SPRUCE Deep Peat Heating (DPH) Peat Water Content and Temperature Profiles for Experimental Plot Cores, June 2014 through June 2015

DOE Data Explorer

Kluber, Lauren A. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Phillips, Jana R. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Hanson, Paul J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Schadt, Christopher W. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.

2016-01-01

This data set provides the peat water content and peat temperature at time of sampling for peat cores collected before and during the SPRUCE Deep Peat Heating (DPH) study. Cores were collected during three sampling events: 03 June 2014, 09 September 2014, and 16 June 2015. Two cores were extracted from hollow locations in each of the 10 experimental plots (4, 6, 8, 10, 11, 13, 16, 17, 19, and 20). Cores were partitioned into samples at 11 depth increments: 0-10, 10-20, 20-30, 30-40, 40-50, 50-75, 75-100, 100-125, 125-150, 150-175, and 175-200 cm below surface of the hollow.

The WAIS Melt Monitor: An automated ice core melting system for meltwater sample handling and the collection of high resolution microparticle size distribution data

NASA Astrophysics Data System (ADS)

Breton, D. J.; Koffman, B. G.; Kreutz, K. J.; Hamilton, G. S.

2010-12-01

Paleoclimate data are often extracted from ice cores by careful geochemical analysis of meltwater samples. The analysis of the microparticles found in ice cores can also yield unique clues about atmospheric dust loading and transport, dust provenance and past environmental conditions. Determination of microparticle concentration, size distribution and chemical makeup as a function of depth is especially difficult because the particle size measurement either consumes or contaminates the meltwater, preventing further geochemical analysis. Here we describe a microcontroller-based ice core melting system which allows the collection of separate microparticle and chemistry samples from the same depth intervals in the ice core, while logging and accurately depth-tagging real-time electrical conductivity and particle size distribution data. This system was designed specifically to support microparticle analysis of the WAIS Divide WDC06A deep ice core, but many of the subsystems are applicable to more general ice core melting operations. Major system components include: a rotary encoder to measure ice core melt displacement with 0.1 millimeter accuracy, a meltwater tracking system to assign core depths to conductivity, particle and sample vial data, an optical debubbler level control system to protect the Abakus laser particle counter from damage due to air bubbles, a Rabbit 3700 microcontroller which communicates with a host PC, collects encoder and optical sensor data and autonomously operates Gilson peristaltic pumps and fraction collectors to provide automatic sample handling, melt monitor control software operating on a standard PC allowing the user to control and view the status of the system, data logging software operating on the same PC to collect data from the melting, electrical conductivity and microparticle measurement systems. Because microparticle samples can easily be contaminated, we use optical air bubble sensors and high resolution ice core density profiles to guide the melting process. The combination of these data allow us to analyze melt head performance, minimize outer-to-inner fraction contamination and avoid melt head flooding. The WAIS Melt Monitor system allows the collection of real-time, sub-annual microparticle and electrical conductivity data while producing and storing enough sample for traditional Coulter-Counter particle measurements as well long term acid leaching of bioactive metals (e.g., Fe, Co, Cd, Cu, Zn) prior to chemical analysis.

30 CFR 784.22 - Geologic information.

Code of Federal Regulations, 2014 CFR

2014-07-01

... be collected and analyzed from test borings; drill cores; or fresh, unweathered, uncontaminated... not be removed, samples shall be collected and analyzed from test borings or drill cores to provide...

30 CFR 784.22 - Geologic information.

Code of Federal Regulations, 2013 CFR

2013-07-01

... be collected and analyzed from test borings; drill cores; or fresh, unweathered, uncontaminated... not be removed, samples shall be collected and analyzed from test borings or drill cores to provide...

Diversity captured in the USDA-ARS National Plant Germplasm System apple core collection

USDA-ARS?s Scientific Manuscript database

Core collections have been used widely in genetic resources to provide a representative and compact sample to use in breeding evaluation. In the 1990s a core set was developed by the USDA-ARS Plant Genetic Resources Unit (PGRU) in Geneva, NY. Using data available at the time, a core set was develo...

Wetland paleoecological study of southwest coastal Louisiana: sediment cores and diatom calibration dataset

USGS Publications Warehouse

Smith, Kathryn E. L.; Flocks, James G.; Steyer, Gregory D.; Piazza, Sarai C.

2015-01-01

Wetland sediment data were collected in 2009 and 2010 throughout the southwest Louisiana Chenier Plain as part of a pilot study to develop a diatom-based proxy for past wetland water chemistry and the identification of sediment deposits from tropical storms. The complete dataset includes forty-six surface sediment samples and nine sediment cores. The surface sediment samples were collected in fresh, intermediate, and brackish marsh and are located coincident with Coastwide Reference Monitoring System (CRMS) sites. The nine sediment cores were collected at the Rockefeller Wildlife Refuge (RWR) located in Grand Chenier, La.

Construction of Core Collections Suitable for Association Mapping to Optimize Use of Mediterranean Olive (Olea europaea L.) Genetic Resources

PubMed Central

El Bakkali, Ahmed; Haouane, Hicham; Moukhli, Abdelmajid; Costes, Evelyne; Van Damme, Patrick; Khadari, Bouchaib

2013-01-01

Phenotypic characterisation of germplasm collections is a decisive step towards association mapping analyses, but it is particularly expensive and tedious for woody perennial plant species. Characterisation could be more efficient if focused on a reasonably sized subset of accessions, or so-called core collection (CC), reflecting the geographic origin and variability of the germplasm. The questions that arise concern the sample size to use and genetic parameters that should be optimized in a core collection to make it suitable for association mapping. Here we investigated these questions in olive (Olea europaea L.), a perennial fruit species. By testing different sampling methods and sizes in a worldwide olive germplasm bank (OWGB Marrakech, Morocco) containing 502 unique genotypes characterized by nuclear and plastid loci, a two-step sampling method was proposed. The Shannon-Weaver diversity index was found to be the best criterion to be maximized in the first step using the Core Hunter program. A primary core collection of 50 entries (CC50) was defined that captured more than 80% of the diversity. This latter was subsequently used as a kernel with the Mstrat program to capture the remaining diversity. 200 core collections of 94 entries (CC94) were thus built for flexibility in the choice of varieties to be studied. Most entries of both core collections (CC50 and CC94) were revealed to be unrelated due to the low kinship coefficient, whereas a genetic structure spanning the eastern and western/central Mediterranean regions was noted. Linkage disequilibrium was observed in CC94 which was mainly explained by a genetic structure effect as noted for OWGB Marrakech. Since they reflect the geographic origin and diversity of olive germplasm and are of reasonable size, both core collections will be of major interest to develop long-term association studies and thus enhance genomic selection in olive species. PMID:23667437

Results of chemical and isotopic analyses of sediment and water from alluvium of the Canadian River near a closed municipal landfill, Norman, Oklahoma

USGS Publications Warehouse

Breit, George N.; Tuttle, Michele L.W.; Cozzarelli, Isabelle M.; Christenson, Scott C.; Jaeschke, Jeanne B.; Fey, David L.; Berry, Cyrus J.

2005-01-01

Results of physical and chemical analyses of sediment and water collected near a closed municipal landfill at Norman, Oklahoma are presented in this report. Sediment analyses are from 40 samples obtained by freeze-shoe coring at 5 sites, and 14 shallow (depth <1.3 m) sediment samples. The sediment was analyzed to determine grain size, the abundance of extractable iron species and the abundances and isotopic compositions of forms of sulfur. Water samples included pore water from the freeze-shoe core, ground water, and surface water. Pore water from 23 intervals of the core was collected and analyzed for major and trace dissolved species. Thirteen ground-water samples obtained from wells within a few meters of the freeze-shoe core sites and one from the landfill were analyzed for major and trace elements as well as the sulfur and oxygen isotope composition of dissolved sulfate. Samples of surface water were collected at 10 sites along the Canadian River from New Mexico to central Oklahoma. These river-water samples were analyzed for major elements, trace elements, and the isotopic composition of dissolved sulfate.

Cores to the rescue: how old cores enable new science

NASA Astrophysics Data System (ADS)

Ito, E.; Noren, A. J.; Brady, K.

2016-12-01

The value of archiving scientific specimens and collections for the purpose of enabling further research using new analytical techniques, resolving conflicting results, or repurposing them for entirely new research, is often discussed in abstract terms. We all agree that samples with adequate metadata ought to be archived systematically for easy access, for a long time and stored under optimal conditions. And yet, as storage space fills, there is a temptation to cull the collection, or when a researcher retires, to discard the collection unless the researcher manages to make his or her own arrangement for the collection to be accessioned elsewhere. Nobody has done anything with these samples in over 20 years! Who would want them? It turns out that plenty of us do want them, if we know how to find them and if they have sufficient metadata to assess past work and suitability for new analyses. The LacCore collection holds over 33 km of core from >6700 sites in diverse geographic locations worldwide with samples collected as early as 1950s. From these materials, there are many examples to illustrate the scientific value of archiving geologic samples. One example that benefitted Ito personally were cores from Lakes Mirabad and Zeribar, Iran, acquired in 1963 by Herb Wright and his associates. Several doctoral and postdoctoral students generated and published paleoecological reconstructions based on cladocerans, diatoms, pollen or plant macrofossils, mostly between 1963 and 1967. The cores were resampled in 1990s by a student being jointly advised by Wright and Ito for oxygen isotope analysis of endogenic calcite. The results were profitably compared with pollen and the results published in 2001 and 2006. From 1979 until very recently, visiting Iran for fieldwork was not pallowed for US scientists. Other examples will be given to further illustrate the power of archived samples to advance science.

Geochemical data for core and bottom-sediment samples collected in 2007 from Grand Lake O' the Cherokees, northeast Oklahoma

USGS Publications Warehouse

Fey, David L.; Becker, Mark F.; Smith, Kathleen S.

2010-01-01

Grand Lake O' the Cherokees is a large reservoir in northeast Oklahoma, below the confluence of the Neosho and Spring Rivers, both of which drain the Tri-State Mining District to the north. The Tri-State district covers an area of 1,200 mi2 (3,100 km2) and comprises Mississippi Valley-type lead-zinc deposits. A result of 120 years of mining activity is an estimated 75 million tons of processed mine tailings (chat) remaining in the district. Concerns of sediment quality and the possibility of human exposure to cadmium and lead through eating fish have led to several studies of the sediments in the Tri-State district. In order to record the transport and deposition of metals from the Tri-State district by the Spring and Neosho Rivers into Grand Lake O' the Cherokees, the U.S. Geological Survey collected 11 sediment cores and 15 bottom-sediment samples in September 2007. Subsamples from five selected cores and the bottom-sediment samples were analyzed for major and trace elements and forms of carbon. The sediment samples collected from the sediment-water interface had larger average concentrations of zinc, cadmium, and lead than local background. The core collected from the Spring River had the largest concentrations of mining-related elements. A core collected just south of Twin Bridges State Park, at the confluence of the Spring and Neosho Rivers, showed a mixing zone with more mining-related elements coming from the Spring River side. The element zinc showed the most definitive patterns in graphs depicting concentration-versus-depth profiles. A core collected from the main body of the reservoir showed affected sediment down to a depth of 85 cm (33 in). This core and two others appear to have penetrated to below mining-affected sediment.

Evaluating Core Quality for a Mars Sample Return Mission

NASA Technical Reports Server (NTRS)

Weiss, D. K.; Budney, C.; Shiraishi, L.; Klein, K.

2012-01-01

Sample return missions, including the proposed Mars Sample Return (MSR) mission, propose to collect core samples from scientifically valuable sites on Mars. These core samples would undergo extreme forces during the drilling process, and during the reentry process if the EEV (Earth Entry Vehicle) performed a hard landing on Earth. Because of the foreseen damage to the stratigraphy of the cores, it is important to evaluate each core for rock quality. However, because no core sample return mission has yet been conducted to another planetary body, it remains unclear as to how to assess the cores for rock quality. In this report, we describe the development of a metric designed to quantitatively assess the mechanical quality of any rock cores returned from Mars (or other planetary bodies). We report on the process by which we tested the metric on core samples of Mars analogue materials, and the effectiveness of the core assessment metric (CAM) in assessing rock core quality before and after the cores were subjected to shocking (g forces representative of an EEV landing).

Toxicity of sediment cores collected from the Ashtabula River in northeastern Ohio, USA, to the amphipod Hyalella azteca

USGS Publications Warehouse

Ingersoll, C.G.; Kemble, N.E.; Kunz, J.L.; Brumbaugh, W.G.; MacDonald, D.D.; Smorong, D.

2009-01-01

This study was conducted to support a Natural Resource Damage Assessment and Restoration project associated with the Ashtabula River in Ohio. The objective of the study was to evaluate the chemistry and toxicity of 50 sediment samples obtained from five cores collected from the Ashtabula River (10 samples/core, with each 10-cm-diameter core collected to a total depth of about 150 cm). Effects of chemicals of potential concern (COPCs) measured in the sediment samples were evaluated by measuring whole-sediment chemistry and whole-sediment toxicity in the sediment samples (including polycyclic aromatic hydrocarbons [PAHs], polychlorinated biphenyls [PCBs], organochlorine pesticides, and metals). Effects on the amphipod Hyalella azteca at the end of a 28-day sediment toxicity test were determined by comparing survival or length of amphipods in individual sediment samples in the cores to the range of responses of amphipods exposed to selected reference sediments that were also collected from the cores. Mean survival or length of amphipods was below the lower limit of the reference envelope in 56% of the sediment samples. Concentrations of total PCBs alone in some samples or concentrations of total PAHs alone in other samples were likely high enough to have caused the reduced survival or length of amphipods (i.e., concentrations of PAHs or PCBs exceeded mechanistically based and empirically based sediment quality guidelines). While elevated concentrations of ammonia in pore water may have contributed to the reduced length of amphipods, it is unlikely that the reduced length was caused solely by elevated ammonia (i.e., concentrations of ammonia were not significantly correlated with the concentrations of PCBs or PAHs and concentrations of ammonia were elevated both in the reference sediments and in the test sediments). Results of this study show that PAHs, PCBs, and ammonia are the primary COPCs that are likely causing or substantially contributing to the toxicity to sediment-dwelling organisms. ?? 2009 US Government.

Characterization Data Package for Containerized Sludge Samples Collected from Engineered Container SCS-CON-210

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fountain, Matthew S.; Fiskum, Sandra K.; Baldwin, David L.

This data package contains the K Basin sludge characterization results obtained by Pacific Northwest National Laboratory during processing and analysis of four sludge core samples collected from Engineered Container SCS-CON-210 in 2010 as requested by CH2M Hill Plateau Remediation Company. Sample processing requirements, analytes of interest, detection limits, and quality control sample requirements are defined in the KBC-33786, Rev. 2. The core processing scope included reconstitution of a sludge core sample distributed among four to six 4-L polypropylene bottles into a single container. The reconstituted core sample was then mixed and subsampled to support a variety of characterization activities. Additionalmore » core sludge subsamples were combined to prepare a container composite. The container composite was fractionated by wet sieving through a 2,000 micron mesh and a 500-micron mesh sieve. Each sieve fraction was sampled to support a suite of analyses. The core composite analysis scope included density determination, radioisotope analysis, and metals analysis, including the Waste Isolation Pilot Plant Hazardous Waste Facility Permit metals (with the exception of mercury). The container composite analysis included most of the core composite analysis scope plus particle size distribution, particle density, rheology, and crystalline phase identification. A summary of the received samples, core sample reconstitution and subsampling activities, container composite preparation and subsampling activities, physical properties, and analytical results are presented. Supporting data and documentation are provided in the appendices. There were no cases of sample or data loss and all of the available samples and data are reported as required by the Quality Assurance Project Plan/Sampling and Analysis Plan.« less

Results of the Chemical and Isotopic Analyses of Sediment and Ground Water from Alluvium of the Canadian River Near a Closed Municipal Landfill, Norman, Oklahoma, Part 2

USGS Publications Warehouse

Breit, George N.; Tuttle, Michele L.W.; Cozzarelli, Isabelle M.; Berry, Cyrus J.; Christenson, Scott C.; Jaeschke, Jeanne B.

2008-01-01

Analytical results on sediment and associated ground water from the Canadian River alluvium collected subsequent to those described in Breit and others (2005) are presented in this report. The data presented herein were collected primarily to evaluate the iron and sulfur species within the sediment at well sites IC 36, IC 54, and IC South located at the USGS Norman Landfill study site. Cored sediment and water samples were collected during October 2004 and April 2005. The 52 sediment samples collected by coring were analyzed to determine grain size, the abundance of extractable iron species, and the abundance of sulfur forms and their isotopic compositions. Ground water was collected from cluster wells that sampled ground water from 11 to 15 screened intervals at each of the three sites. The depth range of the wells overlapped the interval of cored sediment. Concentrations of major ions, dissolved organic carbon (DOC), ammonium, and iron are reported with pH, specific conductance, and the isotopic composition of the water for the 75 water samples analyzed. Dissolved sulfate in selected water samples was analyzed to determine its sulfur and oxygen isotope composition.

Oil-shale data, cores, and samples collected by the U.S. geological survey through 1989

USGS Publications Warehouse

Dyni, John R.; Gay, Frances; Michalski, Thomas C.; ,

1990-01-01

The U.S. Geological Survey has acquired a large collection of geotechnical data, drill cores, and crushed samples of oil shale from the Eocene Green River Formation in Colorado, Wyoming, and Utah. The data include about 250,000 shale-oil analyses from about 600 core holes. Most of the data is from Colorado where the thickest and highest-grade oil shales of the Green River Formation are found in the Piceance Creek basin. Other data on file but not yet in the computer database include hundreds of lithologic core descriptions, geophysical well logs, and mineralogical and geochemical analyses. The shale-oil analyses are being prepared for release on floppy disks for use on microcomputers. About 173,000 lineal feet of drill core of oil shale and associated rocks, as well as 100,000 crushed samples of oil shale, are stored at the Core Research Center, U.S. Geological Survey, Lakewood, Colo. These materials are available to the public for research.

Contamination Control of Freeze Shoe Coring System for Collection of Aquifer Sands

NASA Astrophysics Data System (ADS)

Homola, K.; van Geen, A.; Spivack, A. J.; Grzybowski, B.; Schlottenmier, D.

2017-12-01

We have developed and tested an original device, the freeze-shoe coring system, designed to recover undisturbed samples of water contained in sand-dominated aquifers. Aquifer sands are notoriously difficult to collect together with porewater from coincident depths, as high hydraulic permeability leads to water drainage and mixing during retrieval. Two existing corer designs were reconfigured to incorporate the freeze-shoe system; a Hydraulic Piston (HPC) and a Rotary (RC) Corer. Once deployed, liquid CO­2 contained in an interior tank is channeled to coils at the core head where it changes phase, rapidly cooling the deepest portion of the core. The resulting frozen core material impedes water loss during recovery. We conducted contamination tests to examine the integrity of cores retrieved during a March 2017 yard test deployment. Perfluorocarbon tracer (PFC) was added to the drill fluid and recovered cores were subsampled to capture the distribution of PFC throughout the core length and interior. Samples were collected from two HPC and one RC core and analyzed for PFC concentrations. The lowest porewater contamination, around 0.01% invasive fluid, occurs in the center of both HPC cores. The greatest contamination (up to 10%) occurs at the disturbed edges where core material contacts drill fluid. There was lower contamination in the core interior than top, bottom, and edges, as well as significantly lower contamination in HPC cores that those recovered with the RC. These results confirm that the freeze-shoe system, proposed for field test deployments in West Bengal, India, can successfully collect intact porewater and sediment material with minimal if any contamination from drill fluid.

St. Petersburg Coastal and Marine Science Center's Core Archive Portal

USGS Publications Warehouse

Reich, Chris; Streubert, Matt; Dwyer, Brendan; Godbout, Meg; Muslic, Adis; Umberger, Dan

2012-01-01

This Web site contains information on rock cores archived at the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center (SPCMSC). Archived cores consist of 3- to 4-inch-diameter coral cores, 1- to 2-inch-diameter rock cores, and a few unlabeled loose coral and rock samples. This document - and specifically the archive Web site portal - is intended to be a 'living' document that will be updated continually as additional cores are collected and archived. This document may also contain future references and links to a catalog of sediment cores. Sediment cores will include vibracores, pushcores, and other loose sediment samples collected for research purposes. This document will: (1) serve as a database for locating core material currently archived at the USGS SPCMSC facility; (2) provide a protocol for entry of new core material into the archive system; and, (3) set the procedures necessary for checking out core material for scientific purposes. Core material may be loaned to other governmental agencies, academia, or non-governmental organizations at the discretion of the USGS SPCMSC curator.

Hydraulic Conductivity Measurements Barrow 2014

DOE Data Explorer

Katie McKnight; Tim Kneafsey; Craig Ulrich; Jil Geller

2015-02-22

Six individual ice cores were collected from Barrow Environmental Observatory in Barrow, Alaska, in May of 2013 as part of the Next Generation Ecosystem Experiment (NGEE). Each core was drilled from a different location at varying depths. A few days after drilling, the cores were stored in coolers packed with dry ice and flown to Lawrence Berkeley National Laboratory (LBNL) in Berkeley, CA. 3-dimensional images of the cores were constructed using a medical X-ray computed tomography (CT) scanner at 120kV. Hydraulic conductivity samples were extracted from these cores at LBNL Richmond Field Station in Richmond, CA, in February 2014 by cutting 5 to 8 inch segments using a chop saw. Samples were packed individually and stored at freezing temperatures to minimize any changes in structure or loss of ice content prior to analysis. Hydraulic conductivity was determined through falling head tests using a permeameter [ELE International, Model #: K-770B]. After approximately 12 hours of thaw, initial falling head tests were performed. Two to four measurements were collected on each sample and collection stopped when the applied head load exceeded 25% change from the original load. Analyses were performed between 2 to 3 times for each sample. The final hydraulic conductivity calculations were computed using methodology of Das et al., 1985.

Perfluoroalkyl substances and extractable organic fluorine in surface sediments and cores from Lake Ontario.

PubMed

Yeung, Leo W Y; De Silva, Amila O; Loi, Eva I H; Marvin, Chris H; Taniyasu, Sachi; Yamashita, Nobuyoshi; Mabury, Scott A; Muir, Derek C G; Lam, Paul K S

2013-09-01

Fourteen perfluoroalkyl substances (PFASs) including short-chain perfluorocarboxylates (PFCAs, C4-C6) and perfluoroalkane sulfonates (PFSAs, C4 and C6) were measured in surface sediment samples from 26 stations collected in 2008 and sediment core samples from three stations (Niagara, Mississauga, and Rochester basins) collected in 2006 in Lake Ontario. Perfluorooctanesulfonate (PFOS), perfluorooctanoate (PFOA), perfluorononanoate (PFNA), perfluorodecanoate (PFDA), and perfluoroundecanoate (PFUnDA) were detected in all 26 surface sediment samples, whereas perfluorohexane sulfonate (PFHxS), perfluorooctane sulfonamide (FOSA), perfluorododecanoate (PFDoDA) and perfluorobutanoate (PFBA) were detected in over 70% of the surface sediment samples. PFOS was detected in all of the sediment core samples (range: 0.492-30.1ngg(-1) d.w.) over the period 1952-2005. The C8 to C11 PFCAs, FOSA, and PFBA increased in early 1970s. An overall increasing trend in sediment PFAS concentrations/fluxes from older to more recently deposited sediments was evident in the three sediment cores. The known PFCAs and PFSAs accounted for 2-44% of the anionic fraction of the extractable organic fluorine in surface sediment, suggesting that a large proportion of fluorine in this fraction remained unknown. Sediment core samples collected from Niagara basin showed an increase in unidentified organic fluorine in recent years (1995-2006). These results suggest that the use and manufacture of fluorinated organic compounds other than known PFCAs and PFSAs has diversified and increased. © 2013.

Contaminant Gradients in Trees: Directional Tree Coring Reveals Boundaries of Soil and Soil-Gas Contamination with Potential Applications in Vapor Intrusion Assessment.

PubMed

Wilson, Jordan L; Samaranayake, V A; Limmer, Matthew A; Schumacher, John G; Burken, Joel G

2017-12-19

Contaminated sites pose ecological and human-health risks through exposure to contaminated soil and groundwater. Whereas we can readily locate, monitor, and track contaminants in groundwater, it is harder to perform these tasks in the vadose zone. In this study, tree-core samples were collected at a Superfund site to determine if the sample-collection location around a particular tree could reveal the subsurface location, or direction, of soil and soil-gas contaminant plumes. Contaminant-centroid vectors were calculated from tree-core data to reveal contaminant distributions in directional tree samples at a higher resolution, and vectors were correlated with soil-gas characterization collected using conventional methods. Results clearly demonstrated that directional tree coring around tree trunks can indicate gradients in soil and soil-gas contaminant plumes, and the strength of the correlations were directly proportionate to the magnitude of tree-core concentration gradients (spearman's coefficient of -0.61 and -0.55 in soil and tree-core gradients, respectively). Linear regression indicates agreement between the concentration-centroid vectors is significantly affected by in planta and soil concentration gradients and when concentration centroids in soil are closer to trees. Given the existing link between soil-gas and vapor intrusion, this study also indicates that directional tree coring might be applicable in vapor intrusion assessment.

Contaminant gradients in trees: Directional tree coring reveals boundaries of soil and soil-gas contamination with potential applications in vapor intrusion assessment

USGS Publications Warehouse

Wilson, Jordan L.; Samaranayake, V.A.; Limmer, Matthew A.; Schumacher, John G.; Burken, Joel G.

2017-01-01

Contaminated sites pose ecological and human-health risks through exposure to contaminated soil and groundwater. Whereas we can readily locate, monitor, and track contaminants in groundwater, it is harder to perform these tasks in the vadose zone. In this study, tree-core samples were collected at a Superfund site to determine if the sample-collection location around a particular tree could reveal the subsurface location, or direction, of soil and soil-gas contaminant plumes. Contaminant-centroid vectors were calculated from tree-core data to reveal contaminant distributions in directional tree samples at a higher resolution, and vectors were correlated with soil-gas characterization collected using conventional methods. Results clearly demonstrated that directional tree coring around tree trunks can indicate gradients in soil and soil-gas contaminant plumes, and the strength of the correlations were directly proportionate to the magnitude of tree-core concentration gradients (spearman’s coefficient of -0.61 and -0.55 in soil and tree-core gradients, respectively). Linear regression indicates agreement between the concentration-centroid vectors is significantly affected by in-planta and soil concentration gradients and when concentration centroids in soil are closer to trees. Given the existing link between soil-gas and vapor intrusion, this study also indicates that directional tree coring might be applicable in vapor intrusion assessment.

Tank Vapor Sampling and Analysis Data Package for Tank 241-Z-361 Sampled 09/22/1999 and 09/271999 During Sludge Core Removal

DOE Office of Scientific and Technical Information (OSTI.GOV)

VISWANATH, R.S.

This data package presents sampling data and analytical results from the September 22 and 27, 1999, headspace vapor sampling of Hanford Site Tank 241-2-361 during sludge core removal. The Lockheed Martin Hanford Corporation (LMHC) sampling team collected the samples and Waste Management Laboratory (WML) analyzed the samples in accordance with the requirements specified in the 241-2361 Sludge Characterization Sampling and Analysis Plan, (SAP), HNF-4371, Rev. 1, (Babcock and Wilcox Hanford Corporation, 1999). Six SUMMA{trademark} canister samples were collected on each day (1 ambient field blank and 5 tank vapor samples collected when each core segment was removed). The samples weremore » radiologically released on September 28 and October 4, 1999, and received at the laboratory on September 29 and October 6, 1999. Target analytes were not detected at concentrations greater than their notification limits as specified in the SAP. Analytical results for the target analytes and tentatively identified compounds (TICs) are presented in Section 2.2.2 starting on page 2B-7. Three compounds identified for analysis in the SAP were analyzed as TICs. The discussion of this modification is presented in Section 2.2.1.2.« less

GenoCore: A simple and fast algorithm for core subset selection from large genotype datasets.

PubMed

Jeong, Seongmun; Kim, Jae-Yoon; Jeong, Soon-Chun; Kang, Sung-Taeg; Moon, Jung-Kyung; Kim, Namshin

2017-01-01

Selecting core subsets from plant genotype datasets is important for enhancing cost-effectiveness and to shorten the time required for analyses of genome-wide association studies (GWAS), and genomics-assisted breeding of crop species, etc. Recently, a large number of genetic markers (>100,000 single nucleotide polymorphisms) have been identified from high-density single nucleotide polymorphism (SNP) arrays and next-generation sequencing (NGS) data. However, there is no software available for picking out the efficient and consistent core subset from such a huge dataset. It is necessary to develop software that can extract genetically important samples in a population with coherence. We here present a new program, GenoCore, which can find quickly and efficiently the core subset representing the entire population. We introduce simple measures of coverage and diversity scores, which reflect genotype errors and genetic variations, and can help to select a sample rapidly and accurately for crop genotype dataset. Comparison of our method to other core collection software using example datasets are performed to validate the performance according to genetic distance, diversity, coverage, required system resources, and the number of selected samples. GenoCore selects the smallest, most consistent, and most representative core collection from all samples, using less memory with more efficient scores, and shows greater genetic coverage compared to the other software tested. GenoCore was written in R language, and can be accessed online with an example dataset and test results at https://github.com/lovemun/Genocore.

Low Cost High Value Mars Sample to Orbit

NASA Astrophysics Data System (ADS)

Adler, M.; Guernsey, C.; Sell, S.; Sengupta, A.; Shiraishi, L.

2012-06-01

A mid-size lander, rover, and MAV using the MSL CEDL architecture and a 3-stage Falcon 9 can collect scientifically high-quality Mars surface samples consisting of rock cores collected by a roving platform, and deliver those samples to Mars orbit.

Rescuing the Cahoon Mine drill cores: Opportunities for modern mapping of the ca. 1.7 Ga Freedom Formation in southern Wisconsin

NASA Astrophysics Data System (ADS)

Stanley, V.; Stewart, E.

2016-12-01

Rock cores collected during historic mineral exploration can provide invaluable data for modern analyses, but only if the samples are properly curated. The Cahoon Mine operated in Baraboo, WI during the 1910's and produced iron ore from the ca. 1.7 Ga Freedom Formation. The Freedom Formation is part of the well-known Baraboo-interval stratigraphy and is only present in the subsurface of Wisconsin (Weidman, 1904). Seventeen exploratory drill cores were rescued by Wisconsin Geological and Natural History Survey (WGNHS) from the original drying house at the mine site. The condition of the containers endangered the stratigraphic context of the collection; identifiers and depth markings were often obscured or lost. The individual core pieces were coated in residue and dust. Most of what is known about the Freedom Formation is from core logs and master's theses from the early 1900's (Leith, 1935; Schmidt, 1951). Ongoing subsurface mapping of the Baraboo-interval sediments and underlying basement of southern Wisconsin integrates new and existing subsurface and regional geophysical datasets. Mapping involves calibrating unique signals in regional aeromagnetic data to known lithology from drill core and cuttings. The Freedom Formation is especially important in this process as its iron-rich composition and regional continuity causes it to have a somewhat unique signal in regional aeromagnetic data. The Cahoon Mine cores in the WGNHS repository are the most extensive collection of physical samples from the Freedom Formation still in existence. We are in the process of curating the cores to facilitate their use in ongoing bedrock mapping. Today the cost and logistics of extensive sampling of this unit makes the existing core collection irreplaceable. We transferred the material to new containers, digitally recorded metadata, and created archival labels. As a result of this effort, the Cahoon Mine cores are now stored in a format that is physically and digitally accessible.

Core Hunter 3: flexible core subset selection.

PubMed

De Beukelaer, Herman; Davenport, Guy F; Fack, Veerle

2018-05-31

Core collections provide genebank curators and plant breeders a way to reduce size of their collections and populations, while minimizing impact on genetic diversity and allele frequency. Many methods have been proposed to generate core collections, often using distance metrics to quantify the similarity of two accessions, based on genetic marker data or phenotypic traits. Core Hunter is a multi-purpose core subset selection tool that uses local search algorithms to generate subsets relying on one or more metrics, including several distance metrics and allelic richness. In version 3 of Core Hunter (CH3) we have incorporated two new, improved methods for summarizing distances to quantify diversity or representativeness of the core collection. A comparison of CH3 and Core Hunter 2 (CH2) showed that these new metrics can be effectively optimized with less complex algorithms, as compared to those used in CH2. CH3 is more effective at maximizing the improved diversity metric than CH2, still ensures a high average and minimum distance, and is faster for large datasets. Using CH3, a simple stochastic hill-climber is able to find highly diverse core collections, and the more advanced parallel tempering algorithm further increases the quality of the core and further reduces variability across independent samples. We also evaluate the ability of CH3 to simultaneously maximize diversity, and either representativeness or allelic richness, and compare the results with those of the GDOpt and SimEli methods. CH3 can sample equally representative cores as GDOpt, which was specifically designed for this purpose, and is able to construct cores that are simultaneously more diverse, and either are more representative or have higher allelic richness, than those obtained by SimEli. In version 3, Core Hunter has been updated to include two new core subset selection metrics that construct cores for representativeness or diversity, with improved performance. It combines and outperforms the strengths of other methods, as it (simultaneously) optimizes a variety of metrics. In addition, CH3 is an improvement over CH2, with the option to use genetic marker data or phenotypic traits, or both, and improved speed. Core Hunter 3 is freely available on http://www.corehunter.org .

30 CFR 870.18 - General rules for calculating excess moisture.

Code of Federal Regulations, 2011 CFR

2011-07-01

... Collection of Coal Samples from Core; and, D1412-93, Standard Test Method for Equilibrium Moisture of Coal at... shipment or use. (5) Core sample means a cylindrical sample of coal that represents the thickness of a coal seam penetrated by drilling according to ASTM standard D5192-91. (6) Correction factor means the...

30 CFR 870.18 - General rules for calculating excess moisture.

Code of Federal Regulations, 2012 CFR

2012-07-01

... Collection of Coal Samples from Core; and, D1412-93, Standard Test Method for Equilibrium Moisture of Coal at... shipment or use. (5) Core sample means a cylindrical sample of coal that represents the thickness of a coal seam penetrated by drilling according to ASTM standard D5192-91. (6) Correction factor means the...

30 CFR 870.18 - General rules for calculating excess moisture.

Code of Federal Regulations, 2014 CFR

2014-07-01

... Collection of Coal Samples from Core; and, D1412-93, Standard Test Method for Equilibrium Moisture of Coal at... shipment or use. (5) Core sample means a cylindrical sample of coal that represents the thickness of a coal seam penetrated by drilling according to ASTM standard D5192-91. (6) Correction factor means the...

30 CFR 870.18 - General rules for calculating excess moisture.

Code of Federal Regulations, 2013 CFR

2013-07-01

... Collection of Coal Samples from Core; and, D1412-93, Standard Test Method for Equilibrium Moisture of Coal at... shipment or use. (5) Core sample means a cylindrical sample of coal that represents the thickness of a coal seam penetrated by drilling according to ASTM standard D5192-91. (6) Correction factor means the...

Collection, analysis, and age-dating of sediment cores from 56 U.S. lakes and reservoirs sampled by the U.S. Geological Survey, 1992-2001

USGS Publications Warehouse

Van Metre, Peter; Wilson, Jennifer T.; Fuller, Christopher C.; Callender, Edward; Mahler, Barbara J.

2004-01-01

The U.S. Geological Survey Reconstructed Trends National Synthesis study collected sediment cores from 56 lakes and reservoirs between 1992 and 2001 across the United States. Most of the sampling was conducted as part of the National Water-Quality Assessment (NAWQA) Program. The primary objective of the study was to determine trends in particle-associated contaminants in response to urbanization; 47 of the 56 lakes are in or near one of 20 U.S. cities. Sampling was done with gravity, piston, and box corers from boats and push cores from boats or by wading, depending on the depth of water and thickness of sediment being sampled. Chemical analyses included major and trace elements, organochlorine pesticides, polychlorinated biphenyls, polycyclic aromatic hydrocarbons, cesium-137, and lead-210. Age-dating of the cores was done on the basis of radionuclide analyses and the position of the pre-reservoir land surface in the reservoir and, in a few cases, other chemical or lithologic depth-date markers. Dates were assigned in many cores on the basis of assumed constant mass accumulation between known depth-date markers. Dates assigned were supported using a variety of other date markers including first occurrence and peak concentrations of DDT and polychlorinated biphenyls and peak concentration of lead. A qualitative rating was assigned to each core on the basis of professional judgment to indicate the reliability of age assignments. A total of 122 cores were collected from the 56 lakes and age dates were assigned to 113 of them, representing 54 of the 56 lakes. Seventy-four of the 122 cores (61 percent) received a good rating for the assigned age dates, 28 cores (23 percent) a fair rating, and 11 cores (9 percent) a poor rating; nine cores (7 percent) had no dates assigned. An analysis of the influence of environmental factors on the apparent quality of age-dating of the cores concluded that the most important factor was the mass accumulation rate (MAR) of sediment: the greater the MAR, the better the temporal discretization in the samples and the less important the effects of postdepositional sediment disturbance. These age-dated sediment cores provide the basis for local-, regional-, and national-scale interpretations of water-quality trends.

Description, dissection, and subsampling of Apollo 14 core sample 14230

NASA Technical Reports Server (NTRS)

Fryxell, R.; Heiken, G.

1971-01-01

Core sample 14230, collected at Triplet Crater near the Fra Mauro landing site of the Apollo 14 mission, was dissected in greater detail than any previous core. Sediment from the actual lunar surface was missing, and 6.7 grams of sediment were removed from the base of the core for a portion of the biotest prime sample. Upper and lower portions of the original 70.7-gram core (12.5 centimeters long) were fractured excessively but not mixed stratigraphically. Three major morphologic units and 11 subdivisions were recognized. Dissection provided 55 subsamples in addition to three others made by removing longitudinal sections of the core impregnated with n-butyl methacrylate for use as a permanent documentary record and for studies requiring particles of known orientation.

Benthic macrofauna data for San Francisco Bay, California, September 1986

USGS Publications Warehouse

Schemel, Laurence E.; Thompson, J.K.; Harmon, J.G.; Yost, B.T.

1995-01-01

Benthic macrofauna were collected during September 1986 to evaluate locations for long-term monitoring stations as part of the U.S. Geological Survey Regional Effects Monitoring Program in San Francisco Bay, California. Three to ten replicate samples were collected with a modified Van Veen sampler (0.05 m2 area) at ten locations. One box core sample (0.06 m2 area) was collected at seven to the ten locations. Six of the box core samples were split into an upper 10 cm sample and a deeper sample before analysis. Macrofauna specimens were identified to the lowest possible taxon, usually genus and species, then counted. An average of 88 percent of the benthic macrofauna specimens were identified to the species level. The fraction identified varied among stations from 54 to 98 percent. Nematodes and oligochaetes accounted for most of the unidentified specimens. Relative to the total number of species identified in five replicates at each location, an average of 90 percent of the species were collected with three replicates. In general, species with high to moderate abundances were present in all replicates, and species collected only after three or more replicates averaged less than one specimen per replicate. Results from the box cores showed that the dominant species were most abundant in the upper 10 cm, the depth of sediment that can be adequately sampled with a modified Van Veen sampler. On the basis of the number of species and their abundances at each location, seven of the ten locations were selected for sampling in the regular program, which began in March 1987.

Mineralogy of selected sedimentary interbeds at or near the Idaho National Engineering Laboratory, Idaho

USGS Publications Warehouse

Reed, Michael F.; Bartholomay, Roy C.

1994-01-01

The U.S. Geological Survey (USGS) Project Office at the Idaho National Engineering Laboratory (INEL), in cooperation with the U.S. Department of Energy and Idaho State University, analyzed 66 samples from sedimentary interbed cores during a 38-month period beginning in October 1990 to determine bulk and clay mineralogy. These cores had been collected from 19 sites in the Big Lost River Basin, 2 sites in the Birch Creek Basin, and 1 site in the Mud Lake Basin, and were archived at the USGS lithologic core library at the INEL. Mineralogy data indicate that the core samples from the Big Lost River Basin have larger mean and median percentages of quartz, total feldspar, and total clay minerals, but smaller mean and median percentages of calcite than the core samples from the Birch Creek Basin. Core samples from the Mud Lake Basin have abundant quartz, total feldspar, calcite, and total clay minerals.

Analytical results from samples collected during coal-bed methane exploration drilling in Caldwell Parish, Louisiana

USGS Publications Warehouse

Warwick, Peter D.; Breland, F. Clayton; Hackley, Paul C.; Dulong, Frank T.; Nichols, Douglas J.; Karlsen, Alexander W.; Bustin, R. Marc; Barker, Charles E.; Willett, Jason C.; Trippi, Michael H.

2006-01-01

In 2001, and 2002, the U.S. Geological Survey (USGS) and the Louisiana Geological Survey (LGS), through a Cooperative Research and Development Agreement (CRADA) with Devon SFS Operating, Inc. (Devon), participated in an exploratory drilling and coring program for coal-bed methane in north-central Louisiana. The USGS and LGS collected 25 coal core and cuttings samples from two coal-bed methane test wells that were drilled in west-central Caldwell Parish, Louisiana. The purpose of this report is to provide the results of the analytical program conducted on the USGS/LGS samples. The data generated from this project are summarized in various topical sections that include: 1. molecular and isotopic data from coal gas samples; 2. results of low-temperature ashing and X-ray analysis; 3. palynological data; 4. down-hole temperature data; 5. detailed core descriptions and selected core photographs; 6. coal physical and chemical analytical data; 7. coal gas desorption results; 8. methane and carbon dioxide coal sorption data; 9. coal petrographic results; and 10. geophysical logs.

Benthic foraminiferal census data from Mobile Bay, Alabama--counts of surface samples and box cores

USGS Publications Warehouse

Richwine, Kathryn A.; Osterman, Lisa E.

2012-01-01

A study was undertaken in order to understand recent environmental change in Mobile Bay, Alabama. For this study a series of surface sediment and box core samples was collected. The surface benthic foraminiferal data provide the modern baseline conditions of the bay and can be used as a reference for changing paleoenvironmental parameters recorded in the box cores. The 14 sampling locations were chosen in the bay to cover the wide diversity of fluvial and marine-influenced environments on both sides of the shipping channel.

Collecting Ground Samples for Balloon-Borne Instruments

NASA Technical Reports Server (NTRS)

Jones, Jack; Zimmerman, Wayne; Wu, Jiunn Jenq

2009-01-01

A proposed system in a gondola containing scientific instruments suspended by a balloon over the surface of the Saturn moon Titan would quickly acquire samples of rock or ice from the ground below. Prototypes of a sample-collecting device that would be a major part of the system have been tested under cryogenic and non-cryogenic conditions on Earth. Systems like this one could also be used in non-cryogenic environments on Earth to collect samples of rock, soil, ice, mud, or other ground material from such inaccessible or hazardous locations as sites of suspected chemical spills or biological contamination. The sample-collecting device would be a harpoonlike device that would be connected to the balloon-borne gondola by a tether long enough to reach the ground. The device would be dropped from the gondola to acquire a sample, then would be reeled back up to the gondola, where the sample would be analyzed by the onboard instruments. Each prototype of the sample-collecting device has a sharp front (lower) end, a hollow core for retaining a sample, a spring for holding the sample in the hollow core, and a rear (upper) annular cavity for retaining liquid sample material. Aerodynamic fins at the rear help to keep the front end pointed downward. In tests, these prototype devices were dropped from various heights and used to gather samples of dry sand, moist sand, cryogenic water ice, and warmer water ice.

Identification of water-quality trends using sediment cores from Dillon Reservoir, Summit County, Colorado

USGS Publications Warehouse

Greve, Adrienne I.; Spahr, Norman E.; Van Metre, Peter C.; Wilson, Jennifer T.

2001-01-01

Since the construction of Dillon Reservoir, in Summit County, Colorado, in 1963, its drainage area has been the site of rapid urban development and the continued influence of historical mining. In an effort to assess changes in water quality within the drainage area, sediment cores were collected from Dillon Reservoir in 1997. The sediment cores were analyzed for pesticides, polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), and trace elements. Pesticides, PCBs, and PAHs were used to determine the effects of urban development, and trace elements were used to identify mining contributions. Water-quality and streambed-sediment samples, collected at the mouth of three streams that drain into Dillon Reservoir, were analyzed for trace elements. Of the 14 pesticides and 3 PCBs for which the sediment samples were analyzed, only 2 pesticides were detected. Low amounts of dichloro-diphenyldichloroethylene (DDE) and dichloro-diphenyldichloroethane (DDD), metabolites of dichlorodiphenyltrichloroethane (DDT), were found at core depths of 5 centimeters and below 15 centimeters in a core collected near the dam. The longest core, which was collected near the dam, spanned the entire sedimentation history of the reservoir. Concentrations of total combustion PAH and the ratio of fluoranthene to pyrene in the core sample decreased with core depth and increased over time. This relation is likely due to growth in residential and tourist populations in the region. Comparisons between core samples gathered in each arm of the reservoir showed the highest PAH concentrations were found in the Tenmile Creek arm, the only arm that has an urban area on its shores, the town of Frisco. All PAH concentrations, except the pyrene concentration in one segment in the core near the dam and acenaphthylene concentrations in the tops of three cores taken in the reservoir arms, were below Canadian interim freshwater sediment-quality guidelines. Concentrations of arsenic, cadmium, chromium, copper, lead, and zinc in sediment samples from Dillon Reservoir exceeded the Canadian interim freshwater sediment-quality guidelines. Copper, iron, lithium, nickel, scandium, titanium, and vanadium concentrations in sediment samples decreased over time. Other elements, while no trend was evident, displayed concentration spikes in the down-core profiles, indicating loads entering the reservoir may have been larger than they were in 1997. The highest concentrations of copper, lead, manganese, mercury, and zinc were detected during the late 1970's and early 1980's. Elevated concentrations of trace elements in sediment in Dillon Reservoir likely resulted from historical mining in the drainage area. The downward trend identified for copper, iron, lithium, nickel, scandium, titanium, and vanadium may be due in part to restoration efforts in mining-affected areas and a decrease in active mining in the Dillon Reservoir watershed. Although many trace-element core-sediment concentrations exceeded the Canadian probable effect level for freshwater lakes, under current limnological conditions, the high core-sediment concentrations do not adversely affect water quality in Dillon Reservoir. The trace-element concentrations in the reservoir water column meet the standards established by the Colorado Water Quality Control Commission. Although many trace-element core-sediment concentrations exceeded the Canadian probable effect level for freshwater lakes, under current limnological conditions, the high core-sediment concentrations do not adversely affect water quality in Dillon Reservoir. The trace-element concentrations in the reservoir water column meet the standards established by the Colorado Water Quality Control Commission.

A method for development of a system of identification for Appalachian coal-bearing rocks

USGS Publications Warehouse

Ferm, J.C.; Weisenfluh, G.A.; Smith, G.C.

2002-01-01

The number of observable properties of sedimentary rocks is large and numerous classifications have been proposed for describing them. Some rock classifications, however, may be disadvantageous in situations such as logging rock core during coal exploration programs, where speed and simplicity are the essence. After experimenting with a number of formats for logging rock core in the Appalachian coal fields, a method of using color photographs accompanied by a rock name and numeric code was selected. In order to generate a representative collection of rocks to be photographed, sample methods were devised to produce a representative collection, and empirically based techniques were devised to identify repeatedly recognizable rock types. A number of cores representing the stratigraphic and geographic range of the region were sampled so that every megascopically recognizable variety was included in the collection; the frequency of samples of any variety reflects the frequency with which it would be encountered during logging. In order to generate repeatedly recognizable rock classes, the samples were sorted to display variation in grain size, mineral composition, color, and sedimentary structures. Class boundaries for each property were selected on the basis of existing, widely accepted limits and the precision with which these limits could be recognized. The process of sorting the core samples demonstrated relationships between rock properties and indicated that similar methods, applied to other groups of rocks, could yield more widely applicable field classifications. ?? 2002 Elsevier Science B.V. All rights reserved.

Collection methods and descriptions of coral cores extracted from massive corals in Dry Tortugas National Park, Florida, U.S.A.

USGS Publications Warehouse

Weinzierl, Michael S.; Reich, Christopher D.; Hickey, T. Donald; Bartlett, Lucy A.; Kuffner, Ilsa B.

2016-11-29

Cores from living coral colonies were collected from Dry Tortugas National Park, Florida, U.S.A., to obtain skeletal records of past coral growth and allow geochemical reconstruction of environmental variables during the corals’ centuries-long lifespans. The samples were collected as part of the U.S. Geological Survey Coral Reef Ecosystems Studies project (http:/coastal.er.usgs.gov/crest) that provides science to assist resource managers tasked with the stewardship of coral reef resources. Three colonies each of the coral species Orbicella faveolata and Siderastrea siderea were collected in May 2012 using the methods described herein and as approved under National Park Service scientific collecting permit number DRTO-2012-SCI-0001 and are cataloged under accession number DRTO-353. These coral samples can be used to retroactively construct environmental parameters, including sea-surface temperature, by measuring the elemental composition of the coral skeleton. The cores described here, and others (see http://olga.er.usgs.gov/coreviewer/), can be requested, on loan, for scientific study. Photographic images for each coral in its ocean environment, the coral cores as curated and slabbed, and the X-rays of the slabs can be found in an associated U.S. Geological Survey Data Release.

Sediment data collected in 2013 from the northern Chandeleur Islands, Louisiana

USGS Publications Warehouse

Buster, Noreen A.; Kelso, Kyle W.; Bernier, Julie C.; Flocks, James G.; Miselis, Jennifer L.; DeWitt, Nancy T.

2014-01-01

This data series serves as an archive of sediment data collected in July 2013 from the Chandeleur Islands sand berm and adjacent barrier-island environments. Data products include descriptive core logs, core photographs and x-radiographs, results of sediment grain-size analyses, sample location maps, and Geographic Information System data files with accompanying formal Federal Geographic Data Committee metadata.

Analyses of water, core material, and elutriate samples collected near Buras, Louisiana (New Orleans to Venice, Louisiana, Hurricane Protection Project)

USGS Publications Warehouse

Leone, Harold A.

1977-01-01

Eight core-material-sampling sites were chosen by the U.S. Army Corps of Engineers as possible borrow areas for fill material to be used in levee contruction near Buras, La. Eleven receiving-water sites also were selected to represent the water that will contact the porposed levees. Analyses of selected nutrients, metals, pesticides, and other organic constitutents were performed upon these bed-material and native-water samples as well as upon elutriate samples of specific core material-receiving water systems. The results of these analyses are presented without interpretation. (Woodard-USGS)

Gains in efficiency and scientific potential of continental climate reconstruction provided by the LRC LacCore Facility, University of Minnesota

NASA Astrophysics Data System (ADS)

Noren, A.; Brady, K.; Myrbo, A.; Ito, E.

2007-12-01

Lacustrine sediment cores comprise an integral archive for the determination of continental paleoclimate, for their potentially high temporal resolution and for their ability to resolve spatial variability in climate across vast sections of the globe. Researchers studying these archives now have a large, nationally-funded, public facility dedicated to the support of their efforts. The LRC LacCore Facility, funded by NSF and the University of Minnesota, provides free or low-cost assistance to any portion of research projects, depending on the specific needs of the project. A large collection of field equipment (site survey equipment, coring devices, boats/platforms, water sampling devices) for nearly any lacustrine setting is available for rental, and Livingstone-type corers and drive rods may be purchased. LacCore staff can accompany field expeditions to operate these devices and curate samples, or provide training prior to device rental. The Facility maintains strong connections to experienced shipping agents and customs brokers, which vastly improves transport and importation of samples. In the lab, high-end instrumentation (e.g., multisensor loggers, high-resolution digital linescan cameras) provides a baseline of fundamental analyses before any sample material is consumed. LacCore staff provide support and training in lithological description, including smear-slide, XRD, and SEM analyses. The LRC botanical macrofossil reference collection is a valuable resource for both core description and detailed macrofossil analysis. Dedicated equipment and space for various subsample analyses streamlines these endeavors; subsamples for several analyses may be submitted for preparation or analysis by Facility technicians for a fee (e.g., carbon and sulfur coulometry, grain size, pollen sample preparation and analysis, charcoal, biogenic silica, LOI, freeze drying). The National Lacustrine Core Repository now curates ~9km of sediment cores from expeditions around the world, and stores metadata and analytical data for all cores processed at the facility. Any researcher may submit sample requests for material in archived cores. Supplies for field (e.g., polycarbonate pipe, endcaps), lab (e.g., sample containers, pollen sample spike), and curation (e.g., D-tubes) are sold at cost. In collaboration with facility users, staff continually develop new equipment, supplies, and procedures as needed in order to provide the best and most comprehensive set of services to the research community.

Analysis of Monolith Cores from an Engineering Scale Demonstration of a Prospective Cast Stone Process

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crawford, C. L.; Cozzi, A. D.; Hill, K. A.

2016-06-01

The primary disposition path of Low Activity Waste (LAW) at the DOE Hanford Site is vitrification. A cementitious waste form is one of the alternatives being considered for the supplemental immobilization of the LAW that will not be treated by the primary vitrification facility. Washington River Protection Solutions (WRPS) has been directed to generate and collect data on cementitious or pozzolanic waste forms such as Cast Stone. This report documents the coring and leach testing of monolithic samples cored from an engineering-scale demonstration (ES Demo) with non-radioactive simulants. The ES Demo was performed at SRNL in October of 2013 usingmore » the Scaled Continuous Processing Facility (SCPF) to fill an 8.5 ft. diameter x 3.25 ft. high container with simulated Cast Stone grout. The Cast Stone formulation was chosen from the previous screening tests. Legacy salt solution from previous Hanford salt waste testing was adjusted to correspond to the average LAW composition generated from the Hanford Tank Waste Operation Simulator (HTWOS). The dry blend materials, ordinary portland cement (OPC), Class F fly ash, and ground granulated blast furnace slag (GGBFS or BFS), were obtained from Lafarge North America in Pasco, WA. In 2014 core samples originally obtained approximately six months after filling the ES Demo were tested along with bench scale molded samples that were collected during the original pour. A latter set of core samples were obtained in late March of 2015, eighteen months after completion of the original ES Demo. Core samples were obtained using a 2” diameter x 11” long coring bit. The ES Demo was sampled in three different regions consisting of an outer ring, a middle ring and an inner core zone. Cores from these three lateral zones were further segregated into upper, middle and lower vertical segments. Monolithic core samples were tested using the Environmental Protection Agency (EPA) Method 1315, which is designed to provide mass transfer rates (release rates) of inorganic analytes contained in monolithic material under diffusion controlled release conditions as a function of leaching time. Compressive strength measurements and drying tests were also performed on the 2015 samples. Leachability indices reported are based on analyte concentrations determined from dissolution of the dried samples.« less

A sampler for coring sediments in rivers and estuaries

USGS Publications Warehouse

Prych, Edmund A.; Hubbell, D.W.

1966-01-01

A portable sampler developed to core submerged unconsolidated sediments collects cores that are 180 cm long and 4.75cm in diameter. The sampler is used from a 12-m boat in water depths up to 20 m and in flow velocities up to 1.5m per second to sample river and estuarine deposits ranging from silty clay to medium sand. Even in sand that cannot be penetrated with conventional corers, the sampler achieves easy penetration through the combined application of vibration, suction, and axial force. A piston in the core barrel creates suction, and the suspension system is arranged so that tension on the support cable produces both a downward force on the core barrel and a lateral support against overturning. Samples are usually retained because of slight compaction in the driving head; as a precaution, however, the bottom of the core barrel is covered by a plate that closes after the barrel is withdrawn from the bed. Tests show that sample-retainers placed within the driving head restrict penetration and limit core lengths. Stratification within cores is disrupted little as a result of the sampling process.

The U.S. Geological Survey Geologic Collections Management System (GCMS)—A master catalog and collections management plan for U.S. Geological Survey geologic samples and sample collections

USGS Publications Warehouse

,

2015-01-01

The general consideration for implementation of the GCMS is that all active USGS geologic sample repositories will form the core of GCMS and that participating science centers will develop procedures based on proposed GCMS methodologies. The GCMS is a collective resource for the entire USGS community and the users who discover the geologic materials kept in these repositories and seek to access them.

Freeze shoe sampler for the collection of hyporheic zone sediments and porewater.

PubMed

Bianchin, M; Smith, L; Beckie, R

2015-01-01

The Starr and Ingleton (1992) drive point piston sampler (DPPS) design was modified by fitting it with a Murphy and Herkelrath (1996) type sample-freezing drive shoe (SFDS), which uses liquid carbon dioxide as a cryogen. Liquid carbon dioxide was used to freeze sediments in the lower 0.1 m of the core and the drive-point piston sealed the core at the top preserving the reductive-oxidation (redox) sensitive sediments from the atmosphere and maintaining natural stratigraphy. The use of nitrogen gas to provide positive pressure on the gas system blocked the ingress of water which froze on contact with the cryogen thus blocking the gas lines with ice. With this adaptation to the gas system cores could be collected at greater depths beneath the static water level. This tool was used to collect intact saturated sediment cores from the hyporheic zone of the tidally influenced Fraser River in Vancouver, British Columbia, Canada where steep geochemical and microbial gradients develop within the interface between discharging anaerobic groundwater and recharging aerobic river water. In total, 25 cores driven through a 1.5 m sampling interval were collected from the river bed with a mean core recovery of 75%. The ability to deploy this method from a fishing vessel makes the tool more cost effective than traditional marine-based drilling operations which often use barges, tug boats, and drilling rigs. © 2014, National Ground Water Association.

Opportunities and Challenges of Linking Scientific Core Samples to the Geoscience Data Ecosystem

NASA Astrophysics Data System (ADS)

Noren, A. J.

2016-12-01

Core samples generated in scientific drilling and coring are critical for the advancement of the Earth Sciences. The scientific themes enabled by analysis of these samples are diverse, and include plate tectonics, ocean circulation, Earth-life system interactions (paleoclimate, paleobiology, paleoanthropology), Critical Zone processes, geothermal systems, deep biosphere, and many others, and substantial resources are invested in their collection and analysis. Linking core samples to researchers, datasets, publications, and funding agencies through registration of globally unique identifiers such as International Geo Sample Numbers (IGSNs) offers great potential for advancing several frontiers. These include maximizing sample discoverability, access, reuse, and return on investment; a means for credit to researchers; and documentation of project outputs to funding agencies. Thousands of kilometers of core samples and billions of derivative subsamples have been generated through thousands of investigators' projects, yet the vast majority of these samples are curated at only a small number of facilities. These numbers, combined with the substantial similarity in sample types, make core samples a compelling target for IGSN implementation. However, differences between core sample communities and other geoscience disciplines continue to create barriers to implementation. Core samples involve parent-child relationships spanning 8 or more generations, an exponential increase in sample numbers between levels in the hierarchy, concepts related to depth/position in the sample, requirements for associating data derived from core scanning and lithologic description with data derived from subsample analysis, and publications based on tens of thousands of co-registered scan data points and thousands of analyses of subsamples. These characteristics require specialized resources for accurate and consistent assignment of IGSNs, and a community of practice to establish norms, workflows, and infrastructure to support implementation.

Tritium, deuterium, and oxygen-18 in water collected from unsaturated sediments near a low-level radioactive-waste burial site south of Beatty, Nevada

USGS Publications Warehouse

Prudic, David E.; Stonestrom, David A.; Striegl, Robert G.

1997-01-01

Pore water was extracted in March 1996 from cores collected from test holes UZB-1 and UZB-2 drilled November 1992 and September 1993, respectively, in the Amargosa Desert south of Beatty, Nevada. The test holes are part of a study to determine factors affecting water and gas movement through unsaturated sediments. The holes are about 100 meters south of the southwest corner of the fence enclosing a commercial burial area for low-level radioactive waste. Water vapor collected from test hole UZB-2 in April 1994 and July 1995 had tritium concentrations greater than would be expected from atmospheric deposition. An apparatus was built in which pore water was extracted by cryodistillation from the previously obtained core samples. The extracted core water was analyzed for the radioactive isotope tritium and for the stable isotopes deuterium (D) and oxygen-18 (18O). The isotopic composition of core water was compared with that of water vapor previously collected from air ports in test hole UZB-2 and to additional samples collected during May 1996. Core water becomes increasingly depleted in D and 18O from the land surface to a depth of 30 meters, indicating that net evaporation of water is occurring near the land surface. Below a depth of 30 meters the stable-isotopic composition of core water becomes nearly constant and roughly equal to that of ground water. The stable isotopes plot on an evaporation trend. The source of the partly evaporated water could be either ground water or past precipitation having the same average isotopic composition as ground water but not modern precipitation, based on 18 months of record. Profiles of D and 18O in water vapor roughly parallel those in core water. The stable isotopes of core water appear to be in isotopic equilibrium with water vapor from UZB-2 when temperature-dependent fractionation is considered. The data are consistent with the hypothesis of evaporative discharge of ground water at the land surface. The concentration of tritium in core water from depths less than 50 meters was higher than that of present-day atmospheric air, indicating that elevated tritium concentrations preceded the drilling. The concentrations of tritium in core water from the deepest sample (85 meters) and in UZB-2 groundwater (110 meters) were below detection. Thus, tritium in the unsaturated zone is not being introduced through ground water. The shape of the tritium profile for core water was similar to the shape of the tritium profile for water vapor collected April 1994, except that concentrations were consistently lower in core water than in water vapor. Tritium concentrations in water vapor increased from April 1994 to May 1996. Similar to the stable isotopes, the highest tritium concentrations were measured at shallow depths. Concentrations of tritium in water vapor during core collection were estimated assuming isotopic equilibrium with core water. The computed concentrations for November 1992 and September 1993 form consistent temporal trends with subsequent tritium concentrations in water vapor collected April 1994, July 1995, and May 1996. Observations of a bimodal distribution of tritium, in which the highest concentrations are in a gravel layer at a depth of 1-2 meters, indicate lateral migration of tritium through the vicinity of UZB-2.

Core Research Center

USGS Publications Warehouse

Hicks, Joshua; Adrian, Betty

2009-01-01

The Core Research Center (CRC) of the U.S. Geological Survey (USGS), located at the Denver Federal Center in Lakewood, Colo., currently houses rock core from more than 8,500 boreholes representing about 1.7 million feet of rock core from 35 States and cuttings from 54,000 boreholes representing 238 million feet of drilling in 28 States. Although most of the boreholes are located in the Rocky Mountain region, the geologic and geographic diversity of samples have helped the CRC become one of the largest and most heavily used public core repositories in the United States. Many of the boreholes represented in the collection were drilled for energy and mineral exploration, and many of the cores and cuttings were donated to the CRC by private companies in these industries. Some cores and cuttings were collected by the USGS along with other government agencies. Approximately one-half of the cores are slabbed and photographed. More than 18,000 thin sections and a large volume of analytical data from the cores and cuttings are also accessible. A growing collection of digital images of the cores are also becoming available on the CRC Web site Internet http://geology.cr.usgs.gov/crc/.

Construction of nested genetic core collections to optimize the exploitation of natural diversity in Vitis vinifera L. subsp. sativa

PubMed Central

Le Cunff, Loïc; Fournier-Level, Alexandre; Laucou, Valérie; Vezzulli, Silvia; Lacombe, Thierry; Adam-Blondon, Anne-Françoise; Boursiquot, Jean-Michel; This, Patrice

2008-01-01

Background The first high quality draft of the grape genome sequence has just been published. This is a critical step in accessing all the genes of this species and increases the chances of exploiting the natural genetic diversity through association genetics. However, our basic knowledge of the extent of allelic variation within the species is still not sufficient. Towards this goal, we constructed nested genetic core collections (G-cores) to capture the simple sequence repeat (SSR) diversity of the grape cultivated compartment (Vitis vinifera L. subsp. sativa) from the world's largest germplasm collection (Domaine de Vassal, INRA Hérault, France), containing 2262 unique genotypes. Results Sub-samples of 12, 24, 48 and 92 varieties of V. vinifera L. were selected based on their genotypes for 20 SSR markers using the M-strategy. They represent respectively 58%, 73%, 83% and 100% of total SSR diversity. The capture of allelic diversity was analyzed by sequencing three genes scattered throughout the genome on 233 individuals: 41 single nucleotide polymorphisms (SNPs) were identified using the G-92 core (one SNP for every 49 nucleotides) while only 25 were observed using a larger sample of 141 individuals selected on the basis of 50 morphological traits, thus demonstrating the reliability of the approach. Conclusion The G-12 and G-24 core-collections displayed respectively 78% and 88% of the SNPs respectively, and are therefore of great interest for SNP discovery studies. Furthermore, the nested genetic core collections satisfactorily reflected the geographic and the genetic diversity of grape, which are also of great interest for the study of gene evolution in this species. PMID:18384667

The use of mini-samples in palaeomagnetism

NASA Astrophysics Data System (ADS)

Böhnel, Harald; Michalk, Daniel; Nowaczyk, Norbert; Naranjo, Gildardo Gonzalez

2009-10-01

Rock cores of ~25 mm diameter are widely used in palaeomagnetism. Occasionally smaller diameters have been used as well which represents distinct advantages in terms of throughput, weight of equipment and core collections. How their orientation precision compares to 25 mm cores, however, has not been evaluated in detail before. Here we compare the site mean directions and their statistical parameters for 12 lava flows sampled with 25 mm cores (standard samples, typically 8 cores per site) and with 12 mm drill cores (mini-samples, typically 14 cores per site). The site-mean directions for both sample sizes appear to be indistinguishable in most cases. For the mini-samples, site dispersion parameters k on average are slightly lower than for the standard samples reflecting their larger orienting and measurement errors. Applying the Wilcoxon signed-rank test the probability that k or α95 have the same distribution for both sizes is acceptable only at the 17.4 or 66.3 per cent level, respectively. The larger mini-core numbers per site appears to outweigh the lower k values yielding also slightly smaller confidence limits α95. Further, both k and α95 are less variable for mini-samples than for standard size samples. This is interpreted also to result from the larger number of mini-samples per site, which better averages out the detrimental effect of undetected abnormal remanence directions. Sampling of volcanic rocks with mini-samples therefore does not present a disadvantage in terms of the overall obtainable uncertainty of site mean directions. Apart from this, mini-samples do present clear advantages during the field work, as about twice the number of drill cores can be recovered compared to 25 mm cores, and the sampled rock unit is then more widely covered, which reduces the contribution of natural random errors produced, for example, by fractures, cooling joints, and palaeofield inhomogeneities. Mini-samples may be processed faster in the laboratory, which is of particular advantage when carrying out palaeointensity experiments.

Heavy metal concentrations and the variations of foraminifers in the Silivri-Kumbagi area (NW Marmara Sea, Turkey)

NASA Astrophysics Data System (ADS)

Ünal Yümün, Zeki; Murat Kılıç, Ali; Önce, Melike

2016-04-01

In the area between Silivri (İstanbul) and Kumbagi (Tekirdag), NW of Marmara Sea, there is a considerable extent in marine pollution from industrial and settlements wastes, sea transports, and agricultural activities. The most important one of these pollutions is the spread of heavy metals. Our research investigated sediments in order to determine whether heavy minerals affected biota such as recent foraminifers, or not. Our investigation area starts from Marmara Ereglisi, in the east, continues to Tekirdag and Kumbagi, in the west. 10 sea-water samples, 10 sediment-core samples and one 10 m core-drilling sample, taken 250 m off-shore from coast line. As a result of this sampling geochemical analysis of the bottom-mud and water samples were done and the ratio of heavy metals and other contaminants determined. For heavy metal analyses, concentration analysis of 12 heavy metals (Cd, Fe, Cu, Pb, Zn, Al, Co, Cr, Mn, Ni, As, and Hg) has been conducted, as ppm, in sediment samples taken from the levels in which foraminifers are collected. Perpendicular (spatial) heavy metal concentration changes have been determined with off-shore drilling samples and horizontal changes (geochronological) have been determined with the help of core samples. Especially, it has been understood that heavy metal concentrations in recent sediments are higher compared to the past. In this research the samples have been taken from each 10 cm. of core and drilling samples to collect the benthic foraminifers. In this context, 15 grams of dry sediment sample taken from each level, have been washed in 125 μm sieves in order to determine its benthic foraminifer content. Benthic foraminifera from these samples have been identified taxonomically and their morphological differentiation has been determined after taking SEM photos. As a result of this study, the foraminifera types of "Adelosinacliarensis, Adelosinamediteranensis, Adelosinapulchella, Ammonia compacta, Ammonia parkinsonia, Ammonia tepida, Cribroelphidiumpoeyonum, Cycloforinacontorta, Elphidiumaculeatum, Elphidiumcomplanatum, Elphidiumcrispum, Elphidiumgalvestonense, Lobatulalobatula, Massilinasecans, Miliolinellasubrotunda, Pseudotriloculinaoblanga, Quinqueloculina seminula, Quinqueloculina polygona, Spiroloculinaangulosa, Spiroloculinaexcavata, Triloculina marioni" have been determined. Especially in the Elphidiumcrispumand Ammonia compacta, collected from the core samples taken from Marmara Ereglisi (Tekirdag) and Silivri (Istanbul) offshore, some morphological variations, colour changes, abnormality and multiple-individuals, were observed. Increasing of the heavy metal concentration in the levels of these morphological variations is noticeable.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jo, J.

This document is a report of the analytical results for samples collected from the radioactive wastes in Tank 241-U-202 at the Hanford Reservation. Core samples were collected from the solid wastes in the tank and underwent safety screening analyses including differential scanning calorimetry, thermogravimetric analysis, and total alpha analysis. Results indicate that no safety screening notification limits were exceeded.

Characterization of Vadose Zone Sediment: RCRA Borehole 299-E33-338 Located Near the B-BX-BY Waste Management Area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lindenmeier, Clark W.; Serne, R. Jeffrey; Bjornstad, Bruce N.

2003-09-11

This report summarizes data collected from samples in borehole 299-E33-338 (C3391). Borehole 299-E33-338 was drilled for two purposes. One purpose was for installation of a RCRA ground-water monitoring well and the other was to characterize the in situ soils and background porewater chemistry near WMA B-BX-BY that have been largely uncontaminated by tank farm and crib and trench discharge operations. This borehole was drilled just outside the southeast fence line of the B tank farm. The borehole was drilled between July 23 and August 8, 2001 to a total depth of 80.05 m (275.75 ft) bgs using the cable-tool methodmore » (Horton 2002). The water table was contacted at 77.5 m (254.2 ft) bgs and the top of basalt at 82.6 m (271 ft) bgs. Samples to the top of basalt were collected via a drive barrel/splitspoon, before switching to a hard tool to drill 5 feet into the basalt. Nearly continuous core was obtained down to a depth of ~78.6 m (258 ft) bgs. Two hundred and two 2-ft long by 4-in diameter cores were retrieved, which accounts for ~75% the total length of the borehole. Each 2-ft splitspoon contained two 1-ft lexan-lined core segments. The lithology of this borehole was summarized onto a field geologist's log by a CH2M HILL Hanford Group, Inc. geologist (L. D. Walker); subsequently visual inspection of the cores was performed in the laboratory by K. A. Lindsey (Kennedy/Jenks), K. D. Reynolds (Duratek), and B. N. Bjornstad (Pacific Northwest National Laboratory), who also collected 24 samples for paleomagnetic analysis. Subsamples were taken from all 102 cores for moisture content (Table B.1). In addition, 21 core subsamples were collected from a depth of geological interest for mineralogical and geochemical analysis. Data from these samples allow for comparison of uncontaminated versus contaminated soils to better understand the contributions of tank wastes and other wastewaters on the vadose zone in and around WMA B-BX-BY.« less

Inexpensive, easy-to-construct suction coring devices usable from small boats

USGS Publications Warehouse

Onuf, Christopher P.; Chapman, Duane C.; Rizzo, William M.

1996-01-01

Collection of sediment cores in depths of 1-5 m is difficult with traditional sampling gear. Here we describe three suction coring devices constructed with readily available plumbing supplies and parts easily made from acrylic plastic and silicone sealant. The samplers have been used successfully in sediments ranging from coarse sands and shell hash to muds, highly organic deposits, and dense clays. Successful applications have ranged from contaminants analysis, toxicity testing, seagrass mapping, and assessment of sediment-microfloral interactions to sampling the infauna of surf-swept beaches.

Uncertainty assessment method for the Cs-137 fallout inventory and penetration depth.

PubMed

Papadakos, G N; Karangelos, D J; Petropoulos, N P; Anagnostakis, M J; Hinis, E P; Simopoulos, S E

2017-05-01

Within the presented study, soil samples were collected in year 2007 at 20 different locations of the Greek terrain, both from the surface and also from depths down to 26 cm. Sampling locations were selected primarily from areas where high levels of 137 Cs deposition after the Chernobyl accident had already been identified by the Nuclear Engineering Laboratory of the National Technical University of Athens during and after the year of 1986. At one location of relatively higher deposition, soil core samples were collected following a 60 m by 60 m Cartesian grid with a 20 m node-to-node distance. Single or pair core samples were also collected from the remaining 19 locations. Sample measurements and analysis were used to estimate 137 Cs inventory and the corresponding depth migration, twenty years after the deposition on Greek terrain. Based on these data, the uncertainty components of the whole sampling-to-results procedure were investigated. A cause-and-effect assessment process was used to apply the law of error propagation and demonstrate that the dominating significant component of the combined uncertainty is that due to the spatial variability of the contemporary (2007) 137 Cs inventory. A secondary, yet also significant component was identified to be the activity measurement process itself. Other less-significant uncertainty parameters were sampling methods, the variation in the soil field density with depth and the preparation of samples for measurement. The sampling grid experiment allowed for the quantitative evaluation of the uncertainty due to spatial variability, also by the assistance of the semivariance analysis. Denser, optimized grid could return more accurate values for this component but with a significantly elevated laboratory cost, in terms of both, human and material resources. Using the hereby collected data and for the case of a single core soil sampling using a well-defined sampling methodology quality assurance, the uncertainty component due to spatial variability was evaluated to about 19% for the 137 Cs inventory and up to 34% for the 137 Cs penetration depth. Based on the presented results and also on related literature, it is argued that such high uncertainties should be anticipated for single core samplings conducted using similar methodology and employed as 137 Cs inventory and penetration depth estimators. Copyright © 2017 Elsevier Ltd. All rights reserved.

DISTRIBUTION COEFICIENTS (KD) GENERATED FROM A CORE SAMPLE COLLECTED FROM THE SALTSTONE DISPOSAL FACILITY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Almond, P.; Kaplan, D.

Core samples originating from Vault 4, Cell E of the Saltstone Disposal Facility (SDF) were collected in September of 2008 (Hansen and Crawford 2009, Smith 2008) and sent to SRNL to measure chemical and physical properties of the material including visual uniformity, mineralogy, microstructure, density, porosity, distribution coefficients (K{sub d}), and chemical composition. Some data from these experiments have been reported (Cozzi and Duncan 2010). In this study, leaching experiments were conducted with a single core sample under conditions that are representative of saltstone performance. In separate experiments, reducing and oxidizing environments were targeted to obtain solubility and Kd valuesmore » from the measurable species identified in the solid and aqueous leachate. This study was designed to provide insight into how readily species immobilized in saltstone will leach from the saltstone under oxidizing conditions simulating the edge of a saltstone monolith and under reducing conditions, targeting conditions within the saltstone monolith. Core samples were taken from saltstone poured in December of 2007 giving a cure time of nine months in the cell and a total of thirty months before leaching experiments began in June 2010. The saltstone from Vault 4, Cell E is comprised of blast furnace slag, class F fly ash, portland cement, and Deliquification, Dissolution, and Adjustment (DDA) Batch 2 salt solution. The salt solution was previously analyzed from a sample of Tank 50 salt solution and characterized in the 4QCY07 Waste Acceptance Criteria (WAC) report (Zeigler and Bibler 2009). Subsequent to Tank 50 analysis, additional solution was added to the tank solution from the Effluent Treatment Project as well as from inleakage from Tank 50 pump bearings (Cozzi and Duncan 2010). Core samples were taken from three locations and at three depths at each location using a two-inch diameter concrete coring bit (1-1, 1-2, 1-3; 2-1, 2-2, 2-3; 3-1, 3-2, 3-3) (Hansen and Crawford 2009). Leaching experiments were conducted with a section of core sample 3-2. All cores from location 3 were drilled without using water. Core sample 3-2 was drilled from approximately six inches to a depth of approximately 13 inches. Approximately six inches of the core was removed but it broke into two pieces during removal from the bit. At the time of drilling, core material appeared olive green in color (Smith 2008). The fact that the samples were cored as olive green and were received after storage with a gray outer layer is indicative that some oxidation had occurred prior to leaching studies.« less

CT Scans of Cores Metadata, Barrow, Alaska 2015

DOE Data Explorer

Katie McKnight; Tim Kneafsey; Craig Ulrich

2015-03-11

Individual ice cores were collected from Barrow Environmental Observatory in Barrow, Alaska, throughout 2013 and 2014. Cores were drilled along different transects to sample polygonal features (i.e. the trough, center and rim of high, transitional and low center polygons). Most cores were drilled around 1 meter in depth and a few deep cores were drilled around 3 meters in depth. Three-dimensional images of the frozen cores were constructed using a medical X-ray computed tomography (CT) scanner. TIFF files can be uploaded to ImageJ (an open-source imaging software) to examine soil structure and densities within each core.

A sample-freezing drive shoe for a wire line piston core sampler

USGS Publications Warehouse

Murphy, F.; Herkelrath, W.N.

1996-01-01

Loss of fluids and samples during retrieval of cores of saturated, noncohesive sediments results in incorrect measures of fluid distributions and an inaccurate measure of the stratigraphic position of the sample. To reduce these errors, we developed a hollow drive shoe that freezes in place the lowest 3 inches (75 mm) of a 1.88-inch-diameter (48 mm), 5-foot-long (1.5 m) sediment sample taken using a commercial wire line piston core sampler. The end of the core is frozen by piping liquid carbon dioxide at ambient temperature through a steel tube from a bottle at the land surface to the drive shoe where it evaporates and expands, cooling the interior surface of the shoe to about -109??F (-78??C). Freezing a core end takes about 10 minutes. The device was used to collect samples for a study of oil-water-air distributions, and for studies of water chemistry and microbial activity in unconsolidated sediments at the site of an oil spill near Bemidji, Minnesota. Before freezing was employed, samples of sandy sediments from near the water table sometimes flowed out of the core barrel as the sampler was withdrawn. Freezing the bottom of the core allowed for the retention of all material that entered the core barrel and lessened the redistribution of fluids within the core. The device is useful in the unsaturated and shallow saturated zones, but does not freeze cores well at depths greater than about 20 feet (6 m) below water, possibly because the feed tube plugs with dry ice with increased exhaust back-pressure, or because sediment enters the annulus between the core barrel and the core barrel liner and blocks the exhaust.

Performance testing of a semi-automatic card punch system, using direct STR profiling of DNA from blood samples on FTA™ cards.

PubMed

Ogden, Samantha J; Horton, Jeffrey K; Stubbs, Simon L; Tatnell, Peter J

2015-01-01

The 1.2 mm Electric Coring Tool (e-Core™) was developed to increase the throughput of FTA(™) sample collection cards used during forensic workflows and is similar to a 1.2 mm Harris manual micro-punch for sampling dried blood spots. Direct short tandem repeat (STR) DNA profiling was used to compare samples taken by the e-Core tool with those taken by the manual micro-punch. The performance of the e-Core device was evaluated using a commercially available PowerPlex™ 18D STR System. In addition, an analysis was performed that investigated the potential carryover of DNA via the e-Core punch from one FTA disc to another. This contamination study was carried out using Applied Biosystems AmpflSTR™ Identifiler™ Direct PCR Amplification kits. The e-Core instrument does not contaminate FTA discs when a cleaning punch is used following excision of discs containing samples and generates STR profiles that are comparable to those generated by the manual micro-punch. © 2014 American Academy of Forensic Sciences.

