular photoionization.

  17. Turbulent fluid motion 3: Basic continuum equations

    NASA Technical Reports Server (NTRS)

    Deissler, Robert G.

    1991-01-01

    A derivation of the continuum equations used for the analysis of turbulence is given. These equations include the continuity equation, the Navier-Stokes equations, and the heat transfer or energy equation. An experimental justification for using a continuum approach for the study of turbulence is given.

  18. Novel Continuum Modeling of Crystal Surface Evolution

    NASA Astrophysics Data System (ADS)

    Kandel, Daniel

    2003-03-01

    Below the roughening temperature the evolution of crystal surfaces proceeds by the nucleation, flow and annihilation of discrete atomic steps. The appropriate mathematical model of the evolution of such surfaces is discrete in nature, and consists of coupled equations for the motion, nucelation and annihilation of steps. It is useful, however, to describe surface evolution in terms of continuum models. Such models are more amenable to analytical treatments and have enormous computational advantages over their discrete counterparts. Standard continuum models successfully describe the evolution of surfaces with smooth morphology, but completely fail when the surface has singularities such as facets. It is an interesting and important challenge to develop continuum descriptions of surfaces with singularities, since in many cases the singularities drive the evolution of the whole system. In the talk I will present a conceptually new approach to continuum modeling of surface evolution, termed Configurational Continuum [1], which is valid even in singular regions. The approach consists of a new definition of the continuum limit. It is equivalent to standard continuum for very smooth morphology, but is radically different from it in singular regions, where it becomes equivalent to the discrete models. The validity of configurational continuum will be demonstrated on several simple systems. [1] N. Israeli and D. Kandel, Phys. Rev. Lett. 88, 116103 (2002).

  19. On the derivation of approximations to cellular automata models and the assumption of independence.

    PubMed

    Davies, K J; Green, J E F; Bean, N G; Binder, B J; Ross, J V

    2014-07-01

    Cellular automata are discrete agent-based models, generally used in cell-based applications. There is much interest in obtaining continuum models that describe the mean behaviour of the agents in these models. Previously, continuum models have been derived for agents undergoing motility and proliferation processes, however, these models only hold under restricted conditions. In order to narrow down the reason for these restrictions, we explore three possible sources of error in deriving the model. These sources are the choice of limiting arguments, the use of a discrete-time model as opposed to a continuous-time model and the assumption of independence between the state of sites. We present a rigorous analysis in order to gain a greater understanding of the significance of these three issues. By finding a limiting regime that accurately approximates the conservation equation for the cellular automata, we are able to conclude that the inaccuracy between our approximation and the cellular automata is completely based on the assumption of independence.

  20. Irregular Cellular Learning Automata.

    PubMed

    Esnaashari, Mehdi; Meybodi, Mohammad Reza

    2015-08-01

    Cellular learning automaton (CLA) is a recently introduced model that combines cellular automaton (CA) and learning automaton (LA). The basic idea of CLA is to use LA to adjust the state transition probability of stochastic CA. This model has been used to solve problems in areas such as channel assignment in cellular networks, call admission control, image processing, and very large scale integration placement. In this paper, an extension of CLA called irregular CLA (ICLA) is introduced. This extension is obtained by removing the structure regularity assumption in CLA. Irregularity in the structure of ICLA is needed in some applications, such as computer networks, web mining, and grid computing. The concept of expediency has been introduced for ICLA and then, conditions under which an ICLA becomes expedient are analytically found.

  1. An hypothesis on the role of cellular colloid osmotic pressure in determining behavior of cells in vitro including anchorage dependency and maintenance of the differentiated state.

    PubMed

    Rappaport, C

    1984-12-21

    The osmotic problems involved when cells are isolated from tissues are analyzed. Evidence is considered which indicates that in vivo the Na pump is operating at maximal or near maximal rates and that this depends on low leak rates for salts and water due to various aspects of the tissues structure. Dispersion of the tissue results in breakdown of these barriers on free diffusion and the isolated cell is subjected to an enormous increase in passive influx due to colloid osmotic pressure without being able to increase its pumping rate to the extent needed to maintain volume control. It is proposed that the primary problem the cell faces in vitro is to compensate for the effective increase in its colloid pressure, e.g. the colloid osmotic pressure excess, emerging with the breakdown of the tissue structure. The finding that most normal cells have to adhere to a surface in order to grow or "anchorage dependency" is analyzed in terms of the way adhesion and spreading result in changes in ion and water movements into cells enabling them to achieve fluid balance in the face of the colloid pressure excess. It is also proposed that the differentiated state is more dependent on colloid osmotic balance than proliferation. The failure of conditions used in tissue culture to compensate adequately for the colloid pressure excess results in limiting the amount of protein which can be synthesized, dissipation of cellular energy, and changes in orientation of cellular components which contribute directly to the loss of differentiation which occurs during growth in vitro.

  2. Glucagon mediated Ca/sup 2 +/-mobilization in the isolated perfused rat liver is dependent on cellular oxidation-reduction state

    SciTech Connect

    Rashed, H.M.; Patel, T.B.

    1987-05-01

    Alterations in the efflux of /sup 45/Ca/sup 2 +/ from non-recirculating isolated perfused rat livers during glucagon (G) or phenylephrine (Ph) infusion was employed as a monitor of Ca/sup 2 +/-mobilization in the intact organ. The effect of altering cellular redox state with infusion of either pyruvate (P) alone, or lactate (L) alone, or a mixture of P and L on Ca/sup 2 +/-mobilization by G was investigated. As a control in all experiments, the ability of Ph (1 x 10/sup -5/M) to alter /sup 45/Ca/sup 2 +/ efflux was also monitored. Under all experimental conditions Ph infusion in liver resulted in a stimulation of /sup 45/Ca/sup 2 +/ efflux. In livers of 24h-fasted rats perfused in the absence of any substrate, or in the presence of P alone, or L alone, infusion of 1 x 10/sup -8/M G resulted in a small increase in the rate of /sup 45/Ca/sup 2 +/ efflux while 1 x 10/sup -9/M G was ineffective. However, when livers derived from 24h-fasted rats were perfused with a mixture of L and P such that the concentration of L + P was fixed at 2.0 mM and the ratio of L/P was either 4 or 8, infusion of 1 x 10/sup -9/M G resulted in a substantial increase in the rate of /sup 45/Ca/sup 2 +/ efflux. These data indicate that cellular redox potential may facilitate or potentiate the ability of G to mobilize Ca/sup 2 +/ in the isolated perfused liver.

  3. Quantum features of natural cellular automata

    NASA Astrophysics Data System (ADS)

    Elze, Hans-Thomas

    2016-03-01

    Cellular automata can show well known features of quantum mechanics, such as a linear rule according to which they evolve and which resembles a discretized version of the Schrödinger equation. This includes corresponding conservation laws. The class of “natural” Hamiltonian cellular automata is based exclusively on integer-valued variables and couplings and their dynamics derives from an Action Principle. They can be mapped reversibly to continuum models by applying Sampling Theory. Thus, “deformed” quantum mechanical models with a finite discreteness scale l are obtained, which for l → 0 reproduce familiar continuum results. We have recently demonstrated that such automata can form “multipartite” systems consistently with the tensor product structures of nonrelativistic many-body quantum mechanics, while interacting and maintaining the linear evolution. Consequently, the Superposition Principle fully applies for such primitive discrete deterministic automata and their composites and can produce the essential quantum effects of interference and entanglement.

  4. Lattice continuum and diffusional creep

    NASA Astrophysics Data System (ADS)

    Mesarovic, Sinisa Dj.

    2016-04-01

    Diffusional creep is characterized by growth/disappearance of lattice planes at the crystal boundaries that serve as sources/sinks of vacancies, and by diffusion of vacancies. The lattice continuum theory developed here represents a natural and intuitive framework for the analysis of diffusion in crystals and lattice growth/loss at the boundaries. The formulation includes the definition of the Lagrangian reference configuration for the newly created lattice, the transport theorem and the definition of the creep rate tensor for a polycrystal as a piecewise uniform, discontinuous field. The values associated with each crystalline grain are related to the normal diffusional flux at grain boundaries. The governing equations for Nabarro-Herring creep are derived with coupled diffusion and elasticity with compositional eigenstrain. Both, bulk diffusional dissipation and boundary dissipation accompanying vacancy nucleation and absorption, are considered, but the latter is found to be negligible. For periodic arrangements of grains, diffusion formally decouples from elasticity but at the cost of a complicated boundary condition. The equilibrium of deviatorically stressed polycrystals is impossible without inclusion of interface energies. The secondary creep rate estimates correspond to the standard Nabarro-Herring model, and the volumetric creep is small. The initial (primary) creep rate is estimated to be much larger than the secondary creep rate.

  5. Lattice continuum and diffusional creep

    PubMed Central

    2016-01-01

    Diffusional creep is characterized by growth/disappearance of lattice planes at the crystal boundaries that serve as sources/sinks of vacancies, and by diffusion of vacancies. The lattice continuum theory developed here represents a natural and intuitive framework for the analysis of diffusion in crystals and lattice growth/loss at the boundaries. The formulation includes the definition of the Lagrangian reference configuration for the newly created lattice, the transport theorem and the definition of the creep rate tensor for a polycrystal as a piecewise uniform, discontinuous field. The values associated with each crystalline grain are related to the normal diffusional flux at grain boundaries. The governing equations for Nabarro–Herring creep are derived with coupled diffusion and elasticity with compositional eigenstrain. Both, bulk diffusional dissipation and boundary dissipation accompanying vacancy nucleation and absorption, are considered, but the latter is found to be negligible. For periodic arrangements of grains, diffusion formally decouples from elasticity but at the cost of a complicated boundary condition. The equilibrium of deviatorically stressed polycrystals is impossible without inclusion of interface energies. The secondary creep rate estimates correspond to the standard Nabarro–Herring model, and the volumetric creep is small. The initial (primary) creep rate is estimated to be much larger than the secondary creep rate. PMID:27274696

  6. Analysis of an optimization-based atomistic-to-continuum coupling method for point defects

    DOE PAGES

    Olson, Derek; Shapeev, Alexander V.; Bochev, Pavel B.; ...

    2015-11-16

    Here, we formulate and analyze an optimization-based Atomistic-to-Continuum (AtC) coupling method for problems with point defects. Application of a potential-based atomistic model near the defect core enables accurate simulation of the defect. Away from the core, where site energies become nearly independent of the lattice position, the method switches to a more efficient continuum model. The two models are merged by minimizing the mismatch of their states on an overlap region, subject to the atomistic and continuum force balance equations acting independently in their domains. We prove that the optimization problem is well-posed and establish error estimates.

  7. Continuum methods in lattice perturbation theory

    SciTech Connect

    Becher, Thomas G

    2002-11-15

    We show how methods of continuum perturbation theory can be used to simplify perturbative lattice calculations. We use the technique of asymptotic expansions to expand lattice loop integrals around the continuum limit. After the expansion, all nontrivial dependence on momenta and masses is encoded in continuum loop integrals and the only genuine lattice integrals left are tadpole integrals. Using integration-by-parts relations all of these can be expressed in terms of a small number of master integrals. Four master integrals are needed for bosonic one loop integrals, sixteen in QCD with Wilson or staggered fermions.

  8. Periodic amplitude variations in Jovian continuum radiation

    NASA Technical Reports Server (NTRS)

    Kurth, W. S.; Gurnett, D. A.; Scarf, F. L.

    1986-01-01

    An analysis of periodic variations in the amplitude of continuum radiation near 3 kHz trapped in the Jovian magnetosphere shows structure with periods near both five and ten hours. Contrary to a plausible initial idea, the continuum amplitudes are not organized by position of the observer relative to the dense plasma sheet. Instead, there seem to be preferred orientations of system III longitude with respect to the direction to the sun which account for the peaks. This implies a clock-like modulation of the continuum radiation intensity as opposed to a searchlight effect. The importance of the dipole longitude-solar wind alignment to the amplitude of the continuum radiation implies the source region of the radiation is near the magnetopause and may indirectly tie the generation of the radio waves to the clocklike modulation of energetic electron fluxes from Jupiter.

  9. A continuum model of nanocrystalline metals under shock loading

    NASA Astrophysics Data System (ADS)

    Jérusalem, Antoine; Radovitzky, Raúl

    2009-03-01

    Recent atomistic simulations have shown that grain boundary sliding in nanocrystals is altered under shock loading conditions. It is found that the high state of compression inhibits grain boundary sliding and reactivates intragrain dislocation activity. This leads to higher material strength and postpones the transition between these two deformation mechanisms to smaller grain size. We present here a continuum model aimed at extending the model proposed by Jérusalem et al for quasi-static and high rates (2007 Phil. Mag. 87 2541-59) to shock loading. To this end, the shock response of nanocrystals is investigated by accounting specifically for additional frictional deformation-inhibiting effects. The model is based on a numerical finite element discretization of the polycrystal, considered as a continuum, with embedded surfaces of discontinuity accounting for the grain boundary response. Interface elements are formulated to account for the special kinematics of grain boundaries, i.e. to describe grain boundary frictional sliding and other accommodation mechanisms. The response of grain interiors is modeled with a high rate equation of state for the volumetric response and a simple plasticity model to describe their deviatoric response. A large-scale parallel computing framework is finally developed to calibrate and investigate the specificities of the deformation mechanisms under shock loading conditions, and the results are compared in detail with atomistic results. As a conclusion, this extended three-dimensional continuum model constitutes a promising first step for the characterization of large-scale nanocrystalline deformation under the most complete range of loading rates yet proposed in continuum simulations, namely, from quasi-static to shock loading.

  10. Noise scaling in continuum percolating films

    NASA Astrophysics Data System (ADS)

    Garfunkel, G. A.; Weissman, M. B.

    1985-07-01

    Measurements of the scaling of 1/f noise magnitude versus resistance were made in metal films as the metal was removed by sandblasting. This procedure gives an approximate experimental realization of a Swiss-cheese continuum-percolation model, for which theory indicates some scaling properties very different from lattice percolation. The ratio of the resistance and noise exponents was in strong disagreement with lattice-percolation predictions and agreed approximately with simple continuum predictions.

  11. Geometric continuum regularization of quantum field theory

    SciTech Connect

    Halpern, M.B. . Dept. of Physics)

    1989-11-08

    An overview of the continuum regularization program is given. The program is traced from its roots in stochastic quantization, with emphasis on the examples of regularized gauge theory, the regularized general nonlinear sigma model and regularized quantum gravity. In its coordinate-invariant form, the regularization is seen as entirely geometric: only the supermetric on field deformations is regularized, and the prescription provides universal nonperturbative invariant continuum regularization across all quantum field theory. 54 refs.

  12. Experimental micro mechanics methods for conventional and negative Poisson's ratio cellular solids as Cosserat continua

    NASA Technical Reports Server (NTRS)

    Lakes, R.

    1991-01-01

    Continuum representations of micromechanical phenomena in structured materials are described, with emphasis on cellular solids. These phenomena are interpreted in light of Cosserat elasticity, a generalized continuum theory which admits degrees of freedom not present in classical elasticity. These are the rotation of points in the material, and a couple per unit area or couple stress. Experimental work in this area is reviewed, and other interpretation schemes are discussed. The applicability of Cosserat elasticity to cellular solids and fibrous composite materials is considered as is the application of related generalized continuum theories. New experimental results are presented for foam materials with negative Poisson's ratios.

  13. Typology of nonlinear activity waves in a layered neural continuum.

    PubMed

    Koch, Paul; Leisman, Gerry

    2006-04-01

    Neural tissue, a medium containing electro-chemical energy, can amplify small increments in cellular activity. The growing disturbance, measured as the fraction of active cells, manifests as propagating waves. In a layered geometry with a time delay in synaptic signals between the layers, the delay is instrumental in determining the amplified wavelengths. The growth of the waves is limited by the finite number of neural cells in a given region of the continuum. As wave growth saturates, the resulting activity patterns in space and time show a variety of forms, ranging from regular monochromatic waves to highly irregular mixtures of different spatial frequencies. The type of wave configuration is determined by a number of parameters, including alertness and synaptic conditioning as well as delay. For all cases studied, using numerical solution of the nonlinear Wilson-Cowan (1973) equations, there is an interval in delay in which the wave mixing occurs. As delay increases through this interval, during a series of consecutive waves propagating through a continuum region, the activity within that region changes from a single-frequency to a multiple-frequency pattern and back again. The diverse spatio-temporal patterns give a more concrete form to several metaphors advanced over the years to attempt an explanation of cognitive phenomena: Activity waves embody the "holographic memory" (Pribram, 1991); wave mixing provides a plausible cause of the competition called "neural Darwinism" (Edelman, 1988); finally the consecutive generation of growing neural waves can explain the discontinuousness of "psychological time" (Stroud, 1955).

  14. Cancer communication and informatics research across the cancer continuum.

    PubMed

    Hesse, Bradford W; Beckjord, Ellen; Rutten, Lila J Finney; Fagerlin, Angela; Cameron, Linda D

    2015-01-01

    Over the past decade, dramatic changes brought about by a rapid diffusion of Internet technologies, cellular telephones, mobile devices, personal digital assistants, electronic health records, and data visualization have helped to create a revolution in health communication. To understand the implications of this communication revolution for cancer care, the National Cancer Institute launched an ambitious set of research priorities under its "extraordinary opportunities" program. We present an overview of some of the relevant behavioral research being conducted within the perspective of this extraordinary opportunity in cancer communication research. We begin by tracing the implications of this research for behavioral scientists across the continuum of cancer care from primary prevention (e.g., tobacco control, diet, exercise, sun protection, and immunization against human papilloma virus), to secondary prevention (e.g., screening for polyps, lesions, and early stage neoplasms), to diagnosis and treatment, posttreatment survivorship, and end of life. Along each point of the continuum, we describe a natural evolution of knowledge from studies on the traditional role of media to research on the changing role of new media and informatics, and we carefully highlight the role that psychological research has played in improving communication- and health-related outcomes along the way. We conclude with an appeal to psychologists of many different backgrounds to join with biomedical researchers, engineers, clinical practitioners, and others to accelerate progress against cancer.

  15. Ensuring congruency in multiscale modeling: towards linking agent based and continuum biomechanical models of arterial adaptation.

    PubMed

    Hayenga, Heather N; Thorne, Bryan C; Peirce, Shayn M; Humphrey, Jay D

    2011-11-01

    There is a need to develop multiscale models of vascular adaptations to understand tissue-level manifestations of cellular level mechanisms. Continuum-based biomechanical models are well suited for relating blood pressures and flows to stress-mediated changes in geometry and properties, but less so for describing underlying mechanobiological processes. Discrete stochastic agent-based models are well suited for representing biological processes at a cellular level, but not for describing tissue-level mechanical changes. We present here a conceptually new approach to facilitate the coupling of continuum and agent-based models. Because of ubiquitous limitations in both the tissue- and cell-level data from which one derives constitutive relations for continuum models and rule-sets for agent-based models, we suggest that model verification should enforce congruency across scales. That is, multiscale model parameters initially determined from data sets representing different scales should be refined, when possible, to ensure that common outputs are consistent. Potential advantages of this approach are illustrated by comparing simulated aortic responses to a sustained increase in blood pressure predicted by continuum and agent-based models both before and after instituting a genetic algorithm to refine 16 objectively bounded model parameters. We show that congruency-based parameter refinement not only yielded increased consistency across scales, it also yielded predictions that are closer to in vivo observations.

  16. Sacrifice Along the Energy Continuum: A Call for Energy Justice

    PubMed Central

    Hernández, Diana

    2016-01-01

    The confluence of energy supply- and demand-side dynamics links vulnerable communities along the spectrum of energy production and consumption. The disproportionate burden borne by vulnerable communities along the energy continuum are seldom examined simultaneously. Yet, from a justice perspective there are important parallels that merit further exploration in the United States and beyond. A first step is to understand links to vulnerability and justice along the energy continuum by way of theoretical constructs and practical applications. The present article posits energy as a social and environmental justice issue and advances our current understanding of the links between energy and vulnerability, particularly in the U.S. context. Drawing on several emerging concepts including, “energy sacrifice zones,” “energy insecurity” and “energy justice,” this article lays a foundation for examining critical sacrifices along the energy continuum. To conclude, four basic rights are proposed as a starting point to achieve recognition and equity for vulnerable populations in the realm of energy. PMID:27053980

  17. Control of density fluctuations in atomistic-continuum simulations of dense liquids

    NASA Astrophysics Data System (ADS)

    Kotsalis, E. M.; Walther, J. H.; Koumoutsakos, P.

    2007-07-01

    We present a control algorithm to eliminate spurious density fluctuations associated with the coupling of atomistic and continuum descriptions for dense liquids. A Schwartz domain decomposition algorithm is employed to couple molecular dynamics for the simulation of the atomistic system with a continuum solver for the simulation of the Navier-Stokes equations. The lack of periodic boundary conditions in the molecular dynamics simulations hinders the proper accounting for the virial pressure leading to spurious density fluctuations at the continuum-atomistic interface. An ad hoc boundary force is usually employed to remedy this situation. We propose the calculation of this boundary force using a control algorithm that explicitly cancels the density fluctuations. The results demonstrate that the present approach outperforms state-of-the-art algorithms. The conceptual and algorithmic simplicity of the method makes it suitable for any type of coupling between atomistic and continuum descriptions of dense fluids.

  18. Control of density fluctuations in atomistic-continuum simulations of dense liquids.

    PubMed

    Kotsalis, E M; Walther, J H; Koumoutsakos, P

    2007-07-01

    We present a control algorithm to eliminate spurious density fluctuations associated with the coupling of atomistic and continuum descriptions for dense liquids. A Schwartz domain decomposition algorithm is employed to couple molecular dynamics for the simulation of the atomistic system with a continuum solver for the simulation of the Navier-Stokes equations. The lack of periodic boundary conditions in the molecular dynamics simulations hinders the proper accounting for the virial pressure leading to spurious density fluctuations at the continuum-atomistic interface. An ad hoc boundary force is usually employed to remedy this situation. We propose the calculation of this boundary force using a control algorithm that explicitly cancels the density fluctuations. The results demonstrate that the present approach outperforms state-of-the-art algorithms. The conceptual and algorithmic simplicity of the method makes it suitable for any type of coupling between atomistic and continuum descriptions of dense fluids.

  19. Numerical Modelling and Damage Assessment of Rotary Wing Aircraft Cabin Door Using Continuum Damage Mechanics Model

    NASA Astrophysics Data System (ADS)

    Boyina, Gangadhara Rao T.; Rayavarapu, Vijaya Kumar; V. V., Subba Rao

    2017-02-01

    The prediction of ultimate strength remains the main challenge in the simulation of the mechanical response of composite structures. This paper examines continuum damage model to predict the strength and size effects for deformation and failure response of polymer composite laminates when subjected to complex state of stress. The paper also considers how the overall results of the exercise can be applied in design applications. The continuum damage model is described and the resulting prediction of size effects are compared against the standard benchmark solutions. The stress analysis for strength prediction of rotary wing aircraft cabin door is carried out. The goal of this study is to extend the proposed continuum damage model such that it can be accurately predict the failure around stress concentration regions. The finite element-based continuum damage mechanics model can be applied to the structures and components of arbitrary configurations where analytical solutions could not be developed.

  20. Non-Markovian transmission through two quantum dots connected by a continuum

    NASA Astrophysics Data System (ADS)

    Cao, Yunshan; Xu, Luting; Meng, Jianyu; Li, Xin-Qi

    2012-10-01

    We consider a transport setup that contains a double-dot connected by a continuum. Via an exact solution of the time-dependent Schrödinger equation, we demonstrate a highly non-Markovian quantum-coherence-mediated transport through this dot-continuum-dot (DCD) system, which is in contrast with the common premise since in typical case a quantum particle does not reenter the system of interest once it irreversibly decayed into a continuum (such as the spontaneous emission of a photon). We also find that this DCD system supports an unusual steady state with unequal source and drain currents, owing to electrons irreversibly entering the continuum and floating there.

  1. Mirrored continuum and molecular scale simulations of the ignition of gamma phase RDX

    NASA Astrophysics Data System (ADS)

    Stewart, D. Scott; Chaudhuri, Santanu; Joshi, Kaushik; Lee, Kibaek

    2017-01-01

    We describe the ignition of an explosive crystal of gamma-phase RDX due to a thermal hot spot with reactive molecular dynamics (RMD), with first-principles trained, reactive force field based molecular potentials that represents an extremely complex reaction network. The RMD simulation is analyzed by sorting molecular product fragments into high and low molecular weight groups, to represent identifiable components that can be interpreted by a continuum model. A continuum model based on a Gibbs formulation has a single temperature and stress state for the mixture. The continuum simulation that mirrors the atomistic simulation allows us to study the atomistic simulation in the familiar physical chemistry framework and provides an essential, continuum/atomistic link.

  2. Observations of Continuum Depression in Warm Dense Matter with X-Ray Thomson Scattering

    NASA Astrophysics Data System (ADS)

    Fletcher, L. B.; Kritcher, A. L.; Pak, A.; Ma, T.; Döppner, T.; Fortmann, C.; Divol, L.; Jones, O. S.; Landen, O. L.; Scott, H. A.; Vorberger, J.; Chapman, D. A.; Gericke, D. O.; Mattern, B. A.; Seidler, G. T.; Gregori, G.; Falcone, R. W.; Glenzer, S. H.

    2014-04-01

    Detailed measurements of the electron densities, temperatures, and ionization states of compressed CH shells approaching pressures of 50 Mbar are achieved with spectrally resolved x-ray scattering. Laser-produced 9 keV x-rays probe the plasma during the transient state of three-shock coalescence. High signal-to-noise x-ray scattering spectra show direct evidence of continuum depression in highly degenerate warm dense matter states with electron densities ne>1024 cm-3. The measured densities and temperatures agree well with radiation-hydrodynamic modeling when accounting for continuum lowering in calculations that employ detailed configuration accounting.

  3. Continuum Approaches for Describing Solid-Gas and Solid-Liquid Flow

    DTIC Science & Technology

    1992-02-01

    architecture, cellular automata , etc.) as they become available. These computer simulations can be used to evaluate the rheological properties and, hence, be...avalanches and sand- dune formation, in addition to its relevance for solid transport e.g., circulating fluidized beds. Simple kinetic theories of particle...Real flowing sand forms sandpiles (or sand dunes ) stabilized by sliding friction as the velocity becomes small, yet a continuum fluid model of the

  4. Continuum Absorption Coefficient of Atoms and Ions

    NASA Technical Reports Server (NTRS)

    Armaly, B. F.

    1979-01-01

    The rate of heat transfer to the heat shield of a Jupiter probe has been estimated to be one order of magnitude higher than any previously experienced in an outer space exploration program. More than one-third of this heat load is due to an emission of continuum radiation from atoms and ions. The existing computer code for calculating the continuum contribution to the total load utilizes a modified version of Biberman's approximate method. The continuum radiation absorption cross sections of a C - H - O - N ablation system were examined in detail. The present computer code was evaluated and updated by being compared with available exact and approximate calculations and correlations of experimental data. A detailed calculation procedure, which can be applied to other atomic species, is presented. The approximate correlations can be made to agree with the available exact and experimental data.

  5. Defining and testing a granular continuum element

    SciTech Connect

    Rycroft, Chris H.; Kamrin, Ken; Bazant, Martin Z.

    2007-12-03

    Continuum mechanics relies on the fundamental notion of amesoscopic volume "element" in which properties averaged over discreteparticles obey deterministic relationships. Recent work on granularmaterials suggests a continuum law may be inapplicable, revealinginhomogeneities at the particle level, such as force chains and slow cagebreaking. Here, we analyze large-scale Discrete-Element Method (DEM)simulations of different granular flows and show that a "granularelement" can indeed be defined at the scale of dynamical correlations,roughly three to five particle diameters. Its rheology is rather subtle,combining liquid-like dependence on deformation rate and solid-likedependence on strain. Our results confirm some aspects of classicalplasticity theory (e.g., coaxiality of stress and deformation rate),while contradicting others (i.e., incipient yield), and can guide thedevelopment of more realistic continuum models.

  6. Hadron resonances with a quark core embedded in the continuum

    SciTech Connect

    Shimizu, Kiyotaka; Takeuchi, Sachiko; Takizawa, Makoto

    2011-05-06

    We investigate the excited baryons and mesons which cannot be described in terms of a simple constituent quark model, such as {Lambda}(1405) and X(3872) as a resonance in a coupled channel hadron-hadron (baryon-meson or meson-meson) scattering with a 'bound state embedded in the continuum' (BSEC). For this purpose, we solve the Lippmann-Schwinger equation including a BSEC in the momentum space. This BSEC is introduced by hand, as a state not originated from a simple baryon-meson or meson-meson system. We assume it comes from the three-quark state or quark-anti quark state and show such a picture can describe the {Lambda}(1405) and X(3872) resonances.

  7. Hydrologic ramifications of an increased role of wildland fire across the rangeland-dry forest continuum

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The increased role of wildland fire across the rangeland-dry forest continuum in the western United States (US) presents landscape-scale consequences relative runoff and erosion. Much of the Intermountain West now exists in a state in which rangeland and woodland wildfires stimulated by invasive che...

  8. Decay of a nonlinear impurity in a structured continuum from a nonlinear Fano-Anderson model

    SciTech Connect

    Longhi, Stefano

    2007-05-01

    The decay dynamics of a nonlinear impurity mode embedded in a linear structured continuum is theoretically investigated in the framework of a nonlinear Fano-Anderson model. A gradient flow dynamics for the survival probability is derived in the Van Hove ({lambda}{sup 2}t) limit by a multiple-scale asymptotic analysis, and the role of nonlinearity on the decay law is discussed. In particular, it is shown that the existence of bound states embedded in the continuum acts as transient trapping states which slow down the decay. The dynamical behavior predicted in the {lambda}{sup 2}t limit is studied in detail for a simple tight-binding one-dimensional lattice model, which may describe electron or photon transport in condensed matter or photonic systems. Numerical simulations of the underlying equations confirm, in particular, the trapping effect in the decay process due to bound states embedded in the continuum.

  9. Core excitations in (d,p) reactions including transitions to continuum levels

    NASA Astrophysics Data System (ADS)

    Makoto, Tanifuji; Osamu, Mikoshiba; Tokuo, Terasawa

    1982-11-01

    Effects of core excitations in (d, p) reactions are investigated for 12C(d, p) 13C ∗ reactions in the CCBA framework, where couplings of channels are considered for the ground and first-excited levels of 12C in the initial state and for the bound {1}/{2}+and{5}/{2}+ levels and low-lying continuum levels of 13C in the final state, where a discretization is introduced for the continuum region. In the transitions to the continuum levels, matrix elements are calculated by the use of scattering-state wave functions for the final neutron. Theoretical cross sections and vector analyzing powers are compared with experimental data, where significant contributions of core-excitation processes are identified, particularly in the transition to the {5}/{2}+II level of 13C. Spectra of emitted protons are calculated and compared with the measured ones. Adequate agreement between theory and experiment is found throughout the present investigation.

  10. Multipartite cellular automata and the superposition principle

    NASA Astrophysics Data System (ADS)

    Elze, Hans-Thomas

    2016-05-01

    Cellular automata (CA) can show well known features of quantum mechanics (QM), such as a linear updating rule that resembles a discretized form of the Schrödinger equation together with its conservation laws. Surprisingly, a whole class of “natural” Hamiltonian CA, which are based entirely on integer-valued variables and couplings and derived from an action principle, can be mapped reversibly to continuum models with the help of sampling theory. This results in “deformed” quantum mechanical models with a finite discreteness scale l, which for l→0 reproduce the familiar continuum limit. Presently, we show, in particular, how such automata can form “multipartite” systems consistently with the tensor product structures of non-relativistic many-body QM, while maintaining the linearity of dynamics. Consequently, the superposition principle is fully operative already on the level of these primordial discrete deterministic automata, including the essential quantum effects of interference and entanglement.

  11. Fluctuation relation based continuum model for thermoviscoplasticity in metals

    NASA Astrophysics Data System (ADS)

    Roy Chowdhury, Shubhankar; Roy, Debasish; Reddy, J. N.; Srinivasa, Arun

    2016-11-01

    A continuum plasticity model for metals is presented from considerations of non-equilibrium thermodynamics. Of specific interest is the application of a fluctuation relation that subsumes the second law of thermodynamics en route to deriving the evolution equations for the internal state variables. The modelling itself is accomplished in a two-temperature framework that appears naturally by considering the thermodynamic system to be composed of two weakly interacting subsystems, viz. a kinetic vibrational subsystem corresponding to the atomic lattice vibrations and a configurational subsystem of the slower degrees of freedom describing the motion of defects in a plastically deforming metal. An apparently physical nature of the present model derives upon considering the dislocation density, which characterizes the configurational subsystem, as a state variable. Unlike the usual constitutive modelling aided by the second law of thermodynamics that merely provides a guideline to select the admissible (though possibly non-unique) processes, the present formalism strictly determines the process or the evolution equations for the thermodynamic states while including the effect of fluctuations. The continuum model accommodates finite deformation and describes plastic deformation in a yield-free setup. The theory here is essentially limited to face-centered cubic metals modelled with a single dislocation density as the internal variable. Limited numerical simulations are presented with validation against relevant experimental data.

  12. The HIV treatment cascade and care continuum: updates, goals, and recommendations for the future.

    PubMed

    Kay, Emma Sophia; Batey, D Scott; Mugavero, Michael J

    2016-01-01

    The HIV care continuum is a framework that models the dynamic stages of HIV care. The continuum consists of five main steps, which, at the population level, are depicted cross-sectionally as the HIV treatment cascade. These steps include diagnosis, linkage to care (LTC), retention in care (RiC), adherence to antiretroviral therapy (ART), and viral suppression. Although the HIV treatment cascade is represented as a linear, unidirectional framework, persons living with HIV (PLWH) often experience the care continuum in a less streamlined fashion, skip steps altogether, or even exit the continuum for a period of time and regress to an earlier stage. The proportion of PLWH decreases at each successive step of the cascade, beginning with an estimated 86% who are diagnosed and dropping dramatically to approximately 30% of PLWH who are virally suppressed in the United States (US). In this current issues review, we describe each step in the cascade, discuss targeted interventions that address weak points in the continuum, review domestic and international policies that help shape and direct HIV care strategies, and conclude with recommendations and future directions for HIV providers and policymakers. While we primarily examine issues related to domestic HIV care in the US, we also discuss international applications of the continuum in order to provide broader context.

  13. Efficient white-light continuum generation in transparent solid media using ˜250 fs, 1053 nm laser pulses

    NASA Astrophysics Data System (ADS)

    Imran, T.; Figueira, G.

    2010-04-01

    We report white-light continuum generation in solid-state media (fused silica and sapphire) using seed pulses centered at 1053 nm and at a repetition rate of 10 Hz. We have investigated the influence of different parameters, such as changing the focal position and the energy of the incident pulse within the medium to obtain optimal white-light continuum. Preliminary results indicate that for intense laser pulses, waist position inside the media and input energy are crucial for high efficiency white-light continuum generation over the wavelength range 400-1100 nm. It was also found that pulses centered at 1053 nm generate a flatter spectrum, with higher white-light continuum efficiency. Such a flat response over a broad bandwidth in the continuum has the potential to be efficiently compressed to shorter durations.

  14. Mentorship: The Education-Research Continuum

    SciTech Connect

    Correll, D

    2008-05-29

    recommendation for learning science stated: 'The Nature of Science includes the scientific world view, scientific methods of inquiry, and the nature of the scientific enterprise'. All three elements of the 'Nature of Science' are pivotal aspects of a research internship under the mentorship of an experienced and trusted advisor. In addition to internships for undergraduates, an important ingredient in realizing 'Science for All' is collaboration involving educators and scientists as they engage science students and the public at large to promote science literacy and to develop the next generation of STEM professionals. The DOE National Laboratories, individually and collectively, form an ideal nexus for nurturing these complementary collaborations. My 'Science for All' experiences at Lawrence Livermore National Laboratory (LLNL) over the last 30 years have spanned pre-college, college, and postdoctoral activities, including mentoring of undergraduate students. Early in my mentoring career, I became aware that undergraduates in particular needed help in answering the question 'what path (or paths) will lead to a challenging and rewarding STEM career'? For many, a successful path included a research internship that would result in expanded skills and training in addition to those received from their academic education. These internship skills were helpful whether the student's next Education-Research Continuum decision was graduate school or STEM employment. My experience at LLNL mirrors that of my colleagues at other DOE National Laboratories--internships with a dedicated mentor provide undergraduates with a unique set of skills that can underpin their future options and serve to improve the number, quality, and successful outcomes of students who enter STEM careers. 'Science for All' can also be found in the goals of 'The America COMPETES Act', which call for renewed efforts to increase investments in scientific research and development, strengthen education, and encourage

  15. A Multiscale Morphing Continuum Description for Turbulence

    NASA Astrophysics Data System (ADS)

    Chen, James; Wonnell, Louis

    2015-11-01

    Turbulence is a flow physics phenomena invlolving multiple length scales. The popular Navier- Stokes equations only possess one length/time scale. Therefore, extremely fine mesh is needed for DNS attempting to resolve the small scale motion, which comes with a burden of excessive computational cost. For practical application with complex geometries, the research society rely on RANS and LES, which requre turbulence model or subgrid scale (SGS) model for closure problems. Different models not only lead to different results but usually are invalidated on solid physical grounds, such as objectivity and entropy principle.The Morphing Continuum Theory (MCT) is a high-order continuum theory formulated under the framework of thermalmechanics for physics phenomena involving microstructure. In this study, a theoretical perspective for the multiscale nature of the Morphing Continuum Theory is connected with the multiscale nature of turbulence physics. The kinematics, balance laws, constitutive equations and a Morphing Continuum description of turbulence are introduced. The equations were numerically implemented for a zero pressure gradient flat plate. The simulations are compate with the laminar, transitional and turbulence cases.

  16. Parental Involvement to Parental Engagement: A Continuum

    ERIC Educational Resources Information Center

    Goodall, Janet; Montgomery, Caroline

    2014-01-01

    Based on the literature of the field, this article traces a continuum between parental involvement with schools, and parental engagement with children's learning. The article seeks to shed light on an area of confusion; previous research has shown that different stakeholder groups understand "parental engagement" in different ways.…

  17. Language Attitudes in a Creole Continuum.

    ERIC Educational Resources Information Center

    Rickford, John R.