Sediment Core Extrusion Method at Millimeter Resolution Using a Calibrated, Threaded-rod.

PubMed

Schwing, Patrick T; Romero, Isabel C; Larson, Rebekka A; O'Malley, Bryan J; Fridrik, Erika E; Goddard, Ethan A; Brooks, Gregg R; Hastings, David W; Rosenheim, Brad E; Hollander, David J; Grant, Guy; Mulhollan, Jim

2016-08-17

Aquatic sediment core subsampling is commonly performed at cm or half-cm resolution. Depending on the sedimentation rate and depositional environment, this resolution provides records at the annual to decadal scale, at best. An extrusion method, using a calibrated, threaded-rod is presented here, which allows for millimeter-scale subsampling of aquatic sediment cores of varying diameters. Millimeter scale subsampling allows for sub-annual to monthly analysis of the sedimentary record, an order of magnitude higher than typical sampling schemes. The extruder consists of a 2 m aluminum frame and base, two core tube clamps, a threaded-rod, and a 1 m piston. The sediment core is placed above the piston and clamped to the frame. An acrylic sampling collar is affixed to the upper 5 cm of the core tube and provides a platform from which to extract sub-samples. The piston is rotated around the threaded-rod at calibrated intervals and gently pushes the sediment out the top of the core tube. The sediment is then isolated into the sampling collar and placed into an appropriate sampling vessel (e.g., jar or bag). This method also preserves the unconsolidated samples (i.e., high pore water content) at the surface, providing a consistent sampling volume. This mm scale extrusion method was applied to cores collected in the northern Gulf of Mexico following the Deepwater Horizon submarine oil release. Evidence suggests that it is necessary to sample at the mm scale to fully characterize events that occur on the monthly time-scale for continental slope sediments.

Sediment Core Extrusion Method at Millimeter Resolution Using a Calibrated, Threaded-rod

PubMed Central

Schwing, Patrick T.; Romero, Isabel C.; Larson, Rebekka A.; O'Malley, Bryan J.; Fridrik, Erika E.; Goddard, Ethan A.; Brooks, Gregg R.; Hastings, David W.; Rosenheim, Brad E.; Hollander, David J.; Grant, Guy; Mulhollan, Jim

2016-01-01

Aquatic sediment core subsampling is commonly performed at cm or half-cm resolution. Depending on the sedimentation rate and depositional environment, this resolution provides records at the annual to decadal scale, at best. An extrusion method, using a calibrated, threaded-rod is presented here, which allows for millimeter-scale subsampling of aquatic sediment cores of varying diameters. Millimeter scale subsampling allows for sub-annual to monthly analysis of the sedimentary record, an order of magnitude higher than typical sampling schemes. The extruder consists of a 2 m aluminum frame and base, two core tube clamps, a threaded-rod, and a 1 m piston. The sediment core is placed above the piston and clamped to the frame. An acrylic sampling collar is affixed to the upper 5 cm of the core tube and provides a platform from which to extract sub-samples. The piston is rotated around the threaded-rod at calibrated intervals and gently pushes the sediment out the top of the core tube. The sediment is then isolated into the sampling collar and placed into an appropriate sampling vessel (e.g., jar or bag). This method also preserves the unconsolidated samples (i.e., high pore water content) at the surface, providing a consistent sampling volume. This mm scale extrusion method was applied to cores collected in the northern Gulf of Mexico following the Deepwater Horizon submarine oil release. Evidence suggests that it is necessary to sample at the mm scale to fully characterize events that occur on the monthly time-scale for continental slope sediments. PMID:27585268

The USDA barley core collection: genetic diversity, population structure, and potential for genome-wide association studies.

PubMed

Muñoz-Amatriaín, María; Cuesta-Marcos, Alfonso; Endelman, Jeffrey B; Comadran, Jordi; Bonman, John M; Bockelman, Harold E; Chao, Shiaoman; Russell, Joanne; Waugh, Robbie; Hayes, Patrick M; Muehlbauer, Gary J

2014-01-01

New sources of genetic diversity must be incorporated into plant breeding programs if they are to continue increasing grain yield and quality, and tolerance to abiotic and biotic stresses. Germplasm collections provide a source of genetic and phenotypic diversity, but characterization of these resources is required to increase their utility for breeding programs. We used a barley SNP iSelect platform with 7,842 SNPs to genotype 2,417 barley accessions sampled from the USDA National Small Grains Collection of 33,176 accessions. Most of the accessions in this core collection are categorized as landraces or cultivars/breeding lines and were obtained from more than 100 countries. Both STRUCTURE and principal component analysis identified five major subpopulations within the core collection, mainly differentiated by geographical origin and spike row number (an inflorescence architecture trait). Different patterns of linkage disequilibrium (LD) were found across the barley genome and many regions of high LD contained traits involved in domestication and breeding selection. The genotype data were used to define 'mini-core' sets of accessions capturing the majority of the allelic diversity present in the core collection. These 'mini-core' sets can be used for evaluating traits that are difficult or expensive to score. Genome-wide association studies (GWAS) of 'hull cover', 'spike row number', and 'heading date' demonstrate the utility of the core collection for locating genetic factors determining important phenotypes. The GWAS results were referenced to a new barley consensus map containing 5,665 SNPs. Our results demonstrate that GWAS and high-density SNP genotyping are effective tools for plant breeders interested in accessing genetic diversity in large germplasm collections.

MERCURY IN AND FLUXES TO LAKE MICHIGAN SURFICIAL SEDIMENTS

EPA Science Inventory

Sediment samples were collected from Lake Michigan between 1994 and 1996. One purpose of the coring was to define the horizontal distribution of mercury in the surficial 1 cm of sediment. When possible the sediments were box cored. Subcores for mercury analysis were sectioned at ...

CTEPP NC DATA SUPPLEMENTAL INFORMATION ON FIELD AND LABORATORY SAMPLES

EPA Science Inventory

This data set contains supplemental data related to the final core analytical results table. This includes sample collection data for example sample weight, air volume, creatinine, specific gravity etc.

The Children’s Total Exposure to Persistent Pesticides and Other Persistent...

Completion summary for borehole USGS 136 near the Advanced Test Reactor Complex, Idaho National Laboratory, Idaho

USGS Publications Warehouse

Twining, Brian V.; Bartholomay, Roy C.; Hodges, Mary K.V.

2012-01-01

In 2011, the U.S. Geological Survey, in cooperation with the U.S. Department of Energy, cored and completed borehole USGS 136 for stratigraphic framework analyses and long-term groundwater monitoring of the eastern Snake River Plain aquifer at the Idaho National Laboratory. The borehole was initially cored to a depth of 1,048 feet (ft) below land surface (BLS) to collect core, open-borehole water samples, and geophysical data. After these data were collected, borehole USGS 136 was cemented and backfilled between 560 and 1,048 ft BLS. The final construction of borehole USGS 136 required that the borehole be reamed to allow for installation of 6-inch (in.) diameter carbon-steel casing and 5-in. diameter stainless-steel screen; the screened monitoring interval was completed between 500 and 551 ft BLS. A dedicated pump and water-level access line were placed to allow for aquifer testing, for collecting periodic water samples, and for measuring water levels.Geophysical and borehole video logs were collected after coring and after the completion of the monitor well. Geophysical logs were examined in conjunction with the borehole core to describe borehole lithology and to identify primary flow paths for groundwater, which occur in intervals of fractured and vesicular basalt.A single-well aquifer test was used to define hydraulic characteristics for borehole USGS 136 in the eastern Snake River Plain aquifer. Specific-capacity, transmissivity, and hydraulic conductivity from the aquifer test were at least 975 gallons per minute per foot, 1.4 × 105 feet squared per day (ft2/d), and 254 feet per day, respectively. The amount of measureable drawdown during the aquifer test was about 0.02 ft. The transmissivity for borehole USGS 136 was in the range of values determined from previous aquifer tests conducted in other wells near the Advanced Test Reactor Complex: 9.5 × 103 to 1.9 × 105 ft2/d.Water samples were analyzed for cations, anions, metals, nutrients, total organic carbon, volatile organic compounds, stable isotopes, and radionuclides. Water samples from borehole USGS 136 indicated that concentrations of tritium, sulfate, and chromium were affected by wastewater disposal practices at the Advanced Test Reactor Complex. Depth-discrete groundwater samples were collected in the open borehole USGS 136 near 965, 710, and 573 ft BLS using a thief sampler; on the basis of selected constituents, deeper groundwater samples showed no influence from wastewater disposal at the Advanced Test Reactor Complex.

Reconstructed plutonium fallout in the GV7 firn core from Northern Victoria Land, East Antarctica

NASA Astrophysics Data System (ADS)

Hwang, H.; Han, Y.; Kang, J.; Lee, K.; Hong, S.; Hur, S. D.; Narcisi, B.; Frezzotti, M.

2017-12-01

Atmospheric nuclear explosions during the period from the 1940s to the 1980s are the major anthropogenic source of plutonium (Pu) in the environment. In this work, we analyzed fg g-1 levels of artificial Pu, released predominantly by atmospheric nuclear weapons tests. We measured 351 samples which collected a 78 m-depth fire core at the site of GV7 (S 70°41'17.1", E 158°51'48.9", 1950 m a.s.l.), Northern Victoria Land, East Antarctica. To determine the Pu concentration in the samples, we used an inductively coupled plasma sector field mass spectrometry coupled with an Apex high-efficiency sample introduction system, which has the advantages of small sample consumption and simple sample preparation. We reconstructed the firn core Pu fallout record for the period after 1954 CE shows a significant fluctuation in agreement with past atmospheric nuclear testing. These data will contribute to ice core research by providing depth-age information.

Core data from offshore Puerto Rico and the U.S. Virgin Islands

USGS Publications Warehouse

Hoy, Shannon K.; Chaytor, Jason D.; ten Brink, Uri S.

2014-01-01

In 2008, as a collaborative effort between Woods Hole Oceanographic Institution and the U.S. Geological Survey, 20 giant gravity cores were collected from areas surrounding Puerto Rico and the U.S. Virgin Islands. The regions sampled have had many large earthquake and landslide events, some of which are believed to have triggered tsunamis. The objective of this coring cruise, carried out aboard the National Oceanic and Atmospheric Administration research vessel Seward Johnson, was to determine the age of several substantial slope failures and seismite layers near Puerto Rico in an effort to map their temporal distribution. Data gathered from the cores collected in 2008 and 11 archive cores from the Lamont-Doherty Earth Observatory are included in this report. These data include lithologic logs, core summary sheets, x-ray fluorescence, wet-bulk density, magnetic susceptibility, grain-size analyses, radiographs, and radiocarbon age dates.

CTEPP-OH DATA SUPPLEMENTAL INFORMATION ON FIELD AND LABORATORY SAMPLES

EPA Science Inventory

This data set contains supplemental data related to the final core analytical results table for CTEPP-OH. This includes sample collection data for example sample weight, air volume, creatinine, specific gravity etc.

The Children’s Total Exposure to Persistent Pesticides and Oth...

Hurricane Sandy washover deposits on southern Long Beach Island, New Jersey

USGS Publications Warehouse

Bishop, James M.; Richmond, Bruce M.; Zaremba, Nicholas J.; Lunghino, Brent D.; Kane, Haunani H.

2016-07-22

Sedimentologic and topographic data from Hurricane Sandy washover deposits were collected from southern Long Beach Island, New Jersey, in order to document changes to the barrier-island beaches, dunes, and coastal wetlands caused by Hurricane Sandy and subsequent storm events. These data will provide a baseline dataset for use in future coastal change descriptive and predictive studies and assessments. The data presented here were collected as part of the U.S. Geological Survey’s Barrier Island and Estuarine Wetland Physical Change Assessment Project (http://coastal.er.usgs.gov/sandy-wetland-assessment/), which aims to assess ecological and societal vulnerability that results from long- and short-term physical changes to barrier islands and coastal wetlands. This report describes data that were collected in April 2015, approximately 2½ years after Hurricane Sandy’s landfall on October 29, 2012. During the field campaign, washover deposits were photographed and described, and sediment cores, sediment samples, and surface-elevation data were collected. Data collected during this study, including sample locations and elevations, core photographs, computed tomography scans, descriptive core logs, sediment grain-size data, and accompanying Federal Geographic Data Committee metadata, are available in the associated U.S. Geological Survey data release (Bishop and others, 2016; http://dx.doi.org/10.5066/F7PK0D7S).

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gardiner, W.W.; Barrows, E.S.; Antrim, L.D

Buttermilk Channel was one of seven waterways that was sampled and evaluated for dredging and sediment disposal. Sediment samples were collected and analyses were conducted on sediment core samples. The evaluation of proposed dredged material from the channel included bulk sediment chemical analyses, chemical analyses of site water and elutriate, water column and benthic acute toxicity tests, and bioaccumulation studies. Individual sediment core samples were analyzed for grain size, moisture content, and total organic carbon. A composite sediment samples, representing the entire area proposed for dredging, was analyzed for bulk density, polynuclear aromatic hydrocarbons, and 1,4-dichlorobenzene. Site water and elutriatemore » were analyzed for metals, pesticides, and PCBs.« less

Contamination Tracer Testing With Seabed Rock Drills: IODP Expedition 357

NASA Astrophysics Data System (ADS)

Orcutt, B.; Bergenthal, M.; Freudenthal, T.; Smith, D. J.; Lilley, M. D.; Schneiders, L.; Fruh-Green, G. L.

2016-12-01

IODP Expedition 357 utilized seabed rock drills for the first time in the history of the ocean drilling program, with the aim of collecting intact core of shallow mantle sequences from the Atlantis Massif to examine serpentinization processes and the deep biosphere. This new drilling approach required the development of a new system for delivering synthetic tracers during drilling to assess for possible sample contamination. Here, we describe this new tracer delivery system, assess the performance of the system during the expedition, provide an overview of the quality of the core samples collected for deep biosphere investigations based on tracer concentrations, and make recommendations for future applications of the system.

Contamination tracer testing with seabed drills: IODP Expedition 357

NASA Astrophysics Data System (ADS)

Orcutt, Beth N.; Bergenthal, Markus; Freudenthal, Tim; Smith, David; Lilley, Marvin D.; Schnieders, Luzie; Green, Sophie; Früh-Green, Gretchen L.

2017-11-01

IODP Expedition 357 utilized seabed drills for the first time in the history of the ocean drilling program, with the aim of collecting intact sequences of shallow mantle core from the Atlantis Massif to examine serpentinization processes and the deep biosphere. This novel drilling approach required the development of a new remote seafloor system for delivering synthetic tracers during drilling to assess for possible sample contamination. Here, we describe this new tracer delivery system, assess the performance of the system during the expedition, provide an overview of the quality of the core samples collected for deep biosphere investigations based on tracer concentrations, and make recommendations for future applications of the system.

Basic data from five core holes in the Raft River geothermal area, Cassia County, Idaho

USGS Publications Warehouse

Crosthwaite, E. G.

1976-01-01

meters) were completed in the area (Crosthwaite, 1974), and the Aerojet Nuclear Company, under the auspices of the U.S. Energy Research and Development Administration, was planning some deep drilling 4,000 to 6,000 feet (1,200 to 1,800 meters) (fig. 1). The purpose of the core drilling was to provide information to test geophysical interpretations of the subsurface structure and lithology and to provide hydrologic and geologic data on the shallow part of the geothermal system. Samples of the core were made available to several divisions and branches of the Geological Survey and to people and agencies outside the Survey. This report presents the basic data from the core holes that had been collected to September 1, 1975, and includes lithologic and geophysical well logs, chemical analyses of water (table 1), and laboratory analyses of cores (table 2) that were completed as of the above date. The data were collected by the Idaho District office, Hydrologic Laboratory, Borehole Geophysics Research Project, and Drilling, Sampling, and Testing Section, all of the Water Resources Division, and the Branch of Central Environmental Geology of the Geologic Divison.

Simulated In Situ Determination of Soil Profile Organic and Inorganic Carbon With LIBS and VisNIR

NASA Astrophysics Data System (ADS)

Bricklemyer, R. S.; Brown, D. J.; Clegg, S. M.; Barefield, J. E.

2008-12-01

There is growing need for rapid, accurate, and inexpensive methods to measure, and verify soil organic carbon (SOC) change for national greenhouse gas accounting and the development of a soil carbon trading market. Laser Induced Breakdown Spectroscopy (LIBS) and Visible and Near Infrared Spectroscopy (VisNIR) are complementary analytical techniques that have the potential to fill that need. The LIBS method provides precise elemental analysis of soils, but generally cannot distinguish between organic C and inorganic C. VisNIR has been established as a viable technique for measuring soil properties including SOC and inorganic carbon (IC). As part of the Big Sky Carbon Sequestration Regional Partnership, 240 intact core samples (3.8 x 50 cm) have been collected from six agricultural fields in north central Montana, USA. Each of these core samples were probed concurrently with LIBS and VisNIR at 2.5, 7.5, 12.5, 17.5, 22.5, 27.5, 35 and 45 cm (+/- 1.5 cm) depths. VisNIR measurements were taken using an Analytical Spectral Devices (ASD, Boulder, CO, USA) Agrispec spectrometer to determine the partition of SOC vs. IC in the samples. The LIBS scans were collected with the LANL LIBS Core Scanner Instrument which collected the entire 200 - 900 nm plasma emission including the 247.8 nm carbon emission line. This instrument also collected the emission from the elements typically found in inorganic carbon (Ca and Mg) and organic carbon (H, O, and N). Subsamples of soil (~ 4 g) were taken from interrogation points for laboratory determination of SOC and IC. Using this analytical data, we constructed several full spectrum multivariate VisNIR/LIBS calibration models for SOC and IC. These models were then applied to independent validation cores for model evaluation.

Establishing an efficient way to utilize the drought resistance germplasm population in wheat.

PubMed

Wang, Jiancheng; Guan, Yajing; Wang, Yang; Zhu, Liwei; Wang, Qitian; Hu, Qijuan; Hu, Jin

2013-01-01

Drought resistance breeding provides a hopeful way to improve yield and quality of wheat in arid and semiarid regions. Constructing core collection is an efficient way to evaluate and utilize drought-resistant germplasm resources in wheat. In the present research, 1,683 wheat varieties were divided into five germplasm groups (high resistant, HR; resistant, R; moderate resistant, MR; susceptible, S; and high susceptible, HS). The least distance stepwise sampling (LDSS) method was adopted to select core accessions. Six commonly used genetic distances (Euclidean distance, Euclid; Standardized Euclidean distance, Seuclid; Mahalanobis distance, Mahal; Manhattan distance, Manhat; Cosine distance, Cosine; and Correlation distance, Correlation) were used to assess genetic distances among accessions. Unweighted pair-group average (UPGMA) method was used to perform hierarchical cluster analysis. Coincidence rate of range (CR) and variable rate of coefficient of variation (VR) were adopted to evaluate the representativeness of the core collection. A method for selecting the ideal constructing strategy was suggested in the present research. A wheat core collection for the drought resistance breeding programs was constructed by the strategy selected in the present research. The principal component analysis showed that the genetic diversity was well preserved in that core collection.

Mineralogy of Gas Hydrate Bearing Sediment in Green Canyon Block 955 Northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Heber, R.; Kinash, N.; Cook, A.; Sawyer, D.; Sheets, J.; Johnson, J. E.

2017-12-01

Natural gas hydrates are of interest as a future hydrocarbon source, however, the formation and physical properties of such systems are not fully understood. In May 2017, the University of Texas drilled two holes in Green Canyon Block 955, northern Gulf of Mexico to collect pressurized core from a thick, 100 m accumulation of gas hydrate in a silt dominated submarine canyon levee system. The expedition, known as UT-GOM2-01, collected 21, 10-m pressure cores from Holes H002 and H005. Approximately half of the cores successfully pressurized and were fully recovered. Unsuccessful cores that did not pressurize generally had low core recovery. By analyzing the sediment composition in known gas hydrate reservoirs, we can construct a more detailed picture of how and why gas hydrates accumulate, as mineralogy can affect physical properties such as porosity and permeability as well as geophysical measurements such as resistivity. Using X-ray diffraction (XRD) on bulk sediment powders, we determined the bulk mineralogy of the samples. Moreover, we investigated drilling mud contamination using XRD and light optical analysis. In some cores, contamination was easily recognized visually as dense sludge between the core barrel and the recovered sediment core, however drilling mud is best observed both along the liner and interbedded within the sediment on X-ray computed tomography scans. To fully identify the presence and influence of drilling mud, we use XRD to analyze samples on cores collected both while drilling mud was used in hole and when only seawater was used in hole and consider the density anomalies observed on the XCT scans. The preliminary XRD light optical microscopy results show that the silt-dominated reservoir is primarily composed of quartz, with minor alkali feldspar, amphibole, muscovite, dolomite, and calcite. Samples from intervals with suspected drilling mud contamination show a similar composition, but with the addition of barite, a common component in drilling mud. Understanding why contamination occurs will improve the coring process and ensure maximum recovery in the future. The XRD data also show the presence of 7-angstrom clay minerals, most likely chlorite and serpentine, but more analysis is required in order to verify the identification and to establish relative abundances of each mineral.

Lead in Lake Michigan and Green Bay Surficial Sediments

EPA Science Inventory

Sediment cores were collected in 1987-1989 in Green Bay using a box corer and in 1994-1996 in Lake Michigan using a box corer and a PONAR. Core samples were segmented and dated. Historic background lead concentrations were determined for Green Bay (range=1.8-39.3 mg/kg, mean=14...

Megascopic lithologic studies of coals in the Powder River basin in Wyoming and in adjacent basins in Wyoming and North Dakota

USGS Publications Warehouse

Trippi, Michael H.; Stricker, Gary D.; Flores, Romeo M.; Stanton, Ronald W.; Chiehowsky, Lora A.; Moore, Timothy A.

2010-01-01

Between 1999 and 2007, the U.S. Geological Survey (USGS) investigated coalbed methane (CBM) resources in the Wyoming portion of the Powder River Basin. The study also included the CBM resources in the North Dakota portion of the Williston Basin of North Dakota and the Wyoming portion of the Green River Basin of Wyoming. This project involved the cooperation of the State Office, Reservoir Management Group (RMG) of the Bureau of Land Management (BLM) in Casper, Wyo., and 16 independent gas operators in the Powder River, Williston, and Green River Basins. The USGS and BLM entered into agreements with these CBM operators to supply samples for the USGS to analyze and provide the RMG with rapid, timely results of total gas desorbed, coal quality, and high-pressure methane adsorption isotherm data. This program resulted in the collection of 963 cored coal samples from 37 core holes. This report presents megascopic lithologic descriptive data collected from canister samples extracted from the 37 wells cored for this project.

Mercury content of Illinois soils

USGS Publications Warehouse

Dreher, G.B.; Follmer, L.R.

2004-01-01

For a survey of Illinois soils, 101 cores had been collected and analyzed to determine the current and background elemental compositions of Illinois soils. Mercury and other elements were determined in six samples per core, including a surface sample from each core. The mean mercury content in the surface samples was 33 ?? 20 ??g/kg soil, and the background content was 20 ?? 9 ??g/kg. The most probable sources of mercury in these soils were the parent material, and wet and dry deposition of Hg0 and Hg2+ derived from coal-burning power plants, other industrial plants, and medical and municipal waste incinerators. Mercury-bearing sewage sludge or other fertilizers applied to agricultural fields could have been the local sources of mercury. Although the mercury content correlated with organic carbon content or clay content in individual cores, when all the data were considered, there was no strong correlation between mercury and either the organic carbon or the clay-size content.

Seagrass morphometrics at species level in Moreton Bay, Australia from 2012 to 2013.

PubMed

Samper-Villarreal, Jimena; Roelfsema, Chris; Kovacs, Eva M; Adi, Novi S; Lyons, Mitchell; Mumby, Peter J; Lovelock, Catherine E; Saunders, Megan I; Phinn, Stuart R

2017-05-09

Seagrass above, below and total biomass, density and leaf area, length and width were quantified at a species level for 122 sites over three sampling periods in Moreton Bay, Australia. Core samples were collected in two regions: (1) a high water quality region with varying species assemblages and canopy complexity (98 sites); and (2) along a turbidity gradient in the bay (24 sites within four locations). Core samples were collected using a 15 cm diameter×20 cm long corer. Seagrass dry biomass per component was quantified per species present in each sample. A total of 220 biomass and density data records are included, 130 from the high water quality region and 90 from the turbidity gradient. These data provide a detailed assessment of biomass, density and leaf metrics per species sampled from Moreton Bay over 2012-2013. In future, these can be used as a baseline to assess seasonal and spatial variation within the bay, within the region and among regions.

Seagrass morphometrics at species level in Moreton Bay, Australia from 2012 to 2013

PubMed Central

Samper-Villarreal, Jimena; Roelfsema, Chris; Kovacs, Eva M.; Adi, Novi S.; Lyons, Mitchell; Mumby, Peter J.; Lovelock, Catherine E.; Saunders, Megan I.; Phinn, Stuart R.

2017-01-01

Seagrass above, below and total biomass, density and leaf area, length and width were quantified at a species level for 122 sites over three sampling periods in Moreton Bay, Australia. Core samples were collected in two regions: (1) a high water quality region with varying species assemblages and canopy complexity (98 sites); and (2) along a turbidity gradient in the bay (24 sites within four locations). Core samples were collected using a 15 cm diameter×20 cm long corer. Seagrass dry biomass per component was quantified per species present in each sample. A total of 220 biomass and density data records are included, 130 from the high water quality region and 90 from the turbidity gradient. These data provide a detailed assessment of biomass, density and leaf metrics per species sampled from Moreton Bay over 2012–2013. In future, these can be used as a baseline to assess seasonal and spatial variation within the bay, within the region and among regions. PMID:28485717

Phytoforensics: Trees as bioindicators of potential indoor exposure via vapor intrusion.

PubMed

Wilson, Jordan L; Samaranayake, V A; Limmer, Matt A; Burken, Joel G

2018-01-01

Human exposure to volatile organic compounds (VOCs) via vapor intrusion (VI) is an emerging public health concern with notable detrimental impacts on public health. Phytoforensics, plant sampling to semi-quantitatively delineate subsurface contamination, provides a potential non-invasive screening approach to detect VI potential, and plant sampling is effective and also time- and cost-efficient. Existing VI assessment methods are time- and resource-intensive, invasive, and require access into residential and commercial buildings to drill holes through basement slabs to install sampling ports or require substantial equipment to install groundwater or soil vapor sampling outside the home. Tree-core samples collected in 2 days at the PCE Southeast Contamination Site in York, Nebraska were analyzed for tetrachloroethene (PCE) and results demonstrated positive correlations with groundwater, soil, soil-gas, sub-slab, and indoor-air samples collected over a 2-year period. Because tree-core samples were not collocated with other samples, interpolated surfaces of PCE concentrations were estimated so that comparisons could be made between pairs of data. Results indicate moderate to high correlation with average indoor-air and sub-slab PCE concentrations over long periods of time (months to years) to an interpolated tree-core PCE concentration surface, with Spearman's correlation coefficients (ρ) ranging from 0.31 to 0.53 that are comparable to the pairwise correlation between sub-slab and indoor-air PCE concentrations (ρ = 0.55, n = 89). Strong correlations between soil-gas, sub-slab, and indoor-air PCE concentrations and an interpolated tree-core PCE concentration surface indicate that trees are valid indicators of potential VI and human exposure to subsurface environment pollutants. The rapid and non-invasive nature of tree sampling are notable advantages: even with less than 60 trees in the vicinity of the source area, roughly 12 hours of tree-core sampling with minimal equipment at the PCE Southeast Contamination Site was sufficient to delineate vapor intrusion potential in the study area and offered comparable delineation to traditional sub-slab sampling performed at 140 properties over a period of approximately 2 years.

Phytoforensics: Trees as bioindicators of potential indoor exposure via vapor intrusion

USGS Publications Warehouse

Wilson, Jordan L.; Samaranayake, V.A.; Limmer, Matthew A.; Burken, Joel G.

2018-01-01

Human exposure to volatile organic compounds (VOCs) via vapor intrusion (VI) is an emerging public health concern with notable detrimental impacts on public health. Phytoforensics, plant sampling to semi-quantitatively delineate subsurface contamination, provides a potential non-invasive screening approach to detect VI potential, and plant sampling is effective and also time- and cost-efficient. Existing VI assessment methods are time- and resource-intensive, invasive, and require access into residential and commercial buildings to drill holes through basement slabs to install sampling ports or require substantial equipment to install groundwater or soil vapor sampling outside the home. Tree-core samples collected in 2 days at the PCE Southeast Contamination Site in York, Nebraska were analyzed for tetrachloroethene (PCE) and results demonstrated positive correlations with groundwater, soil, soil-gas, sub-slab, and indoor-air samples collected over a 2-year period. Because tree-core samples were not collocated with other samples, interpolated surfaces of PCE concentrations were estimated so that comparisons could be made between pairs of data. Results indicate moderate to high correlation with average indoor-air and sub-slab PCE concentrations over long periods of time (months to years) to an interpolated tree-core PCE concentration surface, with Spearman’s correlation coefficients (ρ) ranging from 0.31 to 0.53 that are comparable to the pairwise correlation between sub-slab and indoor-air PCE concentrations (ρ = 0.55, n = 89). Strong correlations between soil-gas, sub-slab, and indoor-air PCE concentrations and an interpolated tree-core PCE concentration surface indicate that trees are valid indicators of potential VI and human exposure to subsurface environment pollutants. The rapid and non-invasive nature of tree sampling are notable advantages: even with less than 60 trees in the vicinity of the source area, roughly 12 hours of tree-core sampling with minimal equipment at the PCE Southeast Contamination Site was sufficient to delineate vapor intrusion potential in the study area and offered comparable delineation to traditional sub-slab sampling performed at 140 properties over a period of approximately 2 years.

Phytoforensics: Trees as bioindicators of potential indoor exposure via vapor intrusion

PubMed Central

2018-01-01

Human exposure to volatile organic compounds (VOCs) via vapor intrusion (VI) is an emerging public health concern with notable detrimental impacts on public health. Phytoforensics, plant sampling to semi-quantitatively delineate subsurface contamination, provides a potential non-invasive screening approach to detect VI potential, and plant sampling is effective and also time- and cost-efficient. Existing VI assessment methods are time- and resource-intensive, invasive, and require access into residential and commercial buildings to drill holes through basement slabs to install sampling ports or require substantial equipment to install groundwater or soil vapor sampling outside the home. Tree-core samples collected in 2 days at the PCE Southeast Contamination Site in York, Nebraska were analyzed for tetrachloroethene (PCE) and results demonstrated positive correlations with groundwater, soil, soil-gas, sub-slab, and indoor-air samples collected over a 2-year period. Because tree-core samples were not collocated with other samples, interpolated surfaces of PCE concentrations were estimated so that comparisons could be made between pairs of data. Results indicate moderate to high correlation with average indoor-air and sub-slab PCE concentrations over long periods of time (months to years) to an interpolated tree-core PCE concentration surface, with Spearman’s correlation coefficients (ρ) ranging from 0.31 to 0.53 that are comparable to the pairwise correlation between sub-slab and indoor-air PCE concentrations (ρ = 0.55, n = 89). Strong correlations between soil-gas, sub-slab, and indoor-air PCE concentrations and an interpolated tree-core PCE concentration surface indicate that trees are valid indicators of potential VI and human exposure to subsurface environment pollutants. The rapid and non-invasive nature of tree sampling are notable advantages: even with less than 60 trees in the vicinity of the source area, roughly 12 hours of tree-core sampling with minimal equipment at the PCE Southeast Contamination Site was sufficient to delineate vapor intrusion potential in the study area and offered comparable delineation to traditional sub-slab sampling performed at 140 properties over a period of approximately 2 years. PMID:29451904

Water and Sediment Quality in the Yukon River Basin, Alaska, During Water Year 2001

USGS Publications Warehouse

Schuster, Paul F.

2003-01-01

Overview -- This report contains water-quality and sediment-quality data from samples collected in the Yukon River Basin during water year 2001 (October 2000 through September 2001). A broad range of chemical and biological analyses from three sets of samples are presented. First, samples were collected throughout the year at five stations in the basin (three on the mainstem Yukon River, one each on the Tanana and Porcupine Rivers). Second, fecal indicators were measured on samples from drinking-water supplies collected near four villages. Third, sediment cores from five lakes throughout the Yukon Basin were sampled to reconstruct historic trends in the atmospheric deposition of trace elements and hydrophobic organic compounds.

Analyses of water, bank material, bottom material, and elutriate samples collected near Belzoni, Mississippi (upper Yazoo projects)

USGS Publications Warehouse

Brightbill, David B.; Treadway, Joseph B.

1980-01-01

Four core-material-sampling sites and one bottom-material site were chosen by the U.S. Army Corps of Engineers to represent areas of proposed dredging activity along a 24.9-mile reach of the upper Yazoo River. Five receiving-water sites also were selected to represent the water that will contact the proposed dredged material. Chemical and physical analyses were performed upon core or bottom material and native-water (receiving-water) samples from these sites as well as upon elutriate samples of the mixture of sediment and receiving water. The results of these analyses are presented without interpertation. (USGS)

The Yucca Mountain Project prototype air-coring test, U12g tunnel, Nevada test site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ray, J.M.; Newsom, J.C.

1994-12-01

The Prototype Air-Coring Test was conducted at the Nevada Test Site (NTS) G-Tunnel facility to evaluate standard coring techniques, modified slightly for air circulation, for use in testing at a prospective nuclear waste repository at Yucca Mountain, Nevada. Air-coring technology allows sampling of subsurface lithology with minimal perturbation to ambient characteristic such as that required for exploratory holes near aquifers, environmental applications, and site characterization work. Two horizontal holes were cored, one 50 ft long and the other 150 ft long, in densely welded fractured tuff to simulate the difficult drilling conditions anticipated at Yucca Mountain. Drilling data from sevenmore » holes on three other prototype tests in nonwelded tuff were also collected for comparison. The test was used to establish preliminary standards of performance for drilling and dust collection equipment and to assess procedural efficiencies. The Longyear-38 drill achieved 97% recovery for HQ-size core (-2.5 in.), and the Atlas Copco dust collector (DCT-90) captured 1500 lb of fugitive dust in a mine environment with only minor modifications. Average hole production rates were 6-8 ft per 6-h shift in welded tuff and almost 20 ft per shift on deeper holes in nonwelded tuff. Lexan liners were successfully used to encapsulate core samples during the coring process and protect core properties effectively. The Prototype Air-Coring Test demonstrated that horizontal air coring in fractured welded tuff (to at least 150 ft) can be safely accomplished by proper selection, integration, and minor modification of standard drilling equipment, using appropriate procedures and engineering controls. The test also indicated that rig logistics, equipment, and methods need improvement before attempting a large-scale dry drilling program at Yucca Mountain.« less

Rock and Core Repository Coming Digital

NASA Astrophysics Data System (ADS)

Maicher, Doris; Fleischer, Dirk; Czerniak, Andreas

2016-04-01

In times of whole city centres being available by a mouse click in 3D to virtually walk through, reality sometimes becomes neglected. The reality of scientific sample collections not being digitised to the essence of molecules, isotopes and electrons becomes unbelievable to the upgrowing generation of scientists. Just like any other geological institute the Helmholtz Centre for Ocean Research GEOMAR accumulated thousands of specimen. The samples, collected mainly during marine expeditions, date back as far as 1964. Today GEOMAR houses a central geological sample collection of at least 17 000 m of sediment core and more than 4 500 boxes with hard rock samples and refined sample specimen. This repository, having been dormant, missed the onset of the interconnected digital age. Physical samples without barcodes, QR codes or RFID tags need to be migrated and reconnected, urgently. In our use case, GEOMAR opted for the International Geo Sample Number IGSN as the persistent identifier. Consequentially, the software CurationDIS by smartcube GmbH as the central component of this project was selected. The software is designed to handle acquisition and administration of sample material and sample archiving in storage places. In addition, the software allows direct embedding of IGSN. We plan to adopt IGSN as a future asset, while for the initial inventory taking of our sample material, simple but unique QR codes act as "bridging identifiers" during the process. Currently we compile an overview of the broad variety of sample types and their associated data. QR-coding of the boxes of rock samples and sediment cores is near completion, delineating their location in the repository and linking a particular sample to any information available about the object. Planning is in progress to streamline the flow from receiving new samples to their curation to sharing samples and information publically. Additionally, interface planning for linkage to GEOMAR databases OceanRep (publications) and OSIS (expeditions) as well as for external data retrieval are in the pipeline. Looking ahead to implement IGSN, taking on board lessons learned from earlier generations, it will enable to comply with our institute's open science policy. Also it will allow to register newly collected samples already during ship expeditions. They thus receive their "birth certificate" contemporarily in this ever faster revolving scientific world.

Neighborhood sampling: how many streets must an auditor walk?

PubMed

McMillan, Tracy E; Cubbin, Catherine; Parmenter, Barbara; Medina, Ashley V; Lee, Rebecca E

2010-03-12

This study tested the representativeness of four street segment sampling protocols using the Pedestrian Environment Data Scan (PEDS) in eleven neighborhoods surrounding public housing developments in Houston, TX. The following four street segment sampling protocols were used (1) all segments, both residential and arterial, contained within the 400 meter radius buffer from the center point of the housing development (the core) were compared with all segments contained between the 400 meter radius buffer and the 800 meter radius buffer (the ring); all residential segments in the core were compared with (2) 75% (3) 50% and (4) 25% samples of randomly selected residential street segments in the core. Analyses were conducted on five key variables: sidewalk presence; ratings of attractiveness and safety for walking; connectivity; and number of traffic lanes. Some differences were found when comparing all street segments, both residential and arterial, in the core to the ring. Findings suggested that sampling 25% of residential street segments within the 400 m radius of a residence sufficiently represents the pedestrian built environment. Conclusions support more cost effective environmental data collection for physical activity research.

Neighborhood sampling: how many streets must an auditor walk?

PubMed Central

2010-01-01

This study tested the representativeness of four street segment sampling protocols using the Pedestrian Environment Data Scan (PEDS) in eleven neighborhoods surrounding public housing developments in Houston, TX. The following four street segment sampling protocols were used (1) all segments, both residential and arterial, contained within the 400 meter radius buffer from the center point of the housing development (the core) were compared with all segments contained between the 400 meter radius buffer and the 800 meter radius buffer (the ring); all residential segments in the core were compared with (2) 75% (3) 50% and (4) 25% samples of randomly selected residential street segments in the core. Analyses were conducted on five key variables: sidewalk presence; ratings of attractiveness and safety for walking; connectivity; and number of traffic lanes. Some differences were found when comparing all street segments, both residential and arterial, in the core to the ring. Findings suggested that sampling 25% of residential street segments within the 400 m radius of a residence sufficiently represents the pedestrian built environment. Conclusions support more cost effective environmental data collection for physical activity research. PMID:20226052

Geologic logs of geotechnical cores from the subsurface Sacramento-San Joaquin Delta, California

USGS Publications Warehouse

Maier, Katherine L.; Ponti, Daniel J.; Tinsley, John C.; Gatti, Emma; Pagenkopp, Mark

2014-01-01

This report presents and summarizes descriptive geologic logs of geotechnical cores collected from 2009–12 in the Sacramento–San Joaquin Delta, California, by the California Department of Water Resources. Graphic logs are presented for 1,785.7 ft of retained cores from 56 borehole sites throughout the Sacramento-San Joaquin Delta. Most core sections are from a depth of ~100–200 feet. Cores primarily contain mud, silt, and sand lithologies. Tephra (volcanic ash and pumice), paleosols, and gravels are also documented in some core sections. Geologic observations contained in the core logs in this report provide stratigraphic context for subsequent sampling and data for future chronostratigraphic subsurface correlations.

Archive of sediment data from vibracores collected in 2010 offshore of the Mississippi barrier islands

USGS Publications Warehouse

Kelso, Kyle W.; Flocks, James G.

2015-01-01

Selection of the core site locations was based on geophysical surveys conducted around the islands from 2008 to 2010. The surveys, using acoustic systems to image and interpret the nearsurface stratigraphy, were conducted to investigate the geologic controls on island evolution. This data series serves as an archive of sediment data collected from August to September 2010, offshore of the Mississippi barrier islands. Data products, including descriptive core logs, core photographs, results of sediment grain-size analyses, sample location maps, and geographic information system (GIS) data files with accompanying formal Federal Geographic Data Committee (FDGC) metadata can be downloaded from the data products and downloads page.

SPRUCE Deep Peat Heat (DPH) Metagenomes for Peat Samples Collected June 2015

DOE Data Explorer

Klumber, Laurel A. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Yang, Zamin K. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Schadt, Christopher W. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.

2015-01-01

This data set provides links to the results of metagenomic analyses of 38 peat core samples collected on 16 June 2015 from SPRUCE experiment treatment plots after approximately one year of belowground heating. These metagenomes are archived in the U.S. Department of Energy Joint Genome Institute (DOE JGI) Integrated Microbial Genomes (IMG) system and are available at the accession numbers provided in the accompanying inventory file.

Palaeoenvironmental reconstructions on the Mozambique coast as a tool to understand human evolution: from modern analogues to borehole interpretation

NASA Astrophysics Data System (ADS)

Gomes, Ana; Skosey-LaLonde, Elena; Zinsious, Brandon; Gonçalves, Célia; Bicho, Nuno; Raja, Mussa; Cascalheira, João; Haws, Jonathan

2017-04-01

In the framework of the project "Stone Age Vilankulos: Modern Human Origins Research South of the Rio Save, Mozambique" a geoarchaeological survey was conducted in 2016 aiming to better understand the environmental history and landscape evolution of the study area including the environmental context of human occupation. During the survey, 23 sediment surface samples were collected across a variety of environments, namely: freshwater environment - Elephant River basin in Southwestern Mozambique - and brackish and marine tidal environments - Inhambane coastal area, Southeastern Mozambique. These samples will be used as modern analogues to interpret the sedimentological and paleontological record of 4 cores collected in a mangrove area of the Inhambane estuary and then reconstruct its palaeoenvironmental evolution. All the sampling points were georeferenced and the study area was overflown with a drone to collect photogrammetric data. Both surface and core samples were used for diatom, texture and geochemical analysis. Diatoms will be used as the main palaeontological proxy, because they are unicellular algae with a short-live cycle and largely sensible to environmental variables such as salinity, sediment texture and duration of the tidal inundation. Preliminary data on the modern diatoms analysis showed that diatom diversity is high and the equitability is low in all environments. Cores sedimentological description and dating are also presented. The work was supported by the project PTDC/EPHARQ/4168/2014, funded by the Portuguese Foundation for Science and Technology.

Microbiology of the lower ocean crust - Preliminary results from IODP Expedition 360, Atlantis Bank

NASA Astrophysics Data System (ADS)

Sylvan, J. B.; Edgcomb, V. P.; Burgaud, G.; Klein, F.; Schubotz, F.; Expedition 360 Scientists, I.

2016-12-01

International Ocean Discovery Program (IODP) Expedition 360 represents the first leg of a multi-phase drilling program, SloMo, aimed at investigating the nature of the lower crust and Moho at slow spreading ridges. The goal of Expedition 360 was to recover a representative transect of the lower oceanic crust formed at Atlantis Bank, an oceanic core complex on the SW Indian Ridge. We present here preliminary analysis of microbial communities sampled from Hole U1473A, drilled to 789.7 m below seafloor during Expedition 360. Sub-sampling of core sections was conducted in a newly designed plexiglass enclosure with positive air pressure and HEPA filtered air, providing a clean environment for microbiology sampling aboard the JOIDES Resolution. Adenosine triphosphoate, an indicator of microbial biomass, was quantified above detection in 23 of 66 samples analyzed. We measured exoenzyme activity for alkaline phosphatase (AP), leucine aminopeptidase and arginine aminopeptidase in 16 samples and found AP to be very low but above background for 14 of the samples, with highest activities measured between 10 and 70 m below seafloor (mbsf) and peaks again at 158 and 307 mbsf, while both peptidase enzymes were above detection for only one sample at 715 mbsf. Isolates of fungi obtained from core samples as well as analyses of lipid and DNA biomarkers, and Raman spectra for a few of our rock core samples provide initial insights into microbial communities in the lower oceanic crust. Finally, a new tracer of seawater and drilling mud contamination, perfluoromethyl decaline (PFMD), was tested for the first time and its performance compared with the commonly used tracer perfluoromethylcyclohexane (PMCH). PFMD was run during coring operations for ten samples and was routinely detected in the drilling fluids, usually detected on the outside of uncleaned cores, and rarely above detection on the cleaned outside of cores. It was below detection on the inside of cores, indicating penetration of drill fluids to the interior of whole round drill cores, where we collected our samples, is unlikely.

Microplastics in Sediment Cores from Asia and Africa as Indicators of Temporal Trends in Plastic Pollution.

PubMed

Matsuguma, Yukari; Takada, Hideshige; Kumata, Hidetoshi; Kanke, Hirohide; Sakurai, Shigeaki; Suzuki, Tokuma; Itoh, Maki; Okazaki, Yohei; Boonyatumanond, Ruchaya; Zakaria, Mohamad Pauzi; Weerts, Steven; Newman, Brent

2017-08-01

Microplastics (<5 mm) were extracted from sediment cores collected in Japan, Thailand, Malaysia, and South Africa by density separation after hydrogen peroxide treatment to remove biofilms were and identified using FTIR. Carbonyl and vinyl indices were used to avoid counting biopolymers as plastics. Microplastics composed of variety of polymers, including polyethylene (PE), polypropylene (PP), polystyrene (PS), polyethyleneterphthalates (PET), polyethylene-polypropylene copolymer (PEP), and polyacrylates (PAK), were identified in the sediment. We measured microplastics between 315 µm and 5 mm, most of which were in the range 315 µm-1 mm. The abundance of microplastics in surface sediment varied from 100 pieces/kg-dry sediment in a core collected in the Gulf of Thailand to 1900 pieces/kg-dry sediment in a core collected in a canal in Tokyo Bay. A far higher stock of PE and PP composed microplastics in sediment compared with surface water samples collected in a canal in Tokyo Bay suggests that sediment is an important sink for microplastics. In dated sediment cores from Japan, microplastic pollution started in 1950s, and their abundance increased markedly toward the surface layer (i.e., 2000s). In all sediment cores from Japan, Thailand, Malaysia, and South Africa, the abundance of microplastics increased toward the surface, suggesting the global occurrence of and an increase in microplastic pollution over time.

Stratospheric measurements of ozone-depleting substances and greenhouse gases using AirCores

NASA Astrophysics Data System (ADS)

Laube, Johannes; Leedham Elvidge, Emma; Kaiser, Jan; Sturges, Bill; Heikkinen, Pauli; Laurila, Tuomas; Hatakka, Juha; Kivi, Rigel; Chen, Huilin; Fraser, Paul; van der Veen, Carina; Röckmann, Thomas

2017-04-01

Retrieving air samples from the stratosphere has previously required aircraft or large balloons, both of which are expensive to operate. The novel "AirCore" technique (Karion et al., 2010) enables stratospheric sampling using weather balloons, which is much more cost effective. AirCores are long (up to 200 m) stainless steel tubes which are placed as a payload on a small balloon, can ascend to over 30 km and fill upon descent, collecting a vertical profile of the atmosphere. Retrieved volumes are much smaller though, which presents a challenge for trace gas analysis. To date, only the more abundant trace gases such as carnon dioxide (CO2) and methane (CH4) have been quantified in AirCores. Halogenated trace gases are also important greenhouse gases and many also deplete stratospheric ozone. Their concentrations are however much lower i.e. typically in the part per trillion (ppt) molar range. We here present the first stratospheric measurements of halocarbons in AirCores obtained using UEA's highly sensitive (detection limits of 0.01-0.1 ppt in 10 ml of air) gas chromatography mass spectrometry system. The analysed air originates from a Stratospheric Air Sub-sampler (Mrozek et al., 2016) which collects AirCore segments after the non-destructive CO2 and CH4 analysis. Successfully measured species include CFC-11, CFC-12, CFC-113, CFC-115, H-1211, H-1301, HCFC-22, HCFC-141b, HCFC-142b, HCFC-133a, and sulphur hexafluoride (SF6). We compare the observed mixing ratios and precisions with data obtained from samples collected during various high-altitude aircraft campaigns between 2009 and 2016 as well as with southern hemisphere tropospheric long-term trends. As part of the ERC-funded EXC3ITE (EXploring stratospheric Composition, Chemistry and Circulation with Innovative Techniques) project more than 40 AirCore flights are planned in the next 3 years with an expanded range of up to 30 gases in order to explore seasonal and interannual variability in the stratosphere. References Karion et al., J. Atmos. Ocean. Technol., 27(11), 1839-1853, 2010 Mrozek et al., Atmos. Meas. Tech., 9, 5607-5620, 2016

Impacts of pollution derived from ship wrecks on the marine environment on the basis of s/s "Stuttgart" (Polish coast, Europe).

PubMed

Rogowska, Justyna; Wolska, Lidia; Namieśnik, Jacek

2010-11-01

In 1943 the German hospital ship s/s Stuttgart (Lazaretschiff "C") was sunk close to the port of Gdynia (Gulf of Gdańsk - Polish coast). This and other actions (undertaken after the war to remove the wreck) led to pollution of the sea bottom with oil derivatives. During our studies (2009) 11 surface sediment and water samples were collected as well as sediment core samples at 4 locations in order to determine the concentration levels of priority pollutants belonging to polycyclic aromatic hydrocarbons (PAH) and polychlorinated biphenyls (PCB). The concentrations of 16 PAH and 7 PCB were analysed with GC-MS. ΣPAH varied between 11.54 ± 0.39 and 206.7 ± 6.5mg/kg dry weight in the surface sediments, and from 0.686 ± 0.026 to 1291 ± 53 mg/kg dry weight in the core samples. Contamination in the core samples collected may reach a depth of at least 230-240 cm (deepest sample studied). The PAH-group profiles in all surface sediment samples suggest a pyrolytic source of PAH, while the results obtained for core samples indicate a mixed pattern of pyrolytic and petrogenic inputs of PAH. Results obtained may suggest also that fuel residues being present at sea bottom is not crude oil derived but results from coal processing (synthetic fuel). The sum of PCB in surface sediments ranged from 0.761 ± 0.068 to 6.82 ± 0.28 μg/kg dry weight (except for sampling point W2, where ΣPCB was 108.8 ± 4.4 μg/kg dry weight). The strong correlation between PAH and PCB levels, and the fact that PCB are present only in the surface sediments, suggest that the compounds in these sediments got there as a result of emission from urban areas, entering the aquatic environment via atmospheric deposition. PCB levels in the sediment core samples were generally very low and in most cases did not exceed the method quantification limit. Copyright © 2010 Elsevier B.V. All rights reserved.

Multi-scale ecosystem monitoring: an application of scaling data to answer multiple ecological questions

USDA-ARS?s Scientific Manuscript database

Background/Question/Methods Standardized monitoring data collection efforts using a probabilistic sample design, such as in the Bureau of Land Management’s (BLM) Assessment, Inventory, and Monitoring (AIM) Strategy, provide a core suite of ecological indicators, maximize data collection efficiency,...

Multiscale ecosystem monitoring: an application of scaling data to answer multiple ecological questions

USDA-ARS?s Scientific Manuscript database

Standardized monitoring data collection efforts using a probabilistic sample design, such as in the Bureau of Land Management’s (BLM) Assessment, Inventory, and Monitoring (AIM) Strategy, provide a core suite of ecological indicators, maximize data collection efficiency, and promote reuse of monitor...

Evaluation of dredged material proposed for ocean disposal from Gravesend Bay Anchorage, New York

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barrows, E.S.; Gruendell, B.D.

1996-09-01

The Gravesend Bay Anchorage was one of seven waterways that the US Army Corps of Engineers-New York District (USACE-NYD) requested the Battelle Marine Sciences Laboratory (MSL) to sample and evaluate for dredging and disposal in February 1994. Sediment samples were submitted for physical and chemical analyses to provide baseline sediment chemistry data on the Gravesend Bay Anchorage. Individual sediment core samples collected at the Gravesend Bay Anchorage were analyzed for grain size, moisture content, and total organic carbon (TOC). Two samples, one of composited sediment cores representing the southeast corner of the anchorage (COMP GR), and one sediment core representingmore » the northeast corner of the anchorage (Station GR-1 0), were analyzed for bulk density, specific gravity, metals, chlorinated pesticides, polychlorinated biphenyl (PCB) congeners, polynuclear aromatic hydrocarbons (PAH), and 1,4-dichlorobenzene.« less

Analysis of the dielectric properties of trunk wood in dominant conifer species from New England and Siberia

NASA Technical Reports Server (NTRS)

Ranson, K. J.; Rock, B. N.; Salas, W. A.; Smith, K.; Williams, D. L.

1992-01-01

Data were collected for dominant conifer species. Dielectric properties of trunk wood were measured using a C-band dielectric probe. For certain specimens, electrical resistance was also measured using a shigometer. The water status of the trees studies was determined either by use of a Scholander pressure chamber on branch samples collected simultaneously with dielectric measurements or by fresh-weight/dry-weight assessment of wood core samples extracted and analyzed with the dielectric probe and shigometer. Diurnal delectric properties and xylem water column tension are inversely correlated such that real and imaginary dielectric values drop as tension increases. The dielectric properties were positively correlated with wood core moisture content while electrical resistance was poorly correlated with wood core moisture content in one species studied. Results support the view that dielectric properties are strongly correlated with moisture status in trunk wood, and possibly ion concentrations associated with decay processes in damaged specimens.

Physical, Chemical, and Hydrologic Characteristics of Active Layer and Permafrost Soils of Arctic Polygonal Tundra, Barrow, Alaska, 2013-2016

DOE Data Explorer

Yuxin Wu; Craig Ulrich; Tim Kneafsey

2018-03-22

This dataset reports the results of physical, chemical, and hydrologic analyses of soil cores collected at the NGEE Arctic Intensive Sites 0 and 1 (Plots A, B, C, and D) during late winter seasons (April-May) from 2013 to 2016. Locations were selected across the polygonal ground to include low, flat, and high centered polygons (LCPs, FCPs and HCPs) and internal features (i.e. the trough, center, and rim). The data are depth-resolved and down to ~ 4m below ground surface for some cores. The specific depths for each core where samples were analyzed vary from core to core.

The Index to Marine and Lacustrine Geological Samples (IMLGS): Linking Digital Data to Physical Samples for the Marine Community

NASA Astrophysics Data System (ADS)

Stroker, K. J.; Jencks, J. H.; Eakins, B.

2016-12-01

The Index to Marine and Lacustrine Geological Samples (IMLGS) is a community designed and maintained resource enabling researchers to locate and request seafloor and lakebed geologic samples curated by partner institutions. The Index was conceived in the dawn of the digital age by representatives from U.S. academic and government marine core repositories and the NOAA National Geophysical Data Center, now the National Centers for Environmental Information (NCEI), at a 1977 meeting convened by the National Science Foundation (NSF). The Index is based on core concepts of community oversight, common vocabularies, consistent metadata and a shared interface. The Curators Consortium, international in scope, meets biennially to share ideas and discuss best practices. NCEI serves the group by providing database access and maintenance, a list server, digitizing support and long-term archival of sample metadata, data and imagery. Over three decades, participating curators have performed the laborious task of creating and contributing metadata for over 205,000 sea floor and lake-bed cores, grabs, and dredges archived in their collections. Some partners use the Index for primary web access to their collections while others use it to increase exposure of more in-depth institutional systems. The IMLGS has a persistent URL/Digital Object Identifier (DOI), as well as DOIs assigned to partner collections for citation and to provide a persistent link to curator collections. The Index is currently a geospatially-enabled relational database, publicly accessible via Web Feature and Web Map Services, and text- and ArcGIS map-based web interfaces. To provide as much knowledge as possible about each sample, the Index includes curatorial contact information and links to related data, information and images : 1) at participating institutions, 2) in the NCEI archive, and 3) through a Linked Data interface maintained by the Rolling Deck to Repository R2R. Over 43,000 International GeoSample Numbers (IGSNs) linking to the System for Earth Sample Registration (SESAR) are included in anticipation of opportunities for interconnectivity with Integrated Earth Data Applications (IEDA) systems. The paper will discuss the database with a goal to increase the connections and links to related data at partner institutions.

The National Riparian Core Protocol: A riparian vegetation monitoring protocol for wadeable streams of the conterminous United States

Treesearch

David M. Merritt; Mary E. Manning; Nate Hough-Snee

2017-01-01

Riparian areas are hotspots of biological diversity that may serve as high quality habitat for fish and wildlife. The National Riparian Core Protocol (NRCP) provides tools and methods to assist natural resource professionals in sampling riparian vegetation and physical characteristics along wadeable streams. Guidance is provided for collecting basic information on...

Factors That Predict Marijuana Use and Grade Point Average among Undergraduate College Students

ERIC Educational Resources Information Center

Coco, Marlena B.

2017-01-01

The purpose of this study was to analyze factors that predict marijuana use and grade point average among undergraduate college students using the Core Institute national database. The Core Alcohol and Drug Survey was used to collect data on students' attitudes, beliefs, and experiences related to substance use in college. The sample used in this…

RETROSPECTIVE EVALUATION OF A SURFACTANT FLUSH TO REMOVE GASOLINE CONTAMINATION FROM AN AQUFIER IN GOLDEN, OKLAHOMA

EPA Science Inventory

After remedial activities are complete, the SPRD will collect, extract, and analyze core samples from selected locations previously sampled by Surbec-ART as part of their characterization prior to remediation. The concentration of benzene, toluene, ethylbenzene, xylenes, and gaso...

IMPACT OF OIL PRODUCTION RELEASES ON SOME SOIL CHEMICAL PROPERTIES AT THE OSPER SITES

EPA Science Inventory

Surface and soil core samples were collected at two field sites in an old oil production area near Skiatook Lake in Oklahoma. The soil samples were analyzed for nitrates, organic matter, total petroleum hydrocarbons, conductivity, chlorides and dehydrogenase activity. Low level...

Combined optical coherence tomography and hyper-spectral imaging

NASA Astrophysics Data System (ADS)

Attendu, Xavier; Guay-Lord, Robin; Strupler, Mathias; Godbout, Nicolas; Boudoux, Caroline

2017-02-01

In this proceeding we demonstrate a system combining optical coherence tomography (OCT) and hyper-spectral imaging (HSI) into a single dual-clad fiber (DCF). Combining these modalities gives access to the sample morphology through OCT and to its molecular content through HSI. Both modalities have their illumination through the fiber core. The OCT is then collected through the core while the HSI is collected through the inner cladding of the DCF. A double-clad fiber coupler (DCFC) is used to address both channels separately. A scanning spectral filter was developed to successively inject narrow spectral bands of visible light into the fiber core and sweep across the entire visible spectrum. This allows for rapid HSI acquisition and high miniaturization potential.

Radionuclides (210Po and 210Pb) and Some Heavy Metals in Fish and Sediments in Lake Bafa, Turkey, and the Contribution of 210Po to the Radiation Dose.

PubMed

Manav, Ramazan; Uğur Görgün, Aysun; Filizok, Işık

2016-11-09

The pollution level of Lake Bafa was investigated by collecting fish samples { Dicentrarchus labrax (sea bass), Liza ramada (mullet) and Anguilla anguilla (eel)}, surface sediment, and core samples. In all these samples, 210 Po and 210 Pb concentrations were estimated, and total annual dose rates were obtained for each species. Some heavy metal (Cr, Ni, Pb, Cd, Mn, Fe, and Zn) concentration levels were obtained for the fish and a core sample. The sediment mass accumulation rate was found to be 3.27 g·m -2 ·day -1 (0.119 g·cm -2 ·y -1 ) from a core sample. The heavy metal concentrations in the vertical profile of samples from the core were also observed. The measured concentration of Zn, Pb, Cd, and Cr were between the ERL (effects range low) and ERM (effects range median) limits, while Ni concentrations were higher than the ERM limit. The observed concentrations of Cd, Pb, and Zn in fish samples did not exceed the limits in accordance with Turkish Food Regulations. Further, the maximum effective dose equivalent of 210 Po in the area was found to be 1.169 µSv·y -1 .

A Composite Depth Scale for Sediments from Crevice Lake, Montana

USGS Publications Warehouse

Rosenbaum, J.G.; Skipp, G.; Honke, J.; Chapman, C.

2010-01-01

As part of a study to derive records of past environmental change from lake sediments in the western United States, a set of cores was collected from Crevice Lake, Montana, in late February and early March 2001. Crevice Lake (latitude 45.000N, longitude 110.578W, elevation 1,713 meters) lies adjacent to the Yellowstone River at the north edge of Yellowstone National Park. The lake is more than 31 meters deep and has a surface area of 7.76 hectares. The combination of small surface area and significant depth promote anoxic bottom-water conditions that preserve annual laminations (varves) in the sediment. Three types of cores were collected through the ice. The uppermost sediments were obtained in freeze cores that preserved the sediment water interface. Two sites were cored with a 5-centimeter diameter corer. Five cores were taken with a 2-meter-long percussion piston corer. The percussion core uses a plastic core liner with an inside diameter of 9 centimeters. Coring was done at two sites. Because of the relatively large diameter of the percussion cores, samples from these cores were used for a variety of analyses including pollen, charcoal, diatoms, stable isotopes, organic and inorganic carbon, elemental analyses, and magnetic properties.

Trace elements and organic compounds in sediment and fish tissue from the Great Salt Lake basins, Utah, Idaho, and Wyoming, 1998-99

USGS Publications Warehouse

Waddell, Kidd M.; Giddings, Elise M.

2004-01-01

A study to determine the occurrence and distribution of trace elements, organochlorine pesticides, polychlorinated biphenyls (PCBs), and semivolatile organic compounds in sediment and in fish tissue was conducted in the Great Salt Lake Basins study unit of the National Water-Quality Assessment (NAWQA) program during 1998-99. Streambed-sediment and fish-tissue samples were collected concurrently at 11 sites and analyzed for trace-element concentration. An additional four sites were sampled for streambed sediment only and one site for fish tissue only. Organic compounds were analyzed from streambed-sediment and fish-tissue samples at 15 sites concurrently.Bed-sediment cores from lakes, reservoirs, and Farmington Bay collected by the NAWQA program in 1998 and by other researchers in 1982 were used to examine historical trends in trace-element concentration and to determine anthropogenic sources of contaminants. Cores collected in 1982 from Mirror Lake, a high-mountain reference location, showed an enrichment of arsenic, cadmium, copper, lead, tin, and zinc in the surface sediments relative to the deeper sediments, indicating that enrichment likely began after about 1900. This enrichment was attributed to atmospheric deposition during the period of metal-ore mining and smelting. A core from Echo Reservoir, in the Weber River Basin, however, showed a different pattern of trace-element concentration that was attributed to a local source. This site is located downstream from the Park City mining district, which is the most likely historical source of trace elements. Cores collected in 1998 from Farmington Bay show that the concentration of lead began to increase after 1842 and peaked during the mid-1980s and has been in decline since. Recent sediments deposited during 1996-98 indicate a 41- to 62-percent reduction since the peak in the mid-1980s.The concentration of trace elements in streambed sediment was greatest at sites that have been affected by historic mining, including sites on Little Cottonwood Creek in the Jordan River basin, Silver Creek in the Weber River basin, and the Weber River below the confluence with Silver Creek. There was significant correlation of lead concentrations in streambed sediment and fish tissue, but other trace elements did not correlate well. Streambed sediment and fish tissue collected from sites in the Bear River basin, which is predominantly rangeland and agriculture, generally had low concentrations of most elements.Sediment-quality guidelines were used to assess the relative toxicity of streambed-sediment sites to aquatic communities. Sites affected by mining exceeded the Probable Effect Concentration (PEC), the concentration at which it is likely there will be a negative effect on the aquatic community, for arsenic, cadmium, copper, lead, silver, mercury, and zinc. Sites that were not affected by mining did not exceed these criteria. Concentrations of trace elements in samples collected from the Great Salt Lake Basins study unit (GRSL) are high compared to those of samples collected nationally with the NAWQA program. Nine of 15 streambed-sediment samples and 11 of 14 fish-tissue samples had concentrations of at least one trace element greater than the concentration of 90 percent of the samples collected nationally during 1993-2000.Organic compounds that were examined in streambed sediment and fish-tissue samples also were examined in bed-sediment cores. A bed-sediment core from Farmington Bay of Great Salt Lake showed an increase in total polycyclic aromatic hydrocarbon (PAH) concentrations coincident with the increase in population in Salt Lake Valley, which drains into this bay. Analysis of streambed-sediment samples showed that the highest concentrations of PAHs were detected at urban sites, including two sites in the lower Jordan River (the Jordan River flows into Farmington Bay), the Weber River at Ogden Bay, and the Provo River near Provo. Other organic compounds detected in streambed sediment in the lower Jordan River were PCBs, DDT compounds, and chlordane compounds.Organic compounds were detected more frequently in fish tissue than in streambed sediment. Chlordane compounds and PCBs were detected more frequently at urban sites. DDT compounds were detected at 13 of 15 sites including urban and agricultural sites. Concentrations of total DDT in fish tissue exceeded the guideline for protection of fish-eating wildlife at two urban sites. The concentration of organic compounds in the GRSL study unit is low compared with that of samples collected nationally.

Low faunal diversity on Maltese sandy beaches: fact or artefact?

NASA Astrophysics Data System (ADS)

Deidun, Alan; Azzopardi, Marthese; Saliba, Stephen; Schembri, Patrick J.

2003-10-01

Eight sandy beaches on Malta and two on Gozo were sampled for macrofauna to test the hypothesis that Maltese beaches have an intrinsically low diversity. Stations distributed in the supralittoral (dry zone), mediolittoral (wet zone) and upper infralittoral (submerged zone to 1 m water depth) were sampled by sieving core samples and standardised searching during daytime, and pitfall trapping and standardised sweeping of the water column using a hand-net at night, as appropriate. Physical parameters of the sediment were measured and human occupancy of the beaches was estimated. From the supralittoral and mediolittoral, 39 species represented by 1584 individuals were collected by the combined techniques of pitfall trapping, sieving and standard searching. For Ramla beach, which had the highest diversity, 267 individuals representing 25 infaunal species were collected by sieving from a combined volume of 1.175 m 3 of sand, and 149 individuals representing 28 epifaunal species were collected by standardised searching from a combined area of 700 m 2 of sand during two winter and two summer sampling sessions between 1992 and 1993. For nine other beaches sampled during the summer of 2000, only six macrofaunal species were collected from core samples, with overall population densities ranging from 4.13 to 45.45 individuals m -2. Only 92 individuals belonging to 12 species were collected by hand-net from the uppermost infralittoral of five beaches sampled using this method during the summer of 2000. Taxa of gastropods, bivalves, decapods, mysids and staphylinid beetles generally abundant on Mediterranean sandy beaches, were entirely absent from the beaches sampled. Few correlations that could explain the impoverishment of Maltese sandy beaches were found between physical parameters and faunal abundances, and other factors such as inadequate sampling effort, human disturbance and marine pollution were also excluded; however, seasonally biased sampling may partly explain the results obtained. One factor that may explain why certain species are missing could be lack of recruitment, due to Malta's geographical isolation from the European and African mainlands.

2017 EULAR recommendations for a core data set to support observational research and clinical care in rheumatoid arthritis.

PubMed

Radner, Helga; Chatzidionysiou, Katerina; Nikiphorou, Elena; Gossec, Laure; Hyrich, Kimme L; Zabalan, Condruta; van Eijk-Hustings, Yvonne; Williamson, Paula R; Balanescu, Andra; Burmester, Gerd R; Carmona, Loreto; Dougados, Maxime; Finckh, Axel; Haugeberg, Glenn; Hetland, Merete Lund; Oliver, Susan; Porter, Duncan; Raza, Karim; Ryan, Patrick; Santos, Maria Jose; van der Helm-van Mil, Annette; van Riel, Piet; von Krause, Gabrielle; Zavada, Jakub; Dixon, William G; Askling, Johan

2018-04-01

Personalised medicine, new discoveries and studies on rare exposures or outcomes require large samples that are increasingly difficult for any single investigator to obtain. Collaborative work is limited by heterogeneities, both what is being collected and how it is defined. To develop a core set for data collection in rheumatoid arthritis (RA) research which (1) allows harmonisation of data collection in future observational studies, (2) acts as a common data model against which existing databases can be mapped and (3) serves as a template for standardised data collection in routine clinical practice to support generation of research-quality data. A multistep, international multistakeholder consensus process was carried out involving voting via online surveys and two face-to-face meetings. A core set of 21 items ('what to collect') and their instruments ('how to collect') was agreed: age, gender, disease duration, diagnosis of RA, body mass index, smoking, swollen/tender joints, patient/evaluator global, pain, quality of life, function, composite scores, acute phase reactants, serology, structural damage, treatment and comorbidities. The core set should facilitate collaborative research, allow for comparisons across studies and harmonise future data from clinical practice via electronic medical record systems. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Chemistry of water collected from an unventilated drift, Yucca Mountain, Nevada

USGS Publications Warehouse

Marshall, B.D.; Oliver, T.A.; Peterman, Z.E.

2007-01-01

Water samples (referred to as puddle water samples) were collected from the surfaces of a conveyor belt and plastic sheeting in the unventilated portion of the Enhanced Characterization of the Repository Block (ECRB) Cross Drift in 2003 and 2005 at Yucca Mountain, Nevada. The chemistry of these puddle water samples is very different than that of pore water samples from borehole cores in the same region of the Cross Drift or than seepage water samples collected from the Exploratory Studies Facility tunnel in 2005. The origin of the puddle water is condensation on surfaces of introduced materials and its chemistry is dominated by components of the introduced materials. Large CO2 concentrations may be indicative of localized chemical conditions induced by biologic activity. ?? 2007 Materials Research Society.

Spatial Variability of Climate Signatures Recorded in an Array of Shallow Firn Cores from the Western Greenland Percolation Zone

NASA Astrophysics Data System (ADS)

Thundercloud, Z. R.; Osterberg, E. C.; Ferris, D. G.; Graeter, K.; Lewis, G.; Hawley, R. L.; Marshall, H. P.

2016-12-01

Greenland ice cores provide seasonally to annually resolved proxy records of past temperature, accumulation and atmospheric circulation. Most Greenland ice cores have been collected from the dry snow zone at elevations greater than 2500 m to produce records of North Atlantic paleoclimate over the last full glacial cycle. Ice cores collected from more costal regions, however, provide the opportunity to develop regional-scale records of climate conditions along ice sheet margins where recent temperature and precipitation changes have been larger than those in the ice sheet interior. These cores are more readily comparable to lake sediment and landscape (i.e. moraine) records from the ice sheet margin, and are potentially more sensitive to sea-ice variability due to the proximity to the coast. Here we present major ion and stable isotope records from an array of firn cores (40-55 year records) collected in the western Greenland percolation zone, and assess the spatial variability of ice core statistical relationships with the North Atlantic Oscillation (NAO) and Baffin Bay sea ice extent. Seven cores were collected from elevations of 2100-2500 m along a 400-km segment of the ice sheet from Dye-2 to Milcent as part of the Greenland Traverse for Accumulation and Climate Studies (GreenTrACS) project from May-June 2016. They were sampled by a continuous melter system at Dartmouth College, and analyzed using Dionex ion chromatographs and a Picarro L2130-i laser ring-down spectrometer. We focus on the signature of the NAO and Baffin Bay sea ice extent in the sea-salt, dust, deuterium excess (d-excess), and methanesulfonic acid (MSA) firn core records, and assess the special variability of these climate-ice core relationships across the study area. Climate reanalysis data indicate that NAO-ice core correlations should be stronger at lower elevation in the percolation zone than high in the dry snow zone. Our results will provide valuable insight into the sensitivity of Greenland ice core paleoclimate reconstructions to the specific ice core location, and thereby aid in site selection for deeper ice cores that could span the Holocene.

Origin, transport and deposition of leaf-wax biomarkers in the Amazon Basin and the adjacent Atlantic

NASA Astrophysics Data System (ADS)

Häggi, Christoph; Sawakuchi, André O.; Chiessi, Cristiano M.; Mulitza, Stefan; Mollenhauer, Gesine; Sawakuchi, Henrique O.; Baker, Paul A.; Zabel, Matthias; Schefuß, Enno

2016-11-01

Paleoenvironmental studies based on terrigenous biomarker proxies from sediment cores collected close to the mouth of large river systems rely on a proper understanding of the processes controlling origin, transport and deposition of biomarkers. Here, we contribute to the understanding of these processes by analyzing long-chain n-alkanes from the Amazon River system. We use the δD composition of long-chain n-alkanes from river bed sediments from the Amazon River and its major tributaries, as well as marine core-top samples collected off northeastern South America as tracers for different source areas. The δ13C composition of the same compounds is used to differentiate between long-chain n-alkanes from modern forest vegetation and petrogenic organic matter. Our δ13C results show depleted δ13C values (-33 to -36‰) in most samples, indicating a modern forest source for most of the samples. Enriched values (-31 to -33‰) are only found in a few samples poor in organic carbon indicating minor contributions from a fossil petrogenic source. Long-chain n-alkane δD analyses show more depleted values for the western tributaries, the Madeira and Solimões Rivers (-152 to -168‰), while n-alkanes from the lowland tributaries, the Negro, Xingu and Tocantins Rivers (-142 to -154‰), yield more enriched values. The n-alkane δD values thus reflect the mean annual isotopic composition of precipitation, which is most deuterium-depleted in the western Amazon Basin and more enriched in the eastern sector of the basin. Samples from the Amazon estuary show a mixed long-chain n-alkane δD signal from both eastern lowland and western tributaries. Marine core-top samples underlying the Amazon freshwater plume yield δD values similar to those from the Amazon estuary, while core-top samples from outside the plume showed more enriched values. Although the variability in the river bed data precludes quantitative assessment of relative contributions, our results indicate that long-chain n-alkanes from the Amazon estuary and plume represent an integrated signal of different regions of the onshore basin. Our results also imply that n-alkanes are not extensively remineralized during transport and that the signal at the Amazon estuary and plume includes refractory compounds derived from the western sector of the Basin. These findings will aid in the interpretation of plant wax-based records of marine sediment cores collected from the adjacent ocean.

Patterns in bacterial and archaeal community structure and diversity in western Beaufort Sea sediments and waters

NASA Astrophysics Data System (ADS)

Hamdan, L. J.; Sikaroodi, M.; Coffin, R. B.; Gillevet, P. M.

2010-12-01

A culture-independent phylogenetic study of microbial communities in water samples and sediment cores recovered from the Beaufort Sea slope east of Point Barrow, Alaska was conducted. The goal of the work was to describe community composition in sediment and water samples and determine the influence of local environmental conditions on microbial populations. Archaeal and bacterial community composition was studied using length heterogeneity-polymerase chain reaction (LH-PCR) and multitag pyrosequencing (MTPS). Sediment samples were obtained from three piston cores on the slope (~1000m depth) arrayed along an east-west transect and one core from a depth of approximately 2000m. Discrete water samples were obtained using a CTD-rosette from three locations adjacent to piston core sites. Water sample were selected at three discrete depths within a vertically stratified (density) water column. The microbial community in near surface waters was distinct from the community observed in deeper stratified layers of the water column. Multidimensional scaling analysis (MDS) revealed that water samples from mid and deep stratified layers bore high similarity to communities in cores collected in close proximity. Overall, the highest diversity (bacteria and archaea) was observed in a core which had elevated methane concentration relative to other locations. Geochemical (e.g., bulk organic and inorganic carbon pools, nutrients, metabolites) and physical data (e.g. depth, water content) were used to reveal the abiotic factors structuring microbial communities. The analysis indicates that sediment water content (porosity) and inorganic carbon concentration are the most significant structuring elements on Beaufort shelf sedimentary microbial communities.

Real-Time and Delayed Analysis of Tree and Shrub Cores as Indicators of Subsurface Volatile Organic Compound Contamination, Durham Meadows Superfund Site, Durham, Connecticut, August 29, 2006

USGS Publications Warehouse

Vroblesky, Don A.; Willey, Richard E.; Clifford, Scott; Murphy, James J.

2008-01-01

This study examined volatile organic compound concentrations in cores from trees and shrubs for use as indicators of vadose-zone contamination or potential vapor intrusion by volatile organic compounds into buildings at the Durham Meadows Superfund Site, Durham, Connecticut. The study used both (1) real-time tree- and shrub-core analysis, which involved field heating the core samples for 5 to 10 minutes prior to field analysis, and (2) delayed analysis, which involved allowing the gases in the cores to equilibrate with the headspace gas in the sample vials unheated for 1 to 2 days prior to analysis. General correspondence was found between the two approaches, indicating that preheating and field analysis of vegetation cores is a viable approach to real-time monitoring of subsurface volatile organic compounds. In most cases, volatile organic compounds in cores from trees and shrubs at the Merriam Manufacturing Company property showed a general correspondence to the distribution of volatile organic compounds detected in a soil-gas survey, despite the fact that most of the soil-gas survey data in close proximity to the relevant trees were collected about 3 years prior to the tree-core collection. Most of the trees cored at the Durham Meadows Superfund Site, outside of the Merriam Manufacturing Company property, contained no volatile organic compounds and were in areas where indoor air sampling and soil-gas sampling showed little or no volatile organic compound concentrations. An exception was tree DM11, which contained barely detectable concentrations of trichloroethene near a house where previous investigations found low concentrations of trichloroethene (0.13 to 1.2 parts per billion by volume) in indoor air and 7.7 micrograms per liter of trichloroethene in the ground water. The barely detectable concentration of trichloroethene in tree DM11 and the lack of volatile organic compound detection in nearby tree DM10 (adjacent to the well having 7.7 micrograms of trichloroethene) may be attributable to the relatively large depth to water (17.6 feet), the relatively low soil-vapor trichloroethene concentration, and the large amount of rainfall during and preceding the tree-coring event. The data indicate that real-time and delayed analyses of tree cores are viable approaches to examining subsurface volatile organic compound soil-gas or vadose-zone contamination at the Durham Meadows Superfund Site and other similar sites. Thus, the methods may have application for determining the potential for vapor intrusion into buildings.

Environmental research on a modified in situ oil shale task process. Progress report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1980-05-01

This report summarizes the progress of the US Department of Energy's Oil Shale Task Force in its research program at the Occidental Oil Shale, Inc. facility at Logan Wash, Colorado. More specifically, the Task Force obtained samples from Retort 3E and Retort 6 and submitted these samples to a variety of analyses. The samples collected included: crude oil (Retort 6); light oil (Retort 6); product water (Retort 6); boiler blowdown (Retort 6); makeup water (Retort 6); mine sump water; groundwater; water from Retorts 1 through 5; retort gas (Retort 6); mine air; mine dust; and spent shale core (Retort 3E).more » The locations of the sampling points and methods used for collection and storage are discussed in Chapter 2 (Characterization). These samples were then distributed to the various laboratories and universities participating in the Task Force. For convenience in organizing the data, it is useful to group the work into three categories: Characterization, Leaching, and Health Effects. While many samples still have not been analyzed and much of the data remains to be interpreted, there are some preliminary conclusions the Task Force feels will be helpful in defining future needs and establishing priorities. It is important to note that drilling agents other than water were used in the recovery of the core from Retort 3E. These agents have been analyzed (see Table 12 in Chapter 2) for several constituents of interest. As a result some of the analyses of this core sample and leachates must be considered tentative.« less

Distribution and depth profiles of polychlorinated dibenzo-p-dioxins, polychlorinated dibenzofurans, and polychlorinated biphenyls in sediment collected from offshore waters of Central Vietnam.