    The standard view of language attitudes in a creole continuum is that the creole is considered bad and the standard language is considered good. This standard view fits with the theory of decreolization by which such continua are thought to have come about. A study was carried out in Guyana in an effort to overcome the perceived limitations of the…

  18. Radio continuum from FU Orionis stars

    SciTech Connect

    Rodriguez, L.F.; Hartmann, L.W.; Chavira, E. Harvard-Smithsonian Center for Astrophysics, Cambridge, MA Instituto Nacional de Astrofisica, Optica y Electronica, Puebla )

    1990-12-01

    Using the very large array a sensitive search is conducted for 3.6-cm continuum emission toward four FU Orionis objects: FU Ori, V1515 Cyg, V1057 Cyg, and Elias 1-12. V1057 Cyg and Elias 1-12 at the level of about 0.1 mJy is detected. The association of radio continuum emission with these FU Ori objects strengthens a possible relation between FU Ori stars and objects like L 1551 IRS 5 and Z CMa that are also sources of radio continuum emission and have been proposed as post-FU Ori objects. Whether the radio continuum emission is caused by free-free emission from ionized ejecta or if it is optically thin emission from a dusty disk is discussed. It was determined that, in the archives of the Tonantzintla Observatory, a plate taken in 1957 does not show Elias 1-12. This result significantly narrows the time range for the epoch of the outburst of this source to between 1957 and 1965. 38 refs.

  19. Continuum modeling of large lattice structures: Status and projections

    NASA Technical Reports Server (NTRS)

    Noor, Ahmed K.; Mikulas, Martin M., Jr.

    1988-01-01

    The status and some recent developments of continuum modeling for large repetitive lattice structures are summarized. Discussion focuses on a number of aspects including definition of an effective substitute continuum; characterization of the continuum model; and the different approaches for generating the properties of the continuum, namely, the constitutive matrix, the matrix of mass densities, and the matrix of thermal coefficients. Also, a simple approach is presented for generating the continuum properties. The approach can be used to generate analytic and/or numerical values of the continuum properties.

  20. Cellular automata for traffic simulations

    NASA Astrophysics Data System (ADS)

    Wolf, Dietrich E.

    1999-02-01

    Traffic phenomena such as the transition from free to congested flow, lane inversion and platoon formation can be accurately reproduced using cellular automata. Being computationally extremely efficient, they simulate large traffic systems many times faster than real time so that predictions become feasible. A riview of recent results is given. The presence of metastable states at the jamming transition is discussed in detail. A simple new cellular automation is introduced, in which the interaction between cars is Galilei-invariant. It is shown that this type of interaction accounts for metastable states in a very natural way.

  1. Origami interleaved tube cellular materials

    NASA Astrophysics Data System (ADS)

    Cheung, Kenneth C.; Tachi, Tomohiro; Calisch, Sam; Miura, Koryo

    2014-09-01

    A novel origami cellular material based on a deployable cellular origami structure is described. The structure is bi-directionally flat-foldable in two orthogonal (x and y) directions and is relatively stiff in the third orthogonal (z) direction. While such mechanical orthotropicity is well known in cellular materials with extruded two dimensional geometry, the interleaved tube geometry presented here consists of two orthogonal axes of interleaved tubes with high interfacial surface area and relative volume that changes with fold-state. In addition, the foldability still allows for fabrication by a flat lamination process, similar to methods used for conventional expanded two dimensional cellular materials. This article presents the geometric characteristics of the structure together with corresponding kinematic and mechanical modeling, explaining the orthotropic elastic behavior of the structure with classical dimensional scaling analysis.

  2. PT-symmetry breaking with divergent potentials: Lattice and continuum cases

    NASA Astrophysics Data System (ADS)

    Joglekar, Yogesh N.; Scott, Derek D.; Saxena, Avadh

    2014-09-01

    We investigate the parity- and time-reversal (PT-) symmetry breaking in lattice models in the presence of long-ranged, non-Hermitian, PT-symmetric potentials that remain finite or become divergent in the continuum limit. By scaling analysis of the fragile PT threshold for an open finite lattice, we show that continuum loss-gain potentials Vα(x)∝i|x|αsgn(x) have a positive PT-breaking threshold for α >-2, and a zero threshold for α ≤-2. When α <0 localized states with complex (conjugate) energies in the continuum energy band occur at higher loss-gain strengths. We investigate the signatures of PT-symmetry breaking in coupled waveguides, and show that the emergence of localized states dramatically shortens the relevant time scale in the PT-symmetry broken region.

  3. Validity of the Cauchy-Born rule applied to discrete cellular-scale models of biological tissues

    NASA Astrophysics Data System (ADS)

    Davit, Y.; Osborne, J. M.; Byrne, H. M.; Gavaghan, D.; Pitt-Francis, J.

    2013-04-01

    The development of new models of biological tissues that consider cells in a discrete manner is becoming increasingly popular as an alternative to continuum methods based on partial differential equations, although formal relationships between the discrete and continuum frameworks remain to be established. For crystal mechanics, the discrete-to-continuum bridge is often made by assuming that local atom displacements can be mapped homogeneously from the mesoscale deformation gradient, an assumption known as the Cauchy-Born rule (CBR). Although the CBR does not hold exactly for noncrystalline materials, it may still be used as a first-order approximation for analytic calculations of effective stresses or strain energies. In this work, our goal is to investigate numerically the applicability of the CBR to two-dimensional cellular-scale models by assessing the mechanical behavior of model biological tissues, including crystalline (honeycomb) and noncrystalline reference states. The numerical procedure involves applying an affine deformation to the boundary cells and computing the quasistatic position of internal cells. The position of internal cells is then compared with the prediction of the CBR and an average deviation is calculated in the strain domain. For center-based cell models, we show that the CBR holds exactly when the deformation gradient is relatively small and the reference stress-free configuration is defined by a honeycomb lattice. We show further that the CBR may be used approximately when the reference state is perturbed from the honeycomb configuration. By contrast, for vertex-based cell models, a similar analysis reveals that the CBR does not provide a good representation of the tissue mechanics, even when the reference configuration is defined by a honeycomb lattice. The paper concludes with a discussion of the implications of these results for concurrent discrete and continuous modeling, adaptation of atom-to-continuum techniques to biological

  4. Multiscale gas-kinetic simulation for continuum and near-continuum flows.

    PubMed

    Xu, Kun; Liu, Hongwei

    2007-01-01

    It is well known that for increasingly rarefied flow fields, predictions from continuum formulations, such as the Navier-Stokes equations, lose accuracy. The inclusion of higher-order terms, such as Burnett or high-order moment equations, could improve the predictive capabilities of such continuum formulations, but there has been only limited success. Here, we present a multiscale model. On the macroscopic level, the flow variables are updated based on the mass, momentum, and energy conservation through the fluxes. On the other hand, the fluxes are constructed on the microscopic level based on the gas-kinetic equation, which is valid in both continuum and near-continuum flow regimes. Based on this model, the nonequilibrium shock structure, Poiseuille flow, nonlinear heat conduction problems, and unsteady Rayleigh problem will be studied. In the near-continuum flow regime, the current gas-kinetic simulation is more efficient than microscopic methods, such as the direction Boltzmann solver and direct-simulation Monte Carlo method. In the continuum flow limit, the current formulation will go back to the gas-kinetic Navier-Stokes flow solver automatically.

  5. Mirrored continuum and molecular scale simulations of the ignition of gamma phase RDX

    NASA Astrophysics Data System (ADS)

    Stewart, D. Scott; Chaudhuri, Santanu; Joshi, Kaushik; Lee, Kiabek

    2015-06-01

    We consider the ignition of a high-pressure gamma-phase of an explosive crystal of RDX which forms during overdriven shock initiation. Molecular dynamics (MD), with first-principles based or reactive force field based molecular potentials, provides a description of the chemistry as an extremely complex reaction network. The results of the molecular simulation is analyzed by sorting molecular product fragments into high and low molecular groups, to represent identifiable components that can be interpreted by a continuum model. A continuum model based on a Gibbs formulation, that has a single temperature and stress state for the mixture is used to represent the same RDX material and its chemistry. Each component in the continuum model has a corresponding Gibbs continuum potential, that are in turn inferred from molecular MD informed equation of state libraries such as CHEETAH, or are directly simulated by Monte Carlo MD simulations. Information about transport, kinetic rates and diffusion are derived from the MD simulation and the growth of a reactive hot spot in the RDX is studied with both simulations that mirror the other results to provide an essential, continuum/atomistic link. Supported by N000014-12-1-0555, subaward-36561937 (ONR).

  6. Lattice Boltzmann equation method for multiple immiscible continuum fluids.

    PubMed

    Spencer, T J; Halliday, I; Care, C M

    2010-12-01

    This paper generalizes the two-component algorithm of Sec. , extending it, in Sec. , to describe N>2 mutually immiscible fluids in the isothermal continuum regime. Each fluid has an independent interfacial tension. While retaining all its computational advantages, we remove entirely the empiricism associated with contact behavior in our previous multiple immiscible fluid models [M. M. Dupin, Phys. Rev. E 73, 055701(R) (2006); Med. Eng. Phys. 28, 13 (2006)] while solidifying the physical foundations. Moreover, the model relies upon a fluid-fluid segregation which is simpler, computationally faster, more free of artifacts (i.e., the interfacial microcurrent), and upon an interface-inducing force distribution which is analytic. The method is completely symmetric between any numbers of immiscible fluids and stable over a wide range of directly input interfacial tension. We present data on the steady-state properties of multiple interface model, which are in good agreement with theory [R. E. Johnson and S. S. Sadhal, Annu. Rev. Fluid Mech. 17, 289 (1985)], specifically on the shapes of multidrop systems. Section is an analysis of the kinetic and continuum-scale descriptions of the underlying two-component lattice Boltzmann model for immiscible fluids, extendable to more than two immiscible fluids. This extension requires (i) the use of a more local kinetic equation perturbation which is (ii) free from a reliance on measured interfacial curvature. It should be noted that viewed simply as a two-component method, the continuum algorithm is inferior to our previous methods, reported by Lishchuk [Phys. Rev. E 67, 036701 (2003)] and Halliday [Phys. Rev. E 76, 026708 (2007)]. Greater stability and parameter range is achieved in multiple drop simulations by using the forced multi-relaxation-time lattice Boltzmann method developed, along with (for completeness) a forced exactly incompressible Bhatnagar-Gross-Krook lattice Boltzmann model, in the Appendix. These appended schemes

  7. The South Carolina rural-urban HIV continuum of care.

    PubMed

    Edun, Babatunde; Iyer, Medha; Albrecht, Helmut; Weissman, Sharon

    2016-12-16

    The HIV continuum of care model is widely used by various agencies to describe the HIV epidemic in stages from diagnosis through to virologic suppression. It identifies the various points at which persons living with HIV (PLWHIV) within a population fail to reach their next step in HIV care. The rural population in the Southern United States is disproportionally affected by the HIV epidemic. The purpose of this study was to examine these rural-urban disparities using the HIV care continuum model and determine at what stages these differences become apparent. PLWHIV aged 13 years and older in South Carolina (SC) were identified using data from the enhanced HIV/AIDS Reporting System. The percentages of PLWHIV linked to care, retained in care, and virologically suppressed were determined. Rural versus urban residence was determined using the Office of Management and Budget classification. There were 14,523 PLWHIV in SC at the end of 2012; 11,193 (77%) of whom were categorized as urban and 3305 (22%) as rural. There was no difference between urban and rural for those who had received any care: 64% versus 64% (p = .61); retention in care 53% versus 53% (p = .71); and virologic suppression 49% versus 48% (p = .35), respectively. The SC rural-urban HIV cascade represents the first published cascade of care model using rural versus urban residence. Although significant health care disparities exist between rural and urban residents, there were no major differences between rural and urban residents at the various stages of engagement in HIV care using the HIV continuum of care model.

  8. Continuum of Collaboration: Little Steps for Little Feet

    ERIC Educational Resources Information Center

    Powell, Gwynn M.

    2013-01-01

    This mini-article outlines a continuum of collaboration for faculty within a department of the same discipline. The goal of illustrating this continuum is showcase different stages of collaboration so that faculty members can assess where they are as a collective and consider steps to collaborate more. The separate points along a continuum of…

  9. Mesoscopic and continuum modelling of angiogenesis

    PubMed Central

    Spill, F.; Guerrero, P.; Alarcon, T.; Maini, P. K.; Byrne, H. M.

    2016-01-01

    Angiogenesis is the formation of new blood vessels from pre-existing ones in response to chemical signals secreted by, for example, a wound or a tumour. In this paper, we propose a mesoscopic lattice-based model of angiogenesis, in which processes that include proliferation and cell movement are considered as stochastic events. By studying the dependence of the model on the lattice spacing and the number of cells involved, we are able to derive the deterministic continuum limit of our equations and compare it to similar existing models of angiogenesis. We further identify conditions under which the use of continuum models is justified, and others for which stochastic or discrete effects dominate. We also compare different stochastic models for the movement of endothelial tip cells which have the same macroscopic, deterministic behaviour, but lead to markedly different behaviour in terms of production of new vessel cells. PMID:24615007

  10. Robot strings: Long, thin continuum robots

    NASA Astrophysics Data System (ADS)

    Walker, I. D.

    We describe and discuss the development of long, thin, continuous “ string-like” robots aimed at Space exploration missions. These continuous backbone “ continuum” robots are inspired by numerous biological structures, particularly vines, worms, and the tongues of animals such as the anteater. The key novelty is the high length-to-diameter ratio of the robots. This morphology offers penetration into, and exploration of, significantly narrower and deeper environments than accessible using current robot technology. In this paper, we introduce new design alternatives for long thin continuum robots, based on an analysis and extension of three core existing continuum robot design types. The designs are evaluated based on their mechanical feasibility, structural properties, kinematic simplicity, and degrees of freedom.

  11. Models of Uranium continuum radio emission

    NASA Technical Reports Server (NTRS)

    Romig, Joseph H.; Evans, David R.; Sawyer, Constance B.; Schweitzer, Andrea E.; Warwick, James W.

    1987-01-01

    Uranium continuum radio emission detected by the Voyager 2 Planetary Radio Astronomy experiment during the January 1986 encounter is considered. The continuum emissions comprised four components (equatorial emissions, anomaly emissions, strong nightside emissions, and weak nightside emissions) associated with different sources. The equatorial emissions appeared most prominently during the days before closest approach and extended from 40 kHz or below to about 120 kHz. The anomaly emissions were seen about 12 hours before closest approach and extended to about 250 kHz. The agreement found between Miranda's phase and strong radio emission at 20.4 kHz, just after closest approach, suggests intense dynamic activity on the Miranda L shell.

  12. Continuum Statistics of the Airy2 Process

    NASA Astrophysics Data System (ADS)

    Corwin, Ivan; Quastel, Jeremy; Remenik, Daniel

    2013-01-01

    We develop an exact determinantal formula for the probability that the Airy_2 process is bounded by a function g on a finite interval. As an application, we provide a direct proof that {sup({A}2(x)-x^2)} is distributed as a GOE random variable. Both the continuum formula and the GOE result have applications in the study of the end point of an unconstrained directed polymer in a disordered environment. We explain Johansson's (Commun. Math. Phys. 242(1-2):277-329, 2003) observation that the GOE result follows from this polymer interpretation and exact results within that field. In a companion paper (Moreno Flores et al. in Commun. Math. Phys. 2012) these continuum statistics are used to compute the distribution of the endpoint of directed polymers.

  13. Entropic formulation of relativistic continuum mechanics.

    PubMed

    Fukuma, Masafumi; Sakatani, Yuho

    2011-08-01

    An entropic formulation of relativistic continuum mechanics is developed in the Landau-Lifshitz frame. We introduce two spatial scales, one being the small scale representing the linear size of each material particle and the other the large scale representing the linear size of a large system which consists of material particles and is to linearly regress to the equilibrium. We propose a local functional which is expected to represent the total entropy of the larger system and require the entropy functional to be maximized in the process of linear regression. We show that Onsager's original idea on linear regression can then be realized explicitly as current conservations with dissipative currents in the desired form. We demonstrate the effectiveness of this formulation by showing that one can treat a wide class of relativistic continuum materials, including standard relativistic viscous fluids and relativistic viscoelastic materials.

  14. Automatic continuum analysis of reflectance spectra

    NASA Technical Reports Server (NTRS)

    Clark, Roger N.; King, Trude V. V.

    1987-01-01

    A continuum algorithm based on a Segmented Upper Hull method (SUH) is described. An upper hull is performed on segments of a spectrum defined by local minima and maxima. The segments making a complete spectrum are then combined. The definition of the upper hull allows the continuum to be both concave and/or convex, adapting to the shape of the spectrum. The method performs multiple passes on a spectrum by segmenting each local maximum to minimum and performing an upper hull. The algorithm naturally adapts to the widths of absorption features, so that all features are found, including the nature of doublets, triplets, etc. The algorithm is also reasonably fast on common minicomputers so that it might be applied to the large data sets from imaging spectrometers.

  15. Steering continuum electron dynamics by low-energy attosecond streaking

    NASA Astrophysics Data System (ADS)

    Geng, Ji-Wei; Xiong, Wei-Hao; Xiao, Xiang-Ru; Gong, Qihuang; Peng, Liang-You

    2016-08-01

    A semiclassical model is developed to understand the electronic dynamics in the low-energy attosecond streaking. Under a relatively strong infrared (IR) pulse, the low-energy part of photoelectrons initialized by a single attosecond pulse (SAP) can either rescatter with the ionic core and induce interferences structures in the momentum spectra of the ionized electrons or be recaptured into the Rydberg states. The Coulomb potential plays essential roles in both the electron rescattering and recapturing processes. We find that by changing the time delay between the SAP and the IR pulse, the photoelectrons yield or the population of the Rydberg states can be effectively controlled. The present study demonstrates a fascinating way to steer the electron motion in the continuum.

  16. A continuum model of a multilayer nanosheet

    NASA Astrophysics Data System (ADS)

    Morozov, N. F.; Tovstik, P. E.; Tovstik, T. P.

    2016-11-01

    A continuum model for describing the bending and free vibrations of a crystalline graphite sheet consisting of graphene layers is proposed. Graphene is modeled by a two-dimensional layer having a finite rigidity under extension and bending. The interval between graphene layers through which their Van-der-Waals interaction occurs is modeled by a fictitious layer with relatively low rigidity. In the solution, formulas describing the bending of a multilayer sheet with alternating rigid and soft layers are used.

  17. Lattice Boltzmann algorithm for continuum multicomponent flow

    NASA Astrophysics Data System (ADS)

    Halliday, I.; Hollis, A. P.; Care, C. M.

    2007-08-01

    We present a multicomponent lattice Boltzmann simulation for continuum fluid mechanics, paying particular attention to the component segregation part of the underlying algorithm. In the principal result of this paper, the dynamics of a component index, or phase field, is obtained for a segregation method after U. D’Ortona [Phys. Rev. E 51, 3718 (1995)], due to Latva-Kokko and Rothman [Phys. Rev. E 71 056702 (2005)]. The said dynamics accord with a simulation designed to address multicomponent flow in the continuum approximation and underwrite improved simulation performance in two main ways: (i) by reducing the interfacial microcurrent activity considerably and (ii) by facilitating simulational access to regimes of flow with a low capillary number and drop Reynolds number [I. Halliday, R. Law, C. M. Care, and A. Hollis, Phys. Rev. E 73, 056708 (2006)]. The component segregation method studied, used in conjunction with Lishchuk’s method [S. V. Lishchuk, C. M. Care, and I. Halliday, Phys. Rev. E 67, 036701 (2003)], produces an interface, which is distributed in terms of its component index; however, the hydrodynamic boundary conditions which emerge are shown to support the notion of a sharp, unstructured, continuum interface.

  18. Polymer Fluid Dynamics: Continuum and Molecular Approaches.

    PubMed

    Bird, R B; Giacomin, A J

    2016-06-07

    To solve problems in polymer fluid dynamics, one needs the equations of continuity, motion, and energy. The last two equations contain the stress tensor and the heat-flux vector for the material. There are two ways to formulate the stress tensor: (a) One can write a continuum expression for the stress tensor in terms of kinematic tensors, or (b) one can select a molecular model that represents the polymer molecule and then develop an expression for the stress tensor from kinetic theory. The advantage of the kinetic theory approach is that one gets information about the relation between the molecular structure of the polymers and the rheological properties. We restrict the discussion primarily to the simplest stress tensor expressions or constitutive equations containing from two to four adjustable parameters, although we do indicate how these formulations may be extended to give more complicated expressions. We also explore how these simplest expressions are recovered as special cases of a more general framework, the Oldroyd 8-constant model. Studying the simplest models allows us to discover which types of empiricisms or molecular models seem to be worth investigating further. We also explore equivalences between continuum and molecular approaches. We restrict the discussion to several types of simple flows, such as shearing flows and extensional flows, which are of greatest importance in industrial operations. Furthermore, if these simple flows cannot be well described by continuum or molecular models, then it is not necessary to lavish time and energy to apply them to more complex flow problems.

  19. Bipotential continuum models for granular mechanics

    NASA Astrophysics Data System (ADS)

    Goddard, Joe

    2014-03-01

    Most currently popular continuum models for granular media are special cases of a generalized Maxwell fluid model, which describes the evolution of stress and internal variables such as granular particle fraction and fabric,in terms of imposed strain rate. It is shown how such models can be obtained from two scalar potentials, a standard elastic free energy and a ``dissipation potential'' given rigorously by the mathematical theory of Edelen. This allows for a relatively easy derivation of properly invariant continuum models for granular media and fluid-particle suspensions within a thermodynamically consistent framework. The resulting continuum models encompass all the prominent regimes of granular flow, ranging from the quasi-static to rapidly sheared, and are readily extended to include higher-gradient or Cosserat effects. Models involving stress diffusion, such as that proposed recently by Kamrin and Koval (PRL 108 178301), provide an alternative approach that is mentioned in passing. This paper provides a brief overview of a forthcoming review articles by the speaker (The Princeton Companion to Applied Mathematics, and Appl. Mech. Rev.,in the press, 2013).

  20. Improvements in continuum modeling for biomolecular systems

    NASA Astrophysics Data System (ADS)

    Yu, Qiao; Ben-Zhuo, Lu

    2016-01-01

    Modeling of biomolecular systems plays an essential role in understanding biological processes, such as ionic flow across channels, protein modification or interaction, and cell signaling. The continuum model described by the Poisson- Boltzmann (PB)/Poisson-Nernst-Planck (PNP) equations has made great contributions towards simulation of these processes. However, the model has shortcomings in its commonly used form and cannot capture (or cannot accurately capture) some important physical properties of the biological systems. Considerable efforts have been made to improve the continuum model to account for discrete particle interactions and to make progress in numerical methods to provide accurate and efficient simulations. This review will summarize recent main improvements in continuum modeling for biomolecular systems, with focus on the size-modified models, the coupling of the classical density functional theory and the PNP equations, the coupling of polar and nonpolar interactions, and numerical progress. Project supported by the National Natural Science Foundation of China (Grant No. 91230106) and the Chinese Academy of Sciences Program for Cross & Cooperative Team of the Science & Technology Innovation.

  1. Hydrodynamic fluctuations in a particle-continuum hybrid for complex fluids

    NASA Astrophysics Data System (ADS)

    Garcia, Alejandro L.; Donev, Aleksandar; Bell, John B.; Alder, Berni J.

    2011-05-01

    A previously-developed hybrid particle-continuum method [J. B. Bell, A. Garcia and S. A. Williams, SIAM Multiscale Modeling and Simulation, 6:1256-1280, 2008] is generalized to dense fluids and two and three dimensional flows. The scheme couples an explicit fluctuating compressible Navier-Stokes solver with the Isotropic Direct Simulation Monte Carlo (DSMC) particle method [A. Donev and A. L. Garcia and B. J. Alder, J. Stat. Mech., 2009(11):P11008, 2009]. To achieve bidirectional dynamic coupling between the particle (microscale) and continuum (macroscale) regions, the continuum solver provides state-based boundary conditions to the particle subdomain, while the particle solver provides flux-based boundary conditions for the continuum subdomain; see [A. Donev, J.B. Bell, A. Garcia, and B. Alder, SIAM Multiscale Modeling and Simulation, 8:871-911, 2010.] for details. This paper summarizes two important numerical tests: First, the equilibrium diffusive (Brownian) motion of a large spherical bead suspended in a particle fluid is examined, demonstrating that the hybrid method correctly reproduces the velocity autocorrelation function of the bead but only if thermal fluctuations are included in the continuum solver. Second, the new scheme is applied to the well-known adiabatic piston problem and we find that it correctly reproduces the slow non-equilibrium relaxation of the piston toward thermodynamic equilibrium but, again, only if the continuum solver includes stochastic (white-noise) flux terms. These two fundamental examples clearly demonstrate the need to include fluctuations in continuum solvers employed in hybrid multiscale methods.

  2. Graduate Medical Education: Its Role in Achieving a True Medical Education Continuum.

    PubMed

    Aschenbrener, Carol A; Ast, Cori; Kirch, Darrell G

    2015-09-01

    Nearly half a century ago, Lowell T. Coggeshall recommended, through what has come to be known as the Coggeshall Report, that physician education-medical school (or undergraduate medical education [UME]), residency training (or graduate medical education [GME]), and continuing medical education (CME)-be "planned and provided as a continuum." While the dream of a true continuum remains unfulfilled, recent innovations focused on defining and assessing meaningful outcomes at last offer the anchor for the creation of a seamless, flexible, and ongoing pathway for the preparation of physicians. Recent innovations, including a widely accepted competency framework and entrustable professional activities (EPAs), provide key tools for creating a continuum. The competency framework is being leveraged in UME, GME, and CME and is serving as the foundation for the continuum. Learners and those who assess them are increasingly relying on observable behaviors (e.g., EPAs) to determine progress. The GME community in the United States and Canada has played-and continues to play-a leading role in the creation of these tools and a true medical education continuum. Despite some systemic challenges to implementation (e.g., premedical learner formation, time-in-step requirements), the GME community is already operationalizing these tools as a basis for other innovations that are improving transitions across the continuum (e.g., competency-based progression of residents). The medical education community's greatest responsibility in the years ahead will be to build on these efforts in GME-joining together to learn from one another and develop a continuum that serves the public and the profession.

  3. Rural Primary Care Providers' Perceptions of Their Role in the Breast Cancer Care Continuum

    ERIC Educational Resources Information Center

    Rayman, Kathleen M.; Edwards, Joellen

    2010-01-01

    Context: Rural women in the United States experience disparity in breast cancer diagnosis and treatment when compared to their urban counterparts. Given the 11% chance of lifetime occurrence of breast cancer for women overall, the continuum of breast cancer screening, diagnosis, treatment, and recovery are of legitimate concern to rural women and…

  4. Electrophilic, Ambiphilic, and Nucleophilic C-H bond Activation. Understanding the electronic continuum of C-H bond activation through transition-state and reaction pathway interaction energy decompositions

    SciTech Connect

    Ess, Daniel H.; Goddard, William A.; Periana, Roy A.

    2010-10-29

    The potential energy and interaction energy profiles for metal- and metal-ligand-mediated alkane C-H bond activation were explored using B3LYP density functional theory (DFT) and the absolutely localized molecular orbital energy decomposition analysis (ALMO-EDA). The set of complexes explored range from late transition metal group 10 (Pt and Pd) and group 11 (Au) metal centers to group 7-9 (Ir, Rh, Ru, and W) metal centers as well as a group 3 Sc complex. The coordination geometries, electron metal count (d8, d6, d4, and d0), and ligands (N-heterocycles, O-donor, phosphine, and Cp*) are also diverse. Quantitative analysis using ALMO-EDA of both directions of charge-transfer stabilization (occupied to unoccupied orbital stabilization) energies between the metal-ligand fragment and the coordinated C-H bond in the transition state for cleavage of the C-H bond allows classification of C-H activation reactions as electrophilic, ambiphilic, or nucleophilic on the basis of the net direction of charge-transfer energy stabilization. This bonding pattern transcends any specific mechanistic or bonding paradigm, such as oxidative addition, σ-bond metathesis, or substitution. Late transition metals such as Au(III), Pt(II), Pd(II), and Rh(III) metal centers with N-heterocycle, halide, or O-donor ligands show electrophilically dominated reaction profiles with forward charge-transfer from the C-H bond to the metal, leading to more stabilization than reverse charge transfer from the metal to the C-H bond. Transition states and reaction profiles for d6 Ru(II) and Ir(III) metals with Tp and acac ligands were found to have nearly equal forward and reverse charge-transfer energy stabilization. This ambiphilic region also includes the classically labeled electrophilic cationic species Cp*(PMe3)Ir(Me). Nucleophilic character, where the metal to C-H bond charge-transfer interaction is most stabilizing, was found in

  5. Dyson-Schwinger equations : density, temperature and continuum strong QCD.

    SciTech Connect

    Roberts, C. D.; Schmidt, S. M.; Physics

    2000-01-01

    Continuum strong QCD is the application of models and continuum quantum field theory to the study of phenomena in hadronic physics, which includes; e.g., the spectrum of QCD bound states and their interactions; and the transition to, and properties of, a quark gluon plasma. We provide a contemporary perspective, couched primarily in terms of the Dyson-Schwinger equations but also making comparisons with other approaches and models. Our discourse provides a practitioners' guide to features of the Dyson-Schwinger equations [such as confinement and dynamical chiral symmetry breaking] and canvasses phenomenological applications to light meson and baryon properties in cold, sparse QCD. These provide the foundation for an extension to hot, dense QCD, which is probed via the introduction of the intensive thermodynamic variables: chemical potential and temperature. We describe order parameters whose evolution signals deconfinement and chiral symmetry restoration, and chronicle their use in demarcating the quark gluon plasma phase boundary and characterizing the plasma's properties. Hadron traits change in an equilibrated plasma. We exemplify this and discuss putative signals of the effects. Finally, since plasma formation is not an equilibrium process, we discuss recent developments in kinetic theory and its application to describing the evolution from a relativistic heavy ion collision to an equilibrated quark gluon plasma.

  6. Minimal continuum theories of structure formation in dense active fluids

    NASA Astrophysics Data System (ADS)

    Dunkel, Jörn; Heidenreich, Sebastian; Bär, Markus; Goldstein, Raymond E.

    2013-04-01

    Self-sustained dynamical phases of living matter can exhibit remarkable similarities over a wide range of scales, from mesoscopic vortex structures in microbial suspensions and motility assays of biopolymers to turbulent large-scale instabilities in flocks of birds or schools of fish. Here, we argue that, in many cases, the phenomenology of such active states can be efficiently described in terms of fourth- and higher-order partial differential equations. Structural transitions in these models can be interpreted as Landau-type kinematic transitions in Fourier (wavenumber) space, suggesting that microscopically different biological systems can share universal long-wavelength features. This general idea is illustrated through numerical simulations for two classes of continuum models for incompressible active fluids: a Swift-Hohenberg-type scalar field theory, and a minimal vector model that extends the classical Toner-Tu theory and appears to be a promising candidate for the quantitative description of dense bacterial suspensions. We discuss how microscopic symmetry-breaking mechanisms can enter macroscopic continuum descriptions of collective microbial motion near surfaces, and conclude by outlining future applications.

  7. Covariant formulation of the governing equations of continuum mechanics in an Eulerian description

    NASA Astrophysics Data System (ADS)

    Schöberl, Markus; Schlacher, Kurt

    2007-05-01

    We present the balance relations for a continuum in the Eulerian formulation in a pure covariant fashion. Based on the analysis of nonrelativistic particle mechanics, we adapt the covariant description to the case of a continuum. The use of the covariant Nijenhuis differential as well as the splitting of the vertical configuration bundle are the key objects that allow a coordinate-free representation. We state the balance equations such that they are valid, also when time variant transformations are applied, which leads to a nontrivial space-time connection and a metric which explicitly depends on the time.

  8. Sexual Orientation: Categories or Continuum? Commentary on Bailey et al. (2016).

    PubMed

    Savin-Williams, Ritch C

    2016-09-01

    Bailey et al. (2016) have provided an excellent, state-of-the-art overview that is a major contribution to our understanding of sexual orientation. However, whereas Bailey and his coauthors have examined the physiological, behavioral, and self-report data of sexual orientation and see categories, I see a sexual and romantic continuum. After noting several objections concerning the limitations of the review and methodological shortcomings characteristic of sexual-orientation research in general, I present evidence from research investigating in-between sexualities to support an alternative, continuum-based perspective regarding the nature of sexual orientation for both women and men. A continuum conceptualization has potential implications for investigating the prevalence of nonheterosexuals, sexual-orientation differences in gender nonconformity, causes of sexual orientation, and political issues.

  9. A robust, coupled approach for atomistic-continuum simulation.

    SciTech Connect

    Aubry, Sylvie; Webb, Edmund Blackburn, III; Wagner, Gregory John; Klein, Patrick A.; Jones, Reese E.; Zimmerman, Jonathan A.; Bammann, Douglas J.; Hoyt, Jeffrey John; Kimmer, Christopher J.

    2004-09-01

    This report is a collection of documents written by the group members of the Engineering Sciences Research Foundation (ESRF), Laboratory Directed Research and Development (LDRD) project titled 'A Robust, Coupled Approach to Atomistic-Continuum Simulation'. Presented in this document is the development of a formulation for performing quasistatic, coupled, atomistic-continuum simulation that includes cross terms in the equilibrium equations that arise due to kinematic coupling and corrections used for the calculation of system potential energy to account for continuum elements that overlap regions containing atomic bonds, evaluations of thermo-mechanical continuum quantities calculated within atomistic simulations including measures of stress, temperature and heat flux, calculation used to determine the appropriate spatial and time averaging necessary to enable these atomistically-defined expressions to have the same physical meaning as their continuum counterparts, and a formulation to quantify a continuum 'temperature field', the first step towards constructing a coupled atomistic-continuum approach capable of finite temperature and dynamic analyses.

  10. Modeling biological tissue growth: discrete to continuum representations.

    PubMed

    Hywood, Jack D; Hackett-Jones, Emily J; Landman, Kerry A

    2013-09-01

    There is much interest in building deterministic continuum models from discrete agent-based models governed by local stochastic rules where an agent represents a biological cell. In developmental biology, cells are able to move and undergo cell division on and within growing tissues. A growing tissue is itself made up of cells which undergo cell division, thereby providing a significant transport mechanism for other cells within it. We develop a discrete agent-based model where domain agents represent tissue cells. Each agent has the ability to undergo a proliferation event whereby an additional domain agent is incorporated into the lattice. If a probability distribution describes the waiting times between proliferation events for an individual agent, then the total length of the domain is a random variable. The average behavior of these stochastically proliferating agents defining the growing lattice is determined in terms of a Fokker-Planck equation, with an advection and diffusion term. The diffusion term differs from the one obtained Landman and Binder [J. Theor. Biol. 259, 541 (2009)] when the rate of growth of the domain is specified, but the choice of agents is random. This discrepancy is reconciled by determining a discrete-time master equation for this process and an associated asymmetric nonexclusion random walk, together with consideration of synchronous and asynchronous updating schemes. All theoretical results are confirmed with numerical simulations. This study furthers our understanding of the relationship between agent-based rules, their implementation, and their associated partial differential equations. Since tissue growth is a significant cellular transport mechanism during embryonic growth, it is important to use the correct partial differential equation description when combining with other cellular functions.

  11. Hierarchical cellular materials

    SciTech Connect

    Gibson, L.J.

    1991-12-31

    In this paper a method for estimating the contributions of both the composite and the cellular microstructures to the overall material properties and the mechanical efficiency of natural cellular solids will be described. The method will be demonstrated by focusing on the Young`s modulus; similar techniques can be used for other material properties. The results suggest efficient microstructures for engineered cellular materials.

  12. Hierarchical cellular materials

    SciTech Connect

    Gibson, L.J.

    1991-01-01

    In this paper a method for estimating the contributions of both the composite and the cellular microstructures to the overall material properties and the mechanical efficiency of natural cellular solids will be described. The method will be demonstrated by focusing on the Young's modulus; similar techniques can be used for other material properties. The results suggest efficient microstructures for engineered cellular materials.

  13. Critique of dual continuum formulations of multicomponent reactive transport in fractured porous media

    NASA Astrophysics Data System (ADS)

    Lichtner, Peter C.

    Subsurface flow processes may take place at many different scales. The different scales refer to rock pore structure, microfractures, distinct fracture networks (ranging from small to large fracture spacing), and even faults. Presently, there is no satisfactory methodology for quantitatively describing flow and reactive transport in multiscale media. Approaches commonly applied to model fractured systems include single continuum models (SCM), equivalent continuum models (ECM), discrete fracture models (DFM), and various forms of dual continuum models (DCM). The SCM describes flow in the fracture network only and is valid in the absence of fracture-matrix interaction. The ECM, on the other hand, requires pervasive interaction between fracture and matrix and is based on averaging their properties. The ECM is characterized by equal fracture and matrix solute concentrations, but generally different mineral concentrations. The DFM is perhaps the most rigorous, but would require inordinate computational resources for a highly fractured rock mass. The DCM represents a fractured porous medium as two interacting continuums with one continuum corresponding to the fracture network and the other the matrix. A coupling term provides mass transfer between the two continuums. Values for mineral and solute concentrations and other properties such as liquid saturation state may be assigned individually to fracture and matrix. Two forms of the DCM are considered, characterized by connected and disconnected matrix blocks. The former is referred to as the dual continuum connected matrix (DCCM) model and the latter as the dual continuum disconnected matrix (DCDM) model. In contrast to the DCCM model, in which concentration gradients in the matrix are allowed only parallel to the fracture, the DFM provides for matrix concentration gradients perpendicular to the fracture. The DFM and DCCM models can agree with each other only in the case where both reduce to the ECM. The DCCM model

  14. Modeling yarn slip in woven fabric at the continuum level: Simulations of ballistic impact

    NASA Astrophysics Data System (ADS)

    Parsons, Ethan M.; King, Michael J.; Socrate, Simona

    2013-01-01

    Woven fabric is used in a wide variety of military and commercial products—both in neat form and as the reinforcement phase of composites. In many applications, yarn slip, the relative sliding of the yarns composing the weave, is an important mode of deformation or failure. Yarn slip can significantly change the energy absorption capacity and yarn density of the fabric and also cause yarns to unravel from the weave. Virtually all existing models for woven fabric that allow yarn slip are discrete in nature. They simulate every yarn in the weave and are therefore computationally expensive and difficult to integrate with other material models. A promising alternative to discrete models is the mesostructure-based continuum technique. With this technique, homogenized continuum properties are determined from a deforming analytic model of the fabric mesostructure at each material point. Yarn-level mechanisms of deformation are thus captured without the computational cost of simulating every yarn in the fabric. However, existing mesostructure-based continuum models treat the yarns as pinned together at the cross-over points of the weave, and an operative model that allows yarn slip has not been published. Here, we introduce a mesostructure-based continuum model that permits yarn slip and use the model to simulate the ballistic impact of woven fabric. In our approach, the weave is the continuum substrate on which the model is anchored, and slip of the yarns occurs relative to the weave continuum. The cross-over points of the weave act as the material points of the continuum, and the evolution of the local weave mesostructure at each point of the continuum is represented by state variables. At the same time, slip velocity fields simulate the slip of each yarn family relative to the weave continuum and therefore control the evolution of the yarn pitch. We found that simulating yarn slip significantly improves finite element predictions of the ballistic impact of a Kevlar

  15. Continuum models for epitaxial growth with elasticity

    NASA Astrophysics Data System (ADS)

    Xiang, Yang

    In heteroepitaxial growth, the mismatch between the lattice constants in the film and the substrate causes misfit strain in the film, making a flat surface unstable to small perturbations. This morphological instability is called Asaro-Tiller-Grinfeld (ATG) instability, which can drive the film to self-organize into nanostructures such as quantum wires or quantum dots. At low temperature, the surface consists of steps and facets, when the misfit strain causes step bunching, traditional continuum models for ATG instability does not apply directly. In the first part of this thesis, we derive a PDE model for step bunching by taking the continuum limit of the discrete models proposed by Tersoff et al and Duport et al. We study the linear instability of a uniform step train with small perturbations and compare our results with those of discrete models and continuum models for traditional ATG instability. We numerically study the nonlinear evolution of this instability and compare our results with those of discrete models. We also study the equilibrium shapes of step bunches and explain their coalescence. In the second part of this thesis, we derive a nonlinear approximate PDE for the ATG instability. In the ATG instability, the misfit strain is coupled with surface morphology and an elasticity problem must be solved numerically. Linear approximation is made in some cases such as when computing the equilibrium island shapes. Using the exact solution for a cycloid surface obtained by Chiu and Gao, we find that our nonlinear approximation has a wider range of applicability than linear approximation. Numerical simulation using our nonlinear PDE model predicts formation of a cusp-like surface morphology from initially small perturbations of flat surfaces, which agrees well with the result obtained by Spencer and Meiron by solving the elasticity problem numerically.

  16. Interpreting angina: symptoms along a gender continuum

    PubMed Central

    Crea-Arsenio, Mary; Shannon, Harry S; Velianou, James L; Giacomini, Mita

    2016-01-01

    Background ‘Typical’ angina is often used to describe symptoms common among men, while ‘atypical’ angina is used to describe symptoms common among women, despite a higher prevalence of angina among women. This discrepancy is a source of controversy in cardiac care among women. Objectives To redefine angina by (1) qualitatively comparing angina symptoms and experiences in women and men and (2) to propose a more meaningful construct of angina that integrates a more gender-centred approach. Methods Patients were recruited between July and December 2010 from a tertiary cardiac care centre and interviewed immediately prior to their first angiogram. Symptoms were explored through in-depth semi-structured interviews, transcribed verbatim and analysed concurrently using a modified grounded theory approach. Angiographically significant disease was assessed at ≥70% stenosis of a major epicardial vessel. Results Among 31 total patients, 13 men and 14 women had angiograpically significant CAD. Patients describe angina symptoms according to 6 symptomatic subthemes that array along a ‘gender continuum’. Gender-specific symptoms are anchored at each end of the continuum. At the centre of the continuum, are a remarkably large number of symptoms commonly expressed by both men and women. Conclusions The ‘gender continuum’ offers new insights into angina experiences of angiography candidates. Notably, there is more overlap of shared experiences between men and women than conventionally thought. The gender continuum can help researchers and clinicians contextualise patient symptom reports, avoiding the conventional ‘typical’ versus ‘atypical’ distinction that can misrepresent gendered angina experiences. PMID:27158523

  17. Three-body Coulomb continuum problem

    NASA Astrophysics Data System (ADS)

    Berakdar, J.; Briggs, J. S.

    1994-06-01

    A symmetric representation of the three-body Coulomb continuum wave function as a product of three two-body Coulomb wave functions is modified to allow for three-body effects whereby the Sommerfeld parameter describing the strength of interaction of any two particles is affected by the presence of the third particle. This approach gives excellent agreement with near-threshold absolute (e,2e) ionization cross sections. In particular a recently observed deep minimum in noncoplanar geometry is reproduced for the first time.

  18. Millimeter Continuum Observations Of Disk Solids

    NASA Astrophysics Data System (ADS)

    Andrews, Sean

    2016-07-01

    I will offer a condensed overview of some key issues in protoplanetary disk research that makes use interferometric measurements of the millimeter-wavelength continuum emitted by their solid particles. Several lines of evidence now qualitatively support theoretical models for the growth and migration of disk solids, but also advertise a quantitative tension with the traditional efficiency of that evolution. New observations of small-scale substructures in disks might both reconcile the conflict and shift our focus in the mechanics of planet formation.

  19. Continuum description of avalanches in granular media.

    SciTech Connect

    Aranson, I. S.; Tsimring, L. S.

    2000-12-05

    A continuum theory of partially fluidized granular flows is proposed. The theory is based on a combination of the mass and momentum conservation equations with the order parameter equation which describes the transition between flowing and static components of the granular system. We apply this model to the dynamics of avalanches in chutes. The theory provides a quantitative description of recent observations of granular flows on rough inclined planes (Daerr and Douady 1999): layer bistability, and the transition from triangular avalanches propagating downhill at small inclination angles to balloon-shaped avalanches also propagating uphill for larger angles.

  20. Dust continuum spectra from model HII regions

    NASA Technical Reports Server (NTRS)

    Aannestad, P. A.; Emery, R. J.

    1989-01-01

    The infrared spectrum emitted by nebular dust, heated by the ionizing stars in H II blisters and spherical H II regions, is calculated for various model parameters. Absorption of the non-ionizing radiation in a neutral layer is included. Heating by the Lyman alpha photon field is taken into account. The dust is composed of silicate and graphite grains, and evaporation of the grains in the inner region is considered. The models are presented with a view to interpretation of infrared observations of dusty H II regions and can be applied directly to the infrared astronomy satellite survey data. The continuum emission is compared with calculated fine structure line emission.

  1. Simulations of plasma sheaths using continuum kinetic models

    NASA Astrophysics Data System (ADS)

    Srinivasan, Bhuvana; Hakim, Ammar

    2015-11-01

    Understanding plasma sheath physics is important for the performance of devices such as Hall thrusters due to the effect of energetic particles on electrode erosion. Plasma sheath physics is studied using kinetic and multi-fluid models with relevance to secondary electron emissions and plasma-surface interactions. Continuum kinetic models are developed to directly solve the Vlasov-Poisson equation using the discontinuous Galerkin method for each of the ion and electron species. A steady-state sheath is simulated by including a simple model for a neutral fluid. Multi-fluid simulations for the plasma sheath are also performed using the discontinuous Galerkin method to solve a complete set of fluid equations for each of the ion and electron species. The kinetic plasma sheath is compared to a multi-fluid plasma sheath. Supported by Air Force Office of Scientific Research.

  2. Formative pluripotency: the executive phase in a developmental continuum.

    PubMed

    Smith, Austin

    2017-02-01

    The regulative capability of single cells to give rise to all primary embryonic lineages is termed pluripotency. Observations of fluctuating gene expression and phenotypic heterogeneity in vitro have fostered a conception of pluripotency as an intrinsically metastable and precarious state. However, in the embryo and in defined culture environments the properties of pluripotent cells change in an orderly sequence. Two phases of pluripotency, called naïve and primed, have previously been described. In this Hypothesis article, a third phase, called formative pluripotency, is proposed to exist as part of a developmental continuum between the naïve and primed phases. The formative phase is hypothesised to be enabling for the execution of pluripotency, entailing remodelling of transcriptional, epigenetic, signalling and metabolic networks to constitute multi-lineage competence and responsiveness to specification cues.

  3. Fast convergence to equilibrium for long-chain polymer melts using a MD/continuum hybrid method.

    PubMed

    Senda, Yasuhiro; Fujio, Miyuki; Shimamura, Shuji; Blomqvist, Janne; Nieminen, Risto M

    2012-10-21

    Effective and fast convergence toward an equilibrium state for long-chain polymer melts is realized by a hybrid method coupling molecular dynamics and the elastic continuum. The required simulation time to achieve the equilibrium state is reduced compared with conventional equilibration methods. The polymers move on a wide range phase space due to large-scale fluctuation generated by the elastic continuum. A variety of chain structures is generated in the polymer melt which results in the fast convergence to the equilibrium state.

  4. Continuum robot arms inspired by cephalopods

    NASA Astrophysics Data System (ADS)

    Walker, Ian D.; Dawson, Darren M.; Flash, Tamar; Grasso, Frank W.; Hanlon, Roger T.; Hochner, Binyamin; Kier, William M.; Pagano, Christopher C.; Rahn, Christopher D.; Zhang, Qiming M.

    2005-05-01

    In this paper, we describe our recent results in the development of a new class of soft, continuous backbone ("continuum") robot manipulators. Our work is strongly motivated by the dexterous appendages found in cephalopods, particularly the arms and suckers of octopus, and the arms and tentacles of squid. Our ongoing investigation of these animals reveals interesting and unexpected functional aspects of their structure and behavior. The arrangement and dynamic operation of muscles and connective tissue observed in the arms of a variety of octopus species motivate the underlying design approach for our soft manipulators. These artificial manipulators feature biomimetic actuators, including artificial muscles based on both electro-active polymers (EAP) and pneumatic (McKibben) muscles. They feature a "clean" continuous backbone design, redundant degrees of freedom, and exhibit significant compliance that provides novel operational capacities during environmental interaction and object manipulation. The unusual compliance and redundant degrees of freedom provide strong potential for application to delicate tasks in cluttered and/or unstructured environments. Our aim is to endow these compliant robotic mechanisms with the diverse and dexterous grasping behavior observed in octopuses. To this end, we are conducting fundamental research into the manipulation tactics, sensory biology, and neural control of octopuses. This work in turn leads to novel approaches to motion planning and operator interfaces for the robots. The paper describes the above efforts, along with the results of our development of a series of continuum tentacle-like robots, demonstrating the unique abilities of biologically-inspired design.

  5. Mid-IR super-continuum generation

    NASA Astrophysics Data System (ADS)

    Islam, Mohammed N.; Xia, Chenan; Freeman, Mike J.; Mauricio, Jeremiah; Zakel, Andy; Ke, Kevin; Xu, Zhao; Terry, Fred L., Jr.

    2009-02-01

    A Mid-InfraRed FIber Laser (MIRFIL) has been developed that generates super-continuum covering the spectral range from 0.8 to 4.5 microns with a time-averaged power as high as 10.5W. The MIRFIL is an all-fiber integrated laser with no moving parts and no mode-locked lasers that uses commercial off-the-shelf parts and leverages the mature telecom/fiber optics platform. The MIRFIL power can be easily scaled by changing the repetition rate and modifying the erbium-doped fiber amplifier. Some of the applications using the super-continuum laser will be described in defense, homeland security and healthcare. For example, the MIRFIL is being applied to a catheter-based medical diagnostic system to detect vulnerable plaque, which is responsible for most heart attacks resulting from hardening-of-the-arteries or atherosclerosis. More generally, the MIRFIL can be a platform for selective ablation of lipids without damaging normal protein or smooth muscle tissue.

  6. Ash Dispersal in Planetary Atmospheres: Continuum vs. Non-continuum Effects

    NASA Astrophysics Data System (ADS)

    Fagents, S. A.; Baloga, S. M.; Glaze, L. S.

    2013-12-01

    The dispersal of ash from a volcanic vent on any given planet is dictated by particle properties (density, shape, and size distribution), the intensity of the eruptive source, and the characteristics of the planetary environment (atmospheric structure, wind field, and gravity) into which the ash is erupted. Relating observations of potential pyroclastic deposits to source locations and eruption conditions requires a detailed quantitative understanding of the settling rates of individual particles under changing ambient conditions. For atmospheres that are well described by continuum mechanics, the conventional Newtonian description of particle motion allows particle settling velocities to be related to particle characteristics via a drag coefficient. However, under rarefied atmospheric conditions (i.e., on Mars and at high altitude on Earth), non-continuum effects become important for ash-sized particles, and an equation of motion based on statistical mechanics is required for calculating particle motion. We have developed a rigorous new treatment of particle settling under variable atmospheric conditions and applied it to Earth and Mars. When non-continuum effects are important (as dictated by the mean free path of atmospheric gas relative to the particle size), fall velocities are greater than those calculated by continuum mechanics. When continuum conditions (i.e., higher atmospheric densities) are reached during descent, our model switches to a conventional formulation that determines the appropriate drag coefficient as the particle transits varying atmospheric properties. The variation of settling velocity with altitude allows computation of particle trajectories, fall durations and downwind dispersal. Our theoretical and numerical analyses show that several key, competing factors strongly influence the downwind trajectories of ash particles and the extents of the resulting deposits. These factors include: the shape of the particles (non-spherical particles

  7. Wave functions for continuum states of charged fragments

    NASA Astrophysics Data System (ADS)

    Ward, S. J.; Macek, J. H.

    1994-02-01

    Briggs's representation [Phys. Rev. A 41, 539 (1990)] of the Mo/ller wave operator for multiparticle wave functions is applied to charged fragments using a limiting procedure to correctly account for the slow decrease of Coulomb interactions with distance. Approximate wave functions used to model (e,2e) angular correlation measurments are obtained. Computed and measured angular correlations are compared to clarify the region of applicability of two approximations.

  8. Non-coherent Continuum Scattering as a Line Polarization Mechanism

    NASA Astrophysics Data System (ADS)

    del Pino Alemán, T.; Manso Sainz, R.; Trujillo Bueno, J.

    2014-03-01

    Line scattering polarization can be strongly affected by Rayleigh scattering at neutral hydrogen and Thomson scattering at free electrons. Often a depolarization of the continuum results, but the Doppler redistribution produced by the continuum scatterers, which are light (hence, fast), induces more complex interactions between the polarization in spectral lines and in the continuum. Here we formulate and solve the radiative transfer problem of scattering line polarization with non-coherent continuum scattering consistently. The problem is formulated within the spherical tensor representation of atomic and light polarization. The numerical method of solution is a generalization of the Accelerated Lambda Iteration that is applied to both the atomic system and the radiation field. We show that the redistribution of the spectral line radiation due to the non-coherence of the continuum scattering may modify the shape of the emergent fractional linear polarization patterns significantly, even yielding polarization signals above the continuum level in intrinsically unpolarizable lines.

  9. Continuum capture in the three-body problem

    SciTech Connect

    Sellin, I A

    1980-01-01

    The three-body problem, especially the problem of electron capture to the continuum in heavy particle collisions is reviewed. Major topics covered include: second born-induced asymmetry in electron capture to the continuum; historical context, links to other tests of atomic scattering theory; experiments characterizing the velocity distribution of ECC electrons; other atomic physics tests of high velocity Born expansions; atom capture; capture by positrons; and pion capture to the continuum. (GHT)

  10. Energetic costs of cellular computation.

    PubMed

    Mehta, Pankaj; Schwab, David J

    2012-10-30

    Cells often perform computations in order to respond to environmental cues. A simple example is the classic problem, first considered by Berg and Purcell, of determining the concentration of a chemical ligand in the surrounding media. On general theoretical grounds, it is expected that such computations require cells to consume energy. In particular, Landauer's principle states that energy must be consumed in order to erase the memory of past observations. Here, we explicitly calculate the energetic cost of steady-state computation of ligand concentration for a simple two-component cellular network that implements a noisy version of the Berg-Purcell strategy. We show that learning about external concentrations necessitates the breaking of detailed balance and consumption of energy, with greater learning requiring more energy. Our calculations suggest that the energetic costs of cellular computation may be an important constraint on networks designed to function in resource poor environments, such as the spore germination networks of bacteria.

  11. Energetic costs of cellular computation

    PubMed Central

    Mehta, Pankaj; Schwab, David J.

    2012-01-01

    Cells often perform computations in order to respond to environmental cues. A simple example is the classic problem, first considered by Berg and Purcell, of determining the concentration of a chemical ligand in the surrounding media. On general theoretical grounds, it is expected that such computations require cells to consume energy. In particular, Landauer’s principle states that energy must be consumed in order to erase the memory of past observations. Here, we explicitly calculate the energetic cost of steady-state computation of ligand concentration for a simple two-component cellular network that implements a noisy version of the Berg–Purcell strategy. We show that learning about external concentrations necessitates the breaking of detailed balance and consumption of energy, with greater learning requiring more energy. Our calculations suggest that the energetic costs of cellular computation may be an important constraint on networks designed to function in resource poor environments, such as the spore germination networks of bacteria. PMID:23045633

  12. Significance of decay mechanism into continuum in dynamical Wannier-Stark ladder

    SciTech Connect

    Nemoto, Yuya; Maeshima, Nobuya; Hino, Ken-ichi

    2013-12-04

    We examine the resonance structure of photodressed electron states of laser-driven Wannier-Stark ladder, namely, dynamic Wannier-Stark ladder, in terms of the excess density of states (DOS) closely related to a lifetime of the state of concern. It is revealed that the resonance structure in the strong laser-field region shows clear dependence on the ratio, η, of a Bloch-frequency to a laser frequency. As the laser strength increases, for η = 1, the excess DOS becomes involved with a lot of newly-growing resonance peaks. This result would be understood from the viewpoint of a Fano-like decay-mechanism caused by a multichannel continuum effect, in marked contrast to the cases of larger η’s; for η = 3, the excess DOS just is found to show a pronounced red-shift of a single dominant peak caused by a single-channel continuum effect.

  13. Lattice Boltzmann equation method for multiple immiscible continuum fluids

    NASA Astrophysics Data System (ADS)

    Spencer, T. J.; Halliday, I.; Care, C. M.

    2010-12-01

    This paper generalizes the two-component algorithm of Sec. , extending it, in Sec. , to describe N>2 mutually immiscible fluids in the isothermal continuum regime. Each fluid has an independent interfacial tension. While retaining all its computational advantages, we remove entirely the empiricism associated with contact behavior in our previous multiple immiscible fluid models [M. M. Dupin , Phys. Rev. E 73, 055701(R) (2006)10.1103/PhysRevE.73.055701; Med. Eng. Phys. 28, 13 (2006)10.1016/j.medengphy.2005.04.015] while solidifying the physical foundations. Moreover, the model relies upon a fluid-fluid segregation which is simpler, computationally faster, more free of artifacts (i.e., the interfacial microcurrent), and upon an interface-inducing force distribution which is analytic. The method is completely symmetric between any numbers of immiscible fluids and stable over a wide range of directly input interfacial tension. We present data on the steady-state properties of multiple interface model, which are in good agreement with theory [R. E. Johnson and S. S. Sadhal, Annu. Rev. Fluid Mech. 17, 289 (1985)10.1146/annurev.fl.17.010185.001445], specifically on the shapes of multidrop systems. Section is an analysis of the kinetic and continuum-scale descriptions of the underlying two-component lattice Boltzmann model for immiscible fluids, extendable to more than two immiscible fluids. This extension requires (i) the use of a more local kinetic equation perturbation which is (ii) free from a reliance on measured interfacial curvature. It should be noted that viewed simply as a two-component method, the continuum algorithm is inferior to our previous methods, reported by Lishchuk [Phys. Rev. E 67, 036701 (2003)]10.1103/PhysRevE.76.036701 and Halliday [Phys. Rev. E 76, 026708 (2007)]10.1103/PhysRevE.76.026708. Greater stability and parameter range is achieved in multiple drop simulations by using the forced multi-relaxation-time lattice Boltzmann method developed

  14. Continuum Fatigue Damage Modeling for Use in Life Extending Control

    NASA Technical Reports Server (NTRS)

    Lorenzo, Carl F.

    1994-01-01

    This paper develops a simplified continuum (continuous wrp to time, stress, etc.) fatigue damage model for use in Life Extending Controls (LEC) studies. The work is based on zero mean stress local strain cyclic damage modeling. New nonlinear explicit equation forms of cyclic damage in terms of stress amplitude are derived to facilitate the continuum modeling. Stress based continuum models are derived. Extension to plastic strain-strain rate models are also presented. Application of these models to LEC applications is considered. Progress toward a nonzero mean stress based continuum model is presented. Also, new nonlinear explicit equation forms in terms of stress amplitude are also derived for this case.

  15. Xtoys: Cellular automata on xwindows

    SciTech Connect

    Creutz, M.

    1995-08-15

    Xtoys is a collection of xwindow programs for demonstrating simulations of various statistical models. Included are xising, for the two dimensional Ising model, xpotts, for the q-state Potts model, xautomalab, for a fairly general class of totalistic cellular automata, xsand, for the Bak-Tang-Wiesenfield model of self organized criticality, and xfires, a simple forest fire simulation. The programs should compile on any machine supporting xwindows.

  16. Cellular Immune Mechanisms in Malaria.

    DTIC Science & Technology

    1980-08-31

    AD-A132 480 CELLULAR IMUNE MECHANISMS IN MALARIAIUI WASHINGTON I UNIV ST LOUIS 00 SCHOOL OF MEDICINE R P UACDERUOTT 31 AUG 8o 0AMI17-78-C-8012...lupus erythematosus (15). Subsequently, a variety of other disease states have been shown to be associated with an increased incidence of...lymphocytotoxic antibodies, including inflammatory bowel disease (16) and multiple sclerosis (17). We therefore also decided to investigate sera of adult Thai

  17. Oxidative Stress in Mammalian Cells Impinges on the Cysteines Redox State of Human XRCC3 Protein and on Its Cellular Localization

    PubMed Central

    Girard, Pierre-Marie; Graindorge, Dany; Smirnova, Violetta; Rigolet, Pascal; Francesconi, Stefania; Scanlon, Susan; Sage, Evelyne

    2013-01-01

    In vertebrates, XRCC3 is one of the five Rad51 paralogs that plays a central role in homologous recombination (HR), a key pathway for maintaining genomic stability. While investigating the potential role of human XRCC3 (hXRCC3) in the inhibition of DNA replication induced by UVA radiation, we discovered that hXRCC3 cysteine residues are oxidized following photosensitization by UVA. Our in silico prediction of the hXRCC3 structure suggests that 6 out of 8 cysteines are potentially accessible to the solvent and therefore potentially exposed to ROS attack. By non-reducing SDS-PAGE we show that many different oxidants induce hXRCC3 oxidation that is monitored in Chinese hamster ovarian (CHO) cells by increased electrophoretic mobility of the protein and in human cells by a slight decrease of its immunodetection. In both cell types, hXRCC3 oxidation was reversed in few minutes by cellular reducing systems. Depletion of intracellular glutathione prevents hXRCC3 oxidation only after UVA exposure though depending on the type of photosensitizer. In addition, we show that hXRCC3 expressed in CHO cells localizes both in the cytoplasm and in the nucleus. Mutating all hXRCC3 cysteines to serines (XR3/S protein) does not affect the subcellular localization of the protein even after exposure to camptothecin (CPT), which typically induces DNA damages that require HR to be repaired. However, cells expressing mutated XR3/S protein are sensitive to CPT, thus highlighting a defect of the mutant protein in HR. In marked contrast to CPT treatment, oxidative stress induces relocalization at the chromatin fraction of both wild-type and mutated protein, even though survival is not affected. Collectively, our results demonstrate that the DNA repair protein hXRCC3 is a target of ROS induced by environmental factors and raise the possibility that the redox environment might participate in regulating the HR pathway. PMID:24116071

  18. A Cellular Biophysics Textbook

    NASA Astrophysics Data System (ADS)

    Wilder, Alan Joseph

    2011-12-01

    In the past two decades, great advances have been made in understanding of the biophysical mechanisms of the protein machines that carry out the fundamental processes of the cell. It is now known that all major eukaryotic cellular processes require a complicated assemblage of proteins acting via a series of concerted motions. In order to grasp current understanding of cellular mechanisms, the new generation of cell biologists needs to be trained in the general characteristics of these cellular properties and the methods with which to study them. This cellular biophysics textbook, to be used in conjunction with the cellular biophysics course (MCB143) at UC-Davis, provides a great tool in the instruction of the new generation of cellular biologists. It provides a hierarchical view of the cell, from atoms to protein machines and explains in depth the mechanisms of cytoskeletal force generators as an example of these principles.

  19. Discrete and Continuum Elastic Properties of Interfaces.

    NASA Astrophysics Data System (ADS)

    Alber, Elliott Solomon

    The microstructure of defects in solids, e.g. interfaces, is heterogeneous and, consequently, so are the elastic properties. The complete anisotropic fourth-order tensors of both the discrete and the effective elastic moduli are defined in the interfacial region. To examine the meaning of discrete elastic constants, (i) a piecewise-continuous medium is considered where individual phases occupy the Voronoi polyhedra and have the elastic moduli associated with individual atoms, and (ii) the relationship between natural vibrations of the discrete systems and continuum waves is explored. Questions of local energy changes and stability are addressed in terms of continuum properties of the moduli, particularly positive definiteness and strong ellipticity. Comparisons between the atomistic results (exact effective moduli) and those for the continuum analog (bounds) establish the validity of the definition of elastic properties for heterogeneous structures at atomic scales and lead to criteria to assess the stability of a given microstructure. Homogenization of interfacial properties gives heterogeneous transition zone (or interphase) model. Interface phenomena in macrosystems (composites) and microsystems (grain boundaries) is explained by inner layer conditions between homogeneous bulk regions. Dynamical membrane and spring models of the imperfect interfaces are shown to be limiting models (similar to Reuss and Voigt bounding approximations in multiphase composite mechanics) for asymptotic expansions of stress and strain fields, respectively. Asymptotic expansion of both fields (in terms of small parameter h -thickness of the layer) produces mixed-type, exact approximation of the first order in h. Derived models of imperfect interface are used for investigation of interface waves in anisotropic bicrystals and for comparison with corresponding acoustical modes in phonon spectra. Localized interface waves are explained as general inhomogeneous plane waves in subsonic

  20. Discrete and continuum elastic properties of interfaces

    NASA Astrophysics Data System (ADS)

    Alber, Elliott Solomon

    1993-06-01

    The microstructure of defects in solids, e.g. interfaces, is heterogeneous and, consequently, so are the elastic properties. The complete anisotropic fourth-order tensors of both the discrete and the effective elastic moduli are defined in the interfacial region. To examine the meaning of discrete elastic constants, (1) a piecewise-continuous medium is considered where individual phases occupy the Voronoi polyhedra and have the elastic moduli associated with individual atoms, and (2) the relationship between natural vibrations of the discrete systems and continuum waves is explored. Questions of local energy changes and stability are addressed in terms of continuum properties of the moduli, particularly positive definiteness and strong ellipticity. Comparisons between the atomistic results (exact effective moduli) and those for the continuum analog (bounds) establish the validity of the definition of elastic properties for heterogeneous structures at atomic scales and lead to criteria to assess the stability of a given microstructure. Homogenization of interfacial properties gives heterogeneous transition zone (or interphase) model. Interface phenomena in macrosystems (composites) and microsystems (grain boundaries) is explained by inner layer conditions between homogeneous bulk regions. Dynamical membrane and spring models of the imperfect interfaces are shown to be limiting models (similar to Reuss and Voigt bounding approximations in multiphase composite mechanics) for asymptotic expansions of stress and strain fields, respectively. Asymptotic expansion of both fields (in terms of small parameter h-thickness of the layer) produces mixed-type, exact approximation of the first order in h. Derived models of imperfect interface are used for investigation of interface waves in anisotropic bicrystals and for comparison with corresponding acoustical modes in phonon spectra. Localized interface waves are explained as general inhomogeneous plane waves in subsonic

  1. Continuum and line emission in Cygnus A

    NASA Astrophysics Data System (ADS)

    Stockton, Alan; Ridgway, Susan E.; Lilly, Simon J.

    1994-08-01

    We present the results from (1) imaging observations of Cygnus A in five essentially line-free continuum bands with central wavelengths ranging from 0.34 to 2.1 microns. (2) imaging observations in five narrowband filters centered on the emission lines H beta(O III) lambda5007, H alpha(N II) lambda6583, and (S II) lambda lambda6716, 6731, and (3) deep spectroscopy covering the entire central region of Cyg A. We confirm that the featureless spectrum component is to be identified with the prominent double morphology at the center of Cyg A, but uncertainties in the distribution of the dust in this region tend to limit the accuracy with which we can determine its morphology and spectral-energy distribution (SED). From regions that appear to be least affected by obscuration, we find fv is approximately v-0.1 for this component. This SED could be consistent with free-free emission, a population of young stars, or a quasar continuum scattered by electrons, but probably not with a quasar continuum scattered by dust, which would be bluer. Our spectroscopy places an upper limit on the equivalent width of broad H beta that is well below that of typical quasars, showing that this flat-spectrum component (FSC) is almost certainly not dominated by scattered quasar radiation. Appeals to scattering by hot electrons to smear the scattered broad lines into invisibility appear to fail because the large density scale height of the electrons and the inefficiency of electron scattering should result in smoother and more extensive structure than we observe. Although the relative SED is consistent with free-free emission, the required amount of hot gas violates other observational constraints. At high angular resolution, the apparent morphology of the FSC is spiral-like. Although this impression may be partly due to obscuration, the distribution of the dust itself only serves to reinforce the spiral-like nature of the material with which it is associated. We conclude that the FSC is most

  2. Broadly continuously tunable slot waveguide quantum cascade lasers based on a continuum-to-continuum active region design

    SciTech Connect

    Meng, Bo; Zeng, Yong Quan; Liang, Guozhen; Hu, Xiao Nan; Rodriguez, Etienne; Wang, Qi Jie

    2015-09-14

    We report our progress in the development of broadly tunable single-mode slot waveguide quantum cascade lasers based on a continuum-to-continuum active region design. The electroluminescence spectrum of the continuum-to-continuum active region design has a full width at half maximum of 440 cm{sup −1} at center wavelength ∼10 μm at room temperature (300 K). Devices using the optimized slot waveguide structure and the continuum-to-continuum design can be tuned continuously with a lasing emission over 42 cm{sup −1}, from 9.74 to 10.16 μm, at room temperature by using only current tuning scheme, together with a side mode suppression ratio of above 15 dB within the whole tuning range.

  3. Calculating Free Energy Changes in Continuum Solvation Models

    SciTech Connect

    Ho, Junming; Ertem, Mehmed Z.

    2016-02-27

    We recently showed for a large dataset of pKas and reduction potentials that free energies calculated directly within the SMD continuum model compares very well with corresponding thermodynamic cycle calculations in both aqueous and organic solvents (Phys. Chem. Chem. Phys. 2015, 17, 2859). In this paper, we significantly expand the scope of our study to examine the suitability of this approach for the calculation of general solution phase kinetics and thermodynamics, in conjunction with several commonly used solvation models (SMDM062X, SMD-HF, CPCM-UAKS, and CPCM-UAHF) for a broad range of systems and reaction types. This includes cluster-continuum schemes for pKa calculations, as well as various neutral, radical and ionic reactions such as enolization, cycloaddition, hydrogen and chlorine atom transfer, and bimolecular SN2 and E2 reactions. On the basis of this benchmarking study, we conclude that the accuracies of both approaches are generally very similar – the mean errors for Gibbs free energy changes of neutral and ionic reactions are approximately 5 kJ mol-1 and 25 kJ mol-1 respectively. In systems where there are significant structural changes due to solvation, as is the case for certain ionic transition states and amino acids, the direct approach generally afford free energy changes that are in better agreement with experiment. The results indicate that when appropriate combinations of electronic structure methods are employed, the direct approach provides a reliable alternative to the thermodynamic cycle calculations of solution phase kinetics and thermodynamics across a broad range of organic reactions.

  4. Calculating Free Energy Changes in Continuum Solvation Models

    DOE PAGES

    Ho, Junming; Ertem, Mehmed Z.

    2016-02-27

    We recently showed for a large dataset of pKas and reduction potentials that free energies calculated directly within the SMD continuum model compares very well with corresponding thermodynamic cycle calculations in both aqueous and organic solvents (Phys. Chem. Chem. Phys. 2015, 17, 2859). In this paper, we significantly expand the scope of our study to examine the suitability of this approach for the calculation of general solution phase kinetics and thermodynamics, in conjunction with several commonly used solvation models (SMDM062X, SMD-HF, CPCM-UAKS, and CPCM-UAHF) for a broad range of systems and reaction types. This includes cluster-continuum schemes for pKa calculations,more » as well as various neutral, radical and ionic reactions such as enolization, cycloaddition, hydrogen and chlorine atom transfer, and bimolecular SN2 and E2 reactions. On the basis of this benchmarking study, we conclude that the accuracies of both approaches are generally very similar – the mean errors for Gibbs free energy changes of neutral and ionic reactions are approximately 5 kJ mol-1 and 25 kJ mol-1 respectively. In systems where there are significant structural changes due to solvation, as is the case for certain ionic transition states and amino acids, the direct approach generally afford free energy changes that are in better agreement with experiment. The results indicate that when appropriate combinations of electronic structure methods are employed, the direct approach provides a reliable alternative to the thermodynamic cycle calculations of solution phase kinetics and thermodynamics across a broad range of organic reactions.« less

  5. Continuum mechanics, stresses, currents and electrodynamics.

    PubMed

    Segev, Reuven

    2016-04-28

    The Eulerian approach to continuum mechanics does not make use of a body manifold. Rather, all fields considered are defined on the space, or the space-time, manifolds. Sections of some vector bundle represent generalized velocities which need not be associated with the motion of material points. Using the theories of de Rham currents and generalized sections of vector bundles, we formulate a weak theory of forces and stresses represented by vector-valued currents. Considering generalized velocities represented by differential forms and interpreting such a form as a generalized potential field, we present a weak formulation of pre-metric, p-form electrodynamics as a natural example of the foregoing theory. Finally, it is shown that the assumptions leading to p-form electrodynamics may be replaced by the condition that the force functional is continuous with respect to the flat topology of forms.

  6. Exercise therapy across the lung cancer continuum.

    PubMed

    Jones, Lee W; Eves, Neil D; Waner, Emily; Joy, Anil A

    2009-07-01

    A lung cancer diagnosis and associated therapeutic management are associated with unique and varying degrees of adverse physical/functional impairments that dramatically reduce patients' ability to tolerate exercise. Poor exercise capacity predisposes to increased susceptibility to other common age-related diseases, poor quality of life, and likely premature death. This article reviews the literature investigating the role of exercise as an adjunct therapy across the lung cancer continuum (ie, prevention to palliation). The current evidence suggests that exercise training is a safe and feasible adjunct therapy for patients with operable lung cancer both before and after pulmonary resection. Among patients with inoperable disease, feasibility and safety studies of carefully prescribed exercise training are warranted. Preliminary evidence in this area suggests that exercise therapy may be an important consideration in multidisciplinary management of patients diagnosed with lung cancer.

  7. The evolution of the quasar continuum

    NASA Technical Reports Server (NTRS)

    Elvis, M.

    1992-01-01

    We now have in hand a large data base of Roentgen Satellite (ROSAT), optical, and IR complementary data. We are in the process of obtaining a large amount of the International Ultraviolet Explorer (IUE) data for the same quasar sample. For our complementary sample at high redshifts, where the UV was redshifted into the optical, we have just had approved large amounts of observing time to cover the quasar continuum in the near-IR using the new Near-Infrared Camera and Multi-Object Spectrometer (NICMOS) array spectrographs. Ten micron, optical, and VLA radio, data also have approved time. An ISO US key program was approved to extend this work into the far-IR, and the launch of ASTRO-D (early in 1993) promises to extend it to higher energy X-rays.

  8. Defining Health Across the Cancer Continuum

    PubMed Central

    Wallace, Audrey S; Everett, Ashlyn S; Dover, Laura; McDonald, Andrew; Kropp, Lauren

    2017-01-01

    Health is not defined by the absence of disease or suffering, but by response to a series of life events that can markedly alter the quality and quantity of life. Patients with cancer experience significant but dynamic physical, psychosocial, and financial challenges. With the increasing number of patients with early stage cancers transitioning to survivorship, there is a critical need to address health promotion and overall well-being. For those with advanced cancer, discussion about prognosis and early integration of palliative care can have a profound impact on the quality of life. Effective communication between healthcare providers and patients is important in aligning treatment recommendations with patient goals and preferences throughout cancer therapy. This review provides a dynamic definition of health and proposes actionable guidelines for health promotion at any point along the cancer continuum: survivorship after early cancer or when goals of care transition to improve quality at the end of life. PMID:28357161

  9. Continuum modeling of cooperative traffic flow dynamics

    NASA Astrophysics Data System (ADS)

    Ngoduy, D.; Hoogendoorn, S. P.; Liu, R.

    2009-07-01

    This paper presents a continuum approach to model the dynamics of cooperative traffic flow. The cooperation is defined in our model in a way that the equipped vehicle can issue and receive a warning massage when there is downstream congestion. Upon receiving the warning massage, the (up-stream) equipped vehicle will adapt the current desired speed to the speed at the congested area in order to avoid sharp deceleration when approaching the congestion. To model the dynamics of such cooperative systems, a multi-class gas-kinetic theory is extended to capture the adaptation of the desired speed of the equipped vehicle to the speed at the downstream congested traffic. Numerical simulations are carried out to show the influence of the penetration rate of the equipped vehicles on traffic flow stability and capacity in a freeway.

  10. Continuum-kinetic approach to sheath simulations

    NASA Astrophysics Data System (ADS)

    Cagas, Petr; Hakim, Ammar; Srinivasan, Bhuvana

    2016-10-01

    Simulations of sheaths are performed using a novel continuum-kinetic model with collisions including ionization/recombination. A discontinuous Galerkin method is used to directly solve the Boltzmann-Poisson system to obtain a particle distribution function. Direct discretization of the distribution function has advantages of being noise-free compared to particle-in-cell methods. The distribution function, which is available at each node of the configuration space, can be readily used to calculate the collision integrals in order to get ionization and recombination operators. Analytical models are used to obtain the cross-sections as a function of energy. Results will be presented incorporating surface physics with a classical sheath in Hall thruster-relevant geometry. This work was sponsored by the Air Force Office of Scientific Research under Grant Number FA9550-15-1-0193.

  11. Radio Continuum Emission from FS CMa Stars

    NASA Astrophysics Data System (ADS)

    Rodríguez, L. F.; Báez-Rubio, A.; Miroshnichenko, A. S.