PubMed

Tri, Tran Manh; Anh, Hoang Quoc; Tham, Trinh Thi; Van Quy, Tran; Long, Nguyen Quang; Nhung, Dao Thi; Nakamura, Masafumi; Nishida, Masayo; Maeda, Yasuaki; Van Boi, Luu; Minh, Tu Binh

2016-05-15

Concentrations of PCBs and OCPs were measured in 35 surface sediment samples collected from offshore waters of Central Vietnam. The mean concentrations of PCBs, HCHs, and DDTs in surface sediments were 86.5, 37.0, and 44.5pgg(-1), respectively. Additionally, nine PCDDs, eleven PCDFs, and twelve dl-PCBs were also examined in 19 sediment core samples collected from five locations. Concentration of PCDDs, PCDFs, and dl-PCBs ranged from 200 to 460, 0.39 to 2.9, and 1.6 to 22pgg(-1), respectively. OCDD was detected at the highest concentration, ranged from 100 to 300pgg(-1). Generally, the concentrations of PCDD/Fs at shallower depths were higher, meanwhile the depth profiles of dl-PCBs in sediment cores were different than the depth profiles of PCDD/Fs. The results suggest that the pollution of PCBs might be from many different sources leading to the variation between depths. Copyright © 2016 Elsevier Ltd. All rights reserved.

Constraints on Inner Core Anisotropy Using Array Observations of P'P'

NASA Astrophysics Data System (ADS)

Frost, Daniel A.; Romanowicz, Barbara

2017-11-01

Recent studies of PKPdf travel times suggest strong anisotropy (4% or more) in the quasi-western inner core hemisphere. However, the availability of paths sampling at low angles to the Earth's rotation axis (the fast axis) is limited. To augment this sampling, we collected a travel time data set for the phase P'P'df (PKPPKPdf), for which at least one inner core leg is quasi-polar, at two high latitude seismic arrays. We find that the inferred anisotropy is weak (on the order of 0.5 to 1.5%), confirming previous results based on a much smaller P'P' data set. While previous models of inner core anisotropy required very strong alignment of anisotropic iron grains, our results are more easily explained by current dynamic models of inner core growth. We observe large travel time anomalies when one leg of P'P'df is along the South Sandwich to Alaska path, consistent with PKPdf observations, and warranting further investigation.

K-Ar chronology of the Luohe iron district, Anhui Province, China

USGS Publications Warehouse

McKee, E.H.

1988-01-01

Twelve samples of rock from the four mapped units or cycles and one of the major intrusive bodies were collected and evaluated for K-Ar age determination. These include specimens from outcrop and from drill core. Biotite from two outcrop and two core samples and hornblende from one outcrop sample were separated from the sample and dated; a sixth sample was dated using crushed, sieved, and acid-treated whole rock. The ages and analytical data to support them are compatible with the observed relationships in the field or from the drill holes. The percent of K2O in all samples is typical of fresh unaltered mineral phases and the percent of radiogenetic 40Ar relative to total 40Ar is high (88.8 to 63.8%) yielding relatively low analytical errors. -from Authors

Oscillatory erosion and transport flume with superimposed unidirectional flow

DOEpatents

Jepsen, Richard A.; Roberts, Jesse D.

2004-01-20

A method and apparatus for measuring erosion rates of sediments and at high shear stresses due to complex wave action with, or without, a superimposed unidirectional current. Water is forced in a channel past an exposed sediment core sample, which erodes sediments when a critical shear stress has been exceeded. The height of the core sample is adjusted during testing so that the sediment surface remains level with the bottom of the channel as the sediments erode. Complex wave action is simulated by driving tandom piston/cylinder mechanisms with computer-controlled stepper motors. Unidirectional flow, forced by a head difference between two open tanks attached to each end of the channel, may be superimposed on to the complex wave action. Sediment traps may be used to collect bedload sediments. The total erosion rate equals the change in height of the sediment core sample divided by a fixed period of time.

Evaluation of solar flares and electron precipitation by nitrate distribution in Antarctica

NASA Astrophysics Data System (ADS)

Dreschhoff, Gisela A.; Zeller, Edward J.

1991-10-01

Most of the time devoted to project research was spent in Antarctica. A firm core was drilled by hand to a depth of 29 meters at Windless Bight on the Ross Ice Shelf. The main result is that all of the major peaks identified as resulting from ionization caused by SPEs that were found in the 1988-89 core could also be identified in the analytical sequence from the 1990-91 core. Following the Antarctic field season, a set of snow samples were obtained that had been collected by the International Trans-Antarctica Expedition. The analysis of these samples showed nitrate flux that correlates closely with known spatial distribution of electron precipitation in the south polar region. A new apparatus has been build for field analysis on a continuous basis of nitrate and conductivity in a melt derived from the vertical melting of ice cores.

Accessing SAFOD data products: Downhole measurements, physical samples and long-term monitoring

NASA Astrophysics Data System (ADS)

Weiland, C.; Zoback, M.; Hickman, S. H.; Ellsworth, W. L.

2005-12-01

Many different types of data were collected during SAFOD Phases 1 and 2 (2004-2005) as part of the National Science Foundation's EarthScope program as well as from the SAFOD Pilot Hole, drilled in 2002 and funded by the International Continental Drilling Program (ICDP). Both SAFOD and the SAFOD Pilot Hole are being conducted as a close collaboration between NSF, the U.S. Geological Survey and the ICDP. SAFOD data products include cuttings, core and fluid samples; borehole geophysical measurements; and strain, tilt, and seismic recordings from the multilevel SAFOD borehole monitoring instruments. As with all elements of EarthScope, these data (and samples) are openly available to members of the scientific and educational communities. This paper presents the acquisition, storage and distribution plan for SAFOD data products. Washed and unwashed drill cuttings and mud samples were collected during Phases 1 and 2, along with three spot cores at depths of 1.5, 2.5, and 3.1 km. A total of 52 side-wall cores were also collected in the open-hole interval between 2.5 and 3.1 km depth. The primary coring effort will occur during Phase 3 (2007), when we will continuously core up to four, 250-m-long multilaterals directly within and adjacent to the San Andreas Fault Zone. Drill cuttings, core, and fluid samples from all three Phases of SAFOD drilling are being curated under carefully controlled conditions at the Integrated Ocean Drilling Program (IODP) Gulf Coast Repository in College Station, Texas. Photos of all physical samples and a downloadable sample request form are available on the ICDP website (http://www.icdp-online.de/sites/sanandreas/index/index.html). A suite of downhole geophysical measurements was conducted during the first two Phases of SAFOD drilling, as well as during drilling of the SAFOD Pilot Hole. These data include density, resistivity, porosity, seismic and borehole image logs and are also available via the ICDP website. The SAFOD monitoring program includes fiber-optic strain, tilt, seismic and fluid-pressure recording instruments. Seismic data from the Pilot Hole array are now available in SEED format from the Northern California Earthquake Data Center (http://quake.geo.berkeley.edu/safod/). The strain and tilt instruments are still undergoing testing and quality assurance, and these data will be available through the same web site as soon as possible. Lastly, two terabytes of unprocessed (SEG-2 format) data from a two-week deployment of an 80-level seismic array during April/May 2005 by Paulsson Geophysical Services, Inc. are now available via the IRIS data center (http://www.iris.edu/data/data.htm). Drilling parameters include real-time descriptions of drill cuttings mineralogy, drilling mud properties, and mechanical data related to the drilling process and are available via the ICDP web site. Current status reports on SAFOD drilling, borehole measurements, sampling, and monitoring instrumentation will continue to be available from the EarthScope web site (http://www.earthscope.org).

Design of a multi-center immunophenotyping analysis of peripheral blood, sputum and bronchoalveolar lavage fluid in the Subpopulations and Intermediate Outcome Measures in COPD Study (SPIROMICS).

PubMed

Freeman, Christine M; Crudgington, Sean; Stolberg, Valerie R; Brown, Jeanette P; Sonstein, Joanne; Alexis, Neil E; Doerschuk, Claire M; Basta, Patricia V; Carretta, Elizabeth E; Couper, David J; Hastie, Annette T; Kaner, Robert J; O'Neal, Wanda K; Paine, Robert; Rennard, Stephen I; Shimbo, Daichi; Woodruff, Prescott G; Zeidler, Michelle; Curtis, Jeffrey L

2015-01-27

Subpopulations and Intermediate Outcomes in COPD Study (SPIROMICS) is a multi-center longitudinal, observational study to identify novel phenotypes and biomarkers of chronic obstructive pulmonary disease (COPD). In a subset of 300 subjects enrolled at six clinical centers, we are performing flow cytometric analyses of leukocytes from induced sputum, bronchoalveolar lavage (BAL) and peripheral blood. To minimize several sources of variability, we use a "just-in-time" design that permits immediate staining without pre-fixation of samples, followed by centralized analysis on a single instrument. The Immunophenotyping Core prepares 12-color antibody panels, which are shipped to the six Clinical Centers shortly before study visits. Sputum induction occurs at least two weeks before a bronchoscopy visit, at which time peripheral blood and bronchoalveolar lavage are collected. Immunostaining is performed at each clinical site on the day that the samples are collected. Samples are fixed and express shipped to the Immunophenotyping Core for data acquisition on a single modified LSR II flow cytometer. Results are analyzed using FACS Diva and FloJo software and cross-checked by Core scientists who are blinded to subject data. Thus far, a total of 152 sputum samples and 117 samples of blood and BAL have been returned to the Immunophenotyping Core. Initial quality checks indicate useable data from 126 sputum samples (83%), 106 blood samples (91%) and 91 BAL samples (78%). In all three sample types, we are able to identify and characterize the activation state or subset of multiple leukocyte cell populations (including CD4+ and CD8+ T cells, B cells, monocytes, macrophages, neutrophils and eosinophils), thereby demonstrating the validity of the antibody panel. Our study design, which relies on bi-directional communication between clinical centers and the Core according to a pre-specified protocol, appears to reduce several sources of variability often seen in flow cytometric studies involving multiple clinical sites. Because leukocytes contribute to lung pathology in COPD, these analyses will help achieve SPIROMICS aims of identifying subgroups of patients with specific COPD phenotypes. Future analyses will correlate cell-surface markers on a given cell type with smoking history, spirometry, airway measurements, and other parameters. This study was registered with ClinicalTrials.gov as NCT01969344 .

Fine structure of the late Eocene Ir anomaly in marine sediments

NASA Technical Reports Server (NTRS)

Asaro, F.

1991-01-01

The Late Eocene Ir abundance profile in deep sea cores from Ocean Drilling Program Leg 113 Hole 689B on the Maude Rise off of Antarctica was studied with 410 samples continuously in 10 cm increments and measured with the Iridium Coincidence (ICS). The ICS was subsequently modified to measure 13 other elements simultaneously with the Ir. The abundance profiles of these elements were then determined in the Late Eocene Massignano section in central Italy with 250 samples (encompassing roughly 2 million years of accumulation) which were collected about every 5 cm in about 2 cm increments. These studies augmented a previous one (which included many elements) of deep sea cores from Deep Sea Drilling Project Site 592 on the Lord Howe Rise in the Tasman Sea between Australia and New Zealand. In the latter study, 50 samples (encompassing roughly 0.7 million years of accumulation) were collected continuously in 10 cm increments. The results from these studies are discussed.

The STRATAFORM Project: U.S. Geological Survey geotechnical studies

USGS Publications Warehouse

Minasian, Diane L.; Lee, Homa J.; Locat, Jaques; Orzech, Kevin M.; Martz, Gregory R.; Israel, Kenneth

2001-01-01

This report presents physical property logs of core samples from an offshore area near Eureka, CA. The cores were obtained as part of the STRATAFORM Program (Nittrouer and Kravitz, 1995, 1996), a study investigating how present sedimentation and sediment transport processes influence long-term stratigraphic sequences preserved in the geologic record. The core samples were collected during four separate research cruises to the northern California study area, and data shown in the logs of the cores were collected using a multi-sensor whole core logger. The physical properties collected are useful in identifying stratigraphic units, ground-truthing acoustic imagery and sub-bottom profiles, and in understanding mass movement processes. STRATA FORmation on Margins was initiated in 1994 by the Office of Naval Research, Marine Geology and Geophysics Department as a coordinated multi-investigator study of continental-margin sediment transport processes and stratigraphy (Nittrouer and Kravitz, 1996). The program is investigating the stratigraphic signature of the shelf and slope parts of the continental margins, and is designed to provide a better understanding of the sedimentary record and a better prediction of strata. Specifically, the goals of the STRATAFORM Program are to (Nittrouer and Kravitz, 1995): - determine the geological relevance of short-term physical processes that erode, transport, and deposit particles and those processes that subsequently rework the seabed over time scales - improve capabilities for identifying the processes that form the strata observed within the upper ~100 m of the seabed commonly representing 104-106 years of sedimentation. - synthesize this knowledge and bridge the gap between time scales of sedimentary processes and those of sequence stratigraphy. The STRATAFORM Program is divided into studies of the continental shelf and the continental slope; the geotechnical group within the U.S. Geological Survey provides support to both parts of the project.

SedCT: MATLAB™ tools for standardized and quantitative processing of sediment core computed tomography (CT) data collected using a medical CT scanner

NASA Astrophysics Data System (ADS)

Reilly, B. T.; Stoner, J. S.; Wiest, J.

2017-08-01

Computed tomography (CT) of sediment cores allows for high-resolution images, three-dimensional volumes, and down core profiles. These quantitative data are generated through the attenuation of X-rays, which are sensitive to sediment density and atomic number, and are stored in pixels as relative gray scale values or Hounsfield units (HU). We present a suite of MATLAB™ tools specifically designed for routine sediment core analysis as a means to standardize and better quantify the products of CT data collected on medical CT scanners. SedCT uses a graphical interface to process Digital Imaging and Communications in Medicine (DICOM) files, stitch overlapping scanned intervals, and create down core HU profiles in a manner robust to normal coring imperfections. Utilizing a random sampling technique, SedCT reduces data size and allows for quick processing on typical laptop computers. SedCTimage uses a graphical interface to create quality tiff files of CT slices that are scaled to a user-defined HU range, preserving the quantitative nature of CT images and easily allowing for comparison between sediment cores with different HU means and variance. These tools are presented along with examples from lacustrine and marine sediment cores to highlight the robustness and quantitative nature of this method.

Adaptive Sampling-Based Information Collection for Wireless Body Area Networks.

PubMed

Xu, Xiaobin; Zhao, Fang; Wang, Wendong; Tian, Hui

2016-08-31

To collect important health information, WBAN applications typically sense data at a high frequency. However, limited by the quality of wireless link, the uploading of sensed data has an upper frequency. To reduce upload frequency, most of the existing WBAN data collection approaches collect data with a tolerable error. These approaches can guarantee precision of the collected data, but they are not able to ensure that the upload frequency is within the upper frequency. Some traditional sampling based approaches can control upload frequency directly, however, they usually have a high loss of information. Since the core task of WBAN applications is to collect health information, this paper aims to collect optimized information under the limitation of upload frequency. The importance of sensed data is defined according to information theory for the first time. Information-aware adaptive sampling is proposed to collect uniformly distributed data. Then we propose Adaptive Sampling-based Information Collection (ASIC) which consists of two algorithms. An adaptive sampling probability algorithm is proposed to compute sampling probabilities of different sensed values. A multiple uniform sampling algorithm provides uniform samplings for values in different intervals. Experiments based on a real dataset show that the proposed approach has higher performance in terms of data coverage and information quantity. The parameter analysis shows the optimized parameter settings and the discussion shows the underlying reason of high performance in the proposed approach.

Adaptive Sampling-Based Information Collection for Wireless Body Area Networks

PubMed Central

Xu, Xiaobin; Zhao, Fang; Wang, Wendong; Tian, Hui

2016-01-01

To collect important health information, WBAN applications typically sense data at a high frequency. However, limited by the quality of wireless link, the uploading of sensed data has an upper frequency. To reduce upload frequency, most of the existing WBAN data collection approaches collect data with a tolerable error. These approaches can guarantee precision of the collected data, but they are not able to ensure that the upload frequency is within the upper frequency. Some traditional sampling based approaches can control upload frequency directly, however, they usually have a high loss of information. Since the core task of WBAN applications is to collect health information, this paper aims to collect optimized information under the limitation of upload frequency. The importance of sensed data is defined according to information theory for the first time. Information-aware adaptive sampling is proposed to collect uniformly distributed data. Then we propose Adaptive Sampling-based Information Collection (ASIC) which consists of two algorithms. An adaptive sampling probability algorithm is proposed to compute sampling probabilities of different sensed values. A multiple uniform sampling algorithm provides uniform samplings for values in different intervals. Experiments based on a real dataset show that the proposed approach has higher performance in terms of data coverage and information quantity. The parameter analysis shows the optimized parameter settings and the discussion shows the underlying reason of high performance in the proposed approach. PMID:27589758

Characterization of Sugar Concentration Among Edible Podded Accessions in the USDA Phaseolus vulgaris Germplasm Collection

USDA-ARS?s Scientific Manuscript database

The objective is to gain knowledge regarding variation in sugar and flavor content among a sample of dry bean and green pod-type accessions from the USDA Phaseolus Germplasm Core Collection, Pullman, WA. The results could be used to market product quality and offer unique opportunities to expand ma...

Gas and porewater composition of shallow sediments in the Tuaheni Basin, New Zealand

NASA Astrophysics Data System (ADS)

Rose, P. S.; Coffin, R. B.; Yoza, B.; Boyd, T. J.; Crutchley, G. J.; Mountjoy, J. J.; Pecher, I. A.

2015-12-01

Seismic profiles collected during previous investigations on the Hikurangi Margin, off the North Island, New Zealand showed bottom simulating reflectors (BSRs), which are generally indicative of the presence of free gas. Further, double BSRs clearly identified in the Tuaheni Basin were hypothesized to result from differences in gas composition and fluid migration. During a cruise on the RV Tangaroa in June 2015 (TAN 1508) additional seismic data were collected and used to identify piston coring targets. Coring locations were selected to sample around BSR pinch-outs and possible fluid migration pathways to determine gas composition and flux. Shallow sediments collected in June 2015 in the Tuaheni Basin had relatively low sediment headspace CH4 concentrations (6000ppm. Higher molecular weight alkanes were not detected in the sediment headspace gas at any location. Sediment porewater sulfate, chloride and sulfide concentrations will be presented with CH4concentration profiles and geophysical data.

Pockmarks off Big Sur, California

USGS Publications Warehouse

Paull, C.; Ussler, W.; Maher, N.; Greene, H. Gary; Rehder, G.; Lorenson, T.; Lee, H.

2002-01-01

A pockmark field was discovered during EM-300 multi-beam bathymetric surveys on the lower continental slope off the Big Sur coast of California. The field contains ??? 1500 pockmarks which are between 130 and 260 m in diameter, and typically are 8-12 m deep located within a 560 km2 area. To investigate the origin of these features, piston cores were collected from both the interior and the flanks of the pockmarks, and remotely operated vehicle observation (ROV) video and sampling transects were conducted which passed through 19 of the pockmarks. The water column within and above the pockmarks was sampled for methane concentration. Piston cores and ROV collected push cores show that the pockmark field is composed of monotonous fine silts and clays and the cores within the pockmarks are indistinguishable from those outside the pockmarks. No evidence for either sediment winnowing or diagenetic alteration suggestive of fluid venting was obtained. 14C measurements of the organic carbon in the sediments indicate continuous sedimentation throughout the time resolution of the radiocarbon technique ( ??? 45000 yr BP), with a sedimentation rate of ??? 10 cm per 1000 yr both within and between the pockmarks. Concentrations of methane, dissolved inorganic carbon, sulfate, chloride, and ammonium in pore water extracted from within the cores are generally similar in composition to seawater and show little change with depth, suggesting low biogeochemical activity. These pore water chemical gradients indicate that neither significant accumulations of gas are likely to exist in the shallow subsurface ( ??? 100 m) nor is active fluid advection occurring within the sampled sediments. Taken together the data indicate that these pockmarks are more than 45000 yr old, are presently inactive, and contain no indications of earlier fluid or gas venting events. ?? 2002 Elsevier Science B.V. All rights reserved.

Evaluation of dredged material proposed for ocean disposal from Hudson River, New York

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gardiner, W.W.; Barrows, E.S.; Antrim, L.D.

1996-09-01

The Hudson River (Federal Project No. 41) was one of seven waterways that the U.S. Army Corps of Engineers-New York District (USACE-NYD) requested the Battelle Marine Sciences Laboratory (MSL) to sample and evaluate for dredging and disposal in March 1994. Sediment samples were collected from the Hudson River. Tests and analyses were conducted on Hudson River sediment core samples. The evaluation of proposed dredged material from the Hudson River included bulk sediment chemical analyses, chemical analyses of site water and elutriate, water-column and benthic acute toxicity tests, and bioaccumulation studies. Individual sediment core samples collected from Hudson River were analyzedmore » for grain size, moisture content, and total organic carbon (TOC). A composite sediment sample, representing the entire area proposed for dredging, was analyzed for bulk density, specific gravity, metals, chlorinated pesticides, polychlorinated biphenyl (PCB) congeners, polynuclear aromatic hydrocarbons (PAH), and 1,4-dichlorobenzene. Site water and elutriate water, prepared from the suspended-particulate phase (SPP) of Hudson River sediment, were analyzed for metals, pesticides, and PCBS. Water-column or SPP toxicity tests were performed with three species. Benthic acute toxicity tests were performed. Bioaccumulation tests were also conducted.« less

Trace element distribution in the water and sediments of certain storage lakes from the Jijia catchment, (Romania)

NASA Astrophysics Data System (ADS)

Dughila, A.; Iancu, O. G.; Romanescu, G. T.

2012-04-01

The present study aims at investigating the concentrations and distribution levels of a series of trace elements in water and sediment samples collected from six storage lakes located in the Jijia catchment - NE of Romania. The lakes are multi-purpose water reservoirs, three of them being mainly used as a source of municipal drinking water, or for fishing, irrigation for the farms in the area, protection against floods and the regulation of river flows. By contrast, agricultural wastes, fertilizers, raw sewage effluents and road runoff constitute the predominant anthropogenic sources, which supply the lakes in question with Cd, Cu, Pb and Zn. The present study was conducted on a series of 63 sediment samples and 18 water samples, collected from the same locations, in order to establish the distribution levels of certain trace elements from the water through sediments. Sediment cores were collected from two sections across each lake by means of a motor boat, using a system that consists of a graduated sampling tube (0.9 m in length and 72.5 mm in diameter) made of Plexiglas (Eijkelkamp sample tube guide). Prior to the analyses, the samples were air-dried, ground and homogenized using an agate mortar, oven-dried at 50 °C for 6 days and then sieved through 63 µm sieves. The sediment and water samples were subjected to a digestion technique with concentrated nitric acid using a microwave oven (Berghof type), and analyzed for the following elements: Pb, Zn, Cu, Cd, Cr and Ni. The total concentration of the elements was measured through atomic absorption spectrometry (AAS) with an RSD of < 10 % from solutions. The vertical distribution of most elements in the cores examined could be characterized as relatively uniform, with higher concentrations for those collected from the lakes which are more influenced by anthropogenic factors, compared to those situated in forested areas. The lake-water quality characteristics were below the recommended drinking water standards imposed by the current legislation (MMGA Ord. No. 161/16.02.2006 - Normative regarding the classification of surface waters in order to establish the ecological status of water bodies, which combines European and Romanian provisions), with the exception of copper (with very high concentrations in all the water samples), lead and cadmium. Keywords: AAS, Jijia catchment (Romania), lake water, sediment core, trace elements

Tree Ring Chronology Indexes and Reconstructions of Precipitation in Central Iowa, USA (1984) (NDP-002)

DOE Data Explorer

Blasing, T. J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Duvick, D. N. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Building Technologies Research and Integration Center (BTRIC)

2012-01-01

Tree core samples (4 mm in diameter) were extracted from the trunks of white oak (Quercus alba) at three sites in central Iowa (Duvick Back Woods, Ledges State Park, and Pammel). At least 60 trees were sampled at each site, and at least two cores were taken from each tree. The growth rings of each core were dated by calendar year and measured; the measurements were then transformed into dimensionless ring-width indices and correlated with annual precipitation. Data were collected for the years 1680 through 1979. Each tree ring was characterized by the site, year, tree-ring-width index, number of core samples, decade year, and the annual reconstructed precipitation estimate. These data have more than 50% of their variance in common with the known annual statewide average precipitation for Iowa and serve as useful indicators of the precipitation and drought history of the region for the past 300 years. The data are in two files: tree-ring-chronology data (8 kB) and the annual reconstructed precipitation data for central Iowa (2 kB).

The subsurface geology of Río Tinto: material examined during a simulated Mars drilling mission for the Mars Astrobiology Research and Technology Experiment (MARTE).

PubMed

Prieto-Ballesteros, Olga; Martínez-Frías, Jesús; Schutt, John; Sutter, Brad; Heldmann, Jennifer L; Bell, Mary Sue; Battler, Melissa; Cannon, Howard; Gómez-Elvira, Javier; Stoker, Carol R

2008-10-01

The 2005 Mars Astrobiology Research and Technology Experiment (MARTE) project conducted a simulated 1-month Mars drilling mission in the Río Tinto district, Spain. Dry robotic drilling, core sampling, and biological and geological analytical technologies were collectively tested for the first time for potential use on Mars. Drilling and subsurface sampling and analytical technologies are being explored for Mars because the subsurface is the most likely place to find life on Mars. The objectives of this work are to describe drilling, sampling, and analytical procedures; present the geological analysis of core and borehole material; and examine lessons learned from the drilling simulation. Drilling occurred at an undisclosed location, causing the science team to rely only on mission data for geological and biological interpretations. Core and borehole imaging was used for micromorphological analysis of rock, targeting rock for biological analysis, and making decisions regarding the next day's drilling operations. Drilling reached 606 cm depth into poorly consolidated gossan that allowed only 35% of core recovery and contributed to borehole wall failure during drilling. Core material containing any indication of biology was sampled and analyzed in more detail for its confirmation. Despite the poorly consolidated nature of the subsurface gossan, dry drilling was able to retrieve useful core material for geological and biological analysis. Lessons learned from this drilling simulation can guide the development of dry drilling and subsurface geological and biological analytical technologies for future Mars drilling missions.

The Subsurface Geology of Río Tinto: Material Examined During a Simulated Mars Drilling Mission for the Mars Astrobiology Research and Technology Experiment (MARTE)

NASA Astrophysics Data System (ADS)

Prieto-Ballesteros, Olga; Martínez-Frías, Jesús; Schutt, John; Sutter, Brad; Heldmann, Jennifer L.; Bell Johnson, Mary Sue; Battler, Melissa; Cannon, Howard; Gómez-Elvira, Javier; Stoker, Carol R.

2008-10-01

The 2005 Mars Astrobiology Research and Technology Experiment (MARTE) project conducted a simulated 1-month Mars drilling mission in the Río Tinto district, Spain. Dry robotic drilling, core sampling, and biological and geological analytical technologies were collectively tested for the first time for potential use on Mars. Drilling and subsurface sampling and analytical technologies are being explored for Mars because the subsurface is the most likely place to find life on Mars. The objectives of this work are to describe drilling, sampling, and analytical procedures; present the geological analysis of core and borehole material; and examine lessons learned from the drilling simulation. Drilling occurred at an undis closed location, causing the science team to rely only on mission data for geological and biological interpretations. Core and borehole imaging was used for micromorphological analysis of rock, targeting rock for biological analysis, and making decisions regarding the next day's drilling operations. Drilling reached 606 cm depth into poorly consolidated gossan that allowed only 35% of core recovery and contributed to borehole wall failure during drilling. Core material containing any indication of biology was sampled and analyzed in more detail for its confirmation. Despite the poorly consolidated nature of the subsurface gossan, dry drilling was able to retrieve useful core material for geological and biological analysis. Lessons learned from this drilling simulation can guide the development of dry drilling and subsurface geological and biological analytical technologies for future Mars drilling missions.

A Mars Sample Return Sample Handling System

NASA Technical Reports Server (NTRS)

Wilson, David; Stroker, Carol

2013-01-01

We present a sample handling system, a subsystem of the proposed Dragon landed Mars Sample Return (MSR) mission [1], that can return to Earth orbit a significant mass of frozen Mars samples potentially consisting of: rock cores, subsurface drilled rock and ice cuttings, pebble sized rocks, and soil scoops. The sample collection, storage, retrieval and packaging assumptions and concepts in this study are applicable for the NASA's MPPG MSR mission architecture options [2]. Our study assumes a predecessor rover mission collects samples for return to Earth to address questions on: past life, climate change, water history, age dating, understanding Mars interior evolution [3], and, human safety and in-situ resource utilization. Hence the rover will have "integrated priorities for rock sampling" [3] that cover collection of subaqueous or hydrothermal sediments, low-temperature fluidaltered rocks, unaltered igneous rocks, regolith and atmosphere samples. Samples could include: drilled rock cores, alluvial and fluvial deposits, subsurface ice and soils, clays, sulfates, salts including perchlorates, aeolian deposits, and concretions. Thus samples will have a broad range of bulk densities, and require for Earth based analysis where practical: in-situ characterization, management of degradation such as perchlorate deliquescence and volatile release, and contamination management. We propose to adopt a sample container with a set of cups each with a sample from a specific location. We considered two sample cups sizes: (1) a small cup sized for samples matching those submitted to in-situ characterization instruments, and, (2) a larger cup for 100 mm rock cores [4] and pebble sized rocks, thus providing diverse samples and optimizing the MSR sample mass payload fraction for a given payload volume. We minimize sample degradation by keeping them frozen in the MSR payload sample canister using Peltier chip cooling. The cups are sealed by interference fitted heat activated memory alloy caps [5] if the heating does not affect the sample, or by crimping caps similar to bottle capping. We prefer cap sealing surfaces be external to the cup rim to prevent sample dust inside the cups interfering with sealing, or, contamination of the sample by Teflon seal elements (if adopted). Finally the sample collection rover, or a Fetch rover, selects cups with best choice samples and loads them into a sample tray, before delivering it to the Earth Return Vehicle (ERV) in the MSR Dragon capsule as described in [1] (Fig 1). This ensures best use of the MSR payload mass allowance. A 3 meter long jointed robot arm is extended from the Dragon capsule's crew hatch, retrieves the sample tray and inserts it into the sample canister payload located on the ERV stage. The robot arm has capacity to obtain grab samples in the event of a rover failure. The sample canister has a robot arm capture casting to enable capture by crewed or robot spacecraft when it returns to Earth orbit

Arrival and expansion of the invasive foraminifera Trochammina hadai Uchio in Padilla Bay, Washington

USGS Publications Warehouse

McGann, Mary; Grossman, Eric E.; Takesue, Renee K.; Penttila, Dan; Walsh, John P.; Corbett, Reide

2012-01-01

Trochammina hadai Uchio, a benthic foraminifera native to Japanese estuaries, was first identified as an invasive in 1995 in San Francisco Bay and later in 16 other west coast estuaries. To investigate the timing of the arrival and expansion of this invasive species in Padilla Bay, Washington, we analyzed the distribution of foraminifera in two surface samples collected in 1971, in nine surface samples collected by Scott in 1972–1973, as well as in two cores (Padilla Flats 3 and Padilla V1/V2) obtained in 2004. Trochanimina hadai, originally identified as the native Trochammina pacifica Cushman in several early foraminiferal studies, dominates the assemblage of most of the surface samples. In the Padilla V1/V2 and Padilla Flats 3 cores, the species' abundance follows a pattern of absence, first appearance, rapid expansion commonly seen shortly after the arrival of a successful biological invasion, setback, and second expansion. Using Q-mode cluster analysis, pre-expansion and expansion assemblages were identified. Pb-210 dating of these cores proved unsuccessful. However, based on T. hadai's first appearance occurring stratigraphically well above sedimentological changes in the cores that reflect deposition of sediments in the bay due to previous diversions of the Skagit River, and its dominance in the early 1970s surface samples, we conclude that the species arrived in Padilla Bay somewhere between the late 1800s and 1971. Trochammina hadai may have been introduced into the bay in the 1930s when oyster culturing began there or, at a minimum, ten years prior to its appearance in San Francisco Bay.

The AVRDC - The World Vegetable Center mungbean (Vigna radiata) core and mini core collections.

PubMed

Schafleitner, Roland; Nair, Ramakrishnan Madhavan; Rathore, Abhishek; Wang, Yen-wei; Lin, Chen-yu; Chu, Shu-hui; Lin, Pin-yun; Chang, Jian-Cheng; Ebert, Andreas W

2015-04-29

Large ex situ germplasm collections generally harbor a wide range of crop diversity. AVRDC--The World Vegetable Center is holding in trust the world's second largest mungbean (Vigna radiata) germplasm collection with more than 6,700 accessions. Screening large collections for traits of interest is laborious and expensive. To enhance the access of breeders to the diversity of the crop, mungbean core and mini core collections have been established. The core collection of 1,481 entries has been built by random selection of 20% of the accessions after geographical stratification and subsequent cluster analysis of eight phenotypic descriptors in the whole collection. Summary statistics, especially the low differences of means, equal variance of the traits in both the whole and core collection and the visual inspection of quantile-quantile plots comparing the variation of phenotypic traits present in both collections indicated that the core collection well represented the pattern of diversity of the whole collection. The core collection was genotyped with 20 simple sequence repeat markers and a mini core set of 289 accessions was selected, which depicted the allele and genotype diversity of the core collection. The mungbean core and mini core collections plus their phenotypic and genotypic data are available for distribution to breeders. It is expected that these collections will enhance the access to biodiverse mungbean germplasm for breeding.

Evaluating genetic diversity and constructing core collections of Chinese Lentinula edodes cultivars using ISSR and SRAP markers.

PubMed

Liu, Jun; Wang, Zhuo-Ren; Li, Chuang; Bian, Yin-Bing; Xiao, Yang

2015-06-01

Genetic diversity among 89 Chinese Lentinula edodes cultivars was analyzed by inter-simple sequence repeat (ISSR) and sequence-related amplified polymorphism (SRAP) markers. A 123 out of 126 ISSR loci (97.62%) and 108 out of 129 SRAP loci (83.73%) were polymorphic between two or more strains. A dendrogram constructed by cluster analysis based on the ISSR and SRAP markers separated the L. edodes strains into two major groups, of which group B was further divided into five subgroups. Clustering results also showed a positive correlation with the main agronomic traits of the strains, and that strains with similar traits clustered together into the same groups or subgroups in most cases. The average coefficient of pairwise genetic similarity was 0.820 (range: 0.576-0.988). Compared to the wild strains, Chinese L. edodes cultivars indicated a lower level of genetic diversity. Two preliminary core collections of L. edodes, Core1 and Core2, were established based on the ISSR and SRAP data, respectively. Core1 was constructed by the advanced M (maximization) strategy using the PowerCore version 1.0 software and contained 21 strains, whereas Core2 was created by the allele preferred sampling strategy using the cluster method and contained 18 strains. Both core collections were highly representative of the genetic diversity of the original germplasm, as confirmed by the values of Na (observed number of alleles), Ne (effective number of alleles), H (Nei's gene diversity) and I (Shannon's information index), as well as results of principal coordinate analysis. The loci retention ratio of Core1 (99.61%) was higher than that of Core2 (97.65%). Moreover, Core1 contained strains with more types of agronomic traits than those in Core2. This study builds the basis for further effective protection, management and use of L. edodes germplasm resource. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

A new method of snowmelt sampling for water stable isotopes

USGS Publications Warehouse

Penna, D.; Ahmad, M.; Birks, S. J.; Bouchaou, L.; Brencic, M.; Butt, S.; Holko, L.; Jeelani, G.; Martinez, D. E.; Melikadze, G.; Shanley, J.B.; Sokratov, S. A.; Stadnyk, T.; Sugimoto, A.; Vreca, P.

2014-01-01

We modified a passive capillary sampler (PCS) to collect snowmelt water for isotopic analysis. Past applications of PCSs have been to sample soil water, but the novel aspect of this study was the placement of the PCSs at the ground-snowpack interface to collect snowmelt. We deployed arrays of PCSs at 11 sites in ten partner countries on five continents representing a range of climate and snow cover worldwide. The PCS reliably collected snowmelt at all sites and caused negligible evaporative fractionation effects in the samples. PCS is low-cost, easy to install, and collects a representative integrated snowmelt sample throughout the melt season or at the melt event scale. Unlike snow cores, the PCS collects the water that would actually infiltrate the soil; thus, its isotopic composition is appropriate to use for tracing snowmelt water through the hydrologic cycle. The purpose of this Briefing is to show the potential advantages of PCSs and recommend guidelines for constructing and installing them based on our preliminary results from two snowmelt seasons.

We Did This Before - The Lunar Receiving Laboratory (1969-1972)

NASA Technical Reports Server (NTRS)

Allen, Carlton; Allton, Judith

2011-01-01

The six Apollo missions to the lunar surface, between 1969 and 1972, returned 2,196 individual rock, soil and core samples, with a total mass of 381.69 kg. The astronauts selected samples, photographed the rocks and soils prior to collection, packaged them in uniquely identified containers, and transported them to the Lunar Module

University of TX Bureau of Economic Geology's Core Research Centers: The Time is Right for Registering Physical Samples and Assigning IGSN's - Workflows, Stumbling Blocks, and Successes.

NASA Astrophysics Data System (ADS)

Averett, A.; DeJarnett, B. B.

2016-12-01

The University Of Texas Bureau Of Economic Geology (BEG) serves as the geological survey for Texas and operates three geological sample repositories that house well over 2 million boxes of geological samples (cores and cuttings) and an abundant amount of geoscience data (geophysical logs, thin sections, geochemical analyses, etc.). Material is accessible and searchable online, and it is publically available to the geological community for research and education. Patrons access information about our collection by using our online core and log database (SQL format). BEG is currently undertaking a large project to: 1) improve the internal accuracy of metadata associated with the collection; 2) enhance the capabilities of the database for both BEG curators and researchers as well as our external patrons; and 3) ensure easy and efficient navigation for patrons through our online portal. As BEG undertakes this project, BEG is in the early stages of planning to export the metadata for its collection into SESAR (System for Earth Sample Registration) and have IGSN's (International GeoSample Numbers) assigned to its samples. Education regarding the value of IGSN's and an external registry (SESAR) has been crucial to receiving management support for the project because the concept and potential benefits of registering samples in a registry outside of the institution were not well-known prior to this project. Potential benefits such as increases in discoverability, repository recognition in publications, and interoperability were presented. The project was well-received by management, and BEG fully supports the effort to register our physical samples with SESAR. Since BEG is only in the initial phase of this project, any stumbling blocks, workflow issues, successes/failures, etc. can only be predicted at this point, but by mid-December, BEG expects to have several concrete issues to present in the session. Currently, our most pressing issue involves establishing the most efficient workflow for exporting of large amounts of metadata in a format that SESAR can easily ingest, and how this can be best accomplished with very few BEG staff assigned to the project.

Investigation of ethylene dibromide (EDB) in ground water in Seminole County, Georgia

USGS Publications Warehouse

McConnell, James B.; Hicks, D.W.; Lowe, L. E.; Cohen, S.Z.; Jovanovich, A.P.

1984-01-01

An investigation of ground water in Seminole County, Georgia, for ethylene dibromide (EDB) was conducted in August 1983 by the U.S. Geological Survey in cooperation with the Exposure Assessment Branch of the U.S. Environmental Protection Agency. The purpose of the investigation was to determine whether EDB, which was previously detected in ground-water samples from four neighboring wells, was localized in the vicinity of the wells or was more widespread in the ground-water system. EDB was detected in 6 of 19 wells sampled. Concentrations ranged from 0.03 to 11.8 micrograms per liter. Five of the six samples that contained EDB were collected from irrigation wells, and one was collected from a domestic well. Concentrations of 4.5 and 11.8 micrograms per liter were found in two irrigation wells located near Buck Hole, a sinkhole in a swampy depression in central Seminole County. EDB was not detected in samples from the remaining 10 irrigation and 3 domestic wells and the surface-water site (detection level less than 0.01 microgram per liter). Nine core samples were collected from a borehole near one of the irrigation wells that had high EDB concentrations. EDB was found in a core sample near the surface and in samples from depths of 24 to 25, 34 to 35, and 39 to 40 feet in the residuum. EDB concentrations in the core samples ranged from 0.06 to 2.4 micrograms per kilogram. EDB in the aquifer was found in a 4-square-mile area of the county in the vicinity of Buck Hole. EDB application information and the local hydrogeology indicate that EDB contamination in ground water in Seminole County probably is due to soil fumigation with EDB. Apparently, EDB moves downward through the residuum and, through undetermined pathways, enters the aquifer. However, because the high concentration of EDB in the aquifer seems to be localized in the Buck Hole area, the possibility of contamination from an EDB fumigant spill cannot be disregarded at this time.

Genetic diversity and structure of core collection of winter mushroom (Flammulina velutipes) developed by genomic SSR markers.

PubMed

Liu, Xiao Bin; Li, Jing; Yang, Zhu L

2018-01-01

A core collection is a subset of an entire collection that represents as much of the genetic diversity of the entire collection as possible. The establishment of a core collection for crops is practical for efficient management and use of germplasm. However, the establishment of a core collection of mushrooms is still in its infancy, and no established core collection of the economically important species Flammulina velutipes has been reported. We established the first core collection of F. velutipes , containing 32 strains based on 81 genetically different F. veltuipes strains. The allele retention proportion of the core collection for the entire collection was 100%. Moreover, the genetic diversity parameters (the effective number of alleles, Nei's expected heterozygosity, the number of observed heterozygosity, and Shannon's information index) of the core collection showed no significant differences from the entire collection ( p  > 0.01). Thus, the core collection is representative of the genetic diversity of the entire collection. Genetic structure analyses of the core collection revealed that the 32 strains could be clustered into 6 groups, among which groups 1 to 3 were cultivars and groups 4 to 6 were wild strains. The wild strains from different locations harbor their own specific alleles, and were clustered stringently in accordance with their geographic origins. Genetic diversity analyses of the core collection revealed that the wild strains possessed greater genetic diversity than the cultivars. We established the first core collection of F. velutipes in China, which is an important platform for efficient breeding of this mushroom in the future. In addition, the wild strains in the core collection possess favorable agronomic characters and produce unique bioactive compounds, adding value to the platform. More attention should be paid to wild strains in further strain breeding.

Active AirCore Sampling: Constraining Point Sources of Methane and Other Gases with Fixed Wing Unmanned Aerial Systems

NASA Astrophysics Data System (ADS)

Bent, J. D.; Sweeney, C.; Tans, P. P.; Newberger, T.; Higgs, J. A.; Wolter, S.

2017-12-01

Accurate estimates of point source gas emissions are essential for reconciling top-down and bottom-up greenhouse gas measurements, but sampling such sources is challenging. Remote sensing methods are limited by resolution and cloud cover; aircraft methods are limited by air traffic control clearances, and the need to properly determine boundary layer height. A new sampling approach leverages the ability of unmanned aerial systems (UAS) to measure all the way to the surface near the source of emissions, improving sample resolution, and reducing the need to characterize a wide downstream swath, or measure to the full height of the planetary boundary layer (PBL). The "Active-AirCore" sampler, currently under development, will fly on a fixed wing UAS in Class G airspace, spiraling from the surface to 1200 ft AGL around point sources such as leaking oil wells to measure methane, carbon dioxide and carbon monoxide. The sampler collects a 100-meter long sample "core" of air in an 1/8" passivated stainless steel tube. This "core" is run on a high-precision instrument shortly after the UAS is recovered. Sample values are mapped to a specific geographic location by cross-referencing GPS and flow/pressure metadata, and fluxes are quantified by applying Gauss's theorem to the data, mapped onto the spatial "cylinder" circumscribed by the UAS. The AirCore-Active builds off the sampling ability and analytical approach of the related AirCore sampler, which profiles the atmosphere passively using a balloon launch platform, but will add an active pumping capability needed for near-surface horizontal sampling applications. Here, we show design elements, laboratory and field test results for methane, describe the overall goals of the mission, and discuss how the platform can be adapted, with minimal effort, to measure other gas species.

Status of the core and the mini core collections for the U.S. gemrplasm collection of peanut

USDA-ARS?s Scientific Manuscript database

To maximize their usefulness, core and mini core collections should be dynamic. The peanut core collection was developed in the early 1990's, and the mini core was developed in the late 1990's. Research has shown that these collections can be used to improve the efficiency and effectiveness of ide...

The Impact of Hypoxia on Foraminifera in the Northern Mississippi Bight

NASA Astrophysics Data System (ADS)

Brunner, C. A.; Kuykendall, J. I.; Hartmann, V. A.; Howden, S. D.

2008-12-01

Hypoxia was measured in bottom water of the northern Mississippi Bight in the summers of 2006 and 2008. In 2006, the area covered approximately 200 km2, extending along the 10-m isobath from Horn Island to the eastern end of Petit Bois Island and southward to the USM buoy near the 20-m isobath. In 2008, the area increased, extending in addition southward along the 10-m isobath seaward of the Chandeleur Islands. Hypoxia was also measured at a site near the USM buoy in August 2004 and at nearby FH-2 in August 2003, and anecdotal reports have suggested hypoxia in August of other years. Because hypoxia in the Mississippi bight is much smaller and appears shorter than seasonal hypoxia in the Louisiana bight, we wanted to assess whether or not these events affect the benthic meiofauna, in this instance, using benthic foraminifers. Benthic foraminifers were collected in box and diver cores within the area of known hypoxia in June when bottom water was well oxygenated and in July and August when conditions were hypoxic. For comparison, cores were also collected east of the area of known hypoxia. All cores were collected from 20 m water depth, and each sample consisted of two replicate cores. The cores were sliced into 1-cm slabs from the top to 5 cm depth, stained with rose Bengal, and counted for live specimens. The assemblage of living foraminifers in normally oxygenated conditions consisted of ten common species, in addition to at least ten rare species. Only 24% of the specimens were hypoxia-tolerant species. In contrast, two hypoxia-tolerant species, Nonionella basiloba and Bolivina lowmani, comprising 80-90% of the fauna, dominated the live assemblage during the hypoxic periods. In addition, the biomass of the hypoxic samples was four times that of the control samples, though habitation depths were not significantly different. Interestingly, at one site sampled in June 2005, a turbid layer (possibly a fluid mud) had moved into the area covering the top two centimeters of the seafloor. The fluid-filled mud was dominated by the same hypoxia- tolerant species, Nonionella basiloba with significant numbers of Bolivina lowmani. We conclude based on these preliminary results that the meiofauna-represented by benthic foraminifers-responds to the August hypoxia with dominance of hypoxia-tolerant species.

Characterizing Mobile/Less-Mobile Porosity and Solute Exchange in Dual-Domain Media Using Tracer Experiments and Electrical Measurements in a Hassler-Type Core Holder

NASA Astrophysics Data System (ADS)

Falzone, S.; Slater, L. D.; Day-Lewis, F. D.; Parker, B. L.; Keating, K.; Robinson, J.

2017-12-01

Mass transfer is the process by which solute is retained in less-mobile porosity domains, and later released into the mobile porosity domain. This process is often responsible for the slow arrival and gradual release of contaminants and solute tracers. Recent studies have outlined methods using dual-domain mass transfer (DDMT) models for characterizing this phenomenon. These models use the non-linear relationship of bulk (σb) and fluid (σf) conductivity, collected from electrical methods during tracer experiments, to characterize the less-mobile/mobile porosity ratio (β) and the mass-transfer rate coefficient (α). DDMT models use the hysteretic σb-σf relationship observed while solute tracers are injected and then flushed from a sample media. Due to limitations in observing the hysteretic σb-σf relationship, this method has not been used to characterize low permeability samples. We have developed an experimental method for testing porous rock cores that allows us to develop a fundamental understanding of contaminant storage and release in consolidated rock. We test the approach on cores from sedimentary rock sites where mass transfer is expected to occur between hydraulically connected fractures and the adjacent low permeability rock matrix. Our method uses a Hassler-type core holder, designed to apply confining pressure around the outside of a sample core, which hydraulically isolates the sample core, allowing water to be injected into it at increased pressures. The experimental apparatus was also designed to measure σb with spectral induced polarization (SIP) measurements, and σf from a sampling port located at the center of the core. Cores were initially saturated with a solution with high electrical conductivity ( 80000 μS/cm). DI water was then injected into the cores at elevated pressures (>60 psi) and the saturating solution was flushed from the cores, in order to generate flow rates fast enough to capture the non-linear σb-σf relationship expected when DDMT occurs. Our initial results demonstrate the existence of a non-linear σb-σf relationship indicative of DDMT for a tight sandstone core from a contaminated fractured rock site. Integrating the electrical results with known physical characteristics of the cores, we are able to quantify the mass transfer characteristics of the cores.

FIELD TRAPPING OF SUBSURFACE VAPOR PHASE PETROLEUM HYDROCARBONS

EPA Science Inventory

Soil gas samples from intact soil cores were collected on adsorbents at a field site, then thermally desorbed and analyzed by laboratory gas chromatography (GC). ertical concentration profiles of predominant vapor phase petroleum hydrocarbons under ambient conditions were obtaine...

Telemetric measurement of body core temperature in exercising unconditioned Labrador retrievers.

PubMed

Angle, T Craig; Gillette, Robert L

2011-04-01

This project evaluated the use of an ingestible temperature sensor to measure body core temperature (Tc) in exercising dogs. Twenty-five healthy, unconditioned Labrador retrievers participated in an outdoor 3.5-km run, completed in 20 min on a level, 400-m grass track. Core temperature was measured continuously with a telemetric monitoring system before, during, and after the run. Data were successfully collected with no missing data points during the exercise. Core temperature elevated in the dogs from 38.7 ± 0.3°C at pre-exercise to 40.4 ± 0.6°C post-exercise. While rectal temperatures are still the standard of measurement, telemetric core temperature monitors may offer an easier and more comfortable means of sampling core temperature with minimal human and mechanical interference with the exercising dog.

Telemetric measurement of body core temperature in exercising unconditioned Labrador retrievers

PubMed Central

Angle, T. Craig; Gillette, Robert L.

2011-01-01

This project evaluated the use of an ingestible temperature sensor to measure body core temperature (Tc) in exercising dogs. Twenty-five healthy, unconditioned Labrador retrievers participated in an outdoor 3.5-km run, completed in 20 min on a level, 400-m grass track. Core temperature was measured continuously with a telemetric monitoring system before, during, and after the run. Data were successfully collected with no missing data points during the exercise. Core temperature elevated in the dogs from 38.7 ± 0.3°C at pre-exercise to 40.4 ± 0.6°C post-exercise. While rectal temperatures are still the standard of measurement, telemetric core temperature monitors may offer an easier and more comfortable means of sampling core temperature with minimal human and mechanical interference with the exercising dog. PMID:21731189

Enhanced-locality fiber-optic two-photon-fluorescence live-brain interrogation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fedotov, I. V.; Doronina-Amitonova, L. V.; Russian Quantum Center, ul. Novaya 100, Skolkovo, Moscow Region 1430125

2014-02-24

Two-photon excitation is shown to substantially enhance the locality of fiber-based optical interrogation of strongly scattering biotissues. In our experiments, a high-numerical-aperture, large-core-are fiber probe is used to deliver the 200-fs output of a 100-MHz mode-locked ytterbium fiber laser to samples of live mouse brain, induce two-photon fluorescence of nitrogen–vacancy centers in diamond markers in brain sample. Fiber probes with a high numerical aperture and a large core area are shown to enable locality enhancement in fiber-laser–fiber-probe two-photon brain excitation and interrogation without sacrificing the efficiency of fluorescence response collection.

Physical-Property Measurements on Core samples from Drill-Holes DB-1 and DB-2, Blue Mountain Geothermal Prospect, North-Central Nevada

USGS Publications Warehouse

Ponce, David A.; Watt, Janet T.; Casteel, John; Logsdon, Grant

2009-01-01

From May to June 2008, the U.S. Geological Survey (USGS) collected and measured physical properties on 36 core samples from drill-hole Deep Blue No. 1 (DB-1) and 46 samples from drill-hole Deep Blue No. 2 (DB-2) along the west side of Blue Mountain about 40 km west of Winnemucca, Nev. These data were collected as part of an effort to determine the geophysical setting of the Blue Mountain geothermal prospect as an aid to understanding the geologic framework of geothermal systems throughout the Great Basin. The physical properties of these rocks and other rock types in the area create a distinguishable pattern of gravity and magnetic anomalies that can be used to infer their subsurface geologic structure. Drill-holes DB-1 and DB-2 were spudded in alluvium on the western flank of Blue Mountain in 2002 and 2004, respectively, and are about 1 km apart. Drill-hole DB-1 is at a ground elevation of 1,325 m and was drilled to a depth of 672 m and drill-hole DB-2 is at a ground elevation of 1,392 m and was drilled to a depth of 1522 m. Diameter of the core samples is 6.4 cm. These drill holes penetrate Jurassic and Triassic metasedimentary rocks predominantly consisting of argillite, mudstone, and sandstone; Tertiary diorite and gabbro; and younger Tertiary felsic dikes.

The effect of mode and context on survey results: Analysis of data from the Health Survey for England 2006 and the Boost Survey for London

PubMed Central

2010-01-01

Background Health-related data at local level could be provided by supplementing national health surveys with local boosts. Self-completion surveys are less costly than interviews, enabling larger samples to be achieved for a given cost. However, even when the same questions are asked with the same wording, responses to survey questions may vary by mode of data collection. These measurement differences need to be investigated further. Methods The Health Survey for England in London ('Core') and a London Boost survey ('Boost') used identical sampling strategies but different modes of data collection. Some data were collected by face-to-face interview in the Core and by self-completion in the Boost; other data were collected by self-completion questionnaire in both, but the context differed. Results were compared by mode of data collection using two approaches. The first examined differences in results that remained after adjusting the samples for differences in response. The second compared results after using propensity score matching to reduce any differences in sample composition. Results There were no significant differences between the two samples for prevalence of some variables including long-term illness, limiting long-term illness, current rates of smoking, whether participants drank alcohol, and how often they usually drank. However, there were a number of differences, some quite large, between some key measures including: general health, GHQ12 score, portions of fruit and vegetables consumed, levels of physical activity, and, to a lesser extent, smoking consumption, the number of alcohol units reported consumed on the heaviest day of drinking in the last week and perceived social support (among women only). Conclusion Survey mode and context can both affect the responses given. The effect is largest for complex question modules but was also seen for identical self-completion questions. Some data collected by interview and self-completion can be safely combined. PMID:20868528

Paleoenvironmental reconstruction of lagoonal strata from Sri Lanka using multiple physical properties proxies to assure stratigraphic continuity

NASA Astrophysics Data System (ADS)

Ranasinghage, P. N.; Ortiz, J. D.; Moore, A.; Siriwardana, C.

2009-12-01

Core collapsing is a common problem in studies of lagoonal sediment cores. Coring liquefied sediments below the water table can lead to collapse of material from upper core drives in to the hole. This can be prevented by casing the hole. But casing is not always possible due to practical issues such as coring device type, resources, or time constraints. In such cases identifying the collapsed material in each drive is necessary to ensure accurate results. Direct visual identification of collapsed portion is not always possible and may not be precise. This study successfully recognized collapsed material using a suite of physical properties measurements including: visible (VIS) reflectance spectroscopy, magnetic susceptibility and grain size spectra. This enables us to use the verified stratigraphically continuous records for paleo-environmental studies. Sediment cores were collected from three coastal lagoons and a swale along south eastern and eastern Sri Lanka. Cores were collected using a customized AMS soil coring device with a 1-m long sample barrel. The metal barrel of this instrument collects a 2.5 cm diameter sample in 1-m long plastic tubes. Coring was conducted to refusal, with a maximum depth of 5 m. Casing was not applied to the holes due to small core diameter and time constrains. Drill holes were placed at locations situated both below and above the water level of the lagoons. A total of 100 m of sediment core were obtained from these locations. After opening the cores, suspected collapsed material was initially identified by visual observation using a high power binocular microscope. Particle size, magnetic susceptibility, X-ray fluorescence (XRF) and Diffuse Spectral Reflectance (DSR) was then measured on all cores at 1-2 cm resolution to precisely define the repeated sediment intervals. Down core variation plots of magnetic susceptibility, CIE L* (lightness), a*(red/green difference), b* (blue and yellow difference) clearly record abrupt changes at core drive boundaries at the presence of collapsed material. The correlation of grain-size spectra from the bottom and top of consecutive drives was used to precisely determine the thickness of the collapsed material between drives. Our analysis of 48 m of core material thus far indicates that ~4.4m or ~9% of the record represents collapsed material which can be excluded from further study. The remaining continuous record was analyzed for paleoenvironmental studies. Down core variation of grain size, geochemical ratios, principle components of DSR and geochemical data, and magnetic susceptibility from all locations indicate a gradual filling of these deep lagoons and a transition from reducing to oxic conditions. According to an age model constructed for a nearby lagoon the onset of regression began ~6,000 years BP. Several instantaneous sedimentation events were recorded in all lagoons. Further studies will be carried out to determine whether these represent tsunami, storm surge, or flood deposits.

Biogas production from pineapple core - A preliminary study

NASA Astrophysics Data System (ADS)

Jehan, O. S.; Sanusi, S. N. A.; Sukor, M. Z.; Noraini, M.; Buddin, M. M. H. S.; Hamid, K. H. K.

2017-09-01

Anaerobic digestion of pineapple waste was investigated by using pineapple core as the sole substrate. Pineapple core was chosen due to its high total sugar content thus, indicating high amount of fermentable sugar. As digestion process requires the involvement of microorganisms, wastewater from the same industry was added in the current study at ratio of 1:1 by weight. Two different sources of wastewater (Point 1 and Point 2) were used in this study to distinguish the performance of microorganism consortia in both samples. The experiment was conducted by using a lab scale batch anaerobic digester made up from 5L container with separate gas collecting system. The biogas produced was collected by using water displacement method. The experiment was conducted for 30 days and the biogas produced was collected and its volume was recorded at 3 days interval. Based on the data available, wastewater from the first point recorded higher volume of biogas with the total accumulated biogas volume is 216.1 mL. Meanwhile, wastewater sample from Point 2 produced a total of 140.5 mL of biogas, by volume. The data shows that the origin and type of microorganism undeniably play significant role in biogas production. In fact, other factors; pH of wastewater and temperature were also known to affect biogas production. The anaerobic digestion is seen as the promising and sustainable alternatives to current disposal method.

The 2005 MARTE Robotic Drilling Experiment in Río Tinto, Spain: Objectives, Approach, and Results of a Simulated Mission to Search for Life in the Martian Subsurface

NASA Astrophysics Data System (ADS)

Stoker, Carol R.; Cannon, Howard N.; Dunagan, Stephen E.; Lemke, Lawrence G.; Glass, Brian J.; Miller, David; Gomez-Elvira, Javier; Davis, Kiel; Zavaleta, Jhony; Winterholler, Alois; Roman, Matt; Rodriguez-Manfredi, Jose Antonio; Bonaccorsi, Rosalba; Bell, Mary Sue; Brown, Adrian; Battler, Melissa; Chen, Bin; Cooper, George; Davidson, Mark; Fernández-Remolar, David; Gonzales-Pastor, Eduardo; Heldmann, Jennifer L.; Martínez-Frías, Jesus; Parro, Victor; Prieto-Ballesteros, Olga; Sutter, Brad; Schuerger, Andrew C.; Schutt, John; Rull, Fernando

2008-10-01

The Mars Astrobiology Research and Technology Experiment (MARTE) simulated a robotic drilling mission to search for subsurface life on Mars. The drill site was on Peña de Hierro near the headwaters of the Río Tinto river (southwest Spain), on a deposit that includes massive sulfides and their gossanized remains that resemble some iron and sulfur minerals found on Mars. The mission used a fluidless, 10-axis, autonomous coring drill mounted on a simulated lander. Cores were faced; then instruments collected color wide-angle context images, color microscopic images, visible near infrared point spectra, and (lower resolution) visible-near infrared hyperspectral images. Cores were then stored for further processing or ejected. A borehole inspection system collected panoramic imaging and Raman spectra of borehole walls. Life detection was performed on full cores with an adenosine triphosphate luciferin-luciferase bioluminescence assay and on crushed core sections with SOLID2, an antibody array-based instrument. Two remotely located science teams analyzed the remote sensing data and chose subsample locations. In 30 days of operation, the drill penetrated to 6 m and collected 21 cores. Biosignatures were detected in 12 of 15 samples analyzed by SOLID2. Science teams correctly interpreted the nature of the deposits drilled as compared to the ground truth. This experiment shows that drilling to search for subsurface life on Mars is technically feasible and scientifically rewarding.

The 2005 MARTE Robotic Drilling Experiment in Río Tinto, Spain: objectives, approach, and results of a simulated mission to search for life in the Martian subsurface.

PubMed

Stoker, Carol R; Cannon, Howard N; Dunagan, Stephen E; Lemke, Lawrence G; Glass, Brian J; Miller, David; Gomez-Elvira, Javier; Davis, Kiel; Zavaleta, Jhony; Winterholler, Alois; Roman, Matt; Rodriguez-Manfredi, Jose Antonio; Bonaccorsi, Rosalba; Bell, Mary Sue; Brown, Adrian; Battler, Melissa; Chen, Bin; Cooper, George; Davidson, Mark; Fernández-Remolar, David; Gonzales-Pastor, Eduardo; Heldmann, Jennifer L; Martínez-Frías, Jesus; Parro, Victor; Prieto-Ballesteros, Olga; Sutter, Brad; Schuerger, Andrew C; Schutt, John; Rull, Fernando

2008-10-01

The Mars Astrobiology Research and Technology Experiment (MARTE) simulated a robotic drilling mission to search for subsurface life on Mars. The drill site was on Peña de Hierro near the headwaters of the Río Tinto river (southwest Spain), on a deposit that includes massive sulfides and their gossanized remains that resemble some iron and sulfur minerals found on Mars. The mission used a fluidless, 10-axis, autonomous coring drill mounted on a simulated lander. Cores were faced; then instruments collected color wide-angle context images, color microscopic images, visible-near infrared point spectra, and (lower resolution) visible-near infrared hyperspectral images. Cores were then stored for further processing or ejected. A borehole inspection system collected panoramic imaging and Raman spectra of borehole walls. Life detection was performed on full cores with an adenosine triphosphate luciferin-luciferase bioluminescence assay and on crushed core sections with SOLID2, an antibody array-based instrument. Two remotely located science teams analyzed the remote sensing data and chose subsample locations. In 30 days of operation, the drill penetrated to 6 m and collected 21 cores. Biosignatures were detected in 12 of 15 samples analyzed by SOLID2. Science teams correctly interpreted the nature of the deposits drilled as compared to the ground truth. This experiment shows that drilling to search for subsurface life on Mars is technically feasible and scientifically rewarding.

Quality of core collections for effective utilisation of genetic resources review, discussion and interpretation.

PubMed

Odong, T L; Jansen, J; van Eeuwijk, F A; van Hintum, T J L

2013-02-01

Definition of clear criteria for evaluation of the quality of core collections is a prerequisite for selecting high-quality cores. However, a critical examination of the different methods used in literature, for evaluating the quality of core collections, shows that there are no clear guidelines on the choices of quality evaluation criteria and as a result, inappropriate analyses are sometimes made leading to false conclusions being drawn regarding the quality of core collections and the methods to select such core collections. The choice of criteria for evaluating core collections appears to be based mainly on the fact that those criteria have been used in earlier publications rather than on the actual objectives of the core collection. In this study, we provide insight into different criteria used for evaluating core collections. We also discussed different types of core collections and related each type of core collection to their respective evaluation criteria. Two new criteria based on genetic distance are introduced. The consequences of the different evaluation criteria are illustrated using simulated and experimental data. We strongly recommend the use of the distance-based criteria since they not only allow the simultaneous evaluation of all variables describing the accessions, but they also provide intuitive and interpretable criteria, as compared with the univariate criteria generally used for the evaluation of core collections. Our findings will provide genebank curators and researchers with possibilities to make informed choices when creating, comparing and using core collections.

Three Types of Earth's Inner Core Boundary

NASA Astrophysics Data System (ADS)

Tian, D.; Wen, L.

2017-12-01

The Earth's inner core boundary (ICB) is the site where the liquid outer core solidifies and the solid inner core grows. Thus, the fine-scale structure of the ICB is important for our understanding of the thermo-compositional state of the Earth's core. In this study, we collect a large set of seismic records with high-quality pre-critical PKiKP and PcP phase pairs, recorded by two dense seismic arrays, Hi-net in Japan and USArray in US. This dataset samples the ICB regions beneath East Asia, Mexico and the Bering Sea. We use differential travel times, amplitude ratios and waveform differences between PKiKP and PcP phases to constrain fine-scale structure of the ICB. The sampled ICB can be grouped into three types based on their seismic characteristics: (1) a simple ICB with a flat and sharp boundary, (2) a bumpy ICB with topographic height changes of 10 km, and (3) a localized mushy ICB with laterally varying thicknesses of 4-8 km. The laterally varying fine-scale structure of the ICB indicates existence of complex small-scale forces at the surface and a laterally varying solidification process of the inner core due to lateral variation of thermo-compositional condition near the ICB.

The Hominin Sites and Paleolakes Drilling Project (HSPDP): Understanding the paleoenvironmental and paleoclimatic context of human origins through continental drilling

NASA Astrophysics Data System (ADS)

Cohen, Andrew S.; Campisano, Christopher; Asrat, Asfawossen; Arrowsmith, Ramon; Deino, Alan; Feibel, Craig; Hill, Andrew; Kingston, John; Lamb, Henry; Lowenstein, Tim; Olago, Daniel; Bernhart Owen, R.; Renaut, Robin; Schabitz, Frank; Trauth, Martin

2015-04-01

The influence of climate and environmental history on human evolution is an existential question that continues to be hotly debated, in part because of the paucity of high resolution records collected in close proximity to the key fossil and archaeological evidence. To address this issue and transform the scientific debate, the HSPDP was developed to collect lacustrine sediment drill cores from basins in Kenya and Ethiopia that collectively encompass critical time intervals and locations for Plio-Quaternary human evolution in East Africa. After a 17 month campaign, drilling was completed in November, 2014, with over 1750m of core collected from 11 boreholes from five areas (1930m total drilling length, avg. 91% recovery). The sites, from oldest to youngest, include 1) N. Awash, Ethiopia (~3.5-2.9Ma core interval); 2) Baringo-Tugen Hills, Kenya (~3.3-2.5Ma); 3) West Turkana, Kenya (~1.9-1.4Ma); L. Magadi, Kenya (0.8-0Ma) and the Chew Bahir Basin, Ethiopia (~0.5-0Ma). Initial core description (ICD) and sampling for geochronology, geochemistry and paleoecology studies had been completed by mid2014, with the two remaining sites (Magadi and Chew Bahir) scheduled for ICD work in early 2015. Whereas the primary scientific targets were the lacustrine deposits from the hominin-bearing basin depocenters, many intervals of paleosols (representative of low lake stands and probable arid periods) were also encountered in drill cores. Preliminary analyses of drill core sedimentology and geochemistry show both long-term lake level changes and cyclic variability in lake levels, both of which may be indicative of climatic forcing events of interest to paleoanthropologists. Authors of this abstract also include the entire HSPDP field team.

Multiplatform sampling (ship, aircraft, and satellite) of a Gulf Stream warm core ring

NASA Technical Reports Server (NTRS)

Smith, Raymond C.; Brown, Otis B.; Hoge, Frank E.; Baker, Karen S.; Evans, Robert H.

1987-01-01

The purpose of this paper is to demonstrate the ability to meet the need to measure distributions of physical and biological properties of the ocean over large areas synoptically and over long time periods by means of remote sensing utilizing contemporaneous buoy, ship, aircraft, and satellite (i.e., multiplatform) sampling strategies. A mapping of sea surface temperature and chlorophyll fields in a Gulf Stream warm core ring using the multiplatform approach is described. Sampling capabilities of each sensing system are discussed as background for the data collected by means of these three dissimilar methods. Commensurate space/time sample sets from each sensing system are compared, and their relative accuracies in space and time are determined. The three-dimensional composite maps derived from the data set provide a synoptic perspective unobtainable from single platforms alone.

Results of Laboratory Tests on Surficial Sediments from the Upper Continental Slope Northern Gulf of Mexico

USGS Publications Warehouse

Booth, James S.

1979-01-01

The purpose of this report is to present the results of geo­technical, textural, and chemical tests performed on samples from the upper Continental Slope, northern Gulf of Mexico.The samples were collected by a piston corer up to 12 m (40 ft.} in length with a head weight of 908 kg (one ton}. The inside diameter of the C. A. B. liner was 89 mm (3.5 inches}. Upon retrieval, the cores were cut in 1.5 m sections, examined for evidence of disturbance, then, if in acceptable condition, were sealed and placed in their in situ vertical position in a refrigerated van. Once ashore, the sections were opened, sealed with wax, recapped and stored as before.The cores were split lengthwise for analysis. One half of the core was X-rayed and the radiograph was carefully examined as a further check for disturbance. This half was then archived. The other half of the core was used for the laboratory work.

Planetary Sample Caching System Design Options

NASA Technical Reports Server (NTRS)

Collins, Curtis; Younse, Paulo; Backes, Paul

2009-01-01

Potential Mars Sample Return missions would aspire to collect small core and regolith samples using a rover with a sample acquisition tool and sample caching system. Samples would need to be stored in individual sealed tubes in a canister that could be transfered to a Mars ascent vehicle and returned to Earth. A sample handling, encapsulation and containerization system (SHEC) has been developed as part of an integrated system for acquiring and storing core samples for application to future potential MSR and other potential sample return missions. Requirements and design options for the SHEC system were studied and a recommended design concept developed. Two families of solutions were explored: 1)transfer of a raw sample from the tool to the SHEC subsystem and 2)transfer of a tube containing the sample to the SHEC subsystem. The recommended design utilizes sample tool bit change out as the mechanism for transferring tubes to and samples in tubes from the tool. The SHEC subsystem design, called the Bit Changeout Caching(BiCC) design, is intended for operations on a MER class rover.

Measuring Concentrations of Dissolved Methane and Ethane and the 13 C of Methane in Shale and Till.

PubMed

Hendry, M Jim; Barbour, S Lee; Schmeling, Erin E; Mundle, Scott O C

2017-01-01

Baseline characterization of concentrations and isotopic values of dissolved natural gases is needed to identify contamination caused by the leakage of fugitive gases from oil and gas activities. Methods to collect and analyze baseline concentration-depth profiles of dissolved CH 4 and C 2 H 6 and δ 13 C-CH 4 in shales and Quaternary clayey tills were assessed at two sites in the Williston Basin, Canada. Core and cuttings samples were stored in Isojars ® in a low O 2 headspace prior to analysis. Measurements and multiphase diffusion modeling show that the gas concentrations in core samples yield well-defined and reproducible depth profiles after 31-d equilibration. No measurable oxidative loss or production during core sample storage was observed. Concentrations from cuttings and mud gas logging (including IsoTubes ® ) were much lower than from cores, but correlated well. Simulations suggest the lower concentrations from cuttings can be attributed to drilling time, and therefore their use to define gas concentration profiles may have inherent limitations. Calculations based on mud gas logging show the method can provide estimates of core concentrations if operational parameters for the mud gas capture cylinder are quantified. The δ 13 C-CH 4 measured from mud gas, IsoTubes ® , cuttings, and core samples are consistent, exhibiting slight variations that should not alter the implications of the results in identifying the sources of the gases. This study shows core and mud gas techniques and, to a lesser extent, cuttings, can generate high-resolution depth profiles of dissolved hydrocarbon gas concentrations and their isotopes. © 2016, National Ground Water Association.

Pollution from the 2014-15 Bárðarbunga eruption monitored by snow cores from the Vatnajökull glacier, Iceland

NASA Astrophysics Data System (ADS)

Galeczka, Iwona; Eiriksdottir, Eydis Salome; Pálsson, Finnur; Oelkers, Eric; Lutz, Stefanie; Benning, Liane G.; Stefánsson, Andri; Kjartansdóttir, Ríkey; Gunnarsson-Robin, Jóhann; Ono, Shuhei; Ólafsdóttir, Rósa; Jónasdóttir, Elín Björk; Gislason, Sigurdur R.

2017-11-01

The chemical composition of Icelandic rain and snow is dominated by marine aerosols, however human and volcanic activity can also affect these compositions. The six month long 2014-15 Bárðarbunga volcanic eruption was the largest in Iceland for more than 200 years and it released into the atmosphere an average of 60 kt/day SO2, 30 kt/day CO2, 500 t/day HCl and 280 t/day HF. To study the effect of this eruption on the winter precipitation, snow cores were collected from the Vatnajökull glacier and the highlands northeast of the glacier. In addition to 29 bulk snow cores from that precipitated from September 2014 until March 2015, two cores were sampled in 21 and 44 increments to quantify the spatial and time evolution of the chemical composition of the snow. The pH and chemical compositions of melted snow samples indicate that snow has been affected by the volcanic gases emitted during the Bárðarbunga eruption. The pH of the melted bulk snow cores ranged from 4.41 to 5.64 with an average value of 5.01. This is four times greater H+ activity than pure water saturated with the atmospheric CO2. The highest concentrations of volatiles in the snow cores were found close to the eruption site as predicted from CALPUFF SO2 gas dispersion quality model. The anion concentrations (SO4, Cl, and F) were higher and the pH was lower compared to equivalent snow samples collected during 1997-2006 from the unpolluted Icelandic Langjökull glacier. Higher SO4 and Cl concentrations in the snow compared with the unpolluted rainwater of marine origin confirm the addition of a non-seawater SO4 and Cl. The δ34S isotopic composition confirms that the sulphur addition is of volcanic aerosol origin. The chemical evolution of the snow with depth reflects changes in the lava effusion and gas emission rates. Those rates were the highest at the early stage of the eruption. Snow that fell during that time, represented by samples from the deepest part of the snow cores, had the lowest pH and highest concentrations of SO4, F, Cl and metals, compared with snow that fell later in the winter. Also the Al concentration, did exceed World Health Organisation drinking water standard of 3.7 μmol/kg in the lower part of the snow core closest to the eruption site. Collected snow represents the precipitation that fell during the eruption period. Nevertheless, only minor environmental impacts are evident in the snow due to its interaction with the volcanic aerosol gases. In addition, the microbial communities identified in the snow that fell during the eruption were similar to those found in snow from other parts of the Arctic, confirming an insignificant impact of this eruption on the snow microecology.

First X-Ray absorption spectroscopy results on Aeolian dust archived in Antarctica and Alpine firn cores

NASA Astrophysics Data System (ADS)

Marcelli, A.; Maggi, V.; Cibin, G.; Sala, M.; Marino, F.; Delmonte, B.

2006-12-01

We present the first x-ray absorption spectroscopy (XAS) data at the Fe K-edge collected on insoluble mineral dust from Talos Dome firn core (TDC, 159°04'E, 72°46'S, 2316 m a.s.l., mean accumulation rate 8 g cm-2 yr- 1), drilled in the framework of the International Trans Antarctic Scientific Expedition (ITASE), and from a Colle del Lys 2003 firn core (CDL03, 45°92'N, 7°86'E, 4248m a.s.l., mean accumulation rate 134 g cm-2 yr-1, Lys Glacier, Mt. Rosa, Italy). The low concentration of mineral particles, obtained by filtering each firn core melted samples on Nuclepore membranes in a 1000 class clean room, required a specific procedure to prepare the samples necessary to the successful collection of the XAS data. The firn samples were decontaminated in clean room under laminar flow bench by means of a ceramic knife and discarding the external part of the cores. Analyses of the insoluble particle content were performed by particle counter Beckman CounterãMultisizer III in order to defined concentration and size distribution of particles in each samples. A dedicated HV experimental chamber, devoted to the realization of XAS experiments on very low absorber concentration samples, was developed and realized in the framework of the CryoAlp collaboration at IMONT, the Italian National Institute for Mountains. The original experimental setup, thanks to the presence of an in-vacuum sample micromanipulator and special sample alignment and docking system installed for these experiments at the Stanford Synchrotron Radiation Laboratory at the beamline 6-2, allows both normal-incidence X-ray Fluorescence detection using a Ketek SDD detector having an energy resolution of about 150 eV and extremely low energy detection limit, and Total X-ray Reflection Fluorescence and Absorption Spectroscopy measurements. The high quality of the XANES experiments performed, using both normal incidence and Total Reflection XAS measurements, allowed recognizing iron-inclusion mineral fractions. Samples for Total Reflection XAS measurements were prepared just for this kind of measurements by depositing the insoluble mineral dust on clean Si wafer substrates. In addition, the XANES spectra show clear differences, corresponding to different samples mineral iron hosts, demonstrating that with this fully non-distructive technique, new information about the dust mineralogy at very low concentration can be performed. The analysis is then complementary to other well established techniques like XRD and PIXE.

Lithologic descriptions of two cores and ground-water-quality data from five counties in the northeastern part of the coastal plain of South Carolina, 1988 and 1991

USGS Publications Warehouse

Falls, W.F.

1994-01-01

This report presents data collected as part of a hydrologic investigation of Darlington, Dillon, Florence, Marion, and Marlboro Counties in the northeastern part of the Coastal Plain of South Carolina. These data include lithologic descriptions of sediment recovered from two continuously cored boreholes and water-quality results for samples collected from 17 existing wells. One continuously cored borehole was drilled near Lake Darpo in the northern part of Darlington County to a total depth of 447 feet below land surface. The other borehole was drilled in Lake City in the south-central part of Florence County to a total depth of 1,090 feet below land surface. Water-quality results presented in this report include specific conductance, dissolved oxygen, temperature, pH, alkalinity, major- and minor-ion chemistry, and hydrogen sulfide.

Faster, better, cheaper: lean labs are the key to future survival.

PubMed

Bryant, Patsy M; Gulling, Richard D

2006-03-28

Process improvement techniques have been used in manufacturing for many years to rein in costs and improve quality. Health care is now grappling with similar challenges. The Department of Laboratory Services at Good Samaritan Hospital, a 560-bed facility in Dayton, OH, used the Lean process improvement method in a 12-week project to streamline its core laboratory processes. By analyzing the flow of samples through the system and identifying value-added and non-value-added steps, both in the laboratory and during the collection process, Good Samaritan's project team redesigned systems and reconfigured the core laboratory layout to trim collection-to-results time from 65 minutes to 40 minutes. As a result, virtually all morning results are available to physicians by 7 a.m., critical values are called to nursing units within 30 minutes, and core laboratory services are optimally staffed for maximum cost-effectiveness.

Sedimentation and sediment chemistry, Neopit Mill Pond, Menominee Indian Reservation, Wisconsin, 2001

USGS Publications Warehouse

Fitzpatrick, Faith A.; Peppler, Marie C.