    2012-04-01

    The FS CMa stars exhibit bright optical emission-line spectra and strong IR excesses. Very little is known of their radio characteristics. We analyzed archive Very Large Array data to search for radio continuum emission in a sample of them. There are good quality data for seven of the ~40 known FS CMa stars. Of these seven stars, five turn out to have associated radio emission. Two of these stars, CI Cam and MWC 300, have been previously reported in the literature as radio emitters. We present and briefly discuss the radio detection of the other three sources: FS CMa (the prototype of the class), AS 381, and MWC 922. The radio emission is most probably of a free-free nature but additional observations are required to better characterize it.

  12. The hurricane-flood-landslide continuum

    USGS Publications Warehouse

    Negri, A.J.; Burkardt, N.; Golden, J.H.; Halverson, J.B.; Huffman, G.J.; Larsen, M.C.; McGinley, J.A.; Updike, R.G.; Verdin, J.P.; Wieczorek, G.F.

    2005-01-01

    In August 2004, representatives from NOAA, NASA, the US Geological Survey (USGS), as well as other government agencies and academic institutions convened in San Juan, Puerto Rico, at a workshop to discuss a proposed research project called the Hurricane-Flood-Landslide Continuum (HFLC). The purpose of the HFLC is to develop and integrate the multidisciplinary tools needed to issue regional guidance products for floods and landslide associated with major tropical rain systems with sufficient lead time that local emergency managers can notify vulnerable populations and protect infrastructure. The workshop sought to initiate discussion among these agencies about their highly complementary capabilities, and to establish a framework to leverage the strengths of each agency. Once a prototype system is developed, it could be adapted for use in regions that have a high frequency of tropical disturbances.

  13. Arf and p53 act as guardians of a quiescent cellular state by protecting against immortalization of cells with stable genomes.

    PubMed

    Osawa, Tomoyuki; Atsumi, Yuko; Sugihara, Eiji; Saya, Hideyuki; Kanno, Masamoto; Tashiro, Fumio; Masutani, Mitsuko; Yoshioka, Ken-Ichi

    2013-03-01

    Normal cells undergo a growth-arrested status that is produced by p53-dependent down-regulation of histone H2AX. Immortality is developed after abrogation of the H2AX-diminished state, which is associated with genomic instability (often with tetraploidy) and the induction of mutations in either the Arf or p53 gene. However, the role of Arf in control of H2AX expression and genome stability is still unclear. Here, we show that both Arf and p53 are required for the down-regulation of H2AX and formation of the growth-arrested state. Wild-type (WT) mouse embryonic fibroblasts (MEFs) subjected to tetraploidization with DNA lesions did not undergo mitotic catastrophe-associated cell death and stayed in a growth-arrested state, until immortality was attained with mutations in the Arf/p53 module and recovery of H2AX expression. Whereas tetraploidization was essential for immortalization of WT MEFs, this event was not required for immortalization of MEFs containing mutations in Arf/p53 and these cells still underwent mitotic catastrophe-associated cell death. Thus, WT MEFs are protected from immortalization with genome stability, which is abrogated with tetraploidization and mutation of either Arf or p53.

  14. In vivo monitoring of cellular energy metabolism using SoNar, a highly responsive sensor for NAD(+)/NADH redox state.

    PubMed

    Zhao, Yuzheng; Wang, Aoxue; Zou, Yejun; Su, Ni; Loscalzo, Joseph; Yang, Yi

    2016-08-01

    NADH and its oxidized form NAD(+) have a central role in energy metabolism, and their concentrations are often considered to be among the most important readouts of metabolic state. Here, we present a detailed protocol to image and monitor NAD(+)/NADH redox state in living cells and in vivo using a highly responsive, genetically encoded fluorescent sensor known as SoNar (sensor of NAD(H) redox). The chimeric SoNar protein was initially developed by inserting circularly permuted yellow fluorescent protein (cpYFP) into the NADH-binding domain of Rex protein from Thermus aquaticus (T-Rex). It functions by binding to either NAD(+) or NADH, thus inducing protein conformational changes that affect its fluorescent properties. We first describe steps for how to establish SoNar-expressing cells, and then discuss how to use the system to quantify the intracellular redox state. This approach is sensitive, accurate, simple and able to report subtle perturbations of various pathways of energy metabolism in real time. We also detail the application of SoNar to high-throughput chemical screening of candidate compounds targeting cell metabolism in a microplate-reader-based assay, along with in vivo fluorescence imaging of tumor xenografts expressing SoNar in mice. Typically, the approximate time frame for fluorescence imaging of SoNar is 30 min for living cells and 60 min for living mice. For high-throughput chemical screening in a 384-well-plate assay, the whole procedure generally takes no longer than 60 min to assess the effects of 380 compounds on cell metabolism.

  15. Testing Continuum and Non-Continuum Descriptions in High Speed Flows

    DTIC Science & Technology

    2005-07-13

    fundamentally different in the two solution approaches. In the continuum approach the Navier-Stokes equations consist of source terms of reaction...model match those obtained from the direct solution of the Boltzmann equation [14]. For the case of the Mach 1.2 Argon shock structure, (figure not...study provides excellent match with the DSMC and direct solutions of the Boltzmann equation [14]. Fig. 2 shows the effect of the variation of the

  16. A geohydrologic continuum theory for the spatial and temporal evolution of marsh-estuarine ecosystems

    NASA Astrophysics Data System (ADS)

    Dame, R.; Childers, D.; Koepfler, E.

    Using ecosystem development theory and the River Continuum Concept as starting points, we present a new holistic theory to explain the spatial and temporal behaviour of marsh-estuarine ecosystems Along the marine-estuarine-freshwater gradient in response to sea-level rise. In this theory, a geohydrologic continuum represented by tidal channel provides a predictable physical model of how the marsh-estuarine ecosystem adapts until there is a change of state. North Inlet, South Carolina is used as an example of this marsh-estuarine continuum. Mature creeks are at the ocean-estuary interface and are strongly influenced by marine factors. Further into the estuary, less and less mature creeks are encountered which are dominated by smaller scale spatial and temporal controls such as oyster reefs. Immature or ephemeral creeks import both particulate and dissolved materials, while mature creeks export both forms of nutrients. Mid-aged creeks appear to take up particulate materials and release dissolved constituents. Ultimately, the continuum reaches the fresh-saltwater interface where a very young estuarine ecosystem invades a more mature type, under the influence of disturbance. Our new explanation satisfies most criteria for a good theory by being internally consistent to the location specified, generating testable hypothesis, not blindly adapting existing theories, agreeing with known properties of the ecosystem described and by generating new invigorating discussion within the scientific community.

  17. An efficient collision limiter Monte Carlo simulation for hypersonic near-continuum flows

    NASA Astrophysics Data System (ADS)

    Liang, Jie; Li, Zhihui; Li, Xuguo; Fang, Boqiang Du Ming

    2016-11-01

    The implementation of a collision limiter DSMC-based hybrid approach is presented to simulate hypersonic near-continuum flow. The continuum breakdown parameters based on gradient-length local Knudsen number are characterized different regions of the flowfield. The collision limiter is used in continuum inviscid regions with large time step and cell size. Local density gradient-based dynamic adaptation of collision and sampling cells refinement is employed in high gradient regions including strong shocks and boundary layer near surface. A variable time step scheme is adopted to make sure a more uniform distribution of model particles per collision cell throughout the computational domain, with a constant ratio of local time step interval to particle weights to avoid particles cloned or destroyed when crossing interface from cell to cell. The surface pressure and friction coefficients of hypersonic reentry flow for a blunt capsule are computed in different conditions and compared with benchmark case in transitional regime to examine the efficiency and accuracy. The aerodynamic characteristics of a wave rider shape with sharp leading edge are simulated in the test state for hypersonic near-continuum. The computed aerodynamic coefficients have good agreements with experimental data in low density wind tunnel of CARDC and have less computational expense.

  18. DUSP11 activity on triphosphorylated transcripts promotes Argonaute association with noncanonical viral microRNAs and regulates steady-state levels of cellular noncoding RNAs

    PubMed Central

    Burke, James M.; Kincaid, Rodney P.; Nottingham, Ryan M.; Lambowitz, Alan M.; Sullivan, Christopher S.

    2016-01-01

    RNA silencing is a conserved eukaryotic gene expression regulatory mechanism mediated by small RNAs. In Caenorhabditis elegans, the accumulation of a distinct class of siRNAs synthesized by an RNA-dependent RNA polymerase (RdRP) requires the PIR-1 phosphatase. However, the function of PIR-1 in RNAi has remained unclear. Since mammals lack an analogous siRNA biogenesis pathway, an RNA silencing role for the mammalian PIR-1 homolog (dual specificity phosphatase 11 [DUSP11]) was unexpected. Here, we show that the RNA triphosphatase activity of DUSP11 promotes the RNA silencing activity of viral microRNAs (miRNAs) derived from RNA polymerase III (RNAP III) transcribed precursors. Our results demonstrate that DUSP11 converts the 5′ triphosphate of miRNA precursors to a 5′ monophosphate, promoting loading of derivative 5p miRNAs into Argonaute proteins via a Dicer-coupled 5′ monophosphate-dependent strand selection mechanism. This mechanistic insight supports a likely shared function for PIR-1 in C. elegans. Furthermore, we show that DUSP11 modulates the 5′ end phosphate group and/or steady-state level of several host RNAP III transcripts, including vault RNAs and Alu transcripts. This study shows that steady-state levels of select noncoding RNAs are regulated by DUSP11 and defines a previously unknown portal for small RNA-mediated silencing in mammals, revealing that DUSP11-dependent RNA silencing activities are shared among diverse metazoans. PMID:27798849

  19. Continuum Thinking and the Contexts of Personal Information Management

    ERIC Educational Resources Information Center

    Huvila, Isto; Eriksen, Jon; Häusner, Eva-Maria; Jansson, Ina-Maria

    2014-01-01

    Introduction: Recent personal information management literature has underlined the significance of the contextuality of personal information and its use. The present article discusses the applicability of the records continuum model and its generalisation, continuum thinking, as a theoretical framework for explicating the overlap and evolution of…

  20. Teaching Continuum Mechanics in a Mechanical Engineering Program

    ERIC Educational Resources Information Center

    Liu, Yucheng

    2011-01-01

    This paper introduces a graduate course, continuum mechanics, which is designed for and taught to graduate students in a Mechanical Engineering (ME) program. The significance of continuum mechanics in engineering education is demonstrated and the course structure is described. Methods used in teaching this course such as topics, class…

  1. An Optimization-based Atomistic-to-Continuum Coupling Method

    SciTech Connect

    Olson, Derek; Bochev, Pavel B.; Luskin, Mitchell; Shapeev, Alexander V.

    2014-08-21

    In this paper, we present a new optimization-based method for atomistic-to-continuum (AtC) coupling. The main idea is to cast the latter as a constrained optimization problem with virtual Dirichlet controls on the interfaces between the atomistic and continuum subdomains. The optimization objective is to minimize the error between the atomistic and continuum solutions on the overlap between the two subdomains, while the atomistic and continuum force balance equations provide the constraints. Separation, rather then blending of the atomistic and continuum problems, and their subsequent use as constraints in the optimization problem distinguishes our approach from the existing AtC formulations. Finally, we present and analyze the method in the context of a one-dimensional chain of atoms modeled using a linearized two-body potential with next-nearest neighbor interactions.

  2. Solar radio continuum storms and a breathing magnetic field model

    NASA Technical Reports Server (NTRS)

    1975-01-01

    Radio noise continuum emissions observed in metric and decametric wave frequencies are, in general, associated with actively varying sunspot groups accompanied by the S-component of microwave radio emissions. These continuum emission sources, often called type I storm sources, are often associated with type III burst storm activity from metric to hectometric wave frequencies. This storm activity is, therefore, closely connected with the development of these continuum emission sources. It is shown that the S-component emission in microwave frequencies generally precedes, by several days, the emission of these noise continuum storms of lower frequencies. In order for these storms to develop, the growth of sunspot groups into complex types is very important in addition to the increase of the average magnetic field intensity and area of these groups. After giving a review on the theory of these noise continuum storm emissions, a model is briefly considered to explain the relation of the emissions to the storms.

  3. An Optimization-based Atomistic-to-Continuum Coupling Method

    DOE PAGES

    Olson, Derek; Bochev, Pavel B.; Luskin, Mitchell; ...

    2014-08-21

    In this paper, we present a new optimization-based method for atomistic-to-continuum (AtC) coupling. The main idea is to cast the latter as a constrained optimization problem with virtual Dirichlet controls on the interfaces between the atomistic and continuum subdomains. The optimization objective is to minimize the error between the atomistic and continuum solutions on the overlap between the two subdomains, while the atomistic and continuum force balance equations provide the constraints. Separation, rather then blending of the atomistic and continuum problems, and their subsequent use as constraints in the optimization problem distinguishes our approach from the existing AtC formulations. Finally,more » we present and analyze the method in the context of a one-dimensional chain of atoms modeled using a linearized two-body potential with next-nearest neighbor interactions.« less

  4. On the role of self-adjointness in the continuum formulation of topological quantum phases

    NASA Astrophysics Data System (ADS)

    Tanhayi Ahari, Mostafa; Ortiz, Gerardo; Seradjeh, Babak

    2016-11-01

    Topological quantum phases of matter are characterized by an intimate relationship between the Hamiltonian dynamics away from the edges and the appearance of bound states localized at the edges of the system. Elucidating this correspondence in the continuum formulation of topological phases, even in the simplest case of a one-dimensional system, touches upon fundamental concepts and methods in quantum mechanics that are not commonly discussed in textbooks, in particular the self-adjoint extensions of a Hermitian operator. We show how such topological bound states can be derived in a prototypical one-dimensional system. Along the way, we provide a pedagogical exposition of the self-adjoint extension method as well as the role of symmetries in correctly formulating the continuum, field-theory description of topological matter with boundaries. Moreover, we show that self-adjoint extensions can be characterized generally in terms of a conserved local current associated with the self-adjoint operator.

  5. Continuum and molecular-dynamics simulation of nanodroplet collisions.

    PubMed

    Bardia, Raunak; Liang, Zhi; Keblinski, Pawel; Trujillo, Mario F

    2016-05-01

    The extent to which the continuum treatment holds in binary droplet collisions is examined in the present work by using a continuum-based implicit surface capturing strategy (volume-of-fluid coupled to Navier-Stokes) and a molecular dynamics methodology. The droplet pairs are arranged in a head-on-collision configuration with an initial separation distance of 5.3 nm and a velocity of 3 ms^{-1}. The size of droplets ranges from 10-50 nm. Inspecting the results, the collision process can be described as consisting of two periods: a preimpact phase that ends with the initial contact of both droplets, and a postimpact phase characterized by the merging, deformation, and coalescence of the droplets. The largest difference between the continuum and molecular dynamics (MD) predictions is observed in the preimpact period, where the continuum-based viscous and pressure drag forces significantly overestimate the MD predictions. Due to large value of Knudsen number in the gas (Kn_{gas}=1.972), this behavior is expected. Besides the differences between continuum and MD, it is also observed that the continuum simulations do not converge for the set of grid sizes considered. This is shown to be directly related to the initial velocity profile and the minute size of the nanodroplets. For instance, for micrometer-size droplets, this numerical sensitivity is not an issue. During the postimpact period, both MD and continuum-based simulations are strikingly similar, with only a moderate difference in the peak kinetic energy recorded during the collision process. With values for the Knudsen number in the liquid (Kn_{liquid}=0.01 for D=36nm) much closer to the continuum regime, this behavior is expected. The 50 nm droplet case is sufficiently large to be predicted reasonably well with the continuum treatment. However, for droplets smaller than approximately 36 nm, the departure from continuum behavior becomes noticeably pronounced, and becomes drastically different for the 10 nm

  6. Continuum mechanics for quantum many-body systems

    NASA Astrophysics Data System (ADS)

    Vignale, Giovanni; Tao, Jianmin; Gao, Xianlong; Tokatly, Ilya

    2010-03-01

    Continuum mechanics is a theory of the dynamics of classical liquids and solids in which the state of the body is described by a small set of collective, such as density and current. A similar description is possible for quantum many-body systems, and indeed its existence is guaranteed by the basic theorems of time-dependent current density functional theory. In this paper we show how the exact Heisenberg equation of motion for the current density of a many-body system can be closed by expressing the quantum stress tensor as a functional of the current density. Several approximation schemes for this functional are discussed. The simplest scheme allows us to bypass the solution of the time-dependent Schr"odinger equation, resulting in an equation of motion for the current that requires only ground-state properties as an input. We illustrate the formalism by applying it to the calculation of excitation energies in simple one- and two-electron systems.

  7. MIRO Continuum Calibration for Asteroid Mode

    NASA Technical Reports Server (NTRS)

    Lee, Seungwon

    2011-01-01

    MIRO (Microwave Instrument for the Rosetta Orbiter) is a lightweight, uncooled, dual-frequency heterodyne radiometer. The MIRO encountered asteroid Steins in 2008, and during the flyby, MIRO used the Asteroid Mode to measure the emission spectrum of Steins. The Asteroid Mode is one of the seven modes of the MIRO operation, and is designed to increase the length of time that a spectral line is in the MIRO pass-band during a flyby of an object. This software is used to calibrate the continuum measurement of Steins emission power during the asteroid flyby. The MIRO raw measurement data need to be calibrated in order to obtain physically meaningful data. This software calibrates the MIRO raw measurements in digital units to the brightness temperature in Kelvin. The software uses two calibration sequences that are included in the Asteroid Mode. One sequence is at the beginning of the mode, and the other at the end. The first six frames contain the measurement of a cold calibration target, while the last six frames measure a warm calibration target. The targets have known temperatures and are used to provide reference power and gain, which can be used to convert MIRO measurements into brightness temperature. The software was developed to calibrate MIRO continuum measurements from Asteroid Mode. The software determines the relationship between the raw digital unit measured by MIRO and the equivalent brightness temperature by analyzing data from calibration frames. The found relationship is applied to non-calibration frames, which are the measurements of an object of interest such as asteroids and other planetary objects that MIRO encounters during its operation. This software characterizes the gain fluctuations statistically and determines which method to estimate gain between calibration frames. For example, if the fluctuation is lower than a statistically significant level, the averaging method is used to estimate the gain between the calibration frames. If the

  8. Plasmonic Nanostructured Cellular Automata

    NASA Astrophysics Data System (ADS)

    Alkhazraji, Emad; Ghalib, A.; Manzoor, K.; Alsunaidi, M. A.

    2017-03-01

    In this work, we have investigated the scattering plasmonic resonance characteristics of silver nanospheres with a geometrical distribution that is modelled by Cellular Automata using time-domain numerical analysis. Cellular Automata are discrete mathematical structures that model different natural phenomena. Two binary one-dimensional Cellular Automata rules are considered to model the nanostructure, namely rule 30 and rule 33. The analysis produces three-dimensional scattering profiles of the entire plasmonic nanostructure. For the Cellular Automaton rule 33, the introduction of more Cellular Automata generations resulted only in slight red and blue shifts in the plasmonic modes with respect to the first generation. On the other hand, while rule 30 introduced significant red shifts in the resonance peaks at early generations, at later generations however, a peculiar effect is witnessed in the scattering profile as new peaks emerge as a feature of the overall Cellular Automata structure rather than the sum of the smaller parts that compose it. We strongly believe that these features that emerge as a result adopting the different 256 Cellular Automata rules as configuration models of nanostructures in different applications and systems might possess a great potential in enhancing their capability, sensitivity, efficiency, and power utilization.

  9. Altering the Mitochondrial Fatty Acid Synthesis (mtFASII) Pathway Modulates Cellular Metabolic States and Bioactive Lipid Profiles as Revealed by Metabolomic Profiling

    PubMed Central

    Clay, Hayley B.; Parl, Angelika K.; Mitchell, Sabrina L.; Singh, Larry; Bell, Lauren N.; Murdock, Deborah G.

    2016-01-01

    Despite the presence of a cytosolic fatty acid synthesis pathway, mitochondria have retained their own means of creating fatty acids via the mitochondrial fatty acid synthesis (mtFASII) pathway. The reason for its conservation has not yet been elucidated. Therefore, to better understand the role of mtFASII in the cell, we used thin layer chromatography to characterize the contribution of the mtFASII pathway to the fatty acid composition of selected mitochondrial lipids. Next, we performed metabolomic analysis on HeLa cells in which the mtFASII pathway was either hypofunctional (through knockdown of mitochondrial acyl carrier protein, ACP) or hyperfunctional (through overexpression of mitochondrial enoyl-CoA reductase, MECR). Our results indicate that the mtFASII pathway contributes little to the fatty acid composition of mitochondrial lipid species examined. Additionally, loss of mtFASII function results in changes in biochemical pathways suggesting alterations in glucose utilization and redox state. Interestingly, levels of bioactive lipids, including lysophospholipids and sphingolipids, directly correlate with mtFASII function, indicating that mtFASII may be involved in the regulation of bioactive lipid levels. Regulation of bioactive lipid levels by mtFASII implicates the pathway as a mediator of intracellular signaling. PMID:26963735

  10. Cellular Reflectarray Antenna

    NASA Technical Reports Server (NTRS)

    Romanofsky, Robert R.

    2010-01-01

    The cellular reflectarray antenna is intended to replace conventional parabolic reflectors that must be physically aligned with a particular satellite in geostationary orbit. These arrays are designed for specified geographical locations, defined by latitude and longitude, each called a "cell." A particular cell occupies nominally 1,500 square miles (3,885 sq. km), but this varies according to latitude and longitude. The cellular reflectarray antenna designed for a particular cell is simply positioned to align with magnetic North, and the antenna surface is level (parallel to the ground). A given cellular reflectarray antenna will not operate in any other cell.

  11. Adiabatic passage and dissociation controlled by interference of two laser-induced continuum structures

    SciTech Connect

    Popov, A. K.; Kimberg, V. V.; George, Thomas F.

    2003-09-01

    We have developed a theory of three-pulse coherent control of photochemical processes. It is based on adiabatic passage and quantum coherence and interference attributed to the lower-lying dissociation continuum and excited upper discrete states, which are otherwise not connected to the ground state by one-photon transitions. Opportunities offered by the proposed scheme are demonstrated through extensive numerical simulations with the aid of a model relevant to typical experiments. The opportunities for manipulating the distribution of the population among discrete and continuous states with any necessary ratio by the end of the pulses are demonstrated.

  12. CONTINUUM CONTRIBUTIONS TO THE SDO/AIA PASSBANDS DURING SOLAR FLARES

    SciTech Connect

    Milligan, Ryan O.; McElroy, Sarah A.

    2013-11-01

    Data from the Multiple EUV Grating Spectrograph component of the Extreme-ultraviolet Variability Experiment (EVE) on board the Solar Dynamics Observatory (SDO) were used to quantify the contribution of continuum emission to each of the extreme ultraviolet (EUV) channels of the Atmospheric Imaging Assembly (AIA), also on SDO, during an X-class solar flare that occurred on 2011 February 15. Both the pre-flare-subtracted EVE spectra and fits to the associated free-free continuum were convolved with the AIA response functions of the seven EUV passbands at 10 s cadence throughout the course of the flare. It was found that 10%-25% of the total emission in the 94 Å, 131 Å, 193 Å, and 335 Å passbands throughout the main phase of the flare was due to free-free emission. Reliable measurements could not be made for the 171 Å channel, while the continuum contribution to the 304 Å channel was negligible due to the presence of the strong He II emission line. Up to 50% of the emission in the 211 Å channel was found to be due to free-free emission around the peak of the flare, while an additional 20% was due to the recombination continuum of He II. The analysis was extended to a number of M- and X-class flares and it was found that the level of free-free emission contributing to both the 171 Å and 211 Å passbands increased with increasing GOES class. These results suggest that the amount of continuum emission that contributes to AIA observations during flares is more significant than stated in previous studies which used synthetic, rather than observed, spectra. These findings highlight the importance of spectroscopic observations carried out in conjunction with those from imaging instruments so that the data are interpreted correctly.

  13. Determining decision thresholds and evaluating indicators when conservation status is measured as a continuum.

    PubMed

    Connors, B M; Cooper, A B

    2014-12-01

    Categorization of the status of populations, species, and ecosystems underpins most conservation activities. Status is often based on how a system's current indicator value (e.g., change in abundance) relates to some threshold of conservation concern. Receiver operating characteristic (ROC) curves can be used to quantify the statistical reliability of indicators of conservation status and evaluate trade-offs between correct (true positive) and incorrect (false positive) classifications across a range of decision thresholds. However, ROC curves assume a discrete, binary relationship between an indicator and the conservation status it is meant to track, which is a simplification of the more realistic continuum of conservation status, and may limit the applicability of ROC curves in conservation science. We describe a modified ROC curve that treats conservation status as a continuum rather than a discrete state. We explored the influence of this continuum and typical sources of variation in abundance that can lead to classification errors (i.e., random variation and measurement error) on the true and false positive rates corresponding to varying decision thresholds and the reliability of change in abundance as an indicator of conservation status, respectively. We applied our modified ROC approach to an indicator of endangerment in Pacific salmon (Oncorhynchus nerka) (i.e., percent decline in geometric mean abundance) and an indicator of marine ecosystem structure and function (i.e., detritivore biomass). Failure to treat conservation status as a continuum when choosing thresholds for indicators resulted in the misidentification of trade-offs between true and false positive rates and the overestimation of an indicator's reliability. We argue for treating conservation status as a continuum when ROC curves are used to evaluate decision thresholds in indicators for the assessment of conservation status.

  14. Continuum regularization of quantum field theory

    SciTech Connect

    Bern, Z.

    1986-04-01

    Possible nonperturbative continuum regularization schemes for quantum field theory are discussed which are based upon the Langevin equation of Parisi and Wu. Breit, Gupta and Zaks made the first proposal for new gauge invariant nonperturbative regularization. The scheme is based on smearing in the ''fifth-time'' of the Langevin equation. An analysis of their stochastic regularization scheme for the case of scalar electrodynamics with the standard covariant gauge fixing is given. Their scheme is shown to preserve the masslessness of the photon and the tensor structure of the photon vacuum polarization at the one-loop level. Although stochastic regularization is viable in one-loop electrodynamics, two difficulties arise which, in general, ruins the scheme. One problem is that the superficial quadratic divergences force a bottomless action for the noise. Another difficulty is that stochastic regularization by fifth-time smearing is incompatible with Zwanziger's gauge fixing, which is the only known nonperturbaive covariant gauge fixing for nonabelian gauge theories. Finally, a successful covariant derivative scheme is discussed which avoids the difficulties encountered with the earlier stochastic regularization by fifth-time smearing. For QCD the regularized formulation is manifestly Lorentz invariant, gauge invariant, ghost free and finite to all orders. A vanishing gluon mass is explicitly verified at one loop. The method is designed to respect relevant symmetries, and is expected to provide suitable regularization for any theory of interest. Hopefully, the scheme will lend itself to nonperturbative analysis. 44 refs., 16 figs.

  15. Continuum Edge Gyrokinetic Theory and Simulations

    SciTech Connect

    Xu, X Q; Xiong, Z; Dorr, M R; Hittinger, J A; Bodi, K; Candy, J; Cohen, B I; Cohen, R H; Colella, P; Kerbel, G D; Krasheninnikov, S; Nevins, W M; Qin, H; Rognlien, T D; Snyder, P B; Umansky, M V

    2007-01-09

    The following results are presented from the development and application of TEMPEST, a fully nonlinear (full-f) five dimensional (3d2v) gyrokinetic continuum edge-plasma code. (1) As a test of the interaction of collisions and parallel streaming, TEMPEST is compared with published analytic and numerical results for endloss of particles confined by combined electrostatic and magnetic wells. Good agreement is found over a wide range of collisionality, confining potential, and mirror ratio; and the required velocity space resolution is modest. (2) In a large-aspect-ratio circular geometry, excellent agreement is found for a neoclassical equilibrium with parallel ion flow in the banana regime with zero temperature gradient and radial electric field. (3) The four-dimensional (2d2v) version of the code produces the first self-consistent simulation results of collisionless damping of geodesic acoustic modes and zonal flow (Rosenbluth-Hinton residual) with Boltzmann electrons using a full-f code. The electric field is also found to agree with the standard neoclassical expression for steep density and ion temperature gradients in the banana regime. In divertor geometry, it is found that the endloss of particles and energy induces parallel flow stronger than the core neoclassical predictions in the SOL. (5) Our 5D gyrokinetic formulation yields a set of nonlinear electrostatic gyrokinetic equations that are for both neoclassical and turbulence simulations.

  16. Wavelet formulation of the polarizable continuum model.

    PubMed

    Weijo, Ville; Randrianarivony, Maharavo; Harbrecht, Helmut; Frediani, Luca

    2010-05-01

    The first implementation of a wavelet discretization of the Integral Equation Formalism (IEF) for the Polarizable Continuum Model (PCM) is presented here. The method is based on the application of a general purpose wavelet solver on the cavity boundary to solve the integral equations of the IEF-PCM problem. Wavelet methods provide attractive properties for the solution of the electrostatic problem at the cavity boundary: the system matrix is highly sparse and iterative solution schemes can be applied efficiently; the accuracy of the solver can be increased systematically and arbitrarily; for a given system, discretization error accuracy is achieved at a computational expense that scales linearly with the number of unknowns. The scaling of the computational time with the number of atoms N is formally quadratic but a N(1.5) scaling has been observed in practice. The current bottleneck is the evaluation of the potential integrals at the cavity boundary which scales linearly with the system size. To reduce this overhead, interpolation of the potential integrals on the cavity surface has been successfully used.

  17. Dynamical Response of Continuum Regime Langmuir Probe

    NASA Astrophysics Data System (ADS)

    Rappaport, H. L.

    2009-11-01

    Probe dynamic response is sometimes used as a way to increase the amount of information obtained from Langmuir probes [1]. In this poster, the effects of frequency dependent probe capacitance and coupling of probe fields to damped Langmuir waves and damped ion acoustic waves are considered. In the continuum regime, with small Debye length to spherical probe radius ratio, the probe DC current vs. voltage characteristic displays a hard saturation at sufficiently large probe potential [2]. In this regime, the sheath thickness varies little with the applied voltage although the plasma response can still be measured. A goal of the present investigation is to show that the probe dynamical response is richer as a result of modulation of sheath thickness or shielding particularly in the larger Debye length to probe radius ratio regime. Inertia inhibits ion response at sufficiently high frequency and deviation from the DC characteristic is shown.[4pt] [1] D. N. Walker, R.F. Fernsler, D.D. Blackwell, and W.E. Amatucci, Phys. Plasmas 15, 123506 (2008).[0pt] [2] E. Baum and R.L. Chapkis, AIAA J. 8, 1073 (1970).

  18. Second law violations, continuum mechanics, and permeability

    NASA Astrophysics Data System (ADS)

    Ostoja-Starzewski, Martin

    2016-03-01

    The violations of the second law are relevant as the length and/or time scales become very small. The second law then needs to be replaced by the fluctuation theorem and mathematically, the irreversible entropy is a submartingale. First, we discuss the consequences of these results for the axioms of continuum mechanics, arguing in favor of a framework relying on stochastic functionals of energy and entropy. We next determine a Lyapunov function for diffusion-type problems governed by stochastic rather than deterministic functionals of internal energy and entropy, where the random field coefficients of diffusion are not required to satisfy the positive definiteness everywhere. Next, a formulation of micropolar fluid mechanics is developed, accounting for the lack of symmetry of stress tensor on molecular scales. This framework is then applied to employed to show that spontaneous random fluctuations of the microrotation field will arise in Couette—and Poiseuille-type flows in the absence of random (turbulence-like) fluctuations of the classical velocity field. Finally, while the permeability is classically modeled by the Darcy law or its modifications, besides considering the violations of the second law, one also needs to account for the spatial randomness of the channel network, implying a modification of the hierarchy of scale-dependent bounds on the macroscopic property of the network.

  19. Continuum percolation of congruent overlapping spherocylinders

    NASA Astrophysics Data System (ADS)

    Xu, Wenxiang; Su, Xianglong; Jiao, Yang

    2016-09-01

    Continuum percolation of randomly orientated congruent overlapping spherocylinders (composed of cylinder of height H with semispheres of diameter D at the ends) with aspect ratio α =H /D in [0 ,∞ ) is studied. The percolation threshold ϕc, percolation transition width Δ, and correlation-length critical exponent ν for spherocylinders with α in [0, 200] are determined with a high degree of accuracy via extensive finite-size scaling analysis. A generalized excluded-volume approximation for percolation threshold with an exponent explicitly depending on both aspect ratio and excluded volume for arbitrary α values in [0 ,∞ ) is proposed and shown to yield accurate predictions of ϕc for an extremely wide range of α in [0, 2000] based on available numerical and experimental data. We find ϕc is a universal monotonic decreasing function of α and is independent of the effective particle size. Our study has implications in percolation theory for nonspherical particles and composite material design.

  20. Compact continuum brain model for human electroencephalogram

    NASA Astrophysics Data System (ADS)

    Kim, J. W.; Shin, H.-B.; Robinson, P. A.

    2007-12-01

    A low-dimensional, compact brain model has recently been developed based on physiologically based mean-field continuum formulation of electric activity of the brain. The essential feature of the new compact model is a second order time-delayed differential equation that has physiologically plausible terms, such as rapid corticocortical feedback and delayed feedback via extracortical pathways. Due to its compact form, the model facilitates insight into complex brain dynamics via standard linear and nonlinear techniques. The model successfully reproduces many features of previous models and experiments. For example, experimentally observed typical rhythms of electroencephalogram (EEG) signals are reproduced in a physiologically plausible parameter region. In the nonlinear regime, onsets of seizures, which often develop into limit cycles, are illustrated by modulating model parameters. It is also shown that a hysteresis can occur when the system has multiple attractors. As a further illustration of this approach, power spectra of the model are fitted to those of sleep EEGs of two subjects (one with apnea, the other with narcolepsy). The model parameters obtained from the fittings show good matches with previous literature. Our results suggest that the compact model can provide a theoretical basis for analyzing complex EEG signals.

  1. A continuum model of retinal electrical stimulation

    NASA Astrophysics Data System (ADS)

    Joarder, Saiful A.; Abramian, Miganoosh; Suaning, Gregg J.; Lovell, Nigel H.; Dokos, Socrates

    2011-10-01

    A continuum mathematical model of retinal electrical stimulation is described. The model is represented by a passive vitreous domain, a thin layer of active retinal ganglion cell (RGC) tissue adjacent to deeper passive neural layers of the retina, the retinal pigmented epithelium (RPE) and choroid thus ending at the sclera. To validate the model, in vitro epiretinal responses to stimuli from 50 µm disk electrodes, arranged in a hexagonal mosaic, were recorded from rabbit retinas. 100 µs/phase anodic-first biphasic current pulses were delivered to the retinal surface in both the mathematical model and experiments. RGC responses were simulated and recorded using extracellular microelectrodes. The model's epiretinal thresholds compared favorably with the in vitro data. In addition, simulations showed that single-return bipolar electrodes recruited a larger area of the retina than twin-return or six-return electrodes arranged in a hexagonal layout in which a central stimulating electrode is surrounded by six, eqi-spaced returns. Simulations were also undertaken to investigate the patterns of RGC activation in an anatomically-accurate model of the retina, as well as RGC activation patterns for subretinal and suprachoroidal bipolar stimulation. This paper was originally submitted for the special issue containing contributions from the Sixth Biennial Research Congress of The Eye and the Chip.

  2. Equivalent-Continuum Modeling With Application to Carbon Nanotubes

    NASA Technical Reports Server (NTRS)

    Odegard, Gregory M.; Gates, Thomas S.; Nicholson, Lee M.; Wise, Kristopher E.

    2002-01-01

    A method has been proposed for developing structure-property relationships of nano-structured materials. This method serves as a link between computational chemistry and solid mechanics by substituting discrete molecular structures with equivalent-continuum models. It has been shown that this substitution may be accomplished by equating the vibrational potential energy of a nano-structured material with the strain energy of representative truss and continuum models. As important examples with direct application to the development and characterization of single-walled carbon nanotubes and the design of nanotube-based devices, the modeling technique has been applied to determine the effective-continuum geometry and bending rigidity of a graphene sheet. A representative volume element of the chemical structure of graphene has been substituted with equivalent-truss and equivalent continuum models. As a result, an effective thickness of the continuum model has been determined. This effective thickness has been shown to be significantly larger than the interatomic spacing of graphite. The effective thickness has been shown to be significantly larger than the inter-planar spacing of graphite. The effective bending rigidity of the equivalent-continuum model of a graphene sheet was determined by equating the vibrational potential energy of the molecular model of a graphene sheet subjected to cylindrical bending with the strain energy of an equivalent continuum plate subjected to cylindrical bending.

  3. 77 FR 23491 - Notice of Submission of Proposed Information Collection to OMB; Continuum of Care Homeless...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-19

    ... URBAN DEVELOPMENT Notice of Submission of Proposed Information Collection to OMB; Continuum of Care Homeless Assistance Grant Application--Continuum of Care Registration AGENCY: Office of the Chief... reporting burden associated with registration requirements that Continuum of Care Homeless Assistance...

  4. 77 FR 44653 - Continuum of Care Homeless Assistance Grant Application-Technical Submission

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-30

    ... URBAN DEVELOPMENT Continuum of Care Homeless Assistance Grant Application-- Technical Submission AGENCY... the original Continuum of Care Homeless Assistance Grant Application. DATES: Comments Due Date: August... lists the following information: Title of Proposal: Continuum of Care Homeless Assistance...

  5. Scalar generalized nonlinear Schrödinger equation-quantified continuum generation in an all-normal dispersion photonic crystal fiber for broadband coherent optical sources

    PubMed Central

    Tu, Haohua; Liu, Yuan; Lægsgaard, Jesper; Sharma, Utkarsh; Siegel, Martin; Kopf, Daniel; Boppart, Stephen A.

    2010-01-01

    We quantitatively predict the observed continuum-like spectral broadening in a 90-mm weakly birefringent all-normal dispersion-flattened photonic crystal fiber pumped by 1041-nm 229-fs 76-MHz pulses from a solid-state Yb:KYW laser. The well-characterized continuum pulses span a bandwidth of up to 300 nm around the laser wavelength, allowing high spectral power density pulse shaping useful for various coherent control applications. We also identify the nonlinear polarization effect that limits the bandwidth of these continuum pulses, and therefore report the path toward a series of attractive alternative broadband coherent optical sources. PMID:21197060

  6. Continuum simulations of water flow past fullerene molecules

    NASA Astrophysics Data System (ADS)

    Popadić, A.; Praprotnik, M.; Koumoutsakos, P.; Walther, J. H.