2003-01-01

The volume, texture, and chemistry of sediment deposited in a mill pond on the West Branch of the Wolf River at Neopit, Wis., Menominee Reservation, were studied in 2001-2002. The study was accomplished by examining General Land Office Survey Notes from 1854, establishing 12 transects through the mill pond, conducting soundings of the soft and hard bottom along each transect, and collecting core samples for preliminary screening of potential contaminants. Combined information from transects, cores, and General Land Office Survey notes were used to reconstruct the pre-dam location of the West Branch of the Wolf River through the mill pond. Neopit Mill Pond contains approximately 253 acre-ft of organic-rich muck, on average about 1.2 ft thick, that was deposited after the dam was built. Elevated concentrations of polycyclic aromatic hydrocarbons (PAHs) associated with creosote and pentachlorophenol were found in post-dam sediment samples collected from Neopit Mill Pond. Trace-element concentrations were at or near background concentrations. Further study and sampling are needed to identify the spatial extent and variability of the PAHs, pentachlorophenol, and other byproducts from wood preservatives

How iSamples (Internet of Samples in the Earth Sciences) Improves Sample and Data Stewardship in the Next Generation of Geoscientists

NASA Astrophysics Data System (ADS)

Hallett, B. W.; Dere, A. L. D.; Lehnert, K.; Carter, M.

2016-12-01

Vast numbers of physical samples are routinely collected by geoscientists to probe key scientific questions related to global climate change, biogeochemical cycles, magmatic processes, mantle dynamics, etc. Despite their value as irreplaceable records of nature the majority of these samples remain undiscoverable by the broader scientific community because they lack a digital presence or are not well-documented enough to facilitate their discovery and reuse for future scientific and educational use. The NSF EarthCube iSamples Research Coordination Network seeks to develop a unified approach across all Earth Science disciplines for the registration, description, identification, and citation of physical specimens in order to take advantage of the new opportunities that cyberinfrastructure offers. Even as consensus around best practices begins to emerge, such as the use of the International Geo Sample Number (IGSN), more work is needed to communicate these practices to investigators to encourage widespread adoption. Recognizing the importance of students and early career scientists in particular to transforming data and sample management practices, the iSamples Education and Training Working Group is developing training modules for sample collection, documentation, and management workflows. These training materials are made available to educators/research supervisors online at http://earthcube.org/group/isamples and can be modularized for supervisors to create a customized research workflow. This study details the design and development of several sample management tutorials, created by early career scientists and documented in collaboration with undergraduate research students in field and lab settings. Modules under development focus on rock outcrops, rock cores, soil cores, and coral samples, with an emphasis on sample management throughout the collection, analysis and archiving process. We invite others to share their sample management/registration workflows and to develop training modules. This educational approach, with evolving digital materials, can help prepare future scientists to perform research in a way that will contribute to EarthCube data integration and discovery.

Lunar Polar Coring Lander

NASA Technical Reports Server (NTRS)

Angell, David; Bealmear, David; Benarroche, Patrice; Henry, Alan; Hudson, Raymond; Rivellini, Tommaso; Tolmachoff, Alex

1990-01-01

Plans to build a lunar base are presently being studied with a number of considerations. One of the most important considerations is qualifying the presence of water on the Moon. The existence of water on the Moon implies that future lunar settlements may be able to use this resource to produce things such as drinking water and rocket fuel. Due to the very high cost of transporting these materials to the Moon, in situ production could save billions of dollars in operating costs of the lunar base. Scientists have suggested that the polar regions of the Moon may contain some amounts of water ice in the regolith. Six possible mission scenarios are suggested which would allow lunar polar soil samples to be collected for analysis. The options presented are: remote sensing satellite, two unmanned robotic lunar coring missions (one is a sample return and one is a data return only), two combined manned and robotic polar coring missions, and one fully manned core retrieval mission. One of the combined manned and robotic missions has been singled out for detailed analysis. This mission proposes sending at least three unmanned robotic landers to the lunar pole to take core samples as deep as 15 meters. Upon successful completion of the coring operations, a manned mission would be sent to retrieve the samples and perform extensive experiments of the polar region. Man's first step in returning to the Moon is recommended to investigate the issue of lunar polar water. The potential benefits of lunar water more than warrant sending either astronauts, robots or both to the Moon before any permanent facility is constructed.

Core food of the French food supply: second Total Diet Study.

PubMed

Sirot, V; Volatier, J L; Calamassi-Tran, G; Dubuisson, C; Menard, C; Dufour, A; Leblanc, J C

2009-05-01

As first described in the 1980s, the core food intake model allows a precise assessment of dietary nutrient intake and dietary exposure to contaminants insofar as it reflects the eating habits of a target population and covers the most important foods in terms of consumption, selected nutrient and contaminant contribution. This model has been used to set up the sampling strategy of the second French Total Diet Study (TDS) with the aim of obtaining a realistic panorama of nutrient intakes and contaminant exposure for the whole population, useful for quantitative risk assessment. Data on consumption trends and eating habits from the second French individual food consumption survey (INCA2) as well as data from a 2004 purchase panel of French households (SECODIP) were used to identify the core foods to be sampled. A total of 116 core foods on a national scale and 70 core foods on a regional scale were selected according to (1) the consumption data for adults and children, (2) their consumer rates, and (3) their high contribution to exposure to one or more contaminants of interest. Foods were collected in eight French regions (36 cities) and prepared 'as consumed' to be analysed for their nutritional composition and contamination levels. A total of 20 280 different food products were purchased to make up the 1352 composite samples of core foods to be analysed for additives, environmental contaminants, pesticide residues, trace elements and minerals, mycotoxins and acrylamide. The establishment of such a sampling plan is essential for effective, high-quality monitoring of dietary exposure from a public health point of view.

A new method for reporting and interpreting textural composition of spawning gravel.

Treesearch

Fredrick B. Lotspeich; Fred H. Everest

1981-01-01

A new method has been developed for collecting, sorting, and interpreting gravel quality. Samples are collected with a tri-tube freeze-core device and dry-sorted by using sieves based on the Wentworth scale. An index to the quality of gravel is obtained by dividing geometric mean particle size by the sorting coefficient (a measure of the distribution of grain sizes) of...

Application of phytoscreening to three hazardous waste sites in Arizona.

PubMed

Duncan, Candice M; Mainhagu, Jon; Virgone, Kayla; Ramírez, Denise Moreno; Brusseau, Mark L

2017-12-31

The great majority of prior phytoscreening applications have been conducted in humid and temperate environments wherein groundwater is relatively shallow (~1-6m deep). The objective of this research is to evaluate its use in semi-arid environments for sites with deeper groundwater (>10m). To that end, phytoscreening is applied to three chlorinated-solvent hazardous-waste sites in Arizona. Contaminant concentrations were quantifiable in tree-tissue samples collected from two of the sites (Nogales, Park-Euclid). Contaminant concentrations were detectable, but not quantifiable, for the third site. Tree-tissue concentrations of tetrachloroethene (PCE) ranged from approximately 400-5000ug/kg wet weight for burrobrush, cottonwood, palo verde, and velvet mesquite at the Nogales site. In addition to standard trunk-core samples, leaf samples were collected to test the effectiveness of a less invasive sampling method. Leaf-sample concentrations were quantifiable, but several times lower than the corresponding core-sample concentrations. Comparison of results obtained for the test sites to those reported in the literature suggest that tree species is a major factor mediating observed results. One constraint faced for the Arizona sites was the relative scarcity of mature trees available for sampling, particularly in areas adjacent to industrial zones. The results of this study illustrate that phytoscreening can be used effectively to characterize the presence of groundwater contamination for semi-arid sites with deeper groundwater. Copyright © 2017 Elsevier B.V. All rights reserved.

Application of Phytoscreening to Three Hazardous Waste Sites in Arizona

NASA Astrophysics Data System (ADS)

Duncan, C.

2017-12-01

The great majority of prior phytoscreening applications have been conducted in humid and temperate environments wherein groundwater is relatively shallow ( 1-6m deep). The objective of this research is to evaluate its use in semi-arid environments for sites with deeper groundwater (>10 m). To that end, phytoscreening is applied to three chlorinated-solvent hazardous-waste sites in Arizona. Contaminant concentrations were quantifiable in tree-tissue samples collected from two of the sites (Nogales, Park-Euclid). Contaminant concentrations were detectable, but not quantifiable, for the third site. Tree-tissue concentrations of tetrachloroethene (PCE) ranged from approximately 400-5000 ug/kg wet weight for burrobrush, cottonwood, palo verde, and velvet mesquite at the Nogales site. In addition to standard trunk-core samples, leaf samples were collected to test the effectiveness of a less invasive sampling method. Leaf-sample concentrations were quantifiable, but several times lower than the corresponding core-sample concentrations. Comparison of results obtained for the test sites to those reported in the literature suggest that tree species is amajor factormediating observed results. One constraint faced for the Arizona siteswas the relative scarcity of mature trees available for sampling, particularly in areas adjacent to industrial zones. The results of this study illustrate that phytoscreening can be used effectively to characterize the presence of groundwater contamination for semi-arid sites with deeper groundwater.

Determination of three-dimensional stress orientations in the Wenchuan earthquake Fault Scientific Drilling (WFSD) hole-1: A preliminary result by anelastic strain recovery measurements of core samples

NASA Astrophysics Data System (ADS)

Cui, J.; Lin, W.; Wang, L.; Tang, Z.; Sun, D.; Gao, L.; Wang, W.

2010-12-01

A great and destructive earthquake (Ms 8.0; Mw 7.9), Wunchuan earthquake struck on the Longmen Shan foreland trust zone in Sichuan province, China on 12 May 2008 (Xu et al., 2008; Episodes, Vol.31, pp.291-301). As a rapid response scientific drilling project, Wenchuan earthquake Fault Scientific Drilling (WFSD) started on 6 November 2008 shorter than a half of year from the date of earthquake main shock. The first pilot borehole (hole-1) has been drilled to the target depth (measured depth 1201 m MD, vertical depth 1179 m) at Hongkou, Dujianyan, Sichuan and passed through the main fault of the earthquake around 589 m MD. We are trying to determine three dimensional in-situ stress states in the WFSD boreholes by a core-based method, anelastic strain recovery (ASR) method (Lin et al., 2006; Tectonophysics, Vol4.26, pp.221-238). This method has been applied in several scientific drilling projects (TCDP: Lin et al., 2007; TAO, Vol.18, pp.379-393; NanTtoSEIZE: Byrne et al., 2009; GRL, Vol.36, L23310). These applications confirm the validity of using the ASR technique in determining in situ stresses by using drilled cores. We collected total 15 core samples in a depth range from 340 m MD to 1180 m MD, approximately for ASR measurements. Anelastic normal strains, measured every ten minutes in nine directions, including six independent directions, were used to calculate the anelastic strain tensors. The data of the ASR tests conducted at hole-1 is still undergoing analysis. As a tentative perspective, more than 10 core samples showed coherent strain recovery over one - two weeks. However, 2 or 3 core samples cannot be re-orientated to the global system. It means that we cannot rink the stress orientation determined by the core samples to geological structure. Unfortunately, a few core samples showed irregular strain recovery and were not analyzed further. The preliminary results of ASR tests at hole-1 show the stress orientations and stress regime changes a lot with the depth.

Genetic diversity and population structure analysis to construct a core collection from a large Capsicum germplasm.

PubMed

Lee, Hea-Young; Ro, Na-Young; Jeong, Hee-Jin; Kwon, Jin-Kyung; Jo, Jinkwan; Ha, Yeaseong; Jung, Ayoung; Han, Ji-Woong; Venkatesh, Jelli; Kang, Byoung-Cheorl

2016-11-14

Conservation of genetic diversity is an essential prerequisite for developing new cultivars with desirable agronomic traits. Although a large number of germplasm collections have been established worldwide, many of them face major difficulties due to large size and a lack of adequate information about population structure and genetic diversity. Core collection with a minimum number of accessions and maximum genetic diversity of pepper species and its wild relatives will facilitate easy access to genetic material as well as the use of hidden genetic diversity in Capsicum. To explore genetic diversity and population structure, we investigated patterns of molecular diversity using a transcriptome-based 48 single nucleotide polymorphisms (SNPs) in a large germplasm collection comprising 3,821 accessions. Among the 11 species examined, Capsicum annuum showed the highest genetic diversity (H E  = 0.44, I = 0.69), whereas the wild species C. galapagoense showed the lowest genetic diversity (H E  = 0.06, I = 0.07). The Capsicum germplasm collection was divided into 10 clusters (cluster 1 to 10) based on population structure analysis, and five groups (group A to E) based on phylogenetic analysis. Capsicum accessions from the five distinct groups in an unrooted phylogenetic tree showed taxonomic distinctness and reflected their geographic origins. Most of the accessions from European countries are distributed in the A and B groups, whereas the accessions from Asian countries are mainly distributed in C and D groups. Five different sampling strategies with diverse genetic clustering methods were used to select the optimal method for constructing the core collection. Using a number of allelic variations based on 48 SNP markers and 32 different phenotypic/morphological traits, a core collection 'CC240' with a total of 240 accessions (5.2 %) was selected from within the entire Capsicum germplasm. Compared to the other core collections, CC240 displayed higher genetic diversity (I = 0.95) and genetic evenness (J' = 0.80), and represented a wider range of phenotypic variation (MD = 9.45 %, CR = 98.40 %). A total of 240 accessions were selected from 3,821 Capsicum accessions based on transcriptome-based 48 SNP markers with genome-wide distribution and 32 traits using a systematic approach. This core collection will be a primary resource for pepper breeders and researchers for further genetic association and functional analyses.

Apollo rocks, fines and soil cores

NASA Astrophysics Data System (ADS)

Allton, J.; Bevill, T.

Apollo rocks and soils not only established basic lunar properties and ground truth for global remote sensing, they also provided important lessons for planetary protection (Adv. Space Res ., 1998, v. 22, no. 3 pp. 373-382). The six Apollo missions returned 2196 samples weighing 381.7 kg, comprised of rocks, fines, soil cores and 2 gas samples. By examining which samples were allocated for scientific investigations, information was obtained on usefulness of sampling strategy, sampling devices and containers, sample types and diversity, and on size of sample needed by various disciplines. Diversity was increased by using rakes to gather small rocks on the Moon and by removing fragments >1 mm from soils by sieving in the laboratory. Breccias and soil cores are diverse internally. Per unit weight these samples were more often allocated for research. Apollo investigators became adept at wringing information from very small sample sizes. By pushing the analytical limits, the main concern was adequate size for representative sampling. Typical allocations for trace element analyses were 750 mg for rocks, 300 mg for fines and 70 mg for core subsamples. Age-dating and isotope systematics allocations were typically 1 g for rocks and fines, but only 10% of that amount for core depth subsamples. Historically, allocations for organics and microbiology were 4 g (10% for cores). Modern allocations for biomarker detection are 100mg. Other disciplines supported have been cosmogenic nuclides, rock and soil petrology, sedimentary volatiles, reflectance, magnetics, and biohazard studies . Highly applicable to future sample return missions was the Apollo experience with organic contamination, estimated to be from 1 to 5 ng/g sample for Apollo 11 (Simonheit &Flory, 1970; Apollo 11, 12 &13 Organic contamination Monitoring History, U.C. Berkeley; Burlingame et al., 1970, Apollo 11 LSC , pp. 1779-1792). Eleven sources of contaminants, of which 7 are applicable to robotic missions, were identified and reduced; thus, improving Apollo 12 samples to 0.1 ng/g. Apollo sample documentation preserves the parentage, orientation, and location, packaging, handling and environmental histories of each of the 90,000 subsamples currently curated. Active research on Apollo samples continues today, and because 80% by weight of the Apollo collection remains pristine, researchers have a reservoir of material to support studies well into the future.

Innovations in Sampling Pore Fluids From Deep-Sea Hydrate Sites

NASA Astrophysics Data System (ADS)

Lapham, L. L.; Chanton, J. P.; Martens, C. S.; Schaefer, H.; Chapman, N. R.; Pohlman, J. W.

2003-12-01

We have developed a sea-floor probe capable of collecting and returning undecompressed pore water samples at in situ pressures for determination of dissolved gas concentrations and isotopic values in deep-sea sediments. In the summer of 2003, we tested this instrument in sediments containing gas hydrates off Vancouver Island, Cascadia Margin from ROPOS (a remotely operated vehicle) and in the Gulf of Mexico from Johnson-Sea-Link I (a manned submersible). Sediment push cores were collected alongside the probe to compare methane concentrations and stable carbon isotope compositions in decompressed samples vs. in situ samples obtained by probe. When sufficient gas was available, ethane and propane concentrations and isotopes were also compared. Preliminary data show maximum concentrations of dissolved methane to be 5mM at the Cascadia Margin Fish Boat site (850m water depth) and 12mM in the Gulf of Mexico Bush Hill hydrate site (550m water depth). Methane concentrations were, on average, five times as high in probe samples as in the cores. Carbon isotopic values show a thermogenic input and oxidative effects approaching the sediment-water interface at both sites. This novel data set will provide information that is critical to the understanding of the in situ processes and environmental conditions controlling gas hydrate occurrences in sediments.

Core belief content examined in a large sample of patients using online cognitive behaviour therapy.

PubMed

Millings, Abigail; Carnelley, Katherine B

2015-11-01

Computerised cognitive behavioural therapy provides a unique opportunity to collect and analyse data regarding the idiosyncratic content of people's core beliefs about the self, others and the world. 'Beating the Blues' users recorded a core belief derived through the downward arrow technique. Core beliefs from 1813 mental health patients were coded into 10 categories. The most common were global self-evaluation, attachment, and competence. Women were more likely, and men were less likely (than chance), to provide an attachment-related core belief; and men were more likely, and women less likely, to provide a self-competence-related core belief. This may be linked to gender differences in sources of self-esteem. Those who were suffering from anxiety were more likely to provide power- and control-themed core beliefs and less likely to provide attachment core beliefs than chance. Finally, those who had thoughts of suicide in the preceding week reported less competence themed core beliefs and more global self-evaluation (e.g., 'I am useless') core beliefs than chance. Concurrent symptom level was not available. The sample was not nationally representative, and featured programme completers only. Men and women may focus on different core beliefs in the context of CBT. Those suffering anxiety may need a therapeutic focus on power and control. A complete rejection of the self (not just within one domain, such as competence) may be linked to thoughts of suicide. Future research should examine how individual differences and symptom severity influence core beliefs. Copyright © 2015 The Authors. Published by Elsevier B.V. All rights reserved.

JAMSTEC multibeam surveys and submersible dives around the Hawaiian Islands: a collaborative Japan-USA exploration of Hawaii's deep seafloor

USGS Publications Warehouse

Robinson, Joel E.; Eakins, Barry W.; Kanamatsu, Toshiya; Naka, Jiro; Takahashi, Eiichi; Satake, Kenji; Smith, John R.; Clague, David A.; Yokose, Hisayoshi

2006-01-01

This database release, USGS Data Series 171, contains data collected during four Japan-USA collaborative cruises that characterize the seafloor around the Hawaiian Islands. The Japan Agency for Marine-Earth Science and Technology (JAMSTEC) sponsored cruises in 1998, 1999, 2001, and 2002, to build a greater understanding of the deep marine geology around the Hawaiian Islands. During these cruises, scientists surveyed over 600,000 square kilometers of the seafloor with a hull-mounted multibeam seafloor-mapping sonar system (SEA BEAM® 2112), observed the seafloor and collected samples using robotic and manned submersible dives, collected dredge and piston-core samples, and performed single-channel seismic surveys.

Field and Lab-Based Microbiological Investigations of the Marcellus Shale

NASA Astrophysics Data System (ADS)

Wishart, J. R.; Neumann, K.; Edenborn, H. M.; Hakala, A.; Yang, J.; Torres, M. E.; Colwell, F. S.

2013-12-01

The recent exploration of shales for natural gas resources has provided the opportunity to study their subsurface geochemistry and microbiology. Evidence indicates that shale environments are marked by extreme conditions such as high temperature and pressure, low porosity, permeability and connectivity, and the presence of heavy metals and radionuclides. It has been postulated that many of these shales are naturally sterile due to the high pressure and temperature conditions under which they were formed. However, it has been shown in the Antrim and New Albany shales that microbial communities do exist in these environments. Here we review geochemical and microbiological evidence for the possible habitation of the Marcellus shale by microorganisms and compare these conditions to other shales in the U.S. Furthermore, we describe the development of sampling and analysis techniques used to evaluate microbial communities present in the Marcellus shale and associated hydraulic fracturing fluid. Sampling techniques thus far have consisted of collecting flowback fluids from wells and water impoundments and collecting core material from previous drilling expeditions. Furthermore, DNA extraction was performed on Marcellus shale sub-core with a MoBio PowerSoil kit to determine its efficiency. Assessment of the Marcellus shale indicates that it has low porosity and permeability that are not conducive to dense microbial populations; however, moderate temperatures and a natural fracture network may support a microbial community especially in zones where the Marcellus intersects more porous geologic formations. Also, hydraulic fracturing extends this fracture network providing more environments where microbial communities can exist. Previous research which collected flowback fluids has revealed a diverse microbial community that may be derived from hydrofrac fluid production or from the subsurface. DNA extraction from 10 g samples of Marcellus shale sub-core were unsuccessful even when samples were spiked with 8x108 cells/g of shale. This indicated that constituents of shale such as high levels of carbonates, humic acids and metals likely inhibited components of the PowerSoil kit. Future research is focused on refining sample collection and analyses to gain a full understanding of the microbiology of the Marcellus shale and associated flowback fluids. This includes the development of an in situ osmosampler, which will collect temporally relevant fluid and colonized substrate samples. The design of the osmosampler for hydraulic fracturing wells is being adapted from those used to sample marine environments. Furthermore, incubation experiments are underway to study interactions between microbial communities associated with hydraulic fracturing fluid and Marcellus shale samples. In conclusion, evidence suggests that the Marcellus shale is a possible component of the subsurface biosphere. Future studies will be valuable in determining the microbial community structure and function in relation to the geochemistry of the Marcellus shale and its future development as a natural gas resource.

Preservation of REE and Fe isotopes in altered stromatolites and the paleo-environmental record

NASA Astrophysics Data System (ADS)

Nies, S. M.; Shapiro, R. S.; Lalonde, S.

2015-12-01

Geochemical proxies are increasingly being used to unravel ancient ecosystems and environmental perturbations back to the earliest rock record on Earth. Along with more traditional fossils (stromatolites) and other biosignatures (e.g., lipids), the geochemical record is used specifically to evaluate biogenecity and to understand oxygenation of the atmosphere and ocean in the Archean and Paleoproterozoic. However, the effects of diagenesis, metamorphism, and other modes of secondary alteration are still poorly constrained, particularly as technological advances allow us to expand farther across the periodic table. Our study focused on the robustness and preservation of rare earth element (REE) and Fe isotope compositions of two stromatolitic units that have undergone contact and regional metamorphism. 18 samples were collected from cores, open pit mines, and field locations in Minnesota and Ontario from silicified iron formation (Biwabik-Gunflint formations). The samples were carefully constrained to one of two meter-scale stromatolitic units. Metamorphic grade ranged from essentially unmetamorphosed through prehnite-pumpellyite up to amphibolite (fayalite+hypersthene). Samples were also collected that represented deep secondary weathering, likely related to Cretaceous climatic extremes. Polished samples were first analyzed by electron microprobe and selected samples were further analyzed via laser ablation HR-ICP-MS to constrain trace element (n=13) and Fe isotopic variations (n=8). Preliminary results indicate that transition metal concentrations are surprisingly resilient to high-temperature metamorphic recrystallization. REE concentrations were analyzed in individual iron oxide grains, with full resolution (La to Lu) achieved for some samples and partial resolution (La to Nd) achieved for all samples. Core samples exhibited a relatively stable positive Ce anomaly occurring from low to extremely high alteration. Outcrop and mine samples indicate a shift from a negative Ce anomaly in less altered samples, to a positive Ce anomaly in highly altered samples. Collectively, our results imply that caution is warranted when making paleo-environmental inferences from samples with significantly different alteration histories.

Mount Elbert Gas Hydrate Stratigraphic Test Well, Alaska North Slope: Coring operations, core sedimentology, and lithostratigraphy

USGS Publications Warehouse

Rose, K.; Boswell, R.; Collett, T.

2011-01-01

In February 2007, BP Exploration (Alaska), the U.S. Department of Energy, and the U.S. Geological Survey completed the BPXA-DOE-USGS Mount Elbert Gas Hydrate Stratigraphic Test Well (Mount Elbert well) in the Milne Point Unit on the Alaska North Slope. The program achieved its primary goals of validating the pre-drill estimates of gas hydrate occurrence and thickness based on 3-D seismic interpretations and wireline log correlations and collecting a comprehensive suite of logging, coring, and pressure testing data. The upper section of the Mount Elbert well was drilled through the base of ice-bearing permafrost to a casing point of 594??m (1950??ft), approximately 15??m (50??ft) above the top of the targeted reservoir interval. The lower portion of the well was continuously cored from 606??m (1987??ft) to 760??m (2494??ft) and drilled to a total depth of 914??m. Ice-bearing permafrost extends to a depth of roughly 536??m and the base of gas hydrate stability is interpreted to extend to a depth of 870??m. Coring through the targeted gas hydrate bearing reservoirs was completed using a wireline-retrievable system. The coring program achieved 85% recovery of 7.6??cm (3??in) diameter core through 154??m (504??ft) of the hole. An onsite team processed the cores, collecting and preserving approximately 250 sub-samples for analyses of pore water geochemistry, microbiology, gas chemistry, petrophysical analysis, and thermal and physical properties. Eleven samples were immediately transferred to either methane-charged pressure vessels or liquid nitrogen for future study of the preserved gas hydrate. Additional offsite sampling, analyses, and detailed description of the cores were also conducted. Based on this work, one lithostratigraphic unit with eight subunits was identified across the cored interval. Subunits II and Va comprise the majority of the reservoir facies and are dominantly very fine to fine, moderately sorted, quartz, feldspar, and lithic fragment-bearing to -rich sands. Lithostratigraphic and palynologic data indicate that this section is most likely early Eocene to late Paleocene in age. The examined units contain evidence for both marine and non-marine lithofacies, and indications that the depositional environment for the reservoir facies may have been shallower marine than originally interpreted based on pre-drill wireline log interpretations. There is also evidence of reduced salinity marine conditions during deposition that may be related to the paleo-climate and depositional conditions during the early Eocene. ?? 2010.

Sea Ice as a Sink for CO2 and Biogeochemical Material: a Novel Sampling Method and Astrobiological Applications

NASA Astrophysics Data System (ADS)

Wilner, J.; Hofmann, A.; Hand, K. P.

2017-12-01

Accurately modelling the intensification of greenhouse gas effects in the polar regions ("polar amplification") necessitates a thorough understanding of the geochemical balance between atmospheric, sea ice, and oceanic layers. Sea ice is highly permeable to CO2 and therefore represents a major sink of oceanic CO2 in winter and of atmospheric CO2 in summer, sinks that are typically either poorly constrained in or fully absent from global climate models. We present a novel method for sampling both trapped and dissolved gases (CO2, CH4 and δ13CH4) in sea ice with a Picarro 2132-i Methane Analyzer, taking the following sampling considerations into account: minimization of water and air contamination, full headspace sampling, prevention of inadvertent sample bag double-puncturing, and ease of use. This method involves melting of vacuum-sealed ice cores to evacuate trapped gases to the headspace and sampling the headspace gas with a blunt needle sheathed by a beveled puncturing needle. A gravity catchment tube prevents input of dangerous levels of liquid water to the Picarro cavity. Subsequent ultrasonic degassing allows for dissolved gas measurement. We are in the process of using this method to sample gases trapped and dissolved in Arctic autumn sea ice cores and atmospheric samples collected during the 2016 Polarstern Expedition and during a May 2017 field campaign north of Barrow, Alaska. We additionally employ this method, together with inductively coupled plasma mass spectrometry (ICP-MS), to analyze the transfer of potential biogeochemical signatures of underlying hydrothermal plumes to sea ice. This has particular relevance to Europa and Enceladus, where hypothetical hydrothermal plumes may deliver seafloor chemicals to the overlying ice shell. Hence, we are presently investigating the entrainment of methane and other hydrothermal material in sea ice cores collected along the Gakkel Ridge that may serve as biosignatures of methanogenic organisms in seafloor oases analogous to icy ocean worlds.

Comparison of Three Biomass Sampling Techniques on Submersed Aquatic Plants in a Northern Tier Lake

DTIC Science & Technology

2010-07-01

distribution in 3 out of 14 species when comparing the box-core sampler and the rake method. These included forked duckweed (Lemna trisulca L, p...each site did not exhibit differences. These included coontail (p=0.2949), muskgrass (p=0.2746), American elodea (p=0.7622), forked duckweed (p...collected by the PVC-core sampler. These included coontail (p=0.000), chara (p=0.0219), American elodea (p=0.0061), forked duckweed (p=0.0000), najas (p

Geological Data Preservation Program Receives Bipartisan Support

NASA Astrophysics Data System (ADS)

Showstack, Randy

2014-09-01

More than 22 million vertical feet of geologic cores and cuttings fill the Kentucky Geological Survey's Well Sample and Core Library in Lexington. The materials are from at least 22,000 sites within Kentucky—including collections from oil and gas exploration operations, coal and other mining companies, highway construction projects, environmental studies, and federal facilities such as Fort Knox—and they are straining the 15-year-old facility to the point where there is no room to keep everything, according to geologist Patrick Gooding, the library manager.

Photonic-crystal fiber as a multifunctional optical sensor and sample collector.

PubMed

Konorov, Stanislav; Zheltikov, Aleksei; Scalora, Michael

2005-05-02

Two protocols of optical sensing realized with the same photonic-crystal fiber are compared. In the first protocol, diode-laser radiation is delivered to a sample through the central core of a dual-cladding photonic-crystal fiber with a diameter of a few micrometers, while the large-diameter fiber cladding serves to collect the fluorescent response from the sample and to guide it to a detector in the backward direction. In the second scheme, liquid sample is collected by a microcapillary array in the fiber cladding and is interrogated by laser radiation guided in the fiber modes. For sample fluids with refractive indices exceeding the refractive index of the fiber material, fluid channels in photonic-crystal fibers can guide laser light by total internal reflection, providing an 80% overlap of interrogating radiation with sample fluid.

A Taxometric Investigation of the Latent Structure of Worry: Dimensionality and Associations with Depression, Anxiety, and Stress

ERIC Educational Resources Information Center

Olatunji, Bunmi O.; Broman-Fulks, Joshua J.; Bergman, Shawn M.; Green, Bradley A.; Zlomke, Kimberly R.

2010-01-01

Worry has been described as a core feature of several disorders, particularly generalized anxiety disorder (GAD). The present study examined the latent structure of worry by applying 3 taxometric procedures (MAXEIG, MAMBAC, and L-Mode) to data collected from 2 large samples. Worry in the first sample (Study 1) of community participants (n = 1,355)…

Thermoresponsive electrospun fibers for water harvesting applications

NASA Astrophysics Data System (ADS)

Thakur, Neha; Baji, Avinash; Ranganath, Anupama Sargur

2018-03-01

Temperature triggered switchable cellulose acetate-poly(N-isopropylacrylamide) (CA-PNIPAM) core-shell and blend nanofibers are fabricated for controlled moisture harvesting applications. Core-shell fibers are fabricated using a co-axial electrospinning setup whereas the conventional electrospinning setup is employed for fabricating the blend fibers. Investigation of their wettability behaviour demonstrated that the blend fibers are superhydrophilic whereas the core-shell fibers are hydrophilic at ambient temperature. Furthermore, both the samples have an ability to switch between the two states viz. hydrophilic to hydrophobic state based on thermal stimulus. The core-shell fibers are shown to have higher moisture sorption ability compared to the blend fibers. This study investigates the mechanism behind the switchable wettability behaviour of the core-shell fibers and demonstrates the crucial role played by the functional groups present on the surface layer of fibers in governing their moisture collection efficiency.

Genetic Diversity Strategy for the Management and Use of Rubber Genetic Resources: More than 1,000 Wild and Cultivated Accessions in a 100-Genotype Core Collection

PubMed Central

Cerqueira-Silva, Carlos Bernardo Moreno; Silva, Carla Cristina; Mantello, Camila Campos; Conson, Andre Ricardo Oliveira; Vianna, João Paulo Gomes; Zucchi, Maria Imaculada; Scaloppi Junior, Erivaldo José; Fialho, Josefino de Freitas; de Moraes, Mario Luis Teixeira; Gonçalves, Paulo de Souza; de Souza, Anete Pereira

2015-01-01

The rubber tree [Hevea brasiliensis (Willd. ex Adr. de Juss.) Muell. Arg.] is the only plant species worldwide that is cultivated for the commercial production of natural rubber. This study describes the genetic diversity of the Hevea spp. complex that is available in the main ex situ collections of South America, including Amazonian populations that have never been previously described. Genetic data were analyzed to determine the genetic structure of the wild populations, quantify the allelic diversity and suggest the composition of a core collection to capture the maximum genetic diversity within a minimal sample size. A total of 1,117 accessions were genotyped with 13 microsatellite markers. We identified a total of 408 alleles, 319 of which were shared between groups and 89 that were private in different groups of accessions. In a population structure and principal component analysis, the level of clustering reflected a primary division into the following two subgroups: cluster 1, which consisted of varieties from the advanced breeding germplasm that originated from the Wickham and Mato Grosso accessions; and cluster 2, which consisted of the wild germplasm from the Acre, Amazonas, Pará and Rondônia populations and Hevea spp. The analyses revealed a high frequency of gene flow between the groups, with the genetic differentiation coefficient (GST) estimated to be 0.018. Additionally, no distinct separation among the H. brasiliensis accessions and the other species from Amazonas was observed. A core collection of 99 accessions was identified that captured the maximum genetic diversity. Rubber tree breeders can effectively utilize this core collection for cultivar improvement. Furthermore, such a core collection could provide resources for forming an association panel to evaluate traits with agronomic and commercial importance. Our study generated a molecular database that should facilitate the management of the Hevea germplasm and its use for subsequent genetic and genomic breeding. PMID:26225861

Harpoon-based sample Acquisition System

NASA Astrophysics Data System (ADS)

Bernal, Javier; Nuth, Joseph; Wegel, Donald

2012-02-01

Acquiring information about the composition of comets, asteroids, and other near Earth objects is very important because they may contain the primordial ooze of the solar system and the origins of life on Earth. Sending a spacecraft is the obvious answer, but once it gets there it needs to collect and analyze samples. Conceptually, a drill or a shovel would work, but both require something extra to anchor it to the comet, adding to the cost and complexity of the spacecraft. Since comets and asteroids are very low gravity objects, drilling becomes a problem. If you do not provide a grappling mechanism, the drill would push the spacecraft off the surface. Harpoons have been proposed as grappling mechanisms in the past and are currently flying on missions such as ROSETTA. We propose to use a hollow, core sampling harpoon, to act as the anchoring mechanism as well as the sample collecting device. By combining these two functions, mass is reduced, more samples can be collected and the spacecraft can carry more propellant. Although challenging, returning the collected samples to Earth allows them to be analyzed in laboratories with much greater detail than possible on a spacecraft. Also, bringing the samples back to Earth allows future generations to study them.

Data on sediment quality and concentrations of polychlorinated biphenyls from the Lower Neponset River, Massachusetts, 2002-03

USGS Publications Warehouse

Breault, Robert F.; Cooke, Matthew G.; Merrill, Michael

2004-01-01

The U.S. Geological Survey, in cooperation with the Massachusetts Executive Office of Environmental Affairs Department of Fish and Game Riverways Program, and the U.S. Environmental Protection Agency, studied sediment and water quality in the lower Neponset River, which is a tributary to Boston Harbor. Grab and core samples of sediment were tested for elements and organic compounds including polyaromatic hydrocarbons, organochlorine pesticides, and polychlorinated biphenyls. Physical properties of sediment samples, including grain size, were also measured. Selected sediment-core samples were tested for reactive sulfides and metals by means of the toxicity characteristic leaching procedure, which are sediment-disposal-related tests. Water quality, with respect to polychlorinated biphenyl contamination, was determined by testing samples collected by PISCES passive-water-column samplers for polychlorinated biphenyl congeners. Total concentrations of polychlorinated biphenyls were calculated by congener and by Aroclor.

Alteration of Basalt and Hyaloclastite in the Project Hotspot MHC-2 Core with Some Comparison to Hyaloclastites of the Hawaii Scientific Drilling Program #2 (HSDP) Core

NASA Astrophysics Data System (ADS)

Walton, A. W.; Walker, J. R.

2015-12-01

Project Hotspot's 1821m coring operation at Mountain Home Air Force Base, Idaho (MHC), sought to examine interaction of hotspot magmas with continental crust and evaluate geothermal resources. Subsurface temperature increased at a gradient of 76˚/km. Alteration was uniform and not intense over the upper part of the core and at the bottom, but differed markedly in an anomalous zone (AZ) from 1700 to 1800m. The MHC core contains diatomite, basalt lava and minor hyaloclastite. Olivine (Ol) in lavas is more-or-less altered to iddingsite. Plagioclase (Plag) has altered to smectite along cleavage planes and fractures except in the AZ, where it is intensely altered to corrensite. Clinopyroxene (CPX, pinkish in thin section) is little altered, as are apatite and opaque minerals (probably ilmenite with magnetite or pyrite in different samples). Interstitial material is converted to smectite or, in the AZ, to corrensite. Phyllosilicate lines vesicles, and calcite, zeolite and phyllosilicate fill them. Pore-lining phillipsite is common shallow in the core, with vesicle-filling analcime and heulandite at greater depth. A fibrous zeolite, probably stilbite, is also present. Hyaloclasts are altered to concentrically layered masses of smectite. MHC hyaloclastites do not display the microbial traces and palagonite ("gel-palagonite") alteration common in Hawaii Scientific Drilling Project #2 (HSDP) samples. HSDP samples do contain pore-lining phillipsite, but pore fillings are chabazite. Calcite is absent in HSDP hyaloclastites. Neither Ol nor Plag were altered in HSDP hyaloclastites. HSPD glasses are less silicic and Ti-rich than MHC lavas, containing Ol rather than CPX as a dominant mafic. However the differences in alteration of hyaloclastites probably reflect either the fact that the HSDP core was collected at temperatures equivalent to those at the top of the MHC-2 core or HSDP samples were from beds that were in modified marine pore water, rather than continental waters.

Characterization of Gas and Particle Emissions from Laboratory Burns of Peat

EPA Science Inventory

Peat cores collected from two locations in eastern North Carolina (NC, USA) were burned in a laboratory facility to characterize emissions during simulated field combustion. Particle and gas samples were analyzed to quantify emission factors for particulate matter (PM2.5), organi...

PRB CHEMISTRY CASE STUDY: DENVER FEDERAL CENTER

EPA Science Inventory

The Denver Federal Center permeable reactive barrier is a funnel-and-gate system with four reactive gates, each separated by up to about 120 m of metal sheet pile. In this study, ground water sampling, core collection, and solid phase characterization studies were carried out in...

Sedimentologic characteristics of recent washover deposits from Assateague Island, Maryland

USGS Publications Warehouse

Bernier, Julie C.; Zaremba, Nicholas J.; Wheaton, Cathryn J.; Ellis, Alisha M.; Marot, Marci E.; Smith, Christopher G.

2016-06-08

This report describes sediment data collected using sand augers in active overwash zones on Assateague Island in Maryland. Samples were collected by the U.S. Geological Survey (USGS) during two surveys in March/April and October 2014 (USGS Field Activity Numbers [FAN] 2014-301-FA and 2014-322-FA, respectively). The physical characteristics (for example, sediment texture or bedding structure) of and spatial differences among these deposits will provide information about overwash processes and sediment transport from the sandy barrier-island reaches to the back-barrier environments. Metrics derived from these data, such as mean grain size or deposit thicknesses, can be used to ground-truth remote sensing and geophysical data and can also be incorporated into sediment transport models. Data products, including sample location tables, descriptive core logs, core photographs and x-radiographs, the results of sediment grain-size analyses, and Geographic Information System (GIS) data files with accompanying formal Federal Geographic Data Committee (FGDC) metadata can be downloaded from the Data Downloads page.

Neogene sea surface temperature reconstructions from the Southern McMurdo Sound and the McMurdo Ice Shelf (ANDRILL Program, Antarctica)

NASA Astrophysics Data System (ADS)

Sangiorgi, Francesca; Willmott, Veronica; Kim, Jung-Hyun; Schouten, Stefan; Brinkhuis, Henk; Sinninghe Damsté, Jaap S.; Florindo, Fabio; Harwood, David; Naish, Tim; Powell, Ross

2010-05-01

During the austral summers 2006 and 2007 the ANtarctic DRILLing Program (ANDRILL) drilled two cores, each recovering more than 1000m of sediment from below the McMurdo Ice-Shelf (MIS, AND-1B), and sea-ice in Southern McMurdo Sound (SMS, AND-2A), respectively, revealing new information about Neogene Antarctic cryosphere evolution. Core AND-1B was drilled in a more distal location than core AND-2A. With the aim of obtaining important information for the understanding of the history of Antarctic climate and environment during selected interval of the Neogene, we applied novel organic geochemistry proxies such as TEX86 (Tetra Ether IndeX of lipids with 86 carbon atoms) using a new calibration equation specifically developed for polar areas and based on 116 surface sediment samples collected from polar oceans (Kim et al., subm.), and BIT (Branched and Isoprenoid Tetraether), to derive absolute (sea surface) temperature values and to evaluate the relative contribution of soil organic matter versus marine organic matter, respectively. We will present the state-of-the-art of the methodology applied, discussing its advantages and limitations, and the results so far obtained from the analysis of 60 samples from core AND-2A covering the Miocene Climatic Optimum (and the Mid-late Miocene transition) and of 20 pilot samples from core AND-1B covering the late Pliocene.

Comparison of Three Different Hepatitis C Virus Genotyping Methods: 5'NCR PCR-RFLP, Core Type-Specific PCR, and NS5b Sequencing in a Tertiary Care Hospital in South India.

PubMed

Daniel, Hubert D-J; David, Joel; Raghuraman, Sukanya; Gnanamony, Manu; Chandy, George M; Sridharan, Gopalan; Abraham, Priya

2017-05-01

Based on genetic heterogeneity, hepatitis C virus (HCV) is classified into seven major genotypes and 64 subtypes. In spite of the sequence heterogeneity, all genotypes share an identical complement of colinear genes within the large open reading frame. The genetic interrelationships between these genes are consistent among genotypes. Due to this property, complete sequencing of the HCV genome is not required. HCV genotypes along with subtypes are critical for planning antiviral therapy. Certain genotypes are also associated with higher progression to liver cirrhosis. In this study, 100 blood samples were collected from individuals who came for routine HCV genotype identification. These samples were used for the comparison of two different genotyping methods (5'NCR PCR-RFLP and HCV core type-specific PCR) with NS5b sequencing. Of the 100 samples genotyped using 5'NCR PCR-RFLP and HCV core type-specific PCR, 90% (κ = 0.913, P < 0.00) and 96% (κ = 0.794, P < 0.00) correlated with NS5b sequencing, respectively. Sixty percent and 75% of discordant samples by 5'NCR PCR-RFLP and HCV core type-specific PCR, respectively, belonged to genotype 6. All the HCV genotype 1 subtypes were classified accurately by both the methods. This study shows that the 5'NCR-based PCR-RFLP and the HCV core type-specific PCR-based assays correctly identified HCV genotypes except genotype 6 from this region. Direct sequencing of the HCV core region was able to identify all the genotype 6 from this region and serves as an alternative to NS5b sequencing. © 2016 Wiley Periodicals, Inc.

Core-shifts and proper-motion constraints in the S5 polar cap sample at the 15 and 43 GHz bands

NASA Astrophysics Data System (ADS)

Abellán, F. J.; Martí-Vidal, I.; Marcaide, J. M.; Guirado, J. C.

2018-06-01

We have studied a complete radio sample of active galactic nuclei with the very-long-baseline-interferometry (VLBI) technique and for the first time successfully obtained high-precision phase-delay astrometry at Q band (43 GHz) from observations acquired in 2010. We have compared our astrometric results with those obtained with the same technique at U band (15 GHz) from data collected in 2000. The differences in source separations among all the source pairs observed in common at the two epochs are compatible at the 1σ level between U and Q bands. With the benefit of quasi-simultaneous U and Q band observations in 2010, we have studied chromatic effects (core-shift) at the radio source cores with three different methods. The magnitudes of the core-shifts are of the same order (about 0.1 mas) for all methods. However, some discrepancies arise in the orientation of the core-shifts determined through the different methods. In some cases these discrepancies are due to insufficient signal for the method used. In others, the discrepancies reflect assumptions of the methods and could be explained by curvatures in the jets and departures from conical jets.

Identifying water-quality trends in the Trinity River, Texas, USA, 1969-1992, using sediment cores from Lake Livingston

USGS Publications Warehouse

Van Metre, P.C.; Callender, E.

1996-01-01

Chemical analyses were done on cores of bottom sediment from three locations in Lake Livingston, a reservoir on the Trinity River in east Texas to identify trends in water quality in the Trinity River using the chemical record preserved in bottom sediments trapped by the reservoir. Sediment cores spanned the period from 1969, when the reservoir was impounded, to 1992, when the cores were collected. Chemical concentrations in reservoir sediment samples were compared to concentrations for 14 streambed sediment samples from the Trinity River Basin and to reported concentrations for soils in the eastern United States and shale. These comparisons indicate that sediments deposited in Lake Livingston are representative of the environmental setting of Lake Livingston within the Trinity River Basin. Vertical changes in concentrations within sediment cores indicate temporal trends of decreasing concentrations of lead, sodium, barium, and total DDT (DDT plus its metabolites DDD and DDE) in the Trinity River. Possible increasing temporal trends are indicated for chlordane and dieldrin. Each sediment-derived trend is related to trends in water quality in the Trinity River or known changes in environmental factors in its drainage basin or both.

Porosity characterization for heterogeneous shales using integrated multiscale microscopy

NASA Astrophysics Data System (ADS)

Rassouli, F.; Andrew, M.; Zoback, M. D.

2016-12-01

Pore size distribution analysis plays a critical role in gas storage capacity and fluid transport characterization of shales. Study of the diverse distribution of pore size and structure in such low permeably rocks is withheld by the lack of tools to visualize the microstructural properties of shale rocks. In this paper we try to use multiple techniques to investigate the full pore size range in different sample scales. Modern imaging techniques are combined with routine analytical investigations (x-ray diffraction, thin section analysis and mercury porosimetry) to describe pore size distribution of shale samples from Haynesville formation in East Texas to generate a more holistic understanding of the porosity structure in shales, ranging from standard core plug down to nm scales. Standard 1" diameter core plug samples were first imaged using a Versa 3D x-ray microscope at lower resolutions. Then we pick several regions of interest (ROIs) with various micro-features (such as micro-cracks and high organic matters) in the rock samples to run higher resolution CT scans using a non-destructive interior tomography scans. After this step, we cut the samples and drill 5 mm diameter cores out of the selected ROIs. Then we rescan the samples to measure porosity distribution of the 5 mm cores. We repeat this step for samples with diameter of 1 mm being cut out of the 5 mm cores using a laser cutting machine. After comparing the pore structure and distribution of the samples measured form micro-CT analysis, we move to nano-scale imaging to capture the ultra-fine pores within the shale samples. At this stage, the diameter of the 1 mm samples will be milled down to 70 microns using the laser beam. We scan these samples in a nano-CT Ultra x-ray microscope and calculate the porosity of the samples by image segmentation methods. Finally, we use images collected from focused ion beam scanning electron microscopy (FIB-SEM) to be able to compare the results of porosity measurements from all different imaging techniques. These multi-scale characterization techniques are then compared with traditional analytical techniques such as Mercury Porosimetry.

Chlorine-36 and cesium-137 in ice-core samples from mid-latitude glacial sites in the Northern Hemisphere

USGS Publications Warehouse

Green, J.R.; Cecil, L.D.; Synal, H.-A.; Kreutz, K.J.; Wake, C.P.; Naftz, D.L.; Frape, S.K.

2000-01-01

Chlorine-36 (36Cl) concentrations, 36Cl/Cl ratios, and 36Cl fluxes in ice-core samples collected from the Upper Fremont Glacier (UFG) in the Wind River Mountain Range, Wyoming, United States and the Nangpai Gosum Glacier (NGG) in the Himalayan Mountains, Nepal, were determined and compared with published results from the Dye-3 ice-core drilling site on the Greenland Ice Sheet. Cesium-137 (137Cs) concentrations in the NGG also were determined. The background fluxes for 36Cl for each glacial site were similar: (1.6??0.3)??10-2 atoms/cm2 s for the UFG samples, (0.7??0.1)??10-2 atoms/cm2 s for the NGG samples, and (0.4??0.1)??10-2 atoms/cm2 s for the Dye-3 samples. The 36Cl fluxes in ice that was deposited as snow during peak atmospheric nuclear weapon test (1957-1958) were (33??1)??10-2 atoms/cm2 s for the UFG site, (291??3)??10-2 atoms/cm2 s for the NGG site, and (124??5)??10-2 atoms/ cm2 s for the Dye-3 site. A weapon test period 137Cs concentration of 0.79??0.05 Bq/kg in the NGG ice core also was detected in the same section of ice that contained the largest 36Cl concentration. ?? 2000 Elsevier Science B.V. All rights reserved.

An Ice Core Melter System for Continuous Major and Trace Chemical Analyses of a New Mt. Logan Summit Ice Core

NASA Astrophysics Data System (ADS)

Osterberg, E. C.; Handley, M. J.; Sneed, S. D.; Mayewski, P. A.; Kreutz, K. J.; Fisher, D. A.

2004-12-01

The ice core melter system at the University of Maine Climate Change Institute has been recently modified and updated to allow high-resolution (<1-2 cm ice/sample), continuous and coregistered sampling of ice cores, most notably the 2001 Mt. Logan summit ice core (187 m to bedrock), for analyses of 34 trace elements (Sr, Cd, Sb, Cs, Ba, Pb, Bi, U, As, Al, S, Ca, Ti, V, Cr, Mn, Fe, Co, Cu, Zn, REE suite) by inductively coupled plasma mass spectrometry (ICP-MS), 8 major ions (Na+, Ca2+, Mg2+, K+, Cl-, SO42-, NO3-, MSA) by ion chromatography (IC), stable water isotopes (δ 18O, δ D, d) and volcanic tephra. The UMaine continuous melter (UMCoM) system is housed in a dedicated clean room with HEPA filtered air. Standard clean room procedures are employed during melting. A Wagenbach-style continuous melter system has been modified to include a pure Nickel melthead that can be easily dismantled for thorough cleaning. The system allows melting of both ice and firn without wicking of the meltwater into unmelted core. Contrary to ice core melter systems in which the meltwater is directly channeled to online instruments for continuous flow analyses, the UMCoM system collects discrete samples for each chemical analysis under ultraclean conditions. Meltwater from the pristine innermost section of the ice core is split between one fraction collector that accumulates ICP-MS samples in acid pre-cleaned polypropylene vials under a class-100 HEPA clean bench, and a second fraction collector that accumulates IC samples. A third fraction collector accumulates isotope and tephra samples from the potentially contaminated outer portion of the core. This method is advantageous because an archive of each sample remains for subsequent analyses (including trace element isotope ratios), and ICP-MS analytes are scanned for longer intervals and in replicate. Method detection limits, calculated from de-ionized water blanks passed through the entire UMCoM system, are below 10% of average Mt. Logan values. A strong correlation (R2>0.9) between Ca and S concentrations measured on different fractions of the same sample by IC and ICP-MS validates sample coregistration. Preliminary analyses of data from the 2001 Mt. Logan summit ice core confirm subannual resolution sampling and annual scale variability of major and trace elements. Accumulation rate models and isotope data suggest that annual resolution will be possible to 1000-2000 y.b.p., with multi-annual to centennial resolution for the remainder of the Holocene and possibly including the last deglaciation. Dust proxy elements, including REEs, strongly co-vary in time-series and reveal concentration ratio fluctuations interpreted as source region changes. Volcanic eruptions are characterized by elevated concentrations of S, SO42-, Cu, Sb, Zn and other trace elements. Concentrations of potential anthropogenic contaminants are also discussed.

Temporal changes of environmental impact in the coastal marine area in front of a former mining zone, detected by means of benthic foraminifera

NASA Astrophysics Data System (ADS)

Romano, Elena; Bergamin, Luisa; Maggi, Chiara; Ausili, Antonella

2016-04-01

Benthic foraminifera are increasingly used to assess environmental quality of present and past marine environments. They are suitable for the study of ancient environments because their hard and small shells are preserved and abundant in sediment and an adequate number of them can be collected by small samples of sediment cores, supplying reliable data for a statistical approach. The study of foraminiferal assemblages, associated to sediment abiotic parameters, allows to define the anthropogenic impact along the time; reference conditions may be recognized in deep uncontaminated levels. The Sulcis Iglesiente Guspinese area (SW Sardinia, Italy) was affected in past times by intensive mining, which started in mid 19th century and ceased in 1990s. The marine area of Cala Domestica is located few kilometers from the mining district, where mainly galena and sphalerite were exploited. The area houses buildings for storage of minerals receives drainage material from mineral dumps determining a strong enrichment for several metals in the coastal sediments. Sediment core SI/69 was collected by means of vibrocorer in front of Cala Domestica beach, during a vast sampling survey aimed to environmental characterization of marine sediments. The core was subsampled in the laboratory, and a total of 28 levels were collected. Microfaunal, grain size and chemical (As, Ba, Cd, Cr, Cu, Fe, Hg, Mn, Ni, Pb, Zn) analyses were carried out on different aliquots of the same level. The quantitative analysis on benthic foraminifera was based on the count of at least 300 specimens per sample. Faunal parameters such as Foraminiferal Number (FN i.e. number of specimens / 1 g dry sediment) and species diversity (- index and H-index) were considered as potential indicators of environmental status. Principal Component Analysis (PCA) showed a group of strongly correlated metals (Ba, Cd, Cu, Hg, Mn, Pb and Zn), associated to the superficial samples. These elements displayed a typical profile along core depth, characterized by low steady concentration in the lower part of the core, and increased values in the upper 20 cm. This pattern, which displays for most elements the highest concentrations in the top level, may be considered as influenced by anthropogenic enrichment. Quantitative faunal data were compared with concentrations by means of Canonical Correspondence Analysis (CCA) to highlight the effects of contamination on biota. It highlighted the pollution-tolerant character of some foraminiferal species, which are nearly exclusively present in the upper 20 cm core interval. Moreover, CCA demonstrated that FN was negatively affected by the anthropogenically enriched metals. Foraminiferal assemblages do not show major changes along core depth and high species diversity would suggest, in general, a good environmental status through time. Nevertheless, the comparison of assemblages from the contaminated upper core interval with reference conditions of the pre impacted interval, reveals that heavy metal pollution determined the increase of the pollution-tolerant taxa and a great decrease of foraminiferal abundance. Consequently, a comprehensive degradation of the ecological status referable to mining activity and dumping was recognized in this study.

Characterization of basin concrete in support of structural integrity demonstration for extended storage

DOE Office of Scientific and Technical Information (OSTI.GOV)

Duncan, A.

Concrete core samples from C basin were characterized through material testing and analysis to verify the design inputs for structural analysis of the L Basin and to evaluate the type and extent of changes in the material condition of the concrete under extended service for fuel storage. To avoid the impact on operations, core samples were not collected from L area, but rather, several concrete core samples were taken from the C Basin prior to its closure. C basin was selected due to its similar environmental exposure and service history compared to L Basin. The microstructure and chemical composition ofmore » the concrete exposed to the water was profiled from the water surface into the wall to evaluate the impact and extent of exposure. No significant leaching of concrete components was observed. Ingress of carbonation or deleterious species was determined to be insignificant. No evidence of alkali-silica reactions (ASR) was observed. Ettringite was observed to form throughout the structure (in air voids or pores); however, the sulfur content was measured to be consistent with the initial concrete that was used to construct the facility. Similar ettringite trends were observed in the interior segments of the core samples. The compressive strength of the concrete at the mid-wall of the basin was measured, and similar microstructural analysis was conducted on these materials post compression testing. The microstructure was determined to be similar to near-surface segments of the core samples. The average strength was 4148 psi, which is well-above the design strength of 2500 psi. The analyses showed that phase alterations and minor cracking in a microstructure did not affect the design specification for the concrete.« less

Mutagen Sensitivity, Apoptosis, and Polymorphism in DNA Repair as Measures of Prostate Cancer Risk

DTIC Science & Technology

2005-02-01

blood tubes are immediately refrigerated and delivered on ice within 6 hours to the GCRC core facility at Georgetown University for processing . Case...is CLIA certified. There is a centrally monitored storage facility with -80’C freezers. The established recruitment and optimized sample processing in...controls. We have established the recruitment procedures, sample collection, processing , repository, and data management. This is a substantial effort

Ambient changes in tracer concentrations from a multilevel monitoring system in Basalt

USGS Publications Warehouse

Bartholomay, Roy C.; Twining, Brian V.; Rose, Peter E.

2014-01-01

Starting in 2008, a 4-year tracer study was conducted to evaluate ambient changes in groundwater concentrations of a 1,3,6-naphthalene trisulfonate tracer that was added to drill water. Samples were collected under open borehole conditions and after installing a multilevel groundwater monitoring system completed with 11 discrete monitoring zones within dense and fractured basalt and sediment layers in the eastern Snake River aquifer. The study was done in cooperation with the U.S. Department of Energy to test whether ambient fracture flow conditions were sufficient to remove the effects of injected drill water prior to sample collection. Results from thief samples indicated that the tracer was present in minor concentrations 28 days after coring, but was not present 6 months after coring or 7 days after reaming the borehole. Results from sampling the multilevel monitoring system indicated that small concentrations of the tracer remained in 5 of 10 zones during some period after installation. All concentrations were several orders of magnitude lower than the initial concentrations in the drill water. The ports that had remnant concentrations of the tracer were either located near sediment layers or were located in dense basalt, which suggests limited groundwater flow near these ports. The ports completed in well-fractured and vesicular basalt had no detectable concentrations.

Diversity of bacteria in surface ice of Austre Lovénbreen glacier, Svalbard.

PubMed

Zeng, Yin-Xin; Yan, Ming; Yu, Yong; Li, Hui-Rong; He, Jian-Feng; Sun, Kun; Zhang, Fang

2013-05-01

Two 16S rRNA gene clone libraries Cores 1U and 2U were constructed using two ice core samples collected from Austre Lovénbreen glacier in Svalbard. The two libraries yielded a total of 262 clones belonging to 59 phylotypes. Sequences fell into 10 major lineages of the domain Bacteria, including Proteobacteria (alpha, beta, gamma and delta subdivisions), Bacteroidetes, Actinobacteria, Firmicutes, Acidobacteria, Deinococcus-Thermus, Chloroflexi, Planctomycetes, Cyanobacteria and candidate division TM7. Among them, Bacteroidetes, Actinobacteria, Alphaproteobacteria and Cyanobacteria were most abundant. UniFrac data showed no significant differences in community composition between the two ice cores. A total of nineteen bacterial strains from the genera Pseudoalteromonas and Psychrobacter were isolated from the ice cores. Phylogenetic and phenotypic analyses revealed a close relationship between the ice core isolates and bacteria in marine environments, indicating a wide distribution of some bacterial phylotypes in both terrestrial and marine ecosystems.

AirCore-HR: a high-resolution column sampling to enhance the vertical description of CH4 and CO2

NASA Astrophysics Data System (ADS)

Membrive, Olivier; Crevoisier, Cyril; Sweeney, Colm; Danis, François; Hertzog, Albert; Engel, Andreas; Bönisch, Harald; Picon, Laurence

2017-06-01

An original and innovative sampling system called AirCore was presented by NOAA in 2010 Karion et al.(2010). It consists of a long ( > 100 m) and narrow ( < 1 cm) stainless steel tube that can retain a profile of atmospheric air. The captured air sample has then to be analyzed with a gas analyzer for trace mole fraction. In this study, we introduce a new AirCore aiming to improve resolution along the vertical with the objectives to (i) better capture the vertical distribution of CO2 and CH4, (ii) provide a tool to compare AirCores and validate the estimated vertical resolution achieved by AirCores. This (high-resolution) AirCore-HR consists of a 300 m tube, combining 200 m of 0.125 in. (3.175 mm) tube and a 100 m of 0.25 in. (6.35 mm) tube. This new configuration allows us to achieve a vertical resolution of 300 m up to 15 km and better than 500 m up to 22 km (if analysis of the retained sample is performed within 3 h). The AirCore-HR was flown for the first time during the annual StratoScience campaign from CNES in August 2014 from Timmins (Ontario, Canada). High-resolution vertical profiles of CO2 and CH4 up to 25 km were successfully retrieved. These profiles revealed well-defined transport structures in the troposphere (also seen in CAMS-ECMWF high-resolution forecasts of CO2 and CH4 profiles) and captured the decrease of CO2 and CH4 in the stratosphere. The multi-instrument gondola also carried two other low-resolution AirCore-GUF that allowed us to perform direct comparisons and study the underlying processing method used to convert the sample of air to greenhouse gases vertical profiles. In particular, degrading the AirCore-HR derived profiles to the low resolution of AirCore-GUF yields an excellent match between both sets of CH4 profiles and shows a good consistency in terms of vertical structures. This fully validates the theoretical vertical resolution achievable by AirCores. Concerning CO2 although a good agreement is found in terms of vertical structure, the comparison between the various AirCores yields a large and variable bias (up to almost 3 ppm in some parts of the profiles). The reasons of this bias, possibly related to the drying agent used to dry the air, are still being investigated. Finally, the uncertainties associated with the measurements are assessed, yielding an average uncertainty below 3 ppb for CH4 and 0.25 ppm for CO2 with the major source of uncertainty coming from the potential loss of air sample on the ground and the choice of the starting and ending point of the collected air sample inside the tube. In an ideal case where the sample would be fully retained, it would be possible to know precisely the pressure at which air was sampled last and thus to improve the overall uncertainty to about 0.1 ppm for CO2 and 2 ppb for CH4.

Methods for pore water extraction from unsaturated zone tuff, Yucca Mountain, Nevada

USGS Publications Warehouse

Scofield, K.M.

2006-01-01

Assessing the performance of the proposed high-level radioactive waste repository at Yucca Mountain, Nevada, requires an understanding of the chemistry of the water that moves through the host rock. The uniaxial compression method used to extract pore water from samples of tuffaceous borehole core was successful only for nonwelded tuff. An ultracentrifugation method was adopted to extract pore water from samples of the densely welded tuff of the proposed repository horizon. Tests were performed using both methods to determine the efficiency of pore water extraction and the potential effects on pore water chemistry. Test results indicate that uniaxial compression is most efficient for extracting pore water from nonwelded tuff, while ultracentrifugation is more successful in extracting pore water from densely welded tuff. Pore water splits collected from a single nonwelded tuff core during uniaxial compression tests have shown changes in pore water chemistry with increasing pressure for calcium, chloride, sulfate, and nitrate. Pore water samples collected from the intermediate pressure ranges should prevent the influence of re-dissolved, evaporative salts and the addition of ion-deficient water from clays and zeolites. Chemistry of pore water splits from welded and nonwelded tuffs using ultracentrifugation indicates that there is no substantial fractionation of solutes.

Phytoscreening for chlorinated solvents using rapid in vitro SPME sampling: Application to urban plume in Verl, Germany

USGS Publications Warehouse

Limmer, M.A.; Balouet, J.-C.; Karg, F.; Vroblesky, D.A.; Burken, J.G.

2011-01-01

Rapid detection and delineation of contaminants in urban settings is critically important in protecting human health. Cores from trees growing above a plume of contaminated groundwater in Verl, Germany, were collected in 1 day, with subsequent analysis and plume mapping completed over several days. Solid-phase microextraction (SPME) analysis was applied to detect tetrachloroethene (PCE) and trichloroethene (TCE) to below nanogram/liter levels in the transpiration stream of the trees. The tree core concentrations showed a clear areal correlation to the distribution of PCE and TCE in the groundwater. Concentrations in tree cores were lower than the underlying groundwater, as anticipated; however, the tree core water retained the PCE:TCE signature of the underlying groundwater in the urban, populated area. The PCE:TCE ratio can indicate areas of differing degradation activity. Therefore, the phytoscreening analysis was capable not only of mapping the spatial distribution of groundwater contamination but also of delineating zones of potentially differing contaminant sources and degradation. The simplicity of tree coring and the ability to collect a large number of samples in a day with minimal disruption or property damage in the urban setting demonstrates that phytoscreening can be a powerful tool for gaining reconnaissance-level information on groundwater contaminated by chlorinated solvents. The use of SPME decreases the detection level considerably and increases the sensitivity of phytoscreening as an assessment, monitoring, and phytoforensic tool. With rapid, inexpensive, and noninvasive methods of detecting and delineating contaminants underlying homes, as in this case, human health can be better protected through screening of broader areas and with far faster response times. ?? 2011 American Chemical Society.

Digitally available interval-specific rock-sample data compiled from historical records, Nevada National Security Site and vicinity, Nye County, Nevada

USGS Publications Warehouse

Wood, David B.

2007-11-01

Between 1951 and 1992, 828 underground tests were conducted on the Nevada National Security Site, Nye County, Nevada. Prior to and following these nuclear tests, holes were drilled and mined to collect rock samples. These samples are organized and stored by depth of borehole or drift at the U.S. Geological Survey Core Library and Data Center at Mercury, Nevada, on the Nevada National Security Site. From these rock samples, rock properties were analyzed and interpreted and compiled into project files and in published reports that are maintained at the Core Library and at the U.S. Geological Survey office in Henderson, Nevada. These rock-sample data include lithologic descriptions, physical and mechanical properties, and fracture characteristics. Hydraulic properties also were compiled from holes completed in the water table. Rock samples are irreplaceable because pre-test, in-place conditions cannot be recreated and samples can not be recollected from the many holes destroyed by testing. Documenting these data in a published report will ensure availability for future investigators.

Solid-phase data from cores at the proposed Dewey Burdock uranium in-situ recovery mine, near Edgemont, South Dakota

USGS Publications Warehouse

Johnson, Raymond H.; Diehl, Sharon F.; Benzel, William M.

2013-01-01

This report releases solid-phase data from cores at the proposed Dewey Burdock uranium in-situ recovery site near Edgemont, South Dakota. These cores were collected by Powertech Uranium Corporation, and material not used for their analyses were given to the U.S. Geological Survey for additional sampling and analyses. These additional analyses included total carbon and sulfur, whole rock acid digestion for major and trace elements, 234U/238U activity ratios, X-ray diffraction, thin sections, scanning electron microscopy analyses, and cathodoluminescence. This report provides the methods and data results from these analyses along with a short summary of observations.

Significance of pregnancy test false negative results due to elevated levels of β-core fragment hCG.

PubMed

Johnson, Sarah; Eapen, Saji; Smith, Peter; Warren, Graham; Zinaman, Michael

2017-01-01

Very high levels of β-core fragment human chorionic gonadotrophin (βcf-hCG) are reported to potentially cause false negative results in point-of-care (POC)/over-the-counter (OTC) pregnancy tests. To investigate this further, women's daily early morning urine samples, collected prior to conception and during pregnancy, were analysed for intact, free β-, and βcf-hCG. The proportion of βcf-hCG was found to be related to that of hCG produced and in circulation. Therefore, best practice for accuracy testing of POC/OTC pregnancy tests would be to test devices against clinical samples containing high levels of βcf-hCG as well as standards spiked with biologically relevant ratios.

Modern benthic foraminifer distribution in the Amerasian Basin, Arctic Ocean

USGS Publications Warehouse

Ishman, S.E.; Foley, K.M.

1996-01-01

A total of 38 box cores were collected from the Amerasian Basin, Arctic Ocean during the U.S. Geological Survey 1992 (PI92-AR) and 1993 (PI93-AR) Arctic Cruises aboard the U.S. Coast Guard Icebreaker Polar Star. In addition, the cruises collected geophysical data, piston cores and hydrographic data to address the geologic and oceanographic history of the western Arctic Ocean. This paper reports the results of the quantitative analyses of benthic foraminifer distribution data of the total (live + dead) assemblages derived from 22 box core-top samples. The results show that a distinct depth distribution of three dominant benthic foraminifer assemblages, the Textularia spp. - Spiroplectammina biformis, Cassidulina teretis and Oridorsalis tener - Eponides tumidulus Biofacies are strongly controlled by the dominant water masses within the Canada Basin: the Arctic Surface Water, Arctic Intermediate Water and Canada Basin Deep Water. The faunal distributions and their oceanographic associations in the Canada Basin are consistent with observations of benthic foraminifer distributions from other regions within the Arctic Ocean.

Clinical relevance of total HCV core antigen testing for hepatitis C monitoring and for predicting patients' response to therapy.

PubMed

Maynard, M; Pradat, P; Berthillon, P; Picchio, G; Voirin, N; Martinot, M; Marcellin, P; Trepo, C

2003-07-01

To study the correlation between total Hepatitis C virus (HCV) Core antigen (Ag) and HCV-RNA, and to assess the proficiency of HCV Core Ag testing in monitoring and predicting virologic response during and after pegylated interferon (PEG-IFN) and ribavirin combination therapy. A total of 307 samples from treated and untreated patients were used to assess the correlation between the total HCV Core Ag test and quantitative HCV-RNA assays (Superquant, and Quantiplex branched DNA 2.0 assay). Twenty-four patients received combination therapy for 48 weeks. Blood samples were collected at day 0, and week 2, 4, 12, 24, 48 and 72 for virologic evaluation. A linear relation exists between total HCV Core Ag and HCV-RNA levels. At 3 months the positive predictive value (PPV) of response to therapy was 100% with either HCV Core Ag or HCV-RNA. For HCV Core Ag the negative predictive value (NPV) was 100% whereas for HCV-RNA the NPV was 80% (P > 0.05). At month 1, the PPV was 95% and 100% when determined by HCV Core Ag and HCV-RNA, respectively. The NPV value was 100% for HCV Core Ag and 33% for HCV-RNA (P = 0.005). HCV Core Ag quantification could be useful in clinical practice to predict a sustained virological response early during therapy (4 weeks), reaching an optimal performance at month 3. The determination of total HCV Core Ag levels in serum, constitutes an accurate and reliable alternative to HCV-RNA for monitoring and predicting treatment outcome in patients receiving PEG-IFN/Ribavirin combination therapy.

From precipitation to ice cores: an isotopic comparison at Summit, Greenland

NASA Astrophysics Data System (ADS)

Kopec, B. G.; Feng, X.; Adolph, A. C.; Virginia, R. A.; Posmentier, E. S.

2015-12-01

The observed deuterium excess (d-excess) in ice cores from Summit, Greenland has high summer values and low winter values, which is opposite of the seasonal variations of most northern hemisphere locations. The interpretation of this d-excess seasonality in the context of moisture source changes is made more complicated by possible post-depositional modifications. We investigate potential post-depositional modifications within 3-4 years after precipitation events by collecting precipitation samples and comparing them with snow pit profiles at Summit. Precipitation was sampled on a storm-by-storm basis from July 2011 to September 2014. To assess the effect of wind blown snow on cross-storm contamination, we sampled at three heights (1, 2, and 4 m). Snow pits were sampled in the summers of 2013 and 2015 to span the entirety of our precipitation record. All samples were analyzed for δD and δ18O and d-excess was calculated. Mixing of snow between different storms was identified only for samples collected at the lowest height. We thus use the samples collected at the top height for interpretation. The annual cycle of precipitation isotopes follow the established seasonal relationship with the average summer enrichment of -217 and -29‰, and winter depletion of -317 and -40‰ for δD and δ18O, respectively. The d-excess shows an average summer maximum of 16‰ and winter minimum of 3‰. In the snow pit, the seasonal amplitude and phase of both oxygen and hydrogen isotopic ratios as well as the d-excess compare remarkably well with those of the precipitation. The profile appeared to be devoid of major post depositional effects except for a thin layer that changed during a melt event in 2012. However, this type of event is extremely rare at Summit, and should not significantly compromise the interpretation of precipitation isotopes in ice cores, except perhaps during climatic warm period summers. The precipitation d-excess seasonality is typically interpreted as resulting from changing moisture sources, but this does not explain the positive relationship between d-excess and d18O at Summit, Greenland. We propose that moisture sublimated from the snow surface, which typically has high d-excess values, may be an important moisture source captured in the isotope record.

CERC Field Research Facility Environmental Data Summary, 1977-79.

DTIC Science & Technology

1982-12-01

Motorola "Mini-Ranger," coupled to a Hewlett-Packard Mini-Computer and flatbed plotter. This positioning system was put together and operated by Prank... laminations within the core. While one diver collected the sample, the second diver recorded conditions on the bottom. This description included sediment

Design and characterization of a mapping device optimized to collect XRD patterns from highly inhomogeneous and low density powder samples

NASA Astrophysics Data System (ADS)

D'Elia, A.; Cibin, G.; Robbins, P. E.; Maggi, V.; Marcelli, A.

2017-11-01

We report on the development of a device designed to improve X-ray Powder Diffraction data acquisition through mapping coupled to a rotational motion of the sample. The device and procedures developed aim at overcoming the experimental issues that accompany the analysis of inhomogeneous samples, such as powders, dust or aerosols deposited on a flat substrate. Introducing the mapping of the substrate on which powders are deposited and at the same time the rotation, we may overcome drawbacks associated to inhomogeneous distributions such as ring-like patterns due to the coffee stain effect generated by the evaporation of a solution. Experimental data have been collected from powders of a NIST standard soil sample (11 μg) and from an airborne dust extracted from deep ice cores in Antarctica (9.6 μg). Both particulate samples have been deposited on polycarbonate membranes from ultra-dilute solutions. Data show that this approach makes possible to collect XRD patterns useful to identify mineral fractions present in these low density samples.

Geoscience Australia Publishes Sample Descriptions using W3C standards

NASA Astrophysics Data System (ADS)

Car, N. J.; Cox, S. J. D.; Bastrakova, I.; Wyborn, L. A.

2017-12-01

The recent revision of the W3C Semantic Sensor Network Ontology (SSN) has focused on three key concerns: Extending the scope of the ontology to include sampling and actuation as well as observation and sensing Modularizing the ontology into a simple core with few classes and properties and little formal axiomatization, supplemented by additional modules that formalize the semantics and extend the scope Alignments with several existing applications and upper ontologies These enhancements mean that SSN can now be used as the basis for publishing descriptions of geologic samples as Linked Data. Geoscience Australia maintains a database of about three million samples, collected over 50 years through projects from ocean core, terrestrial rock and hydrochemistry borehole projects, almost all of which are held in in the special-purpose GA samples repository. Access to descriptions of these samples as Linked Data has recently been enabled. The sample descriptions can be viewed in various machine-readable formalizations, including IGSN (XML & RDF), Dublin Core (XML & RDF) and SSN (RDF), as well as web landing-pages for people. Of particular importance is the support for encoding relationships between samples, and between samples and surveys, boreholes, and traverses which they are related to, as well as between samples processed for analytical purposes and their parents, siblings, and back to the original field samples. The SSN extension for Sample Relationships provides an extensible, semantically rich mechanism to capture any relationship necessary to explain the provenance of observation results obtained from samples. Sample citation is facilitated through the use of URI-based persistent identifiers which resolve to samples' landing pages. The sample system also allows PROV pingbacks to be received for samples when users of them record provenance for their actions.

Data on subsurface storage of liquid waste near Pensacola, Florida, 1963-1980

USGS Publications Warehouse

Hull, R.W.; Martin, J.B.

1982-01-01

Since 1963, when industrial waste was first injected into the subsurface in northwest Florida, considerable data have been collected relating to the geochemistry of subsurface waste storage. This report presents hydrogeologic data on two subsurface waste storage. This report presents hydrogeologic data on two subsurface storage systems near Pensacola, Fla., which inject liquid industrial waste through deep wells into a saline aquifer. Injection sites are described giving a history of well construction, injection, and testing; geologic data from cores and grab samples; hydrographs of injection rates, volume, pressure, and water levels; and chemical and physical data from water-quality samples collected from injection and monitor wells. (USGS)

Vertical distribution of trace-element concentrations and occurrence of metallurgical slag particles in accumulated bed sediments of Lake Roosevelt, Washington, September 2002

USGS Publications Warehouse

Cox, S.E.; Bell, P.R.; Lowther, J.S.; Van Metre, P.C.

2005-01-01

Sediment cores were collected from six locations in Lake Roosevelt to determine the vertical distributions of trace-element concentrations in the accumulated sediments of Lake Roosevelt. Elevated concentrations of arsenic, cadmium, copper, lead, mercury, and zinc occurred throughout much of the accumulated sediments. Concentrations varied greatly within the sediment core profiles, often covering a range of 5 to 10 fold. Trace-element concentrations typically were largest below the surficial sediments in the lower one-half of each profile, with generally decreasing concentrations from the 1964 horizon to the surface of the core. The trace-element profiles reflect changes in historical discharges of trace elements to the Columbia River by an upstream smelter. All samples analyzed exceeded clean-up guidelines adopted by the Confederated Tribes of the Colville Reservation for cadmium, lead, and zinc and more than 70 percent of the samples exceeded cleanup guidelines for mercury, arsenic, and copper. Although 100 percent of the samples exceeded sediment guidelines for cadmium, lead, and zinc, surficial concentrations of arsenic, copper, and mercury in some cores were less than the sediment-quality guidelines. With the exception of copper, the trace-element profiles of the five cores collected along the pre-reservoir Columbia River channel typically showed trends of decreasing concentrations in sediments deposited after the 1964 time horizon. The decreasing concentrations of trace elements in the upper half of cores from along the pre-reservoir Columbia River showed a pattern of decreasing concentrations similar to reductions in trace-element loading in liquid effluent from an upstream smelter. Except for arsenic, trace-element concentrations typically were smaller at downstream reservoir locations along the pre-reservoir Columbia River. Trace-element concentration in sediments from the Spokane Arm of the reservoir showed distinct differences compared to the similarities observed in cores from along the pre-reservoir Columbia River. Particles of slag, which have physical and chemical characteristics of slag discharged to the Columbia River by a lead-zinc smelter upstream of the reservoir at Trail, British Columbia, were found in sediments of Lake Roosevelt. Slag particles are more common in the upstream reaches of the reservoir. The chemical composition of the interior matrix of slag collected from Lake Roosevelt closely approximated the reported elemental concentrations of fresh smelter slag, although evidence of slag weathering was observed. Exfoliation flakes were observed on the surface of weathered slag particles isolated from the core sediments. The concentrations of zinc on the exposed surface of slag grains were smaller than concentrations on interior surfaces. Weathering rinds also were observed in the cross section of weathered slag grains, indicating that the glassy slag material was undergoing hydration and chemical weathering. Trace elements observed in accumulated sediments in the middle and lower reaches of the reservoir are more likely due to the input from liquid effluent discharges compared to slag discharges from the upstream smelter.

Shallow Water Habitat Mapping in Cape Cod National Seashore: A Post-Hurricane Sandy Study

NASA Astrophysics Data System (ADS)

Borrelli, M.; Smith, T.; Legare, B.; Mittermayr, A.

2017-12-01

Hurricane Sandy had a dramatic impact along coastal areas in proximity to landfall in late October 2012, and those impacts have been well-documented in terrestrial coastal settings. However, due to the lack of data on submerged marine habitats, similar subtidal impact studies have been limited. This study, one of four contemporaneous studies commissioned by the US National Park Service, developed maps of submerged shallow water marine habitats in and around Cape Cod National Seashore, Massachusetts. All four studies used similar methods of data collection, processing and analysis for the production of habitat maps. One of the motivations for the larger study conducted in the four coastal parks was to provide park managers with a baseline inventory of submerged marine habitats, against which to measure change after future storm events and other natural and anthropogenic phenomena. In this study data from a phase-measuring sidescan sonar, bottom grab samples, seismic reflection profiling, and sediment coring were all used to develop submerged marine habitat maps using the Coastal and Marine Ecological Classification Standard (CMECS). Vessel-based acoustic surveys (n = 76) were conducted in extreme shallow water across four embayments from 2014-2016. Sidescan sonar imagery covering 83.37 km2 was collected, and within that area, 49.53 km2 of co-located bathymetric data were collected with a mean depth of 4.00 m. Bottom grab samples (n = 476) to sample macroinvertebrates and sediments (along with other water column and habitat data) were collected, and these data were used along with the geophysical and coring data to develop final habitat maps using the CMECS framework.

Guidelines for collecting and processing samples of stream bed sediment for analysis of trace elements and organic contaminants for the National Water-Quality Assessment Program

USGS Publications Warehouse

Shelton, Larry R.; Capel, Paul D.

1994-01-01

A major component of the U.S. Geological Survey's National Water-Quality Assessment program is to assess the occurrence and distribution of trace elements and organic contaminants in streams. The first phase of the strategy for the assessment is to analyze samples of bed sediments from depositional zones. Fine-grained particles deposited in these zones are natural accumulators of trace elements and hydrophobic organic compounds. For the information to be comparable among studies in many different parts of the Nation, strategies for selecting stream sites and depositional zones are critical. Fine-grained surficial sediments are obtained from several depositional zones within a stream reach and composited to yield a sample representing average conditions. Sample collection and processing must be done consistently and by procedures specifically designed to separate the fine material into fractions that yield uncontaminated samples for trace-level analytes in the laboratory. Special coring samplers and other instruments made of Teflon are used for collection. Samples are processed through a 2.0-millimeter stainless-steel mesh sieve for organic contaminate analysis and a 63-micrometer nylon-cloth sieve for trace-element analysis. Quality assurance is maintained by strict collection and processing procedures, duplicate samplings, and a rigid cleaning procedure.

Geochemical data for mercury, methylmercury, and other constituents in sediments from Englebright Lake, California, 2002

USGS Publications Warehouse

Alpers, Charles N.; Hunerlach, Michael P.; Marvin-DePasquale, Mark C.; Antweiler, Ronald C.; Lasorsa, Brenda K.; De Wild, John F.; Snyder, Noah P.

2006-01-01

Deep coring penetrated the full thickness of material deposited after 1940 at six locations in the reservoir; the cores reached a maximum depth of 32.8 meters below the reservoir floor. At the three deep coring sites closest to Englebright Dam, concentrations of HgT (dry basis) were consistently in the range of 100 to 500 ng/g (nanogram per gram), in sediment dominantly of silt size (median grain size of 0.004 to 0.063 mm [millimeter]). At the deep coring sites located farther upstream, the upper parts of the profile had lower concentrations of HgT, generally ranging from 2 to 100 ng/g, in sediment dominantly of sand size (median grain size from 0.063 to 2 mm). The lower part of the vertical profiles at three upstream coring sites had higher concentrations of HgT than the upper and middle parts of these profiles, and had finer median grain size. The highest median concentration of MeHg (1.1 ng/g) was in the top 2 cm (centimeter) of the shallow box cores. This vertical interval also had the highest value of the ratio of MeHg to HgT, 0.41 percent. Median concentrations of MeHg and median values of MeHg/HgT decreased systematically with depth from 0-4 to 4-8 to 8-12 cm in the shallow cores. However, similar systematic decreases were not observed at the meter scale in the deep cores of the MEM (MEthylMercury) series. The overall median of the ratio MeHg/HgT in the deep cores was 0.25 percent, not much less than the overall median value for the shallow cores (0.33 percent). Mercury-203 radiotracer divalent inorganic mercury (203Hg(II)) was used to determine microbial mercury-methylation potential rates for 11 samples collected from three reservoir locations and various depths in the sediment profile. For the five shallow mercury-methylation subsamples, ancillary geochemical parameters were assayed, including microbial sulfate reduction rates, sulfur speciation (sediment acid volatile sulfide, total reduced sulfur, and pore-water sulfate), iron speciation (sediment acid extractable iron(II), amorphous iron(III), crystalline iron(III) and pore-water iron(II)), pore-water chloride and dissolved organic carbon, and pH, oxidation-reduction potential (Eh) and whole-sediment organic content. The highest potential rates of microbial mercury methylation were measured in shallow (0 to 8 cm depth) sediments (5 to 30 nanograms of mercury per gram dry sediment per day), whereas potential rates for subsamples collected from depths greater than 500 cm were consistently below the detection limit of the radiotracer method (< 0.02 nanogram of mercury per gram dry sediment per day). Chemical analyses of trace and major elements in bed sediment are presented for 202 samples from deep cores from five locations in Englebright Lake. The mean values and standard deviations for selected trace elements were as follows (in micrograms per gram): antimony, 2.4 ? 1.6; arsenic, 69 ? 48; chromium, 134 ? 23; lead, 33 ? 25; and nickel, 87 ? 24. Concentrated samples of heavy-mineral grains, prepared using nine large-volume composite samples from

Drilling on the Moon and Mars: Developing the Science Approach for Subsurface Exploration with Human Crews

NASA Technical Reports Server (NTRS)

Stoker, C. R.; Zavaleta, J.; Bell, M.; Direto, S.; Foing, B.; Blake, D.; Kim, S.

2010-01-01

DOMEX (Drilling on the Moon and Mars in Human Exploration) is using analog missions to develop the approach for using human crews to perform science activities on the Moon and Mars involving exploration and sampling of the subsurface. Subsurface science is an important activity that may be uniquely enabled by human crews. DOMEX provides an opportunity to plan and execute planetary mission science activities without the expense and overhead of a planetary mission. Objectives: The objective of this first in a series of DOMEX missions were to 1) explore the regional area to understand the geologic context and determine stratigraphy and geologic history of various geologic units in the area. 2) Explore for and characterize sites for deploying a deep (10 m depth) drilling system in a subsequent field season. 3) Perform GPR on candidate drill sites. 4) Select sites that represent different geological units deposited in different epochs and collect soil cores using sterile procedures for mineralogical, organic and biological analysis. 5) Operate the MUM in 3 different sites representing different geological units and soil characteristics. 6) Collect rock and soil samples of sites visited and analyze them at the habitat. Results: At mission start the crew performed a regional survey to identify major geologic units that were correlated to recognized stratigraphy and regional geologic maps. Several candidate drill sites were identified. During the rest of the mission, successful GPR surveys were conducted in four locations. Soil cores were collected in 5 locations representing soils from 4 different geologic units, to depths up to 1m. Soil cores from two locations were analyzed with PCR in the laboratory. The remainder were reserved for subsequent analysis. XRD analysis was performed in the habitat and in the field on 39 samples, to assist with sample characterization, conservation, and archiving. MUM was deployed at 3 field locations and 1 test location (outside the habitat) where it operated autonomously for 2-4 hours at each site. Depths achieved ranged from 15 to 70 cm depending on the soil compressive strength and the presence and depth of subsurface indurated layers. Subsurface samples weighing 0.5 to 1 g were collected at the deepest depth encountered at each of the sites using the MUM automated sample collection system, and subsequently analyzed with XRD. Downhole inspection of holes produced by MUM with the Raman spectrometer was acquired on two of the holes and spectral features associated with selenite were identified in specific soil layers. Previously unreported fossilized remains of vertebrate fauna from the Jurassic era were discovered during our mission. Analysis of mineral biomarkers associated with this discovery are underway.

Using ground and intact coal Samples to evaluate hydrocarbon fate during supercritical CO2 injection into coal beds: effects of particle size and coal moisture

USGS Publications Warehouse

Kolak, Jon; Hackley, Paul C.; Ruppert, Leslie F.; Warwick, Peter D.; Burruss, Robert

2015-01-01

To investigate the potential for mobilizing organic compounds from coal beds during geologic carbon dioxide (CO2) storage (sequestration), a series of solvent extractions using dichloromethane (DCM) and using supercritical CO2 (40 °C and 10 MPa) were conducted on a set of coal samples collected from Louisiana and Ohio. The coal samples studied range in rank from lignite A to high volatile A bituminous, and were characterized using proximate, ultimate, organic petrography, and sorption isotherm analyses. Sorption isotherm analyses of gaseous CO2 and methane show a general increase in gas storage capacity with coal rank, consistent with findings from previous studies. In the solvent extractions, both dry, ground coal samples and moist, intact core plug samples were used to evaluate effects of variations in particle size and moisture content. Samples were spiked with perdeuterated surrogate compounds prior to extraction, and extracts were analyzed via gas chromatography–mass spectrometry. The DCM extracts generally contained the highest concentrations of organic compounds, indicating the existence of additional hydrocarbons within the coal matrix that were not mobilized during supercritical CO2 extractions. Concentrations of aliphatic and aromatic compounds measured in supercritical CO2 extracts of core plug samples generally are lower than concentrations in corresponding extracts of dry, ground coal samples, due to differences in particle size and moisture content. Changes in the amount of extracted compounds and in surrogate recovery measured during consecutive supercritical CO2extractions of core plug samples appear to reflect the transition from a water-wet to a CO2-wet system. Changes in coal core plug mass during supercritical CO2 extraction range from 3.4% to 14%, indicating that a substantial portion of coal moisture is retained in the low-rank coal samples. Moisture retention within core plug samples, especially in low-rank coals, appears to inhibit accessibility of supercritical CO2 to coal matrix porosity, limiting the extent to which hydrocarbons are mobilized. Conversely, the enhanced recovery of some surrogates from core plugs relative to dry, ground coal samples might indicate that, once mobilized, supercritical CO2 is capable of transporting these constituents through coal beds. These results underscore the need for using intact coal samples, and for better characterization of forms of water in coal, to understand fate and transport of organic compounds during supercritical CO2 injection into coal beds.

Near-bottom pelagic bacteria at a deep-water sewage sludge disposal site.

PubMed

Takizawa, M; Straube, W L; Hill, R T; Colwell, R R

1993-10-01

The epibenthic bacterial community at deep-ocean sewage sludge disposal site DWD-106, located approximately 106 miles (ca. 196 km) off the coast of New Jersey, was assessed for changes associated with the introduction of large amounts of sewage sludge. Mixed cultures and bacterial isolates obtained from water overlying sediment core samples collected at the deep-water (2,500 m) municipal sewage disposal site were tested for the ability to grow under in situ conditions of temperature and pressure. The responses of cultures collected at a DWD-106 station heavily impacted by sewage sludge were compared with those of samples collected from a station at the same depth which was not contaminated by sewage sludge. Significant differences were observed in the ability of mixed bacterial cultures and isolates from the two sites to grow under deep-sea pressure and temperature conditions. The levels of sludge contamination were established by enumerating Clostridium perfringens, a sewage indicator bacterium, in sediment samples from the two sites. The results of hybridization experiments in which DNAs extracted directly from the water overlying sediment core samples were used indicate that the reference site epibenthic community, the disposal site epibenthic community, and the community in a surface sludge plume share many members. Decreased culturability of reference site mixed cultures in the presence of sewage sludge was observed. Thus, the culturable portions of both the autochthonous and allochthonous bacterial communities at the disposal site may be inhibited in situ, the former by sewage sludge and the latter by high pressure and low temperature.

Persistence and Bioavailability of DDT in a Coastal Salt Marsh

NASA Astrophysics Data System (ADS)

Rowlett, K.; Weathers, N.; Morrison, A.; White, H. K.

2016-02-01

DDT (dichlorodiphenyltrichloroethane) was a widely-used pesticide in the United States throughout the 1900s. In 1972, the EPA banned the use of DDT due to fears of severe bioaccumulation and toxicity in animals. However, the compound persists in measurable quantities in the environment, leading to questions surrounding its current bioavailability in key ecosystems such as coastal marshes. For this study a sediment core was collected in 2015 from a salt marsh in Dover, Delaware and the sediments and plant matter were analyzed for the presence of DDT and three of its main biological metabolites: DDD, DDE, and DDMU (collectively, DDX). Samples were extracted in toluene and analyzed for DDX via gas chromatography with mass spectrometry (GC/MS) operated in selected ion monitoring (SIM) mode. The initial down-core profile revealed that the maximum concentration of DDX in both plant matter (>1mm in size) and sediments (<250µm in size) was at 22-30cm below the marsh surface, corresponding to the time of DDT application, as determined by 210Pb-dating. After initial analysis of the concentration of DDX in the sediment core, a passive sampling method using low-density polyethylene (LDPE) was employed to measure the bioavailability of the DDX compounds in the collected sediments. Bioavailability experiments with LDPE are ongoing and results will be discussed. This study will contribute to our overall understanding of the persistence of DDT in the environment by further elucidating the association of DDX compounds with plants and sedimentary material as well as their bioavailability with respect to these associations.

Hollow Core Bragg Waveguide Design and Fabrication for Enhanced Raman Spectroscopy

NASA Astrophysics Data System (ADS)

Ramanan, Janahan

Raman spectroscopy is a widely used technique to unambiguously ascertain the chemical composition of a sample. The caveat with this technique is its extremely weak optical cross-section, making it difficult to measure Raman signal with standard optical setups. In this thesis, a novel hollow core Bragg Reflection Waveguide was designed to simultaneously increase the generation and collection of Raman scattered photons. A robust fabrication process of this waveguide was developed employing flip-chip bonding methods to securely seal the hollow core channel. The waveguide air-core propagation loss was experimentally measured to be 0.17 dB/cm, and the Raman sensitivity limit was measured to be 3 mmol/L for glycerol solution. The waveguide was also shown to enhance Raman modes of standard household aerosols that could not be seen with other devices.

Manoomin: place-based research with Native American students on wild rice lakes on the Fond du Lac Band of Lake Superior Chippewa Reservation, northern Minnesota

NASA Astrophysics Data System (ADS)

Ito, E.; Myrbo, A.; Dalbotten, D. M.; Pellerin, H.; Greensky, L.; Howes, T.; Wold, A.; McEathron, M. A.; Shanker, V.

2010-12-01

The manoomin project is a collaboration between Fond du Lac Tribal and Community College (Cloquet, MN), the Reservation’s Resource Management Division, and the University of Minnesota funded by the NSF GEO-OEDG Program. It builds on a successful seven-year history of collaboration between these parties, including regular science camps (gidaakiimanaanimigawig, Our Earth Lodge) for students of a wide range of ages. We are working as a team with Native students to study the history of wild rice (manoomin; Zizania palustris), a culturally important resource, growing on Reservation lakes. The joint project takes two main approaches: study of sediment core samples collected from Reservation lakes; and the collection of traditional knowledge about wild rice from the Elders. Science campers collect lake cores during winter with the assistance of the U of MN’s LacCore (National Lacustrine Core Facility) and Resource Management and visit LacCore to log, split and describe cores soon thereafter. Academic mentors with a range of specialties (phytoliths, pollen, plant macrofossils, sedimentology, geochemistry, magnetics) spend 1-2 weeks during the summer with small groups of college-age (>18, many nontraditional) student interns working on a particular paleoenvironmental proxy from the sediment cores. Younger students (middle and high school) also work in small teams in half day units with the same mentors. All campers become comfortable in an academic setting, gain experience working in research labs learning and practicing techniques, and jointly interpret collective results. The continuation of the project over five years (2009-2014) will allow these students to develop relationships with scientists and to receive mentoring beyond the laboratory as they make transitions into 2- and 4-year colleges and into graduate school. Their research provides historical and environmental information that is relevant to their own land that will be used by Resource Management which is charged to protect the wild rice and to improve its growth to better understand these ecosystems in the context of current global and local change. A substantial evaluation component charts progress and provides feedback to project participants and the larger community.

Soil Sampling Techniques For Alabama Grain Fields

NASA Technical Reports Server (NTRS)

Thompson, A. N.; Shaw, J. N.; Mask, P. L.; Touchton, J. T.; Rickman, D.

2003-01-01

Characterizing the spatial variability of nutrients facilitates precision soil sampling. Questions exist regarding the best technique for directed soil sampling based on a priori knowledge of soil and crop patterns. The objective of this study was to evaluate zone delineation techniques for Alabama grain fields to determine which method best minimized the soil test variability. Site one (25.8 ha) and site three (20.0 ha) were located in the Tennessee Valley region, and site two (24.2 ha) was located in the Coastal Plain region of Alabama. Tennessee Valley soils ranged from well drained Rhodic and Typic Paleudults to somewhat poorly drained Aquic Paleudults and Fluventic Dystrudepts. Coastal Plain s o i l s ranged from coarse-loamy Rhodic Kandiudults to loamy Arenic Kandiudults. Soils were sampled by grid soil sampling methods (grid sizes of 0.40 ha and 1 ha) consisting of: 1) twenty composited cores collected randomly throughout each grid (grid-cell sampling) and, 2) six composited cores collected randomly from a -3x3 m area at the center of each grid (grid-point sampling). Zones were established from 1) an Order 1 Soil Survey, 2) corn (Zea mays L.) yield maps, and 3) airborne remote sensing images. All soil properties were moderately to strongly spatially dependent as per semivariogram analyses. Differences in grid-point and grid-cell soil test values suggested grid-point sampling does not accurately represent grid values. Zones created by soil survey, yield data, and remote sensing images displayed lower coefficient of variations (8CV) for soil test values than overall field values, suggesting these techniques group soil test variability. However, few differences were observed between the three zone delineation techniques. Results suggest directed sampling using zone delineation techniques outlined in this paper would result in more efficient soil sampling for these Alabama grain fields.

Data Stewardship in the Ocean Sciences Needs to Include Physical Samples

NASA Astrophysics Data System (ADS)

Carter, M.; Lehnert, K.

2016-02-01

Across the Ocean Sciences, research involves the collection and study of samples collected above, at, and below the seafloor, including but not limited to rocks, sediments, fluids, gases, and living organisms. Many domains in the Earth Sciences have recently expressed the need for better discovery, access, and sharing of scientific samples and collections (EarthCube End-User Domain workshops, 2012 and 2013, http://earthcube.org/info/about/end-user-workshops), as has the US government (OSTP Memo, March 2014). iSamples (Internet of Samples in the Earth Sciences) is a Research Coordination Network within the EarthCube program that aims to advance the use of innovative cyberinfrastructure to support and advance the utility of physical samples and sample collections for science and ensure reproducibility of sample-based data and research results. iSamples strives to build, grow, and foster a new community of practice, in which domain scientists, curators of sample repositories and collections, computer and information scientists, software developers and technology innovators engage in and collaborate on defining, articulating, and addressing the needs and challenges of physical samples as a critical component of digital data infrastructure. A primary goal of iSamples is to deliver a community-endorsed set of best practices and standards for the registration, description, identification, and citation of physical specimens and define an actionable plan for implementation. iSamples conducted a broad community survey about sample sharing and has created 5 different working groups to address the different challenges of developing the internet of samples - from metadata schemas and unique identifiers to an architecture for a shared cyberinfrastructure to manage collections, to digitization of existing collections, to education, and ultimately to establishing the physical infrastructure that will ensure preservation and access of the physical samples. Repositories that curate marine sediment cores and dredge samples from the oceanic crust are participating in iSamples, but many other samples collected in the Ocean sciences are not yet represented. This presentation aims to engage a wider spectrum of Ocean scientists and sample curators in iSamples.

In-situ stress measurements using core-based methods in the vicinity of Nojima fault.

NASA Astrophysics Data System (ADS)

Yano, S.; Sugimoto, T.; Lin, W.; Lin, A.

2017-12-01

In the cycle of repeatable occurrence of earthquakes, stress accumulates at the source fault and its surroundings in an interseismic period until the next earthquake, and releases abruptly when the earthquake occurs. However, it is almost unknown that the quantitative relationship between stress change and earthquake occurrence. Hence, in order to improve our understanding on the mechanisms of the outbreak of earthquakes, it is important to grasp the stress states in the vicinity of the source fault and to evaluate its change over time. In this study, we carried out in-situ stress measurements by using core samples obtained from a scientific drilling penetrated through the Nojima fault which ruptured and caused the Hyogo-ken Nanbu earthquake, Japan in 1995. Our stress measurements were conducted from 2016 to 2017 when is 22 years after the earthquake. For this purpose, we applied the Anelastic Strain Recovery (ASR) method and Diametrical Core Deformation Analysis (DCDA). First, we measure the ASR change with time of the cores from stress releasing soon and calculate three-dimensional principal in-situ stress orientations and magnitudes from the ASR data. In this study, to ensure the enough amount of ASR, we conducted the measurements using the cores collected within a short time (e.g. 2.5 - 3.5 hours) after stress releasing by drilling at an on-site laboratory in the drilling site in Awaji island, Japan. The site locates at the south-west part of the Nojima fault. In DCDA, we measure the core diameters in all (360°) azimuths, and determine difference of the two horizontal principal stresses and their orientation by using the other cores as those used for ASR. DCDA experiments were conducted indoor and after a long time passed from core collecting. Lithology of all the core samples we used for ASR and DCDA are granite, and 19 and 7 cores were used for ASR and DCDA, respectively. As a result, it was found that the stress state in the depth range of 500 - 560 m and around 822 m were of normal faulting stress regime and that in 711 - 730 m was strike slip faulting type. As mentioned above, we have obtained a data set of the current state of stress around Nojima fault using the two core-based stress measurement methods. In future, we will determine the core orientations and restore the directions of the principal stress axes to the geologic coodinates.

Lunar regolith dynamics based on analysis of the cosmogenic radionuclides Na-22, Al-26, and Mn-53

NASA Technical Reports Server (NTRS)

Fruchter, J. S.; Rancitelli, L. A.; Laul, J. C.; Perkins, R. W.

1977-01-01

Depth profiles of Na-22 and Al-26 in the upper portions of five lunar cores are analyzed. From the analyses, it is concluded that the natural gardening processes on the lunar surface result in mixing of the regolith to a depth of 2-3 cm over a time period which is short compared with the half-life of Al-26 (0.73 m.y.). It is also concluded that the rotary drill processes which were used to obtain the deep drill samples generally resulted in loss and/or mixing of the upper portions of the cores. In contrast, the near-surface regions of the drive tube cores appear to have a well-preserved stratigraphy. Analysis of Mn-53 in samples of six lunar rocks helps substantiate the accuracy of age date estimates by other means, and provides definite information that the total lunar surface exposure of two of these rocks has occurred during a single surface event which continued to their collection.

Integration of the stratigraphic aspects of very large sea-floor databases using information processing

USGS Publications Warehouse

Jenkins, Clinton N.; Flocks, J.; Kulp, M.; ,

2006-01-01

Information-processing methods are described that integrate the stratigraphic aspects of large and diverse collections of sea-floor sample data. They efficiently convert common types of sea-floor data into database and GIS (geographical information system) tables, visual core logs, stratigraphic fence diagrams and sophisticated stratigraphic statistics. The input data are held in structured documents, essentially written core logs that are particularly efficient to create from raw input datasets. Techniques are described that permit efficient construction of regional databases consisting of hundreds of cores. The sedimentological observations in each core are located by their downhole depths (metres below sea floor - mbsf) and also by a verbal term that describes the sample 'situation' - a special fraction of the sediment or position in the core. The main processing creates a separate output event for each instance of top, bottom and situation, assigning top-base mbsf values from numeric or, where possible, from word-based relative locational information such as 'core catcher' in reference to sampler device, and recovery or penetration length. The processing outputs represent the sub-bottom as a sparse matrix of over 20 sediment properties of interest, such as grain size, porosity and colour. They can be plotted in a range of core-log programs including an in-built facility that better suits the requirements of sea-floor data. Finally, a suite of stratigraphic statistics are computed, including volumetric grades, overburdens, thicknesses and degrees of layering. ?? The Geological Society of London 2006.

Anomalously high arsenic concentration in a West Antarctic ice core and its relationship to copper mining in Chile

NASA Astrophysics Data System (ADS)

Schwanck, Franciele; Simões, Jefferson C.; Handley, Michael; Mayewski, Paul A.; Bernardo, Ronaldo T.; Aquino, Francisco E.

2016-01-01

Arsenic variability records are preserved in snow and ice cores and can be utilized to reconstruct air pollution history. The Mount Johns ice core (79°55‧S; 94°23‧W and 91.2 m depth) was collected from the West Antarctic Ice Sheet in the 2008/09 austral summer. Here, we report the As concentration variability as determined by 2137 samples from the upper 45 m of this core using ICP-SFMS (CCI, University of Maine, USA). The record covers approximately 125 years (1883-2008) showing a mean concentration of 4.32 pg g-1. The arsenic concentration in the core follows global copper mining evolution, particularly in Chile (the largest producer of Cu). From 1940 to 1990, copper-mining production increased along with arsenic concentrations in the MJ core, from 1.92 pg g-1 (before 1900) to 7.94 pg g-1 (1950). In the last two decades, environmental regulations for As emissions have been implemented, forcing smelters to treat their gases to conform to national and international environmental standards. In Chile, decontamination plants required by the government started operating from 1993 to 2000. Thereafter, Chilean copper production more than doubled while As emission levels declined, and the same reduction was observed in the Mount Johns ice core. After 1999, arsenic concentrations in our samples decreased to levels comparable to the period before 1900.

Hydrologic, lithologic, and chemical data for sediment in the shallow alluvial aquifer at two sites near Fallon, Churchill County, Nevada, 1984-85

USGS Publications Warehouse

Lico, M.S.; Welch, A.H.; Hughes, J.L.

1986-01-01

The U.S. Geological Survey collected an extensive amount of hydrogeologic data from the shallow alluvial aquifer at two study sites near Fallon, Nevada, from 1984 though 1985. These data were collected as part of a study to determine the geochemical controls on the mobility of arsenic and other trace elements in shallow groundwater systems. The main study area is approximately 7 miles south of Fallon. A subsidiary study area is about 8 miles east of Fallon. The data collected include lithologic logs and water level altitudes for the augered sampling wells and piezometers, and determinations of arsenic and selenium content, grain size, porosity, hydraulic conductivity, and mineralogy for sediment samples from cores. (USGS)

Siderophile Element Constraints on the Conditions of Core Formation in Mars

NASA Technical Reports Server (NTRS)

Righter, K.; Humayun, M.

2012-01-01

Siderophile element concentrations in planetary basalts and mantle samples have been used to estimate conditions of core formation for many years and have included applications to Earth, Moon, Mars and asteroid 4 Vesta [1]. For Earth, we have samples of mantle and a diverse collection of mantle melts which have provided a mature understanding of the how to reconstruct the concentration of siderophile elements in mantle materials, from only concentrations in surficial basalt (e.g., [2]). This approach has led to the consensus views that Earth underwent an early magma ocean stage to pressures of 40-50 GPa (e.g., [3,4]), Moon melted extensively and formed a small (approx. 2 mass %) metallic core [5], and 4 Vesta contains a metallic core that is approximately 18 mass % [6,7]. Based on new data from newly found meteorites, robotic spacecraft, and experimental partitioning studies, [8] showed that eight siderophile elements (Ni, Co, Mo, W, Ga, P, V and Cr) are consistent with equilibration of a 20 mass% S-rich metallic core with the mantle at pressures of 14 +/- 3 GPa. We aim to test this rather simple scenario with additional analyses of meteorites for a wide range of siderophile elements, and application of new experimental data for the volatile siderophile and highly siderophile elements.

Synthetic Musk Fragrances in Lake Erie and Lake Ontario Sediment Cores

PubMed Central

Peck, Aaron M.; Linebaugh, Emily K.; Hornbuckle, Keri C.

2009-01-01

Two sediment cores collected from Lake Ontario and Lake Erie were sectioned, dated, and analyzed for five polycyclic musk fragrances and two nitro musk fragrances. The polycyclic musk fragrances were HHCB (Galaxolide), AHTN (Tonalide), ATII (Traseolide), ADBI (Celestolide), and AHMI (Phantolide). The nitro musk fragrances were musk ketone and musk xylene. Chemical analysis was performed by gas chromatography/mass spectrometry (GC/MS) and results from Lake Erie were confirmed using gas chromatography/triple-quadrupole mass spectrometry (GC/MS/MS). The chemical signals observed at the two sampling locations were different from each other due primarily to large differences in the sedimentation rates at the two sampling locations. HHCB was detected in the Lake Erie core while six compounds were detected in the Lake Ontario core. Using measured fragrance and 210Pb activity, the burden of synthetic musk fragrances estimated from these sediment cores is 1900 kg in Lake Erie and 18000 kg in Lake Ontario. The input of these compounds to the lakes is increasing. The HHCB accumulation rates in Lake Erie for 1979-2003 and 1990-2003 correspond to doubling times of 16 ± 4 yr and 8 ± 2 yr, respectively. The results reflect current U.S. production trends for the sum of all fragrance compounds. PMID:17007119

Snow crystal imaging using scanning electron microscopy: III. Glacier ice, snow and biota

USGS Publications Warehouse

Rango, A.; Wergin, W.P.; Erbe, E.F.; Josberger, E.G.

2000-01-01

Low-temperature scanning electron microscopy (SEM) was used to observe metamorphosed snow, glacial firn, and glacial ice obtained from South Cascade Glacier in Washington State, USA. Biotic samples consisting of algae (Chlamydomonas nivalis) and ice worms (a species of oligochaetes) were also collected and imaged. In the field, the snow and biological samples were mounted on copper plates, cooled in liquid nitrogen, and stored in dry shipping containers which maintain a temperature of -196??C. The firn and glacier ice samples were obtained by extracting horizontal ice cores, 8 mm in diameter, at different levels from larger standard glaciological (vertical) ice cores 7.5 cm in diameter. These samples were cooled in liquid nitrogen and placed in cryotubes, were stored in the same dry shipping container, and sent to the SEM facility. In the laboratory, the samples were sputter coated with platinum and imaged by a low-temperature SEM. To image the firn and glacier ice samples, the cores were fractured in liquid nitrogen, attached to a specimen holder, and then imaged. While light microscope images of snow and ice are difficult to interpret because of internal reflection and refraction, the SEM images provide a clear and unique view of the surface of the samples because they are generated from electrons emitted or reflected only from the surface of the sample. In addition, the SEM has a great depth of field with a wide range of magnifying capabilities. The resulting images clearly show the individual grains of the seasonal snowpack and the bonding between the snow grains. Images of firn show individual ice crystals, the bonding between the crystals, and connected air spaces. Images of glacier ice show a crystal structure on a scale of 1-2 mm which is considerably smaller than the expected crystal size. Microscopic air bubbles, less than 15 ??m in diameter, clearly marked the boundaries between these crystal-like features. The life forms associated with the glacier were easily imaged and studied. The low-temperature SEM sample collecting and handling methods proved to be operable in the field; the SEM analysis is applicable to glaciological studies and reveals details unattainable by conventional light microscopic methods.Low temperature scanning electron microscopy (SEM) was used to observe metamorphosed snow, glacial firn, and glacial ice obtained from South Cascade Glacier in Washington State, USA. Biotic samples consisting of algae and ice worms were also collected and imaged. The SEM images provide a clear and unique view of the surface of the samples because they are generated from electrons emitted or reflected only from the surface of the sample. The SEM has a great depth of field with a wide range of magnifying capabilities.

Perceived Educational Values of Omani School Principals

ERIC Educational Resources Information Center

Al-Ani, Wajeha Thabit; Al-Harthi, Aisha Salim

2017-01-01

This qualitative study investigated the perceived educational values of Omani school principals. Data were collected using a semi-structured interview form which focused on the core values of school administration as perceived by a sample of 44 school principals; a focus group interview was also held. Data were analysed using Nvivo software. The…

Protocol to Reconstruct Historical Contaminant Loading to Large Lakes: The Lake Michigan Sediment Record of Mercury

EPA Science Inventory

Samples of opportunity from Pb-210 dated sediment cores collected from Lake Michigan between 1994 and 1996 were analyzed for mercury. The storage of both anthropogenic and total (post-1850) mercury in the lake was calculated to be 186 and 228 metric tons, respectively. By setti...

The Apollo Lunar Sample Image Collection: Digital Archiving and Online Access

NASA Technical Reports Server (NTRS)

Todd, Nancy S.; Lofgren, Gary E.; Stefanov, William L.; Garcia, Patricia A.

2014-01-01

The primary goal of the Apollo Program was to land human beings on the Moon and bring them safely back to Earth. This goal was achieved during six missions - Apollo 11, 12, 14, 15, 16, and 17 - that took place between 1969 and 1972. Among the many noteworthy engineering and scientific accomplishments of these missions, perhaps the most important in terms of scientific impact was the return of 382 kg (842 lb.) of lunar rocks, core samples, pebbles, sand, and dust from the lunar surface to Earth. Returned samples were curated at JSC (then known as the Manned Spacecraft Center) and, as part of the original processing, high-quality photographs were taken of each sample. The top, bottom, and sides of each rock sample were photographed, along with 16 stereo image pairs taken at 45-degree intervals. Photographs were also taken whenever a sample was subdivided and when thin sections were made. This collection of lunar sample images consists of roughly 36,000 photographs; all six Apollo missions are represented.

Test well DO-CE 88 at Cambridge, Dorchester County, Maryland

USGS Publications Warehouse

Trapp, Henry; Knobel, LeRoy L.; Meisler, Harold; Leahy, P. Patrick

1984-01-01

Test well DO-CE 88 at Cambridge, Maryland, penetrated 3,299 feet of unconsolidated Quaternary, Tertiary and Cretaceous sediments and bottomed in quartz-monzonite gneiss. The well was drilled to provide data for a study of the aquifer system of the northern Atlantic Coastal Plain. Twenty-one core samples were collected. Six sand zones were tested for aquifer properties and sampled for ground-water chemistry. Point-water heads were measured at seven depths. Environmental heads (which ranged from - 18.33 to + 44.16 feet relative to sea level)indicate an upward component of flow. A temperature log showed a maximum temperature of 41.9 degrees Celsius and a mean temperature gradient of 0.00838 degrees Celsius per foot. The water analyses delineated the freshwater-saltwater transition zone between 2,650 and 3,100 feet. The ground water changes progressively downward from a sodium bicarbonate to a sodium chloride character. Clays in the analyzed core samples belong to the montmorillonite and kaolinite groups, and mean cation exchange capacity ranged from 8.3 to 38.9 milliequivalents per 100 grams. Vertical and horizontal hydraulic conductivities measured in cores ranged from 1.5 x 10 6 to 1.3 feet per day and from 7.3 x 10 -6 to 1.3 feet per day, respectively, but the most permeable sands were not cored. Porosity was 1.5 percent in the quartz monzonite bedrock and ranged from 22.4 to 41 percent in the overlying sediments. Transmissivities from aquifer tests ranged from 25 to 850 feet squared per day; horizontal hydraulic conductivities ranged from.2.5 to 85 feet squared per day, and intrinsic permeabilities ranged from 0.8 to 23 micrometers squared. Fossils identified in core samples include palynomorphs, dinoflagellates, and foraminifers.

Reviving legacy clay mineralogy data and metadata through the IEDA-CCNY Data Internship Program

NASA Astrophysics Data System (ADS)

Palumbo, R. V.; Randel, C.; Ismail, A.; Block, K. A.; Cai, Y.; Carter, M.; Hemming, S. R.; Lehnert, K.

2016-12-01

Reconstruction of past climate and ocean circulation using ocean sediment cores relies on the use of multiple climate proxies measured on well-studied cores. Preserving all the information collected on a sediment core is crucial for the success of future studies using these unique and important samples. Clay mineralogy is a powerful tool to study weathering processes and sedimentary provenance. In his pioneering dissertation, Pierre Biscaye (1964, Yale University) established the X-Ray Diffraction (XRD) method for quantitative clay mineralogy analyses in ocean sediments and presented data for 500 core-top samples throughout the Atlantic Ocean and its neighboring seas. Unfortunately, the data only exists in analog format, which has discouraged scientists from reusing the data, apart from replication of the published maps. Archiving and preserving this dataset and making it publicly available in a digital format, linked with the metadata from the core repository will allow the scientific community to use these data to generate new findings. Under the supervision of Sidney Hemming and members of the Interdisciplinary Earth Data Alliance (IEDA) team, IEDA-CCNY interns digitized the data and metadata from Biscaye's dissertation and linked them with additional sample metadata using IGSN (International Geo-Sample Number). After compilation and proper documentation of the dataset, it was published in the EarthChem Library where the dataset will be openly accessible, and citable with a persistent DOI (Digital Object Identifier). During this internship, the students read peer-reviewed articles, interacted with active scientists in the field and acquired knowledge about XRD methods and the data generated, as well as its applications. They also learned about existing and emerging best practices in data publication and preservation. Data rescue projects are a fun and interactive way for students to become engaged in the field.

Description and Analysis of Core Samples: The Lunar Experience

NASA Technical Reports Server (NTRS)

McKay, David S.; Allton, Judith H.

1997-01-01

Although no samples yet have been returned from a comet, extensive experience from sampling another solar system body, the Moon, does exist. While, in overall structure, composition, and physical properties the Moon bears little resemblance to what is expected for a comet, sampling the Moon has provided some basic lessons in how to do things which may be equally applicable to cometary samples. In particular, an extensive series of core samples has been taken on the Moon, and coring is the best way to sample a comet in three dimensions. Data from cores taken at 24 Apollo collection stations and 3 Luna sites have been used to provide insight into the evolution of the lunar regolith. It is now well understood that this regolith is very complex and reflects gardening (stirring of grains by micrometeorites), erosion (from impacts and solar wind sputtering), maturation (exposure on the bare lunar surface to solar winds ions and micrometeorite impacts) and comminution of coarse grains into finer grains, blanket deposition of coarse-grained layers, and other processes. All of these processes have been documented in cores. While a cometary regolith should not be expected to parallel in detail the lunar regolith, it is possible that the upper part of a cometary regolith may include textural, mineralogical, and chemical features which reflect the original accretion of the comet, including a form of gardening. Differences in relative velocities and gravitational attraction no doubt made this accretionary gardening qualitatively much different than the lunar version. Furthermore, at least some comets, depending on their orbits, have been subjected to impacts of the uppermost surface by small projectiles at some time in their history. Consequently, a more recent post-accretional gardening may have occurred. Finally, for comets which approach the sun, large scale erosion may have occurred driven by gas loss. The uppermost material of these comets may reflect some of the features of this erosional process, such as crust formation, and variations with depth might be expected. Overall, the upper few meters of a comet may be as complex in their own way as the upper few meters of the lunar regolith have proven to be, and by analogy, detailed studies of core samples containing this depth information will be needed to understand these processes and the details of the accretional history and the subsequent alteration history of comets.

Early Archean spherule beds of possible impact origin from Barberton, South Africa: A detailed mineralogical and geochemical study

NASA Technical Reports Server (NTRS)

Koeberl, Christian; Reimold, Wolf Uwe; Boer, Rudolf H.

1992-01-01

The Barberton Greenstone belt is a 3.5- to 3.2-Ga-old formation situated in the Swaziland Supergroup near Barberton, northeast Transvaal, South Africa. The belt includes a lower, predominantly volcanic sequence, and an upper sedimentary sequence (e.g., the Fig Tree Group). Within this upper sedimentary sequence, Lowe and Byerly identified a series of different beds of spherules with diameters of around 0.5-2 mm. Lowe and Byerly and Lowe et al. have interpreted these spherules to be condensates of rock vapor produced by large meteorite impacts in the early Archean. We have collected a series of samples from drill cores from the Mt. Morgan and Princeton sections near Barberton, as well as samples taken from underground exposures in the Sheba and Agnes mines. These samples seem much better preserved than the surface samples described by Lowe and Byerly and Lowe et al. Over a scale of just under 30 cm, several well-defined spherule beds are visible, interspaced with shales and/or layers of banded iron formation. Some spherules have clearly been deposited on top of a sedimentary unit because the shale layer shows indentions from the overlying spherules. Although fresher than the surface samples (e.g., spherule bed S-2), there is abundant evidence for extensive alteration, presumably by hydrothermal processes. In some sections of the cores sulfide mineralization is common. For our mineralogical and petrographical studies we have prepared detailed thin sections of all core and underground samples (as well as some surface samples from the S-2 layer for comparison). For geochemical work, layers with thicknesses in the order of 1-5 mm were separated from selected core and underground samples. The chemical analyses are being performed using neutron activation analysis in order to obtain data for about 35 trace elements in each sample. Major elements are being determined by XRF and plasma spectrometry. To clarify the history of the sulfide mineralization, sulfur isotopic compositions are being determined.

Methane Hydrate Recovered From A Mud Volcano in Santa Monica Basin, Offshore Southern California

NASA Astrophysics Data System (ADS)

Normark, W. R.; Hein, J. R.; Powell, C. L.; Lorenson, T. D.; Lee, H. J.; Edwards, B. D.

2003-12-01

In July 2003, a short (2.1 m) piston core from the summit of a mud volcano recovered methane hydrate at a water depth of 813 m in Santa Monica Basin. The discovery core penetrated into in the hydrate as evidenced by chunks of ice and violent degassing of the core section between 162 and 212 cm depth. The core consists of shell hash and carbonate clasts (to 7-cm long) in silty mud. The methanogenic carbonates are of two types: massive, recrystallized nodular masses with an outer mm-thick sugary patina and a bivalve coquina with carbonate cement. Living clams including the genus Vesicomya, commonly found at cold-seep sites elsewhere, were recovered from the top of the core. Further sampling attempts using piston, gravity, and box corers, all of which were obtained within 15 m of the discovery core, recovered olive-brown silty mud with variable amounts of whole and fragmented bivalve shells and methanogenic carbonate fragments characteristic of cold-seep environments. Gases collected in cores adjacent to the discovery core contain elevated amounts of methane and trace amounts of heavier hydrocarbon gases, indicating some component from thermogenic sources. Hydrogen sulfide was also detected in these sediment samples. Vertical channels in one core may have served as fluid pathways. The existence of hydrate at such a shallow depth in the sediment was unexpected, however, the presence of Vesicomya and hydrogen sulfide indicate that the mud volcano is a site of active methane venting. The mud volcano, which is about 24 km west-southwest of Redondo Beach, is about 300 m in diameter at the base. No internal structure is resolved on either high resolution deep-tow boomer or single-channel air-gun profiles, most likely as a result of the gas content and sediment deformation. The diapiric structure has ascended through well-bedded sediment on the lower slope of the basin, producing as much as 30 m of bathymetric relief. It is located in an area where strike-slip motion along the San Pedro Basin fault zone to the south is replaced by convergent motion to the north. The source horizon for the gas in the hydrate is unknown but appears to be collecting in beds as shallow as 200 m below the regional seafloor based on the presence of a strong and irregular reflection interval.

Attached and Unattached Bacterial Communities in a 120-Meter Corehole in an Acidic, Crystalline Rock Aquifer

PubMed Central

Lehman, R. Michael; Roberto, Francisco F.; Earley, Drummond; Bruhn, Debby F.; Brink, Susan E.; O'Connell, Sean P.; Delwiche, Mark E.; Colwell, Frederick S.

2001-01-01

The bacteria colonizing geologic core sections (attached) were contrasted with those found suspended in the groundwater (unattached) by examining the microbiology of 16 depth-paired core and groundwater samples using a suite of culture-independent and culture-dependent analyses. One hundred twenty-two meters was continuously cored from a buried chalcopyrite ore hosted in a biotite-quartz-monzonite porphyry at the Mineral Park Mine near Kingman, Ariz. Every fourth 1.5-m core was acquired using microbiologically defensible methods, and these core sections were aseptically processed for characterization of the attached bacteria. Groundwater samples containing unattached bacteria were collected from the uncased corehole at depth intervals corresponding to the individual cores using an inflatable straddle packer sampler. The groundwater was acidic (pH 2.8 to 5.0), with low levels of dissolved oxygen and high concentrations of sulfate and metals, including ferrous iron. Total numbers of attached cells were less than 105 cells g of core material−1 while unattached cells numbered about 105 cells ml of groundwater−1. Attached and unattached acidophilic heterotrophs were observed throughout the depth profile. In contrast, acidophilic chemolithotrophs were not found attached to the rock but were commonly observed in the groundwater. Attached communities were composed of low numbers (<40 CFU g−1) of neutrophilic heterotrophs that exhibited a high degree of morphologic diversity, while unattached communities contained higher numbers (ca. 103 CFU ml−1) of neutrophilic heterotrophs of limited diversity. Sulfate-reducing bacteria were restricted to the deepest samples of both core and groundwater. 16S ribosomal DNA sequence analysis of attached, acidophilic isolates indicated that organisms closely related to heterotrophic, acidophilic mesophiles such as Acidiphilium organovorum and, surprisingly, to the moderately thermophilic Alicyclobacillus acidocaldarius were present. The results indicate that viable (but possibly inactive) microorganisms were present in the buried ore and that there was substantial distinction in biomass and physiological capabilities between attached and unattached populations. PMID:11319087

Archival policies and collections database for the Woods Hole Science Center's marine sediment samples

USGS Publications Warehouse

Buczkowski, Brian J.; Kelsey, Sarah A.

2007-01-01

The Woods Hole Science Center of the U.S. Geological Survey (USGS) has been an active member of the Woods Hole research community, Woods Hole, Massachusetts, for over 40 years. In that time there have been many projects that involved the collection of sediment samples conducted by USGS scientists and technicians for the research and study of seabed environments and processes. These samples were collected at sea or near shore and then brought back to the Woods Hole Science Center (WHSC) for analysis. While at the center, samples are stored in ambient temperature, refrigerated and freezing conditions ranging from +2º Celsius to -18º Celsius, depending on the best mode of preparation for the study being conducted or the duration of storage planned for the samples. Recently, storage methods and available storage space have become a major concern at the WHSC. The core and sediment archive program described herein has been initiated to set standards for the management, methods, and duration of sample storage. A need has arisen to maintain organizational consistency and define storage protocol. This handbook serves as a reference and guide to all parties interested in using and accessing the WHSC's sample archive and also defines all the steps necessary to construct and maintain an organized collection of geological samples. It answers many questions as to the way in which the archive functions.

When is success not satisfying? Integrating regulatory focus and approach/avoidance motivation theories to explain the relation between core self-evaluation and job satisfaction.

PubMed

Ferris, D Lance; Johnson, Russell E; Rosen, Christopher C; Djurdjevic, Emilija; Chang, Chu-Hsiang Daisy; Tan, James A

2013-03-01

Integrating implications from regulatory focus and approach/avoidance motivation theories, we present a framework wherein motivational orientations toward positive (approach motivation orientation) or negative (avoidance motivation orientation) stimuli interact with workplace success to mediate the relation of core self-evaluation (CSE) with job satisfaction. Using data collected from supervisor-subordinate dyads (Sample 1) and time-lagged data (Sample 2), we found that the results from two studies indicated that the interaction of workplace success and avoidance motivation orientation mediated relations of CSE with job satisfaction. Although approach motivation orientation did not interact with workplace success, it did mediate the CSE-job satisfaction relation on its own. Implications for the CSE and approach/avoidance literatures are discussed.

Biogeographic Comparison of Lophelia-Associated Bacterial Communities in the Western Atlantic Reveals Conserved Core Microbiome

PubMed Central

Kellogg, Christina A.; Goldsmith, Dawn B.; Gray, Michael A.

2017-01-01

Over the last decade, publications on deep-sea corals have tripled. Most attention has been paid to Lophelia pertusa, a globally distributed scleractinian coral that creates critical three-dimensional habitat in the deep ocean. The bacterial community associated with L. pertusa has been previously described by a number of studies at sites in the Mediterranean Sea, Norwegian fjords, off Great Britain, and in the Gulf of Mexico (GOM). However, use of different methodologies prevents direct comparisons in most cases. Our objectives were to address intra-regional variation and to identify any conserved bacterial core community. We collected samples from three distinct colonies of L. pertusa at each of four locations within the western Atlantic: three sites within the GOM and one off the east coast of the United States. Amplicon libraries of 16S rRNA genes were generated using primers targeting the V4–V5 hypervariable region and 454 pyrosequencing. The dominant phylum was Proteobacteria (75–96%). At the family level, 80–95% of each sample was comprised of five groups: Pirellulaceae, Pseudonocardiaceae, Rhodobacteraceae, Sphingomonadaceae, and unclassified Oceanospirillales. Principal coordinate analysis based on weighted UniFrac distances showed a clear distinction between the GOM and Atlantic samples. Interestingly, the replicate samples from each location did not always cluster together, indicating there is not a strong site-specific influence. The core bacterial community, conserved in 100% of the samples, was dominated by the operational taxonomic units of genera Novosphingobium and Pseudonocardia, both known degraders of aromatic hydrocarbons. The sequence of another core member, Propionibacterium, was also found in prior studies of L. pertusa from Norway and Great Britain, suggesting a role as a conserved symbiont. By examining more than 40,000 sequences per sample, we found that GOM samples were dominated by the identified conserved core sequences, whereas open Atlantic samples had a much higher proportion of locally consistent bacteria. Further, predictive functional profiling highlights the potential for the L. pertusa microbiome to contribute to chemoautotrophy, nutrient cycling, and antibiotic production. PMID:28522997

Biogeographic Comparison of Lophelia-Associated Bacterial Communities in the Western Atlantic Reveals Conserved Core Microbiome.

PubMed

Kellogg, Christina A; Goldsmith, Dawn B; Gray, Michael A

2017-01-01

Over the last decade, publications on deep-sea corals have tripled. Most attention has been paid to Lophelia pertusa , a globally distributed scleractinian coral that creates critical three-dimensional habitat in the deep ocean. The bacterial community associated with L. pertusa has been previously described by a number of studies at sites in the Mediterranean Sea, Norwegian fjords, off Great Britain, and in the Gulf of Mexico (GOM). However, use of different methodologies prevents direct comparisons in most cases. Our objectives were to address intra-regional variation and to identify any conserved bacterial core community. We collected samples from three distinct colonies of L. pertusa at each of four locations within the western Atlantic: three sites within the GOM and one off the east coast of the United States. Amplicon libraries of 16S rRNA genes were generated using primers targeting the V4-V5 hypervariable region and 454 pyrosequencing. The dominant phylum was Proteobacteria (75-96%). At the family level, 80-95% of each sample was comprised of five groups: Pirellulaceae, Pseudonocardiaceae, Rhodobacteraceae, Sphingomonadaceae, and unclassified Oceanospirillales. Principal coordinate analysis based on weighted UniFrac distances showed a clear distinction between the GOM and Atlantic samples. Interestingly, the replicate samples from each location did not always cluster together, indicating there is not a strong site-specific influence. The core bacterial community, conserved in 100% of the samples, was dominated by the operational taxonomic units of genera Novosphingobium and Pseudonocardia , both known degraders of aromatic hydrocarbons. The sequence of another core member, Propionibacterium , was also found in prior studies of L. pertusa from Norway and Great Britain, suggesting a role as a conserved symbiont. By examining more than 40,000 sequences per sample, we found that GOM samples were dominated by the identified conserved core sequences, whereas open Atlantic samples had a much higher proportion of locally consistent bacteria. Further, predictive functional profiling highlights the potential for the L. pertusa microbiome to contribute to chemoautotrophy, nutrient cycling, and antibiotic production.

Biogeographic comparison of Lophelia-associated bacterial communities in the Western Atlantic reveals conserved core microbiome

USGS Publications Warehouse

Kellogg, Christina A.; Goldsmith, Dawn; Gray, Michael A.

2017-01-01

Over the last decade, publications on deep-sea corals have tripled. Most attention has been paid to Lophelia pertusa, a globally distributed scleractinian coral that creates critical three-dimensional habitat in the deep ocean. The bacterial community associated with L. pertusa has been previously described by a number of studies at sites in the Mediterranean Sea, Norwegian fjords, off Great Britain, and in the Gulf of Mexico (GOM). However, use of different methodologies prevents direct comparisons in most cases. Our objectives were to address intra-regional variation and to identify any conserved bacterial core community. We collected samples from three distinct colonies of L. pertusa at each of four locations within the western Atlantic: three sites within the GOM and one off the east coast of the United States. Amplicon libraries of 16S rRNA genes were generated using primers targeting the V4–V5 hypervariable region and 454 pyrosequencing. The dominant phylum was Proteobacteria (75–96%). At the family level, 80–95% of each sample was comprised of five groups: Pirellulaceae, Pseudonocardiaceae, Rhodobacteraceae, Sphingomonadaceae, and unclassified Oceanospirillales. Principal coordinate analysis based on weighted UniFrac distances showed a clear distinction between the GOM and Atlantic samples. Interestingly, the replicate samples from each location did not always cluster together, indicating there is not a strong site-specific influence. The core bacterial community, conserved in 100% of the samples, was dominated by the operational taxonomic units of genera Novosphingobium and Pseudonocardia, both known degraders of aromatic hydrocarbons. The sequence of another core member, Propionibacterium, was also found in prior studies of L. pertusa from Norway and Great Britain, suggesting a role as a conserved symbiont. By examining more than 40,000 sequences per sample, we found that GOM samples were dominated by the identified conserved core sequences, whereas open Atlantic samples had a much higher proportion of locally consistent bacteria. Further, predictive functional profiling highlights the potential for the L. pertusa microbiome to contribute to chemoautotrophy, nutrient cycling, and antibiotic production.

Hydrogeologic applications for historical records and images from rock samples collected at the Nevada National Security Site and vicinity, Nye County, Nevada - A supplement to Data Series 297

USGS Publications Warehouse

Wood, David B.

2018-03-14

Rock samples have been collected, analyzed, and interpreted from drilling and mining operations at the Nevada National Security Site for over one-half of a century. Records containing geologic and hydrologic analyses and interpretations have been compiled into a series of databases. Rock samples have been photographed and thin sections scanned. Records and images are preserved and available for public viewing and downloading at the U.S. Geological Survey ScienceBase, Mercury Core Library and Data Center Web site at https://www.sciencebase.gov/mercury/ and documented in U.S. Geological Survey Data Series 297. Example applications of these data and images are provided in this report.

Grain engineering: How nanoscale inhomogeneities can control charge collection in solar cells

DOE Office of Scientific and Technical Information (OSTI.GOV)

West, Bradley M.; Stuckelberger, Michael; Guthrey, Harvey

Statistical and correlative analysis are increasingly important in the design and study of new materials, from semiconductors to metals. Non-destructive measurement techniques, with high spatial resolution, capable of correlating composition and/or structure with device properties, are few and far between. For the case of polycrystalline and inhomogeneous materials, the added challenge is that nanoscale resolution is in general not compatible with the large sampling areas necessary to have a statistical representation of the specimen under study. For the study of grain cores and grain boundaries in polycrystalline solar absorbers this is of particular importance since their dissimilar behavior and variabilitymore » throughout the samples makes it difficult to draw conclusions and ultimately optimize the material. In this study, we present a nanoscale in-operando approach based on the multimodal utilization of synchrotron nano x-ray fluorescence and x-ray beam induced current collected for grain core and grain boundary areas and correlated pixel-by-pixel in fully operational Cu(In(1-x)Gax)Se2Cu(In(1-x)Gax)Se2 solar cells. We observe that low gallium cells have grain boundaries that over perform compared to the grain cores and high gallium cells have boundaries that under perform. These results demonstrate how nanoscale correlative X-ray microscopy can guide research pathways towards grain engineering low cost, high efficiency solar cells.« less

Grain engineering: How nanoscale inhomogeneities can control charge collection in solar cells

DOE PAGES

West, Bradley M.; Stuckelberger, Michael; Guthrey, Harvey; ...

2016-12-16

We present that statistical and correlative analysis are increasingly important in the design and study of new materials, from semiconductors to metals. Non-destructive measurement techniques, with high spatial resolution, capable of correlating composition and/or structure with device properties, are few and far between. For the case of polycrystalline and inhomogeneous materials, the added challenge is that nanoscale resolution is in general not compatible with the large sampling areas necessary to have a statistical representation of the specimen under study. For the study of grain cores and grain boundaries in polycrystalline solar absorbers this is of particular importance since their dissimilarmore » behavior and variability throughout the samples makes it difficult to draw conclusions and ultimately optimize the material. In this study, we present a nanoscale in-operando approach based on the multimodal utilization of synchrotron nano x-ray fluorescence and x-ray beam induced current collected for grain core and grain boundary areas and correlated pixel-by-pixel in fully operational Cu(In (1-x)Ga x)Se 2 solar cells. We observe that low gallium cells have grain boundaries that over perform compared to the grain cores and high gallium cells have boundaries that under perform. In conclusion, these results demonstrate how nanoscale correlative X-ray microscopy can guide research pathways towards grain engineering low cost, high efficiency solar cells.« less

Pd-Ag chronometry of IVA iron meteorites and the crystallization and cooling of a protoplanetary core

DOE PAGES

Matthes, M.; Fischer-Godde, M.; Kruijer, T. S.; ...

2017-09-07

To constrain the timescales and processes involved in the crystallization and cooling of protoplanetary cores, we examined the Pd-Ag isotope systematics of the IVA iron meteorites Muonionalusta and Gibeon. A Pd-Ag isochron for Muonionalusta provides an initial 107Pd/ 108Pd = (2.57 ± 0.07) × 10 -5. The three metal samples analyzed from Gibeon plot below the Muonionalusta isochron, but these samples also show significant effects of cosmic ray-induced neutron capture reactions, as is evident from 196Pt excesses in the Gibeon samples. After correction for neutron capture effects on Ag isotopes, the Gibeon samples plot on the Muonionalusta isochron, indicating thatmore » these two IVA irons have indistinguishable initial 107Pd/ 108Pd. Collectively, the Pd-Ag data indicate cooling of the IVA core below Pd-Ag closure between 2.9 ± 0.4 Ma and 8.9 ± 0.6 Ma after CAI formation, where this age range reflects uncertainties in the initial 107Pd/ 108Pd ratios of the solar system, which in turn result from uncertainties in the Pb-Pb age of Muonionalusta. The Ag isotopic data indicate that the IVA core initially evolved with a modestly elevated Pd/Ag, but the low Ag concentrations measured for some metal samples indicate derivation from a source with much lower Ag contents and, hence, higher Pd/Ag. These contrasting observations can be reconciled if the IVA irons crystallized from an initially more Ag-rich core, followed by extraction of Fe-S melts during compaction of the nearly solidified core. Owing to its strong tendency to partition into Fe-S melts, Ag was removed from the IVA core during compaction, leading to the very low Ag concentration observed in metal samples of IVA irons. Alternatively, Ag was lost by evaporation from a still molten metallic body just prior to the onset of crystallization. The Pd-Ag isotopic data indicate that Muonionalusta cooled at >500 K/Ma through the Pd-Ag closure temperature of ~900 K, consistent with the rapid cooling inferred from metallographic cooling rates for IVA irons. Finally, combined, these observations are consistent with cooling of IVA irons in a metallic body with little or no silicate mantle.« less

Pd-Ag chronometry of IVA iron meteorites and the crystallization and cooling of a protoplanetary core

NASA Astrophysics Data System (ADS)

Matthes, M.; Fischer-Gödde, M.; Kruijer, T. S.; Kleine, T.

2018-01-01

To constrain the timescales and processes involved in the crystallization and cooling of protoplanetary cores, we examined the Pd-Ag isotope systematics of the IVA iron meteorites Muonionalusta and Gibeon. A Pd-Ag isochron for Muonionalusta provides an initial 107Pd/108Pd = (2.57 ± 0.07) × 10-5. The three metal samples analyzed from Gibeon plot below the Muonionalusta isochron, but these samples also show significant effects of cosmic ray-induced neutron capture reactions, as is evident from 196Pt excesses in the Gibeon samples. After correction for neutron capture effects on Ag isotopes, the Gibeon samples plot on the Muonionalusta isochron, indicating that these two IVA irons have indistinguishable initial 107Pd/108Pd. Collectively, the Pd-Ag data indicate cooling of the IVA core below Pd-Ag closure between 2.9 ± 0.4 Ma and 8.9 ± 0.6 Ma after CAI formation, where this age range reflects uncertainties in the initial 107Pd/108Pd ratios of the solar system, which in turn result from uncertainties in the Pb-Pb age of Muonionalusta. The Ag isotopic data indicate that the IVA core initially evolved with a modestly elevated Pd/Ag, but the low Ag concentrations measured for some metal samples indicate derivation from a source with much lower Ag contents and, hence, higher Pd/Ag. These contrasting observations can be reconciled if the IVA irons crystallized from an initially more Ag-rich core, followed by extraction of Fe-S melts during compaction of the nearly solidified core. Owing to its strong tendency to partition into Fe-S melts, Ag was removed from the IVA core during compaction, leading to the very low Ag concentration observed in metal samples of IVA irons. Alternatively, Ag was lost by evaporation from a still molten metallic body just prior to the onset of crystallization. The Pd-Ag isotopic data indicate that Muonionalusta cooled at >500 K/Ma through the Pd-Ag closure temperature of ∼900 K, consistent with the rapid cooling inferred from metallographic cooling rates for IVA irons. Combined, these observations are consistent with cooling of IVA irons in a metallic body with little or no silicate mantle.

Pd-Ag chronometry of IVA iron meteorites and the crystallization and cooling of a protoplanetary core

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matthes, M.; Fischer-Godde, M.; Kruijer, T. S.

To constrain the timescales and processes involved in the crystallization and cooling of protoplanetary cores, we examined the Pd-Ag isotope systematics of the IVA iron meteorites Muonionalusta and Gibeon. A Pd-Ag isochron for Muonionalusta provides an initial 107Pd/ 108Pd = (2.57 ± 0.07) × 10 -5. The three metal samples analyzed from Gibeon plot below the Muonionalusta isochron, but these samples also show significant effects of cosmic ray-induced neutron capture reactions, as is evident from 196Pt excesses in the Gibeon samples. After correction for neutron capture effects on Ag isotopes, the Gibeon samples plot on the Muonionalusta isochron, indicating thatmore » these two IVA irons have indistinguishable initial 107Pd/ 108Pd. Collectively, the Pd-Ag data indicate cooling of the IVA core below Pd-Ag closure between 2.9 ± 0.4 Ma and 8.9 ± 0.6 Ma after CAI formation, where this age range reflects uncertainties in the initial 107Pd/ 108Pd ratios of the solar system, which in turn result from uncertainties in the Pb-Pb age of Muonionalusta. The Ag isotopic data indicate that the IVA core initially evolved with a modestly elevated Pd/Ag, but the low Ag concentrations measured for some metal samples indicate derivation from a source with much lower Ag contents and, hence, higher Pd/Ag. These contrasting observations can be reconciled if the IVA irons crystallized from an initially more Ag-rich core, followed by extraction of Fe-S melts during compaction of the nearly solidified core. Owing to its strong tendency to partition into Fe-S melts, Ag was removed from the IVA core during compaction, leading to the very low Ag concentration observed in metal samples of IVA irons. Alternatively, Ag was lost by evaporation from a still molten metallic body just prior to the onset of crystallization. The Pd-Ag isotopic data indicate that Muonionalusta cooled at >500 K/Ma through the Pd-Ag closure temperature of ~900 K, consistent with the rapid cooling inferred from metallographic cooling rates for IVA irons. Finally, combined, these observations are consistent with cooling of IVA irons in a metallic body with little or no silicate mantle.« less

Characterization of the Fault Core and Damage Zone of the Borrego Fault, 2010 M7.2 Rupture

NASA Astrophysics Data System (ADS)

Dorsey, M. T.; Rockwell, T. K.; Girty, G.; Ostermeijer, G.; Mitchell, T. M.; Fletcher, J. M.

2017-12-01

We collected a continuous sample of the fault core and 23 samples of the damage zone out to 52 m across the rupture trace of the 2010 M7.2 El Mayor-Cucapa earthquake to characterize the physical damage and chemical transformations associated with this active seismic source. In addition to quantifying fracture intensity from macroscopic analysis, we cut a continuous thin section through the fault core and from various samples in the damage zone, and ran each sample for XRD analyses for clay mineralogy, XRF for bulk geochemical analyses, and bulk and grain density from which porosity and volumetric strain were derived. The parent rock is a hydrothermally-altered biotite tonalite, with biotite partially altered to chlorite. The presence of epidote with chlorite suggests that these rocks were subjected to relatively high temperatures of 300-400° C. Adjacent to the outermost damage zone is a chaotic breccia zone with distinct chemical and physical characteristics, indicating possible connection to an ancestral fault to the southwest. The damage zone consists of an outer zone of protocataclasite, which grades inward towards mesocataclasite with seams of ultracataclasite. The fault core is anomalous in that it is largely composed of a sliver of marble that has been translated along the fault, so direct comparison with the damage zone is impaired. From collected data, we observe that chloritization increases into the breccia and damage zones, as does the presence of illite. Porosity reaches maximum values in the damage zone adjacent to the core, and closely follows trends in fracture intensity. Statistically significant gains in Mg, Na, K, Mn, and total bulk mass occurred within the inner damage zone, with losses of Ca and P mass, which led to the formation of chlorite and albite. The outer damage zone displays gains in Mg and Na mass with losses in Ca and P mass. The breccia zone shows gains in mass of Mg and Mn and loss in total bulk mass. A gain in LOI in both the breccia and damage zones is attributed to formation of clay. Volumetric strain tracks porosity, as expected, and increases towards the core. Notably, damage appears to be superposed on chemical alterations, which supports the idea that much of the hydrothermal alteration occurred at depth followed by brecciation and cataclasis once the fault zone rocks were exhumed closer to the surface.

Completion summary for boreholes TAN-2271 and TAN‑2272 at Test Area North, Idaho National Laboratory, Idaho

USGS Publications Warehouse

Twining, Brian V.; Bartholomay, Roy C.; Hodges, Mary K.V.

2016-06-30

In 2015, the U.S. Geological Survey, in cooperation with the U.S. Department of Energy, drilled and constructed boreholes TAN-2271 and TAN-2272 for stratigraphic framework analyses and long-term groundwater monitoring of the eastern Snake River Plain aquifer at the Idaho National Laboratory in southeast Idaho. Borehole TAN-2271 initially was cored to collect continuous geologic data, and then re-drilled to complete construction as a monitor well. Borehole TAN-2272 was partially cored between 210 and 282 feet (ft) below land surface (BLS) then drilled and constructed as a monitor well. Boreholes TAN-2271 and TAN-2272 are separated by about 63 ft and have similar geologic layers and hydrologic characteristics based on geologic, geophysical, and aquifer test data collected. The final construction for boreholes TAN-2271 and TAN-2272 required 10-inch (in.) diameter carbon-steel well casing and 9.9-in. diameter open-hole completion below the casing to total depths of 282 and 287 ft BLS, respectively. Depth to water is measured near 228 ft BLS in both boreholes. Following construction and data collection, temporary submersible pumps and water-level access lines were placed to allow for aquifer testing, for collecting periodic water samples, and for measuring water levels.Borehole TAN-2271 was cored continuously, starting at the first basalt contact (about 33 ft BLS) to a depth of 284 ft BLS. Excluding surface sediment, recovery of basalt and sediment core at borehole TAN-2271 was better than 98 percent. Based on visual inspection of core and geophysical data, material examined from 33 to 211ft BLS primarily consists of two massive basalt flows that are about 78 and 50 ft in thickness and three sediment layers near 122, 197, and 201 ft BLS. Between 211 and 284 ft BLS, geophysical data and core material suggest a high occurrence of fractured and vesicular basalt. For the section of aquifer tested, there are two primary fractured aquifer intervals: the first between 235 and 255 ft BLS and the second between 272 and 282 ft BLS. Basalt texture for borehole TAN-2271 generally was described as aphanitic, phaneritic, and porphyritic. Sediment layers, starting near 122 ft BLS, generally were composed of fine-grained sand and silt with a lesser amount of clay. Basalt flows generally ranged in thickness from 2 to 78 ft and varied from highly fractured to dense with high to low vesiculation. Geophysical data and limited core material collected from TAN-2272 show similar lithologic sequences to those reported for TAN-2271.Geophysical and borehole video logs were collected during certain stages of the drilling and construction process at boreholes TAN-2271 and TAN-2272. Geophysical logs were examined synergistically with available core material to confirm geologic and hydrologic similarities and suggest possible fractured network interconnection between boreholes TAN-2271 and TAN-2272. Natural gamma log measurements were used to assess the completeness of the vapor port lines behind 10-in. diameter well casing. Electromagnetic flow meter results were used to identify downward flow conditions that exist for boreholes TAN-2271 and TAN-2272. Furthermore, gyroscopic deviation measurements were used to measure horizontal and vertical displacement at all depths in boreholes TAN-2271 and TAN-2272.After borehole construction was completed, single‑well aquifer tests were done within wells TAN-2271 and TAN‑2272 to provide estimates of transmissivity and hydraulic conductivity. The transmissivity and hydraulic conductivity were estimated for the pumping well and observation well during the aquifer tests conducted on August 25 and August 27, 2015. Estimates for transmissivity range from 4.1 . 103 feet squared per day (ft2/d) to 8.1 . 103 ft2/d; estimates for hydraulic conductivity range from 5.8 to 11.5 feet per day (ft/d). Both TAN-2271 and TAN‑2272 show sustained pumping rates of about 30 gallons per minute (gal/min) with measured drawdown in the pumping well of 1.96 ft and 1.14 ft, respectively. The transmissivity estimates for wells tested were within the range of values determined from previous aquifer tests in other wells near Test Area North.Groundwater samples were collected from both wells and were analyzed for cations, anions, metals, nutrients, volatile organic compounds, stable isotopes, and radionuclides. Groundwater samples for most of the inorganic constituents showed similar water chemistry in both wells. Groundwater samples for strontium-90, trichloroethene, and vinyl chloride exceeded maximum contaminant levels for public drinking water supplies in one or both wells.

Completion summary for boreholes USGS 140 and USGS 141 near the Advanced Test Reactor Complex, Idaho National Laboratory, Idaho

USGS Publications Warehouse

Twining, Brian V.; Bartholomay, Roy C.; Hodges, Mary K.V.

2014-01-01

In 2013, the U.S. Geological Survey, in cooperation with the U.S. Department of Energy, drilled and constructed boreholes USGS 140 and USGS 141 for stratigraphic framework analyses and long-term groundwater monitoring of the eastern Snake River Plain aquifer at the Idaho National Laboratory in southeast Idaho. Borehole USGS 140 initially was cored to collect continuous geologic data, and then re-drilled to complete construction as a monitor well. Borehole USGS 141 was drilled and constructed as a monitor well without coring. Boreholes USGS 140 and USGS 141 are separated by about 375 feet (ft) and have similar geologic layers and hydrologic characteristics based on geophysical and aquifer test data collected. The final construction for boreholes USGS 140 and USGS 141 required 6-inch (in.) diameter carbon-steel well casing and 5-in. diameter stainless-steel well screen; the screened monitoring interval was completed about 50 ft into the eastern Snake River Plain aquifer, between 496 and 546 ft below land surface (BLS) at both sites. Following construction and data collection, dedicated pumps and water-level access lines were placed to allow for aquifer testing, for collecting periodic water samples, and for measuring water levels. Borehole USGS 140 was cored continuously, starting from land surface to a depth of 543 ft BLS. Excluding surface sediment, recovery of basalt and sediment core at borehole USGS 140 was about 98 and 65 percent, respectively. Based on visual inspection of core and geophysical data, about 32 basalt flows and 4 sediment layers were collected from borehole USGS 140 between 34 and 543 ft BLS. Basalt texture for borehole USGS 140 generally was described as aphanitic, phaneritic, and porphyritic; rubble zones and flow mold structure also were described in recovered core material. Sediment layers, starting near 163 ft BLS, generally were composed of fine-grained sand and silt with a lesser amount of clay; however, between 223 and 228 ft BLS, silt with gravel was described. Basalt flows generally ranged in thickness from 3 to 76 ft (average of 14 ft) and varied from highly fractured to dense with high to low vesiculation. Geophysical and borehole video logs were collected during certain stages of the drilling and construction process at boreholes USGS 140 and USGS 141. Geophysical logs were examined synergistically with the core material for borehole USGS 140; additionally, geophysical data were examined to confirm geologic and hydrologic similarities between boreholes USGS 140 and USGS 141 because core was not collected for borehole USGS 141. Geophysical data suggest the occurrence of fractured and (or) vesiculated basalt, dense basalt, and sediment layering in both the saturated and unsaturated zones in borehole USGS 141. Omni-directional density measurements were used to assess the completeness of the grout annular seal behind 6-in. diameter well casing. Furthermore, gyroscopic deviation measurements were used to measure horizontal and vertical displacement at all depths in boreholes USGS 140 and USGS 141. Single-well aquifer tests were done following construction at wells USGS 140 and USGS 141 and data examined after the tests were used to provide estimates of specific-capacity, transmissivity, and hydraulic conductivity. The specific capacity, transmissivity, and hydraulic conductivity for well USGS 140 were estimated at 2,370 gallons per minute per foot [(gal/min)/ft)], 4.06 × 105 feet squared per day (ft2/d), and 740 feet per day (ft/d), respectively. The specific capacity, transmissivity, and hydraulic conductivity for well USGS 141 were estimated at 470 (gal/min)/ft, 5.95 × 104 ft2/d, and 110 ft/d, respectively. Measured flow rates remained relatively constant in well USGS 140 with averages of 23.9 and 23.7 gal/min during the first and second aquifer tests, respectively, and in well USGS 141 with an average of 23.4 gal/min. Water samples were analyzed for cations, anions, metals, nutrients, volatile organic compounds, stable isotopes, and radionuclides. Water samples from both wells indicated that concentrations of tritium, sulfate, and chromium were affected by wastewater disposal practices at the Advanced Test Reactor Complex. Most constituents in water from wells USGS 140 and USGS 141 had concentrations similar to concentrations in well USGS 136, which is upgradient from wells USGS 140 and USGS 141.

Site characterization design and techniques used at the Southern Shipbuilding Corporation site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mueller, J.P.; Geraghty, C.A.; Moore, G.W.

1995-12-31

The Southern Shipbuilding Corporation (SSC) site is an inactive barge/ship manufacturing and repair facility situated on approximately 54 acres in Slidell, St. Tammany Parish, Louisiana. Two unlined surface impoundments (North and South impoundments) are situated on the northwest portion of the site and are surrounded on three sides by Bayou Bonfouca. These impoundments are the sources of carcinogenic polynuclear aromatic hydrocarbon (CPAH) contamination at the site. Inadequate containment has resulted in the release of impoundment wastes into the bayou. To evaluate potential response alternatives for the site, an Engineering Evaluation/Cost Analysis (EE/CA) field investigation was conducted from July through Octobermore » 1994. A two phase sampling approach was used in combination with innovative and traditional sampling techniques, field screening technologies, and exploitation of the visual characteristics of the waste to determine the extent of waste migration with limited off-site laboratory confirmation. A skid-mounted mobile drilling unit, secured to a specialized sampling platform designed for multiple applications, was used for collection of sediment cores from the bayou as well as tarry sludge cores from the impoundments. Field screening of core samples was accomplished on site using an organic vapor analyzer and a total petroleum hydrocarbon (TPH) field analyzer. Pollutants of concern include metals, cyanide, dioxin, and organic compounds. This paper presents details on the sampling design and characterization techniques used to accomplish the EE/CA field investigation.« less

Changes in soil hydraulic properties caused by construction of a simulated waste trench at the Idaho National Engineering Laboratory, Idaho

USGS Publications Warehouse

Shakofsky, S.M.

1995-01-01

In order to assess the effect of filled waste disposal trenches on transport-governing soil properties, comparisons were made between profiles of undisturbed soil and disturbed soil in a simulated waste trench. The changes in soil properties induced by the construction of a simulated waste trench were measured near the Radioactive Waste Management Complex at the Idaho National Engineering Laboratory (INEL) in the semi-arid southeast region of Idaho. The soil samples were collected, using a hydraulically- driven sampler to minimize sample disruption, from both a simulated waste trench and an undisturbed area nearby. Results show that the undisturbed profile has distinct layers whose properties differ significantly, whereas the soil profile in the simulated waste trench is. by comparison, homogeneous. Porosity was increased in the disturbed cores, and, correspondingly, saturated hydraulic conductivities were on average three times higher. With higher soil-moisture contents (greater than 0.32), unsaturated hydraulic conductivities for the undisturbed cores were typically greater than those for the disturbed cores. With lower moisture contents, most of the disturbed cores had greater hydraulic conductivities. The observed differences in hydraulic conductivities are interpreted and discussed as changes in the soil pore geometry.

Rapid, dynamic segregation of core forming melts: Results from in-situ High Pressure- High Temperature X-ray Tomography

NASA Astrophysics Data System (ADS)

Watson, H. C.; Yu, T.; Wang, Y.

2011-12-01

The timing and mechanisms of core formation in the Earth, as well as in Earth-forming planetesimals is a problem of significant importance in our understanding of the early evolution of terrestrial planets . W-Hf isotopic signatures in meteorites indicate that core formation in small pre-differentiated planetesimals was relatively rapid, and occurred over the span of a few million years. This time scale is difficult to achieve by percolative flow of the metallic phase through a silicate matrix in textural equilibrium. It has been suggested that during this active time in the early solar system, dynamic processes such as impacts may have caused significant deformation in the differentiating planetesimals, which could lead to much higher permeability of the core forming melts. Here, we have measured the change in permeability of core forming melts in a silicate matrix due to deformation. Mixtures of San Carlos olivine and FeS close to the equilibrium percolation threshold (~5 vol%FeS) were pre-synthesized to achieve an equilibrium microstructure, and then loaded into the rotational Drickamer apparatus at GSE-CARS, sector 13-BMD, at the Advanced Photon Source (Argonne National Laboratory). The samples were subsequently pressed to ~2GPa, and heated to 1100°C. Alternating cycles of rotation to collect X-ray tomography images, and twisting to deform the sample were conducted until the sample had been twisted by 1080°. Qualitative and quantitative analyses were performed on the resulting 3-dimensional x-ray tomographic images to evaluate the effect of shear deformation on permeability and migration velocity. Lattice-Boltzmann simulations were conducted, and show a marked increase in the permeability with increasing deformation, which would allow for much more rapid core formation in planetesimals.

Characteristics of environmental correlations between iron (oxyhydr)oxide nanoparticles and microbial activity

NASA Astrophysics Data System (ADS)

Tamura, T.; Kyono, A.; Muratani, M.

2014-12-01

Nanoparticulate iron oxides and oxyhydroxides with large surface area and high chemical reactivity cause the immobilization of heavy metals and the provision of essential nutrients to organisms. Environmental correlations between microbial activity and nanomorphology of iron (oxyhydr)oxides are significantly important for earth surface processes. In this study, we characterize iron (oxyhydr)oxide nanoparticles and microorganisms in natural lake sediments and describe their association observed between particle nanostructures and microbial species. About 40 cm depth of boring core sample was collected from Lake Kasumigaura, Lake Ushiku, Kokai River and Lake Tega, Japan. To distinguish both iron nanoparticles and growing bacterial colonies with depths, boring core samples were divided into three to five pieces. Particle morphologies, size, aggregation states, mineral species, and microorganisms were observed by transmission electron microscopy (TEM), X-ray diffraction (XRD), and rRNA gene sequences. Redox potential and pH of the lake sediments were also measured. The core sample from top is mainly composed of quartz of coarse-grained materials, while that from bottom is of ferrihydrite of fine grained materials. The authors will show the results of experiments and discuss the interrelation between iron nanoparticles and microorganisms.