    2015-09-01

    We present continuum simulations of water flow past fullerene molecules. The governing Navier-Stokes equations are complemented with the Navier slip boundary condition with a slip length that is extracted from related molecular dynamics simulations. We find that several quantities of interest as computed by the present model are in good agreement with results from atomistic and atomistic-continuum simulations at a fraction of the cost. We simulate the flow past a single fullerene and an array of fullerenes and demonstrate that such nanoscale flows can be computed efficiently by continuum flow solvers, allowing for investigations into spatiotemporal scales inaccessible to atomistic simulations.

  7. SEACAS Theory Manuals: Part II. Nonlinear Continuum Mechanics

    SciTech Connect

    Attaway, S.W.; Laursen, T.A.; Zadoks, R.I.

    1998-09-01

    This report summarizes the key continuum mechanics concepts required for the systematic prescription and numerical solution of finite deformation solid mechanics problems. Topics surveyed include measures of deformation appropriate for media undergoing large deformations, stress measures appropriate for such problems, balance laws and their role in nonlinear continuum mechanics, the role of frame indifference in description of large deformation response, and the extension of these theories to encompass two dimensional idealizations, structural idealizations, and rigid body behavior. There are three companion reports that describe the problem formulation, constitutive modeling, and finite element technology for nonlinear continuum mechanics systems.

  8. The submillimeter radio continuum of Comet P/Brorsen-Metcalf

    SciTech Connect

    Jewitt, D.; Luu, J. MIT, Cambridge, MA )

    1990-12-01

    Observations of Comet P/Brorsen-Metcalf in the submillimeter radio continuum are presented. The observations were taken using the James Clerk Maxwell Telescope on Mauna Kea, and include the first truly submillimeter detection of a comet, and the first submillimeter continuum spectrum. The submillimeter radiation is attributed to thermal emission from a transient population of large grains with a total mass of (1-10) x 10 to the 9th kg. The large grains may be produced by catastrophic failure of part of the refractory mantle on the surface of the cometary nucleus. Models of the submillimeter continuum are discussed. 49 refs.

  9. Area Regge calculus and continuum limit [rapid communication

    NASA Astrophysics Data System (ADS)

    Khatsymovsky, V. M.

    2002-11-01

    Encountered in the literature generalisations of general relativity to independent area variables are considered, the discrete (generalised Regge calculus) and continuum ones. The generalised Regge calculus can be either with purely area variables or, as we suggest, with area tensor-connection variables. Just for the latter, in particular, we prove that in analogy with corresponding statement in ordinary Regge calculus (by Feinberg, Friedberg, Lee and Ren), passing to the (appropriately defined) continuum limit yields the generalised continuum area tensor-connection general relativity.

  10. Some fundamental aspects of the continuumization problem in granular Media

    NASA Astrophysics Data System (ADS)

    Peters, John F.

    The central problem of devising mathematical models of granular materials is how to define a granular medium as a continuum. This paper outlines the elements of a theory that could be incorporated in discrete models such as the Discrete-Element Method, without recourse to a continuum description. It is shown that familiar concepts from continuum mechanics such as stress and strain can be defined for interacting discrete quantities. Established concepts for constitutive equations can likewise be applied to discrete quantities. The key problem is how to define the constitutive response in terms of truncated strain measures that are a practical necessity for analysis of large granular systems.

  11. [Psychiatric Rehabilitation - From the Linear Continuum Approach Towards Supported Inclusion].

    PubMed

    Richter, Dirk; Hertig, Res; Hoffmann, Holger

    2016-11-01

    Background: For many decades, psychiatric rehabilitation in the German-speaking countries is following a conventional linear continuum approach. Methods: Recent developments in important fields related to psychiatric rehabilitation (UN Convention on the Rights of People with Disabilities, theory of rehabilitation, empirical research) are reviewed. Results: Common to all developments in the reviewed fields are the principles of choice, autonomy and social inclusion. These principles contradict the conventional linear continuum approach. Conclusions: The linear continuum approach of psychiatric rehabilitation should be replaced by the "supported inclusion"-approach.

  12. Microstructural and continuum evolution modeling of sintering.

    SciTech Connect

    Braginsky, Michael V.; Olevsky, Eugene A.; Johnson, D. Lynn; Tikare, Veena; Garino, Terry J.; Arguello, Jose Guadalupe, Jr.

    2003-12-01

    All ceramics and powder metals, including the ceramics components that Sandia uses in critical weapons components such as PZT voltage bars and current stacks, multi-layer ceramic MET's, ahmindmolybdenum & alumina cermets, and ZnO varistors, are manufactured by sintering. Sintering is a critical, possibly the most important, processing step during manufacturing of ceramics. The microstructural evolution, the macroscopic shrinkage, and shape distortions during sintering will control the engineering performance of the resulting ceramic component. Yet, modeling and prediction of sintering behavior is in its infancy, lagging far behind the other manufacturing models, such as powder synthesis and powder compaction models, and behind models that predict engineering properties and reliability. In this project, we developed a model that was capable of simulating microstructural evolution during sintering, providing constitutive equations for macroscale simulation of shrinkage and distortion during sintering. And we developed macroscale sintering simulation capability in JAS3D. The mesoscale model can simulate microstructural evolution in a complex powder compact of hundreds or even thousands of particles of arbitrary shape and size by 1. curvature-driven grain growth, 2. pore migration and coalescence by surface diffusion, 3. vacancy formation, grain boundary diffusion and annihilation. This model was validated by comparing predictions of the simulation to analytical predictions for simple geometries. The model was then used to simulate sintering in complex powder compacts. Sintering stress and materials viscous module were obtained from the simulations. These constitutive equations were then used by macroscopic simulations for simulating shrinkage and shape changes in FEM simulations. The continuum theory of sintering embodied in the constitutive description of Skorohod and Olevsky was combined with results from microstructure evolution simulations to model shrinkage and

  13. Cosmology of Continuum Creation and Annihilation

    NASA Astrophysics Data System (ADS)

    Ierokomos, Nikiforos

    2011-11-01

    An extensive cosmology hypothesis is presented that was developed over decades and is based on the existence and evolution of the universe via Cosmic Symmetry Breaks (CSBs) or phases with our universe (Cosmos) describable by a Cosmology of Continuum Creation and Annihilation, or CCA Cosmology. The CCA cosmology hypothesis does not belong to a Standard Model Big Bang. This hypothesis not only describes the universe but also the realm of elementary particles and forces. It provides plausible answers to a large number of puzzles in Physics and Cosmology. These answers range from those that can be calculated and values checked by observations, such as: How much and what is dark energy? How much and what is dark matter? How much baryonic matter? How much and why is there a time-delay for GRB energetic photons? When (or did?) the universe started to accelerate? Are primordial galaxies smaller? Why are orbits non-Newtonian beyond an acceleration value, and other calculable parameters. Also, answers which are more fundamental in interpretation, such as: What is mass and gravity? How many families of elementary particles exist and why are there only three generations of each? Why did the universe start with such low entropy? Does the Cosmos violate the First or Second Law of Thermodynamics? Why is there an asymmetry of matter over antimatter in the universe and what is antimatter? These and other questions the CCA hypothesis is proposing to answer. This hypothesis requires minimum assumptions and can build a coherent theory that can arrive at today's complex universe with plausible evolutionary steps from one postulate and one particle. cosmogony, non-standard cosmology, dark energy, dark matter, new elementary particles, gravity, antimatter, accelerated universe.

  14. The Hurricane-Flood-Landslide Continuum

    NASA Technical Reports Server (NTRS)

    Negri, Andrew J.; Burkardt, Nina; Golden, Joseph H.; Halverson, Jeffrey B.; Huffman, George J.; Larsen, Matthew C.; McGinley, John A.; Updike, Randall G.; Verdin, James P.; Wieczorek, Gerald F.

    2005-01-01

    In August 2004, representatives from NOAA, NASA, the USGS, and other government agencies convened in San Juan, Puerto Rim for a workshop to discuss a proposed research project called the Hurricane-Flood-Landslide Continuum (HFLC). The essence of the HFLC is to develop and integrate tools across disciplines to enable the issuance of regional guidance products for floods and landslides associated with major tropical rain systems, with sufficient lead time that local emergency managers can protect vulnerable populations and infrastructure. All three lead agencies are independently developing precipitation-flood-debris flow forecasting technologies, and all have a history of work on natural hazards both domestically and overseas. NOM has the capability to provide tracking and prediction of storm rainfall, trajectory and landfall and is developing flood probability and magnTtude capabilities. The USGS has the capability to evaluate the ambient stability of natural and man-made landforms, to assess landslide susceptibilities for those landforms, and to establish probabilities for initiation of landslides and debris flows. Additionally, the USGS has well-developed operational capacity for real-time monitoring and reporting of streamflow across distributed networks of automated gaging stations (http://water.usgs.gov/waterwatch/). NASA has the capability to provide sophisticated algorithms for satellite remote sensing of precipitation, land use, and in the future, soil moisture. The Workshop sought to initiate discussion among three agencies regarding their specific and highly complimentary capabilities. The fundamental goal of the Workshop was to establish a framework that will leverage the strengths of each agency. Once a prototype system is developed for example, in relatively data-rich Puerto Rim, it could be adapted for use in data-poor, low-infrastructure regions such as the Dominican Republic or Haiti. This paper provides an overview of the Workshop s goals

  15. Continuum and computational modeling of flexoelectricity

    NASA Astrophysics Data System (ADS)

    Mao, Sheng

    , stationary cracks, as well as structures with periodic structures, can be studied consistently with the continuum theory. We also generate predictions of experimental merit and reveal interesting flexoelectric phenomena with potential for application.

  16. Computational Overlap Coupling Between Micropolar Linear Elastic Continuum Finite Elements and Nonlinear Elastic Spherical Discrete Elements in One Dimension

    DTIC Science & Technology

    2013-01-01

    response (stress, internal state variables (ISVs)). The micromorphic continuum constitutive model will account for the inherent length scale of damaged ...2008, 56 (2), 297–335. 9. Regueiro, R. On finite strain micromorphic elastoplasticity . Int. J. Solids Struct. 2010, 47, 786–800. 10. Isbuga, V.; Regueiro

  17. Burnett-Cattaneo Continuum Theory for Shock Waves

    NASA Astrophysics Data System (ADS)

    Holian, B. L.; Mareschal, M.; Ravelo, R.

    2011-03-01

    We model strong shockwave propagation, both in the ideal gas and in the dense Lennard-Jones fluid, using a refinement of earlier work, which accounts for the cold compression by a nonlinear, Burnett-like, strain-rate dependence of the thermal conductivity, and relaxation of temperature components on the hot, compressed side of the shock front. The relaxation of the disequilibrium among the three components of the kinetic temperature, namely, the difference between the temperature in the direction of a planar shock wave and those in the transverse directions, particularly in the region near the shock front, is accomplished by a rigorous application of the Cattaneo-Maxwell relaxation equation to a reference state, namely, the steady shockwave solution of linear Navier-Stokes-Fourier theory, along with the nonlinear Burnett heat-flux term. Our new continuum theory is in nearly quantitative agreement with non-equilibrium molecular-dynamics simulations under strong shockwave conditions. Part of this work supported by the U.S. Department of Energy under contract DE-AC5206NA25396.

  18. Two-temperature continuum thermomechanics of deforming amorphous solids

    NASA Astrophysics Data System (ADS)

    Kamrin, Ken; Bouchbinder, Eran

    2014-12-01

    There is an ever-growing need for predictive models for the elasto-viscoplastic deformation of solids. Our goal in this paper is to incorporate recently developed out-of-equilibrium statistical concepts into a thermodynamically consistent, finite-deformation, continuum framework for deforming amorphous solids. The basic premise is that the configurational degrees of freedom of the material - the part of the internal energy/entropy that corresponds to mechanically stable microscopic configurations - are characterized by a configurational temperature that might differ from that of the vibrational degrees of freedom, which equilibrate rapidly with an external heat bath. This results in an approximate internal energy decomposition into weakly interacting configurational and vibrational subsystems, which exchange energy following a Fourier-like law, leading to a thermomechanical framework permitting two well-defined temperatures. In this framework, internal variables, that carry information about the state of the material equilibrate with the configurational subsystem, are explicitly associated with energy and entropy of their own, and couple to a viscoplastic flow rule. The coefficients that determine the rate of flow of entropy and heat between different internal systems are proposed to explicitly depend on the rate of irreversible deformation. As an application of this framework, we discuss two constitutive models for the response of glassy materials, a simple phenomenological model and a model related to the concept of Shear-Transformation-Zones as the basis for internal variables. The models account for several salient features of glassy deformation phenomenology. Directions for future investigation are briefly discussed.

  19. Perspective on Continuum Modeling of Mesoscale/ Macroscale Phenomena

    NASA Astrophysics Data System (ADS)

    Bammann, D. J.

    The attempt to model or predict the inelastic response or permanent deformation and failure observed in metals dates back over 180 years. Various descriptions of the post elastic response of metals have been proposed from the fields of physics, materials science (metallurgy), engineering, mechanics, and applied mathematics. The communication between these fields has improved and many of the modeling efforts today involve concepts from most or all of these fields. Early engineering description of post yield response treated the material as perfectly plastic — the material continues to deform with zero additional increase in load. These models became the basis of the mathematical theory of plasticity and were extended to account for hardening, unloading, and directional hardening. In contradistinction, rheological models treated the finite deformation of a solid similar to the deformation of a viscous fluid. In many cases of large deformation, rheological models have provided both adequate and accurate information about the deformed shape of a metal during many manufacturing processes. The treatment of geometric defects in solid bodies initiated within the mathematical theory of elasticity, the dislocation, introduced as an incompatible "cut" in a continuum body. This resulted in a very large body of literature devoted to the linear elastic study of dislocations, dislocation structures, and their interactions, and has provided essential information in the understanding of the "state" of a deformed material.

  20. Star Formation Histories from Pan-Chromatic Infrared Continuum Surveys

    NASA Astrophysics Data System (ADS)

    Molinari, Sergio

    2010-11-01

    One of the currently most disputed issues in Star Formation is the timeline of the whole process. Is it a “slow” process of cloud assembly which, mediated by magnetic fields, evolve toward turbulence-supported clumps which are eventually super-critical to collapse, e.g. McKee & Tan (2003)? Or do clumps originate in already super-critical state in the post-shock regions of large-scale Galactic converging flows, e.g. Hartmann et al. (2001) with a rapid collapse in a crossing time or so (Elmegreen 2000)? A pan-chromatic 1μm-1mm continuum view of cluster forming regions in their early stages offers access to the most massive members longward of 5-10μm, as well as the low-mass members which instead dominate the emission in the near-IR, offering an interesting potential in stimulating advances in theoretical modelling of clustered star formation, its history and rate.

  1. Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins.

    PubMed Central

    Georgescu, Roxana E; Alexov, Emil G; Gunner, Marilyn R

    2002-01-01

    Protein stability and function relies on residues being in their appropriate ionization states at physiological pH. In situ residue pK(a)s also provides a sensitive measure of the local protein environment. Multiconformation continuum electrostatics (MCCE) combines continuum electrostatics and molecular mechanics force fields in Monte Carlo sampling to simultaneously calculate side chain ionization and conformation. The response of protein to charges is incorporated both in the protein dielectric constant (epsilon(prot)) of four and by explicit conformational changes. The pK(a) of 166 residues in 12 proteins was determined. The root mean square error is 0.83 pH units, and >90% have errors of <1 pH units whereas only 3% have errors >2 pH units. Similar results are found with crystal and solution structures, showing that the method's explicit conformational sampling reduces sensitivity to the initial structure. The outcome also changes little with protein dielectric constant (epsilon(prot) 4-20). Multiconformation continuum electrostatics titrations show coupling of conformational flexibility and changes in ionization state. Examples are provided where ionizable side chain position (protein G), Asn orientation (lysozyme), His tautomer distribution (RNase A), and phosphate ion binding (RNase A and H) change with pH. Disallowing these motions changes the calculated pK(a). PMID:12324397

  2. p53 Proteoforms and Intrinsic Disorder: An Illustration of the Protein Structure-Function Continuum Concept.

    PubMed

    Uversky, Vladimir N

    2016-11-10

    Although it is one of the most studied proteins, p53 continues to be an enigma. This protein has numerous biological functions, possesses intrinsically disordered regions crucial for its functionality, can form both homo-tetramers and isoform-based hetero-tetramers, and is able to interact with many binding partners. It contains numerous posttranslational modifications, has several isoforms generated by alternative splicing, alternative promoter usage or alternative initiation of translation, and is commonly mutated in different cancers. Therefore, p53 serves as an important illustration of the protein structure-function continuum concept, where the generation of multiple proteoforms by various mechanisms defines the ability of this protein to have a multitude of structurally and functionally different states. Considering p53 in the light of a proteoform-based structure-function continuum represents a non-canonical and conceptually new contemplation of structure, regulation, and functionality of this important protein.

  3. Internal noise-driven generalized Langevin equation from a nonlocal continuum model.

    PubMed

    Sarkar, Saikat; Chowdhury, Shubhankar Roy; Roy, Debasish; Vasu, Ram Mohan

    2015-08-01

    Starting with a micropolar formulation, known to account for nonlocal microstructural effects at the continuum level, a generalized Langevin equation (GLE) for a particle, describing the predominant motion of a localized region through a single displacement degree of freedom, is derived. The GLE features a memory-dependent multiplicative or internal noise, which appears upon recognizing that the microrotation variables possess randomness owing to an uncertainty principle. Unlike its classical version, the present GLE qualitatively reproduces the experimentally measured fluctuations in the steady-state mean square displacement of scattering centers in a polyvinyl alcohol slab. The origin of the fluctuations is traced to nonlocal spatial interactions within the continuum, a phenomenon that is ubiquitous across a broad class of response regimes in solids and fluids. This renders the proposed GLE a potentially useful model in such cases.

  4. PowderSim: Lagrangian Discrete and Mesh-Free Continuum Simulation Code for Cohesive Soils

    NASA Technical Reports Server (NTRS)

    Johnson, Scott; Walton, Otis; Settgast, Randolph

    2013-01-01

    PowderSim is a calculation tool that combines a discrete-element method (DEM) module, including calibrated interparticle-interaction relationships, with a mesh-free, continuum, SPH (smoothed-particle hydrodynamics) based module that utilizes enhanced, calibrated, constitutive models capable of mimicking both large deformations and the flow behavior of regolith simulants and lunar regolith under conditions anticipated during in situ resource utilization (ISRU) operations. The major innovation introduced in PowderSim is to use a mesh-free method (SPH-based) with a calibrated and slightly modified critical-state soil mechanics constitutive model to extend the ability of the simulation tool to also address full-scale engineering systems in the continuum sense. The PowderSim software maintains the ability to address particle-scale problems, like size segregation, in selected regions with a traditional DEM module, which has improved contact physics and electrostatic interaction models.

  5. p53 Proteoforms and Intrinsic Disorder: An Illustration of the Protein Structure–Function Continuum Concept

    PubMed Central

    Uversky, Vladimir N.

    2016-01-01

    Although it is one of the most studied proteins, p53 continues to be an enigma. This protein has numerous biological functions, possesses intrinsically disordered regions crucial for its functionality, can form both homo-tetramers and isoform-based hetero-tetramers, and is able to interact with many binding partners. It contains numerous posttranslational modifications, has several isoforms generated by alternative splicing, alternative promoter usage or alternative initiation of translation, and is commonly mutated in different cancers. Therefore, p53 serves as an important illustration of the protein structure–function continuum concept, where the generation of multiple proteoforms by various mechanisms defines the ability of this protein to have a multitude of structurally and functionally different states. Considering p53 in the light of a proteoform-based structure–function continuum represents a non-canonical and conceptually new contemplation of structure, regulation, and functionality of this important protein. PMID:27834926

  6. Near-threshold continuum structure and the dissociation energies of H[sub 2], HD, and D[sub 2

    SciTech Connect

    Eyler, E.E.; Melikechi, N. )

    1993-07-01

    Using laser double-resonance spectroscopy, we have studied the second dissociation limit of all three stable isotopic variants of molecular hydrogen. Just above threshold, the vibrational continuum exhibits considerable fine-grained structure, differing greatly between isotopes because of varying nonadiabatic couplings between the [ital B], [ital B][prime], and [ital C] states. Significantly improved values of the dissociation energies are obtained from the continuum onsets. We also report preliminary investigations of atomic 2[ital S]:2[ital P] branching ratios very near threshold.

  7. Complexity, dynamic cellular network, and tumorigenesis.

    PubMed

    Waliszewski, P

    1997-01-01

    A holistic approach to tumorigenesis is proposed. The main element of the model is the existence of dynamic cellular network. This network comprises a molecular and an energetistic structure of a cell connected through the multidirectional flow of information. The interactions within dynamic cellular network are complex, stochastic, nonlinear, and also involve quantum effects. From this non-reductionist perspective, neither tumorigenesis can be limited to the genetic aspect, nor the initial event must be of molecular nature, nor mutations and epigenetic factors are mutually exclusive, nor a link between cause and effect can be established. Due to complexity, an unstable stationary state of dynamic cellular network rather than a group of unrelated genes determines the phenotype of normal and transformed cells. This implies relativity of tumor suppressor genes and oncogenes. A bifurcation point is defined as an unstable state of dynamic cellular network leading to the other phenotype-stationary state. In particular, the bifurcation point may be determined by a change of expression of a single gene. Then, the gene is called bifurcation point gene. The unstable stationary state facilitates the chaotic dynamics. This may result in a fractal dimension of both normal and tumor tissues. The co-existence of chaotic dynamics and complexity is the essence of cellular processes and shapes differentiation, morphogenesis, and tumorigenesis. In consequence, tumorigenesis is a complex, unpredictable process driven by the interplay between self-organisation and selection.

  8. 3D Continuum-Particle Simulations for Multiscale Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Wijesinghe, Sanith; Hornung, Richard; Garcia, Alejandro; Hadjiconstantinou, Nicolas

    2001-06-01

    An adaptive mesh and algorithmic refinement (AMAR) scheme to model multi-scale, continuum-particle hydrodynamic flows is presented. AMAR ensures the particle description is applied exclusively in regions with high flow gradients and discontinous material interfaces, i.e. regions where the continuum flow assumptions are typically invalid. Direct Simulation Monte Carlo (DSMC) is used to model the particle regions on the finest grid of the adaptive hierarchy. The continuum flow is modelled using the compressible flow Euler equations and is solved using a second order Godunov scheme. Coupling is achieved by conservation of fluxes across the continuum-particle grid boundaries. The AMAR data structures are supported by a C++ object oriented framework (Structured Adaptive Mesh Refinement Application Infrastructure - SAMRAI) which allows for efficient parallel implementation. The scheme also extends to simulations of gas mixtures. Results for test cases are compared with theory and experiment.

  9. Links between annual, Milankovitch and continuum temperature variability.

    PubMed

    Huybers, Peter; Curry, William

    2006-05-18

    Climate variability exists at all timescales-and climatic processes are intimately coupled, so that understanding variability at any one timescale requires some understanding of the whole. Records of the Earth's surface temperature illustrate this interdependence, having a continuum of variability following a power-law scaling. But although specific modes of interannual variability are relatively well understood, the general controls on continuum variability are uncertain and usually described as purely stochastic processes. Here we show that power-law relationships of surface temperature variability scale with annual and Milankovitch-period (23,000- and 41,000-year) cycles. The annual cycle corresponds to scaling at monthly to decadal periods, while millennial and longer periods are tied to the Milankovitch cycles. Thus the annual, Milankovitch and continuum temperature variability together represent the response to deterministic insolation forcing. The identification of a deterministic control on the continuum provides insight into the mechanisms governing interannual and longer-period climate variability.

  10. 24 CFR 578.39 - Continuum of Care planning activities.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ..., universities, affordable housing developers, law enforcement, organizations that serve veterans, and homeless and formerly homeless individuals; (2) Determining the geographic area that the Continuum of Care will... homeless providers, victim service providers, faith-based organizations, governments, businesses,...

  11. 24 CFR 578.39 - Continuum of Care planning activities.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ..., universities, affordable housing developers, law enforcement, organizations that serve veterans, and homeless and formerly homeless individuals; (2) Determining the geographic area that the Continuum of Care will... homeless providers, victim service providers, faith-based organizations, governments, businesses,...

  12. Vasculopathy of Aging and the Revised Cardiovascular Continuum

    PubMed Central

    Kim, Su-A; Park, Jeong Bae; O'Rourke, Michael F.

    2015-01-01

    There have been attempts to explain the process of developments in overt cardiovascular disease, resulting in the presentation of the classic cardiovascular disease continuum and the aging cardiovascular continuum. Although the starting points of these two continua are different, they meet in the midstream of the cycle and reach a consensus at the end of the process. The announcement of the aging cardiovascular continuum made both continua complete, explaining the cardiovascular events in patients without atherosclerotic cardiovascular disease with aging. Impairment of the vascular structure by pulse wave and reflected wave is considered the cause of aortic damage, which influences the development of ischemic heart disease and the development of overt renal disease or cerebrovascular disease. The pathophysiology of vascular aging through pulse wave and its effect on other organs was discussed with Prof. Michael F. O'Rourke who devised the aging cardiovascular continuum. PMID:26587463

  13. Equivalent-Continuum Modeling of Nano-Structured Materials

    NASA Technical Reports Server (NTRS)

    Odegard, Gregory M.; Gates, Thomas S.; Nicholson, Lee M.; Wise, Kristopher E.

    2001-01-01

    A method has been developed for modeling structure-property relationships of nano-structured materials. This method serves as a link between computational chemistry and solid mechanics by substituting discrete molecular structures with an equivalent-continuum model. It has been shown that this substitution may be accomplished by equating the vibrational potential energy of a nano-structured material with the strain energy of representative truss and continuum models. As an important example with direct application to the development and characterization of single-walled carbon nanotubes, the model has been applied to determine the effective continuum geometry of a graphene sheet. A representative volume element of the equivalent-continuum model has been developed with an effective thickness. This effective thickness has been shown to be similar to, but slightly smaller than, the interatomic spacing of graphite.

  14. Molecular-orbital decomposition of the ionization continuum for a diatomic molecule by angle- and energy-resolved photoelectron spectroscopy. I. Formalism

    NASA Astrophysics Data System (ADS)

    Park, Hongkun; Zare, Richard N.

    1996-03-01

    A theoretical formalism is developed for the quantum-state-specific photoelectron angular distributions (PADs) from the direct photoionization of a diatomic molecule in which both the ionizing state and the state of the ion follow Hund's case (b) coupling. The formalism is based on the molecular-orbital decomposition of the ionization continuum and therefore fully incorporates the molecular nature of the photoelectron-ion scattering within the independent electron approximation. The resulting expression for the quantum-state-specific PADs is dependent on two distinct types of dynamical quantities, one that pertains only to the ionization continuum and the other that depends both on the ionizing state and the ionization continuum. Specifically, the electronic dipole-moment matrix element rlλ exp(iηlλ) for the ejection of a photoelectron with orbital angular momentum quantum number l making a projection λ on the internuclear axis is expressed as ΣαλŪlαλλ exp (iπτ¯αλλ) Mαλλ, where Ūλ is the electronic transformation matrix, τ¯αλλ is the scattering phase shift associated with the αλth continuum molecular orbital, and Mαλλ is the real electronic dipole-moment matrix element that connects the ionizing orbital to the αλth continuum molecular orbital. Because Ūλ and τ¯αλλ depend only on the dynamics in the ionization continuum, this formalism allows maximal exploitation of the commonality between photoionization processes from different ionizing states. It also makes possible the direct experimental investigation of scattering matrices for the photoelectron-ion scattering and thus the dynamics in the ionization continuum by studying the quantum-state-specific PADs, as illustrated in the companion article on the photoionization of NO.

  15. A hybrid particle/continuum approach for nonequilibrium hypersonic flows

    NASA Astrophysics Data System (ADS)

    Wang, Wen-Lan

    A hybrid particle-continuum computational framework is developed and presented for simulating nonequilibrium hypersonic flows, aimed to be more accurate than conventional continuum methods and faster than particle methods. The frame work consists of the direct simulation Monte Carlo-Information Preservation (DSMC-IP) method coupled with a Navier-Stokes solver. Since the DSMC-IP method provides the macroscopic information at each time step, determination of the continuum fluxes across the interface between the particle and continuum domains becomes straightforward. Buffer and reservoir calls are introduced in the continuum domain and work as an extension of the particle domain. At the end of the particle movement phase, particles in either particle or buffer cells are retained. All simulated particles in the reservoir cells are first deleted for each time, step and re-generated based on the local cell values. The microscopic velocities for the newly generated particles are initialized to the Chapman-Enskog distribution using an acceptance-rejection scheme. Continuum breakdown in a flow is defined as when the continuum solution departs from the particle solution to at least 5%. Numerical investigations show that a Knudsen-number-like parameter can best predict the continuum breakdown in the flows of interest. Numerical experiments of hypersonic flows over a simple blunted cone and a much more complex hollow cylinder/flare are conducted. The solutions for the two geometries considered from the hybrid framework are compared with experimental data and pure particle solutions. Generally speaking, it is concluded that the hybrid approach works quite well. In the blunted cone flow, numerical accuracy is improved when 10 layers of buffer cells are employed and the continuum breakdown cut-off value is set to be 0.03. In the hollow cylinder/flare hybrid simulation, the size of the separation zone near the conjunction of the cylinder and flare is improved from the initial

  16. Fatigue of cellular materials

    SciTech Connect

    Huang, J.S.; Lin, J.Y.

    1996-01-01

    The fatigue of cellular materials is analyzed using dimensional arguments. When the first unbroken cell wall ahead of the macrocrack tip fails after some cycles of loading, the macrocrack advances one cell diameter, giving the macrocrack growth rate of cellular materials. Paris law for microcrack propagation, Basquin law for high cycle fatigue and Coffin-Manson law for low cycle fatigue are employed in calculating the number of cycles to failure of the first unbroken cell wall ahead of the macrocrack tip. It is found that fatigue of cellular materials depends on cyclic stress intensity range, cell size, relative density and the fatigue parameters of the solid from which they are made. Theoretical modelling of fatigue of foams is compared to data in polymer foams; agreement is good.

  17. Epigenetics and Cellular Metabolism

    PubMed Central

    Xu, Wenyi; Wang, Fengzhong; Yu, Zhongsheng; Xin, Fengjiao

    2016-01-01

    Living eukaryotic systems evolve delicate cellular mechanisms for responding to various environmental signals. Among them, epigenetic machinery (DNA methylation, histone modifications, microRNAs, etc.) is the hub in transducing external stimuli into transcriptional response. Emerging evidence reveals the concept that epigenetic signatures are essential for the proper maintenance of cellular metabolism. On the other hand, the metabolite, a main environmental input, can also influence the processing of epigenetic memory. Here, we summarize the recent research progress in the epigenetic regulation of cellular metabolism and discuss how the dysfunction of epigenetic machineries influences the development of metabolic disorders such as diabetes and obesity; then, we focus on discussing the notion that manipulating metabolites, the fuel of cell metabolism, can function as a strategy for interfering epigenetic machinery and its related disease progression as well. PMID:27695375

  18. Origins of cellular geometry

    PubMed Central

    2011-01-01

    Cells are highly complex and orderly machines, with defined shapes and a startling variety of internal organizations. Complex geometry is a feature of both free-living unicellular organisms and cells inside multicellular animals. Where does the geometry of a cell come from? Many of the same questions that arise in developmental biology can also be asked of cells, but in most cases we do not know the answers. How much of cellular organization is dictated by global cell polarity cues as opposed to local interactions between cellular components? Does cellular structure persist across cell generations? What is the relationship between cell geometry and tissue organization? What ensures that intracellular structures are scaled to the overall size of the cell? Cell biology is only now beginning to come to grips with these questions. PMID:21880160

  19. Decomposition of the photoabsorption Schumann-Runge continuum in O2

    NASA Technical Reports Server (NTRS)

    Cartwright, D. C.; Fiamengo, N. A.; Williams, W.; Trajmar, S.

    1976-01-01

    The photoabsorption Schumann-Runge continuum in O2 has been decomposed into the contribution from states of both valence and Rydberg character. The decomposition of the experimental photoabsorption (or high-energy, zero-angle, electron energy-loss) data contains contributions from three valence states, four Rydberg states, and one state of unknown character. Information on the perturbed valence-state potential-energy curves in the Franck-Condon region obtained by this analysis substantiate the recent theoretical conclusions of strong valence-Rydberg perturbations in the 8-12 eV excitation region. There is presently no unambiguous identification for the state at 8.93 plus or minus 0.04 eV, found in the optical and all the electron energy-loss data.

  20. Translational research: understanding the continuum from bench to bedside.

    PubMed

    Drolet, Brian C; Lorenzi, Nancy M

    2011-01-01

    The process of translating basic scientific discoveries to clinical applications, and ultimately to public health improvements, has emerged as an important, but difficult, objective in biomedical research. The process is best described as a "translation continuum" because various resources and actions are involved in this progression of knowledge, which advances discoveries from the bench to the bedside. The current model of this continuum focuses primarily on translational research, which is merely one component of the overall translation process. This approach is ineffective. A revised model to address the entire continuum would provide a methodology to identify and describe all translational activities (eg, implementation, adoption translational research, etc) as well their place within the continuum. This manuscript reviews and synthesizes the literature to provide an overview of the current terminology and model for translation. A modification of the existing model is proposed to create a framework called the Biomedical Research Translation Continuum, which defines the translation process and describes the progression of knowledge from laboratory to health gains. This framework clarifies translation for readers who have not followed the evolving and complicated models currently described. Authors and researchers may use the continuum to understand and describe their research better as well as the translational activities within a conceptual framework. Additionally, the framework may increase the advancement of knowledge by refining discussions of translation and allowing more precise identification of barriers to progress.

  1. Spectral structure and stability studies on microstructure-fiber continuum

    NASA Astrophysics Data System (ADS)

    Gu, Xun; Kimmel, Mark; Zeek, Erik; Shreenath, Aparna P.; Trebino, Rick P.; Windeler, Robert S.

    2003-07-01

    Although previous direct measurements of the microstructure-fiber continuum have all showed a smooth and stable spectrum, our cross-correlation frequency-resolved optical gating (XFROG) full-intensity-and-phase characterization of the continuum pulse, utilizing sum-frequency-generation with a pre-characterized reference pulse and the angle-dithered-crystal technique, indicates that fine-scale spectral structure exists on a single-shot basis, contrary to previous observations. In particular, deep and fine oscillations are found in the retrieved spectrum, and the retrieved trace contains a "measles" pattern, whereas the measured trace and the independently-measured spectrum are rather smooth. The discrepancy is shown to be the result of unstable single-shot spectral structure. Although the XFROG measurement is not able to directly measure the single-shot fine structure in the trace, the redundancy of information in FROG traces enables the retrieval algorithm to correctly recognize the existence of the spectral fine structure, and restore the structure in the retrieved trace and spectrum. Numerical simulations have supported our hypothesis, and we directly observed the fine spectral structure in single-shot measurements of the continuum spectrum and the structure was seen to be highly unstable, the continuum spectrum appearing smooth only when many shots are averaged. Despite the structure and instability in the continuum spectrum, coherence experiments also reveal that the spectral phase is rather stable, being able to produce well-defined spectral fringes across the entire continuum bandwidth.

  2. Relativistic corrections and non-Gaussianity in radio continuum surveys

    SciTech Connect

    Maartens, Roy; Zhao, Gong-Bo; Bacon, David; Koyama, Kazuya; Raccanelli, Alvise E-mail: Gong-bo.Zhao@port.ac.uk E-mail: Kazuya.Koyama@port.ac.uk

    2013-02-01

    Forthcoming radio continuum surveys will cover large volumes of the observable Universe and will reach to high redshifts, making them potentially powerful probes of dark energy, modified gravity and non-Gaussianity. We consider the continuum surveys with LOFAR, WSRT and ASKAP, and examples of continuum surveys with the SKA. We extend recent work on these surveys by including redshift space distortions and lensing convergence in the radio source auto-correlation. In addition we compute the general relativistic (GR) corrections to the angular power spectrum. These GR corrections to the standard Newtonian analysis of the power spectrum become significant on scales near and beyond the Hubble scale at each redshift. We find that the GR corrections are at most percent-level in LOFAR, WODAN and EMU surveys, but they can produce O(10%) changes for high enough sensitivity SKA continuum surveys. The signal is however dominated by cosmic variance, and multiple-tracer techniques will be needed to overcome this problem. The GR corrections are suppressed in continuum surveys because of the integration over redshift — we expect that GR corrections will be enhanced for future SKA HI surveys in which the source redshifts will be known. We also provide predictions for the angular power spectra in the case where the primordial perturbations have local non-Gaussianity. We find that non-Gaussianity dominates over GR corrections, and rises above cosmic variance when f{sub NL}∼>5 for SKA continuum surveys.

  3. CRITIQUE OF DUAL CONTINUUM FORMULATIONS OF MULTICOMPONENT REACTIVE TRANSPORT IN FRACTURED POROUS MEDIA

    SciTech Connect

    Lichtner, P.C.

    2000-02-01

    Subsurface flow processes may take place at many different scales. The different scales refer to rock pore structure, micro-fractures, distinct fracture networks ranging from small to large fracture spacing, and even faults. Presently, there is no satisfactory methodology for describing quantitatively flow and reactive transport in multi-scale media. Approaches commonly applied to model fractured systems include single continuum models (SCM), equivalent continuum models (ECM), discrete fracture models (DFM), and various forms of dual continuum models (DCM). The SCM describes flow in the fracture network only and is valid in the absence of fracture-matrix interaction. The ECM, on the other hand, requires pervasive interaction between fracture and matrix and is based on averaging their properties. The ECM is characterized by equal fracture and matrix solute concentrations, but generally different mineral concentrations. The DFM is perhaps the most rigorous, but would require inordinate computational resources for a highly fractured rock mass. The DCM represents a fractured porous medium as two interacting continua with one continuum corresponding to the fracture network and the other the matrix. A coupling term provides mass transfer between the two continua. Vidues for mineral and solute concentrations and other properties such as liquid saturation state maybe assigned individually to fracture and matrix. Two forms of the DCM are considered characterized by connected and disconnected matrix blocks. The former is referred to as the DCCM (dual continuum connected matrix) model and the latter as the DCDM (dual continuum disconnected matrix) model. In contrast to the DCCM model in which concentration gradients in the matrix are allowed only parallel to the fracture, the DFM provides for matrix concentration gradients perpendicular to the fracture. The DFM and DCCM models can agree with each other only in the case where both reduce to the ECM. The DCCM model exhibits the

  4. Cellular genetic therapy.

    PubMed

    Del Vecchio, F; Filareto, A; Spitalieri, P; Sangiuolo, F; Novelli, G

    2005-01-01

    Cellular genetic therapy is the ultimate frontier for those pathologies that are consequent to a specific nonfunctional cellular type. A viable cure for there kinds of diseases is the replacement of sick cells with healthy ones, which can be obtained from the same patient or a different donor. In fact, structures can be corrected and strengthened with the introduction of undifferentiated cells within specific target tissues, where they will specialize into the desired cellular types. Furthermore, consequent to the recent results obtained with the transdifferentiation experiments, a process that allows the in vitro differentiation of embryonic and adult stem cells, it has also became clear that many advantages may be obtained from the use of stem cells to produce drugs, vaccines, and therapeutic molecules. Since stem cells can sustain lineage potentials, the capacity for differentiation, and better tolerance for the introduction of exogenous genes, they are also considered as feasible therapeutic vehicles for gene therapy. In fact, it is strongly believed that the combination of cellular genetic and gene therapy approaches will definitely allow the development of new therapeutic strategies as well as the production of totipotent cell lines to be used as experimental models for the cure of genetic disorders.