A chronicle of organochlorine contamination in Clear Creek, Galveston and Harris Counties, Texas, 1960-2002, as recorded in sediment cores

USGS Publications Warehouse

Mahler, Barbara J.; Van Metre, Peter

2003-01-01

Clear Creek flows through the Texas Coastal Plain from its headwaters southeast of Houston, Texas, to Clear Lake, which empties into Galveston Bay. Segments of Clear Creek were on the State of Texas 303(d) list for 1998, 1999, and 2000 as a result of a fish consumption advisory issued by the Texas Department of Health. One of the contaminants for which the fish consumption advisory was issued is the organochlorine pesticide chlordane. Chlordane is a hydrophobic (“waterfearing”) contaminant; that is, it adsorbs to sediment at concentrations much greater than those found in water. The study described here sought to answer three questions:Does chlordane occur in Clear Creek sediments at present?Is there current loading of chlordane to Clear Creek?How has occurrence of chlordane in Clear Creek changed over time?To answer these questions, the U.S. Geological Survey (USGS), in cooperation with the U.S. Environmental Protection Agency (USEPA), collected and analyzed sediment cores from Clear Creek (fig. 1). Sediment cores sometimes can be used to reconstruct historical trends in concentrations of hydrophobic contaminants (Eisenreich and others, 1989; Van Metre and others, 1997). Cores were collected from five ponds connected to Clear Creek but out of the main channel (fig. 1). Cesium-137 (137Cs) was analyzed in the cores to determine if the sediments in the cores were undisturbed and if the cores reached sediment predating 1964. The two cores that appeared most undisturbed on the basis of 137Cs profiles (see sidebar, p. 2) were further subsampled and additional samples analyzed for 137Cs, organic carbon, selected organochlorine pesticides (including chlordane), and total polychlorinated biphenyls (PCB).

Tank 241-AY-101 Privatization Push Mode Core Sampling and Analysis Plan

DOE Office of Scientific and Technical Information (OSTI.GOV)

TEMPLETON, A.M.

2000-05-19

This sampling and analysis plan (SAP) identifies characterization objectives pertaining to sample collection, laboratory analytical evaluation, and reporting requirements for samples obtained from tank 241-AY-101. The purpose of this sampling event is to obtain information about the characteristics of the contents of 241-AY-101 required to satisfy ''Data Quality Objectives For RPP Privatization Phase I: Confirm Tank T Is An Appropriate Feed Source For High-Level Waste Feed Batch X(HLW DQO)' (Nguyen 1999a), ''Data Quality Objectives For TWRS Privatization Phase I: Confirm Tank T Is An Appropriate Feed Source For Low-Activity Waste Feed Butch X (LAW DQO) (Nguyen 1999b)'', ''Low Activity Wastemore » and High-Level Waste Feed Data Quality Objectives (L&H DQO)'' (Patello et al. 1999), and ''Characterization Data Needs for Development, Design, and Operation of Retrieval Equipment Developed through the Data Quality Objective Process (Equipment DQO)'' (Bloom 1996). Special instructions regarding support to the LAW and HLW DQOs are provided by Baldwin (1999). Push mode core samples will be obtained from risers 15G and 150 to provide sufficient material for the chemical analyses and tests required to satisfy these data quality objectives. The 222-S Laboratory will extrude core samples; composite the liquids and solids; perform chemical analyses on composite and segment samples; archive half-segment samples; and provide sub-samples to the Process Chemistry Laboratory. The Process Chemistry Laboratory will prepare test plans and perform process tests to evaluate the behavior of the 241-AY-101 waste undergoing the retrieval and treatment scenarios defined in the applicable DQOs. Requirements for analyses of samples originating in the process tests will be documented in the corresponding test plans and are not within the scope of this SAP.« less

Comparative evaluation of the indigenous microbial diversity vs. drilling fluid contaminants in the NEEM Greenland ice core.

PubMed

Miteva, Vanya; Burlingame, Caroline; Sowers, Todd; Brenchley, Jean

2014-08-01

Demonstrating that the detected microbial diversity in nonaseptically drilled deep ice cores is truly indigenous is challenging because of potential contamination with exogenous microbial cells. The NEEM Greenland ice core project provided a first-time opportunity to determine the origin and extent of contamination throughout drilling. We performed multiple parallel cultivation and culture-independent analyses of five decontaminated ice core samples from different depths (100-2051 m), the drilling fluid and its components Estisol and Coasol, and the drilling chips collected during drilling. We created a collection of diverse bacterial and fungal isolates (84 from the drilling fluid and its components, 45 from decontaminated ice, and 66 from drilling chips). Their categorization as contaminants or intrinsic glacial ice microorganisms was based on several criteria, including phylogenetic analyses, genomic fingerprinting, phenotypic characteristics, and presence in drilling fluid, chips, and/or ice. Firmicutes and fungi comprised the dominant group of contaminants among isolates and cloned rRNA genes. Conversely, most Proteobacteria and Actinobacteria originating from the ice were identified as intrinsic. This study provides a database of potential contaminants useful for future studies of NEEM cores and can contribute toward developing standardized protocols for contamination detection and ensuring the authenticity of the microbial diversity in deep glacial ice. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Presence and distribution of wastewater-derived pharmaceuticals in soil irrigated with reclaimed water

USGS Publications Warehouse

Kinney, C.A.; Furlong, E.T.; Werner, S.L.; Cahill, J.D.

2006-01-01

Three sites in the Front Range of Colorado, USA, were monitored from May through September 2003 to assess the presence and distribution of pharmaceuticals in soil irrigated with reclaimed water derived from urban wastewater. Soil cores were collected monthly, and 19 pharmaceuticals, all of which were detected during the present study, were measured in 5-cm increments of the 30-cm cores. Samples of reclaimed water were analyzed three times during the study to assess the input of pharmaceuticals. Samples collected before the onset of irrigation in 2003 contained numerous pharmaceuticals, likely resulting from the previous year's irrigation. Several of the selected pharmaceuticals increased in total soil concentration at one or more of the sites. The four most commonly detected pharmaceuticals were erythromycin, carbamazepine, fluoxetine, and diphenhydramine. Typical concentrations of the individual pharmaceuticals observed were low (0.02-15 ??g/kg dry soil). The existence of subsurface maximum concentrations and detectable concentrations at the lowest sampled soil depth might indicate interactions of soil components with pharmaceuticals during leaching through the vadose zone. Nevertheless, the present study demonstrates that reclaimed-water irrigation results in soil pharmaceutical concentrations that vary through the irrigation season and that some compounds persist for months after irrigation. ?? 2006 SETAC.

Quantifying grain shape with MorpheoLV: A case study using Holocene glacial marine sediments

NASA Astrophysics Data System (ADS)

Charpentier, Isabelle; Staszyc, Alicia B.; Wellner, Julia S.; Alejandro, Vanessa

2017-06-01

As demonstrated in earlier works, quantitative grain shape analysis has revealed to be a strong proxy for determining sediment transport history and depositional environments. MorpheoLV, devoted to the calculation of roughness coefficients from pictures of unique clastic sediment grains using Fourier analysis, drives computations for a collection of samples of grain images. This process may be applied to sedimentary deposits assuming core/interval/image archives for the storage of samples collected along depth. This study uses a 25.8 m jumbo piston core, NBP1203 JPC36, taken from a 100 m thick sedimentary drift deposit from Perseverance Drift on the northern Antarctic Peninsula continental shelf. Changes in ocean and ice conditions throughout the Holocene recorded in this sedimentary archive can be assessed by studying grain shape, grain texture, and other proxies. Ninety six intervals were sampled and a total of 2319 individual particle images were used. Microtextures of individual grains observed by SEM show a very high abundance of authigenically precipitated silica that obscures the original grain shape. Grain roughness, computed along depth with MorpheoLV, only shows small variation confirming the qualitative observation deduced from the SEM. Despite this, trends can be seen confirming the reliability of MorpheoLV as a tool for quantitative grain shape analysis.

Stratigraphy and depositional history of the Apollo 17 drill core

NASA Technical Reports Server (NTRS)

Taylor, G. J.; Warner, R. D.; Keil, K.

1979-01-01

Lithologic abundances obtained from modal analyses of a continuous string of polished thin sections indicate that the Apollo 17 deep drill core can be divided into three main zones: An upper zone (0-19 cm depth) characterized by high abundances of agglutinates (30%) and a high ratio of mare to non-mare lithic fragments (less than 0.8); a coarse-grained layer (24-56 cm) rich in fragments of high-Ti mare basalts and mineral fragments derived from them, and poor in agglutinates (6%); and a lower zone (56-285 cm) characterized by variable but generally high agglutinate abundances (25%) and a low ratio of mare to nonmare lithic fragments (0.6). Using observations of the geology of the landing site, the principles of cratering dynamics, and the vast amount of data collected on the core, the following depositional history for the section of regolith sampled by the Apollo 17 drill core: was devised.

Sediment data collected in 2012 from the northern Chandeleur Islands, Louisiana

USGS Publications Warehouse

Bernier, Julie C.; Kelso, Kyle W.; Buster, Noreen A.; Flocks, James G.; Miselis, Jennifer L.; DeWitt, Nancy T.

2014-01-01

As part of the Barrier Island Evolution Research project, scientists from the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center collected sediment samples from the northern Chandeleur Islands in March and September 2012. The overall objective of this project, which integrates geophysical (bathymetric, seismic, and topographic) and sedimentologic data, is to better understand the depositional and erosional processes that drive the morphologic evolution of barrier islands over annual to interannual timescales (1 to 5 years). Between June 2010 and April 2011, in response to the Deepwater Horizon oil spill, the State of Louisiana constructed a sand berm extending more than 14 kilometers along the northern Chandeleur Islands platform. The construction of the berm provided a unique opportunity to investigate how this new sediment source will interact with and affect the morphologic evolution of the barrier-island system. Data collected from this study will be used to describe differences in the physical characteristics and spatial distribution of sediments both along the axis of the berm and also along transects across the berm and onto the adjacent barrier island. Comparison of these data with data from subsequent sampling efforts will provide information about sediment interactions and movement between the berm and the natural island platform, improving our understanding of short-term morphologic change and processes in this barrier-island system. This data series serves as an archive of sediment data collected in March and September 2012 from the Chandeleur Islands sand berm and adjacent barrier-island environments. Data products include descriptive core logs, core photographs and x-radiographs, results of sediment grain-size analyses, sample location maps, and Geographic Information System data files with accompanying formal Federal Geographic Data Committee metadata.

43 CFR 3593.1 - Core or test hole cores, samples, cuttings.

Code of Federal Regulations, 2014 CFR

2014-10-01

.... (d) When drilling on lands with potential for encountering high pressure oil, gas or geothermal... 43 Public Lands: Interior 2 2014-10-01 2014-10-01 false Core or test hole cores, samples, cuttings...) EXPLORATION AND MINING OPERATIONS Bore Holes and Samples § 3593.1 Core or test hole cores, samples, cuttings...

43 CFR 3593.1 - Core or test hole cores, samples, cuttings.

Code of Federal Regulations, 2012 CFR

2012-10-01

.... (d) When drilling on lands with potential for encountering high pressure oil, gas or geothermal... 43 Public Lands: Interior 2 2012-10-01 2012-10-01 false Core or test hole cores, samples, cuttings...) EXPLORATION AND MINING OPERATIONS Bore Holes and Samples § 3593.1 Core or test hole cores, samples, cuttings...

43 CFR 3593.1 - Core or test hole cores, samples, cuttings.

Code of Federal Regulations, 2013 CFR

2013-10-01

.... (d) When drilling on lands with potential for encountering high pressure oil, gas or geothermal... 43 Public Lands: Interior 2 2013-10-01 2013-10-01 false Core or test hole cores, samples, cuttings...) EXPLORATION AND MINING OPERATIONS Bore Holes and Samples § 3593.1 Core or test hole cores, samples, cuttings...

43 CFR 3593.1 - Core or test hole cores, samples, cuttings.

Code of Federal Regulations, 2011 CFR

2011-10-01

.... (d) When drilling on lands with potential for encountering high pressure oil, gas or geothermal... 43 Public Lands: Interior 2 2011-10-01 2011-10-01 false Core or test hole cores, samples, cuttings...) EXPLORATION AND MINING OPERATIONS Bore Holes and Samples § 3593.1 Core or test hole cores, samples, cuttings...

Discovering the desirable alleles contributing to the lignocellulosic biomass traits in saccharum germplasm collections for energy cane improvement

DOE Office of Scientific and Technical Information (OSTI.GOV)

Todd, James; Comstock, Jack C.

Phenotyping Methods: The accessions (which includes 21 taxa and 1,177 accessions) in the World Collection of Sugarcane and Related Grasses (WCSRG) was evaluated for the following traits: arenchyma, internode length and diameter, pubescence, pith, Brix, stalk number and fiber. A core of 300 accessions that included each species in the World Collection was selected by using the Maximization Strategy in MStrat software. Results: The core had a higher diversity rating than random selections of 300 accessions. The Shannon–Weaver Diversity Index scores of the core and whole collection were similar indicating that the majority of the diversity was captured by themore » core collection. The ranges and medians between the core and WCSRG were similar; only two of the trait medians were not significant at P = 0.05 using the non-parametric Wilcoxon method and the coincidence rate (CR % = 96.2) was high (>80) indicating that extreme values were retained. Thus, the phenotypic diversity of these traits in the WCSRG was well represented by the core collection. Associations Methods: Genotypic and phenotypic data were collected for 1002 accessions of the WCSRG including 209 SSR markers. Association analysis was performed using both General Linear (GLM) and Maximum Likelihood (MLM) models. Different core collections with 300 accessions each were selected based on genotypic, phenotypic and combined data based on the Maximization Strategy in MStrat software. Results: A major portion of the genotyping involving SNPs is being conducted by Dr. Jianping Wang of the University of Florida under the DOE award DE-FG 02-11ER 65214 and the genotypic and phenotypic associations will be reported separately next year. In the current, study forty one and seventeen markers were found to be associated with traits using the GLM and MLM methods respectively including associations with arenchyma, internode length and diameter, pubescence, pith, and Sugar Cane Yellow Leaf Virus. The data indicates that each of the cores and the World Collection are similar to each other genotypically and phenotypically, but the core that was selected using only genotypic data was significantly different phenotypically. This indicates that there is not enough association between the genotypic and phenotypic diversity as to select using only genotypic diversity and get the full phenotypic diversity. Core Collection: Creation and Phenotyping Methods: To evaluate this germplasm for breeding purposes, a representative diversity panel selected from the WCSRG of approximately 300 accessions was planted at Canal Point, FL in three replications. These accessions were measured for stalk height and stalk number multiple times throughout the growing season and Brix and fresh biomass during harvest in 2013 and, stalk height, stalk number, stalk diameter, internode length, Brix and fresh and dry biomass was determined in the ratoon crop harvest in 2014. Results: In correlations of multiple measurements, there were higher correlations for early measurements of stalk number and stalk height with harvest traits like Brix and fresh weight. Hybrids had higher fresh mass and Brix while Saccharum spontaneum had higher stalk number and dry mass. The heritability of hybrid mass traits was lower in the ratoon crop. According to the principal component analysis, the diversity panel was divided into two groups. One group had accessions with high stalk number and high dry biomass like S. spontaneum and the other groups contained accessions with higher Brix and fresh biomass like S. officinarum. Mass traits correlated with each other as expected but hybrids had lower correlations between fresh and dry mass. Stalk number and the mass traits correlated with each other except in S. spontaneum and hybrids in the first ratoon. There were 110 accessions not significantly different in Brix from the commercial sugarcane checks including 10 S. spontaneum accessions. There were 27 dry and 6 fresh mass accessions significantly higher than the commercial sugarcane checks. Core Collection: Fiber analysis Methods: A biomass sample was taken from each accession then shredded and dried. Fiber analysis was then performed on each sample. The acetyl groups, acid insoluble lignin, acid soluble lignin, arabinan, glucan, holocellulose, total lignin, structural ash, and xylan were quantified on a % fiber basis and nonstructural ash on a % total basis. Results: There were significant, but not large differences between species for holocellulose, lignin, acetyl, acid soluble lignin, nonstructural ash, and glucan. For each trait, S. spontaneum had significantly more holocellulose, glucan, lignin, and nonstructural ash and less acetyl and acid soluble lignin than the other species. In all populations, glucan and was positively correlated with holocellulose were positively correlated and glucan and and holocellulose were negatively correlated with lignin. In hybrids, internode length correlated positively with holocellulose and nonstructural ash and negatively with lignin. The heritability estimates for each of the fiber component traits is low indicating that environment is an important factor in fiber composition. Principal component analysis indicated that a large amount of diversity exists within each of the species.« less

Geometry of the Nojima fault at Nojima-Hirabayashi, Japan - II. Microstructures and their implications for permeability and strength

USGS Publications Warehouse

Moore, Diane E.; Lockner, D.A.; Ito, H.; Ikeda, R.; Tanaka, H.; Omura, K.

2009-01-01

Samples of damage-zone granodiorite and fault core from two drillholes into the active, strike-slip Nojima fault zone display microstructures and alteration features that explain their measured present-day strengths and permeabilities and provide insight on the evolution of these properties in the fault zone. The least deformed damage-zone rocks contain two sets of nearly perpendicular (60-90?? angles), roughly vertical fractures that are concentrated in quartz-rich areas, with one set typically dominating over the other. With increasing intensity of deformation, which corresponds generally to increasing proximity to the core, zones of heavily fragmented rock, termed microbreccia zones, develop between prominent fractures of both sets. Granodiorite adjoining intersecting microbreccia zones in the active fault strands has been repeatedly fractured and locally brecciated, accompanied by the generation of millimeter-scale voids that are partly filled with secondary minerals. Minor shear bands overprint some of the heavily deformed areas, and small-scale shear zones form from the pairing of closely spaced shear bands. Strength and permeability measurements were made on core collected from the fault within a year after a major (Kobe) earthquake. Measured strengths of the samples decrease regularly with increasing fracturing and fragmentation, such that the gouge of the fault core and completely brecciated samples from the damage zone are the weakest. Permeability increases with increasing disruption, generally reaching a peak in heavily fractured but still more or less cohesive rock at the scale of the laboratory samples. Complete loss of cohesion, as in the gouge or the interiors of large microbreccia zones, is accompanied by a reduction of permeability by 1-2 orders of magnitude below the peak values. The core samples show abundant evidence of hydrothermal alteration and mineral precipitation. Permeability is thus expected to decrease and strength to increase somewhat in active fault strands between earthquakes, as mineral deposits progressively seal fractures and fill pore spaces. ?? Birkh??user Verlag, Basel 2009.

Tank 241-AY-101 Privatization Push Mode Core Sampling and Analysis Plan

DOE Office of Scientific and Technical Information (OSTI.GOV)

TEMPLETON, A.M.

2000-01-12

This sampling and analysis plan (SAP) identifies characterization objectives pertaining to sample collection, laboratory analytical evaluation, and reporting requirements for samples obtained from tank 241-AY-101. The purpose of this sampling event is to obtain information about the characteristics of the contents of 241-AY-101 required to satisfy Data Quality Objectives For RPP Privatization Phase I: Confirm Tank T Is An Appropriate Feed Source For High-Level Waste Feed Batch X(HLW DQO) (Nguyen 1999a), Data Quality Objectives For TWRS Privatization Phase I : Confirm Tank T Is An Appropriate Feed Source For Low-Activity Waste Feed Batch X (LAW DQO) (Nguyen 1999b), Low Activitymore » Waste and High-Level Waste Feed Data Quality Objectives (L and H DQO) (Patello et al. 1999), and Characterization Data Needs for Development, Design, and Operation of Retrieval Equipment Developed through the Data Quality Objective Process (Equipment DQO) (Bloom 1996). Special instructions regarding support to the LAW and HLW DQOs are provided by Baldwin (1999). Push mode core samples will be obtained from risers 15G and 150 to provide sufficient material for the chemical analyses and tests required to satisfy these data quality objectives. The 222-S Laboratory will extrude core samples; composite the liquids and solids; perform chemical analyses on composite and segment samples; archive half-segment samples; and provide subsamples to the Process Chemistry Laboratory. The Process Chemistry Laboratory will prepare test plans and perform process tests to evaluate the behavior of the 241-AY-101 waste undergoing the retrieval and treatment scenarios defined in the applicable DQOs. Requirements for analyses of samples originating in the process tests will be documented in the corresponding test plans and are not within the scope of this SAP.« less

77 FR 47069 - Proposed Collection; Comment Request

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-07

... currently approved information collection known as ``Federal Home Loan Bank Acquired Member Assets, Core...; Comment Request: Federal Home Loan Bank Acquired Member Assets, Core Mission Activities, Investments and... Collection; Comment Request: Federal Home Loan Bank Acquired Member Assets, Core Mission Activities...

Rescuing Paleomagnetic Data from Deep-Sea Cores Through the IEDA-CCNY Data Internship Program

NASA Astrophysics Data System (ADS)

Ismail, A.; Randel, C.; Palumbo, R. V.; Carter, M.; Cai, Y.; Kent, D. V.; Lehnert, K.; Block, K. A.

2016-12-01

Paleomagnetic data provides essential information for evaluating the chronostratigraphy of sedimentary cores. Lamont research vessels Vema and Robert Conrad collected over 10,000 deep-sea sediment cores around the world from 1953 to 1989. 10% of these cores have been sampled for paleomagnetic analyses at Lamont. Over the years, only 10% of these paleomagnetic records have been published. Moreover, data listings were only rarely made available in older publications because electronic appendices were not available and cyberinfrastructure was not in place for publishing and preserving these data. As a result, the majority of these datasets exist only as fading computer printouts in binders on the investigator's bookshelf. This summer, undergraduate students from the NSF-funded IEDA-CCNY Data Internship Program started digitizing this enormous dataset under the supervision of Dennis Kent, the current custodian of the data and one of the investigators who oversaw some of the data collection process, and an active leader in the field. Undergraduate students worked on digitizing paper records, proof-reading and organizing the data sheets for future integration into an appropriate repository. Through observing and plotting the data, the students learned about how sediment cores and paleomagnetic data are collected and used in research, and the best practices in data publishing and preservation from IEDA (Interdisciplinary Earth Data Alliance) team members. The students also compared different optical character recognition (OCR) softwares and established an efficient workflow to digitize these datasets. These datasets will eventually be incorporated in the Magnetics Information Consortium (MagIC), so that they can be easily compared with similar datasets and have the potential to generate new findings. Through this data rescue project, the students had the opportunity to learn about an important field of scientific research and interact with world-class scientists.

Socio-Emotional Effects of the Transition from Sight to Blindness

ERIC Educational Resources Information Center

Thurston, Mhairi; Thurston, Allen; McLeod, John

2010-01-01

The research examined the socio-emotional impact of sight loss on a sample of 18 blind and partially sighted adults from the east coast of Scotland (average age 64). The impact of sight loss in four core areas (mood, self-concept, social connectedness and loss) was explored. Data were collected using the mental health and social functioning…

Tree Sampling as a Method to Assess Vapor Intrusion Potential at a Site Characterized by VOC-Contaminated Groundwater and Soil.

PubMed

Wilson, Jordan L; Limmer, Matthew A; Samaranayake, V A; Schumacher, John G; Burken, Joel G

2017-09-19

Vapor intrusion (VI) by volatile organic compounds (VOCs) in the built environment presents a threat to human health. Traditional VI assessments are often time-, cost-, and labor-intensive; whereas traditional subsurface methods sample a relatively small volume in the subsurface and are difficult to collect within and near structures. Trees could provide a similar subsurface sample where roots act as the "sampler' and are already onsite. Regression models were developed to assess the relation between PCE concentrations in over 500 tree-core samples with PCE concentrations in over 50 groundwater and 1000 soil samples collected from a tetrachloroethylene- (PCE-) contaminated Superfund site and analyzed using gas chromatography. Results indicate that in planta concentrations are significantly and positively related to PCE concentrations in groundwater samples collected at depths less than 20 m (adjusted R 2 values greater than 0.80) and in soil samples (adjusted R 2 values greater than 0.90). Results indicate that a 30 cm diameter tree characterizes soil concentrations at depths less than 6 m over an area of 700-1600 m 2 , the volume of a typical basement. These findings indicate that tree sampling may be an appropriate method to detect contamination at shallow depths at sites with VI.

Tree sampling as a method to assess vapor intrusion potential at a site characterized by VOC-contaminated groundwater and soil

USGS Publications Warehouse

Wilson, Jordan L.; Limmer, Matthew A.; Samaranayake, V. A.; Schumacher, John G.; Burken, Joel G.

2017-01-01

Vapor intrusion (VI) by volatile organic compounds (VOCs) in the built environment presents a threat to human health. Traditional VI assessments are often time-, cost-, and labor-intensive; whereas traditional subsurface methods sample a relatively small volume in the subsurface and are difficult to collect within and near structures. Trees could provide a similar subsurface sample where roots act as the “sampler’ and are already onsite. Regression models were developed to assess the relation between PCE concentrations in over 500 tree-core samples with PCE concentrations in over 50 groundwater and 1000 soil samples collected from a tetrachloroethylene- (PCE-) contaminated Superfund site and analyzed using gas chromatography. Results indicate that in planta concentrations are significantly and positively related to PCE concentrations in groundwater samples collected at depths less than 20 m (adjusted R2 values greater than 0.80) and in soil samples (adjusted R2 values greater than 0.90). Results indicate that a 30 cm diameter tree characterizes soil concentrations at depths less than 6 m over an area of 700–1600 m2, the volume of a typical basement. These findings indicate that tree sampling may be an appropriate method to detect contamination at shallow depths at sites with VI.

Understanding shallow gas occurrences in the Gulf of Lions

USGS Publications Warehouse

Garcia-Garcia, Ana; Tesi, Tommaso; Orange, Daniel L.; Lorenson, T.; Miserocchi, Stefano; Langone, L.; Herbert, I.; Dougherty, J.

2007-01-01

New coring data have been acquired along the western Gulf of Lions showing anomalous concentrations of methane (up to 95,700 ppm) off the Rho??ne prodelta and the head of the southern canyons Lacaze-Duthiers and Cap de Creus. Sediment cores were acquired with box and kasten cores during 2004-2005 on several EuroSTRATAFORM cruises. Anomalous methane concentrations are discussed and integrated with organic carbon data. Sampled sites include locations where previous surveys identified acoustic anomalies in high-resolution seismic profiles, which may be related to the presence of gas. Interpretation of the collected data has enabled us to discuss the nature of shallow gas along the Gulf of Lions, and its association with recent sedimentary dynamics. The Rho??ne prodelta flood deposits deliver significant amounts of terrigenous organic matter that can be rapidly buried, effectively removing this organic matter from aerobic oxidation and biological uptake, and leading to the potential for methanogenesis with burial. Away from the flood-related sediments off the Rho??ne delta, the organic matter is being reworked and remineralized on its way along the western coast of the Gulf of Lions, with the result that the recent deposits in the canyon contain little reactive carbon. In the southernmost canyons, Lacaze-Duthiers and Cap de Creus, the gas analyses show relatively little shallow gas in the core samples. Samples with anomalous gas (up to 5,000 ppm methane) are limited to local areas where the samples also show higher amounts of organic matter. The anomalous samples at the head of the southern canyons may be related to methanogenesis of recent drape or of older sidewall canyon infills. ?? Springer-Verlag 2007.

Coring Sample Acquisition Tool

NASA Technical Reports Server (NTRS)

Haddad, Nicolas E.; Murray, Saben D.; Walkemeyer, Phillip E.; Badescu, Mircea; Sherrit, Stewart; Bao, Xiaoqi; Kriechbaum, Kristopher L.; Richardson, Megan; Klein, Kerry J.

2012-01-01

A sample acquisition tool (SAT) has been developed that can be used autonomously to sample drill and capture rock cores. The tool is designed to accommodate core transfer using a sample tube to the IMSAH (integrated Mars sample acquisition and handling) SHEC (sample handling, encapsulation, and containerization) without ever touching the pristine core sample in the transfer process.

Establishing a Reliable Depth-Age Relationship for the Denali Ice Core

NASA Astrophysics Data System (ADS)

Wake, C. P.; Osterberg, E. C.; Winski, D.; Ferris, D.; Kreutz, K. J.; Introne, D.; Dalton, M.

2015-12-01

Reliable climate reconstruction from ice core records requires the development of a reliable depth-age relationship. We have established a sub-annual resolution depth-age relationship for the upper 198 meters of a 208 m ice core recovered in 2013 from Mt. Hunter (3,900 m asl), Denali National Park, central Alaska. The dating of the ice core was accomplished via annual layer counting of glaciochemical time-series combined with identification of reference horizons from volcanic eruptions and atmospheric nuclear weapons testing. Using the continuous ice core melter system at Dartmouth College, sub-seasonal samples have been collected and analyzed for major ions, liquid conductivity, particle size and concentration, and stable isotope ratios. Annual signals are apparent in several of the chemical species measured in the ice core samples. Calcium and magnesium peak in the spring, ammonium peaks in the summer, methanesulfonic acid (MSA) peaks in the autumn, and stable isotopes display a strong seasonal cycle with the most depleted values occurring during the winter. Thin ice layers representing infrequent summertime melt were also used to identify summer layers in the core. Analysis of approximately one meter sections of the core via nondestructive gamma spectrometry over depths from 84 to 124 m identified a strong radioactive cesium-137 peak at 89 m which corresponds to the 1963 layer deposited during extensive atmospheric nuclear weapons testing. Peaks in the sulfate and chloride record have been used for the preliminary identification of volcanic signals preserved in the ice core, including ten events since 1883. We are confident that the combination of robust annual layers combined with reference horizons provides a timescale for the 20th century that has an error of less than 0.5 years, making calibrations between ice core records and the instrumental climate data particularly robust. Initial annual layer counting through the entire 198 m suggests the Denali Ice Core record will span the past 1000 years.

Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring

PubMed Central

Miller, Carolyn A.; Moore, Michael J.; Durban, John W.; Fearnbach, Holly; Barrett-Lennard, Lance G.

2017-01-01

ABSTRACT The pulmonary system is a common site for bacterial infections in cetaceans, but very little is known about their respiratory microbiome. We used a small, unmanned hexacopter to collect exhaled breath condensate (blow) from two geographically distinct populations of apparently healthy humpback whales (Megaptera novaeangliae), sampled in the Massachusetts coastal waters off Cape Cod (n = 17) and coastal waters around Vancouver Island (n = 9). Bacterial and archaeal small-subunit rRNA genes were amplified and sequenced from blow samples, including many of sparse volume, as well as seawater and other controls, to characterize the associated microbial community. The blow microbiomes were distinct from the seawater microbiomes and included 25 phylogenetically diverse bacteria common to all sampled whales. This core assemblage comprised on average 36% of the microbiome, making it one of the more consistent animal microbiomes studied to date. The closest phylogenetic relatives of 20 of these core microbes were previously detected in marine mammals, suggesting that this core microbiome assemblage is specialized for marine mammals and may indicate a healthy, noninfected pulmonary system. Pathogen screening was conducted on the microbiomes at the genus level, which showed that all blow and few seawater microbiomes contained relatives of bacterial pathogens; no known cetacean respiratory pathogens were detected in the blow. Overall, the discovery of a shared large core microbiome in humpback whales is an important advancement for health and disease monitoring of this species and of other large whales. IMPORTANCE The conservation and management of large whales rely in part upon health monitoring of individuals and populations, and methods generally necessitate invasive sampling. Here, we used a small, unmanned hexacopter drone to noninvasively fly above humpback whales from two populations, capture their exhaled breath (blow), and examine the associated microbiome. In the first extensive examination of the large-whale blow microbiome, we present surprising results about the discovery of a large core microbiome that was shared across individual whales from geographically separated populations in two ocean basins. We suggest that this core microbiome, in addition to other microbiome characteristics, could be a useful feature for health monitoring of large whales worldwide. PMID:29034331

Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring.

PubMed

Apprill, Amy; Miller, Carolyn A; Moore, Michael J; Durban, John W; Fearnbach, Holly; Barrett-Lennard, Lance G

2017-01-01

The pulmonary system is a common site for bacterial infections in cetaceans, but very little is known about their respiratory microbiome. We used a small, unmanned hexacopter to collect exhaled breath condensate (blow) from two geographically distinct populations of apparently healthy humpback whales ( Megaptera novaeangliae ), sampled in the Massachusetts coastal waters off Cape Cod ( n = 17) and coastal waters around Vancouver Island ( n = 9). Bacterial and archaeal small-subunit rRNA genes were amplified and sequenced from blow samples, including many of sparse volume, as well as seawater and other controls, to characterize the associated microbial community. The blow microbiomes were distinct from the seawater microbiomes and included 25 phylogenetically diverse bacteria common to all sampled whales. This core assemblage comprised on average 36% of the microbiome, making it one of the more consistent animal microbiomes studied to date. The closest phylogenetic relatives of 20 of these core microbes were previously detected in marine mammals, suggesting that this core microbiome assemblage is specialized for marine mammals and may indicate a healthy, noninfected pulmonary system. Pathogen screening was conducted on the microbiomes at the genus level, which showed that all blow and few seawater microbiomes contained relatives of bacterial pathogens; no known cetacean respiratory pathogens were detected in the blow. Overall, the discovery of a shared large core microbiome in humpback whales is an important advancement for health and disease monitoring of this species and of other large whales. IMPORTANCE The conservation and management of large whales rely in part upon health monitoring of individuals and populations, and methods generally necessitate invasive sampling. Here, we used a small, unmanned hexacopter drone to noninvasively fly above humpback whales from two populations, capture their exhaled breath (blow), and examine the associated microbiome. In the first extensive examination of the large-whale blow microbiome, we present surprising results about the discovery of a large core microbiome that was shared across individual whales from geographically separated populations in two ocean basins. We suggest that this core microbiome, in addition to other microbiome characteristics, could be a useful feature for health monitoring of large whales worldwide.

Completion Summary for Well NRF-16 near the Naval Reactors Facility, Idaho National Laboratory, Idaho

USGS Publications Warehouse

Twining, Brian V.; Fisher, Jason C.; Bartholomay, Roy C.

2010-01-01

In 2009, the U.S. Geological Survey in cooperation with the U.S. Department of Energy's Naval Reactors Laboratory Field Office, Idaho Branch Office cored and completed well NRF-16 for monitoring the eastern Snake River Plain (SRP) aquifer. The borehole was initially cored to a depth of 425 feet below land surface and water samples and geophysical data were collected and analyzed to determine if well NRF-16 would meet criteria requested by Naval Reactors Facility (NRF) for a new upgradient well. Final construction continued after initial water samples and geophysical data indicated that NRF-16 would produce chemical concentrations representative of upgradient aquifer water not influenced by NRF facility disposal, and that the well was capable of producing sustainable discharge for ongoing monitoring. The borehole was reamed and constructed as a Comprehensive Environmental Response Compensation and Liability Act monitoring well complete with screen and dedicated pump. Geophysical and borehole video logs were collected after coring and final completion of the monitoring well. Geophysical logs were examined in conjunction with the borehole core to identify primary flow paths for groundwater, which are believed to occur in the intervals of fractured and vesicular basalt and to describe borehole lithology in detail. Geophysical data also were examined to look for evidence of perched water and the extent of the annular seal after cement grouting the casing in place. Borehole videos were collected to confirm that no perched water was present and to examine the borehole before and after setting the screen in well NRF-16. Two consecutive single-well aquifer tests to define hydraulic characteristics for well NRF-16 were conducted in the eastern SRP aquifer. Transmissivity and hydraulic conductivity averaged from the aquifer tests were 4.8 x 103 ft2/d and 9.9 ft/d, respectively. The transmissivity for well NRF-16 was within the range of values determined from past aquifer tests in other wells near NRF of 4.4 x 102 to 5.1 x 105 ft2/d. Water samples were analyzed for metals, nutrients, total organic carbon, volatile organic compounds, semi-volatile organic compounds, herbicides, pesticides, polychlorinated biphenols, and radionuclides. All chloride, nitrate, and sulfate concentrations were less than background concentrations for the eastern SRP aquifer north of the NRF. Concentrations in water samples for most of the organic compounds and radionuclides were less than the reporting limits and reporting levels.

PNNL Researchers Collect Permafrost Cores in Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

2016-11-23

Permafrost is ground that is frozen for two or more years. In the Arctic, discontinuous regions of this saturated admixture of soil and rock store a large fraction of the Earth’s carbon – about 1672 petagrams (1672 trillion kilograms). As temperatures increase in the Northern Hemisphere, a lot of that carbon may be released to the atmosphere, making permafrost an important factor to represent accurately in global climate models. At Pacific Northwest National Laboratory, a group led by James C. Stegen periodically extracts permafrost core samples from a site near Fairbanks, Alaska. Back at the lab in southeastern Washington State,more » they study the cores for levels of microbial activity, carbon fluxes, hydrologic patterns, and other factors that reveal the dynamics of this consequential layer of soil and rock.« less

Advanced Curation of Current and Future Extraterrestrial Samples

NASA Technical Reports Server (NTRS)

Allen, Carlton C.

2013-01-01

Curation of extraterrestrial samples is the critical interface between sample return missions and the international research community. Curation includes documentation, preservation, preparation, and distribution of samples. The current collections of extraterrestrial samples include: Lunar rocks / soils collected by the Apollo astronauts Meteorites, including samples of asteroids, the Moon, and Mars "Cosmic dust" (asteroid and comet particles) collected by high-altitude aircraft Solar wind atoms collected by the Genesis spacecraft Comet particles collected by the Stardust spacecraft Interstellar dust collected by the Stardust spacecraft Asteroid particles collected by the Hayabusa spacecraft These samples were formed in environments strikingly different from that on Earth. Terrestrial contamination can destroy much of the scientific significance of many extraterrestrial materials. In order to preserve the research value of these precious samples, contamination must be minimized, understood, and documented. In addition the samples must be preserved - as far as possible - from physical and chemical alteration. In 2011 NASA selected the OSIRIS-REx mission, designed to return samples from the primitive asteroid 1999 RQ36 (Bennu). JAXA will sample C-class asteroid 1999 JU3 with the Hayabusa-2 mission. ESA is considering the near-Earth asteroid sample return mission Marco Polo-R. The Decadal Survey listed the first lander in a Mars sample return campaign as its highest priority flagship-class mission, with sample return from the South Pole-Aitken basin and the surface of a comet among additional top priorities. The latest NASA budget proposal includes a mission to capture a 5-10 m asteroid and return it to the vicinity of the Moon as a target for future sampling. Samples, tools, containers, and contamination witness materials from any of these missions carry unique requirements for acquisition and curation. Some of these requirements represent significant advances over methods currently used. New analytical and screening techniques will increase the value of current sample collections. Improved web-based tools will make information on all samples more accessible to researchers and the public. Advanced curation of current and future extraterrestrial samples includes: Contamination Control - inorganic / organic Temperature of preservation - subfreezing / cryogenic Non-destructive preliminary examination - X-ray tomography / XRF mapping / Raman mapping Microscopic samples - handling / sectioning / transport Special samples - unopened lunar cores Informatics - online catalogs / community-based characterization.

Influence of Controlled Drainage and Liquid Dairy Manure Application on Phosphorus Leaching from Intact Soil Cores.

PubMed

Young, Eric O; Geibel, Justin R; Ross, Donald S

2017-01-01

Controlled drainage can reduce nitrate export from tile drainage flow, but its impact on phosphorus (P) loss is largely unknown. We compared P leaching from soil cores treated as free drainage (FD) or controlled drainage (CD) before and after manure application. In August 2012, 16 intact cores (45 cm long, 15 cm diameter) were collected from a grass forage field () located in Chazy, NY, and modified for drainage control and sampling. In Experiment 1 (no manure), initial leachate was defined as FD, and leachate collected 21 d later (valves closed) was considered CD. In Experiment 2, seven cores were randomly assigned to CD or FD. Liquid dairy manure was applied at 1.2 × 10 L ha, followed by simulated rainfall 2 h later. Leachate was sampled on Day 7, 14, and 21. Deionized water was applied at 3.4 cm h over 1 h to mimic a 10-yr rainfall event. Total P (TP), soluble reactive P (SRP), dissolved oxygen, iron (Fe), and pH were measured. Results showed that TP ( = 0.03) and SRP ( = 0.35) were lower for CD prior to manure application. Manure application caused 36- and 42-fold increases in TP and SRP; however, TP was lower for CD at 7 ( = 0.06), 14 ( = 0.003), and 21 d ( = 0.002) of water retention. Mean SRP for CD was nearly 40-fold lower than FD by Day 7 ( = 0.02) and remained low, suggesting CD in the field may reduce P export risk to tile drain flow after manure applications. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

LUNAR SAMPLES - APOLLO XI

NASA Image and Video Library

1969-07-27

S69-45002 (26 July 1969) --- A close-up view of the lunar rocks contained in the first Apollo 11 sample return container. The rock box was opened for the first time in the Vacuum Laboratory of the Manned Spacecraft Center’s Lunar Receiving Laboratory, Building 37, at 3:55 p.m. (CDT), Saturday, July 26, 1969. The gloved hand gives an indication of size. This box also contained the Solar Wind Composition experiment (not shown) and two core tubes for subsurface samples (not shown). These lunar samples were collected by astronauts Neil A. Armstrong and Edwin E. Aldrin Jr. during their lunar surface extravehicular activity on July 20, 1969.

Lunar and Meteorite Thin Sections for Undergraduate and Graduate Studies

NASA Technical Reports Server (NTRS)

Allen, J.; Galindo, C.; Luckey, M.; Reustle, J.; Todd, N.; Allen, C.

2012-01-01

The Johnson Space Center (JSC) has the unique responsibility to curate NASA's extraterrestrial samples from past and future missions. Curation includes documentation, preservation, preparation, and distribution of samples for research, education, and public outreach. Between 1969 and 1972 six Apollo missions brought back 382 kilograms of lunar rocks, core samples, pebbles, sand and dust from the lunar surface. JSC also curates meteorites collected on US expeditions to Antarctica including rocks from Moon, Mars, and many asteroids including Vesta. Studies of rock and soil samples from the Moon and meteorites continue to yield useful information about the early history of the Moon, the Earth, and the inner solar system.

Physical and hydraulic properties of volcanic rocks from Yucca Mountain, Nevada

USGS Publications Warehouse

Flint, Lorraine E.

2003-01-01

A database of physical and hydraulic properties was developed for rocks in the unsaturated zone at Yucca Mountain, Nevada, a site under consideration as a geologic repository for high-level radioactive waste. The 5320 core samples were collected from 23 shallow (<100 m) and 10 deep (500-1000 m) vertical boreholes. Hydrogeologic units have been characterized in the unsaturated zone [Flint, 1998] that represent rocks with ranges of welding, lithophysae, and high and low temperature alteration (as a result of the depositional, cooling, and alterational history of the lithostratigraphic layers). Lithostratigraphy, the hydrogeologic unit, and the corresponding properties are described. In addition, the physical properties of bulk density, porosity, and particle density; the hydraulic properties of saturated hydraulic conductivity and moisture retention characteristics; and the field water content were measured and compiled for each core sample.

Chemical data for bottom sediment in Mountain Creek Lake, Dallas, Texas, 1999-2000

USGS Publications Warehouse

Wilson, Jennifer T.

2002-01-01

Mountain Creek Lake is a reservoir adjacent to the Naval Weapons Industrial Reserve Plant and the former Naval Air Station in Dallas, Texas. The U.S. Geological Survey began studies of water, sediment, and biota in the reservoir in 1994 after a Resource Conservation and Recovery Act Facility Investigation detected concentrations of organic chemicals on both facilities. Additional reservoir bottom sediment samples were collected during December 1999–January 2000 at the request of the Southern Division Naval Facilities Engineering Command to further define the occurrence and distribution of selected constituents and to supplement available data. The U.S. Geological Survey National Water Quality Laboratory analyzed bottom-sediment samples from 16 box cores and 5 gravity cores for major and trace elements, organochlorine pesticides, polychlorinated biphenyls, polycyclic aromatic hydrocarbons, grain size, and cesium-137.

Towards a novel continuous sublimation extraction/laser spectroscopy method for greenhouse gas measurements in the oldest ice

NASA Astrophysics Data System (ADS)

Bereiter, Bernhard; Maechler, Lars; Schmitt, Jochen; Walther, Remo; Tuzson, Béla; Scheidegger, Philipp; Emmenegger, Lukas; Fischer, Hubertus

2017-04-01

Ice cores are unique archives of ancient air providing the only direct record of past greenhouse gases - key in reconstructing the roles of greenhouse gases in past climate changes. The European Partnership in Ice Core Sciences (EuroPICS) plans to drill an ice core extending over 1.5 Ma, nearly doubling the time span of the existing greenhouse record and covering the time period of the Mid Pleistocene Transition. The ice covering the time interval from 1-1.5 Ma is expected to be close to the bedrock and, due to glacial flow, extremely thinned. A 10,000 yr glacial/interglacial transition can be compressed in 1 m of ice. The targeted 100 yr resolution therefore constrains the sample size to 15-30 g containing only 1-2ml STP air. Within the deepSlice project we aim to unlock such atmospheric archives in extremely thinned ice by developing a novel coupled semi-continuous sublimation extraction/laser spectroscopy system. Vacuum sublimation, with an infrared source, has been chosen as extraction method as it allows 100% gas extraction of all gas species from ice without changing the isotopic composition of CO2. In order to reduce ice waste and accelerate sample throughput, we are building a sublimation extraction system that is able to continuously sublimate an ice-core section and subsequently collect discrete full air samples. For the gas analytics, we develop a custom-made mid-infrared laser spectrometer allowing simultaneous measurement of the CO2, CH4 and N2O concentrations as well as the isotopic composition of CO2 on air samples of only 1-2 ml STP. The two systems will be coupled via cryo-trapping of the sample air in dip tubes, followed by expansion of the sample air into the laser spectrometer. Due to the nondestructive laser technique, the air sample can be recollected and reused for further analytics.

Core vocabulary of young children with Down syndrome.

PubMed

Deckers, Stijn R J M; Van Zaalen, Yvonne; Van Balkom, Hans; Verhoeven, Ludo

2017-06-01

The aim of this study was to develop a core vocabulary list for young children with intellectual disabilities between 2 and 7 years of age because data from this population are lacking in core vocabulary literature. Children with Down syndrome are considered one of the most valid reference groups for researching developmental patterns in children with intellectual disabilities; therefore, spontaneous language samples of 30 Dutch children with Down syndrome were collected during three different activities with multiple communication partners (free play with parents, lunch- or snack-time at home or at school, and speech therapy sessions). Of these children, 19 used multimodal communication, primarily manual signs and speech. Functional word use in both modalities was transcribed. The 50 most frequently used core words accounted for 67.2% of total word use; 16 words comprised core vocabulary, based on commonality. These data are consistent with similar studies related to the core vocabularies of preschoolers and toddlers with typical development, although the number of nouns present on the core vocabulary list was higher for the children in the present study. This finding can be explained by manual sign use of the children with Down syndrome and is reflective of their expressive vocabulary ages.

The Index to Marine and Lacustrine Geological Samples: Improving Sample Accessibility and Enabling Current and Future Research

NASA Astrophysics Data System (ADS)

Moore, C.

2011-12-01

The Index to Marine and Lacustrine Geological Samples is a community designed and maintained resource enabling researchers to locate and request sea floor and lakebed geologic samples archived by partner institutions. Conceived in the dawn of the digital age by representatives from U.S. academic and government marine core repositories and the NOAA National Geophysical Data Center (NGDC) at a 1977 meeting convened by the National Science Foundation (NSF), the Index is based on core concepts of community oversight, common vocabularies, consistent metadata and a shared interface. Form and content of underlying vocabularies and metadata continue to evolve according to the needs of the community, as do supporting technologies and access methodologies. The Curators Consortium, now international in scope, meets at partner institutions biennially to share ideas and discuss best practices. NGDC serves the group by providing database access and maintenance, a list server, digitizing support and long-term archival of sample metadata, data and imagery. Over three decades, participating curators have performed the herculean task of creating and contributing metadata for over 195,000 sea floor and lakebed cores, grabs, and dredges archived in their collections. Some partners use the Index for primary web access to their collections while others use it to increase exposure of more in-depth institutional systems. The Index is currently a geospatially-enabled relational database, publicly accessible via Web Feature and Web Map Services, and text- and ArcGIS map-based web interfaces. To provide as much knowledge as possible about each sample, the Index includes curatorial contact information and links to related data, information and images; 1) at participating institutions, 2) in the NGDC archive, and 3) at sites such as the Rolling Deck to Repository (R2R) and the System for Earth Sample Registration (SESAR). Over 34,000 International GeoSample Numbers (IGSNs) linking to SESAR are included in anticipation of opportunities for interconnectivity with Integrated Earth Data Applications (IEDA) systems. To promote interoperability and broaden exposure via the semantic web, NGDC is publishing lithologic classification schemes and terminology used in the Index as Simple Knowledge Organization System (SKOS) vocabularies, coordinating with R2R and the Consortium for Ocean Leadership for consistency. Availability in SKOS form will also facilitate use of the vocabularies in International Standards Organization (ISO) 19115-2 compliant metadata records. NGDC provides stewardship for the Index on behalf of U.S. repositories as the NSF designated "appropriate National Data Center" for data and metadata pertaining to sea floor samples as specified in the 2011 Division of Ocean Sciences Sample and Data Policy, and on behalf of international partners via a collocated World Data Center. NGDC operates on the Open Archival Information System (OAIS) reference model. Active Partners: Antarctic Marine Geology Research Facility, Florida State University; British Ocean Sediment Core Research Facility; Geological Survey of Canada; Integrated Ocean Drilling Program; Lamont-Doherty Earth Observatory; National Lacustrine Core Repository, University of Minnesota; Oregon State University; Scripps Institution of Oceanography; University of Rhode Island; U.S. Geological Survey; Woods Hole Oceanographic Institution.

Distribution of clay minerals on the Alaskan margin near Barrow Canyon revealed by Diffuse Spectral Reflectance measurements

NASA Astrophysics Data System (ADS)

Orsburn, C.; Ortiz, J. D.; Polyak, L.; Grebmeier, J. M.; Darby, D.

2007-12-01

Sediment clay mineral assemblages provide an excellent means of assessing the provenance of Arctic sediment due to the variety of sediment transport mechanisms at work and the existence of distinct weathering sources from differing bedrock geology. During HOTRAX Leg 1 aboard the USCG Ice breaker Healy (cruise HLY0501), we collected jumbo piston cores on the Alaskan margin near Barrow Canyon which provide detailed Holocene sedimentary records. Measurements of Diffuse Spectral Reflectance (DSR) were collected at 1cm resolution from the split surface of the cores using a Minolta CM-2600d UV/VIS spectrophotometer (400-700nm wavelength range; 10nm resolution; 3mm spot size). To interpret the resulting downcore records, we present a preliminary study using 28 coretop sediment samples collected by the Shelf-Basin Interaction program in 2004 arrayed in four transects across the shelf near Barrow Canyon. The samples were analyzed using an ASD Labspec Pro FR UV/VIS/NIR spectrometer (250-2500nm wavelength range, 2-10nm resolution; 20mm spot size). Our results indicate that the measurements from the two instruments are offset by constant factors, but can be easily compared. To estimate the clay mineralogy of the cores, we decomposed the matrix of DSR measurements from the coretop and downcore samples using principle component analysis and compared the resulting factor score patterns with mineral diffuse spectral reflectance signatures from known samples measured in our lab or available from version 5 of the USGS Digital Spectral Library. The three leading modes extracted by principle component analysis of the downcore samples are applicable to the coretops. We infer that the first principle component mode relates to smectite, the second to chlorite, and the third to a mixture of illite and goethite (herein referred to as illite - goethite). The geographic and bathymetric trends in the coretop data indicate that (1) the smectite and illite - goethite components both increase with depth and reach greater values in the two western transects than in the two eastern transects closest to the coast and Barrow Canyon, (2) the smectite and illite- goethite components are anticorrelated in the two western transects, but not in the two eastern transects, (3) chlorite decreases with depth and is highest in the two transects closest to Barrow Canyon. These results suggest that the chlorite on the Alaskan margin is transported by nearshore currents from the Bering Straight and then by bottom currents flowing through the Barrow Canyon. Accordingly, we interpret downcore chlorite peaks inferred from DSR measurements in our sediment cores as evidence of times of enhanced input of Pacific water to the Alaskan Margin.

Elevational and Spatial Gradients of Atmospheric Metal Pollution in the North Pacific

NASA Astrophysics Data System (ADS)

Jongebloed, U. A.; Osterberg, E. C.; Kreutz, K. J.; Ferris, D. G.; Campbell, S.; Saylor, P. L.; Winski, D.; Handley, M.

2017-12-01

The industrial revolution has led to a several-fold increase in the atmospheric concentrations of heavy metals and metalloids including Pb, Cd, Cu, Zn, Hg and As. Modern emissions inventories identify Asia as the largest emitter of many of these toxic pollutants, which are subsequently transported eastwards across the North Pacific Ocean by prevailing westerly winds in the mid-upper troposphere. Previous ice cores collected from the Yukon Territory in the eastern North Pacific reveal evolution-dependent metal pollution histories; the highest (5300 m elevation) core from Mt. Logan records a nearly pure trans-Pacific Asian pollution record, whereas cores from lower sites like the Eclipse Icefield (3017 m) record a complex combination of Asian and more local North American emission. However, it is unclear if this elevation gradient of pollution sources is found in other regions of the North Pacific. Furthermore, the previous ice core records end in the late 1990's, before efforts by some Asian nations to reduce metal pollution, and it is unknown if North Pacific atmospheric metal concentrations have declined in response to these efforts. Here we investigate metal and metalloid concentrations and sources recorded in ice core and snow pit samples recovered from a vertical transect spanning 2200 - 5242 m within Denali National Park in the Central Alaska Range. We compare these metal concentrations and crustal enrichment factors to data from the Yukon Territory to investigate North Pacific regional metal gradients. We also present preliminary results from a new 60 m ice core from the Eclipse Icefield to evaluate recent trends in metal concentrations since the end of the Mt. Logan and original Eclipse records in 1998, and compare this to the recent metal pollution history recorded in the 2013 Denali Ice Core collected from the summit plateau (3900 m) of Mt. Hunter.

Upper Cretaceous and Lower Jurassic strata in shallow cores on the Chukchi Shelf, Arctic Alaska: Chapter C in Studies by the U.S. Geological Survey in Alaska, vol. 15

USGS Publications Warehouse

Houseknecht, David W.; Craddock, William H.; Lease, Richard O.

2016-02-12

Shallow cores collected in the 1980s on the Chukchi Shelf of western Arctic Alaska sampled pre-Cenozoic strata whose presence, age, and character are poorly known across the region. Five cores from the Herald Arch foreland contain Cenomanian to Coniacian strata, as documented by biostratigraphy, geochronology, and thermochronology. Shallow seismic reflection data collected during the 1970s and 1980s show that these Upper Cretaceous strata are truncated near the seafloor by subtle angular unconformities, including the Paleogene mid-Brookian unconformity in one core and the Pliocene-Pleistocene unconformity in four cores. Sedimentary structures and lithofacies suggest that Upper Cretaceous strata were deposited in a low accommodation setting that ranged from low-lying coastal plain (nonmarine) to muddy, shallow-marine environments near shore. These observations, together with sparse evidence from the adjacent western North Slope, suggest that Upper Cretaceous strata likely were deposited across all of Arctic Alaska.A sixth core from the Herald Arch contains lower Toarcian marine strata, indicated by biostratigraphy, truncated by a Neogene or younger unconformity. These Lower Jurassic strata evidently were deposited south of the arch, buried structurally to high levels of thermal maturity during the Early Cretaceous, and uplifted on the Herald thrust-fault system during the mid to Late Cretaceous. These interpretations are based on regional stratigraphy and apatite fission-track data reported in a complementary report and are corroborated by the presence of recycled palynomorphs of Early Jurassic age and high thermal maturity found in Upper Cretaceous strata in two of the foreland cores. This dataset provides evidence that uplift and exhumation of the Herald thrust belt provided sediment to the foreland during the Late Cretaceous.

Third-generation site characterization: Cryogenic core collection, nuclear magnetic resonance, and electrical resistivity

NASA Astrophysics Data System (ADS)

Kiaalhosseini, Saeed

In modern contaminant hydrology, management of contaminated sites requires a holistic characterization of subsurface conditions. Delineation of contaminant distribution in all phases (i.e., aqueous, non-aqueous liquid, sorbed, and gas), as well as associated biogeochemical processes in a complex heterogeneous subsurface, is central to selecting effective remedies. Arguably, a factor contributing to the lack of success of managing contaminated sites effectively has been the limitations of site characterization methods that rely on monitoring wells and grab sediment samples. The overarching objective of this research is to advance a set of third-generation (3G) site characterization methods to overcome shortcomings of current site characterization techniques. 3G methods include 1) cryogenic core collection (C3) from unconsolidated geological subsurface to improve recovery of sediments and preserving key attributes, 2) high-throughput analysis (HTA) of frozen core in the laboratory to provide high-resolution, depth discrete data of subsurface conditions and processes, 3) resolution of non-aqueous phase liquid (NAPL) distribution within the porous media using a nuclear magnetic resonance (NMR) method, and 4) application of a complex resistivity method to track NAPL depletion in shallow geological formation over time. A series of controlled experiments were conducted to develop the C 3 tools and methods. The critical aspects of C3 are downhole circulation of liquid nitrogen via a cooling system, the strategic use of thermal insulation to focus cooling into the core, and the use of back pressure to optimize cooling. The C3 methods were applied at two contaminated sites: 1) F.E. Warren (FEW) Air Force Base near Cheyenne, WY and 2) a former refinery in the western U.S. The results indicated that the rate of core collection using the C3 methods is on the order of 30 foot/day. The C3 methods also improve core recovery and limits potential biases associated with flowing sands. HTA of frozen core was employed at the former refinery and FEW. Porosity and fluid saturations (i.e., aqueous, non-aqueous liquid, and gas) from the former refinery indicate that given in situ freezing, the results are not biased by drainage of pore fluids from the core during sample collection. At FEW, a comparison between the results of HTA of the frozen core collected in 2014 and the results of site characterization using unfrozen core, (second-generation (2G) methods) at the same locations (performed in 2010) indicate consistently higher contaminant concentrations using C 3. Many factors contribute to the higher quantification of contaminant concentrations using C3. The most significant factor is the preservation of the sediment attributes, in particular, pore fluids and volatile organic compounds (VOCs) in comparison to the unfrozen conventional sediment core. The NMR study was performed on laboratory-fabricated sediment core to resolve NAPL distribution within the porous media qualitatively and quantitatively. The fabricated core consisted of Colorado silica sand saturated with deionized water and trichloroethylene (TCE). The cores were scanned with a BRUKER small-animal scanner (2.3 Tesla, 100 MHz) at 20 °C and while the core was frozen at -25 °C. The acquired images indicated that freezing the water within the core suppressed the NMR signals of water-bound hydrogen. The hydrogen associated with TCE was still detectable since the TCE was in its liquid state (melting point of TCE is -73 °C). Therefore, qualitative detection of TCE within the sediment core was performed via the NMR scanning by freezing the water. A one-dimensional NMR scanning method was used for quantification of TCE mass distribution within the frozen core. However, the results indicated inconsistency in estimating the total TCE mass within the porous media. Downhole NMR logging was performed at the former refinery in the western U.S. to detect NAPL and to discriminate NAPL from water in the formation. The results indicated that detection of NMR signals to discriminate NAPL from water is compromised by the noise stemming from the active facilities and/or power lines passing over the site. A laboratory experiment was performed to evaluate the electrical response of unconsolidated porous media through time (30 days) while NAPL was being depleted. Sand columns (Colorado silica sand) contaminated with methyl tert-butyl ether (MTBE, a light non-aqueous phase liquid (LNAPL)) were studied. A multilevel electrode system was used to measure electrical resistivity of impacted sand by imposing alternative current. The trend of reduction in resistivity through the depth of columns over time followed depletion of LNAPL by volatilization. Finally, a field experiment was performed at the former refinery in the western U.S. to track natural losses of LNAPL over time. Multilevel systems consisting of water samplers, thermocouples, and electrodes were installed at a clean zone (background zone) and an LNAPL-impacted zone. In situ measurements of complex resistivity and temperature were taken and water sampling was performed for each depth (from 3 to 14 feet below the ground surface at one-foot spacing) within almost a year. At both locations, the results indicated decreases in apparent resistivity below the water table over time. This trend was supported by the geochemistry of the pore fluids. Overall, results indicate that application of the electrical resistivity method to track LNAPL depletion at field sites is difficult due to multiple conflicting factors affecting the geoelectrical response of LNAPL-impacted zones over time.

Proteomic analysis of formalin-fixed paraffin embedded tissue by MALDI imaging mass spectrometry

PubMed Central

Casadonte, Rita; Caprioli, Richard M

2012-01-01

Archived formalin-fixed paraffin-embedded (FFPE) tissue collections represent a valuable informational resource for proteomic studies. Multiple FFPE core biopsies can be assembled in a single block to form tissue microarrays (TMAs). We describe a protocol for analyzing protein in FFPE -TMAs using matrix-assisted laser desorption/ionization (MAL DI) imaging mass spectrometry (IMS). The workflow incorporates an antigen retrieval step following deparaffinization, in situ trypsin digestion, matrix application and then mass spectrometry signal acquisition. The direct analysis of FFPE -TMA tissue using IMS allows direct analysis of multiple tissue samples in a single experiment without extraction and purification of proteins. The advantages of high speed and throughput, easy sample handling and excellent reproducibility make this technology a favorable approach for the proteomic analysis of clinical research cohorts with large sample numbers. For example, TMA analysis of 300 FFPE cores would typically require 6 h of total time through data acquisition, not including data analysis. PMID:22011652

PLUMED 2: New feathers for an old bird

NASA Astrophysics Data System (ADS)

Tribello, Gareth A.; Bonomi, Massimiliano; Branduardi, Davide; Camilloni, Carlo; Bussi, Giovanni

2014-02-01

Enhancing sampling and analyzing simulations are central issues in molecular simulation. Recently, we introduced PLUMED, an open-source plug-in that provides some of the most popular molecular dynamics (MD) codes with implementations of a variety of different enhanced sampling algorithms and collective variables (CVs). The rapid changes in this field, in particular new directions in enhanced sampling and dimensionality reduction together with new hardware, require a code that is more flexible and more efficient. We therefore present PLUMED 2 here—a complete rewrite of the code in an object-oriented programming language (C++). This new version introduces greater flexibility and greater modularity, which both extends its core capabilities and makes it far easier to add new methods and CVs. It also has a simpler interface with the MD engines and provides a single software library containing both tools and core facilities. Ultimately, the new code better serves the ever-growing community of users and contributors in coping with the new challenges arising in the field.

Properties of Subsurface Soil Cores from Four Geologic Provinces Surrounding Mars Desert Research Station, Utah: Characterizing Analog Martian Soil in a Human Exploration Scenario

NASA Technical Reports Server (NTRS)

Stoker, C. R.; Clarke, J. D. A.; Direito, S.; Foing, B.

2011-01-01

The DOMEX program is a NASA-MMAMA funded project featuring simulations of human crews on Mars focused on science activities that involve collecting samples from the subsurface using both manual and robotic equipment methods and analyzing them in the field and post mission. A crew simulating a human mission to Mars performed activities focused on subsurface science for 2 weeks in November 2009 at Mars Desert Research Station near Hanksville, Utah --an important chemical and morphological Mars analog site. Activities performed included 1) survey of the area to identify geologic provinces, 2) obtaining soil and rock samples from each province and characterizing their mineralogy, chemistry, and biology; 3) site selection and reconnaissance for a future drilling mission; 4) deployment and testing of Mars Underground Mole, a percussive robotic soil sampling device; and 5) recording and analyzing how crew time was used to accomplish these tasks. This paper summarizes results from analysis of soil cores

Meeting report: advancing practical applications of biodiversity ontologies

PubMed Central

2014-01-01

We describe the outcomes of three recent workshops aimed at advancing development of the Biological Collections Ontology (BCO), the Population and Community Ontology (PCO), and tools to annotate data using those and other ontologies. The first workshop gathered use cases to help grow the PCO, agreed upon a format for modeling challenging concepts such as ecological niche, and developed ontology design patterns for defining collections of organisms and population-level phenotypes. The second focused on mapping datasets to ontology terms and converting them to Resource Description Framework (RDF), using the BCO. To follow-up, a BCO hackathon was held concurrently with the 16th Genomics Standards Consortium Meeting, during which we converted additional datasets to RDF, developed a Material Sample Core for the Global Biodiversity Information Framework, created a Web Ontology Language (OWL) file for importing Darwin Core classes and properties into BCO, and developed a workflow for converting biodiversity data among formats.

Over a century of PAH contamination history to New York City

NASA Astrophysics Data System (ADS)

Yan, B.; Bopp, R.; Chillrud, S. N.; Abrajano, T.

2015-12-01

Spatially and temporally integrated urban lake sediments have the potential to be used for reconstructing air contamination history, with data being available even before the start of urban air quality monitoring. In a previous study, fine-grained sediment sample cores were collected from the Lower Hudson River basin and dated via radionuclides. An objective source appointment method has been established based on several source-sensitive molecular indicators we found. An over 100 year historical record of energy usage in New York City has been reconstructed in cores from Central Park Lake. The reconstructed history is consistent with historical energy consumption data of NYS complied by the US Department of Energy. Wood combustion was dominant one century ago in Manhattan, followed by coal combustion dominance from the 1900s to the 1940s. Petroleum combustion, mainly from motor vehicles in Manhattan, increased gradually from the 1920s, and became the dominant PAH input after 1940s. In most samples collected from elsewhere in the lower Hudson River Basin, petroleum combustion was the dominant PAH input in the last half century. From 2001 to 2012, indoor and outdoor air filter samples were collected from NYC apartments; though non-volatile PAH levels were quite stable, pyrene, which is a semi-volatile PAHs compound, increased over these 12 years, especially in the heating season. The burning of No.6 oil in NYC boilers is thought to lead to this increase and the recent effort in switching No. 6 heating oil to No.2 oil has the potential to overturn the increasing trend.

A UAV-based active AirCore system for measurements of greenhouse gases

NASA Astrophysics Data System (ADS)

Andersen, Truls; Scheeren, Bert; Peters, Wouter; Chen, Huilin

2018-05-01

We developed and field-tested an unmanned aerial vehicle (UAV)-based active AirCore for atmospheric mole fraction measurements of CO2, CH4, and CO. The system applies an alternative way of using the AirCore technique invented by NOAA. As opposed to the conventional concept of passively sampling air using the atmospheric pressure gradient during descent, the active AirCore collects atmospheric air samples using a pump to pull the air through the tube during flight, which opens up the possibility to spatially sample atmospheric air. The active AirCore system used for this study weighs ˜ 1.1 kg. It consists of a ˜ 50 m long stainless-steel tube, a small stainless-steel tube filled with magnesium perchlorate, a KNF micropump, and a 45 µm orifice working together to form a critical flow of dried atmospheric air through the active AirCore. A cavity ring-down spectrometer (CRDS) was used to analyze the air samples on site not more than 7 min after landing for mole fraction measurements of CO2, CH4, and CO. We flew the active AirCore system on a UAV near the atmospheric measurement station at Lutjewad, located in the northwest of the city of Groningen in the Netherlands. Five consecutive flights took place over a 5 h period on the same morning, from sunrise until noon. We validated the measurements of CO2 and CH4 from the active AirCore against those from the Lutjewad station at 60 m. The results show a good agreement between the measurements from the active AirCore and the atmospheric station (N = 146; R2CO2: 0.97 and R2CH4: 0.94; and mean differences: ΔCO2: 0.18 ppm and ΔCH4: 5.13 ppb). The vertical and horizontal resolution (for CH4) at typical UAV speeds of 1.5 and 2.5 m s-1 were determined to be ±24.7 to 29.3 and ±41.2 to 48.9 m, respectively, depending on the storage time. The collapse of the nocturnal boundary layer and the buildup of the mixed layer were clearly observed with three consecutive vertical profile measurements in the early morning hours. Besides this, we furthermore detected a CH4 hotspot in the coastal wetlands from a horizontal flight north to the dike, which demonstrates the potential of this new active AirCore method to measure at locations where other techniques have no practical access.

Seismic structures in the inner and outer core constrained by the PKP observations near the caustic distance range

NASA Astrophysics Data System (ADS)

Yu, W.; Wen, L.; Niu, F.

2002-05-01

We have extensively collected PKP waveforms around the PKP caustic distance range (141o - 147o) recorded in several dense regional arrays and the Global Seismic Network covering from 1990 to 2000. PKP observations at this distance range (141o - 147o) are usually purposely avoided in travel time analyses, because of the interference of various PKP branches. The observations there, however, will be extremely useful for constraining the seismic structures at both the top of the inner core and the bottom of the outer core. Moreover, because PKIKP phases sample a depth range of 100 km - 170 km below the inner-core boundary at this distant range, their observations fill the sampling depth gap between the PKiKP-PKIKP observations at the smaller distances and the PKPbc-PKIKP phases at the larger distances. Before the PKP caustics (141o - 145o), the diffracted PKP phases near the B caustics (PKPBdiff) and PKiKP phases are discernible in the long-period seismograms, and their differential travel times and waveforms could be used to constrain seismic structures at the bottom of the outer core and/or at the base of the mantle. The observed long-period PKiKP-PKPBdiff waveforms exhibit a hemispheric difference between those sampling the "eastern" and "western" hemispheres, with those sampling the "western" hemisphere showing larger time separations between the two phases. These observations can be explained by models with P velocity gradients of 0.0806 (km/s)/ 200 km for the "western" hemisphere and 0.114 (km/s)/200 km for the "eastern" hemisphere at the bottom of the outer core. Alternatively, these observations can also be explained by models with different velocity structures at the bottom 200 km of the mantle with P velocity variations in an order of 3 percent with respect to PREM. Broadband PKP observations after the PKP caustics (145o - 147o), on the other hand, provide high-quality constraints on the seismic structures at both the top of the inner core and the bottom of the outer core, as PKPbc phases can be used as excellent reference phases. We explore seismic models in both the bottom of the outer core and the top of the inner core, which can consistently explain the seismic observations at the caustic distance range (141o - 147o) and the PKiKP-PKIKP observations at the closer distances (Niu and Wen, Nature, 410, 1081-1084, 2001, Wen and Niu, JGR, submitted).

Hydrothermal minerals and microstructures in the Silangkitang geothermal field along the Great Sumatran fault zone, Sumatra, Indonesia

USGS Publications Warehouse

Moore, Diane E.; Hickman, S.; Lockner, D.A.; Dobson, P.F.

2001-01-01

Detailed study of core samples of silicic tuff recovered from three geothermal wells along the strike-slip Great Sumatran fault zone near Silangkitang, North Sumatra, supports a model for enhanced hydrothermal circulation adjacent to this major plate-boundary fault. Two wells (A and C) were drilled nearly vertically ??1 km southwest of the eastern (i.e., the principal) fault trace, and the third, directional well (B) was drilled eastward from the site of well A to within ??100 m of the principal fault trace. The examined core samples come from depths of 1650-2120 m at measured well temperatures of 180-320 ??C. The samples collected near the principal fault trace have the highest temperatures, the largest amount of secondary pore space that correlates with high secondary permeability, and the most extensive hydrothermal mineral development. Secondary permeability and the degree of hydrothermal alteration decrease toward the southwestern margin of the fault zone. These features indicate episodic, localized flow of hot, possibly CO2-rich fluids within the fault zone. The microstructure populations identified in the core samples correlate to the subsidiary fault patterns typical of strike-slip faults. The geothermal reservoir appears to be centered on the fault zone, with the principal fault strands and adjoining, highly fractured and hydrothermally altered rock serving as the main conduits for vertical fluid flow and advective heat transport from deeper magmatic sources.

The Benthic Exchange of O2, N2 and Dissolved Nutrients Using Small Core Incubations.

PubMed

Owens, Michael S; Cornwell, Jeffrey C

2016-08-03

The measurement of sediment-water exchange of gases and solutes in aquatic sediments provides data valuable for understanding the role of sediments in nutrient and gas cycles. After cores with intact sediment-water interfaces are collected, they are submerged in incubation tanks and kept under aerobic conditions at in situ temperatures. To initiate a time course of overlying water chemistry, cores are sealed without bubbles using a top cap with a suspended stirrer. Time courses of 4-7 sample points are used to determine the rate of sediment water exchange. Artificial illumination simulates day-time conditions for shallow photosynthetic sediments, and in conjunction with dark incubations can provide net exchanges on a daily basis. The net measurement of N2 is made possible by sampling a time course of dissolved gas concentrations, with high precision mass spectrometric analysis of N2:Ar ratios providing a means to measure N2 concentrations. We have successfully applied this approach to lakes, reservoirs, estuaries, wetlands and storm water ponds, and with care, this approach provides valuable information on biogeochemical balances in aquatic ecosystems.

Estimation of groundwater flow from temperature monitoring in a borehole heat exchanger during a thermal response test

NASA Astrophysics Data System (ADS)

Yoshioka, Mayumi; Takakura, Shinichi; Uchida, Youhei

2018-05-01

To estimate the groundwater flow around a borehole heat exchanger (BHE), thermal properties of geological core samples were measured and a thermal response test (TRT) was performed in the Tsukuba upland, Japan. The thermal properties were measured at 57 points along a 50-m-long geological core, consisting predominantly of sand, silt, and clay, drilled near the BHE. In this TRT, the vertical temperature in the BHE was also monitored during and after the test. Results for the thermal properties of the core samples and from the monitoring indicated that groundwater flow enhanced thermal transfers, especially at shallow depths. The groundwater velocities around the BHE were estimated using a two-dimensional numerical model with monitoring data on temperature changes. According to the results, the estimated groundwater velocity was generally consistent with hydrogeological data from previous studies, except for the data collected at shallow depths consisting of a clay layer. The reasons for this discrepancy at shallow depths were predicted to be preferential flow and the occurrence of vertical flow through the BHE grout, induced by the hydrogeological conditions.

Collective translational and rotational Monte Carlo cluster move for general pairwise interaction

NASA Astrophysics Data System (ADS)

Růžička, Štěpán; Allen, Michael P.

2014-09-01

Virtual move Monte Carlo is a cluster algorithm which was originally developed for strongly attractive colloidal, molecular, or atomistic systems in order to both approximate the collective dynamics and avoid sampling of unphysical kinetic traps. In this paper, we present the algorithm in the form, which selects the moving cluster through a wider class of virtual states and which is applicable to general pairwise interactions, including hard-core repulsion. The newly proposed way of selecting the cluster increases the acceptance probability by up to several orders of magnitude, especially for rotational moves. The results have their applications in simulations of systems interacting via anisotropic potentials both to enhance the sampling of the phase space and to approximate the dynamics.

River-plume sedimentation and 210Pb/7Be seabed delivery on the Mississippi River delta front

NASA Astrophysics Data System (ADS)

Keller, Gregory; Bentley, Samuel J.; Georgiou, Ioannis Y.; Maloney, Jillian; Miner, Michael D.; Xu, Kehui

2017-06-01

To constrain the timing and processes of sediment delivery and submarine mass-wasting events spanning the last few decades on the Mississippi River delta front, multi-cores and gravity cores (0.5 and <3 m length respectively) were collected seaward of the Mississippi River Southwest Pass in 25-75 m water depth in 2014. The cores were analyzed for radionuclide activity (7Be, 210Pb, 137Cs), grain size, bulk density, and fabric (X-radiography). Core sediments are faintly bedded, sparsely bioturbated, and composed mostly of clay and fine silt. Short-term sedimentation rates (from 7Be) are 0.25-1.5 mm/day during river flooding, while longer-term accumulation rates (from 210Pb) are 1.3-7.9 cm/year. In most cores, 210Pb activity displays undulatory profiles with overall declining activity versus depth. Undulations are not associated with grain size variations, and are interpreted to represent variations in oceanic 210Pb scavenging by river-plume sediments. The 210Pb profile of one gravity core from a mudflow gully displays uniform basal excess activity over a zone of low and uniform bulk density, interpreted to be a mass-failure event that occurred 9-18 years before core collection. Spatial trends in sediment deposition (from 7Be) and accumulation (from 210Pb) indicate that proximity to the river mouth has stronger influence than local facies (mudflow gully, depositional lobe, prodelta) over the timeframe and seabed depth represented by the cores (<40 years, <3 m length). This may be explained by rapid proximal sediment deposition from river plumes coupled with infrequent tropical cyclone activity near the delta in the last 7 years (2006-2013), and by the location of most sediment failure surfaces (from mass flows indicated by parallel geophysical studies) deeper than the core-sampling depths of the present study.

Pore-water extraction from unsaturated tuff by triaxial and one-dimensional compression methods, Nevada Test Site, Nevada

USGS Publications Warehouse

Mower, Timothy E.; Higgins, Jerry D.; Yang, In C.; Peters, Charles A.

1994-01-01

Study of the hydrologic system at Yucca Mountain, Nevada, requires the extraction of pore-water samples from welded and nonwelded, unsaturated tuffs. Two compression methods (triaxial compression and one-dimensional compression) were examined to develop a repeatable extraction technique and to investigate the effects of the extraction method on the original pore-fluid composition. A commercially available triaxial cell was modified to collect pore water expelled from tuff cores. The triaxial cell applied a maximum axial stress of 193 MPa and a maximum confining stress of 68 MPa. Results obtained from triaxial compression testing indicated that pore-water samples could be obtained from nonwelded tuff cores that had initial moisture contents as small as 13 percent (by weight of dry soil). Injection of nitrogen gas while the test core was held at the maximum axial stress caused expulsion of additional pore water and reduced the required initial moisture content from 13 to 11 percent. Experimental calculations, together with experience gained from testing moderately welded tuff cores, indicated that the triaxial cell used in this study could not apply adequate axial or confining stress to expel pore water from cores of densely welded tuffs. This concern led to the design, fabrication, and testing of a one-dimensional compression cell. The one-dimensional compression cell used in this study was constructed from hardened 4340-alloy and nickel-alloy steels and could apply a maximum axial stress of 552 MPa. The major components of the device include a corpus ring and sample sleeve to confine the sample, a piston and base platen to apply axial load, and drainage plates to transmit expelled water from the test core out of the cell. One-dimensional compression extracted pore water from nonwelded tuff cores that had initial moisture contents as small as 7.6 percent; pore water was expelled from densely welded tuff cores that had initial moisture contents as small as 7.7 percent. Injection of nitrogen gas at the maximum axial stress did not produce additional pore water from nonwelded tuff cores, but was critical to recovery of pore water from densely welded tuff cores. Gas injection reduced the required initial moisture content in welded tuff cores from 7.7 to 6.5 percent. Based on the mechanical ability of a pore-water extraction method to remove water from welded and nonwelded tuff cores, one-dimensional compression is a more effective extraction method than triaxial compression. However, because the effects that one-dimensional compression has on pore-water chemistry are not completely understood, additional testing will be needed to verify that this method is suitable for pore-water extraction from Yucca Mountain tuffs.

Evaluation of aerosol composition changes in the last 60 years around southeastern Greenland by analyzing micro-inclusions in the SE-Dome ice core using Raman spectroscopy.

NASA Astrophysics Data System (ADS)

Ando, T.; Iizuka, Y.; Ohno, H.; Sugiyama, S.

2017-12-01

Emission regulation of anthropogenic NOX and SOX since late 90's rather caused excess atmospheric ammonium (NH3) in agricultural regions (Warner et al., 2017, Geophys. Res. Lett.). The Arctic is one of the most sensitive areas for future warming. Aerosols in the Arctic are transported from the Northern Hemisphere and mostly experience wet deposition (Breider et al., 2014, Jour. of Geophys. Res.: Atmos.). Ice cores preserve past water-soluble aerosols. From these viewpoints, ice cores from the Arctic is suitable to evaluate recent variation in aerosol composition due to human activity in the Northern Hemisphere and aerosol transportation. We analyzed ion concentrations in the ice core samples from a southeastern dome in Greenland (SE-Dome). The concentrations increased for NH4+ and decreased for SO42- after late 90's. The NH4+ increasing trend is due to excess NH3 emission in North America. Cloud nuclei formation depends on chemical form of aerosols. Thus, differences in chemical forms of these ammonium aerosols in SE-Dome samples are important to evaluate the effect on climate change in Greenland. In this study, we identified the chemical form of aerosols (water-soluble inclusions) in the SE-Dome ice core by using micro-Raman spectroscopy. SE-Dome ice core samples were collected in 2015 and enabled us to reconstruct seasonal variation owing to extremely higher accumulation rate ( 1m/yr.). The ice samples were sublimated and accumulated inclusions on the Ni sheets in a clean booth under -22 degrees Celsius. We identified CaSO4, Na2SO4, (NH4)2SO4, NaNO3, NH4NO3 by Raman spectra. This is the first report to identify ammonium salts ((NH4)2SO4 and NH4NO3) from ice core sample. In the summer samples, the relative abundances of CaSO4 and NaNO3 are lower but (NH4)2SO4 are higher than those in the spring samples. NH4+ rapidly react with SO24- under higher temperature. Higher concentration of NH3 in the warmest season possibly enhanced the formation of (NH4)2SO4 in North America and/or transportation of (NH4)2SO4 to the Arctic. Interestingly, (NH4)2SO4 are not detected from the spring samples deposited after late 90's while NH4NO3 are observed. Reduction of SOX emission since late 90's presumably reduced (NH4)2SO4 formation in North America agricultural regions and its transportation to the Arctic such as Greenland.

The Final Phase of Drilling of the Hawaii Scientific Drilling Project

NASA Astrophysics Data System (ADS)

Stolper, E.; Depaolo, D.; Thomas, D.; Garcia, M.; Haskins, E.; Baker, M.

2008-12-01

The principal goal of the Hawaii Scientific Drilling Project (HSDP) was to core continuously deep into the flank of a Hawaiian volcano and to investigate the petrology, geochemisty, geochronology, magnetics, etc. of the recovered samples. Drilling in Hilo, on the island of Hawaii proceeded in three phases. A 1.06 km pilot hole was core-drilled in 1993; a second hole was core-drilled to 3,098 meters below sea level (mbsl) in 1999, then deepened in 2004-2007 to 3,509 mbsl. Although the final phase of drilling was at times technically challenging, core recovery was close to 100%. All rocks from the final phase of drilling were emplaced below sea level and are from the Mauna Kea volcano. On-site core logging identified 45 separate units (the 1999 phase of drilling yielded 345 units). Five lithologies were identified: pillows (~60%); pillow breccias (~10%); massive lavas (~12%); hyaloclastites (~17%); intrusives (~1%; these are mostly multiple thin (down to cm scale) fingers of magma with identical lithologies occurring over narrow depth intervals). The rocks are primarily tholeiitic, ranging from aphyric to highly olivine-phyric lavas (up to ~25% olivine phenocrysts), with considerable fresh glass and olivine; clays and zeolites are present throughout the core. Forty whole-rock samples were collected as a reference suite and sent to multiple investigators for study. Additionally, glass was collected at roughly 3 m intervals for electron microprobe analysis. Although continuous and consistent with the shallower rocks from the previous phase of coring, there are several noteworthy features of the deepest core: (1) Glasses from shallower portions of the core exhibited bimodal silica contents, a low SiO2 group (~48-50 wt.%) and a high SiO2 group (~50.5- 52 wt.%). Glasses from the last phase of drilling are essentially all in the high-silica group and are somewhat more evolved than the high-silica glasses from the shallower portion of the core (5.1-7.6 vs. 5.1-10.4 wt.% MgO). (2) The expected sequence of lithologies with depth in the core is subaerial lava flows, hyaloclastites (formed by debris flows carrying glass and lithic fragments from the shoreline down the submarine flanks of the volcano), and finally pillow lavas. This sequence was generally observed in the earlier phases of drilling, and it appeared that the deepest rocks from the 1999 phase of drilling were essentially all formed from pillow lavas (i.e., there were no more hyaloclastites). However, thick hyaloclastites reflecting long distance transport from the ancient shoreline reappear in the bottom ~100 m of the drill hole. Although it may be coincidence, pillow breccias occur in the shallower parts of the core from the final phase of drilling, but not in the deeper parts in which the hyaloclastites reappear. (3) Intrusive rocks make up a lower fraction (~1%) of samples from the final phase of coring than in the deeper parts of the section from the 1999 phase of drilling (3.8%). It had been suggested that intrusives might become more common the deeper the drilling, but this is not the case at depths down to 3.5 km. (4) There are three units classified as "massive" including one relatively thick (~40 m), featureless (no internal boundaries, no evidence of mixing or internal differentiation), moderately olivine-phyric basalt.

Examining offshore sediment-hosted contaminant transport from Hurricane Katrina: Chapter 7A in Science and the storms-the USGS response to the hurricanes of 2005

USGS Publications Warehouse

Swarzenski, Peter W.; Campbell, Pamela L.; Poore, Richard Z.; Osterman, Lisa E.; Rosenbauer, Robert J.

2007-01-01

A rapid-response expedition was organized after the passage of Hurricane Katrina to investigate potential offshore environmental impacts and storm-induced sediment-transport processes. Both water-column and sediment samples were collected on the Louisiana shelf for a full complement of organic, inorganic, and geochronological tracers. Based on excess lead-210 (210Pb) inventories in cores collected before and after Katrina, the surface sediments and their associated geochemical signatures were considerably affected by the passage of this storm.

Coal Quality and Major, Minor, and Trace Elements in the Powder River, Green River, and Williston Basins, Wyoming and North Dakota

USGS Publications Warehouse

Stricker, Gary D.; Flores, Romeo M.; Trippi, Michael H.; Ellis, Margaret S.; Olson, Carol M.; Sullivan, Jonah E.; Takahashi, Kenneth I.

2007-01-01

The U.S. Geological Survey (USGS), in cooperation with the Wyoming Reservoir Management Group (RMG) of the Bureau of Land Management (BLM) and nineteen independent coalbed methane (CBM) gas operators in the Powder River and Green River Basins in Wyoming and the Williston Basin in North Dakota, collected 963 coal samples from 37 core holes (fig. 1; table 1) between 1999 and 2005. The drilling and coring program was in response to the rapid development of CBM, particularly in the Powder River Basin (PRB), and the needs of the RMG BLM for new and more reliable data for CBM resource estimates and reservoir characterization. The USGS and BLM entered into agreements with the gas operators to drill and core Fort Union coal beds, thus supplying core samples for the USGS to analyze and provide the RMG with rapid, real-time results of total gas desorbed, coal quality, and high pressure methane adsorption isotherm data (Stricker and others, 2006). The USGS determined the ultimate composition of all coal core samples; for selected samples analyses also included proximate analysis, calorific value, equilibrium moisture, apparent specific gravity, and forms of sulfur. Analytical procedures followed those of the American Society of Testing Materials (ASTM; 1998). In addition, samples from three wells (129 samples) were analyzed for major, minor, and trace element contents. Ultimate and proximate compositions, calorific value, and forms of sulfur are fundamental parameters in evaluating the economic value of a coal. Determining trace element concentrations, along with total sulfur and ash yield, is also essential to assess the environmental effects of coal use, as is the suitability of the coal for cleaning, gasification, liquefaction, and other treatments. Determination of coal quality in the deeper part (depths greater than 1,000 to 1,200 ft) of the PRB (Rohrbacher and others, 2006; Luppens and others, 2006) is especially important, because these coals are targeted for future mining and development. This report contains summary tables, histograms, and isopleth maps of coal analyses. Details of the compositional internal variability of the coal beds are based on the continuous vertical sampling of coal sequences, including beds in the deeper part of the PRB. Such sampling allows for close comparisons of the compositions of different parts of coal beds as well as within the same coal beds at different core hole locations within short distances of each other.

Transport of perfluoroalkyl substances (PFAS) from an arctic glacier to downstream locations: implications for sources.

PubMed

Kwok, Karen Y; Yamazaki, Eriko; Yamashita, Nobuyoshi; Taniyasu, Sachi; Murphy, Margaret B; Horii, Yuichi; Petrick, Gert; Kallerborn, Roland; Kannan, Kurunthachalam; Murano, Kentaro; Lam, Paul K S

2013-03-01

Perfluoroalkyl substances (PFAS) have been globally detected in various environmental matrices, yet their fate and transport to the Arctic is still unclear, especially for the European Arctic. In this study, concentrations of 17 PFAS were quantified in two ice cores (n=26), surface snow (n=9) and surface water samples (n=14) collected along a spatial gradient in Svalbard, Norway. Concentrations of selected ions (Na(+), SO4(2-), etc.) were also determined for tracing the origins and sources of PFAS. Perfluorobutanoate (PFBA), perfluorooctanoate (PFOA) and perfluorononanoate (PFNA) were the dominant compounds found in ice core samples. Taking PFOA, PFNA and perfluorooctane-sulfonate (PFOS) as examples, higher concentrations were detected in the middle layers of the ice cores representing the period of 1997-2000. Lower concentrations of C8-C12 perfluorocarboxylates (PFCAs) were detected in comparison with concentrations measured previously in an ice core from the Canadian Arctic, indicating that contamination levels in the European Arctic are lower. Average PFAS concentrations were found to be lower in surface snow and melted glacier water samples, while increased concentrations were observed in river water downstream near the coastal area. Perfluorohexanesulfonate (PFHxS) was detected in the downstream locations, but not in the glacier, suggesting existence of local sources of this compound. Long-range atmospheric transport of PFAS was the major deposition pathway for the glaciers, while local sources (e.g., skiing activities) were identified in the downstream locations. Copyright © 2012 Elsevier B.V. All rights reserved.

Comparing historic and modern forests on the Bitterroot Front

Treesearch

Michael G. Hartwell; Paul Alaback; Stephen F. Arno

2000-01-01

A study was initiated in 1995 to measure landscape changes in forest structures between 1900 and 1995. A systematic sampling system was used to collect data on three forested faces on the Bitterroot Front. Over 1,200 tree cores were taken on 216 plots between the elevation range of 4,500 to 7,500 feet. Historic forests were reconstructed through quantitative techniques...

Genetic diversity assessment of sesame core collection in China by phenotype and molecular markers and extraction of a mini-core collection

PubMed Central

2012-01-01

Background Sesame (Sesamum indicum L.) is one of the four major oil crops in China. A sesame core collection (CC) was established in China in 2000, but no complete study on its genetic diversity has been carried out at either the phenotypic or molecular level. To provide technical guidance, a theoretical basis for further collection, effective protection, reasonable application, and a complete analysis of sesame genetic resources, a genetic diversity assessment of the sesame CC in China was conducted using phenotypic and molecular data and by extracting a sesame mini-core collection (MC). Results Results from a genetic diversity assessment of sesame CC in China were significantly inconsistent at the phenotypic and molecular levels. A Mantel test revealed the insignificant correlation between phenotype and molecular marker information (r = 0.0043, t = 0.1320, P = 0.5525). The Shannon-Weaver diversity index (I) and Nei genetic diversity index (h) were higher (I = 0.9537, h = 0.5490) when calculated using phenotypic data from the CC than when using molecular data (I = 0.3467, h = 0.2218). A mini-core collection (MC) containing 184 accessions was extracted based on both phenotypic and molecular data, with a low mean difference percentage (MD, 1.64%), low variance difference percentage (VD, 22.58%), large variable rate of coefficient of variance (VR, 114.86%), and large coincidence rate of range (CR, 95.76%). For molecular data, the diversity indices and the polymorphism information content (PIC) for the MC were significantly higher than for the CC. Compared to an alternative random sampling strategy, the advantages of capturing genetic diversity and validation by extracting a MC using an advanced maximization strategy were proven. Conclusions This study provides a comprehensive characterization of the phenotypic and molecular genetic diversities of the sesame CC in China. A MC was extracted using both phenotypic and molecular data. Low MD% and VD%, and large VR% and CR% suggested that the MC provides a good representation of the genetic diversity of the original CC. The MC was more genetically diverse with higher diversity indices and a higher PIC value than the CC. A MC may aid in reasonably and efficiently selecting materials for sesame breeding and for genotypic biological studies, and may also be used as a population for association mapping in sesame. PMID:23153260

Genetic diversity assessment of sesame core collection in China by phenotype and molecular markers and extraction of a mini-core collection.

PubMed

Zhang, Yanxin; Zhang, Xiurong; Che, Zhuo; Wang, Linhai; Wei, Wenliang; Li, Donghua

2012-11-15

Sesame (Sesamum indicum L.) is one of the four major oil crops in China. A sesame core collection (CC) was established in China in 2000, but no complete study on its genetic diversity has been carried out at either the phenotypic or molecular level. To provide technical guidance, a theoretical basis for further collection, effective protection, reasonable application, and a complete analysis of sesame genetic resources, a genetic diversity assessment of the sesame CC in China was conducted using phenotypic and molecular data and by extracting a sesame mini-core collection (MC). Results from a genetic diversity assessment of sesame CC in China were significantly inconsistent at the phenotypic and molecular levels. A Mantel test revealed the insignificant correlation between phenotype and molecular marker information (r = 0.0043, t = 0.1320, P = 0.5525). The Shannon-Weaver diversity index (I) and Nei genetic diversity index (h) were higher (I = 0.9537, h = 0.5490) when calculated using phenotypic data from the CC than when using molecular data (I = 0.3467, h = 0.2218). A mini-core collection (MC) containing 184 accessions was extracted based on both phenotypic and molecular data, with a low mean difference percentage (MD, 1.64%), low variance difference percentage (VD, 22.58%), large variable rate of coefficient of variance (VR, 114.86%), and large coincidence rate of range (CR, 95.76%). For molecular data, the diversity indices and the polymorphism information content (PIC) for the MC were significantly higher than for the CC. Compared to an alternative random sampling strategy, the advantages of capturing genetic diversity and validation by extracting a MC using an advanced maximization strategy were proven. This study provides a comprehensive characterization of the phenotypic and molecular genetic diversities of the sesame CC in China. A MC was extracted using both phenotypic and molecular data. Low MD% and VD%, and large VR% and CR% suggested that the MC provides a good representation of the genetic diversity of the original CC. The MC was more genetically diverse with higher diversity indices and a higher PIC value than the CC. A MC may aid in reasonably and efficiently selecting materials for sesame breeding and for genotypic biological studies, and may also be used as a population for association mapping in sesame.

Recent Increases in Snow Accumulation and Decreases in Sea-Ice Concentration Recorded in a Coastal NW Greenland Ice Core

NASA Astrophysics Data System (ADS)

Osterberg, E. C.; Thompson, J. T.; Wong, G. J.; Hawley, R. L.; Kelly, M. A.; Lutz, E.; Howley, J.; Ferris, D. G.

2013-12-01

A significant rise in summer temperatures over the past several decades has led to widespread retreat of the Greenland Ice Sheet (GIS) margin and surrounding sea ice. Recent observations from geodetic stations and GRACE show that ice mass loss progressed from South Greenland up to Northwest Greenland by 2005 (Khan et al., 2010). Observations from meteorological stations at the U.S. Thule Air Force Base, remote sensing platforms, and climate reanalyses indicate a 3.5C mean annual warming in the Thule region and a 44% decrease in summer (JJAS) sea-ice concentrations in Baffin Bay from 1980-2010. Mean annual precipitation near Thule increased by 12% over this interval, with the majority of the increase occurring in fall (SON). To improve projections of future ice loss and sea-level rise in a warming climate, we are currently developing multi-proxy records (lake sediment cores, ice cores, glacial geologic data, glaciological models) of Holocene climate variability and cryospheric response in NW Greenland, with a focus on past warm periods. As part of our efforts to develop a millennial-length ice core paleoclimate record from the Thule region, we collected and analyzed snow pit samples and short firn cores (up to 20 m) from the coastal region of the GIS (2Barrel site; 76.9317 N, 63.1467 W) and the summit of North Ice Cap (76.938 N, 67.671 W) in 2011 and 2012, respectively. The 2Barrel ice core was sampled using a continuous ice core melting system at Dartmouth, and subsequently analyzed for major anion and trace element concentrations and stable water isotope ratios. Here we show that the 2Barrel ice core spanning 1990-2010 records a 25% increase in mean annual snow accumulation, and is positively correlated (r = 0.52, p<0.01) with ERA-Interim precipitation. The 2Barrel annual sea-salt Na concentration is strongly correlated (r = 0.5-0.8, p<0.05) with summer and fall sea-ice concentrations in northern Baffin Bay near Thule (Figure 1). We hypothesize that the positive correlation represents a significant Na contribution from frost flowers growing on fall frazil ice. Ongoing analyses will evaluate the relationship between MSA concentrations and sea ice extent. Our results show that a deep ice core collected from this dynamic and climate-sensitive region of NW Greenland would produce a valuable record of late Holocene climate and sea ice extent.

Historical contributions of phosphorus from natural and agricultural sources and implications for stream water quality, Cheney Reservoir watershed, south-central Kansas

USGS Publications Warehouse

Pope, Larry M.; Milligan, Chad R.; Mau, David Phillip

2002-01-01

An examination of soil cores collected from 43 nonagricultural coring sites in the Cheney Reservoir watershed of south-central Kansas was conducted by the U.S. Geological Survey in September 1999. The cores were collected as part of an ongoing cooperative study with the city of Wichita, Kansas. The 43 sites (mostly cemeteries) were thought to have total phosphorus concentrations in the soil that are representative of natural conditions (unaffected by human activity). The purpose of this report is to present the analysis and evaluation of these soil cores, to quantify the phosphorus contributions to Cheney Reservoir from natural and agricultural sources, and to provide estimates of stream-water-quality response to natural concentrations of total phosphorus in the soil. Analysis of soil cores from the 43 sites produced natural concentrations of total phosphorus that ranged from 74 to 539 milligrams per kilogram with a median concentration of 245 milligrams per kilogram in 2-inch soil cores and from 50 to 409 milligrams per kilogram with a median concentration of 166 milligrams per kilogram in 8-inch soil cores. Natural concentrations of total phosphorus in soil were statistically larger in samples from coring sites in the eastern half of the watershed than in samples from coring sites in the western half of the watershed. This result partly explains a previously determined west-to-east increase in total phosphorus yields in streams of the Cheney Reservoir watershed. A comparison of total phosphorus concentrations in soil under natural conditions to the historical mean total phosphorus concentration in agriculturally enriched bottom sediment in Cheney Reservoir indicated that agricultural activities within the watershed have increased total phosphorus concentrations in watershed soil that is transported in streams to about 2.9 times natural concentrations. Retention efficiencies for phosphorus and sediment historically transported to Cheney Reservoir were calculated at 92 and 99 percent, respectively. Most of the phosphorus was retained in bottom sediment. Sediment accumulation in Cheney Reservoir was less than reservoir design-life specifications on the basis of the age of the reservoir. Estimates of mean total phosphorus concentrations for selected streams in the Cheney Reservoir watershed under natural concentrations of total phosphorus in soil and a historic set of watershed conditions indicate that water from two of the five streamflow sampling sites would not meet the total phosphorus water-quality goal of 0.10 milligram per liter established by the Cheney Reservoir Watershed Task Force Committee. These results imply that the water-quality goal for total phosphorus in some streams of the watershed may not be met simply by reducing the amount of phosphorus applied. Instead, meeting the goal could involve a combination of approaches-for example, reducing the agricultural distribution of phosphorus and implementing changes in watershed activities to mitigate phosphorus movement to surface water.

Method and apparatus for enhanced evanescent fluorescence and color filtering using a high refractive index thin film coating

DOEpatents

Kao, Hung Pin; Schoeniger, Joseph; Yang, Nancy

2001-01-01

A technique for increasing the excitation and collection of evanescent fluorescence radiation emanating from a fiber optic sensor having a high refractive index (n.sub.r), dielectric thin film coating has been disclosed and described. The invention comprises a clad optical fiber core whose cladding is removed on a distal end, the distal end coated with a thin, non-porous, titanium dioxide sol-gel coating. It has been shown that such a fiber will exhibit increased fluorescence coupling due in part by 1) increasing the intensity of the evanescent field at the fiber core surface by a constructive interference effect on the propagating light, and 2) increasing the depth of penetration of the field in the sample. The interference effect created by the thin film imposes a wavelength dependence on the collection of the fluorescence and also suggests a novel application of thin films for color filtering as well as increasing collected fluorescence in fiber sensors. Collected fluorescence radiation increased by up to 6-fold over that of a bare fused silica fiber having a numerical aperture (N.A.) of O.6.

Rare earth elements in core marine sediments of coastal East Malaysia by instrumental neutron activation analysis.

PubMed

Ashraf, Ahmadreza; Saion, Elias; Gharibshahi, Elham; Mohamed Kamari, Halimah; Chee Kong, Yap; Suhaimi Hamzah, Mohd; Suhaimi Elias, Md

2016-01-01

A study was carried out on the concentration of REEs (Dy, Sm, Eu,Yb, Lu, La and Ce) that are present in the core marine sediments of East Malaysia from three locations at South China Sea and one location each at Sulu Sea and Sulawesi Sea. The sediment samples were collected at a depth of between 49 and 109 m, dried, and crushed to powdery form. The entire core sediments prepared for Instrumental Neutron Activation Analysis (INAA) were weighted approximately 0.0500 g to 0.1000 g for short irradiation and 0.1500 g to 0.2000 g for long irradiation. The samples were irradiated with a thermal neutron flux of 4.0×10(12) cm(-2) s(-1) in a TRIGA Mark II research reactor operated at 750 kW. Blank samples and standard reference materials SL-1 were also irradiated for calibration and quality control purposes. It was found that the concentration of REEs varies in the range from 0.11 to 36.84 mg/kg. The chondrite-normalized REEs for different stations suggest that all the REEs are from similar origins. There was no significant REEs contamination as the enrichment factors normalized for Fe fall in the range of 0.42-2.82. Copyright © 2015 Elsevier Ltd. All rights reserved.

Sampling methods in archaeomagnetic dating: A comparison using case studies from Wörterberg, Eisenerz and Gams Valley (Austria)

NASA Astrophysics Data System (ADS)

Trapanese, A.; Batt, C. M.; Schnepp, E.

The aim of this research was to review the relative merits of different methods of taking samples for archaeomagnetic dating. To allow different methods to be investigated, two archaeological structures and one modern fireplace were sampled in Austria. On each structure a variety of sampling methods were used: the tube and disc techniques of Clark et al. (Clark, A.J., Tarling, D.H., Noel, M., 1988. Developments in archaeomagnetic dating in Great Britain. Journal of Archaeological Science 15, 645-667), the drill core technique, the mould plastered hand block method of Thellier, and a modification of it. All samples were oriented with a magnetic compass and sun compass, where weather conditions allowed. Approximately 12 discs, tubes, drill cores or plaster hand blocks were collected from each structure, with one mould plaster hand block being collected and cut into specimens. The natural remanent magnetisation (NRM) of the samples was measured and stepwise alternating field (AF) or thermal demagnetisation was applied. Samples were measured either in the UK or in Austria, which allowed the comparison of results between magnetometers with different sensitivity. The tubes and plastered hand block specimens showed good agreement in directional results, and the samples obtained showed good stability. The discs proved to be unreliable as both NRM and the characteristic remanent magnetisation (ChRM) distribution were very scattered. The failure of some methods may be related to the suitability of the material sampled, for example if it was disturbed before sampling, had been insufficiently heated or did not contain appropriate magnetic minerals to retain a remanent magnetisation. Caution is also recommended for laboratory procedures as the cutting of poorly consolidated specimens may disturb the material and therefore the remanent magnetisation. Criteria and guidelines were established to aid researchers in selecting the most appropriate method for a particular archaeological structure.

Five million years of compositionally diverse, episodic volcanism: Construction of Davidson Seamount atop an abandoned spreading center

NASA Astrophysics Data System (ADS)

Clague, D. A.; Paduan, J. B.; Duncan, R. A.; Huard, J. J.; Davis, A. S.; Castillo, P. R.; Lonsdale, P.; Devogelaere, A.

2009-12-01

Davidson Seamount, a volcano located about 80 km off the central California coast, has a volume of ˜320 km3 and consists of a series of parallel ridges serrated with steep cones. Davidson was sampled and its morphology observed during 27 ROV Tiburon dives. During those dives, 286 samples of lava, volcaniclastite, and erratics from the continental margin were collected, with additional samples from one ROV-collected push core and four gravity cores. We report glass compositions for 99 samples and 40Ar-39Ar incremental heating age data for 20 of the samples. The glass analyses are of hawaiite (62%), mugearite (13%), alkalic basalt (9%), and tephrite (8%), with minor transitional basalt (2%), benmoreite (2%), and trachyandesite (2%). The lithologies are irregularly distributed in space and time. The volcano erupted onto crust inferred to be 20 Ma from seafloor magnetic anomalies. Ages of the lavas range from 9.8 to 14.8 Ma. The oldest rocks are from the central ridge, and the youngest are from the flanks and southern end of the edifice. The compositions of the 18 reliably dated volcanic cones vary with age such that the oldest lavas are the most fractionated. The melts lost 65% to nearly 95% of their initial S because of bubble loss during vesiculation, and the shallowest samples have S contents similar to lava erupted subaerially in Hawaii. Despite this similarity in S contents, there is scant other evidence to suggest that Davidson was ever an island. The numerous small cones of disparate chemistry and the long eruptive period suggest episodic growth of the volcano over at least 5 Myr and perhaps as long as 10 Myr if it began to grow when the spreading ridge was abandoned.

Metabolic Activity and Biosignatures of Microbes in the Lower Ocean Crust of Atlantis Bank, IODP Expedition 360

NASA Astrophysics Data System (ADS)

Wee, S. Y.; Edgcomb, V. P.; Burgaud, G.; Klein, F.; Schubotz, F.; Yvon-Lewis, S. A.; Sylvan, J. B.

2017-12-01

International Ocean Discovery Program (IODP) Expedition 360 represents the first leg of a multi-phase drilling program, SloMo, aimed at investigating the nature of the lower crust and Moho at slow spreading ridges. The goal of Expedition 360 was to recover a representative transect of the lower oceanic crust formed at Atlantis Bank, an oceanic core complex on the SW Indian Ridge. Recovered cores were primarily gabbro and olivine gabbro, which may potentially host serpentinization reactions and associated microbial life. Our goal was to sample this subseafloor environment and determine quantity, diversity and metabolic capabilities of any resident microbial life. Hole U1473A was drilled during Expedition 360 down to 790 m below seafloor and samples for detection of microbial communities and microbial biosignatures were collected throughout. We present here quantification of microbial biomass via fluorescence microscopy, preliminary analysis of nutrient addition experiments, data from sequencing of microbial 16S rRNA genes, analysis of microbial lipids, and data from Raman spectra of subsurface isolates. We initiated and sampled 12 nutrient addition experiments from 71-745 mbsf by adding sampled rocks to artificial seawater with no additions, added ammonium, added ammonium plus phosphate, and added organic acids. In nearly all of the experiment bottles, methane was detected when samples were collected at six months and again after one year of incubation. Phosphate in the incubations was drawn down, indicating active microbial metabolism, and archaeal lipids from in situ samples indicate the presence of methanogens, corroborating the likelihood of methanogens as the source of detected methane in the nutrient addition incubations. Altogether, the interdisciplinary approach used here provides a peek into life in the subseafloor upper ocean crust.

Differentiation between pine woods according to species and growing location using FTIR-ATR.

PubMed

Traoré, Mohamed; Kaal, Joeri; Martínez Cortizas, Antonio

2018-01-01

Attenuated total reflectance-Fourier transform infrared (FTIR-ATR) spectroscopy was applied to 120 samples of heartwood rings from eight individual pine trees from different locations in Spain. Pinus sylvestris cores were collected at the Artikutza natural park (Ps-ART). Pinus nigra cores were collected in Sierra de Cazorla (Pn-LIN) and in La Sagra Mountain (Pn-LSA). Three discriminant analysis tests were performed using all bands (DF T ), lignin bands only (DF L ) and polysaccharides bands only (DF P ), to explore the ability of FTIR-ATR to separate between species and growing location. The DF L model enabled a good separation between pine species, whereas the DF P model enabled differentiation for both species and growing location. The DF T model enabled virtually perfect separation, based on two functions involving twelve FTIR bands. Discrimination between species was related to bands at 860 and 1655 cm -1 , which were more intense in P. sylvestris samples, and bands at 1425 and 1635 cm -1 , more intense in P. nigra samples. These vibrations were related to differences in lignin structure and polysaccharide linear chains. Discrimination between growing locations was mainly related to polysaccharide absorptions: at 900, 1085 and 1335 cm -1 more representative of Pn-LIN samples, and at 1105 and 1315 cm -1 mostly associated to Pn-LSA samples. These absorptions are related to β-glycosidic linkages (900 cm -1 ), cellulose and hemicellulose (C-O bonds, 1085 and 1105 cm -1 ) and content in amorphous/crystalline cellulose (1315 and 1335 cm -1 ). These results show that FTIR-ATR in combination with multivariate statistics can be a useful tool for species identification and provenancing for pine wood samples of unknown origin.

Procedures for Obtaining and Analyzing Writing Samples of School-Age Children and Adolescents.

PubMed

Price, Johanna R; Jackson, Sandra C

2015-10-01

Many students' writing skills are below grade-level expectations, and students with oral language difficulties are at particular risk for writing difficulties. Speech-language pathologists' (SLPs') expertise in language applies to both the oral and written modalities, yet evidence suggests that SLPs' confidence regarding writing assessment is low. Writing samples are a clinically useful, criterion-referenced assessment technique that is relevant to helping students satisfy writing-related requirements of the Common Core State Standards (National Governors Association Center for Best Practices and Council of Chief State School Officers, 2010a). This article provides recommendations for obtaining and analyzing students' writing samples. In this tutorial, the authors provide a comprehensive literature review of methods regarding (a) collection of writing samples from narrative, expository (informational/explanatory), and persuasive (argument) genres; (b) variables of writing performance that are useful to assess; and (c) manual and computer-aided techniques for analyzing writing samples. The authors relate their findings to expectations for writing skills expressed in the Common Core State Standards (National Governors Association Center for Best Practices & Council of Chief State School Officers, 2010a). SLPs can readily implement many techniques for obtaining and analyzing writing samples. The information in this article provides SLPs with recommendations for the use of writing samples and may help increase SLPs' confidence regarding written language assessment.

Paleoseismic events inferred from marine seismogenic turbidites of the eastern Nankai Trough

NASA Astrophysics Data System (ADS)

Okutsu, N.; Ashi, J.; Omura, A.; Yamaguchi, A.; Suganuma, Y.; Kanamatsu, T.; Murayama, M.

2016-12-01

Paleoseismology using marine seismogenic turbidites is a developing field especially in subduction margins. However, very fine-grained turbidites are difficult to distinguish from hemipelagic mud. The primary focus of this study is to understand the characteristics of the muddy turbidites. The second focus is to discuss the muddy turbidites distributions and their ages from a longer sediment core, and understand the paleoseismic records of eastern Nankai Trough, Japan. The samples used in this study include multiple cores and a piston core which were collected from the sedimentary basin southwest off Kii Peninsula during the R/V Shinsei Maru KS-14-8 cruise. The sampling site is located at the ENE-WSW elongated basin between the accretionary prism and the forearc basin off Kumano without terrestrial sediment supply. The basin exhibits a terminal basin that captures all sediments supplied from outside. From the multiple core samples, the Cs-137 and Pb- 210 concentration distribution indicates that the muddy sediment layer in the upper 17 cm was formed from the 2004 off the Kii Peninsula earthquake. Visual observation and X-ray CT scans were conducted alongside other measurements for anisotropy of magnetic susceptibility (AMS), paleomagnetism, rock magnetism, electrical resistivity, and X-ray fluorescence core scanning (XRF). Muddy seismogenic turbidites associated with the 2004 off the Kii Peninsula earthquake have thick homogeneous clay layer above the silty lamination. The magnetic susceptibility decreases upwards in the lamination. This specific feature is thought to have formed as the muddy turbiditity current slowly decelerated and slowly settled down the slope. From the results of XRF core scanning, Ca and Fe have a peak at basement of turbidites, and decrease upwards. Ca is thought to correspond to amount of the foraminiferas. In piston core, we observed the same sedimentary and magnetic characteristics as the multiple cores. Based on stratigraphic information from volcanic ash and radiocarbon age of the foraminifera, intercalation pattern of muddy turbidite layers almost consistent with the known past earthquake recurrence times in the Nankai subduction margin. Reversed age recognized beneath the thick turbidite layer suggests reworking of landslide deposits probably due to the strong shaking.

Conceptual hydrogeologic framework of the shallow aquifer system at Virginia Beach, Virginia

USGS Publications Warehouse

Smith, Barry S.; Harlow, George E.

2002-01-01

The hydrogeologic framework of the shallow aquifer system at Virginia Beach was revised to provide a better understanding of the distribution of fresh ground water, its potential use, and its susceptibility to contamination. The revised conceptual framework is based primarily on analyses of continuous cores and downhole geophysical logs collected at 7 sites to depths of approximately 200 ft.The shallow aquifer system at Virginia Beach is composed of the Columbia aquifer, the Yorktown confining unit, and the Yorktown-East-over aquifer. The shallow aquifer system is separated from deeper units by the continuous St. Marys confining unit.The Columbia aquifer is defined as the predominantly sandy surficial deposits above the Yorktown confining unit. The Yorktown confining unit is composed of a series of very fine sandy to silty clay units of various colors at or near the top of the Yorktown Formation. The Yorktown confining unit varies in thickness and in composition, but on a regional scale is a leaky confining unit. The Yorktown-Eastover aquifer is defined as the predominantly sandy deposits of the Yorktown Formation and the upper part of the Eastover Formation above the confining clays of the St. Marys Formation. The limited areal extent of highly permeable deposits containing freshwater in the Yorktown-Eastover aquifer precludes the installation of highly productive freshwater wells over most of the city. Some deposits of biofragmental sand or shell hashes in the Yorktown-Eastover aquifer can support high-capacity wells.A water sample was collected from each of 10 wells installed at 5 of the 7 core sites to determine the basic chemistry of the aquifer system. One shallow well and one deep well was installed at each site. Concentrations of chloride were higher in the water from the deeper well at each site. Concentrations of dissolved iron in all of the water samples were higher than the U.S. Environmental Protection Agency Secondary Drinking Water Regulations. Concentrations of manganese and chloride were higher than the Secondary Drinking Water Regulations in samples from some wells.In the humid climate of Virginia Beach, the periodic recharge of freshwater through the sand units of the shallow aquifer system occurs often enough to create a dynamic equilibrium whereby freshwater flows continually down and away from the center of the ridges to mix with and sweep brackish water and saltwater back toward the tidal rivers, bays, salt marshes, and the Atlantic Ocean.The aquifers and confining units of the shallow aquifer system at Virginia Beach are heterogeneous, discontinuous, and without exact marker beds, which makes correlations in the study area difficult. Investigations using well cuttings, spot cores, or split-spoon samples with geophysical logs are not as definitive as continuous cores for determining or correlating hydrogeologic units. Future investigations of the shallow aquifer system would benefit by collecting continuous cores.

Utilization of Molecular, Phenotypic, and Geographical Diversity to Develop Compact Composite Core Collection in the Oilseed Crop, Safflower (Carthamus tinctorius L.) through Maximization Strategy

PubMed Central

Kumar, Shivendra; Ambreen, Heena; Variath, Murali T.; Rao, Atmakuri R.; Agarwal, Manu; Kumar, Amar; Goel, Shailendra; Jagannath, Arun

2016-01-01

Safflower (Carthamus tinctorius L.) is a dryland oilseed crop yielding high quality edible oil. Previous studies have described significant phenotypic variability in the crop and used geographical distribution and phenotypic trait values to develop core collections. However, the molecular diversity component was lacking in the earlier collections thereby limiting their utility in breeding programs. The present study evaluated the phenotypic variability for 12 agronomically important traits during two growing seasons (2011–12 and 2012–13) in a global reference collection of 531 safflower accessions, assessed earlier by our group for genetic diversity and population structure using AFLP markers. Significant phenotypic variation was observed for all the agronomic traits in the representative collection. Cluster analysis of phenotypic data grouped the accessions into five major clusters. Accessions from the Indian Subcontinent and America harbored maximal phenotypic variability with unique characters for a few traits. MANOVA analysis indicated significant interaction between genotypes and environment for both the seasons. Initially, six independent core collections (CC1–CC6) were developed using molecular marker and phenotypic data for two seasons through POWERCORE and MSTRAT. These collections captured the entire range of trait variability but failed to include complete genetic diversity represented in 19 clusters reported earlier through Bayesian analysis of population structure (BAPS). Therefore, we merged the three POWERCORE core collections (CC1–CC3) to generate a composite core collection, CartC1 and three MSTRAT core collections (CC4–CC6) to generate another composite core collection, CartC2. The mean difference percentage, variance difference percentage, variable rate of coefficient of variance percentage, coincidence rate of range percentage, Shannon's diversity index, and Nei's gene diversity for CartC1 were 11.2, 43.7, 132.4, 93.4, 0.47, and 0.306, respectively while the corresponding values for CartC2 were 9.3, 58.8, 124.6, 95.8, 0.46, and 0.301. Each composite core collection represented the complete range of phenotypic and genetic variability of the crop including 19 BAPS clusters. This is the first report describing development of core collections in safflower using molecular marker data with phenotypic values and geographical distribution. These core collections will facilitate identification of genetic determinants of trait variability and effective utilization of the prevalent diversity in crop improvement programs. PMID:27807441

Polar organic compounds in pore waters of the Chesapeake Bay impact structure, Eyreville core hole: Character of the dissolved organic carbon and comparison with drilling fluids

USGS Publications Warehouse

Rostad, C.E.; Sanford, W.E.

2009-01-01

Pore waters from the Chesapeake Bay impact structure cores recovered at Eyreville Farm, Northampton County, Virginia, were analyzed to characterize the dissolved organic carbon. After squeezing or centrifuging, a small volume of pore water, 100 ??L, was taken for analysis by electrospray ionization-mass spectrometry. Porewater samples were analyzed directly without filtration or fractionation, in positive and negative mode, for polar organic compounds. Spectra in both modes were dominated by low-molecular-weight ions. Negative mode had clusters of ions differing by -60 daltons, possibly due to increasing concentrations of inorganic salts. The numberaverage molecular weight and weight-average molecular weight values for the pore waters from the Chesapeake Bay impact structure are higher than those reported for other aquatic sources of natural dissolved organic carbon as determined by electrospray ionization-mass spectrometry. In order to address the question of whether drilling mud fluids may have contaminated the pore waters during sample collection, spectra from the pore waters were compared to spectra from drilling mud fluids. Ions indicative of drilling mud fluids were not found in spectra from the pore waters, indicating there was no detectable contamination, and highlighting the usefulness of this analytical technique for detecting potential contamination during sample collection. ?? 2009 The Geological Society of America.

Subsurface sediment contamination during borehole drilling with an air-actuated down-hole hammer.

PubMed

Malard, Florian; Datry, Thibault; Gibert, Janine

2005-10-01

Drilling methods can severely alter physical, chemical, and biological properties of aquifers, thereby influencing the reliability of water samples collected from groundwater monitoring wells. Because of their fast drilling rate, air-actuated hammers are increasingly used for the installation of groundwater monitoring wells in unconsolidated sediments. However, oil entrained in the air stream to lubricate the hammer-actuating device can contaminate subsurface sediments. Concentrations of total hydrocarbons, heavy metals (Cu, Ni, Cr, Zn, Pb, and Cd), and nutrients (particulate organic carbon, nitrogen, and phosphorus) were measured in continuous sediment cores recovered during the completion of a 26-m deep borehole drilled with a down-hole hammer in glaciofluvial deposits. Total hydrocarbons, Cu, Ni, Cr and particulate organic carbon (POC) were all measured at concentrations far exceeding background levels in most sediment cores. Hydrocarbon concentration averaged 124 +/- 118 mg kg(-1) dry sediment (n = 78 samples) with peaks at depths of 8, 14, and 20 m below the soil surface (maximum concentration: 606 mg kg(-1)). The concentrations of hydrocarbons, Cu, Ni, Cr, and POC were positively correlated and exhibited a highly irregular vertical pattern, that probably reflected variations in air loss within glaciofluvial deposits during drilling. Because the penetration of contaminated air into the formation is unpreventable, the representativeness of groundwater samples collected may be questioned. It is concluded that air percussion drilling has strong limitations for well installation in groundwater quality monitoring surveys.

Quantitative degassing of gas hydrate-bearing pressure cores from Green Canyon 955, Gulf of Mexico

NASA Astrophysics Data System (ADS)

Phillips, S. C.; Holland, M. E.; Flemings, P. B.; Schultheiss, P. J.; Waite, W. F.; Petrou, E. G.; Jang, J.; Polito, P. J.; O'Connell, J.; Dong, T.; Meazell, K.

2017-12-01

We present results from 20 quantitative degassing experiments of pressure-core sections collected during Expedition UT-GOM2-1 from Green Canyon 955 in the northern Gulf of Mexico. These experiments highlight an average pore-space methane hydrate saturation, Sh, of 59% (min: 12%; max 87%) in sediments between 413 and 440 mbsf in 2032 m water depth. There is a strong lithofacies control of hydrate saturation within the reservoir, with a high saturation sandy silt facies (Sh of 65 to 87%) interbedded with a low saturation clayey silt facies (Sh of 12 to 30%). Bedding occurs on the scale of tens of centimeters. Outside of the main hydrate reservoir, methane hydrate occurs in low saturations (Sh of 0.8 to 3%). Hydrate saturations exhibit a strong correlation (R2=0.89) with the average P-wave velocity measured through the degassed sections. These preliminary hydrate saturations were calculated assuming a porosity of 40% with core filling the full internal diameter of the core liner. Gas recovered during these experiments is composed of almost entirely methane, with an average of 94 ppm ethane and detectable, but not quantifiable, propane. Degassed pressure cores were depressurized through a manifold by the stepwise release of fluid, and the volumes of produced gas and water were monitored. The core's hydrostatic pressure was measured and recorded continuously at the manifold. Pressure and temperature were also measured by data storage tags within the sample chambers. Two slow, multi-day degassing experiments were performed to estimate the in situ salinity within core sections. Based on temperature and pressure observations at the point of the initial pressure rebound due to hydrate dissociation, we estimate the salinity within these samples to be between 33 and 42 g kg-1.

Autigenic and Anthropogenic Uranium in the Marine Sediments of the Gulf of California in Front of Santa Rosalia Mining District

NASA Astrophysics Data System (ADS)

Choumiline, K.; Rodríguez-Figueroa, G.; Shumilin, E.; Sapozhnikov, D.

2007-05-01

To verify the possibilities of U enrichments in the marine sedimentary environment of the eastern sector of the central Gulf of Califoria (GC), eleven sediment cores were collected in front of the Santa Rosalia mining region, peninsula of Baja California. Uranium and some other trace element contents in sliced core layers, dried and homogenized, were determined using instrumental neutron activation analysis. Average total U contents in sediments of five cores collected in the open GC in front of Santa Rosalía at sites with water depths from 265 m to 1030 m and in the Guaymas Basin with 2019 m, ranged from 1.36±0.26 mg kg-1 (Guaymas Basin) to 9.31±3.03 mg kg-1 (SR63 core, depth 630 m). To distinguish non-lithogenic U from the lithogenic one, the normalization of total U contents to the concentrations of Sc in the samples was used. That because this element is a reliable indicator of crustal materials, mainly aluminosilicates in the marine sediments. The relative contribution of non-lithogenic (authigenic) U varied from 49.8±3 % (Guaymas Basin) to 84.2±8.2 % (SR62 core) of the total U content in the sediments of the open central GC. Surprisingly, in three sediment cores from the coastal zone adjacent to the town of Santa Rosalía in water depth range 3-6 m very high concentrations of total U were found, ranging from 54.2±7.3 mg kg-1 (SR4 core) to 110±13 mg kg-1 (SR2 core) and exceeding not only U average abundance in the earth´s crust (2.7 mg kg-1), but also its levels found for SR62 core, as well as those reported for natural enrichments of U in suboxic-anoxic environments, e.g. at Mexico and Peru margin sites (3.04 mg kg-1 - 24.54 mg kg-1, McManus et al., 2006). The relative contribution of non-lithogenic U in the sediments of these three anomalous cores varied from 97.2±0.4 % (SR4 core) to 98.80.2 % (SR1 and SR2 cores) of their total U content. The sediments were also depleted in organic C (0.05 % - 0.18 %), which is not typical for marine solid phases enriched in authigenic U. Additional surface sampling around the cores with high levels of U, helped to define the spatial distribution of this element, as well as Co, Cu, Zn, light lanthanides and europium, which also showed "anomalies". The association with anthropogenic impact is discussed because the geochemical fingerprints of these sediments are the same as for solid wastes of copper smelting, which has occurred in Santa Rosalía in the past century till 1984.

Core self-evaluations and job and life satisfaction: the role of self-concordance and goal attainment.

PubMed

Judge, Timothy A; Bono, Joyce E; Erez, Amir; Locke, Edwin A

2005-03-01

The present study tested a model explaining how the core self-evaluations (i.e., positive self-regard) concept is linked to job and life satisfaction. The self-concordance model, which focuses on motives underlying goal pursuit, was used as an explanatory framework. Data were collected from 2 samples: (a) 183 university students (longitudinal measures of goal attainment and life satisfaction were used) and (b) 251 employees (longitudinal measures of goal attainment and job satisfaction were utilized). In both studies, the core self-evaluations concept was positively related to goal self-concordance, meaning that individuals with positive self-regard were more likely to pursue goals for intrinsic and identified (value-congruent) reasons. Furthermore, in both studies, goal self-concordance was related to satisfaction (job satisfaction in Study 1 and life satisfaction in Study 2).

An assessment of butyltins and metals in sediment cores from the St. Thomas East End Reserves, USVI.

PubMed

Hartwell, S Ian; Apeti, Dennis A; Mason, Andrew L; Pait, Anthony S

2016-11-01

Tributyltin (TBT) concentrations near a marina complex in Benner Bay on St. Thomas, US Virgin Islands, were elevated relative to other areas in a larger study of the southeastern shore of the island. At the request of the USVI Coastal Zone Management Program, sediment cores and surface sediment samples were collected to better define the extent and history of TBT deposition in the vicinity of Benner Bay. The sediment cores were sectioned into 2-cm intervals and dated with 210 Pb and 137 Cs. The core sections and the surface samples were analyzed for butyltins and 16 elements. Deposition rates varied from 0.07-5.0 mm/year, and were highest in the marina complex. Core ages ranged from 54 to 200 years. The bottoms of the cores contained shell hash, but the top layers all consisted of much finer material. Surface concentrations of TBT exceeded 2000 ng Sn/g (dry weight) at two locations. At a depth of 8 cm TBT exceeded 8800 ng Sn/g in the marina complex sediment. Based on the ratio of tributyltin to total butyltins, it appears that the marina sediments are the source of contamination of the surrounding area. There is evidence that vessels from neighboring islands may also be a source of fresh TBT. Copper concentrations increase over time up to the present. Gradients of virtually all metals and metalloids extended away from the marina complex. NOAA sediment quality guidelines were exceeded for As, Pb, Cu, Zn, and Hg.

Development of the RANCOR Rotary-Percussive Coring System for Mars Sample Return

NASA Technical Reports Server (NTRS)

Paulsen, Gale; Indyk, Stephen; Zacny, Kris

2014-01-01

A RANCOR drill was designed to fit a Mars Exploration Rover (MER) class vehicle. The low mass of 3 kg was achieved by using the same actuator for three functions: rotation, percussions, and core break-off. Initial testing of the drill exposed an unexpected behavior of an off-the-shelf sprag clutch used to couple and decouple rotary-percussive function from the core break off function. Failure of the sprag was due to the vibration induced during percussive drilling. The sprag clutch would back drive in conditions where it was expected to hold position. Although this did not affect the performance of the drill, it nevertheless reduced the quality of the cores produced. Ultimately, the sprag clutch was replaced with a custom ratchet system that allowed for some angular displacement without advancing in either direction. Replacing the sprag with the ratchet improved the collected core quality. Also, premature failure of a 300-series stainless steel percussion spring was observed. The 300-series percussion spring was ultimately replaced with a music wire spring based on performances of previously designed rotary-percussive drill systems.

Variations in soil detachment rates after wildfire as a function of soil depth, flow properties, and root properties

USGS Publications Warehouse

Moody, John A.; Nyman, Peter

2013-01-01

Wildfire affects hillslope erosion through increased surface runoff and increased sediment availability, both of which contribute to large post-fire erosion events. Relations between soil detachment rate, soil depth, flow and root properties, and fire impacts are poorly understood and not represented explicitly in commonly used post-fire erosion models. Detachment rates were measured on intact soil cores using a modified tilting flume. The cores were mounted flush with the flume-bed and a measurement was made on the surface of the core. The core was extruded upward, cut off, and another measurement was repeated at a different depth below the original surface of the core. Intact cores were collected from one site burned by the 2010 Fourmile Canyon (FMC) fire in Colorado and from one site burned by the 2010 Pozo fire in California. Each site contained contrasting vegetation and soil types. Additional soil samples were collected alongside the intact cores and were analyzed in the laboratory for soil properties (organic matter, bulk density, particle-size distribution) and for root properties (root density and root-length density). Particle-size distribution and root properties were different between sites, but sites were similar in terms of bulk density and organic matter. Soil detachment rates had similar relations with non-uniform shear stress and non-uniform unit stream power. Detachment rates within single sampling units displayed a relatively weak and inconsistent relation to flow variables. When averaged across all clusters, the detachment rate displayed a linear relation to shear stress, but variability in soil properties meant that the shear stress accounted for only a small proportion of the overall variability in detachment rates (R2 = 0.23; R2 is the coefficient of determination). Detachment rate was related to root-length density in some clusters (R2 values up to 0.91) and unrelated in others (R2 values 2 value improved and the range of exponents became narrower by applying a multivariate regression model where boundary shear stress and root-length density were included as explanatory variables. This suggests that an erodibility parameter which incorporates the effects of both flow and root properties on detachment could improve the representation of sediment availability after wildfire.

Trace Metals and Lead Isotopes in modern Sediments Near Rio de Janeiro, Brazil

NASA Astrophysics Data System (ADS)

Boyle, E. A.; Lazzari, L.; Wagener, A. L.; Carreira, R.; Godoy, J. M.; Noble, A.; Carrasco, G. G.; Moos, S. B.

2014-12-01

This work focuses on the export of trace metals and combustion residues from land to ocean and on the Southeast continental margin of Brazil and its historical variability using stable lead isotopes. Two sediment cores were collected, one in highly impacted Guanabara Bay and the other on the Southeast continental shelf. Continental shelf samples were analyzed for trace element concentrations [Mn (117±50 ppm), Ni (6.5±2.3 ppm), Zn (5.0±1.5), (233±46 ppm), ], Pb (5.4±2.4 ppm), as well as Cu, Ag, Cd, Sr, Ba, Tl, U and Pb isotope ratios & Pb-210. Most of the elements show higher concentrations on the upper part of the core compared to the bottom. Downcore changes of the concentrations of these elements were similar. The sediments of adjacent rivers and bays around the upper section of the southeast continental shelf of Brazil are considered highly enriched with Pb, Zn, Cu and Cr such as Guanabara Bay, Sepetiba Bay and Paraíba do Sul River compared with the natural concentrations and other regions in the world. A [Pb] maximum is seen between samples from 24 to 43 cm (~8 ppm). Utilization of tetraethyl lead (TEL) gasoline in Brazil was phased out beginning in 1983 and was largely completed by 1988. Continental shelf Pb-206/Pb-207 varies between 1.174 near the core top to 1.190 at 100 cm, with a sharp difference between samples at 6 and 8 cm. Higher core top Pb, Zn, and Ni corroborate the recent anthropogenic influence on the southeast continental shelf of Brazil. For Guanabara Bay sediment samples [Pb] varies between 90 ppm near the top to 1 ppm at the bottom. Pb-206/Pb-207 varies between 1.161 near the core top to 1.165 near the bottom. Using triple isotope plots we can discern different sources of lead to the region and how these vary with time.

SIMS depth profiling of working environment nanoparticles

NASA Astrophysics Data System (ADS)

Konarski, P.; Iwanejko, I.; Mierzejewska, A.

2003-01-01

Morphology of working environment nanoparticles was analyzed using sample rotation technique in secondary ion mass spectrometry (SIMS). The particles were collected with nine-stage vacuum impactor during gas tungsten arc welding (GTAW) process of stainless steel and shielded metal arc welding (SMAW) of mild steel. Ion erosion of 300-400 nm diameter nanoparticles attached to indium substrate was performed with 2 keV, 100 μm diameter, Ar + ion beam at 45° ion incidence and 1 rpm sample rotation. The results show that both types of particles have core-shell morphology. A layer of fluorine, chlorine and carbon containing compounds covers stainless steel welding fume particles. The cores of these particles are enriched in iron, manganese and chromium. Outer shell of mild steel welding fume particles is enriched in carbon, potassium, chlorine and fluorine, while the deeper layers of these nanoparticles are richer in main steel components.

Deposition and chemistry of bottom sediments in Cochiti Lake, north-central New Mexico

USGS Publications Warehouse

Wilson, Jennifer T.; Van Metre, Peter C.

2000-01-01

Bottom sediments were sampled at seven sites in Cochiti Lake in September 1996. Sediment cores penetrating the entire lacustrine sediment sequence were collected at one site near the dam. Surficial sediments were sampled at the near-dam site and six other sites located along the length of the reservoir. Analyses included grain size, major and trace elements, organochlorine compounds, polycyclic aromatic hydrocarbons (PAH's), and radionuclides. Concentrations of trace elements, organic compounds, and radionuclides are similar to those in other Rio Grande reservoirs and are low compared to published sediment-quality guidelines. Most elements and compounds that were detected did not show trends in the age estimated sediment cores with the exception of a decreasing trend in total DDT concentrations from about 1980 to 1992. The mixture of PAH's suggests that the increase is caused by inputs of fuel-related PAH and not combustion- related PAH.

High Resolution Continuous Flow Analysis System for Polar Ice Cores

NASA Astrophysics Data System (ADS)

Dallmayr, Remi; Azuma, Kumiko; Yamada, Hironobu; Kjær, Helle Astrid; Vallelonga, Paul; Azuma, Nobuhiko; Takata, Morimasa

2014-05-01

In the last decades, Continuous Flow Analysis (CFA) technology for ice core analyses has been developed to reconstruct the past changes of the climate system 1), 2). Compared with traditional analyses of discrete samples, a CFA system offers much faster and higher depth resolution analyses. It also generates a decontaminated sample stream without time-consuming sample processing procedure by using the inner area of an ice-core sample.. The CFA system that we have been developing is currently able to continuously measure stable water isotopes 3) and electrolytic conductivity, as well as to collect discrete samples for the both inner and outer areas with variable depth resolutions. Chemistry analyses4) and methane-gas analysis 5) are planned to be added using the continuous water stream system 5). In order to optimize the resolution of the current system with minimal sample volumes necessary for different analyses, our CFA system typically melts an ice core at 1.6 cm/min. Instead of using a wire position encoder with typical 1mm positioning resolution 6), we decided to use a high-accuracy CCD Laser displacement sensor (LKG-G505, Keyence). At the 1.6 cm/min melt rate, the positioning resolution was increased to 0.27mm. Also, the mixing volume that occurs in our open split debubbler is regulated using its weight. The overflow pumping rate is smoothly PID controlled to maintain the weight as low as possible, while keeping a safety buffer of water to avoid air bubbles downstream. To evaluate the system's depth-resolution, we will present the preliminary data of electrolytic conductivity obtained by melting 12 bags of the North Greenland Eemian Ice Drilling (NEEM) ice core. The samples correspond to different climate intervals (Greenland Stadial 21, 22, Greenland Stadial 5, Greenland Interstadial 5, Greenland Interstadial 7, Greenland Stadial 8). We will present results for the Greenland Stadial -8, whose depths and ages are between 1723.7 and 1724.8 meters, and 35.520 to 35.636 kyr b2k 7), respectively. The results show the conductivity measured upstream and downstream of the debubbler. We will calculate the depth resolution of our system and compare it with earlier studies. 1) Bigler at al, "Optimization of High-Resolution Continuous Flow Analysis For Transient Climate Signals in Ice Cores". Environ. Sci. Technol. 2011, 45, 4483-4489 2) Kaufmann et al, "An Improved Continuous Flow Analysis System for High Resolution Field Measurements on Ice Cores". Environmental Environ. Sci. Technol. 2008, 42, 8044-8050 3) Gkinis, V., T. J. Popp, S. J. Johnsen and T, Blunier, 2010: A continuous stream flash evaporator for the calibration of an IR cavity ring down spectrometer for the isotopic analysis of water. Isotopes in Environmental and Health Studies, 46(4), 463-475. 4) McConnell et al, "Continuous ice-core chemical analyses using inductively coupled plasma mass spectrometry. Environ. Sci. Technol. 2002, 36, 7-11 5) Rhodes et al, "Continuous methane measurements from a late Holocene Greenland ice core : Atmospheric and in-situ signals" Earth and Planetary Science Letters. 2013, 368, 9-19 6) Breton et al, "Quantifying Signal Dispersion in a Hybrid Ice Core Melting System". Environ. Sci. Technol. 2012, 46, 11922-11928 7) Rasmussen et al, " A first chronology for the NEEM ice core". Climate of the Past. 2013, 9, 2967--3013

Core descriptions, core photographs, physical property logs and surface textural data of sediment cores recovered from the continental shelf of the Monterey Bay National Marine Sanctuary during the research cruises M-1-95-MB, P-2-95-MB, and P-1-97-MB

USGS Publications Warehouse

Orzech, Kevin M.; Dahl, Wendy E.; Edwards, Brian D.

2001-01-01

In response to the 1992 creation of the Monterey Bay National Marine Sanctuary (MBNMS), the United States Geological Survey (USGS) initiated a multiyear investigation of the Sanctuary continental margin. As part of the investigative effort, this report summarizes the shipboard procedures, subsequent laboratory analyses, and data results from three seafloor sampling cruises conducted on the continental shelf between Monterey peninsula, CA and San Francisco, CA. The cruises were conducted in 1995 aboard the NOAA Ship McArthur (M-1-95-MB) and in 1995 and 1997 aboard the R/V Point Sur (P-2-95-MB and P-1-97-MB). Scientists and representatives from the Environmental Protection Agency (EPA), the National Oceanic and Atmospheric Administration (NOAA), the California Department of Fish and Game (CDFG), the University of California Santa Cruz (UCSC), and the San Jose State University Moss Landing Marine Laboratory (SJSU-MLML) supported the research effort. In this report we present sediment descriptions, sediment textural data, physical property logs, station metadata, and photographs of subcores from a total of three hundred and eighty four sample stations. At these sites either a box corer, MultiCore™r, grab sampler or a combination of these sampling devices were used to collect the sea floor sediments. The report is presented in an interactive web-based format with each mapped core station linked to the corresponding description and photo, and to a spreadsheet of surface texture and other sampling data.

Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora.

PubMed

Leroy, Thierry; De Bellis, Fabien; Legnate, Hyacinthe; Musoli, Pascal; Kalonji, Adrien; Loor Solórzano, Rey Gastón; Cubry, Philippe

2014-06-01

The management of diversity for conservation and breeding is of great importance for all plant species and is particularly true in perennial species, such as the coffee Coffea canephora. This species exhibits a large genetic and phenotypic diversity with six different diversity groups. Large field collections are available in the Ivory Coast, Uganda and other Asian, American and African countries but are very expensive and time consuming to establish and maintain in large areas. We propose to improve coffee germplasm management through the construction of genetic core collections derived from a set of 565 accessions that are characterized with 13 microsatellite markers. Core collections of 12, 24 and 48 accessions were defined using two methods aimed to maximize the allelic diversity (Maximization strategy) or genetic distance (Maximum-Length Sub-Tree method). A composite core collection of 77 accessions is proposed for both objectives of an optimal management of diversity and breeding. This core collection presents a gene diversity value of 0.8 and exhibits the totality of the major alleles (i.e., 184) that are present in the initial set. The seven proposed core collections constitute a valuable tool for diversity management and a foundation for breeding programs. The use of these collections for collection management in research centers and breeding perspectives for coffee improvement are discussed.

Immunophenotype Discovery, Hierarchical Organization, and Template-Based Classification of Flow Cytometry Samples

DOE PAGES

Azad, Ariful; Rajwa, Bartek; Pothen, Alex

2016-08-31

We describe algorithms for discovering immunophenotypes from large collections of flow cytometry samples and using them to organize the samples into a hierarchy based on phenotypic similarity. The hierarchical organization is helpful for effective and robust cytometry data mining, including the creation of collections of cell populations’ characteristic of different classes of samples, robust classification, and anomaly detection. We summarize a set of samples belonging to a biological class or category with a statistically derived template for the class. Whereas individual samples are represented in terms of their cell populations (clusters), a template consists of generic meta-populations (a group ofmore » homogeneous cell populations obtained from the samples in a class) that describe key phenotypes shared among all those samples. We organize an FC data collection in a hierarchical data structure that supports the identification of immunophenotypes relevant to clinical diagnosis. A robust template-based classification scheme is also developed, but our primary focus is in the discovery of phenotypic signatures and inter-sample relationships in an FC data collection. This collective analysis approach is more efficient and robust since templates describe phenotypic signatures common to cell populations in several samples while ignoring noise and small sample-specific variations. We have applied the template-based scheme to analyze several datasets, including one representing a healthy immune system and one of acute myeloid leukemia (AML) samples. The last task is challenging due to the phenotypic heterogeneity of the several subtypes of AML. However, we identified thirteen immunophenotypes corresponding to subtypes of AML and were able to distinguish acute promyelocytic leukemia (APL) samples with the markers provided. Clinically, this is helpful since APL has a different treatment regimen from other subtypes of AML. Core algorithms used in our data analysis are available in the flowMatch package at www.bioconductor.org. It has been downloaded nearly 6,000 times since 2014.« less

Immunophenotype Discovery, Hierarchical Organization, and Template-Based Classification of Flow Cytometry Samples

DOE Office of Scientific and Technical Information (OSTI.GOV)

Azad, Ariful; Rajwa, Bartek; Pothen, Alex

We describe algorithms for discovering immunophenotypes from large collections of flow cytometry samples and using them to organize the samples into a hierarchy based on phenotypic similarity. The hierarchical organization is helpful for effective and robust cytometry data mining, including the creation of collections of cell populations’ characteristic of different classes of samples, robust classification, and anomaly detection. We summarize a set of samples belonging to a biological class or category with a statistically derived template for the class. Whereas individual samples are represented in terms of their cell populations (clusters), a template consists of generic meta-populations (a group ofmore » homogeneous cell populations obtained from the samples in a class) that describe key phenotypes shared among all those samples. We organize an FC data collection in a hierarchical data structure that supports the identification of immunophenotypes relevant to clinical diagnosis. A robust template-based classification scheme is also developed, but our primary focus is in the discovery of phenotypic signatures and inter-sample relationships in an FC data collection. This collective analysis approach is more efficient and robust since templates describe phenotypic signatures common to cell populations in several samples while ignoring noise and small sample-specific variations. We have applied the template-based scheme to analyze several datasets, including one representing a healthy immune system and one of acute myeloid leukemia (AML) samples. The last task is challenging due to the phenotypic heterogeneity of the several subtypes of AML. However, we identified thirteen immunophenotypes corresponding to subtypes of AML and were able to distinguish acute promyelocytic leukemia (APL) samples with the markers provided. Clinically, this is helpful since APL has a different treatment regimen from other subtypes of AML. Core algorithms used in our data analysis are available in the flowMatch package at www.bioconductor.org. It has been downloaded nearly 6,000 times since 2014.« less

Vertical profile, source apportionment, and toxicity of PAHs in sediment cores of a wharf near the coal-based steel refining industrial zone in Kaohsiung, Taiwan.

PubMed

Chen, Chih-Feng; Chen, Chiu-Wen; Ju, Yun-Ru; Dong, Cheng-Di

2016-03-01

Three sediment cores were collected from a wharf near a coal-based steel refining industrial zone in Kaohsiung, Taiwan. Analyses for 16 polycyclic aromatic hydrocarbons (PAHs) of the US Environmental Protection Agency priority list in the core sediment samples were conducted using gas chromatography-mass spectrometry. The vertical profiles of PAHs in the core sediments were assessed, possible sources and apportionment were identified, and the toxicity risk of the core sediments was determined. The results from the sediment analyses showed that total concentrations of the 16 PAHs varied from 11774 ± 4244 to 16755 ± 4593 ng/g dry weight (dw). Generally, the vertical profiles of the PAHs in the sediment cores exhibited a decreasing trend from the top to the lower levels of the S1 core and an increasing trend of PAHs from the top to the lower levels of the S2 and S3 cores. Among the core sediment samples, the five- and six-ring PAHs were predominantly in the S1 core, ranging from 42 to 54 %, whereas the composition of the PAHs in the S2 and S3 cores were distributed equally across three groups: two- and three-ring, four-ring, and five- and six-ring PAHs. The results indicated that PAH contamination at the site of the S1 core had a different source. The molecular indices and principal component analyses with multivariate linear regression were used to determine the source contributions, with the results showing that the contributions of coal, oil-related, and vehicle sources were 38.6, 35.9, and 25.5 %, respectively. A PAH toxicity assessment using the mean effect range-median quotient (m-ERM-q, 0.59-0.79), benzo[a]pyrene toxicity equivalent (TEQ(carc), 1466-1954 ng TEQ/g dw), and dioxin toxicity equivalent (TEQ(fish), 3036-4174 pg TEQ/g dw) identified the wharf as the most affected area. The results can be used for regular monitoring, and future pollution prevention and management should target the coal-based industries in this region for pollution reduction.

Viscous-sludge sample collector

DOEpatents

Not Available

1979-01-01

A vertical core sample collection system for viscous sludge is disclosed. A sample tube's upper end has a flange and is attached to a piston. The tube and piston are located in the upper end of a bore in a housing. The bore's lower end leads outside the housing and has an inwardly extending rim. Compressed gas, from a storage cylinder, is quickly introduced into the bore's upper end to rapidly accelerate the piston and tube down the bore. The lower end of the tube has a high sludge entering velocity to obtain a full-length sludge sample without disturbing strata detail. The tube's downward motion is stopped when its upper end flange impacts against the bore's lower end inwardly extending rim.

Viscous sludge sample collector

DOEpatents

Beitel, George A [Richland, WA

1983-01-01

A vertical core sample collection system for viscous sludge. A sample tube's upper end has a flange and is attached to a piston. The tube and piston are located in the upper end of a bore in a housing. The bore's lower end leads outside the housing and has an inwardly extending rim. Compressed gas, from a storage cylinder, is quickly introduced into the bore's upper end to rapidly accelerate the piston and tube down the bore. The lower end of the tube has a high sludge entering velocity to obtain a full-length sludge sample without disturbing strata detail. The tube's downward motion is stopped when its upper end flange impacts against the bore's lower end inwardly extending rim.

Transport of Organic Contaminants Mobilized from Coal through Sandstone Overlying a Geological Carbon Sequestration Reservoir

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhong, Lirong; Cantrell, Kirk J.; Bacon, Diana H.

2014-02-01

Column experiments were conducted using a wetted sandstone rock installed in a tri-axial core holder to study the flow and transport of organic compounds mobilized by scCO2 under simulated geologic carbon storage (GCS) conditions. The sandstone rock was collected from a formation overlying a deep saline reservoir at a GCS demonstration site. Rock core effluent pressures were set at 0, 500, or 1000 psig and the core temperature was set at 20 or 50°C to simulate the transport to different subsurface depths. The concentrations of the organic compounds in the column effluent and their distribution within the sandstone core weremore » monitored. Results indicate that the mobility though the core sample was much higher for BTEX compounds than for naphthalene. Retention of organic compounds from the vapor phase to the core appeared to be primarily controlled by partitioning from the vapor phase to the aqueous phase. Adsorption to the surfaces of the wetted sandstone was also significant for naphthalene. Reduced temperature and elevated pressure resulted in greater partitioning of the mobilized organic contaminants into the water phase.« less

Guano exposed: Impact of aerobic conditions on bat fecal microbiota.

PubMed

Fofanov, Viacheslav Y; Furstenau, Tara N; Sanchez, Daniel; Hepp, Crystal M; Cocking, Jill; Sobek, Colin; Pagel, Nicole; Walker, Faith; Chambers, Carol L

2018-06-01

Bats and their associated guano microbiota provide important terrestrial and subterranean ecosystem services and serve as a reservoir for a wide range of epizootic and zoonotic diseases. Unfortunately, large-scale studies of bats and their guano microbiotas are limited by the time and cost of sample collection, which requires specially trained individuals to work at night to capture bats when they are most active. Indirectly surveying bat gut microbiota through guano deposits could be a more cost-effective alternative, but it must first be established whether the postdefecation exposure to an aerobic environment has a large impact on the guano microbial community. A number of recent studies on mammalian feces have shown that the impact of aerobic exposure is highly species specific; therefore, it is difficult to predict how exposure will affect the bat guano microbiota without empirical data. In our study, we collected fresh guano samples from 24 individuals of 10 bat species that are common throughout the arid environments of the American southwest and subjected the samples to 0, 1, and 12 hr of exposure. The biodiversity decreased rapidly after the shift from an anaerobic to an aerobic environment-much faster than previously reported in mammalian species. However, the relative composition of the core guano microbiota remained stable and, using highly sensitive targeted PCR methods, we found that pathogens present in the original, non-exposed samples could still be recovered after 12 hr of exposure. These results suggest that with careful sample analysis protocols, a more efficient passive collection strategy is feasible; for example, guano could be collected on tarps placed near the roost entrance. Such passive collection methods would greatly reduce the cost of sample collection by allowing more sites or roosts to be surveyed with a fraction of trained personnel, time, and effort investments needed.

Spatial distribution and trends in trace elements, polycyclic aromatic hydrocarbons, organochlorine pesticides, and polychlorinated biphenyls in Lake Worth sediment, Fort Worth, Texas

USGS Publications Warehouse

Harwell, Glenn Richard; Van Metre, Peter C.; Wilson, Jennifer T.; Mahler, Barbara J.

2003-01-01

In spring 2000, the Texas Department of Health issued a fish consumption advisory for Lake Worth in Fort Worth, Texas, because of elevated concentrations of polychlorinated biphenyls (PCBs) in fish. In response to the advisory and in cooperation with the U.S. Air Force, the U.S. Geological Survey collected 21 surficial sediment samples and three gravity core sediment samples to assess the spatial distribution and historical trends of selected hydrophobic contaminants, including PCBs, and to determine, to the extent possible, sources of hydrophobic contaminants to Lake Worth. Compared to reference (background) concentrations in the upper lake, elevated PCB concentrations were detected in the surficial sediment samples collected in Woods Inlet, which receives surface runoff from Air Force facilities and urban areas. Gravity cores from Woods Inlet and from the main part of the lake near the dam indicate that the concentrations of PCBs were three to five times higher in the 1960s than in 2000. A regression method was used to normalize sediment concentrations of trace elements for natural variations and to distinguish natural and anthropogenic contributions to sediments. Concentrations of several trace elements—cadmium, chromium, copper, lead, and zinc—were elevated in sediments in Woods Inlet, along the shoreline of Air Force facilities, and in the main lake near the dam. Concentrations of these five trace elements have decreased since 1970. Polycyclic aromatic hydrocarbons also were elevated in the same areas of the lake. Concentrations of total polycyclic aromatic hydrocarbons, normalized with organic carbon, were mostly stable in the upper lake but steadily increased near the dam, except for small decreases since 1980. The Woods Inlet gravity core showed the largest increase of the three core sites beginning about 1940; total polycyclic aromatic hydrocarbon concentrations in post-1940 sediments from the core showed three apparent peaks about 1960, 1984, and 2000. The concentrations of organochlorine pesticides were low relative to consensus-based sediment-quality guidelines and either decreased or remained constant since 1970. The two likely sources of hydrophobic contaminants to the lake are urban areas around the lake and the drainage area of Meandering Road Creek that contributes runoff to Woods Inlet and includes Air Force facilities.

Contamination Knowledge Strategy for the Mars 2020 Sample-Collecting Rover

NASA Technical Reports Server (NTRS)

Farley, K. A.; Williford, K.; Beaty, D W.; McSween, H. Y.; Czaja, A. D.; Goreva, Y. S.; Hausrath, E.; Herd, C. D. K.; Humayun, M.; McCubbin, F. M.;

Influence of item distribution pattern and abundance on efficiency of benthic core sampling

USGS Publications Warehouse

Behney, Adam C.; O'Shaughnessy, Ryan; Eichholz, Michael W.; Stafford, Joshua D.

2014-01-01

ore sampling is a commonly used method to estimate benthic item density, but little information exists about factors influencing the accuracy and time-efficiency of this method. We simulated core sampling in a Geographic Information System framework by generating points (benthic items) and polygons (core samplers) to assess how sample size (number of core samples), core sampler size (cm2), distribution of benthic items, and item density affected the bias and precision of estimates of density, the detection probability of items, and the time-costs. When items were distributed randomly versus clumped, bias decreased and precision increased with increasing sample size and increased slightly with increasing core sampler size. Bias and precision were only affected by benthic item density at very low values (500–1,000 items/m2). Detection probability (the probability of capturing ≥ 1 item in a core sample if it is available for sampling) was substantially greater when items were distributed randomly as opposed to clumped. Taking more small diameter core samples was always more time-efficient than taking fewer large diameter samples. We are unable to present a single, optimal sample size, but provide information for researchers and managers to derive optimal sample sizes dependent on their research goals and environmental conditions.

Lightweight Low Force Rotary Percussive Coring Tool for Planetary Applications

NASA Technical Reports Server (NTRS)

Hironaka, Ross; Stanley, Scott

2010-01-01

A prototype low-force rotary-percussive rock coring tool for use in acquiring samples for geological surveys in future planetary missions was developed. The coring tool could eventually enable a lightweight robotic system to operate from a relatively small (less than 200 kg) mobile or fixed platform to acquire and cache Mars or other planetary rock samples for eventual return to Earth for analysis. To gain insight needed to design an integrated coring tool, the coring ability of commercially available coring bits was evaluated for effectiveness of varying key parameters: weight-on-bit, rotation speed, percussive rate and force. Trade studies were performed for different methods of breaking a core at its base and for retaining the core in a sleeve to facilitate sample transfer. This led to a custom coring tool design which incorporated coring, core breakage, core retention, and core extraction functions. The coring tool was tested on several types of rock and demonstrated the overall feasibility of this approach for robotic rock sample acquisition.

Variations in the depths of sulfate-methane transition zone (SMTZ) in UBGH2-6 drilling site in Ulleung Basin, East sea of Korea

NASA Astrophysics Data System (ADS)

Kim, Y.; Chun, J. H.; Bahk, J. J.; Ryu, B. J.; Um, I. K.

2016-12-01

The second Ulleung Basin Gas hydrate Drilling Expedition (UBGH2) was conducted in the Ulleung Basin, East Sea of Korea in 2010. Gas hydrates were observed in depth interval from 140 mbsf (meter below seafloor) to 160 mbsf in core sediment taken from UBGH2-6 drilling site, located in the north-western part of the basin (2,164 m water depth). To characterize the geochemical process for UBGH2-6 core sediments, pore fluid samples and headspace gas samples were extracted from core sediments and analyzed SO42- and CH4 concentrations. Based on SO42- and CH4 concentrations, sulfate-methane transition zone (SMTZ), where SO42- is depleted to zero and CH4 starts to increase was defined at a depth of approximately 6.50 mbsf in 2010. And in order to identify the variations in the depths of SMTZ at UBGH2-6 drilling site since 2010 (UBGH2), whole-round piston cores were collected from UBGH2-6 drilling site from 2013 to 2015. We analyzed SO42- and CH4 concentrations and identified the SMTZ for the last 3 years. The depths of SMTZ for the cores obtained from 2013, 2014 and 2015 are approximately 3.50 mbsf, 5.00 mbsf, and 5.00 mbsf respectively. The analysis results indicate that the SMTZ in 2013, 2014, and 2015 are shallower than the SMTZ of 2010.

Uptake of PAHs by cabbage root and leaf in vegetable plots near a large coking manufacturer and associations with PAHs in cabbage core.

PubMed

Xiong, GuanNan; Zhang, YunHui; Duan, YongHong; Cai, ChuanYang; Wang, Xin; Li, JingYa; Tao, Shu; Liu, WenXin

2017-08-01

Samples of ambient air (including gaseous and particulate phases), dust fall, surface soil, rhizosphere soil, core (edible part), outer leaf, and root of cabbage from eight vegetable plots near a large coking manufacturer were collected during the harvest period. Concentrations, compositions, and distributions of parent PAHs in different samples were determined. Our results indicated that most of the parent PAHs in air occurred in the gaseous phase, dominated by low molecular weight (LMW) species with two to three rings. Specific isomeric ratios and principal component analysis were employed to preliminarily identify the local sources of parent PAHs emitted. The main emission sources of parent PAHs could be apportioned as a mixture of coal combustion, coking production, and traffic tailing gas. PAH components with two to four rings were prevailing in dust fall, surface soil, and rhizosphere soil. Concentrations of PAHs in surface soil exhibited a significant positive correlation with topsoil TOC fractions. Compositional profiles in outer leaf and core of cabbage, dominated by LMW species, were similar to those in the local air. Overall, the order of parent PAH concentration in cabbage was outer leaf > root > core. Partial correlation analysis and multivariate linear stepwise regression revealed that PAH concentrations in cabbage core were closely associated with PAHs present both in root and in outer leaf, namely, affected by adsorption, then absorption, and translocation of PAHs from rhizosphere soil and ambient air, respectively.

30 CFR 870.18 - General rules for calculating excess moisture.

Code of Federal Regulations, 2010 CFR

2010-07-01

... Collection of Coal Samples from Core; and, D1412-93, Standard Test Method for Equilibrium Moisture of Coal at... cautions: (a) You or your customer may do any test required by §§ 870.19 and 870.20. But whoever does a test, you are to keep test results and all related records for at least six years after the test date...

Petrology of lunar rocks and implication to lunar evolution

NASA Technical Reports Server (NTRS)

Ridley, W. I.

1976-01-01

Recent advances in lunar petrology, based on studies of lunar rock samples available through the Apollo program, are reviewed. Samples of bedrock from both maria and terra have been collected where micrometeorite impact penetrated the regolith and brought bedrock to the surface, but no in situ cores have been taken. Lunar petrogenesis and lunar thermal history supported by studies of the rock sample are discussed and a tentative evolutionary scenario is constructed. Mare basalts, terra assemblages of breccias, soils, rocks, and regolith are subjected to elemental analysis, mineralogical analysis, trace content analysis, with studies of texture, ages and isotopic composition. Probable sources of mare basalts are indicated.