  5. Genetic Dominance & Cellular Processes

    ERIC Educational Resources Information Center

    Seager, Robert D.

    2014-01-01

    In learning genetics, many students misunderstand and misinterpret what "dominance" means. Understanding is easier if students realize that dominance is not a mechanism, but rather a consequence of underlying cellular processes. For example, metabolic pathways are often little affected by changes in enzyme concentration. This means that…

  6. Genomic Study of Cardiovascular Continuum Comorbidity

    PubMed Central

    Makeeva, O. A.; Sleptsov, A. A.; Kulish, E. V.; Barbarash, O. L.; Mazur, A. M.; Prokhorchuk, E. B.; Chekanov, N. N.; Stepanov, V. A.; Puzyrev, V. P.

    2015-01-01

    Comorbidity or a combination of several diseases in the same individual is a common and widely investigated phenomenon. However, the genetic background for non–random disease combinations is not fully understood. Modern technologies and approaches to genomic data analysis enable the investigation of the genetic profile of patients burdened with several diseases (polypathia, disease conglomerates) and its comparison with the profiles of patients with single diseases. An association study featuring three groups of patients with various combinations of cardiovascular disorders and a control group of relatively healthy individuals was conducted. Patients were selected as follows: presence of only one disease, ischemic heart disease (IHD); a combination of two diseases, IHD and arterial hypertension (AH); and a combination of several diseases, including IHD, AH, type 2 diabetes mellitus (T2DM), and hypercholesterolemia (HC). Genotyping was performed using the “My Gene” genomic service (www.i–gene.ru). An analysis of 1,400 polymorphic genetic variants and their associations with the studied phenotypes are presented. A total of 14 polymorphic variants were associated with the phenotype “IHD only,” including those in the APOB, CD226, NKX2–5, TLR2, DPP6, KLRB1, VDR, SCARB1, NEDD4L, and SREBF2 genes, and intragenic variants rs12487066, rs7807268, rs10896449, and rs944289. A total of 13 genetic markers were associated with the “IHD and AH” phenotype, including variants in the BTNL2, EGFR, CNTNAP2, SCARB1, and HNF1A genes, and intragenic polymorphisms rs801114, rs10499194, rs13207033, rs2398162, rs6501455, and rs1160312. A total of 14 genetic variants were associated with a combination of several diseases of cardiovascular continuum (CVC), including those in the TAS2R38, SEZ6L, APOA2, KLF7, CETP, ITGA4, RAD54B, LDLR, and MTAP genes, along with intragenic variants rs1333048, rs1333049, and rs6501455. One common genetic marker was identified for the

  7. On the Taylor test, Part 3: A continuum mechanics code analysis of steady plastic wave propagation

    SciTech Connect

    Maudlin, P.J.; Foster, J.C. Jr.; Jones, S.E.

    1994-11-01

    Simple conservation relationships (``Jump`` conditions) in conjunction with postulated material constitutive behavior are applied to steady plastic strain waves propagating in problems of uniaxial stress and Taylor Cylinder Impact. These problems are simulated with a two-dimensional Lagrangian continuum mechanics code for numerically validating the Jump relationships as an accurate analytical representation of plastic wave propagation. The constitutive behavior used in this effort assumes isotropy and models the thermodynamic response with a Mie-Grunisen Equation-of-State and the mechanical response with the rate-dependent Johnson-Cook and MTS flow stress models. The Jump relationships successfully replicate the results produced by continuum code simulations of plastic wave propagation and provide a methodology for constructing mechanical constitutive models from experimental plastic wave speed information. Comparisons are also presented between experimental speeds from Taylor Cylinder Impact tests with Jump relationships and continuum code predictions, indicating that the above mentioned flow stress models may not accurately capture plastic wave propagation speeds in annealed and hardened copper.

  8. Real-time tracking of two-electron dynamics in the ionization continuum of Xe

    NASA Astrophysics Data System (ADS)

    Baggash, M.; Rottke, H.

    2015-05-01

    Real-time tracking of atomic two-electron coherent dynamics is investigated through excitation of autoionizing wave packets in the ionization continuum of xenon. Extreme-ultraviolet high-order harmonics of ultrashort Ti:Sapphire laser pulses start the wave packets in energy ranges with a dense covering by two-valence-electron and single-inner-valence-electron excited-state resonances. The 15th harmonic covers resonances of type 5 s 5 p6n l with principle quantum number n ranging from n ≈14 up to n ≈21 and one resonance of type 5 s25 p4n l n'l' with fixed n ,n' and orbital angular momenta l ,l' . In parallel the 17th harmonic starts a wave packet beyond the Xe 5 s 5 p6 ionization threshold where exclusively resonances contribute with two-valence electrons being excited. The evolution in time of these wave packets is probed by inducing a continuum-continuum transition with the Ti:Sapphire laser pulses at variable delay times and detecting the photoelectrons after this two-photon transition. The dependence of the experimental data on the pump-probe delay time can be approximated by a two-photon transition probability derived on the basis of Fano's theory.

  9. Soft X-ray continuum radiation from low-energy pinch discharges of hydrogen

    NASA Astrophysics Data System (ADS)

    Mills, R.; Booker, R.; Lu, Y.; Lu

    2013-10-01

    Under a study contracted by GEN3 Partners, spectra of high current pinch discharges in pure hydrogen and helium were recorded in the extreme ultraviolet radiation region at the Harvard Smithsonian Center for Astrophysics (CfA) in an attempt to reproduce experimental results published by BlackLight Power, Inc. (BLP) showing predicted continuum radiation due to hydrogen in the 10-30 nm region (Mills, R. L. and Lu, Y. 2010 Hydrino continuum transitions with cutoffs at 22.8 nm and 10.1 nm. Int. J. Hydrog. Energy 35, 8446-8456, doi:10.1016?j.ijhydene.2010.05.098). Alternative explanations were considered to the claimed interpretation of the continuum radiation as being that emitted during transitions of H to lower-energy states (hydrinos). Continuum radiation was observed at CfA in the 10-30 nm region that matched BLP's results. Considering the low energy of 5.2 J per pulse, the observed radiation in the energy range of about 120-40 eV, reference experiments and analysis of plasma gases, cryofiltration to remove contaminants, and spectra of the electrode metal, no conventional explanation was found in the prior or present work to be plausible including contaminants, electrode metal emission, and Bremsstrahlung, ion recombination, molecular or molecular ion band radiation, and instrument artifacts involving radicals and energetic ions reacting at the charge-coupled device and H2 re-radiation at the detector chamber. Moreover, predicted selective extraordinarily high-kinetic energy H was observed by the corresponding Doppler broadening of the Balmer α line.

  10. Theoretical Calculation and Validation of the Water Vapor Continuum Absorption

    NASA Technical Reports Server (NTRS)

    Ma, Qiancheng; Tipping, Richard H.

    1998-01-01

    The primary objective of this investigation is the development of an improved parameterization of the water vapor continuum absorption through the refinement and validation of our existing theoretical formalism. The chief advantage of our approach is the self-consistent, first principles, basis of the formalism which allows us to predict the frequency, temperature and pressure dependence of the continuum absorption as well as provide insights into the physical mechanisms responsible for the continuum absorption. Moreover, our approach is such that the calculated continuum absorption can be easily incorporated into satellite retrieval algorithms and climate models. Accurate determination of the water vapor continuum is essential for the next generation of retrieval algorithms which propose to use the combined constraints of multispectral measurements such as those under development for EOS data analysis (e.g., retrieval algorithms based on MODIS and AIRS measurements); current Pathfinder activities which seek to use the combined constraints of infrared and microwave (e.g., HIRS and MSU) measurements to improve temperature and water profile retrievals, and field campaigns which seek to reconcile spectrally-resolved and broad-band measurements such as those obtained as part of FIRE. Current widely used continuum treatments have been shown to produce spectrally dependent errors, with the magnitude of the error dependent on temperature and abundance which produces errors with a seasonal and latitude dependence. Translated into flux, current water vapor continuum parameterizations produce flux errors of order 10 W/sq m, which compared to the 4 W/sq m magnitude of the greenhouse gas forcing and the 1-2 W/sq m estimated aerosol forcing is certainly climatologically significant and unacceptably large. While it is possible to tune the empirical formalisms, the paucity of laboratory measurements, especially at temperatures of interest for atmospheric applications, preclude

  11. Theoretical Calculation and Validation of the Water Vapor Continuum Absorption

    NASA Technical Reports Server (NTRS)

    Ma, Qiancheng; Tipping, Richard H.

    1998-01-01

    The primary objective of this investigation is the development of an improved parameterization of the water vapor continuum absorption through the refinement and validation of our existing theoretical formalism. The chief advantage of our approach is the self-consistent, first principles, basis of the formalism which allows us to predict the frequency, temperature and pressure dependence of the continuum absorption as well as provide insights into the physical mechanisms responsible for the continuum absorption. Moreover, our approach is such that the calculated continuum absorption can be easily incorporated into satellite retrieval algorithms and climate models. Accurate determination of the water vapor continuum is essential for the next generation of retrieval algorithms which propose to use the combined constraints of multi-spectral measurements such as those under development for EOS data analysis (e.g., retrieval algorithms based on MODIS and AIRS measurements); current Pathfinder activities which seek to use the combined constraints of infrared and microwave (e.g., HIRS and MSU) measurements to improve temperature and water profile retrievals, and field campaigns which seek to reconcile spectrally-resolved and broad-band measurements such as those obtained as part of FIRE. Current widely used continuum treatments have been shown to produce spectrally dependent errors, with the magnitude of the error dependent on temperature and abundance which produces errors with a seasonal and latitude dependence. Translated into flux, current water vapor continuum parameterizations produce flux errors of order 10 W/ml, which compared to the 4 W/m' magnitude of the greenhouse gas forcing and the 1-2 W/m' estimated aerosol forcing is certainly climatologically significant and unacceptably large. While it is possible to tune the empirical formalisms, the paucity of laboratory measurements, especially at temperatures of interest for atmospheric applications, preclude tuning

  12. Measuring the continuum polarization with ESPaDOnS

    NASA Astrophysics Data System (ADS)

    Pereyra, A.; Rodrigues, C. V.; Martioli, E.

    2015-01-01

    Aims: Our goal is to test the feasibility of obtaining accurate measurements of the continuum polarization from high-resolution spectra using the spectropolarimetric mode of ESPaDOnS. Methods: We used the new pipeline OPERA to reduce recent and archived ESPaDOnS data. Several polarization standard stars and science objects were tested for the linear mode. In addition, the circular mode was tested using several objects from the archive with expected null polarization. Synthetic broad-band polarization was computed from the ESPaDOnS continuum polarization spectra and compared with published values (when available) to quantify the accuracy of the instrument. Results: The continuum linear polarization measured by ESPaDOnS is consistent with broad-band polarimetry measurements available in the literature. The accuracy in the degree of linear polarization is around 0.2-0.3% considering the full sample. The accuracy in polarization position angle using the most polarized objects is better than 5°. Consistent with this, the instrumental polarization computed for the circular continuum polarization is also between 0.2-0.3%. Our results suggest that measurements of the continuum polarization using ESPaDOnS are viable and can be used to study many astrophysical objects. Based on observations obtained at the Canada-France-Hawaii Telescope (CFHT) which is operated by the National Research Council of Canada, the Institut National des Sciences de l'Univers of the Centre National de la Recherche Scientique of France, and the University of Hawaii.

  13. A Framework for Health Communication Across the HIV Treatment Continuum

    PubMed Central

    Van Lith, Lynn M.; Mallalieu, Elizabeth C.; Packman, Zoe R.; Myers, Emily; Ahanda, Kim Seifert; Harris, Emily; Gurman, Tilly; Figueroa, Maria-Elena

    2017-01-01

    Background: As test and treat rolls out, effective interventions are needed to address the determinants of outcomes across the HIV treatment continuum and ensure that people infected with HIV are promptly tested, initiate treatment early, adhere to treatment, and are virally suppressed. Communication approaches offer viable options for promoting relevant behaviors across the continuum. Conceptual Framework: This article introduces a conceptual framework, which can guide the development of effective health communication interventions and activities that aim to impact behaviors across the HIV treatment continuum in low- and medium-income countries. The framework includes HIV testing and counseling, linkage to care, retention in pre-antiretroviral therapy and antiretroviral therapy initiation in one single-stage linkage to care and treatment, and adherence for viral suppression. The determinants of behaviors vary across the continuum and include both facilitators and barriers with communication interventions designed to focus on specific determinants presented in the model. At each stage, relevant determinants occur at the various levels of the social–ecological model: intrapersonal, interpersonal, health services, community, and policy. Effective health communication interventions have mainly relied on mHealth, interpersonal communication through service providers and peers, community support groups, and treatment supporters. Discussion: The conceptual framework and evidence presented highlight areas across the continuum where health communication can significantly impact treatment outcomes to reach the 90-90-90 goals by strategically addressing key behavioral determinants. As test and treat rolls out, multifaceted health communication approaches will be critical. PMID:27930606

  14. ALMA Band 8 Continuum Emission from Orion Source I

    NASA Astrophysics Data System (ADS)

    Hirota, Tomoya; Machida, Masahiro N.; Matsushita, Yuko; Motogi, Kazuhito; Matsumoto, Naoko; Kim, Mi Kyoung; Burns, Ross A.; Honma, Mareki

    2016-12-01

    We have measured continuum flux densities of a high-mass protostar candidate, a radio source I in the Orion KL region (Orion Source I) using the Atacama Large Millimeter/Submillimeter Array (ALMA) at band 8 with an angular resolution of 0.″1. The continuum emission at 430, 460, and 490 GHz associated with Source I shows an elongated structure along the northwest-southeast direction perpendicular to the so-called low-velocity bipolar outflow. The deconvolved size of the continuum source, 90 au × 20 au, is consistent with those reported previously at other millimeter/submillimeter wavelengths. The flux density can be well fitted to the optically thick blackbody spectral energy distribution, and the brightness temperature is evaluated to be 700-800 K. It is much lower than that in the case of proton-electron or H- free-free radiations. Our data are consistent with the latest ALMA results by Plambeck & Wright, in which the continuum emission was proposed to arise from the edge-on circumstellar disk via thermal dust emission, unless the continuum source consists of an unresolved structure with a smaller beam filling factor.

  15. A continuum hard-sphere model of protein adsorption

    NASA Astrophysics Data System (ADS)

    Finch, Craig; Clarke, Thomas; Hickman, James J.

    2013-07-01

    Protein adsorption plays a significant role in biological phenomena such as cell-surface interactions and the coagulation of blood. Two-dimensional random sequential adsorption (RSA) models are widely used to model the adsorption of proteins on solid surfaces. Continuum equations have been developed so that the results of RSA simulations can be used to predict the kinetics of adsorption. Recently, Brownian dynamics simulations have become popular for modeling protein adsorption. In this work a continuum model was developed to allow the results from a Brownian dynamics simulation to be used as the boundary condition in a computational fluid dynamics (CFD) simulation. Brownian dynamics simulations were used to model the diffusive transport of hard-sphere particles in a liquid and the adsorption of the particles onto a solid surface. The configuration of the adsorbed particles was analyzed to quantify the chemical potential near the surface, which was found to be a function of the distance from the surface and the fractional surface coverage. The near-surface chemical potential was used to derive a continuum model of adsorption that incorporates the results from the Brownian dynamics simulations. The equations of the continuum model were discretized and coupled to a CFD simulation of diffusive transport to the surface. The kinetics of adsorption predicted by the continuum model closely matched the results from the Brownian dynamics simulation. This new model allows the results from mesoscale simulations to be incorporated into micro- or macro-scale CFD transport simulations of protein adsorption in practical devices.

  16. Do subglacial bedforms comprise a size and shape continuum?

    NASA Astrophysics Data System (ADS)

    Ely, Jeremy C.; Clark, Chris D.; Spagnolo, Matteo; Stokes, Chris R.; Greenwood, Sarah L.; Hughes, Anna L. C.; Dunlop, Paul; Hess, Dale

    2016-03-01

    Understanding the evolution of the ice-bed interface is fundamentally important for gaining insight into the dynamics of ice masses and how subglacial landforms are created. However, the formation of the suite of landforms generated at this boundary - subglacial bedforms - is a contentious issue that is yet to be fully resolved. Bedforms formed in aeolian, fluvial, and marine environments either belong to separate morphological populations or are thought to represent a continuum of forms generated by the same governing processes. For subglacial bedforms, a size and shape continuum has been hypothesised, yet it has not been fully tested. Here we analyse the largest data set of subglacial bedform size and shape measurements ever collated (96,900 bedforms). Our results show that flutes form a distinct population of narrow bedforms. However, no clear distinction was found between drumlins and megascale glacial lineations (MSGLs), which form a continuum of subglacial lineations. A continuum of subglacial ribs also exists, with no clear size or shape distinctions indicating separate populations. Furthermore, an underreported class of bedform with no clear orientation to ice flow (quasi-circular bedforms) overlaps with the ribbed and lineation continua and typically occurs in spatial transition zones between the two, potentially merging these three bedform types into a larger continuum.

  17. A field theoretical approach to the quasi-continuum method

    NASA Astrophysics Data System (ADS)

    Iyer, Mrinal; Gavini, Vikram

    2011-08-01

    The quasi-continuum method has provided many insights into the behavior of lattice defects in the past decade. However, recent numerical analysis suggests that the approximations introduced in various formulations of the quasi-continuum method lead to inconsistencies—namely, appearance of ghost forces or residual forces, non-conservative nature of approximate forces, etc.—which affect the numerical accuracy and stability of the method. In this work, we identify the source of these errors to be the incompatibility of using quadrature rules, which is a local notion, on a non-local representation of energy. We eliminate these errors by first reformulating the extended interatomic interactions into a local variational problem that describes the energy of a system via potential fields. We subsequently introduce the quasi-continuum reduction of these potential fields using an adaptive finite-element discretization of the formulation. We demonstrate that the present formulation resolves the inconsistencies present in previous formulations of the quasi-continuum method, and show using numerical examples the remarkable improvement in the accuracy of solutions. Further, this field theoretic formulation of quasi-continuum method makes mathematical analysis of the method more amenable using functional analysis and homogenization theories.

  18. Fuzzy cellular automata models in immunology

    SciTech Connect

    Ahmed, E.

    1996-10-01

    The self-nonself character of antigens is considered to be fuzzy. The Chowdhury et al. cellular automata model is generalized accordingly. New steady states are found. The first corresponds to a below-normal help and suppression and is proposed to be related to autoimmune diseases. The second corresponds to a below-normal B-cell level.

  19. Simulating invasion with cellular automata: connecting cell-scale and population-scale properties.

    PubMed

    Simpson, Matthew J; Merrifield, Alistair; Landman, Kerry A; Hughes, Barry D

    2007-08-01

    Interpretive and predictive tools are needed to assist in the understanding of cell invasion processes. Cell invasion involves cell motility and proliferation, and is central to many biological processes including developmental morphogenesis and tumor invasion. Experimental data can be collected across a wide range of scales, from the population scale to the individual cell scale. Standard continuum or discrete models used in isolation are insufficient to capture this wide range of data. We develop a discrete cellular automata model of invasion with experimentally motivated rules. The cellular automata algorithm is applied to a narrow two-dimensional lattice and simulations reveal the formation of invasion waves moving with constant speed. The simulation results are averaged in one dimension-these data are used to identify the time history of the leading edge to characterize the population-scale wave speed. This allows the relationship between the population-scale wave speed and the cell-scale parameters to be determined. This relationship is analogous to well-known continuum results for Fisher's equation. The cellular automata algorithm also produces individual cell trajectories within the invasion wave that are analogous to cell trajectories obtained with new experimental techniques. Our approach allows both the cell-scale and population-scale properties of invasion to be predicted in a way that is consistent with multiscale experimental data. Furthermore we suggest that the cellular automata algorithm can be used in conjunction with individual data to overcome limitations associated with identifying cell motility mechanisms using continuum models alone.

  20. Predictability in cellular automata.

    PubMed

    Agapie, Alexandru; Andreica, Anca; Chira, Camelia; Giuclea, Marius

    2014-01-01

    Modelled as finite homogeneous Markov chains, probabilistic cellular automata with local transition probabilities in (0, 1) always posses a stationary distribution. This result alone is not very helpful when it comes to predicting the final configuration; one needs also a formula connecting the probabilities in the stationary distribution to some intrinsic feature of the lattice configuration. Previous results on the asynchronous cellular automata have showed that such feature really exists. It is the number of zero-one borders within the automaton's binary configuration. An exponential formula in the number of zero-one borders has been proved for the 1-D, 2-D and 3-D asynchronous automata with neighborhood three, five and seven, respectively. We perform computer experiments on a synchronous cellular automaton to check whether the empirical distribution obeys also that theoretical formula. The numerical results indicate a perfect fit for neighbourhood three and five, which opens the way for a rigorous proof of the formula in this new, synchronous case.

  1. Probabilistic cellular automata.

    PubMed

    Agapie, Alexandru; Andreica, Anca; Giuclea, Marius

    2014-09-01

    Cellular automata are binary lattices used for modeling complex dynamical systems. The automaton evolves iteratively from one configuration to another, using some local transition rule based on the number of ones in the neighborhood of each cell. With respect to the number of cells allowed to change per iteration, we speak of either synchronous or asynchronous automata. If randomness is involved to some degree in the transition rule, we speak of probabilistic automata, otherwise they are called deterministic. With either type of cellular automaton we are dealing with, the main theoretical challenge stays the same: starting from an arbitrary initial configuration, predict (with highest accuracy) the end configuration. If the automaton is deterministic, the outcome simplifies to one of two configurations, all zeros or all ones. If the automaton is probabilistic, the whole process is modeled by a finite homogeneous Markov chain, and the outcome is the corresponding stationary distribution. Based on our previous results for the asynchronous case-connecting the probability of a configuration in the stationary distribution to its number of zero-one borders-the article offers both numerical and theoretical insight into the long-term behavior of synchronous cellular automata.

  2. Cellular automata in photonic cavity arrays.

    PubMed

    Li, Jing; Liew, T C H

    2016-10-31

    We propose theoretically a photonic Turing machine based on cellular automata in arrays of nonlinear cavities coupled with artificial gauge fields. The state of the system is recorded making use of the bistability of driven cavities, in which losses are fully compensated by an external continuous drive. The sequential update of the automaton layers is achieved automatically, by the local switching of bistable states, without requiring any additional synchronization or temporal control.

  3. Individual-based and continuum models of growing cell populations: a comparison.

    PubMed

    Byrne, Helen; Drasdo, Dirk

    2009-04-01

    In this paper we compare two alternative theoretical approaches for simulating the growth of cell aggregates in vitro: individual cell (agent)-based models and continuum models. We show by a quantitative analysis of both a biophysical agent-based and a continuum mechanical model that for densely packed aggregates the expansion of the cell population is dominated by cell proliferation controlled by mechanical stress. The biophysical agent-based model introduced earlier (Drasdo and Hoehme in Phys Biol 2:133-147, 2005) approximates each cell as an isotropic, homogeneous, elastic, spherical object parameterised by measurable biophysical and cell-biological quantities and has been shown by comparison to experimental findings to explain the growth patterns of dense monolayers and multicellular spheroids. Both models exhibit the same growth kinetics, with initial exponential growth of the population size and aggregate diameter followed by linear growth of the diameter and power-law growth of the cell population size. Very sparse monolayers can be explained by a very small or absent cell-cell adhesion and large random cell migration. In this case the expansion speed is not controlled by mechanical stress but by random cell migration and can be modelled by the Fisher-Kolmogorov-Petrovskii-Piskounov (FKPP) reaction-diffusion equation. The growth kinetics differs from that of densely packed aggregates in that the initial spread, as quantified by the radius of gyration, is diffusive. Since simulations of the lattice-free agent-based model in the case of very large random migration are too long to be practical, lattice-based cellular automaton (CA) models have to be used for a quantitative analysis of sparse monolayers. Analysis of these dense monolayers leads to the identification of a critical parameter of the CA model so that eventually a hierarchy of three model types (a detailed biophysical lattice-free model, a rule-based cellular automaton and a continuum approach

  4. Physical modeling of traffic with stochastic cellular automata

    SciTech Connect

    Schreckenberg, M.; Nagel, K. |

    1995-09-01

    A new type of probabilistic cellular automaton for the physical description of single and multilane traffic is presented. In this model space, time and the velocity of the cars are represented by integer numbers (as usual in cellular automata) with local update rules for the velocity. The model is very efficient for both numerical simulations and analytical investigations. The numerical results from extensive simulations reproduce very well data taken from real traffic (e.g. fundamental diagrams). Several analytical results for the model are presented as well as new approximation schemes for stationary traffic. In addition the relation to continuum hydrodynamic theory (Lighthill-Whitham) and the follow-the-leader models is discussed. The model is part of an interdisciplinary research program in Northrhine-Westfalia (``NRW Forschungsverbund Verkehrssimulation``) for the construction of a large scale microsimulation model for network traffic, supported by the government of NRW.

  5. The wetland continuum: a conceptual framework for interpreting biological studies

    USGS Publications Warehouse

    Euliss, N.H.; LaBaugh, J.W.; Fredrickson, L.H.; Mushet, D.M.; Swanson, G.A.; Winter, T.C.; Rosenberry, D.O.; Nelson, R.D.

    2004-01-01

    We describe a conceptual model, the wetland continuum, which allows wetland managers, scientists, and ecologists to consider simultaneously the influence of climate and hydrologic setting on wetland biological communities. Although multidimensional, the wetland continuum is most easily represented as a two-dimensional gradient, with ground water and atmospheric water constituting the horizontal and vertical axis, respectively. By locating the position of a wetland on both axes of the continuum, the potential biological expression of the wetland can be predicted at any point in time. The model provides a framework useful in the organization and interpretation of biological data from wetlands by incorporating the dynamic changes these systems undergo as a result of normal climatic variation rather than placing them into static categories common to many wetland classification systems. While we developed this model from the literature available for depressional wetlands in the prairie pothole region of North America, we believe the concept has application to wetlands in many other geographic locations.

  6. Water vapor continuum in the millimeter spectral region

    NASA Astrophysics Data System (ADS)

    Ma, Q.; Tipping, R. H.

    1990-11-01

    Continuum absorption by water molecules in the millimeter spectral region of the earth's atmosphere, a region very important for atmospheric remote sensing, electro-optical systems, radar propagation, and atmospheric meteorology, is discussed. Theoretical expressions for the absorption coefficient for frequencies up to 450 GHz and temperatures between 282 and 315 K are derived. Known values of the permanent dipole moment and rotational constants and reasonable choices for two Lennard-Jones potential parameters are used to describe the isotropic interaction between two water molecules. The results are in agreement with an empirical model for the water continuum based on combined laboratory and atmospheric measurements. It is concluded that both the strong negative temperature dependence and the magnitude of the continuum absorption can be explained in terms of far-wings of the allowed rotational transitions.

  7. Lattice fluid dynamics from perfect discretizations of continuum flows

    SciTech Connect

    Katz, E.; Wiese, U.

    1998-11-01

    We use renormalization group methods to derive equations of motion for large scale variables in fluid dynamics. The large scale variables are averages of the underlying continuum variables over cubic volumes and naturally exist on a lattice. The resulting lattice dynamics represents a perfect discretization of continuum physics, i.e., grid artifacts are completely eliminated. Perfect equations of motion are derived for static, slow flows of incompressible, viscous fluids. For Hagen-Poiseuille flow in a channel with a square cross section the equations reduce to a perfect discretization of the Poisson equation for the velocity field with Dirichlet boundary conditions. The perfect large scale Poisson equation is used in a numerical simulation and is shown to represent the continuum flow exactly. For nonsquare cross sections one can use a numerical iterative procedure to derive flow equations that are approximately perfect. {copyright} {ital 1998} {ital The American Physical Society}

  8. Micropolar continuum modelling of bi-dimensional tetrachiral lattices

    PubMed Central

    Chen, Y.; Liu, X. N.; Hu, G. K.; Sun, Q. P.; Zheng, Q. S.

    2014-01-01

    The in-plane behaviour of tetrachiral lattices should be characterized by bi-dimensional orthotropic material owing to the existence of two orthogonal axes of rotational symmetry. Moreover, the constitutive model must also represent the chirality inherent in the lattices. To this end, a bi-dimensional orthotropic chiral micropolar model is developed based on the theory of irreducible orthogonal tensor decomposition. The obtained constitutive tensors display a hierarchy structure depending on the symmetry of the underlying microstructure. Eight additional material constants, in addition to five for the hemitropic case, are introduced to characterize the anisotropy under Z2 invariance. The developed continuum model is then applied to a tetrachiral lattice, and the material constants of the continuum model are analytically derived by a homogenization process. By comparing with numerical simulations for the discrete lattice, it is found that the proposed continuum model can correctly characterize the static and wave properties of the tetrachiral lattice. PMID:24808754

  9. Mechanics of low-dimensional carbon nanostructures: Atomistic, continuum, and multi-scale approaches

    NASA Astrophysics Data System (ADS)

    Mahdavi, Arash

    nanotubes and carbon nanocones subject to different loadings and boundary conditions. This finite element technique is also used to study the natural frequencies of low-dimensional carbon nanostructures and comparing the results with those of a homogenized isotropic continuum shell. Conclusion is that, replacing the atomic lattice with an isotropic continuum shell for a graphene sheet does not significantly affect the vibration frequencies while in the case of carbon nanotubes and carbon nanocones there is a significant difference between the natural frequencies of the atomistic model and its continuum counterpart. In the case of the carbon nanotube, continuum model successfully captures the beam bending vibration modes while overestimating frequencies of the modes in which the cross-section undergoes significant deformation. Furthermore, in the case of carbon nanotubes, the continuum shell exhibits a torsional mode which appears to be an artifact resulting from the small nominal thickness typically used in the continuum shell approximation of these nanostructures. Results of this study indicate that isotropic continuum shell models, while simple and useful in static analysis, cannot accurately predict the vibration frequencies of these nanostructures. We have studied the bistable nature of single-walled carbon nanotubes by investigating the change in the tube's energy as it is compressed between flat rigid indenters of various widths. Assuming the nanotube deformed uniformly along its length and modeling the cross-section as an inextensible, non-linear beam we found that tubes with a radius greater than 12 A are bistable and that tubes with a radius greater than 25 A have a lower energy in the collapsed state than in the inflated state. The difference in energy between the collapsed and inflated states decreases nearly linearly with increasing tube radius. While the inflated state remains stable for tubes of all diameters, the energy barrier keeping the tube from

  10. 24 CFR 91.110 - Consultation; states.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... of homelessness, the State must consult with: (1) Each Continuum of Care within the state; (2) Public... systems of care that may discharge persons into homelessness (such as health-care facilities,...

  11. 24 CFR 91.110 - Consultation; States.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... of homelessness, the State must consult with: (1) Each Continuum of Care within the state; (2) Public... systems of care that may discharge persons into homelessness (such as health-care facilities,...

  12. 24 CFR 91.110 - Consultation; States.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... of homelessness, the State must consult with: (1) Each Continuum of Care within the state; (2) Public... systems of care that may discharge persons into homelessness (such as health-care facilities,...

  13. The High-energy Continuum Emission of the Gamma-Ray Blazar PKS 0528+134

    NASA Technical Reports Server (NTRS)

    Sambruna, Rita M.; Urry, C. Megan; Maraschi, L.; Ghisellini, G.; Mukherjee, R.; Pesce, Joseph E.; Wagner, S. J.; Wehrle, A. E.; Hartman, R. C.; Lin, Y. C.; VonMintigny, C.

    1997-01-01

    We present Advanced Satellite for Cosmology and Astrophysics (ASCA) observations of the gamma-ray blazar PKS 0528 + 134, obtained at two separate epochs in 1994 August and 1995 March. These data represent the first measurement of the X-ray continuum emission of this source in the medium-hard X-ray band. Both ASCA spectra are consistent with a single power law with photon index GAMMA approx. = 1.7-1.8 and column density N(sub H) approx. = 5 x 10(exp 21)/ sq cm, higher than Galactic. The X-ray flux increased by a factor of 4 in approx. 7 months without appreciable change of the spectral shape. During the lower state of 1994 August, PKS 0528 + 134 was observed simultaneously in the optical, X-rays, and at gamma-ray energies with Energetic Gamma Ray Experiment Telescope (EGRET). The gamma-ray intensity is the faintest detected thus far in the source, with a steep spectrum (GAMMA approx. = 2.7). The extrapolation of the X-ray continuum to the gamma-ray range requires a sharp spectral break at approx. 10(exp 22) Hz. We discuss the radio through gamma-ray spectral energy distribution of PKS 0528 + 134, comparing the low state of 1994 August with the flare state of 1993 March. We show that in PKS 0528 + 134, a non-negligible contribution from the external radiation field is present and that, although synchrotron self-Compton scenarios cannot be ruled out, inverse Compton upscattering of thermal seed photons may be the dominant cooling process for the production of the high-energy continuum in this blazar.

  14. The High-Energy Continuum Emission of the Gamma-Ray Blazar PKS 0528+134

    NASA Technical Reports Server (NTRS)

    Sambruna, Rita M.; Urry, C. Megan; Maraschi, L.; Ghisellini, G.; Mukherjee, R.; Pesce, Joseph E.; Wagner, S. J.; Wehrle, A. E.; Hartman, R. C.; Lin, Y. C.

    1997-01-01

    We present Advanced Satellite for Cosmology and Astrophysics (ASCA) observations of the gamma-ray blazar PKS 0528 + 134, obtained at two separate epochs in 1994 August and 1995 March. These data represent the first measurement of the X-ray continuum emission of this source in the medium-hard X-ray band. Both ASCA spectra are consistent with a single power law with photon index GAMMA approximate 1.7-1.8 and column density N(sub H) approximately 5 x 10(exp 21) /sq cm, higher than Galactic. The X-ray flux increased by a factor of 4 in approximately 7 months without appreciable change of the spectral shape. During the lower state of 1994 August, PKS 0528 + 134 was observed simultaneously in the optical, X-rays, and at gamma-ray energies with EGRET. The gamma-ray intensity is the faintest detected thus far in the source, with a steep spectrum (GAMMA approximately 2.7). The extrapolation of the X-ray continuum to the gamma-ray range requires a sharp spectral break at approximately 10(exp 22) Hz. We discuss the radio through gamma-ray spectral energy distribution of PKS 0528 + 134, comparing the low state of 1994 August with the flare state of 1993 March. We show that in PKS 0528 + 134, a non-negligible contribution from the external radiation field is present and that, although synchrotron self-Compton scenarios cannot be ruled out, inverse Compton upscattering of thermal seed photons may be the dominant cooling process for the production of the high-energy continuum in this blazar.

  15. Continuum Polarizable Force Field within the Poisson-Boltzmann Framework

    PubMed Central

    Tan, Yu-Hong; Tan, Chunhu; Wang, Junmei; Luo, Ray

    2008-01-01

    We have developed and tested a complete set of nonbonded parameters for a continuum polarizable force field. Our analysis shows that the new continuum polarizable model is consistent with B3LYP/cc-pVTZ in modeling electronic response upon variation of dielectric environment. Comparison with experiment also shows that the new continuum polarizable model is reasonable, with similar accuracy as B3LYP/cc-pVTZ in reproduction of dipole moments of selected organic molecules in the gas phase. We have further tested the validity to interchange the Amber van der Waals parameters between the explicit and continuum polarizable force fields with a series of dimers. It can be found that the continuum polarizable model agrees well with MP2/cc-pVTZ, with deviations in dimer binding energies less than 0.9 kcal/mol in the aqueous dielectric environment. Finally we have optimized atomic cavity radii with respect to experimental solvation free energies of 177 training molecules. To validate the optimized cavity radii, we have tested these parameters against 176 test molecules. It is found that the optimized PB atomic cavity radii transfer well from the training set to the test set, with an overall root-mean-squared deviation of 1.30 kcal/mol, unsigned average error of 1.07 kacl/mol, and correlation coefficient of 92% for all 353 molecules in both the training and test sets. Given the development documented here, the next natural step is the construction of a full protein/nucleic acid force field within the new continuum polarization framework. PMID:18507452

  16. Cellular senescence: when bad things happen to good cells.

    PubMed

    Campisi, Judith; d'Adda di Fagagna, Fabrizio

    2007-09-01

    Cells continually experience stress and damage from exogenous and endogenous sources, and their responses range from complete recovery to cell death. Proliferating cells can initiate an additional response by adopting a state of permanent cell-cycle arrest that is termed cellular senescence. Understanding the causes and consequences of cellular senescence has provided novel insights into how cells react to stress, especially genotoxic stress, and how this cellular response can affect complex organismal processes such as the development of cancer and ageing.

  17. Capillarity-driven flows at the continuum limit

    NASA Astrophysics Data System (ADS)

    Vincent, Olivier; Szenicer, Alexandre; Stroock, Abraham D.

    We experimentally investigate the dynamics of capillary-driven flows at the nanoscale, using an original platform that combines nanoscale pores and microfluidic features. Our results show a coherent picture across multiple experiments including imbibition, poroelastic transient flows, and a drying-based method that we introduce. In particular, we exploit extreme drying stresses - up to 100 MPa of tension - to drive nanoflows and provide quantitative tests of continuum theories of fluid mechanics and thermodynamics (e.g. Kelvin-Laplace equation) across an unprecedented range. We isolate the breakdown of continuum as a negative slip length of molecular dimension.

  18. Continuum Theory of Phase Separation Kinetics for Active Brownian Particles

    NASA Astrophysics Data System (ADS)

    Stenhammar, Joakim; Tiribocchi, Adriano; Allen, Rosalind J.; Marenduzzo, Davide; Cates, Michael E.

    2013-10-01

    Active Brownian particles (ABPs), when subject to purely repulsive interactions, are known to undergo activity-induced phase separation broadly resembling an equilibrium (attraction-induced) gas-liquid coexistence. Here we present an accurate continuum theory for the dynamics of phase-separating ABPs, derived by direct coarse graining, capturing leading-order density gradient terms alongside an effective bulk free energy. Such gradient terms do not obey detailed balance; yet we find coarsening dynamics closely resembling that of equilibrium phase separation. Our continuum theory is numerically compared to large-scale direct simulations of ABPs and accurately accounts for domain growth kinetics, domain topologies, and coexistence densities.

  19. Manipulability, force, and compliance analysis for planar continuum manipulators.

    PubMed

    Gravagne, Ian A; Walker, Ian D

    2002-06-01

    Continuum manipulators, inspired by the natural capabilities of elephant trunks and octopus tentacles, may find niche applications in areas like human-robot interaction, multiarm manipulation, and unknown environment exploration. However, their true capabilities will remain largely inaccessible without proper analytical tools to evaluate their unique properties. Ellipsoids have long served as one of the foremost analytical tools available to the robotics researcher, and the purpose of this paper is to first formulate, and then to examine, three types of ellipsoids for continuum robots: manipulability, force, and compliance.

  20. Diffuse Galactic low energy gamma ray continuum emission

    NASA Technical Reports Server (NTRS)

    Skibo, J. G.; Ramaty, R.

    1993-01-01

    We investigate the origin of diffuse low-energy Galactic gamma-ray continuum down to about 30 keV. We calculate gamma-ray emission via bremsstrahlung and inverse Compton scattering by propagating an unbroken electron power law injection spectrum and employing a Galactic emmissivity model derived from COSB observations. To maintain the low energy electron population capable of producing the observed continuum via bremsstrahlung, a total power input of 4 x 10 exp 41 erg/s is required. This exceeds the total power supplied to the nuclear cosmic rays by about an order of magnitude.

  1. On the continuum limit for a semidiscrete Hirota equation.

    PubMed

    Pickering, Andrew; Zhao, Hai-Qiong; Zhu, Zuo-Nong

    2016-11-01

    In this paper, we propose a new semidiscrete Hirota equation which yields the Hirota equation in the continuum limit. We focus on the topic of how the discrete space step δ affects the simulation for the soliton solution to the Hirota equation. The Darboux transformation and explicit solution for the semidiscrete Hirota equation are constructed. We show that the continuum limit for the semidiscrete Hirota equation, including the Lax pair, the Darboux transformation and the explicit solution, yields the corresponding results for the Hirota equation as [Formula: see text].

  2. Manipulability, force, and compliance analysis for planar continuum manipulators

    NASA Technical Reports Server (NTRS)

    Gravagne, Ian A.; Walker, Ian D.

    2002-01-01

    Continuum manipulators, inspired by the natural capabilities of elephant trunks and octopus tentacles, may find niche applications in areas like human-robot interaction, multiarm manipulation, and unknown environment exploration. However, their true capabilities will remain largely inaccessible without proper analytical tools to evaluate their unique properties. Ellipsoids have long served as one of the foremost analytical tools available to the robotics researcher, and the purpose of this paper is to first formulate, and then to examine, three types of ellipsoids for continuum robots: manipulability, force, and compliance.

  3. FUV Continuum in Flare Kernels Observed by IRIS

    NASA Astrophysics Data System (ADS)

    Daw, Adrian N.; Kowalski, Adam; Allred, Joel C.; Cauzzi, Gianna

    2016-05-01

    Fits to Interface Region Imaging Spectrograph (IRIS) spectra observed from bright kernels during the impulsive phase of solar flares are providing long-sought constraints on the UV/white-light continuum emission. Results of fits of continua plus numerous atomic and molecular emission lines to IRIS far ultraviolet (FUV) spectra of bright kernels are presented. Constraints on beam energy and cross sectional area are provided by cotemporaneous RHESSI, FERMI, ROSA/DST, IRIS slit-jaw and SDO/AIA observations, allowing for comparison of the observed IRIS continuum to calculations of non-thermal electron beam heating using the RADYN radiative-hydrodynamic loop model.

  4. Improving the Capabilities of a Continuum Laser Plasma Interaction Code

    SciTech Connect

    Hittinger, J F; Dorr, M R

    2006-06-15

    The numerical simulation of plasmas is a critical tool for inertial confinement fusion (ICF). We have been working to improve the predictive capability of a continuum laser plasma interaction code pF3d, which couples a continuum hydrodynamic model of an unmagnetized plasma to paraxial wave equations modeling the laser light. Advanced numerical techniques such as local mesh refinement, multigrid, and multifluid Godunov methods have been adapted and applied to nonlinear heat conduction and to multifluid plasma models. We describe these algorithms and briefly demonstrate their capabilities.

  5. Doing Away with Occupation Probability: A New Way to Model Continuum Lowering at White Dwarf Photosphere Conditions

    NASA Astrophysics Data System (ADS)

    Gomez, Thomas A.; Winget, Donald E.; Montgomery, Michael H.; Kilcrease, Dave; Nagayama, Taisuke

    2016-01-01

    White dwarfs are interesting for a number of applications including studying equations of state, stellar pulsations, and determining the age of the universe.These interesting applications require accurate determination of surface conditions: temperatures and surface gravity (or mass).The most common technique to estimate the temperature and gravity is to find the model spectrun that best fits the observed spectra of a star (known as the spectroscopic method); however, this model rests on our ability to accurately model the hydrogen spectrum at high densities.There are currently disagreements between the spectroscopic method and other techniques to determine mass.We seek to resolve this issue by exploring the continuum lowering (or disappearance of states) of the hydrogen atom.The current formalism, called "occupation probability," defines some criteria for the isolated atom's bound state to be ionized, then extrapolates the continuous spectrum to the same energy threshold.The two are then combined to create the final cross-section.I introduce a new way of calculating the atomic spectrum by doing some averaging of the plasma interaction potential energy (previously used in the physics community) and directly integrating the Schrodinger equation.This technique is a major improvement over the Taylor expansion used to describe the ion-emitter interaction and removes the need of the occupation probability and treats continuum states and discrete states on the same footing in the spectrum calculation.The resulting energy spectrum is in fact many discrete states that when averaged over the electric field distribution in the plasma appears to be a continuum.In the low density limit, the two methods are in agreement, but show some differences at high densities (above 10$^{17} e/cc$) including line shifts near the ``continuum'' edge.

  6. Coexistence and Coupling of Zero-Dimensional, Two-Dimensional and Continuum Resonances in Nanostructures

    SciTech Connect

    Popescu, V.; Bester, G.; Zunger, A.

    2009-01-01

    Quantum dots (QDs) embedded in a matrix exhibit a coexistence of 'zero-dimensional' (0D) bound electron and hole states on the dot with 'three-dimensional' (3D) continuum states of the surrounding matrix. In epitaxial QDs one encounters also 'two-dimensional' (2D) states of a quantum well-like supporting structure (wetting layer). This coexistence of 0D, 2D, and 3D states leads to interesting electronic consequences explored here using multiband atomistic pseudopotential calculations. We distinguish strained dots (InAs in GaAs) and strain-free dots (InAs in GaSb) finding crucial differences: in the former case 'potential wings' appear in the electron confining potential in the vicinity of the dot. This results in the appearance of localized electronic states that lie above the threshold of the 3D continuum. Such resonances are 'strain-induced localized states' (SILSs) appearing in strained systems, whereas in strain-free systems the dot resonances in the continuum are the usual 'virtual bound states' (VBSs). The SILSs were found to occur regardless of the thickness of the wetting layer and even in interdiffused dots, provided that the interdiffusion length is small compared to the QD size. Thus, the SILSs are well isolated from the environment by the protective potential wings, whereas the VBSs are strongly interacting. These features are seen in our calculated intraband as well as interband absorption spectra. Furthermore, we show that the local barrier created around the dot by these potential wings suppresses the 0D-2D (dot-wetting layer) hybridization of the electron states. Consequently, in contrast to findings of simple model calculations of envelope function, 0D-to-2D 'crossed transitions' (bound hole-to-wetting layer electron) are practically absent because of their spatially indirect character. On the other hand, since no such barrier exists in the hole confining potential, a strong 0D-2D hybridization is present for the hole states. We show this to be the

  7. A continuum of sociotechnical requirements for patient-centered problem lists.

    PubMed

    Collins, Sarah; Tsivkin, Kira; Hongsermeier, Tonya; Dubois, David; Nandigam, Hari Krishna; Rocha, Roberto A

    2013-01-01

    Specific requirements for patient-centered health information technology remain ill-defined. To create operational definitions of patient-centered problem lists, we propose a continuum of sociotechnical requirements with five stages: 1) Intradisciplinary Care Planning: Viewing and searching for problems by discipline; 2) Multi-disciplinary Care Planning: Categorizing problem states to meet discipline-specific needs; 3) Interdisciplinary Care Planning: Sharing and linking problems between disciplines; 4) Integrated and Coordinated Care Planning: Associating problems with assessments, tasks, interventions and outcomes across disciplines for coordination, knowledge development, and reporting; and 5) Patient-Centered Care Planning: Engaging patients in identification of problems and maintenance of their problem list.

  8. The Development of an Educational Continuum to Meet Agricultural Workforce Needs

    SciTech Connect

    Burleson, Sarah; Rubenstein, Eric; Thoron, Andrew; Hanlon, Edward

    2012-02-07

    The poster explains the basic issues of a development of an educational continuum to meet agricultural workforce needs of Hendry County. The community needs include primarily jobs within the community, training of local biofuels workforce, education for profession-bound students, services for biofuels entrepreneurs, private farming system alternatives and an improvement of overall education system. These needs are to be met in Hendry County on various levels by its secondary education institutions, Edison State College and University of Florida. Each of these parties has a specific role in the overall education and training process, while the outcome of each is a local educated and trained workforce.

  9. Fundamental Limits to Cellular Sensing

    NASA Astrophysics Data System (ADS)

    ten Wolde, Pieter Rein; Becker, Nils B.; Ouldridge, Thomas E.; Mugler, Andrew

    2016-03-01

    In recent years experiments have demonstrated that living cells can measure low chemical concentrations with high precision, and much progress has been made in understanding what sets the fundamental limit to the precision of chemical sensing. Chemical concentration measurements start with the binding of ligand molecules to receptor proteins, which is an inherently noisy process, especially at low concentrations. The signaling networks that transmit the information on the ligand concentration from the receptors into the cell have to filter this receptor input noise as much as possible. These networks, however, are also intrinsically stochastic in nature, which means that they will also add noise to the transmitted signal. In this review, we will first discuss how the diffusive transport and binding of ligand to the receptor sets the receptor correlation time, which is the timescale over which fluctuations in the state of the receptor, arising from the stochastic receptor-ligand binding, decay. We then describe how downstream signaling pathways integrate these receptor-state fluctuations, and how the number of receptors, the receptor correlation time, and the effective integration time set by the downstream network, together impose a fundamental limit on the precision of sensing. We then discuss how cells can remove the receptor input noise while simultaneously suppressing the intrinsic noise in the signaling network. We describe why this mechanism of time integration requires three classes (groups) of resources—receptors and their integration time, readout molecules, energy—and how each resource class sets a fundamental sensing limit. We also briefly discuss the scheme of maximum-likelihood estimation, the role of receptor cooperativity, and how cellular copy protocols differ from canonical copy protocols typically considered in the computational literature, explaining why cellular sensing systems can never reach the Landauer limit on the optimal trade

  10. A continuum framework for mechanics of fractal materials I: from fractional space to continuum with fractal metric

    NASA Astrophysics Data System (ADS)

    Balankin, Alexander S.

    2015-04-01

    This paper is devoted to the mechanics of fractally heterogeneous media. A model of fractal continuum with a fractional number of spatial degrees of freedom and a fractal metric is suggested. The Jacobian matrix of the fractal continuum deformation is defined and the kinematics of deformations is elucidated. The symmetry of the Cauchy stress tensor for continua with the fractal metric is established. A homogenization framework accounting for the connectivity, topological, and metric properties of fractal domains in heterogeneous materials is developed. The mapping of mechanical problems for fractal media into the corresponding problems for the fractal continuum is discussed. Stress and strain distributions in elastic fractal bars are analyzed. An approach to fractal bar optimization is proposed. Some features of acoustic wave propagation and localization in fractal media are briefly highlighted.

  11. Low Energy Continuum and Lattice Effective Field Theories

    NASA Astrophysics Data System (ADS)

    Elhatisari, Serdar

    In this thesis we investigate several constraints and their impacts on the short-range potentials in the low-energy limits of quantum mechanics.We also present lattice Monte Carlo calculations using the adiabatic projection method. In the first part we consider the constraints of causality and unitarity for the low-energy interactions of particles. We generalize Wigner's causality bound to the case of non-vanishing partial-wave mixing. Specifically we analyze the system of the low-energy interactions between protons and neutrons. We derive a general theorem that non-vanishing partial-wave mixing cannot be reproduced with zero-range interactions without violating causality or unitarity. We also analyze low-energy scattering for systems with arbitrary short-range interactions plus an attractive 1/ralpha tail for alpha ≥ 2. In particular, we focus on the case of alpha = 6 and we derive the constraints of causality and unitarity also for these systems and find that the van derWaals length scale dominates over parameters characterizing the short-distance physics of the interaction. This separation of scales suggests a separate universality class for physics characterizing interactions with an attractive 1{r6 tail. We argue that a similar universality class exists for any attractive potential 1/ralpha for alpha ≥ 2. In the second part of the thesis we present lattice Monte Carlo calculations of fermion-dimer scattering in the limit of zero-range interactions using the adiabatic projection method. The adiabatic projection method uses a set of initial cluster states and Euclidean time projection to give a systematically improvable description of the low-lying scattering cluster states in a finite volume. We use Luscher's finite-volume relations to determine the s-wave, p-wave, and d-wave phase shifts. For comparison, we also compute exact lattice results using Lanczos iteration and continuum results using the Skorniakov-Ter-Martirosian equation. For our Monte Carlo

  12. Anti-Capture to the Continuum via a Double Collision Mechanism in (e,2e) Collisions

    NASA Astrophysics Data System (ADS)

    Ward, S. J.; Roth, E. G.; Guo, B. N.; Golden, D. E.; Mueller, D. W.

    1997-04-01

    Recently, anti-capture to the continuum occurring via the (Thomas) double collision mechanism has been reported.(D. E. Golden, J. Xu, D. W. Mueller and J. Bernhard, Nucl. Inst. and Meth. in Phys. Res. B 99) 202 (1995).^,(D. E. Golden, Z. Xu, J. Bernhard and D. W. Mueller, J. Phys. B: At. Mol. Opt. Phys. 29) 3741 (1996). The doubly differential cross section was measured in coplanar geometry for electron-impact ionization of argon at a 1000 eV incident energy. The cross section is differential with respect to the solid angle of the ejected electron and scattered electron. The detector (split anode detector) measures the two outgoing electrons at approximately the same angle. Both a sharp dip---the signature of anti-electron capture to the continuum---and the Thomas peak were observed in the cross section. We computed the doubly differential cross section for electron-impact ionization of hydrogen. This was done by including in the Bethe-Born approximation a normalization factor that approximately incorporates electron-electron interactions in the final state. We considered hydrogen both in the ground state and the 2p excited state and were able to reproduce the main features of the measurements.

  13. Continuum modelling of pedestrian flows - Part 2: Sensitivity analysis featuring crowd movement phenomena

    NASA Astrophysics Data System (ADS)

    Duives, Dorine C.; Daamen, Winnie; Hoogendoorn, Serge P.

    2016-04-01

    In recent years numerous pedestrian simulation tools have been developed that can support crowd managers and government officials in their tasks. New technologies to monitor pedestrian flows are in dire need of models that allow for rapid state-estimation. Many contemporary pedestrian simulation tools model the movements of pedestrians at a microscopic level, which does not provide an exact solution. Macroscopic models capture the fundamental characteristics of the traffic state at a more aggregate level, and generally have a closed form solution which is necessary for rapid state estimation for traffic management purposes. This contribution presents a next step in the calibration and validation of the macroscopic continuum model detailed in Hoogendoorn et al. (2014). The influence of global and local route choice on the development of crowd movement phenomena, such as dissipation, lane-formation and stripe-formation, is studied. This study shows that most self-organization phenomena and behavioural trends only develop under very specific conditions, and as such can only be simulated using specific parameter sets. Moreover, all crowd movement phenomena can be reproduced by means of the continuum model using one parameter set. This study concludes that the incorporation of local route choice behaviour and the balancing of the aptitude of pedestrians with respect to their own class and other classes are both essential in the correct prediction of crowd movement dynamics.

  14. Formin’ cellular structures

    PubMed Central

    Bogdan, Sven; Schultz, Jörg; Grosshans, Jörg

    2014-01-01

    Members of the Diaphanous (Dia) protein family are key regulators of fundamental actin driven cellular processes, which are conserved from yeast to humans. Researchers have uncovered diverse physiological roles in cell morphology, cell motility, cell polarity, and cell division, which are involved in shaping cells into tissues and organs. The identification of numerous binding partners led to substantial progress in our understanding of the differential functions of Dia proteins. Genetic approaches and new microscopy techniques allow important new insights into their localization, activity, and molecular principles of regulation. PMID:24719676

  15. Cellular mechanics and motility

    NASA Astrophysics Data System (ADS)

    Hénon, Sylvie; Sykes, Cécile

    2015-10-01

    The term motility defines the movement of a living organism. One widely known example is the motility of sperm cells, or the one of flagellar bacteria. The propulsive element of such organisms is a cilium(or flagellum) that beats. Although cells in our tissues do not have a flagellum in general, they are still able to move, as we will discover in this chapter. In fact, in both cases of movement, with or without a flagellum, cell motility is due to a dynamic re-arrangement of polymers inside the cell. Let us first have a closer look at the propulsion mechanism in the case of a flagellum or a cilium, which is the best known, but also the simplest, and which will help us to define the hydrodynamic general conditions of cell movement. A flagellum is sustained by cellular polymers arranged in semi-flexible bundles and flagellar beating generates cell displacement. These polymers or filaments are part of the cellular skeleton, or "cytoskeleton", which is, in this case, external to the cellular main body of the organism. In fact, bacteria move in a hydrodynamic regime in which viscosity dominates over inertia. The system is thus in a hydrodynamic regime of low Reynolds number (Box 5.1), which is nearly exclusively the case in all cell movements. Bacteria and their propulsion mode by flagella beating are our unicellular ancestors 3.5 billion years ago. Since then, we have evolved to form pluricellular organisms. However, to keep the ability of displacement, to heal our wounds for example, our cells lost their flagellum, since it was not optimal in a dense cell environment: cells are too close to each other to leave enough space for the flagella to accomplish propulsion. The cytoskeleton thus developed inside the cell body to ensure cell shape changes and movement, and also mechanical strength within a tissue. The cytoskeleton of our cells, like the polymers or filaments that sustain the flagellum, is also composed of semi-flexible filaments arranged in bundles, and also in

  16. Oral Cellular Neurothekeoma

    PubMed Central

    Emami, Nader; Zawawi, Faisal; Ywakim, Rania; Daniel, Sam J.

    2013-01-01

    Cellular neurothekeoma is known as a cutaneous tumor with uncertain histogenesis. Very little involvement of mucosal membrane has been reported in the literature so far. This is a case report of an intraoral lesion in a 15-years-old girl. Histopathologic evaluation showed a tumor-consists of spindle to epitheloid cells forming micronodules in a concentric whorled shape pattern. Tumor cells were positive for CD63, vimentin, and NKI-C3. Total excision was performed and no recurrence happened after 16-month followup. PMID:23691398

  17. The inquiry continuum: Science teaching practices and student performance on standardized tests

    NASA Astrophysics Data System (ADS)

    Jernnigan, Laura Jane

    Few research studies have been conducted related to inquiry-based scientific teaching methodologies and NCLB-required state testing. The purpose of this study was to examine the relationship between the strategies used by seventh-grade science teachers in Illinois and student scores on the Illinois Standards Achievement Test (ISAT) to aid in determining best practices/strategies for teaching middle school science. The literature review defines scientific inquiry by placing teaching strategies on a continuum of scientific inquiry methodologies from No Inquiry (Direct Instruction) through Authentic Inquiry. Five major divisions of scientific inquiry: structured inquiry, guided inquiry, learning cycle inquiry, open inquiry, and authentic inquiry, have been identified and described. These five divisions contain eight sub-categories: demonstrations; simple or hands-on activities; discovery learning; variations of learning cycles; problem-based, event-based, and project-based; and student inquiry, science partnerships, and Schwab's enquiry. Quantitative data were collected from pre- and posttests and surveys given to the participants: five seventh grade science teachers in four Academic Excellence Award and Spotlight Award schools and their 531 students. Findings revealed that teachers reported higher inquiry scores for themselves than for their students; the two greatest reported factors limiting teachers' use of inquiry were not enough time and concern about discipline and large class size. Although the correlation between total inquiry and mean difference of pre- and posttest scores was not statistically significant, the survey instrument indicated how often teachers used inquiry in their classes, not the type of inquiry used. Implications arose from the findings that increase the methodology debate between direction instruction and inquiry-based teaching strategies; teachers are very knowledgeable about the Illinois state standards, and various inquiry-based methods

  18. Revisiting Cardiac Cellular Composition

    PubMed Central

    Pinto, Alexander R.; Ilinykh, Alexei; Ivey, Malina J.; Kuwabara, Jill T.; D'Antoni, Michelle L.; Debuque, Ryan; Chandran, Anjana; Wang, Lina; Arora, Komal; Rosenthal, Nadia; Tallquist, Michelle D.

    2015-01-01

    Rationale Accurate knowledge of the cellular composition of the heart is essential to fully understand the changes that occur during pathogenesis and to devise strategies for tissue engineering and regeneration. Objective To examine the relative frequency of cardiac endothelial cells, hematopoietic-derived cells and fibroblasts in the mouse and human heart. Methods and Results Using a combination of genetic tools and cellular markers, we examined the occurrence of the most prominent cell types in the adult mouse heart. Immunohistochemistry revealed that endothelial cells constitute over 60%, hematopoietic-derived cells 5–10%, and fibroblasts under 20% of the non-myocytes in the heart. A refined cell isolation protocol and an improved flow cytometry approach provided an independent means of determining the relative abundance of non-myocytes. High dimensional analysis and unsupervised clustering of cell populations confirmed that endothelial cells are the most abundant cell population. Interestingly, fibroblast numbers are smaller than previously estimated, and two commonly assigned fibroblast markers, Sca-1 and CD90, underrepresent fibroblast numbers. We also describe an alternative fibroblast surface marker that more accurately identifies the resident cardiac fibroblast population. Conclusions This new perspective on the abundance of different cell types in the heart demonstrates that fibroblasts comprise a relatively minor population. By contrast, endothelial cells constitute the majority of non-cardiomyocytes and are likely to play a greater role in physiologic function and response to injury than previously appreciated. PMID:26635390

  19. Multifunctional periodic cellular metals.

    PubMed

    Wadley, Haydn N G

    2006-01-15

    Periodic cellular metals with honeycomb and corrugated topologies are widely used for the cores of light weight sandwich panel structures. Honeycombs have closed cell pores and are well suited for thermal protection while also providing efficient load support. Corrugated core structures provide less efficient and highly anisotropic load support, but enable cross flow heat exchange opportunities because their pores are continuous in one direction. Recent advances in topology design and fabrication have led to the emergence of lattice truss structures with open cell structures. These three classes of periodic cellular metals can now be fabricated from a wide variety of structural alloys. Many topologies are found to provide adequate stiffness and strength for structural load support when configured as the cores of sandwich panels. Sandwich panels with core relative densities of 2-10% and cell sizes in the millimetre range are being assessed for use as multifunctional structures. The open, three-dimensional interconnected pore networks of lattice truss topologies provide opportunities for simultaneously supporting high stresses while also enabling cross flow heat exchange. These highly compressible structures also provide opportunities for the mitigation of high intensity dynamic loads created by impacts and shock waves in air or water. By filling the voids with polymers and hard ceramics, these structures have also been found to offer significant resistance to penetration by projectiles.

  20. Cellular Array Processing Simulation

    NASA Astrophysics Data System (ADS)

    Lee, Harry C.; Preston, Earl W.

    1981-11-01

    The Cellular Array Processing Simulation (CAPS) system is a high-level image language that runs on a multiprocessor configuration. CAPS is interpretively decoded on a conventional minicomputer with all image operation instructions executed on an array processor. The synergistic environment that exists between the minicomputer and the array processor gives CAPS its high-speed throughput, while maintaining a convenient conversational user language. CAPS was designed to be both modular and table driven so that it can be easily maintained and modified. CAPS uses the image convolution operator as one of its primitives and performs this cellular operation by decomposing it into parallel image steps that are scheduled to be executed on the array processor. Among its features is the ability to observe the imagery in real time as a user's algorithm is executed. This feature reduces the need for image storage space, since it is feasible to retain only original images and produce resultant images when needed. CAPS also contains a language processor that permits users to develop re-entrant image processing subroutines or algorithms.

  1. Alternative basis functions for L sup 2 calculations on the molecular continuum. I. The basic prototype integrals

    SciTech Connect

    Fortunelli, A.; Carravetta, V. )

    1992-04-01

    Alternative square-integrable ({ital L}{sup 2}) basis functions, the oscillating Hermite Gaussian functions (OHGF's), are proposed for describing the continuum orbitals in {ital L}{sup 2} calculations on molecules. Each function is the product of a Hermite Gaussian function (HGF), which gives the proper dumping and angular factor, and a radial trigonometric function, cos({ital kr}), which describes the oscillating asymptotic behavior of a continuum orbital. Analytic expressions for the one- and two-electron integrals involving {ital s}-type OHGF's and many-center {ital s}-type HGF's are derived and their numerical implementation is discussed in detail. The present proposal of adopting a mixed basis set of OHGF's and many-center HGF's for the {ital L}{sup 2} description of bound and continuum molecular states is compared with the other types of basis functions currently employed. With respect to these, it requires a greater computational effort in the integral evaluation, but it also allows an accurate description of the electronic continuum in general polyatomic systems.

  2. Searching for the Center on the Mathematics-Science Continuum.

    ERIC Educational Resources Information Center

    Roebuck, Kay I.; Warden, Melissa A.

    1998-01-01

    The history of mathematics and science integration in American schools is a continuum which runs from math for math's sake to science for science's sake. While examples of the integration of process skills are common, integration of content is not. Presents two lessons developed around radioactive decay and efficiency. Suggests that changes in…

  3. Stability and Thermal Influences in Continuum Mechanics and Materials Science

    DTIC Science & Technology

    2007-11-02

    that maximizes the energy dissipatation . Explicit relations for the initial kink angle and the subsequent direction of propagation are given. A continuum...framework is developed for recrystallization. The driving force is the energy stored in dislocation substructures, characterized with the aid of a

  4. Three Dimensional Hybrid Continuum-Atomistic Simulations for Multiscale Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Wijesinghe, Sanith; Hornung, Richard; Garcia, Alejandro; Hadjiconstantinou, Nicolas

    2002-11-01

    An adaptive mesh and algorithmic refinement (AMAR) scheme to model multi-scale, compressible continuum-atomistic hydrodynamics is presented. The AMAR technique applies the atomistic description as the finest level of refinement in regions where the continuum description is expected to fail, such as in regions of high flow gradients and discontinous material interfaces. In the current implementation the atomistic description is provided by the direct simulation Monte Carlo (DSMC). The continuum flow is modeled using the compressible flow Euler equations and is solved using a second order Godunov scheme. Coupling is achieved by conservation of fluxes across the continuum-atomistic grid boundaries. The AMAR data structures are supported by a C++ object oriented framework (Structured Adaptive Mesh Refinement Application Infrastructure - SAMRAI) which allows for efficient parallel implementation. Current work is focused on extending AMAR to simulations of gas mixtures. This work was performed under the auspices of the U.S. Department of Energy by University of California Lawrence Livermore National Laboratory under contract number W-7405-Eng-48.

  5. Mixed Feelings: Towards a Continuum of Inclusive Pedagogies

    ERIC Educational Resources Information Center

    Wilde, Alison; Avramidis, Elias

    2011-01-01

    This paper presents approaches to inclusion taken by primary teachers and discusses the institutional contexts in which these are located. Focusing on the development of enabling practices for the inclusion of children accredited with "special educational needs" (SEN), a continuum of approaches is identified, ranging from inclusive to…

  6. Evaluation as a Process: The Formative-Summative Continuum.

    ERIC Educational Resources Information Center

    Caudle, Sharon L.

    Rather than automatically presuming explicit conditions exist when designing an evaluation to fit the summative or formative mold, evaluators should think of an evaluation design as fitting between endpoints on an evaluation process continuum. Evaluators can blend techniques from both the formative and summative evaluation, matching actual program…

  7. 24 CFR 578.5 - Establishing the Continuum of Care.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... geographic area to carry out the duties of this part. Relevant organizations include nonprofit homeless..., universities, affordable housing developers, law enforcement, and organizations that serve veterans and homeless and formerly homeless individuals. (b) The board. The Continuum of Care must establish a board...

  8. 24 CFR 578.5 - Establishing the Continuum of Care.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... geographic area to carry out the duties of this part. Relevant organizations include nonprofit homeless..., universities, affordable housing developers, law enforcement, and organizations that serve veterans and homeless and formerly homeless individuals. (b) The board. The Continuum of Care must establish a board...

  9. Continuum estimates of rotational dielectric friction and polar solvation

    SciTech Connect

    Maroncelli, M.

    1997-01-01

    Dynamical solvation data recently obtained with the probe solute coumarin 153 are used to test the reliability of dielectric continuum models for estimating dielectric friction effects. In particular, the predictions of the Nee{endash}Zwanzig theory of rotational dielectric friction are examined in some detail. The analysis undertaken here uncovers an error made in virtually all previous applications of the Nee{endash}Zwanzig formalism. The error involves neglect of the solvent{close_quote}s electronic polarizability when calculating dielectric friction constants. In highly polar solvents the effect of this neglect is shown to be minor, so that the results of past studies should not be appreciably altered. However, in weakly polar and especially in nondipolar solvents, the proper inclusion of electronic polarizability terms is essential. The equivalence between the Nee{endash}Zwanzig theory of dielectric friction and more general continuum treatments of polar solvation dynamics is also demonstrated. This equivalence enables the use of solvation data to test the reliability of the Nee{endash}Zwanzig description of electrical interactions between a solute and solvent that form the core of this and related continuum theories of dielectric friction. Comparisons to experimental data show that, with the important exception of nondipolar solvents, such continuum treatments provide reasonably accurate ({plus_minus}40{percent}) predictors of time-dependent solvation and/or dielectric friction. {copyright} {ital 1997 American Institute of Physics.}

  10. Continuum approximations of individual-based models for epithelial monolayers.

    PubMed

    Fozard, J A; Byrne, H M; Jensen, O E; King, J R

    2010-03-01

    This work examines a 1D individual-based model (IBM) for a system of tightly adherent cells, such as an epithelial monolayer. Each cell occupies a bounded region, defined by the location of its endpoints, has both elastic and viscous mechanical properties and is subject to drag generated by adhesion to the substrate. Differential-algebraic equations governing the evolution of the system are obtained from energy considerations. This IBM is then approximated by continuum models (systems of partial differential equations) in the limit of a large number of cells, N, when the cell parameters vary slowly in space or are spatially periodic (and so may be heterogeneous, with substantial variation between adjacent cells). For spatially periodic cell properties with significant cell viscosity, the relationship between the mean cell pressure and length for the continuum model is found to be history dependent. Terms involving convective derivatives, not normally included in continuum tissue models, are identified. The specific problem of the expansion of an aggregate of cells through cell growth (but without division) is considered in detail, including the long-time and slow-growth-rate limits. When the parameters of neighbouring cells vary slowly in space, the O(1/N(2)) error in the continuum approximation enables this approach to be used even for modest values of N. In the spatially periodic case, the neglected terms are found to be O(1/N). The model is also used to examine the acceleration of a wound edge observed in wound-healing assays.

  11. Rape nitrogen nutrition diagnosis using continuum-removed hyperspectral reflectance

    NASA Astrophysics Data System (ADS)

    Zhang, Xuehong; Tian, Qingjiu

    2008-12-01

    The hyperspectral reflectance for rape fresh leaves and data of chlorophyll and total nitrogen content were acquired in primary growth stages under different nitrogen levels in order to monitor rape status and diagnose nitrogen using remote sensing method. A new method was developed for estimating the nitrogen nutrition of rape using continuum-removed method, which generally used in spectral analysis on rock and mineral. Based on the continuum-removed treatment and the correlation between absorption feature parameters and total nitrogen content of fresh leaves, results show that reflectance at the visible region decreased with increasing in the nitrogen fertilization, and continuum-removed operation can magnify the subtle difference in spectral absorption characteristics arose from the nitrogen stress on rape. During the seeding stage, bud-emerging stage and flowering stage of rape, total area of absorption peak, area left of the absorption peak and area right of the absorption peak in 550-750 nm region increased with increasing in the nitrogen fertilization, but it was opposite for the area-normalized maximal absorption depth. The correlation analysis indicated that it is at seeding stage that the relation between absorption characteristics parameters and leaf total nitrogen was best close. The research demonstrated that continuum-removed method is a feasible method for quantificational evaluation of rape nitrogen nutrition, and the seeding stage of rape is the best stage for assessment of rape nitrogen nutrition based on absorption characteristics of fresh leaves.

  12. Levels of Mental Health Continuum and Personality Traits

    ERIC Educational Resources Information Center

    Joshanloo, Mohsen; Nosratabadi, Masoud

    2009-01-01

    Empirically, mental health and mental illness are not opposite ends of a single measurement continuum. In view of this fact, Keyes ("J Health Soc Behav," 43:207-202, 2002) operationalizes mental health as a syndrome of symptoms of both positive feelings (emotional well-being) and positive functioning (psychological and social well-being)…

  13. Predicting Eating Disorder Continuum Groups: Hardiness and College Adjustment.

    ERIC Educational Resources Information Center

    Simon-Boyd, Gail D.; Bieschke, Kathleen J.

    This study examined relationships between hardiness, college adjustment (academic adjustment, social adjustment, personal-emotional adjustment, institutional attachment) and eating disorder (ED) continuum categories in 122 female and 20 male college students. Students who exhibited a higher level of personal-emotional adjustment (PEA) to college…

  14. 48 CFR 15.101 - Best value continuum.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 48 Federal Acquisition Regulations System 1 2010-10-01 2010-10-01 false Best value continuum. 15.101 Section 15.101 Federal Acquisition Regulations System FEDERAL ACQUISITION REGULATION CONTRACTING METHODS AND CONTRACT TYPES CONTRACTING BY NEGOTIATION Source Selection Processes and Techniques...

  15. Modes of interconnected lattice trusses using continuum models, part 1

    NASA Technical Reports Server (NTRS)

    Balakrishnan, A. V.

    1991-01-01

    This represents a continuing systematic attempt to explore the use of continuum models--in contrast to the Finite Element Models currently universally in use--to develop feedback control laws for stability enhancement of structures, particularly large structures, for deployment in space. We shall show that for the control objective, continuum models do offer unique advantages. It must be admitted of course that developing continuum models for arbitrary structures is no easy task. In this paper we take advantage of the special nature of current Large Space Structures--typified by the NASA-LaRC Evolutionary Model which will be our main concern--which consists of interconnected orthogonal lattice trusses each with identical bays. Using an equivalent one-dimensional Timoshenko beam model, we develop an almost complete continuum model for the evolutionary structure. We do this in stages, beginning only with the main bus as flexible and then going on to make all the appendages also flexible-except for the antenna structure. Based on these models we proceed to develop formulas for mode frequencies and shapes. These are shown to be the roots of the determinant of a matrix of small dimension compared with mode calculations using Finite Element Models, even though the matrix involves transcendental functions. The formulas allow us to study asymptotic properties of the modes and how they evolve as we increase the number of bodies which are treated as flexible. The asymptotics, in fact, become simpler.

  16. JCMT COADD: UKT14 continuum and photometry data reduction

    NASA Astrophysics Data System (ADS)

    Hughes, David; Oliveira, Firmin J.; Tilanus, Remo P. J.; Jenness, Tim

    2014-11-01

    COADD was used to reduce photometry and continuum data from the UKT14 instrument on the James Clerk Maxwell Telescope in the 1990s. The software can co-add multiple observations and perform sigma clipping and Kolmogorov-Smirnov statistical analysis. Additional information on the software is available in the JCMT Spring 1993 newsletter (large PDF).

  17. Hα Emission vs. Continuum Variability of MWC349A

    NASA Astrophysics Data System (ADS)

    Schwarz, Kamber R.; Strelnitski, V.; Walker, G.

    2011-01-01

    We report on a three-year CCD monitoring of MWC349A at the Maria Mitchell Observatory with narrowband and broadband filters. The use of three narrowband filters centered on Hα and adjacent continuum allowed us to separate, for the first time, the variability of this object’s Hα emission from that of the continuum. We detected a general anticorrelation of Hα emission with its nearby continuum and, tentatively, periodic variations of the Hα flux with a period of 223±7 days and a peak-to-peak amplitude of ≈6%. This period is close to the supposed period of 238±8 days for the variations of the peak ratio of the double-peak spectrum of the masing H30α line (Fuchs et al. 2010). More observations, both in the optical and radio domains, are needed to verify these new phenomena. We briefly discuss possible causes of the periodicity and the anticorrelation between the Hα emission and continuum. This project was supported by NSF/REU grant AST-0851892 and the Nantucket Maria Mitchell Association.

  18. Online Learning Interaction Continuum (OLIC): A Qualitative Case Study

    ERIC Educational Resources Information Center

    Hashim, Mohamad Hisyam Mohd.; Hashim, Yusup; Esa, Ahmad

    2011-01-01

    The purpose of this research project is to explore the use of Blackboard Learning System (BLS) in enhancing interaction in online teaching and learning enviornment. This paper discusses the conceptual framework of Online Learning Interaction Continuum (OLIC) which explains the five levels of interactions. The OLIC was conceptualized as a result of…

  19. The Eating Disorders Continuum, Self-Esteem, and Perfectionism

    ERIC Educational Resources Information Center

    Peck, Lisa D.; Lightsey, Owen Richard

    2008-01-01

    Among 261 undergraduate women, increased severity of eating disorders along a continuum was associated with decreased self-esteem, increased perfectionism, and increased scores on 7 subscales of the Eating Disorders Inventory-2. Women with eating disorders differed from both symptomatic women and asymptomatic women on all variables, whereas…

  20. Assessing continuum postulates in simulations of granular flow

    SciTech Connect

    Rycroft, Chris; Kamrin, Ken; Bazant, Martin

    2008-08-26

    Continuum mechanics relies on the fundamental notion of a mesoscopic volume"element" in which properties averaged over discrete particles obey deterministic relationships. Recent work on granular materials suggests a continuum law may be inapplicable, revealing inhomogeneities at the particle level, such as force chains and slow cage breaking. Here, we analyze large-scale three-dimensional Discrete-Element Method (DEM) simulations of different granular flows and show that an approximate"granular element" defined at the scale of observed dynamical correlations (roughly three to five particle diameters) has a reasonable continuum interpretation. By viewing all the simulations as an ensemble of granular elements which deform and move with the flow, we can track material evolution at a local level. Our results confirm some of the hypotheses of classical plasticity theory while contradicting others and suggest a subtle physical picture of granular failure, combining liquid-like dependence on deformation rate and solid-like dependence on strain. Our computational methods and results can be used to guide the development of more realistic continuum models, based on observed local relationships betweenaverage variables.

  1. The energetics of stochastic continuum equations for fluid systems

    NASA Astrophysics Data System (ADS)

    Fleming, Rex J.

    1991-05-01

    The numerical solution of the relevant prognostic equations for fluid systems involves sources of uncertainty in the initial conditions and uncertainty in the external forces applied to a physical system. The purpose of the note is to introduce stochastic continuum equations for fluid systems that express the uncertainty dynamically. These equations, written in analytical form, describe continuous field quantities which dynamically predict the future and its believability. Beginning with the Navier-Stokes equations and expressing uncertainty as continuous field quantities, one avoids the serious shortcomings and computational redundancy of previous methods using discrete amplitudes (gridpoints or orthogonal functions). No assumptions are made concerning the original deterministic equations, which predict the evolution of a single point in phase space. Rather, these are a subset of the stochastic continuum equations, which predict an infinite cloud of points in phase space. The amount of detailed structure in the shape of the cloud depends upon the degree of derivative closure used in the continuum equations. The solution of the stochastic continuum equations offers a tremendous computational improvement over previous fully stochastic dynamic methods. The equations are perfectly suited to the new emerging parallel computer architecture.

  2. Scaffolding the Inquiry Continuum and the Constitution of Identity

    ERIC Educational Resources Information Center

    Melville, Wayne; Bartley, Anthony; Fazio, Xavier

    2013-01-01

    This article considers the impact of scaffolding on pre-service science teachers' constitution of identities as teachers of inquiry. This scaffolding has consisted of 2 major components, a unit on current electricity which encompasses the inquiry continuum and an open inquiry which is situated in context of classroom practice. Our analysis…

  3. Continuum of Medical Education in Obstetrics and Gynecology.

    ERIC Educational Resources Information Center

    Dohner, Charles W.; Hunter, Charles A., Jr.

    1980-01-01

    Over the past eight years the obstetric and gynecology specialty has applied a system model of instructional planning to the continuum of medical education. The systems model of needs identification, preassessment, instructional objectives, instructional materials, learning experiences; and evaluation techniques directly related to objectives was…

  4. THE SOLAR X-RAY CONTINUUM MEASURED BY RESIK

    SciTech Connect

    Phillips, K. J. H.; Sylwester, J.; Sylwester, B.; Kuznetsov, V. D. E-mail: js@cbk.pan.wroc.p E-mail: kvd@izmiran.r

    2010-03-01

    The solar X-ray continuum emission at five wavelengths between 3.495 A and 4.220 A for 19 flares in a 7-month period in 2002-2003 was observed by the RESIK (REntgenovsky Spektrometr s Izognutymi Kristalami) crystal spectrometer on CORONAS-F. In this wavelength region, free-free and free-bound emissions have comparable fluxes. With a pulse-height analyzer having settings close to optimal, the fluorescence background was removed so that RESIK measured true solar continuum in these bands with an uncertainty in the absolute calibration of +-20%. With an isothermal assumption, and temperature and emission measure derived from the ratio of the two GOES channels, the observed continuum emission normalized to an emission measure of 10{sup 48} cm{sup -3} was compared with theoretical continua using the CHIANTI atomic code. The accuracy of the RESIK measurements allows photospheric and coronal abundance sets, important for the free-bound continuum, to be discriminated. It is found that there is agreement to about 25% of the measured continua with those calculated from CHIANTI assuming coronal abundances in which Mg, Si, and Fe abundances are four times photospheric.

  5. Space shuttle Ram glow: Implication of NO2 recombination continuum

    NASA Astrophysics Data System (ADS)

    Swenson, G. R.; Mende, S. B.; Clifton, S.

    1985-09-01

    The ram glow data gathered to data from imaging experiments on space shuttle suggest the glow is a continuum (within 34 angstrom resolution); the continuum shape is such that the peak is near 7000 angstroms decreasing to the blue and red, and the average molecular travel leading to emission after leaving the surface is 20 cm (assuming isotropic scattering from the surface). Emission continuum is rare in molecular systems but the measured spectrum does resemble the laboratory spectrum of NO2 (B) recombination continuum. The thickness of the observed emission is consistent with the NO2 hypothesis given an exit velocity of approx. 2.5 km/sec (1.3 eV) which leaves approx. 3.7 eV of ramming OI energy available for unbonding the recombined NO2 from the surface. The NO2 is formed in a 3-body recombination of OI + NO + m = NO2 + m where OI originates from the atmosphere and NO is chemically formed on the surface from atmospheric NI and OI. The spacecraft surface then acts as the n for the reaction: Evidence exists from orbital mass spectrometer data that the NO and NO2 chemistry described in this process does occur on surfaces of spectrometer orifices in orbit. Surface temperature effects are likely a factor in the NO sticking efficiency and, therefore, glow intensities.

  6. Haro 11: Where is the Lyman Continuum Source?

    NASA Astrophysics Data System (ADS)

    Keenan, Ryan P.; Oey, M. S.; Jaskot, Anne; James, Bethan

    2017-01-01

    Haro 11 is the best known source of Lyman continuum (LyC) emission in the local universe and is thought to be an analog of the early galaxies that drove cosmic reionization. The source of LyC emission within Haro 11 has not yet been identified, since the LyC detection is unresolved. To map the optically thin regions in this galaxy, we apply our technique of ionization parameter mapping, which uses continuum-subtracted, HST WFC3 and ACS narrowband images of [O III] and [O II] emission to construct ratio maps. These allow us to identify regions of the galaxy that are likely to be optically thin. Due to the importance of continuum subtraction for this technique, we also develop a new method for scaling the continuum images based on the mode of the pixel distribution. We find that a region extending from Haro 11 Knot A appears to be optically thin. Other regions of the galaxy have also been suggested as potential LyC sources, based on the presence of a ULX (Knot B) and Ly-alpha emission (Knot C). Our work now adds Knot A as a third candidate LyC source in this complex merger system. (This work was supported by NASA grant HST-GO-13702)

  7. Radio-continuum observations of Sersic-Pastoriza galaxies

    NASA Astrophysics Data System (ADS)

    Yates, G. J.; Saikia, D. J.; Pedlar, A.; Axon, D. J.

    1989-07-01

    Preliminary results of radio continuum observations of selected Sersic-Pastoriza galaxies are presented. Subjects reported are their radio properties at 6 and 20 cm, estimates of linear polarization and spectral indices and a discussion of possible relationships between nuclear morphology and radio luminosity.

  8. Isospin Mixing and the Continuum Coupling in Weakly Bound Nuclei

    SciTech Connect

    Michel, N.; Nazarewicz, Witold; Ploszajczak, M.

    2010-01-01

    We investigate the near-threshold behavior of one-nucleon spectroscopic factors in mirror nuclei using the Gamow Shell Model, which simultaneously takes into account many-body correlations and continuum effects. We demonstrate that for weakly bound or unbound systems, the mirror symmetry-breaking effects are appreciable, and they manifest in large differences of spectroscopic factors in a mirror pair.

  9. Spectroscopic investigation of the vibrational quasi-continuum arising from internal rotation of a methyl group

    SciTech Connect

    Hougen, J.T.

    1993-12-01

    The goal of this project is to use spectroscopic techniques to investigate in detail phenomena involving the vibrational quasi-continuum in a simple physical system. Acetaldehyde was chosen for the study because: (i) methyl groups have been suggested to be important promotors of intramolecular vibrational relaxation, (ii) the internal rotation of a methyl group is an easily describle large-amplitude motion, which should retain its simple character even at high levels of excitation, and (iii) the aldehyde carbonyl group offers the possibility of both vibrational and electronic probing. The present investigation of the ground electronic state has three parts: (1) understanding the {open_quotes}isolated{close_quotes} internal-rotation motion below, at, and above the top of the torsional barrier, (2) understanding in detail traditional (bond stretching and bending) vibrational fundamental and overtone states, and (3) understanding interactions involving states with multiquantum excitations of at least one of these two kinds of motion.

  10. Folding and faulting of an elastic continuum

    PubMed Central

    Gourgiotis, Panos A.

    2016-01-01

    Folding is a process in which bending is localized at sharp edges separated by almost undeformed elements. This process is rarely encountered in Nature, although some exceptions can be found in unusual layered rock formations (called ‘chevrons’) and seashell patterns (for instance Lopha cristagalli). In mechanics, the bending of a three-dimensional elastic solid is common (for example, in bulk wave propagation), but folding is usually not achieved. In this article, the route leading to folding is shown for an elastic solid obeying the couple-stress theory with an extreme anisotropy. This result is obtained with a perturbation technique, which involves the derivation of new two-dimensional Green's functions for applied concentrated force and moment. While the former perturbation reveals folding, the latter shows that a material in an extreme anisotropic state is also prone to a faulting instability, in which a displacement step of finite size emerges. Another failure mechanism, namely the formation of dilation/compaction bands, is also highlighted. Finally, a geophysical application to the mechanics of chevron formation shows how the proposed approach may explain the formation of natural structures. PMID:27118925

  11. Continuum Theory of Dislocations: Cell Structure Formation

    NASA Astrophysics Data System (ADS)

    Limkumnerd, Surachate; Sethna, James P.

    2005-03-01

    Line-like topological defects inside metals are called dislocations. These dislocations in late stages of hardening form patterns called cell structures. We are developing a mesoscale theory for the formation of cell structures that systematically derives the order parameter fields and evolution laws from the conserved topological Burgers vector density or the Nye dislocation tensor. (In classical plasticity theories, describing scales large compared to these cells, one normally bypasses the complicated motions of the dislocations by supplying yield surface and plastic hardening function in order to determine the evolution of state variables.) Using Landau approach and a closure approximation, an evolution equation for the dislocation density tensor is obtained by employing simple symmetry arguments and the constraint that the elastic energy must decrease with time at fixed stress. The evolution laws lead to singularity formation at finite times, which we expect will be related to the formation of cell walls. Implementation of finite difference simulations using the upwind scheme and the results in one and higher dimensions will be discussed.

  12. Return of the Quantum Cellular Automata: Episode VI

    NASA Astrophysics Data System (ADS)

    Carr, Lincoln D.; Hillberry, Logan E.; Rall, Patrick; Halpern, Nicole Yunger; Bao, Ning; Montangero, Simone

    2016-05-01

    There are now over 150 quantum simulators or analog quantum computers worldwide. Although exploring quantum phase transitions, many-body localization, and the generalized Gibbs ensemble are exciting and worthwhile endeavors, there are totally untapped directions we have not yet pursued. One of these is quantum cellular automata. In the past a principal goal of quantum cellular automata was to reproduce continuum single particle quantum physics such as the Schrodinger or Dirac equation from simple rule sets. Now that we begin to really understand entanglement and many-body quantum physics at a deeper level, quantum cellular automata present new possibilities. We explore several time evolution schemes on simple spin chains leading to high degrees of quantum complexity and nontrivial quantum dynamics. We explain how the 256 known classical elementary cellular automata reduce to just a few exciting quantum cases. Our analysis tools include mutual information based complex networks as well as more familiar quantifiers like sound speed and diffusion rate. Funded by NSF and AFOSR.

  13. Broad band nonlinear optical absorption measurements of the laser dye IR26 using white light continuum Z-scan

    NASA Astrophysics Data System (ADS)

    Dey, Soumyodeep; Bongu, Sudhakara Reddy; Bisht, Prem Ballabh

    2017-03-01

    We study the nonlinear optical response of a standard dye IR26 using the Z-scan technique, but with the white light continuum. The continuum source of wavelength from 450 nm to 1650 nm has been generated from the photonic crystal fiber on pumping with 772 nm of Ti:Sapphire oscillator. The use of broadband incident pulse enables us to probe saturable absorption (SA) and reverse saturable absorption (RSA) over the large spectral range with a single Z-scan measurement. The system shows SA in the resonant region while it turns to RSA in the non-resonant regions. The low saturation intensity of the dye can be explained based on the simultaneous excitation from ground states to various higher energy levels with the help of composite energy level diagram. The cumulative effects of excited state absorption and thermal induced nonlinear optical effects are responsible for the observed RSA.

  14. [Senescence and cellular immortality].

    PubMed

    Trentesaux, C; Riou, J-F

    2010-11-01

    Senescence was originally described from the observation of the limited ability of normal cells to grow in culture, and may be generated by telomere erosion, accumulation of DNA damages, oxidative stress and modulation of oncogenes or tumor suppressor genes. Senescence corresponds to a cellular response aiming to control tumor progression by limiting cell proliferation and thus constitutes an anticancer barrier. Senescence is observed in pre-malignant tumor stages and disappears from malignant tumors. Agents used in standard chemotherapy also have the potential to induce senescence, which may partly explain their therapeutic activities. It is possible to restore senescence in tumors using targeted therapies that triggers telomere dysfunction or reactivates suppressor genes functions, which are essential for the onset of senescence.

  15. Combining cellular automata and Lattice Boltzmann method to model multiscale avascular tumor growth coupled with nutrient diffusion and immune competition.

    PubMed

    Alemani, Davide; Pappalardo, Francesco; Pennisi, Marzio; Motta, Santo; Brusic, Vladimir

    2012-02-28

    In the last decades the Lattice Boltzmann method (LB) has been successfully used to simulate a variety of processes. The LB model describes the microscopic processes occurring at the cellular level and the macroscopic processes occurring at the continuum level with a unique function, the probability distribution function. Recently, it has been tried to couple deterministic approaches with probabilistic cellular automata (probabilistic CA) methods with the aim to model temporal evolution of tumor growths and three dimensional spatial evolution, obtaining hybrid methodologies. Despite the good results attained by CA-PDE methods, there is one important issue which has not been completely solved: the intrinsic stochastic nature of the interactions at the interface between cellular (microscopic) and continuum (macroscopic) level. CA methods are able to cope with the stochastic phenomena because of their probabilistic nature, while PDE methods are fully deterministic. Even if the coupling is mathematically correct, there could be important statistical effects that could be missed by the PDE approach. For such a reason, to be able to develop and manage a model that takes into account all these three level of complexity (cellular, molecular and continuum), we believe that PDE should be replaced with a statistic and stochastic model based on the numerical discretization of the Boltzmann equation: The Lattice Boltzmann (LB) method. In this work we introduce a new hybrid method to simulate tumor growth and immune system, by applying Cellular Automata Lattice Boltzmann (CA-LB) approach.

  16. A Review of Social Media Technologies Across the Global HIV Care Continuum.

    PubMed

    Garett, Renee; Smith, Justin; Young, Sean D

    2016-06-01

    HIV remains one of the main health global threats of the 21(st) century. There is a great need to reach HIV at-risk and HIV+ populations across the HIV care continuum to improve HIV prevention, testing, and treatment. New technologies, such as Social Media (SM) and Social Networking Sites (SNS) have shown early promise in HIV research studies. To assess the state of research on the use of SM/SNSs across the HIV continuum, we conducted a systematic literature review on HIV-related research using SM during the last 10 years. A total of 44 papers were identified, of which 17 (38.6%) were classified as intervention studies and 19 (61.3%) as observational. The focus areas of the studies was evenly distributed between outreach outreach/recruitment (n=15, 34.1%), surveillance/observation (n=13, 29.5%) and prevention/treatment (n=16, 36.4%). Researchers engaged the community through Facebook (n=26, 59.1%), multiple-platforms (n=13, 29.5%), or one of several geo-social networking sites (n=10, 22.7%). Studies primarily targeted MSM (n=24, 54.5%) and youth (n=13, 29.5%) with little research focused on HIV+ populations (n=5, 11.4%). The current state of the field, trends, and limitations of this work are discussed.

  17. Comparison of shock structure solutions using independent continuum and kinetic theory approaches

    NASA Technical Reports Server (NTRS)

    Fiscko, Kurt A.; Chapman, Dean R.

    1988-01-01

    A vehicle traversing the atmosphere will experience flight regimes at high altitudes in which the thickness of a hypersonic shock wave is not small compared to the shock standoff distance from the hard body. When this occurs, it is essential to compute accurate flow field solutions within the shock structure. In this paper, one-dimensional shock structure is investigated for various monatomic gases from Mach 1.4 to Mach 35. Kinetic theory solutions are computed using the Direct Simulation Monte Carlo method. Steady-state solutions of the Navier-Stokes equations and of a slightly truncated form of the Burnett equations are determined by relaxation to a steady state of the time-dependent continuum equations. Monte Carlo results are in excellent agreement with published experimental data and are used as bases of comparison for continuum solutions. For a Maxwellian gas, the truncated Burnett equations are shown to produce far more accurate solutions of shock structure than the Navier-Stokes equations.

  18. Nuclear Astrophysics Studies with the Method of Continuum-Discretized Coupled-Channels

    SciTech Connect

    Ogata, K.; Yahiro, M.; Hashimoto, S.; Iseri, Y.; Kan, M.; Kamimura, M.

    2010-05-12

    The method of continuum-discretized coupled-channels (CDCC) is applied to two nuclear astrophysics studies. One is the determination of the astrophysical factor S{sub 17}(0) for the {sup 7}Be(p,gamma){sup 8}B reaction from the analysis of {sup 8}B breakup by {sup 208}Pb at 52 A MeV. We obtain S{sub 17}(0) = 20.9{sub -1.9}{sup +2.0} eV b, which is significantly larger than the previous one, S{sub 17}(0) = 18.9+-1.8 eV b, determined from an analysis with the virtual photon theory. The difference between the two values is found to be due to the contributions from nuclear breakup and higher-order processes. The other application of CDCC is the re-evaluation of the triple-alpha reaction rate by directly solving the three-body Schroedinger equation. The resonant and nonresonant processes are treated on the same footing. An accurate description of the alpha-alpha nonresonant states significantly quenches the Coulomb barrier between the first two alpha-particles and the third alpha-particle. Consequently, the alpha-alpha nonresonant continuum states give a markedly larger contribution at low temperatures than that reported in previous studies. We find an increase in triple-alpha reaction rate by 26 orders of magnitude around 10{sup 7} K compared with the rate of NACRE.

  19. 24 CFR 578.7 - Responsibilities of the Continuum of Care.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... Development (Continued) OFFICE OF ASSISTANT SECRETARY FOR COMMUNITY PLANNING AND DEVELOPMENT, DEPARTMENT OF HOUSING AND URBAN DEVELOPMENT COMMUNITY FACILITIES CONTINUUM OF CARE PROGRAM Establishing and Operating a... receive permanent supportive housing assistance; and (vi) Where the Continuum is designated a...

  20. From a discrete to a continuum model of cell dynamics in one dimension

    NASA Astrophysics Data System (ADS)

    Murray, Philip J.; Edwards, Carina M.; Tindall, Marcus J.; Maini, Philip K.

    2009-09-01

    Multiscale modeling is emerging as one of the key challenges in mathematical biology. However, the recent rapid increase in the number of modeling methodologies being used to describe cell populations has raised a number of interesting questions. For example, at the cellular scale, how can the appropriate discrete cell-level model be identified in a given context? Additionally, how can the many phenomenological assumptions used in the derivation of models at the continuum scale be related to individual cell behavior? In order to begin to address such questions, we consider a discrete one-dimensional cell-based model in which cells are assumed to interact via linear springs. From the discrete equations of motion, the continuous Rouse [P. E. Rouse, J. Chem. Phys. 21, 1272 (1953)] model is obtained. This formalism readily allows the definition of a cell number density for which a nonlinear “fast” diffusion equation is derived. Excellent agreement is demonstrated between the continuum and discrete models. Subsequently, via the incorporation of cell division, we demonstrate that the derived nonlinear diffusion model is robust to the inclusion of more realistic biological detail. In the limit of stiff springs, where cells can be considered to be incompressible, we show that cell velocity can be directly related to cell production. This assumption is frequently made in the literature but our derivation places limits on its validity. Finally, the model is compared with a model of a similar form recently derived for a different discrete cell-based model and it is shown how the different diffusion coefficients can be understood in terms of the underlying assumptions about cell behavior in the respective discrete models.

  1. Cellular Phone Towers

    MedlinePlus

    ... depending on the construction materials of the building. Wood or cement block reduces the exposure level of ... mobile devices such as cell phones. The Environmental Protection Agency (EPA) states: “At very high levels, RF ...

  2. Estimating Equivalent Continuum Scales in Fractured Aquifer Watersheds Using Discrete Feature Network Simulation

    NASA Astrophysics Data System (ADS)

    Wellman, T. P.; Poeter, E. P.

    2003-12-01

    Fractured aquifers serve as primary water resources throughout the western United States. In light of diminishing water supply, management practices must be improved to promote resource sustainability. Ground-water flow models are often the preferred management tool, but can be computationally expensive and difficult to implement in large-scale fractured environments. Discrete feature network (DFN) simulation is a robust approach for modeling fluid movement in fractured architecture, but numerically expensive for large-scale models. By using an equivalent continuum model (ECM) numerical expense may be substantially reduced. An intrinsic assumption of the ECM approach is that the geologic media is represented accurately as a continuum, requiring that grid scale discretization correspond to representative elementary scale (RES) at each location within a fractured aquifer. Heterogeneity and compartmentalization likely cause regions with large differences in fracture permeability and connectivity, resulting in spatially variable RES. Thus, while regional flow may be honored using essentially any grid pattern, failure to properly represent spatially variable RES could lead to erroneous predictions of local flow and transport, especially in highly heterogeneous zones. The purpose of our study is to determine whether head predictions from DFN flow simulations can delineate spatially variable RES in fractured aquifers. Provided there is a correlation of simulated hydraulic head to continuum scale, we hypothesize that RES can be identified using spatially disperse water level observations within a fractured aquifer watershed. Preliminary results suggest there is potential for using hydraulic head data to determine the RES. Ongoing research is necessary to confirm these preliminary results and our hypothesis.

  3. The First Interlaced Continuum Robot, Devised to Intrinsically Follow the Leader

    PubMed Central

    Kang, Byungjeon; Kojcev, Risto; Sinibaldi, Edoardo

    2016-01-01

    Flexible probes that are safely deployed to hard-to-reach targets while avoiding critical structures are strategic in several high-impact application fields, including the biomedical sector and the sector of inspections at large. A critical problem for these tools is the best approach for deploying an entire tool body, not only its tip, on a sought trajectory. A probe that achieves this deployment is considered to follow the leader (or to achieve follow-the-leader deployment) because its body sections follow the track traced by its tip. Follow-the-leader deployment through cavities is complicated due to a lack of external supports. Currently, no definitive implementation for a probe that is intrinsically able to follow the leader, i.e., without relying on external supports, has been achieved. In this paper, we present a completely new device, namely the first interlaced continuum robot, devised to intrinsically follow the leader. We developed the interlaced configuration by pursuing a conceptual approach irrespective of application-specific constraints and assuming two flexible tools with controllable stiffness. We questioned the possibility of solving the previously mentioned deployment problem by harnessing probe symmetry during the design process. This study examines the entire development of the novel interlaced probe: model-based conceptual design, detailed design and prototyping, and preliminary experimental assessment. Our probe can build a track with a radius of curvature that is as small as twice the probe diameter, which enables it to outperform state-of-the-art tools that are aimed at follow-the-leader deployment. Despite the limitations that are inherently associated with its original character, this study provides a prototypical approach to the design of interlaced continuum systems and demonstrates the first interlaced continuum probe, which is intrinsically able to follow the leader. PMID:26914328

  4. The First Interlaced Continuum Robot, Devised to Intrinsically Follow the Leader.

    PubMed

    Kang, Byungjeon; Kojcev, Risto; Sinibaldi, Edoardo

    2016-01-01

    Flexible probes that are safely deployed to hard-to-reach targets while avoiding critical structures are strategic in several high-impact application fields, including the biomedical sector and the sector of inspections at large. A critical problem for these tools is the best approach for deploying an entire tool body, not only its tip, on a sought trajectory. A probe that achieves this deployment is considered to follow the leader (or to achieve follow-the-leader deployment) because its body sections follow the track traced by its tip. Follow-the-leader deployment through cavities is complicated due to a lack of external supports. Currently, no definitive implementation for a probe that is intrinsically able to follow the leader, i.e., without relying on external supports, has been achieved. In this paper, we present a completely new device, namely the first interlaced continuum robot, devised to intrinsically follow the leader. We developed the interlaced configuration by pursuing a conceptual approach irrespective of application-specific constraints and assuming two flexible tools with controllable stiffness. We questioned the possibility of solving the previously mentioned deployment problem by harnessing probe symmetry during the design process. This study examines the entire development of the novel interlaced probe: model-based conceptual design, detailed design and prototyping, and preliminary experimental assessment. Our probe can build a track with a radius of curvature that is as small as twice the probe diameter, which enables it to outperform state-of-the-art tools that are aimed at follow-the-leader deployment. Despite the limitations that are inherently associated with its original character, this study provides a prototypical approach to the design of interlaced continuum systems and demonstrates the first interlaced continuum probe, which is intrinsically able to follow the leader.

  5. Franck—Condon breakdown as a probe of continuum coupling in molecular photoionization

    NASA Astrophysics Data System (ADS)

    Kakar, Sandeep; Choi, Heung Cheun; Poliakoff, E. D.

    1992-03-01

    We have measured vibrational branching ratios for 4σ -1 photoionization of CO in order to characterize continuum channel coupling. The results indicate that the shape resonance in the 5σ→ɛσ channel influences vibrational branching ratios of the 4σ -1 channel via continuum coupling, and the data illustrate how continuum channel coupling affects molecular photoionization dynamics.

  6. 77 FR 33229 - Notice of Proposed Information Collection for Public Comment; Continuum of Care Homeless...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-05

    ... URBAN DEVELOPMENT Notice of Proposed Information Collection for Public Comment; Continuum of Care Homeless Assistance Grant Application--Continuum of Care Application AGENCY: Office of Assistant Secretary... 27243, HUD published a proposed information collection for public comment entitled Continuum of Care...

  7. 77 FR 27243 - Notice of Propose Information Collection for Public Comment; Continuum of Care Homeless...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-09

    ... URBAN DEVELOPMENT Notice of Propose Information Collection for Public Comment; Continuum of Care Homeless Assistance Grant Application--Continuum of Care Application AGENCY: Office of Assistant Secretary... information: Title of Proposal: HEARTH Continuum of Care Program Application. Description of the need for...

  8. Elucidating a Goal-Setting Continuum in Brain Injury Rehabilitation.

    PubMed

    Hunt, Anne W; Le Dorze, Guylaine; Trentham, Barry; Polatajko, Helene J; Dawson, Deirdre R

    2015-08-01

    For individuals with brain injury, active participation in goal setting is associated with better rehabilitation outcomes. However, clinicians report difficulty engaging these clients in goal setting due to perceived or real deficits (e.g., lack of awareness). We conducted a study using grounded theory methods to understand how clinicians from occupational therapy facilitate client engagement and manage challenges inherent in goal setting with this population. Through constant comparative analysis, a goal-setting continuum emerged. At one end of the continuum, therapists embrace client-determined goals and enable clients to decide their own goals. At the other, therapists accept preset organization-determined goals (e.g., "the goal is discharge") and pay little attention to client input. Although all participants aspired to embrace client-determined goal setting, most felt powerless to do so within perceived organizational constraints. Views of advocacy and empowerment help to explain our findings and inform more inclusive practice.

  9. Wave propagation in equivalent continuums representing truss lattice materials

    SciTech Connect

    Messner, Mark C.; Barham, Matthew I.; Kumar, Mukul; Barton, Nathan R.

    2015-07-29

    Stiffness scales linearly with density in stretch-dominated lattice meta-materials offering the possibility of very light yet very stiff structures. Current additive manufacturing techniques can assemble structures consisting of these lattice materials, but the design of such structures will require accurate, efficient simulation techniques. Equivalent continuum models have several advantages over discrete truss models of stretch dominated lattices, including computational efficiency and ease of model construction. However, the development an equivalent model suitable for representing the dynamic response of a periodic truss is complicated by microinertial effects. This paper derives a dynamic equivalent continuum model for periodic truss structures and verifies it against detailed finite element simulations. The model must incorporate microinertial effects to accurately reproduce long-wavelength characteristics of the response such as anisotropic elastic soundspeeds. The formulation presented here also improves upon previous work by preserving equilibrium at truss joints for affine lattice deformation and by improving numerical stability by eliminating vertices in the effective yield surface.

  10. Capillarity-driven flows at the continuum limit.

    PubMed

    Vincent, Olivier; Szenicer, Alexandre; Stroock, Abraham D

    2016-08-21

    We experimentally investigate the dynamics of capillary-driven flows at the nanoscale, using an original platform that combines nanoscale pores (⋍3 nm in diameter) and microfluidic features. In particular, we show that drying involves a fine coupling between thermodynamics and fluid mechanics that can be used to generate precisely controlled nanoflows driven by extreme stresses - up to 100 MPa of tension. We exploit these tunable flows to provide quantitative tests of continuum theories (e.g. Kelvin-Laplace equation and Poiseuille flow) across an unprecedented range and we isolate the breakdown of continuum as a negative slip length of molecular dimension. Our results show a coherent picture across multiple experiments including drying-induced permeation flows, imbibition and poroelastic transients.

  11. Geometrically nonlinear continuum thermomechanics with surface energies coupled to diffusion

    NASA Astrophysics Data System (ADS)

    McBride, A. T.; Javili, A.; Steinmann, P.; Bargmann, S.

    2011-10-01

    Surfaces can have a significant influence on the overall response of a continuum body but are often neglected or accounted for in an ad hoc manner. This work is concerned with a nonlinear continuum thermomechanics formulation which accounts for surface structures and includes the effects of diffusion and viscoelasticity. The formulation is presented within a thermodynamically consistent framework and elucidates the nature of the coupling between the various fields, and the surface and the bulk. Conservation principles are used to determine the form of the constitutive relations and the evolution equations. Restrictions on the jump in the temperature and the chemical potential between the surface and the bulk are not a priori assumptions, rather they arise from the reduced dissipation inequality on the surface and are shown to be satisfiable without imposing the standard assumptions of thermal and chemical slavery. The nature of the constitutive relations is made clear via an example wherein the form of the Helmholtz energy is explicitly given.

  12. Applications of implicit BGK scheme in near-continuum flow

    NASA Astrophysics Data System (ADS)

    Li, Qibing; Fu, Song

    2006-07-01

    The implicit gas-kinetic Bhatnagar-Gross-Krook (BGK) scheme and kinetic boundary conditions are introduced and applied to the study of two typical flows in the near continuum regime, the hypersonic flow around a hollow cylinder flare and the flow in microchannels. The grid convergent numerical results in hypersonic flow agree well with experimental measurements and direct simulation Monte Carlo (DSMC) studies. For the low-speed microchannel flow, the present simulated results show good agreement with analytic solutions deduced from Navier-Stokes (NS) equations with slip conditions and DSMC computations. The implicit technology is found to be able to greatly improve the efficiency, which is expected to be a truly practical tool for the flow in micro-electro-mechanical systems (MEMS). The present study reveals the good performance of the BGK scheme in simulations of both high-speed and low-speed viscous flow in near continuum regime.

  13. Topology and layout optimization of discrete and continuum structures

    NASA Technical Reports Server (NTRS)

    Bendsoe, Martin P.; Kikuchi, Noboru

    1993-01-01

    The basic features of the ground structure method for truss structure an continuum problems are described. Problems with a large number of potential structural elements are considered using the compliance of the structure as the objective function. The design problem is the minimization of compliance for a given structural weight, and the design variables for truss problems are the cross-sectional areas of the individual truss members, while for continuum problems they are the variable densities of material in each of the elements of the FEM discretization. It is shown how homogenization theory can be applied to provide a relation between material density and the effective material properties of a periodic medium with a known microstructure of material and voids.

  14. Three charged particles in the continuum: astrophysical examples

    NASA Astrophysics Data System (ADS)

    Belyaev, V. B.; Levin, S. B.; Yakovlev, S. L.

    2004-03-01

    We suggest a new adiabatic approach for the description of three charged particles in the continuum. This approach is based on the Coulomb-Fourier transformation of a three-body Hamiltonian, which allows us to develop a scheme, alternative to the Born-Oppenheimer one. The approach appears as an expansion of the kernels of corresponding integral transformations in terms of small mass-ratio parameter. To be specific, the results are presented for the system ppe in the continuum. The wavefunction of such a system is compared with the one which is used for the estimation of the rate for triple reaction p + p + e rarr d + ngr, which takes place as a step of the pp-cycle in the centre of the Sun. The problem of microscopic screening for this particular reaction is discussed.

  15. [Continuum, the continuing education platform based on a competency matrix].

    PubMed

    Ochoa Sangrador, C; Villaizán Pérez, C; González de Dios, J; Hijano Bandera, F; Málaga Guerrero, S

    2016-04-01

    Competency-Based Education is a learning method that has changed the traditional teaching-based focus to a learning-based one. Students are the centre of the process, in which they must learn to learn, solve problems, and adapt to changes in their environment. The goal is to provide learning based on knowledge, skills (know-how), attitude and behaviour. These sets of knowledge are called competencies. It is essential to have a reference of the required competencies in order to identify the need for them. Their acquisition is approached through teaching modules, in which one or more skills can be acquired. This teaching strategy has been adopted by Continuum, the distance learning platform of the Spanish Paediatric Association, which has developed a competency matrix based on the Global Paediatric Education Consortium training program. In this article, a review will be presented on the basics of Competency-Based Education and how it is applied in Continuum.

  16. Lyman Continuum Emission Search at z 1 Using GALEX Imaging

    NASA Astrophysics Data System (ADS)

    Friedman, Peter G.; Small, T. A.; Deharveng, J. M.; Milliard, B.

    2007-12-01

    We present the status and results of a search for Lyman continuum emission from galaxies at z 1. We use GALEX data in the Extended Groth Strip. Our method is to stack FUV image flux at locations of DEEP2 redshift catalog galaxies in the redshift range 1 < z < 1.5. In this range, the GALEX FUV band (1350-1800 A) is sensitive only to rest wavelengths below 912 A. We normalize FUV flux to NUV flux and calculate the Lyman continuum emission escape fraction by fitting SED models to broad-band fluxes from ground-based surveys of the same galaxies. GALEX is a NASA Small Explorer mission with contributions from France and South Korea. This work uses data from the AEGIS collaboration, which is supported by grants from the National Science Foundation, NASA, and the Keck Observatory.

  17. GALEX Imaging Search for Lyman Continuum Emission at z 1

    NASA Astrophysics Data System (ADS)

    Friedman, Peter G.; Small, T. A.; Deharveng, J. M.; Milliard, B.

    2009-01-01

    We present the status and results of a search for Lyman continuum emission from galaxies at z 1. We use GALEX data in the Extended Groth Strip. Our method is to stack FUV image flux at locations of DEEP2 redshift catalog galaxies in the redshift range 1 < z < 1.5. In this range, the GALEX FUV band (1350-1800 A) is sensitive only to rest wavelengths below 912 A. We normalize FUV flux to NUV flux and calculate the Lyman continuum emission escape fraction by fitting SED models to broad-band fluxes from ground-based surveys of the same galaxies. GALEX is a NASA Small Explorer mission with contributions from France and South Korea. This work uses data from the AEGIS collaboration, which is supported by grants from the National Science Foundation, NASA, and the Keck Observatory.

  18. GALEX Imaging Search for Lyman Continuum Emission at z 1

    NASA Astrophysics Data System (ADS)

    Friedman, Peter G.; Small, T. A.; Deharveng, J. M.; Milliard, B.

    2010-01-01

    We present the status and results of a search for Lyman continuum emission from galaxies at z 1. We use GALEX data in the Extended Groth Strip. Our method is to stack FUV image flux at locations of DEEP2 redshift catalog galaxies in the redshift range 1 < z < 1.5. In this range, the GALEX FUV band (1350-1800 A) is sensitive only to rest wavelengths below 912 A. We normalize FUV flux to NUV flux and calculate the Lyman continuum emission escape fraction by fitting SED models to broad-band fluxes from ground-based surveys of the same galaxies. GALEX is a NASA Small Explorer mission with contributions from France and South Korea. This work uses data from the AEGIS collaboration, which is supported by grants from the National Science Foundation, NASA, and the Keck Observatory.

  19. The virial theorem for the polarizable continuum model

    SciTech Connect

    Cammi, R.

    2014-02-28

    The electronic virial theorem is extended to molecular systems within the framework of the Polarizable Continuum Model (PCM) to describe solvation effects. The theorem is given in the form of a relation involving the components of the energy (kinetic and potential) of a molecular solute and its electrostatic properties (potential and field) at the boundary of the cavity in the continuum medium. The virial theorem is also derived in the presence of the Pauli repulsion component of the solute-solvent interaction. Furthermore, it is shown that these forms of the PCM virial theorem may be related to the virial theorem of more simple systems as a molecule in the presence of fixed point charges, and as an atom in a spherical box with confining potential.

  20. Metric Properties of Discrete Time Exclusion Type Processes in Continuum

    NASA Astrophysics Data System (ADS)

    Blank, Michael

    2010-07-01

    A new class of exclusion type processes acting in continuum with synchronous updating is introduced and studied. Ergodic averages of particle velocities are obtained and their connections to other statistical quantities, in particular to the particle density (the so called Fundamental Diagram) is analyzed rigorously. The main technical tool is a "dynamical" coupling applied in a nonstandard fashion: we do not prove the existence of the successful coupling (which even might not hold) but instead use its presence/absence as an important diagnostic tool. Despite that this approach cannot be applied to lattice systems directly, it allows to obtain new results for the lattice systems embedding them to the systems in continuum. Applications to the traffic flows modelling are discussed as well.