Family History Collection Practices: National Survey of Pediatric Primary Care Providers.

PubMed

Tarini, Beth A; Gornick, Michele C; Zikmund-Fisher, Brian J; Saal, Howard M; Edmondson, Laurie; Uhlmann, Wendy R

2018-05-01

While family history (FH) collection is a core responsibility of pediatric primary care providers (PCPs), few details about this practice are known. We surveyed a random national sample of 1200 pediatricians and family medicine physicians about FH collection practices. A total of 86% of respondents (n = 289 pediatricians; n = 152 family medicine physicians) indicated that they collect a FH "always" or "most of the time" with 77% reporting collection at the first visit, regardless of whether it is a health maintenance or problem-focused visit. Less than half ask about relatives other than parents, siblings, or grandparents (36.3%). Among respondents, 42% routinely update the FH at every health maintenance visit while 6% updated FH at every visit. Pediatric PCPs use a variety of methods to collect a FH that is limited in scope and variably updated. Our results suggest that interventions are needed to help pediatric PCPs collect a systematic, efficient, and updated FH.

Sources of polychlorinated biphenyls to Devils Swamp Lake near Baton Rouge, Louisiana

USGS Publications Warehouse

Van Metre, Peter C.; Wilson, Jennifer T.; Kimball, Briant A.

2006-01-01

Devils Swamp Lake near Baton Rouge, Louisiana, created in 1973 by dredging in Devils Swamp along the Mississippi River, is contaminated with polychlorinated biphenyls (PCBs) from historical industrial discharges. This study involved the investigation of the occurrence, distribution, and sources of PCBs in the lake, including the possible historical contribution of PCBs from a hazardous-chemical disposal facility by way of a wastewater drainage ditch that was used from 1971 to 1993. Six bed sediment cores from the lake and three bed sediment grab samples from the drainage ditch were collected; 61 subsamples from selected intervals in five of the six cores and the three grab samples from the ditch were analyzed for PCBs using an immunoassay screening method. Sixteen of the core subsamples and one ditch sample were analyzed for organochlorine pesticides, PCBs, polycyclic aromatic hydrocarbons (PAHs) (15 samples), and major and trace elements. PCB congener profiles and a factor analysis of congener composition indicate that PCBs in sediment from the drainage ditch and in lake sediment deposited near the canal since the mid-1980s are similar, which indicates the disposal facility, by way of the wastewater drainage ditch, is the source of the PCBs. Sediment from several hundred meters down the lake to the west, near where Bayou Baton Rouge enters the lake, had a different PCB composition and in a sample deposited in the early 1980s, a much higher concentration, indicating a second source of PCBs in the watershed of Bayou Baton Rouge. Large differences in PAHs and metals between sediment near the ditch and sediment near Bayou Baton Rouge support this conclusion. The identity of the Bayou Baton Rouge source(s) cannot be established using available data. The short duration and relatively high concentrations of PCBs from the bayou source indicate either a spill or a flood-related release-there was a large flood on the Mississippi River in 1983. Older (deeper) samples from cores near the drainage ditch (dated as deposited before the mid-1980s) had PCB compositions that indicate a mixture of sources (Bayou Baton Rouge and the drainage ditch). Elevated PCB concentrations in sediment from the drainage ditch and cores from near the mouth of the ditch in recent (post-2000) samples indicate that some PCB inputs from the ditch might still be occurring.

Shipboard report for Hawaii GLORIA ground-truth cruise F11-88-HW, 25 Oct.-7 Nov., 1988

USGS Publications Warehouse

Clague, David A.; Holcomb, Robin T.; Torresan, Michael E.; Ross, Stephanie L.

1989-01-01

GLORIA side-scan imagery of the region north of Oahu was collected during two cruises in the spring of 1988. These cruises, F4-88-HW and F6-88-HW, discovered an extensive lava flow field on the Hawaiian Arch and extensive landslide deposits that moved down through the Hawaiian Moat and up onto the Hawaiian Arch. These landslide deposits were apparently derived from two separate submarine failures on the north side of Molokai and the northeast side of Oahu. The cruise reports for these cruises will be released as USGS Open-File Reports in 1989.This report summarizes the results of a subsequent cruise, F11-88-HW on the R/V Farnella, to sample some of the features discovered during the prior GLORIA surveys. Cruise F11-88-HW began in Honolulu on Oct. 25, 1988 and ended in Honolulu on Nov. 7, 1988. The major objectives of the cruise were to sample the giant lava field north of Oahu (Figure 1), to sample an apparently young flow between Oahu and Kauai (Figure 2) , to do some preliminary sampling of the deposits of the Nuuanu giant landslide northnortheast of Oahu, and to determine the thickness of sediment on flows in this lava field to compare to the acoustic backscatter variations observed in the GLORIA imagery of the flow field.These objectives were modified during the cruise due to rough seas which limited the deployment of the camera sled and to problems with the coring equipment which limited us to collecting 10 ft gravity cores. In particular, we did not complete any work aimed directly at the Nuuanu landslide deposits. The comparison of sediment thickness on the flows to observed acoustic backscatter on the GLORIA images was not completed because flows with intermediate backscatter were found to have thicker sediment than we could sample. The other objectives were achieved and lava samples of the flows and vents of the flow field were recovered from 23 locations. Gravity cores on top of the flows also determined the sediment thickness at 12 locations. The flow between Oahu and Kauai was sampled and photographed and found to be young, but clearly not historic in age.

Composition and depth distribution of hydrocarbons in Barataria Bay marsh sediments after the Deepwater Horizon oil spill.

PubMed

Dincer Kırman, Zeynep; Sericano, José L; Wade, Terry L; Bianchi, Thomas S; Marcantonio, Franco; Kolker, Alexander S

2016-07-01

In 2010, an estimate 4.1 million barrels of oil were accidentally released into the Gulf of Mexico (GoM) during the Deepwater Horizon (DWH) Oil Spill. One and a half years after this incident, a set of subtidal and intertidal marsh sediment cores were collected from five stations in Barataria Bay, Louisiana, USA, and analyzed to determine the spatial and vertical distributions and source of hydrocarbon residues based on their chemical composition. An archived core, collected before the DWH oil spill from the same area, was also analyzed to assess the pre-spill hydrocarbon distribution in the area. Analyses of aliphatic hydrocarbons, polycyclic aromatic hydrocarbons (PAHs) and stable carbon isotope showed that the distribution of petroleum hydrocarbons in Barataria Bay was patchy and limited in areal extent. Significant TPH and ΣPAH concentrations (77,399 μg/g and 219,065 ng/g, respectively) were detected in the surface sediments of one core (i.e., core A) to a depth of 9 cm. Based on a sedimentation rate of 0.39 cm yr(-1), determined using (137)Cs, the presence of anthropogenic hydrocarbons in these sediment core deposited ca. 50 to 60 years ago. The historical background hydrocarbon concentrations increased significantly at the sediment surface and can be attributed to recent inputs. Although the oil present in the bay's sediments has undergone moderate weathering, biomarker analyses performed on core A samples likely indicated the presence of hydrocarbons from the DWH oil spill. The effects of oiling events on Barataria Bay and other marsh ecosystems in this region remain uncertain, as oil undergoes weathering changes over time. Copyright © 2016 Elsevier Ltd. All rights reserved.

163 years of refinement: the British Geological Survey sample registration scheme

NASA Astrophysics Data System (ADS)

Howe, M. P.

2011-12-01

The British Geological Survey manages the largest UK geoscience samples collection, including: - 15,000 onshore boreholes, including over 250 km of drillcore - Vibrocores, gravity cores and grab samples from over 32,000 UK marine sample stations. 640 boreholes - Over 3 million UK fossils, including a "type and stratigraphic" reference collection of 250,000 fossils, 30,000 of which are "type, figured or cited" - Comprehensive microfossil collection, including many borehole samples - 290km of drillcore and 4.5 million cuttings samples from over 8000 UK continental shelf hydrocarbon wells - Over one million mineralogical and petrological samples, including 200,00 thin sections The current registration scheme was introduced in 1848 and is similar to that used by Charles Darwin on the Beagle. Every Survey collector or geologist has been issue with a unique prefix code of one or more letters and these were handwritten on preprinted numbers, arranged in books of 1 - 5,000 and 5,001 to 10,000. Similar labels are now computer printed. Other prefix codes are used for corporate collections, such as borehole samples, thin sections, microfossils, macrofossil sections, museum reference fossils, display quality rock samples and fossil casts. Such numbers infer significant immediate information to the curator, without the need to consult detailed registers. The registration numbers have been recorded in a series of over 1,000 registers, complete with metadata including sample ID, locality, horizon, collector and date. Citations are added as appropriate. Parent-child relationships are noted when re-registering subsubsamples. For example, a borehole sample BDA1001 could have been subsampled for a petrological thin section and off-cut (E14159), a fossil thin section (PF365), micropalynological slides (MPA273), one of which included a new holotype (MPK111), and a figured macrofossil (GSE1314). All main corporate collection now have publically-available online databases, such as PalaeoSaurus (fossils), Britrocks (mineralogy and petrology) and ComBo (combined onshore and offshore boreholes). ComBo links to core images, when available. Similar links are under development for Britrocks and PalaeoSaurus, with the latter also to include HR laser scanned digital models. These databases also link to internal and public GIS systems and to the BGS digital field data capture system. PalaeoSaurus holds an identification/authority/date history for each specimen, as well as recording type status, and figure and citation details. Similar comments can be added to Britrocks and ComBo. For several years, the BGS has provided online web access to the databases, for the discovery of physical samples , including parent-child links and citation information. Regretfully, authors frequently fail to cite sample registration numbers (nineteenth century geologists were sometimes better than their twenty-first century counterparts), or to supply copies of, or links to, the data generated, despite it being a condition of sample access. The need for editors and referees to enforce the inclusion of sample registration numbers, and for authors to lodge copies of papers, reports and data with the sample providers, is more important than yet another new database.

Lithologic, natural-gamma, grain-size, and well-construction data for Wright-Patterson Air Force Base, Ohio

USGS Publications Warehouse

Dumouchelle, D.H.; De Roche, Jeffrey T.

1991-01-01

Wright-Patterson Air Force Base, in southwestern Ohio, overlies a buried-valley aquifer. The U.S. Geological Survey installed 35 observation wells at 13 sites on the base from fall 1988 through spring 1990. Fourteen of the wells were completed in bedrock; the remaining wells were completed in unconsolidated sediments. Split-spoon and bedrock cores were collected from all of the bedrock wells. Shelby-tube samples were collected from four wells. The wells were drilled by either the cable-tool or rotary method. Data presented in this report include lithologic and natural-gamma logs, and, for selected sediment samples, grain-size distributions of permeability. Final well-construction details, such as the total depth of well, screened interval, and grouting details, also are presented.

An indoor positioning technology in the BLE mobile payment system

NASA Astrophysics Data System (ADS)

Han, Tiantian; Ding, Lei

2017-05-01

Mobile payment system for large supermarkets, the core function is through the BLE low-power Bluetooth technology to achieve the amount of payment in the mobile payment system, can through an indoor positioning technology to achieve value-added services. The technology by collecting Bluetooth RSSI, the fingerprint database of sampling points corresponding is established. To get Bluetooth module RSSI by the AP. Then, to use k-Nearest Neighbor match the value of the fingerprint database. Thereby, to help businesses find customers through the mall location, combined settlement amount of the customer's purchase of goods, to analyze customer's behavior. When the system collect signal strength, the distribution of the sampling points of RSSI is analyzed and the value is filtered. The system, used in the laboratory is designed to demonstrate the feasibility.

Spatial and temporal distributions of polycyclic aromatic hydrocarbons in sediments from the Songhua River, China

NASA Astrophysics Data System (ADS)

Dong, D.; Guo, Z.; Liu, X.; Hua, X.; Liang, D.

2013-12-01

Polycyclic aromatic hydrocarbons (PAHs), a class of typical persistent organic pollutants, widely exist in the environment and are potentially harmful to human health. They can enter the waters through atmospheric deposition, soil leaching, shipping, sewage discharges and surface runoff. In recent years, many studies on the distributions of PAHs in major rivers, lakes and bays around the world have been carried out. In this study, 9 surface sediments (0-10cm) were sampled from the Songhua River in Jilin and Heilongjiang provinces. The contents of 16 PAHs in the US Environmental Protection Agency list of priority pollutants were determined and their spatial distributions were discussed. Sediment cores (50cm length) in three oxbow lakes in this area were also collected and cut into 2 cm thickness sub-samples. PAHs concentrations in these samples were determined and the cores were dated using a 210Pb geochronology technique. Finally, the sedimentary history of PAHs in the Songhua River since the 1920s was revealed. Results indicated that total concentration of the 16 PAHs analyzed in the surface sediments was 187-2079 ng/g (dry weight), and the mean was 1029 ng/g. Sediments collected from near urban areas (Jilin and Harbin City) contained higher PAHs content. Compared with the domestic and international rivers, the PAHs content in this river sediments is at a medium level. The PAHs profiles showed that 2-3 ring PAHs, especially naphthalene, were dominant in all of the samples. Sedimentary flux can reflect the accumulating history of pollutants better. The PAHs fluxes were low and varied little from the 1920s to 1970s, but higher PAH fluxes were found since the 1980s in each core (Fig. 1). The PAHs sedimentary flux near Harbin City (Shuangcheng) was found changed remarkably. We inferred that the PAHs might be influenced by hydrological conditions, population mobility and economic activity in this area. PAHs sedimentary record in the Songhua River revealed that the economic development in large cities in this area lagged behind the environmental protection. Acknowledgments: This work was supported by Specialized Research Fund for the Doctoral Program of Higher Education (No. 20100061110041), and the Major Science and Technology Program for Water Pollution Control and Treatment, China (No. 2009ZX0707-001-03). Fig. 1 PAHs fluxes vs. year in sediment cores from Songyuan, Shuangcheng (Harbin) and Mulan

K1-95-HW, cruise report 1995: preliminary results. Phase III: sediment chemistry and biological sampling survey

USGS Publications Warehouse

Torresan, M.E.; Hampton, M.A.; Barber, J.H.; Wong, F.L.

1995-01-01

Mamala Bay, off the south shore of the island of Oahu, has been used as a repository of dredged material primarily from Pearl and Honolulu Harbors for over a century. The U.S. Geological Survey, U.S. Army Corps of Engineers, and the U.S. Environmental Protection Agency are conducting an integrated study on the distribution and character of dredged materials as well as the effects of dredged material on the marine environment. A three phase study is providing information to evaluate the effects on seafloor substrate and the benthic fauna. The studies include geophysical profiling and imaging, bottom photography, sampling, chemical and physical analyses of sediment, and evaluations of the benthic population, population density, and adverse impacts to the benthic fauna. Phase 1, conducted in 1993, inventoried the seafloor via remote sensing. Sidescan sonar and subbottom profilers characterized the seafloor in and around the disposal sites, and the resulting products reveal the character and extent of the dredged material. These data were used to plan Phase 2 in 1994, a sampling program that employed subbottom profilers, video and still photography, and seafloor sampling to ground truth the sonar mosaic and identify the seafloor substrates responsible for the various acoustic signatures on the sonar images and subbottom profiles. Box coring provided the samples necessary to distinguish dredged material from native sediment, and for the chemical analyses used to determine contaminant concentrations. Phase 3 studies conducted in June of 1995 consisted of box core sampling for chemical and biological analyses. Specific studies include: infaunal taxonomy and population density, bioassay/bioaccumulation, sediment chemistry, and post-disposal resuspension and transport. The 1995 survey, conducted June 14 through 17, resulted in the collection of 39 box cores from 20 different stations. Multiple box cores were composited at 7 different locations occupied in 1994, to provide the material required for the 7 bioassay and bioaccumulation analyses currently underway (Figure 1). Seventeen of the 20 stations occupied provided the biological samples for the benthic infaunal identification and population density study conducted by Dr. Julie Brock of the University of Hawaii, and the sediment chemistry analyses conducted (and completed) by Quanterra Environmental Laboratories (Figure 1). Seven of the 20 stations occupied in 1995 were occupied in 1994, and provide the data for direct comparison of sediment chemistry at the same sites from two consecutive years. The sum total of the data collected from all three phases of the monitoring program will provide the U.S. Army Corps of Engineers and the U.S. Environmental Protection Agency with the information required to make informed decisions as to the management of the South Oahu disposal site in Mamala Bay.

A simple and inexpensive technique for assessing microbial contamination during drilling operations

NASA Astrophysics Data System (ADS)

Friese, André; Vuillemin, Aurèle; Kallmeyer, Jens; Wagner, Dirk

2016-04-01

Exploration of the Deep Biosphere relies on drilling, which inevitably causes infiltration of drilling fluids, containing allochthonous microbes from the surface, into the core. Therefore it is absolutely necessary to trace contamination of the sediment core in order to identify uncontaminated samples for microbiological investigations. Several techniques have been used in the past, including fluorescent dyes, perfluorocarbon tracers and fluorescent microspheres. Fluorescent dyes are inexpensive and easy to analyze on-site but are sensitive to light, pH and water chemistry. Furthermore, significant sorption to clays can decrease the fluorescence signal. Perfluorocarbon tracers are chemically inert hydrophobic compounds that can be detected with high sensitivity via gas chromatography, which might be a problem for on-site analysis. Samples have to be taken immediately after core retrieval as otherwise the volatile tracer will have diffused out of the core. Microsphere tracers are small (0.2 - 0.5 μm diameter) fluorescent plastic particles that are mixed into the drilling fluid. For analysis, these particles can be extracted from the sediment sample, transferred onto a filter and quantified via fluorescence microscopy. However, they are very expensive and therefore unsuitable for deep drilling operations that need large amounts of drilling fluids. Here, we present an inexpensive contamination control approach using fluorescent pigments initially used for coloring plastics. The price of this tracer is nearly three orders of magnitude lower than conventional microsphere tracers. Its suitability for large drilling campaigns was tested at the ICDP Deep Drilling at Lake Towuti, Sulawesi, Indonesia. The tracer was diluted 1:1000 in lake water, which was used as the drilling fluid. Additionally, a plastic bag filled with 20 mL of undiluted tracer was attached to the core catcher to increase the amount of particles in the liner fluid right at the core. After core retrieval, the core was cut and the liner fluid collected. From each whole round core (WRC) that was taken for microbiological and biogeochemical analyses, small samples of 1 cc were retrieved with sterile cutoff syringes from the rim, the center and an intermediate position. After dilution and homogenization in 9 mL MilliQ water, 10 μL of the sediment slurry was transferred onto a filter membrane and particles counted via fluorescence microscopy. Additionally, particles in the liner fluid were also quantified. This allows the quantification of the amount of drilling fluid that has entered the sediment sample during drilling. The minimum detectable volume of drilling fluid was in the order of single nanoliters per cc of sediment, which is in the range of established techniques. The presented method requires only a minimum of equipment and allows rapid determination of contamination in the sediment core and an easy to handle on-site analysis at low costs. The sensitivity is in the same range as perfluorocarbon and microsphere tracer applications. Thus, it offers an inexpensive but powerful technique for contamination assessment for future drilling campaigns.

Genetic diversity analysis of common beans based on molecular markers

PubMed Central

Gill-Langarica, Homar R.; Muruaga-Martínez, José S.; Vargas-Vázquez, M.L. Patricia; Rosales-Serna, Rigoberto; Mayek-Pérez, Netzahualcoyotl

2011-01-01

A core collection of the common bean (Phaseolus vulgaris L.), representing genetic diversity in the entire Mexican holding, is kept at the INIFAP (Instituto Nacional de Investigaciones Forestales, Agricolas y Pecuarias, Mexico) Germplasm Bank. After evaluation, the genetic structure of this collection (200 accessions) was compared with that of landraces from the states of Oaxaca, Chiapas and Veracruz (10 genotypes from each), as well as a further 10 cultivars, by means of four amplified fragment length polymorphisms (AFLP) +3/+3 primer combinations and seven simple sequence repeats (SSR) loci, in order to define genetic diversity, variability and mutual relationships. Data underwent cluster (UPGMA) and molecular variance (AMOVA) analyses. AFLP analysis produced 530 bands (88.5% polymorphic) while SSR primers amplified 174 alleles, all polymorphic (8.2 alleles per locus). AFLP indicated that the highest genetic diversity was to be found in ten commercial-seed classes from two major groups of accessions from Central Mexico and Chiapas, which seems to be an important center of diversity in the south. A third group included genotypes from Nueva Granada, Mesoamerica, Jalisco and Durango races. Here, SSR analysis indicated a reduced number of shared haplotypes among accessions, whereas the highest genetic components of AMOVA variation were found within accessions. Genetic diversity observed in the common-bean core collection represents an important sample of the total Phaseolus genetic variability at the main Germplasm Bank of INIFAP. Molecular marker strategies could contribute to a better understanding of the genetic structure of the core collection as well as to its improvement and validation. PMID:22215964

Genetic diversity analysis of common beans based on molecular markers.

PubMed

Gill-Langarica, Homar R; Muruaga-Martínez, José S; Vargas-Vázquez, M L Patricia; Rosales-Serna, Rigoberto; Mayek-Pérez, Netzahualcoyotl

2011-10-01

A core collection of the common bean (Phaseolus vulgaris L.), representing genetic diversity in the entire Mexican holding, is kept at the INIFAP (Instituto Nacional de Investigaciones Forestales, Agricolas y Pecuarias, Mexico) Germplasm Bank. After evaluation, the genetic structure of this collection (200 accessions) was compared with that of landraces from the states of Oaxaca, Chiapas and Veracruz (10 genotypes from each), as well as a further 10 cultivars, by means of four amplified fragment length polymorphisms (AFLP) +3/+3 primer combinations and seven simple sequence repeats (SSR) loci, in order to define genetic diversity, variability and mutual relationships. Data underwent cluster (UPGMA) and molecular variance (AMOVA) analyses. AFLP analysis produced 530 bands (88.5% polymorphic) while SSR primers amplified 174 alleles, all polymorphic (8.2 alleles per locus). AFLP indicated that the highest genetic diversity was to be found in ten commercial-seed classes from two major groups of accessions from Central Mexico and Chiapas, which seems to be an important center of diversity in the south. A third group included genotypes from Nueva Granada, Mesoamerica, Jalisco and Durango races. Here, SSR analysis indicated a reduced number of shared haplotypes among accessions, whereas the highest genetic components of AMOVA variation were found within accessions. Genetic diversity observed in the common-bean core collection represents an important sample of the total Phaseolus genetic variability at the main Germplasm Bank of INIFAP. Molecular marker strategies could contribute to a better understanding of the genetic structure of the core collection as well as to its improvement and validation.

On the improvement of blood sample collection at clinical laboratories

PubMed Central

2014-01-01

Background Blood samples are usually collected daily from different collection points, such hospitals and health centers, and transported to a core laboratory for testing. This paper presents a project to improve the collection routes of two of the largest clinical laboratories in Spain. These routes must be designed in a cost-efficient manner while satisfying two important constraints: (i) two-hour time windows between collection and delivery, and (ii) vehicle capacity. Methods A heuristic method based on a genetic algorithm has been designed to solve the problem of blood sample collection. The user enters the following information for each collection point: postal address, average collecting time, and average demand (in thermal containers). After implementing the algorithm using C programming, this is run and, in few seconds, it obtains optimal (or near-optimal) collection routes that specify the collection sequence for each vehicle. Different scenarios using various types of vehicles have been considered. Unless new collection points are added or problem parameters are changed substantially, routes need to be designed only once. Results The two laboratories in this study previously planned routes manually for 43 and 74 collection points, respectively. These routes were covered by an external carrier company. With the implementation of this algorithm, the number of routes could be reduced from ten to seven in one laboratory and from twelve to nine in the other, which represents significant annual savings in transportation costs. Conclusions The algorithm presented can be easily implemented in other laboratories that face this type of problem, and it is particularly interesting and useful as the number of collection points increases. The method designs blood collection routes with reduced costs that meet the time and capacity constraints of the problem. PMID:24406140

The Polar Rock Repository: Rescuing Polar Collections for New Research

NASA Astrophysics Data System (ADS)

Grunow, A.

2016-12-01

Geological field expeditions in polar regions are logistically difficult, financially expensive and can have a significant environmental impact on pristine regions. The scarcity of outcrop in Antarctica (98% ice-covered) makes previously collected rock samples very valuable to the science community. NSF recognized the need for preserving rock, dredge, and terrestrial core samples from polar areas and created the Polar Rock Repository (PRR). The PRR collection allows for full and open access to both samples and metadata via the PRR website. In addition to the physical samples and their basic metadata, the PRR archives supporting materials from the collector, field notebooks, images of the samples, field maps, air photos, thin sections and any associated bibliography/DOI's. Many of these supporting materials are unique. More than 40,000 samples are available from the PRR for scientific analysis to researchers around the globe. Most of the samples cataloged at the PRR were collected more than 30 years ago, some more than 100 years ago. The rock samples and metadata are made available online through an advanced search engine for the PRR website. This allows scientists to "drill down" into search results using categories and look-up object fields similar to websites like Amazon. Results can be viewed in a table, downloaded as a spreadsheet, or plotted on an interactive map that supports display of satellite imagery and bathymetry layers. Samples can be requested by placing them in the `shopping cart'. These old sample collections have been repeatedly used by scientists from around the world. One data request involved locating coal deposits in Antarctica for a global compilation and another for looking at the redox state of batholithic rocks from the Antarctic Peninsula using magnetic susceptibilities of PRR rocks. Sample usage has also included non-traditional geologic studies, such as a search for monopoles in Cenozoic volcanic samples, and remote sensing/spectral imaging of Transantarctic Mountains rocks. Rescuing these collections from universities that no longer want to store the rocks or from researchers who no longer need the samples has resulted in many new publications, new proposals and enormous cost and environmental savings to the U.S. Antarctic science program.

Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species

PubMed Central

Lawler, Stephanie N.; Kellogg, Christina A.; France, Scott C.; Clostio, Rachel W.; Brooke, Sandra D.; Ross, Steve W.

2016-01-01

Cold-water corals, similar to tropical corals, contain diverse and complex microbial assemblages. These bacteria provide essential biological functions within coral holobionts, facilitating increased nutrient utilization and production of antimicrobial compounds. To date, few cold-water octocoral species have been analyzed to explore the diversity and abundance of their microbial associates. For this study, 23 samples of the family Anthothelidae were collected from Norfolk (n = 12) and Baltimore Canyons (n = 11) from the western Atlantic in August 2012 and May 2013. Genetic testing found that these samples comprised two Anthothela species (Anthothela grandiflora and Anthothela sp.) and Alcyonium grandiflorum. DNA was extracted and sequenced with primers targeting the V4–V5 variable region of the 16S rRNA gene using 454 pyrosequencing with GS FLX Titanium chemistry. Results demonstrated that the coral host was the primary driver of bacterial community composition. Al. grandiflorum, dominated by Alteromonadales and Pirellulales had much higher species richness, and a distinct bacterial community compared to Anthothela samples. Anthothela species (A. grandiflora and Anthothela sp.) had very similar bacterial communities, dominated by Oceanospirillales and Spirochaetes. Additional analysis of core-conserved bacteria at 90% sample coverage revealed genus level conservation across Anthothela samples. This core included unclassified Oceanospirillales, Kiloniellales, Campylobacterales, and genus Spirochaeta. Members of this core were previously recognized for their functional capabilities in nitrogen cycling and suggest the possibility of a nearly complete nitrogen cycle within Anthothela species. Overall, many of the bacterial associates identified in this study have the potential to contribute to the acquisition and cycling of nutrients within the coral holobiont. PMID:27092120

Coral-associated bacterial diversity is conserved across two deep-sea Anthothela species

USGS Publications Warehouse

Lawler, Stephanie N.; Kellogg, Christina A.; France, Scott C; Clostio, Rachel W; Brooke, Sandra D.; Ross, Steve W.

2016-01-01

Cold-water corals, similar to tropical corals, contain diverse and complex microbial assemblages. These bacteria provide essential biological functions within coral holobionts, facilitating increased nutrient utilization and production of antimicrobial compounds. To date, few cold-water octocoral species have been analyzed to explore the diversity and abundance of their microbial associates. For this study, 23 samples of the family Anthothelidae were collected from Norfolk (n = 12) and Baltimore Canyons (n = 11) from the western Atlantic in August 2012 and May 2013. Genetic testing found that these samples comprised two Anthothela species (Anthothela grandiflora and Anthothela sp.) and Alcyonium grandiflorum. DNA was extracted and sequenced with primers targeting the V4-V5 variable region of the 16S rRNA gene using 454 pyrosequencing with GS FLX Titanium chemistry. Results demonstrated that the coral host was the primary driver of bacterial community composition. Al. grandiflorum, dominated by Alteromonadales and Pirellulales had much higher species richness, and a distinct bacterial community compared to Anthothela samples. Anthothela species (A. grandiflora and Anthothela sp.) had very similar bacterial communities, dominated by Oceanospirillales and Spirochaetes. Additional analysis of core-conserved bacteria at 90% sample coverage revealed genus level conservation across Anthothela samples. This core included unclassified Oceanospirillales, Kiloniellales, Campylobacterales, and genus Spirochaeta. Members of this core were previously recognized for their functional capabilities in nitrogen cycling and suggest the possibility of a nearly complete nitrogen cycle within Anthothela species. Overall, many of the bacterial associates identified in this study have the potential to contribute to the acquisition and cycling of nutrients within the coral holobiont.

Observations and Modeling of the Green Ocean Amazon 2014/15: Transmission Electron Microscopy Analysis of Aerosol Particles Field Campaign Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buseck, Peter

2016-03-01

During two Intensive Operational Periods (IOP), we collected samples at 3-hour intervals for transmission electron microscopy analysis. The resulting transmission electron microscopy images and compositions were analyzed for the samples of interest. Further analysis will be done especially for the plume of interest. We found solid spherical organic particles from rebounded samples collected with Professor Scot Martin’s group (Harvard University). Approximately 30% of the rebounded particles at 95% relative humidity were spherical organic particles. Their sources and formation process are not known, but such spherical particles could be solid and will have heterogeneous chemical reactions. We observed many organic particlesmore » that are internally mixed with inorganic elements such as potassium and nitrogen. They are either homogeneously mixed or have inorganic cores with organic aerosol coatings. Samples collected from the Manaus, Brazil, pollution plume included many nano-size soot particles mixed with organic material and sulfate. Aerosol particles from clean periods included organic aerosol particles, sulfate, sea salt, dust, and primary biogenic aerosol particles. There was more dust, primary biogenic aerosol, and tar balls in samples taken during IOP1 than those taken during IOP2. Many dust particles were found between March 2 and 3.« less

SPRUCE S1 Bog Pretreatment Fungal Hyphae Carbon and Nitrogen Concentrations and Stable Isotope Composition from In-growth Cores, 2013-2014

DOE Data Explorer

Hofmockel, K. S. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Chen, J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Hobbie, E. A. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.

2014-02-01

This data set reports fungal hyphal carbon and nitrogen concentrations and δ13C, and δ15N data for samples obtained from in-growth cores in the S1 Bog. Hyphae were collected using 40 μm in-growth bags (10 cm × 10 cm) filled with sterile sand. Bags were incubated in the field in paired hummock and hollows at six locations in the bog. In hummocks, bags were inserted at +10 to 0 cm above the adjacent hollow and in both locations from 0 to -10 cm and -10 to -20 cm below the hollow surface

Isotopic compositions of (236)U and Pu isotopes in "black substances" collected from roadsides in Fukushima prefecture: fallout from the Fukushima Dai-ichi nuclear power plant accident.

PubMed

Sakaguchi, Aya; Steier, Peter; Takahashi, Yoshio; Yamamoto, Masayoshi

2014-04-01

Black-colored road dusts were collected in high-radiation areas in Fukushima Prefecture. Measurement of (236)U and Pu isotopes and (134,137)Cs in samples was performed to confirm whether refractory elements, such as U and Pu, from the fuel core were discharged and to ascertain the extent of fractionation between volatile and refractory elements. The concentrations of (134,137)Cs in all samples were exceptionally high, ranging from 0.43 to 17.7 MBq/kg, respectively. (239+240)Pu was detected at low levels, ranging from 0.15 to 1.14 Bq/kg, and with high (238)Pu/(239+240)Pu activity ratios of 1.64-2.64. (236)U was successfully determined in the range of (0.28 to 6.74) × 10(-4) Bq/kg. The observed activity ratios for (236)U/(239+240)Pu were in reasonable agreement with those calculated for the fuel core inventories, indicating that trace amounts of U from the fuel cores were released together with Pu isotopes but without large fractionation. The quantities of U and (239+240)Pu emitted to the atmosphere were estimated as 3.9 × 10(6) Bq (150 g) and 2.3 × 10(9) Bq (580 mg), respectively. With regard to U, this is the first report to give a quantitative estimation of the amount discharged. Appreciable fractionation between volatile and refractory radionuclides associated with the dispersal/deposition processes with distance from the Fukushima Dai-ichi Nuclear Power Plant was found.

Sampling in the Snow: High School Winter Field Experiences Provide Relevant, Real World Connections Between Scientific Practices and Disciplinary Core Ideas

NASA Astrophysics Data System (ADS)

Hanson, E. W.; Burakowski, E. A.

2014-12-01

For much of the northern United States, the months surrounding the winter solstice are times of increased darkness, low temperatures, and frozen landscapes. It's a time when many high school science educators, who otherwise would venture outside with their classes, hunker down and are wary of the outdoors. However, a plethora of learning opportunities lies just beyond the classroom. Working collaboratively, a high school science teacher and a snow scientist have developed multiple activities to engage students in the scientific process of collecting, analyzing and interpreting the winter world using snow data to (1) learn about the insulative properties of snow, and (2) to learn about the role of snow cover on winter climate through its reflective properties while participating in a volunteer network that collects snow depth, albedo (reflectivity), and density data. These outdoor field-based snow investigations incorporate Next Generation Science Standards (NGSS) and disciplinary core ideas, including ESS2.C: The roles of water in Earth's surface processes and ESS2.D: Weather and Climate. Additionally, the lesson plans presented address Common Core State Standards (CCSS) in Mathematics, including the creation and analysis of bar graphs and time series plots (CCSS.Math.HSS-ID.A.1) and xy scatter plots (CCSS.Math.HSS-ID.B.6). High school students participating in the 2013/2014 snow sampling season described their outdoor learning experience as "authentic" and "hands-on" as compared to traditional class indoors. They emphasized that learning outdoors was essential to their understanding of underlying content and concepts because they "learn through actual experience."

Chemical Characterization of Individual Particles and Residuals of Cloud Droplets and Ice Crystals Collected On Board Research Aircraft in the ISDAC 2008 Study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hiranuma, Naruki; Brooks, Sarah D.; Moffet, Ryan C.

2013-06-24

Although it has been shown that size of atmospheric particles has a direct correlation with their ability to act as cloud droplet and ice nuclei, the influence of composition of freshly emitted and aged particles in nucleation processes is poorly understood. In this work we combine data from field measurements of ice nucleation with chemical imaging of the sampled particles to link aerosol composition with ice nucleation ability. Field measurements and sampling were conducted during the Indirect and Semidirect Aerosols Campaign (ISDAC) over Barrow, Alaska, in the springtime of 2008. In-situ ice nucleation measurements were conducted using a Continuous Flowmore » Diffusion Chamber (CFDC). Measured number concentrations of ice nuclei (IN) varied from frequent values of 0.01 per liter to more than 10 per liter. Residuals of airborne droplets and ice crystals were collected through a counterflow virtual impactor (CVI). The compositions of individual atmospheric particles and the residuals were studied using Computer Controlled Scanning Electron Microscopy with Energy Dispersive X-ray analysis (CCSEM/EDX) and Scanning Transmission X-ray Microscopy coupled with Near Edge X-ray Absorption Fine Structure spectroscopy (STXM/NEXAFS). Chemical analysis of cloud particle residuals collected during an episode of high ice nucleation suggests that both size and composition may influence aerosol's ability to act as IN. The STXM/NEXAFS chemical composition maps of individual residuals have characteristic structures of either inorganic or black carbon cores coated by organic materials. In a separate flight, particle samples from a biomass burning plume were collected. Although it has previously been suggested that episodes of biomass burning contribute to increased numbers of highly effective ice nuclei, in this episode we observed that only a small fraction were effective ice nuclei. Most of the particles from the biomass plume episode were smaller in size and were composed of homogeneous organic material without identifiable cores.« less

Use of sediment source fingerprinting to assess the role of subsurface erosion in the supply of fine sediment in a degraded catchment in the Eastern Cape, South Africa.

PubMed

Manjoro, Munyaradzi; Rowntree, Kate; Kakembo, Vincent; Foster, Ian; Collins, Adrian L

2017-06-01

Sediment source fingerprinting has been successfully deployed to provide information on the surface and subsurface sources of sediment in many catchments around the world. However, there is still scope to re-examine some of the major assumptions of the technique with reference to the number of fingerprint properties used in the model, the number of model iterations and the potential uncertainties of using more than one sediment core collected from the same floodplain sink. We investigated the role of subsurface erosion in the supply of fine sediment to two sediment cores collected from a floodplain in a small degraded catchment in the Eastern Cape, South Africa. The results showed that increasing the number of individual fingerprint properties in the composite signature did not improve the model goodness-of-fit. This is still a much debated issue in sediment source fingerprinting. To test the goodness-of-fit further, the number of model repeat iterations was increased from 5000 to 30,000. However, this did not reduce uncertainty ranges in modelled source proportions nor improve the model goodness-of-fit. The estimated sediment source contributions were not consistent with the available published data on erosion processes in the study catchment. The temporal pattern of sediment source contributions predicted for the two sediment cores was very different despite the cores being collected in close proximity from the same floodplain. This highlights some of the potential limitations associated with using floodplain cores to reconstruct catchment erosion processes and associated sediment source contributions. For the source tracing approach in general, the findings here suggest the need for further investigations into uncertainties related to the number of fingerprint properties included in un-mixing models. The findings support the current widespread use of ≤5000 model repeat iterations for estimating the key sources of sediment samples. Copyright © 2016 Elsevier Ltd. All rights reserved.

Chicxulub Impact Crater and Yucatan Carbonate Platform - Stratigraphy and Petrography of PEMEX Borehole Cores

NASA Astrophysics Data System (ADS)

Gutierrez-Cirlos, A. G.; Perez-Drago, G.; Perez-Cruz, L.; Urrutia-Fucugauchi, J.

2008-12-01

Chicxulub impact crater is the best preserved of the three large multi-ring structures documented in the terrestrial record. Chicxulub, formed 65 Ma ago, is associated with the Cretaceous/Tertiary (K/T) boundary layer and the impact related to the organism extinctions and events marking the boundary. The crater is buried under Tertiary sediments in the Yucatan carbonate platform in the southern Gulf of Mexico. The structure was initially recognized from gravity and magnetic anomalies in the PEMEX exploration surveys of the northwestern Yucatan peninsula. The exploration program included eight deep boreholes completed from 1952 through the 1970s. The investigations showing Chicxulub as a large complex impact crater formed at the K/T boundary have relayed on the PEMEX decades-long exploration program. However, despite frequent use of PEMEX information and core samples, significant parts of the database and cores remain to be evaluated, analyzed and incorporated with results from recent efforts. Access to PEMEX Core Repository has permitted to study the cores and collect new samples from some of the boreholes. We analyzed cores from Yucatan-6, Chicxulub-1, Sacapuc-1, Ticul-1, Yucatan-1 and Yucatan-4 boreholes to make new detailed stratigraphic correlations and petrographic characterization, using information from PEMEX database and the recent studies. In C-1 cores, breccias show 4-8 cm clasts of fine grained altered melt dispersed in a medium to coarse grained matrix composed of pyroxene and feldspar with little macroscopic alteration. Clasts contain 0.2 to 0.1 cm fragments of silicate material (basement) that show variable degrees of digestion. Melt samples from C-1 N10 comes from interval 1,393-1,394 m, and show a fine-to-medium grained coherent microcrystalline groundmass. Melt and breccias in Y-6 extend from about 1,100 m to more than 1,400 m. Sequence is well sorted, with an apparent gradation in both the lithic and melt clasts. In this presentation we report on initial results from this new joint project for the carbonate sequences and impact lithologies.

Recovery and Lithologic Analysis of Sediment from Hole UT-GOM2-1-H002, Green Canyon 955, Northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Kinash, N.; Cook, A.; Sawyer, D.; Heber, R.

2017-12-01

In May 2017 the University of Texas led a drilling and pressure coring expedition in the northern Gulf of Mexico, UT-GOM2-01. The holes were located in Green Canyon Block 955, where the Gulf of Mexico Joint Industry Project Leg II identified an approximately 100m thick hydrate-filled course-grained levee unit in 2009. Two separate wells were drilled into this unit: Holes H002 and H005. In Hole H002, a cutting shoe drill bit was used to collect the pressure cores, and only 1 of the 8 cores collected was pressurized during recovery. The core recovery in Hole H002 was generally poor, about 34%, while the only pressurized core had 45% recovery. In Hole H005, a face bit was used during pressure coring where 13 cores were collected and 9 cores remained pressurized. Core recovery in Hole H005 was much higher, at about 75%. The type of bit was not the only difference between the holes, however. Drilling mud was used throughout the drilling and pressure coring of Hole H002, while only seawater was used during the first 80m of pressure cores collected in Hole H005. Herein we focus on lithologic analysis of Hole H002 with the goal of documenting and understanding core recovery in Hole H002 to compare with Hole H005. X-ray Computed Tomography (XCT) images were collected by Geotek on pressurized cores, mostly from Hole H005, and at Ohio State on unpressurized cores, mostly from Hole H002. The XCT images of unpressurized cores show minimal sedimentary structures and layering, unlike the XCT images acquired on the pressurized, hydrate-bearing cores. Only small sections of the unpressurized cores remained intact. The unpressurized cores appear to have two prominent facies: 1) silt that did not retain original sedimentary fabric and often was loose within the core barrel, and 2) dense mud sections with some sedimentary structures and layering present. On the XCT images, drilling mud appears to be concentrated on the sides of cores, but also appears in layers and fractures within intact core sections. On microscope images, the drilling mud also appears to saturate the pores in some silt intervals. Further analysis of the unpressurized cores is planned, including X-ray diffraction, grain size analysis and porosity measurements. These results will be compared to the pressurized cores to understand if further lithologic factors could have affected core recovery.

Environmental implications of the use of sulfidic back-bay sediments for dune reconstruction — Lessons learned post Hurricane Sandy

USGS Publications Warehouse

Plumlee, Geoffrey S.; Benzel, William M.; Hoefen, Todd M.; Hageman, Philip L.; Morman, Suzette A.; Reilly, Timothy J.; Adams, Monique; Berry, Cyrus J.; Fischer, Jeffrey; Fisher, Irene

2016-01-01

Some barrier-island dunes damaged or destroyed by Hurricane Sandy's storm surges in October 2012 have been reconstructed using sediments dredged from back bays. These sand-, clay-, and iron sulfide-rich sediments were used to make berm-like cores for the reconstructed dunes, which were then covered by beach sand. In November 2013, we sampled and analyzed partially weathered materials collected from the cores of reconstructed dunes. There are generally low levels of metal toxicants in the reconstructed dune materials. However oxidation of reactive iron sulfides by percolating rainwater produces acid-sulfate pore waters, which evaporate during dry periods to produce efflorescent gypsum and sodium jarosite salts. The results suggest use of sulfidic sediments in dune reconstruction has both drawbacks (e.g., potential to generate acid runoff from dune cores following rainfall, enhanced corrosion of steel bulwarks) and possible benefits (e.g., efflorescent salts may enhance structural integrity).

Radionuclide activities and metal concentrations in sediments of the Sebou Estuary, NW Morocco, following a flooding event.

PubMed

Laissaoui, A; Mas, J L; Hurtado, S; Ziad, N; Villa, M; Benmansour, M

2013-06-01

This study presents metal concentrations (Fe, Mg, Mn, Co, Cu, Zn, Pb, As, Sr and V) and radionuclide activities ((40)K, (137)Cs, (210)Pb, (226)Ra, (228)Ac, (234)Th and (212)Pb) in surface deposits and a sediment core from the Sebou Estuary, Northwest Morocco. Samples were collected in April 2009, about 2 months after a flooding event, and analysed using a well-type coaxial gamma-ray detector and inductively coupled plasma-quadrupole mass spectrometry. Activities of radionuclides and concentrations of almost all elements in surface samples displayed only moderate spatial variation, suggesting homogenous deposition of eroded local soil in response to intense precipitation. Excess (210)Pb displayed relatively constant activity throughout the sediment core, preventing dating and precluding determination of the historical accumulation rates of pollutants at the core site. Some elements showed non-systematic trends with depth and displayed local maxima and minima. Other elements presented relatively systematic concentration trends or relatively constant levels with discrete maxima and/or minima. Except for Mn, Sr and Cr, all metal concentrations in sediment were below levels typical of polluted systems, suggesting little human impact or losses of metals from sediment particles.

Intrinsic Conformational Preferences and Interactions in α-Synuclein Fibrils: Insights from Molecular Dynamics Simulations.

PubMed

Ilie, Ioana M; Nayar, Divya; den Otter, Wouter K; van der Vegt, Nico F A; Briels, Wim J

2018-06-12

Amyloid formation by the intrinsically disordered α-synuclein protein is the hallmark of Parkinson's disease. We present atomistic Molecular Dynamics simulations of the core of α-synuclein using enhanced sampling techniques to describe the conformational and binding free energy landscapes of fragments implicated in fibril stabilization. The theoretical framework is derived to combine the free energy profiles of the fragments into the reaction free energy of a protein binding to a fibril. Our study shows that individual fragments in solution have a propensity toward attaining non-β conformations, indicating that in a fibril β-strands are stabilized by interactions with other strands. We show that most dimers of hydrogen-bonded fragments are unstable in solution, while hydrogen bonding stabilizes the collective binding of five fragments to the end of a fibril. Hydrophobic effects make further contributions to the stability of fibrils. This study is the first of its kind where structural and binding preferences of the five major fragments of the hydrophobic core of α-synuclein have been investigated. This approach improves sampling of intrinsically disordered proteins, provides information on the binding mechanism between the core sequences of α-synuclein, and enables the parametrization of coarse grained models.

Complexity of nearshore strontium-to-calcium ratio variability in a core sample of the massive coral Siderastrea siderea obtained in Coral Bay, St. John, U.S. Virgin Islands

USGS Publications Warehouse

Reich, Christopher D.; Kuffner, Ilsa B.; Hickey, T. Don; Morrison, Jennifer M.; Flannery, Jennifer A.

2013-01-01

Strontium-to-calcium ratios (Sr/Ca) were measured on the skeletal matrix of a core sample from a colony of the massive coral Siderastrea siderea collected in Coral Bay, St. John, U.S. Virgin Islands. Strontium and calcium are incorporated into the coral skeleton during the precipitation of aragonite by the coral polyps and their ratio is highly temperature dependent. The robustness of this temperature dependence makes Sr/Ca a reliable proxy for sea surface temperature (SST). Details presented from the St. John S. siderea core indicate that terrestrial inputs of sediment and freshwater can disrupt the chemical balance and subsequently complicate the utility of Sr/Ca in reconstructing historical SST. An approximately 44-year-long record of Sr/Ca shows that an annual SST signal is recorded but with an increasing Sr/Ca trend from 1980 to present, which is likely the result of runoff from the mountainous terrain of St. John. The overwhelming influence of the terrestrial fingerprint on local seawater chemistry makes utilizing Sr/Ca as a SST proxy in nearshore environments very difficult.

Unlocking the Physiochemical Controls on Organic Carbon Dynamics from the Soil Pore- to Core-Scale

NASA Astrophysics Data System (ADS)

Smith, A. P.; Tfaily, M. M.; Bond-Lamberty, B. P.; Todd-Brown, K. E.; Bailey, V. L.

2015-12-01

The physical organization of soil includes pore networks of varying size and connectivity. These networks control microbial access to soil organic carbon (C) by spatially separating microorganisms and C by both distance and size exclusion. The extent to which this spatially isolated C is vulnerable to microbial transformation under hydrologically dynamic conditions is unknown, and limits our ability to predict the source and sink capacity of soils. We investigated the effects of shifting hydrologic connectivity and soil structure on greenhouse gas C emissions from surface soils collected from the Disney Wilderness Preserve (Florida, USA). We subjected intact soil cores and re-packed homogenized soil cores to simulated groundwater rise or precipitation, monitoring their CO2 and CH4 emissions over 24 hours. Soil pore water was then extracted from each core using different suctions to sample water retained by pore throats of different sizes and then characterized by Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. Greater respiration rates were observed from homogenized cores compared to intact cores, and from soils wet from below, in which the wetting front is driven by capillary forces, filling fine pores first. This suggests that C located in fine pores may turn over via diffusion processes that lead to the colocation of this C with other resources and microorganisms. Both the complexity and concentration of soluble-C increased with decreasing pore size domains. Pore water extracted from homogenized cores had greater C concentrations than from intact cores, with the greatest concentrations in pore waters sampled from very fine pores, highlighting the importance of soil structure in physically protecting C. These results suggest that the spatial separation of decomposers from C is a key mechanism stabilizing C in these soils. Further research is ongoing to accurately represent this protection mechanism, and the conditions under which it breaks down, in new and improved Earth system models.

Mars Technology Rover with Arm-Mounted Percussive Coring Tool, Microimager, and Sample-Handling Encapsulation Containerization Subsystem

NASA Technical Reports Server (NTRS)

Younse, Paulo J.; Dicicco, Matthew A.; Morgan, Albert R.

2012-01-01

A report describes the PLuto (programmable logic) Mars Technology Rover, a mid-sized FIDO (field integrated design and operations) class rover with six fully drivable and steerable cleated wheels, a rocker-bogey suspension, a pan-tilt mast with panorama and navigation stereo camera pairs, forward and rear stereo hazcam pairs, internal avionics with motor drivers and CPU, and a 5-degrees-of-freedom robotic arm. The technology rover was integrated with an arm-mounted percussive coring tool, microimager, and sample handling encapsulation containerization subsystem (SHEC). The turret of the arm contains a percussive coring drill and microimager. The SHEC sample caching system mounted to the rover body contains coring bits, sample tubes, and sample plugs. The coring activities performed in the field provide valuable data on drilling conditions for NASA tasks developing and studying coring technology. Caching of samples using the SHEC system provide insight to NASA tasks investigating techniques to store core samples in the future.

Temporal changes in lithology and radiochemistry from the back-barrier environments along the Chandeleur Islands, Louisiana: March 2012-July 2013

USGS Publications Warehouse

Marot, Marci E.; Adams, C. Scott; Richwine, Kathryn A.; Smith, Christopher G.; Osterman, Lisa E.; Bernier, Julie C.

2014-01-01

Scientists from the U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center conducted a time-series collection of shallow sediment cores from the back-barrier environments along the Chandeleur Islands, Louisiana from March 2012 through July 2013. The sampling efforts were part of a larger USGS study to evaluate effects on the geomorphology of the Chandeleur Islands following the construction of an artificial sand berm to reduce oil transport onto federally managed lands. The objective of this study was to evaluate the response of the back-barrier tidal and wetland environments to the berm. This report serves as an archive for sedimentological, radiochemical, and microbiological data derived from the sediment cores. Data are available for a time-series of four sampling periods: March 2012; July 2012; September 2012; and July 2013. Downloadable data are available as Excel spreadsheets and as JPEG files. Additional files include: ArcGIS shapefiles of the sampling sites, detailed results of sediment grain size analyses, and formal Federal Geographic Data Committee metadata.

Isotopic composition of ice cores and meltwater from upper fremont glacier and Galena Creek rock glacier, Wyoming

USGS Publications Warehouse

DeWayne, Cecil L.; Green, J.R.; Vogt, S.; Michel, R.; Cottrell, G.

1998-01-01

Meltwater runoff from glaciers can result from various sources, including recent precipitation and melted glacial ice. Determining the origin of the meltwater from glaciers through isotopic analysis can provide information about such things as the character and distribution of ablation on glaciers. A 9.4 m ice core and meltwater were collected in 1995 and 1996 at the glacigenic Galena Creek rock glacier in Wyoming's Absaroka Mountains. Measurements of chlorine-36 (36Cl), tritium (3H), sulphur-35 (35S), and delta oxygen-18 (??18O) were compared to similar measurements from an ice core taken from the Upper Fremont Glacier in the Wind River Range of Wyoming collected in 1991-95. Meltwater samples from three sites on the rock glacier yielded 36Cl concentrations that ranged from 2.1 ?? 1.0 X 106 to 5.8??0.3 X 106 atoms/l. The ice-core 36Cl concentrations from Galena Creek ranged from 3.4??0.3 X 105 to 1.0??0.1 X 106 atoms/l. Analysis of an ice core from the Upper Fremont Glacier yielded 36Cl concentrations of 1.2??0.2 X 106 and 5.2??0.2 X 106 atoms/l for pre- 1940 ice and between 2 X 106 and 3 X 106 atoms/l for post-1980 ice. Purdue's PRIME Lab analyzed the ice from the Upper Fremont Glacier. The highest concentration of 36Cl in the ice was 77 ?? 2 X 106 atoms/l and was deposited during the peak of atmospheric nuclear weapons testing in the late 1950s. This is an order of magnitude greater than the largest measured concentration from both the Upper Fremont Glacier ice core that was not affected by weapons testing fallout and the ice core collected from the Galena Creek rock glacier. Tritium concentrations from the rock glacier ranged from 9.2??0.6 to 13.2??0.8 tritium units (TU) in the meltwater to -1.3??1.3 TU in the ice core. Concentrations of 3H in the Upper Fremont Glacier ice core ranged from 0 TU in the ice older than 50 years to 6-12 TU in the ice deposited in the last 10 years. The maximum 3H concentration in ice from the Upper Fremont Glacier deposited in the early 1960s during peak weapons testing fallout for this isotope was 360 TU. One meltwater sample from the rock glacier was analyzed for 35S with a measured concentration of 5.4??1.0 millibecquerel per liter (mBeq/l). Modern precipitation in the Rocky Mountains contains 35S from 10 to 40 mBeq/L. The ??18O results in meltwater from the Galena Creek rock glacier (-17.40??0.1 to -17.98??0.1 per mil) are similar to results for modern precipitation in the Rocky Mountains. Comparison of these isotopic concentrations from the two glaciers suggest that the meltwater at the Galena Creek site is composed mostly of melted snow and rain that percolates through the rock debris that covers the glacier. Additionally, this water from the rock debris is much younger (less than two years) than the reported age of about 2000 years for the subsurface ice at the mid-glacier coring site. Thus the meltwater from the Galena Creek rock glacier is composed primarily of melted surface snow and rain water rather than melted glacier ice, supporting previous estimates of slow ablation rates beneath the surface debris of the rock glacier.

Phosphorus fractionation and distribution in sediments from wetlands and canals of a water conservation area in the Florida Everglades

Treesearch

Qingren Wang; Yuncong Li; Ying Ouyang

2011-01-01

Phosphorus (P) fractionation and distribution in sediments are of great concern in the Florida Everglades ecosystem because potential eutrophication of surface waters usually results from P external loading and stability. Intact core sediment samples were collected to a depth of 35 cm from wetlands and canals across Water Conservation Area 3 (WCA‐3) of the Florida...

Current State and Development Trends of Education Policy Research in China in the Last Decade (2004-2013): A Statistical Analysis of Papers from Eight Core Chinese Journals

ERIC Educational Resources Information Center

Ling, Guo

2017-01-01

The author conducted sampling and statistical analysis of papers on education policy research collected by the China National Knowledge Infrastructure in the period from the years 2004--2013. Under the current state of education policy research in China, the number of papers correlates positively with the year; the papers are concentrated in…

Sediment data collected in 2014 and 2015 from around Breton and Gosier Islands, Breton National Wildlife Refuge, Louisiana

USGS Publications Warehouse

Bernier, Julie C.; Kelso, Kyle W.; Tuten, Thomas M.; Stalk, Chelsea A.; Flocks, James G.

2017-03-08

Breton Island, located at the southern end of the Chandeleur Islands, supports one of Louisiana’s largest historical brown pelican (Pelecanus occidentalis) nesting colonies. Although the brown pelican was delisted as an endangered species in 2009, nesting areas are threatened by continued land loss and are extremely vulnerable to storm impacts. The U.S. Fish and Wildlife Service proposed to restore Breton Island to pre-Hurricane Katrina conditions through rebuilding the shoreface, dune, and back-barrier marsh environments. Prior to restoration, scientists from the U.S. Geological Survey’s (USGS) St. Petersburg Coastal and Marine Science Center Geologic and Morphologic Evolution of Coastal Margins project collected high-resolution geophysical (topography, bathymetry, and sub-bottom profiles) and sedimentologic data from around Breton Island to characterize the geologic framework of the island platform, nearshore, and shelf environments. These data will be used to characterize the geologic framework around Breton Island, identify potential borrow areas for restoration efforts, quantify seafloor change, and provide information for sediment transport and morphologic change models to assess island response to restoration and natural processes.This report, along with the accompanying USGS data release, serves as an archive of sediment data from vibracores, push cores, and submerged grab samples collected from around Breton and Gosier Islands, Louisiana, during two surveys conducted in July 2014 and January 2015 (USGS Field Activity Numbers 2014–314–FA and 2014–336–FA, respectively). Sedimentologic and stratigraphic metrics (for example, sediment texture or unit thicknesses) derived from these data can be used to ground-truth the geophysical data and characterize potential sand resources or can be incorporated into sediment transport or morphologic change models. Data products, including sample location tables, descriptive core logs, core photographs and x-radiographs, results of sediment grain-size analyses, and geographic information system data files with accompanying formal Federal Geographic Data Committee metadata can be downloaded from the accompanying data release.

Hydrogeologic and water-quality data for the main site, Naval Surface Warfare Center, Dahlgren Laboratory, Dahlgren, Virginia

USGS Publications Warehouse

Bell, Clifton F.; Bolles, Thomas P.; Harlow, George E.

1994-01-01

Hydrogeologic and water-quality data were collected at the Naval Surface Warfare Center, Dahlgren Laboratory at Dahlgren, Virginia, as part of a hydrogeologic assessment of the shallow aquifer system begun in 1992. The U.S. Geological Survey conducted this study to provide the Navy with hydrogeologic data to meet the requirements of a Spill Contingency Plan. This report describes the ground-water observation-well network, hydro- geologic, and water-quality data collected between August 1992 and September 1993. The report includes a description of the locations and con- struction of 35 observation wells on the Main Site. Hydrologic data include lithologic core samples, geophysical logs, and vertical hydraulic conductivity measurements of selected core intervals. Hydrologic data include synoptic and hourly measurements of ground-water levels, observation-well slug tests to determine horizontal hydraulic conductivity, and tide data. Water-quality data include analyses of major dissolved constituents in ground water and surface water.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, D. H.; Reigel, M. M.

A full-scale formed core sampler was designed and functionally tested for use in the Saltstone Disposal Facility (SDF). Savannah River National Laboratory (SRNL) was requested to compare properties of the formed core samples and core drilled samples taken from adjacent areas in the full-scale sampler. While several physical properties were evaluated, the primary property of interest was hydraulic conductivity. Differences in hydraulic conductivity between the samples from the formed core sampler and those representing the bulk material were noted with respect to the initial handling and storage of the samples. Due to testing conditions, the site port samples were exposedmore » to uncontrolled temperature and humidity conditions prior to testing whereas the formed core samples were kept in sealed containers with minimal exposure to an uncontrolled environment prior to testing. Based on the results of the testing, no significant differences in porosity or density were found between the formed core samples and those representing the bulk material in the test stand.« less

GANSEKI: JAMSTEC Deep Seafloor Rock Sample Database Emerging to the New Phase

NASA Astrophysics Data System (ADS)

Tomiyama, T.; Ichiyama, Y.; Horikawa, H.; Sato, Y.; Soma, S.; Hanafusa, Y.

2013-12-01

Japan Agency for Marine-Earth Science and Technology (JAMSTEC) collects a lot of substantial samples as well as various geophysical data using its research vessels and submersibles. These samples and data, which are obtained by spending large amounts of human and physical resources, are precious wealth of the world scientific community. For the better use of these samples and data, it is important that they are utilized not only for initial purpose of each cruse but also for other general scientific and educational purposes of second-hand users. Based on the JAMSTEC data and sample handling policies [1], JAMSTEC has systematically stored samples and data obtained during research cruises, and provided them to domestic/foreign activities on research, education, and public relation. Being highly valued for second-hand usability, deep seafloor rock samples are one of the most important types of samples obtained by JAMSTEC, as oceanic biological samples and sediment core samples are. Rock samples can be utilized for natural history sciences and other various purposes; some of these purposes are connected to socially important issues such as earthquake mechanisms and mineral resource developments. Researchers and educators can access to JAMSTEC rock samples and associated data through 'GANSEKI [2]', the JAMSTEC Deep Seafloor Rock Sample Database. GANSEKI was established on the Internet in 2006 and its contents and functions have been continuously enriched and upgraded since then. GANSEKI currently provides 19 thousands of sample metadata, 9 thousands of collection inventory data and 18 thousands of geochemical data. Most of these samples are recovered from the North-western Pacific Ocean, although samples from other area are also included. The major update of GANSEKI held in May 2013 involved a replacement of database core system and a redesign of user interface. In the new GANSEKI, users can select samples easily and precisely using multi-index search, numerical constraints on geochemical data and thumbnail browsing of sample and thin-section photos. 'MyList' function allows users to organize, compare and download the data of selected samples. To develop a close network among online databases, the new GANSEKI allows multiple URL entries for individual samples. Now the curatorial staffs are working for maintaining references to other JAMSTEC databases such as 'DARWIN [3]' and 'J-EDI [4]'.

Thermo-responsive polymer tethered metal-organic framework core-shell magnetic microspheres for magnetic solid-phase extraction of alkylphenols from environmental water samples.

PubMed

Jia, Yuqian; Su, Hao; Wong, Y-L Elaine; Chen, Xiangfeng; Dominic Chan, T-W

2016-07-22

In this work, the thermo-responsive polymer PNIPAM tethered to Fe3O4@SiO2@MOF core-shell magnetic microspheres was first synthesized by a surface-selective post-synthetic strategy and underwent highly efficient magnetic solid-phase extraction (MSPE) of alkylphenols from aqueous samples. Alkylphenols, including 4-tert-octylphenol (OP) and 4-n-nonylphenol (NP), were selected as target compounds. The sample quantification was carried out using LC-MS/MS in multiple reaction monitor (MRM) mode. Under optimal working conditions, the developed method showed good linearity in the range of 5-1000ngL(-1), a low limit of detection (1.5ngL(-1)), and good repeatability (relative standard deviation, <8%, n=5) for NP and OP. Owning to the hydrophilic/hydrophobic switchable properties of the nanocomposite, high recoveries (78.7-104.3%) of alkylphenols were obtained under different extraction conditions. The levels of OP and NP in environmental samples collected from local river, lake and pond waters were analyzed using the developed method. It was believed that the synthesized material with the thermo-responsive coating, large surface areas and magnetic properties should have great potential in the extraction and removal of alkylphenols from environmental samples. Copyright © 2016 Elsevier B.V. All rights reserved.

Helium isotopes in matrix pore fluids from SAFOD drill core samples suggest mantle fluids cannot be responsible for fault weakening

NASA Astrophysics Data System (ADS)

Ali, S.; Stute, M.; Torgersen, T.; Winckler, G.

2008-12-01

To quantify fluid flow in the San Andreas Fault (SAF) (and since direct fracture fluid sampling of the fault zone was not available), we have adapted a method to extract rare gases from matrix fluids of whole rocks by diffusion. Helium was measured on drill core samples obtained from 3054 m (Pacific Plate) to 3990 m (North American Plate) through the San Andreas Fault Zone (SAFZ) ~3300 m during SAFOD Phases I (2004), II (2005), III (2007). Samples were typically collected as 2.54 cm diameter subcores drilled into the ends of the cores, or from the core catcher and drillcore fragments within <2hr after core recovery. The samples were placed into ultra high vacuum stainless steel containers, flushed with ultra high purity nitrogen and immediately evacuated. Helium isotopes of the extracted matrix pore fluids and the solid matrix were determined by mass spectrometery at LDEO. Matrix porefluid 3He/4He ratios are ~0.4 - 0.5xRa (Ra: atmospheric 3He/4He = 1.384 x 10-6) in the Pacific Plate, increasing toward the SAFZ, while pore fluids in the North American Plate have a 3He/4He range of 0.7-0.9Ra, increasing away from the SAFZ (consistent with results from mud gas samples (Wiersberg and Erzinger, 2007) and direct fluid samples (Kennedy et al., 2007)). Helium isotope ratios of the solid matrix are less than 0.06Ra across the SAF in samples from both the North American and the Pacific plates, thereby excluding the host matrix as source for the enhanced isotopic signature. If the system is assumed to be in steady state, then the flux of mantle helium must be from the North American Plate to the Pacific plate. The steeper gradient in the Pacific Plate relative to the North American plate is consistent with a porosity corrected effective diffusivity. The source for this mantle helium in the North American Plate is likely related to a low crustal conductivity zone identified by magnetotelluric signals (Becken et al., 2008) that provides a channel for transport of mantle helium within brittle crust under high strain rates (Kennedy et al., 2007). The helium isotope gradients suggest that fault weakening by mantle-derived fluid pressure is unlikely. More likely, mantle fluids "bleed" into the North American plate below seismogenic depths and are transported across the fault by nonseismic, diffusive processes.

Characterisation of lubricin in synovial fluid from horses with osteoarthritis.

PubMed

Svala, E; Jin, C; Rüetschi, U; Ekman, S; Lindahl, A; Karlsson, N G; Skiöldebrand, E

2017-01-01

The glycoprotein lubricin contributes to the boundary lubrication of the articular cartilage surface. The early events of osteoarthritis involve the superficial layer where lubricin is synthesised. To characterise the glycosylation profile of lubricin in synovial fluid from horses with osteoarthritis and study secretion and degradation of lubricin in an in vitro inflammation cartilage model. In vitro study. Synovial fluid samples collected from horses with joints with normal articular cartilage and structural osteoarthritic lesions; with and without osteochondral fragments, were analysed for the lubricin glycosylation profiles. Articular cartilage explants were stimulated with or without interleukin-1β for 25 days. Media samples collected at 3-day intervals were analysed by quantitative proteomics, western blot and enzyme-linked immunosorbent assay. O-glycosylation profiles in synovial fluid revealed both Core 1 and 2 O-glycans, with Core 1 O-glycans predominating. Synovial fluid from normal joints (49.5 ± 1.9%) contained significantly lower amounts of monosialylated Core 1 O-glycans compared with joints with osteoarthritis (53.8 ± 7.8%, P = 0.03) or joints with osteochondral fragments (57.3 ± 8.8%, P = 0.001). Additionally, synovial fluid from normal joints (26.7 ± 6.7%) showed higher amounts of disialylated Core 1 O-glycan than from joints with osteochondral fragments (21.2 ± 4.9%, P = 0.03). A C-terminal proteolytic cleavage site in lubricin was found in synovial fluid from normal and osteochondral fragment joints and in media from interleukin-1β stimulated and unstimulated articular cartilage explants. This is the first demonstration of a change in the glycosylation profile of lubricin in synovial fluid from diseased equine joints compared with that from normal joints. We demonstrate an identical proteolytic cleavage site of lubricin both in vitro and in vivo. The reduced sialation of lubricin in synovial fluid from diseased joints may affect the boundary lubricating ability of the superficial layer of articular cartilage and could be one of the early events in the progression of osteoarthritis. © 2015 EVJ Ltd.

International Collaboration in Data Management for Scientific Ocean Drilling: Preserving Legacy Data While Implementing New Requirements.

NASA Astrophysics Data System (ADS)

Rack, F. R.

2005-12-01

The Integrated Ocean Drilling Program (IODP: 2003-2013 initial phase) is the successor to the Deep Sea Drilling Project (DSDP: 1968-1983) and the Ocean Drilling Program (ODP: 1985-2003). These earlier scientific drilling programs amassed collections of sediment and rock cores (over 300 kilometers stored in four repositories) and data organized in distributed databases and in print or electronic publications. International members of the IODP have established, through memoranda, the right to have access to: (1) all data, samples, scientific and technical results, all engineering plans, data or other information produced under contract to the program; and, (2) all data from geophysical and other site surveys performed in support of the program which are used for drilling planning. The challenge that faces the individual platform operators and management of IODP is to find the right balance and appropriate synergies among the needs, expectations and requirements of stakeholders. The evolving model for IODP database services consists of the management and integration of data collected onboard the various IODP platforms (including downhole logging and syn-cruise site survey information), legacy data from DSDP and ODP, data derived from post-cruise research and publications, and other IODP-relevant information types, to form a common, program-wide IODP information system (e.g., IODP Portal) which will be accessible to both researchers and the public. The JANUS relational database of ODP was introduced in 1997 and the bulk of ODP shipboard data has been migrated into this system, which is comprised of a relational data model consisting of over 450 tables. The JANUS database includes paleontological, lithostratigraphic, chemical, physical, sedimentological, and geophysical data from a global distribution of sites. For ODP Legs 100 through 210, and including IODP Expeditions 301 through 308, JANUS has been used to store data from 233,835 meters of core recovered, which are comprised of 38,039 cores, with 202,281 core sections stored in repositories, which have resulted in the taking of 2,299,180 samples for scientists and other users (http://iodp.tamu.edu/janusweb/general/dbtable.cgi). JANUS and other IODP databases are viewed as components of an evolving distributed network of databases, supported by metadata catalogs and middleware with XML workflows, that are intended to provide access to DSDP/ODP/IODP cores and sample-based data as well as other distributed geoscience data collections (e.g., CHRONOS, PetDB, SedDB). These data resources can be explored through the use of emerging data visualization environments, such as GeoWall, CoreWall (http://(www.evl.uic.edu/cavern/corewall), a multi-screen display for viewing cores and related data, GeoWall-2 and LambdaVision, a very-high resolution, networked environment for data exploration and visualization, and others. The U.S Implementing Organization (USIO) for the IODP, also known as the JOI Alliance, is a partnership between Joint Oceanographic Institutions (JOI), Texas A&M University, and Lamont-Doherty Earth Observatory of Columbia University. JOI is a consortium of 20 premier oceanographic research institutions that serves the U.S. scientific community by leading large-scale, global research programs in scientific ocean drilling and ocean observing. For more than 25 years, JOI has helped facilitate discovery and advance global understanding of the Earth and its oceans through excellence in program management.

Questa baseline and premining ground-water quality investigation. 8. Lake-sediment geochemical record from 1960 to 2002, Eagle Rock and Fawn Lakes, Taos County, New Mexico

USGS Publications Warehouse

Church, S.E.; Fey, D.L.; Marot, M.E.

2005-01-01

Geochemical studies of lake sediment from Eagle Rock Lake and upper Fawn Lake were conducted to evaluate the effect of mining at the Molycorp Questa porphyry molybdenum deposit located immediately north of the Red River. Two cores were taken, one from each lake near the outlet where the sediment was thinnest, and they were sampled at 1-cm intervals to provide geochemical data at less than 1-year resolution. Samples from the core intervals were digested and analyzed for 34 elements using ICP-AES (inductively coupled plasma-atomic emission spectrometry). The activity of 137Cs has been used to establish the beginning of sedimentation in the two lakes. Correlation of the geochemistry of heavy-mineral suites in the cores from both Fawn and Eagle Rock Lakes has been used to develop a sedimentation model to date the intervals sampled. The core from upper Fawn Lake, located upstream of the deposit, provided an annual sedimentary record of the geochemical baseline for material being transported in the Red River, whereas the core from Eagle Rock Lake, located downstream of the deposit, provided an annual record of the effect of mining at the Questa mine on the sediment in the Red River. Abrupt changes in the concentrations of many lithophile and deposit-related metals occur in the middle of the Eagle Rock Lake core, which we correlate with the major flood-of-record recorded at the Questa gage at Eagle Rock Lake in 1979. Sediment from the Red River collected at low flow in 2002 is a poor match for the geochemical data from the sediment core in Eagle Rock Lake. The change in sediment geochemistry in Eagle Rock Lake in the post-1979 interval is dramatic and requires that a new source of sediment be identified that has substantially different geochemistry from that in the pre-1979 core interval. Loss of mill tailings from pipeline breaks are most likely responsible for some of the spikes in trace-element concentrations in the Eagle Rock Lake core. Enrichment of Al2O3, Cu, and Zn occurred as a result of chemical precipitation of these metals from ground water upstream in the Red River. Comparisons of the geochemistry of the post-1979 sediment core with both mine wastes and with premining sediment from the vicinity of the Questa mine indicate that both are possible sources for this new component of sediment. Existing data have not resolved this enigma.

Combined optical coherence tomography and hyper-spectral imaging using a double clad fiber coupler

NASA Astrophysics Data System (ADS)

Guay-Lord, Robin; Lurie, Kristen L.; Attendu, Xavier; Mageau, Lucas; Godbout, Nicolas; Ellerbee Bowden, Audrey K.; Strupler, Mathias; Boudoux, Caroline

2016-03-01

This proceedings shows the combination of Optical Coherence Tomography (OCT) and Hyper-Spectral Imaging (HSI) using a double-clad optical fiber. The single mode core of the fiber is used to transmit OCT signals, while the cladding, with its large collection area, provides an efficient way to capture the reflectance spectrum of the sample. The combination of both methods enables three-dimensional acquisition of sample morphology with OCT, enhanced by the molecular information contained in its hyper-spectral image. We believe that the combination of these techniques could result in endoscopes with enhanced tissue identification capability.

Associating mapping of stigma characteristics using the USDA rice core collection

USDA-ARS?s Scientific Manuscript database

A mini-core from the USDA rice core collection was phenotyped for nine traits of stigma and spikelet and genotyped with 109 DNA markers. Marker-trait association mapping was used to identify the regions associated with the nine traits. Resulting associations were adjusted using false discovery rate ...

Results of R/V Yaquina cruise YALOC-74, Leg 3: seabed disposal program, North Pacific study area MPG-2, 33$sup 0$20'N, 151$sup 0$00'W, November 30--December 21, 1974

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heath, G R

1975-07-01

During 10 days in the vicinity of 33$sup 0$20'N, 151$sup 0$00'W (MPG-2 area), three near-bottom current meters were deployed, the bathymetry and subbottom acoustic structure of the surrounding seafloor were determined, and sediment cores were collected for studies of artificial radionuclide distribution, geotechnical properties, geochemical properties, and to identify the character of shallow acoustic reflectors. Large volume water samples for artificial radionuclide studies and suspended sediment were also collected. These samples and data will supplement earlier material to be used in the evaluation of the central North Pacific as a potential site for the ultimate disposal of high-level reactor wastes.more » (auth)« less

Ancient deep-sea sponge grounds on the Flemish Cap and Grand Bank, northwest Atlantic.

PubMed

Murillo, F J; Kenchington, E; Lawson, J M; Li, G; Piper, D J W

Recent studies on deep-sea sponges have focused on mapping contemporary distributions while little work has been done to map historical distributions; historical distributions can provide valuable information on the time frame over which species have co-evolved and may provide insight into the reasons for their persistence or decline. Members of the sponge family Geodiidae are dominant members of deep-sea sponge assemblages in the northwestern Atlantic. They possess unique spicules called sterrasters, which undergo little transport in sediment and can therefore indicate the Geodiidae sponge historical presence when found in sediment cores. This study focuses on the slopes of Flemish Cap and Grand Bank, important fishing grounds off the coast of Newfoundland, Canada, in international waters. Sediment cores collected in 2009 and 2010 were visually inspected for sponge spicules. Cores containing spicules were sub-sampled and examined under a light microscope for the presence of sterrasters. These cores were also dated using X-radiographs and grouped into five time categories based on known sediment horizons, ranging from 17,000 years BP to the present. Chronological groupings identified Geodiidae sponges in four persistent sponge grounds. The oldest sterrasters were concentrated in the eastern region of the Flemish Cap and on the southeastern slope of the Grand Bank. Opportunistic sampling of a long core in the southeastern region of the Flemish Cap showed the continuous presence of sponge spicules to more than 130 ka BP. Our results indicate that the geodiids underwent a significant range expansion following deglaciation, and support a contemporary distribution that is not shaped by recent fishing activity.

Oxygen and hydrogen stable isotope content in daily-collected precipitation samples at Dome C, East Antarctica

NASA Astrophysics Data System (ADS)

Dreossi, Giuliano; Stenni, Barbara; Del Guasta, Massimo; Bonazza, Mattia; Grigioni, Paolo; Karlicek, Daniele; Mognato, Riccardo; Scarchilli, Claudio; Turchetti, Filippo; Zannoni, Daniele

2016-04-01

Antarctic ice cores allow to obtain exceptional past climate records, thanks to their water stable isotope content, which provides integrated tracers of the atmospheric water cycle and local climate. Low accumulation sites of the East Antarctic plateau provide the oldest ice core records, with the record-breaking EPICA Dome C drilling covering the last eight climate cycles. However, the isotope-temperature relationship, commonly used to derive the temperature, may be characterized by significant geographical and temporal variations. Moreover, post-depositional effects may further complicate the climate interpretation. A continuous series of precipitation data is needed in order to gain a better understanding of the factors affecting the water stable isotopes in Antarctic precipitation at a specific site. In this study, we use the first and so-far only multi-year series of daily precipitation sampling and isotope measurements from the French-Italian Concordia Station, located at Dome C in East Antarctica (75°06'S 123°21'E; elevation: 3233 m a.s.l.; mean annual temperature: -54.5°C; snow accumulation rate: 25 kg m-2 yr-1), where the oldest deep Antarctic ice core has been retrieved. Surface air temperature data have been provided by the US automatic weather station (AWS), placed 1.5 km away from the base, while tropospheric temperature profiles are obtained by means of a radiosonde, launched once per day by the IPEV/Italian Antarctic Meteo-climatological Observatory. The new dataset also enables us for the first time to study the isotope-temperature relationship distinguishing between different types of precipitation, namely diamond dust, hoar frost and snowfall, identified by the observations carried out by the winter-over personnel collecting the snow samples. Here we present the complete data series of water stable isotopes in precipitation at Dome C spanning the time period from 2008 to 2014, in the framework of the PNRA PRE-REC project.

Diatom paleoecology Pass Key core 37, Everglades National Park, Florida Bay

USGS Publications Warehouse

Pyle, Laura; Cooper, S.R.; Huvane, J.K.

1998-01-01

During the 20th century, there have been large-scale anthropogenic modifications to the South Florida ecosystem. The effects of these changes on Florida Bay and its biological communities are currently of political and scientific interest. This study is part of a larger effort to reconstruct the history of environmental changes in the bay, using paleoecological techniques. We are using diatom indicators preserved in Florida Bay sediments to infer long-term water quality, productivity, nutrient, and salinity changes. We are also obtaining information concerning the natural variability of the ecosystem. Diatoms are microscopic algae, the remains of which are generally well preserved in sediments, and their distributions are closely linked to water quality. Diatoms were extracted from a 70-cm sediment core collected from the Pass Key mudbank of Florida Bay by the U.S. Geological Survey. Between 300-500 diatom valves from each of 15 core samples were identified and counted. Estimates of absolute abundance, species richness, Shannon-Wiener diversity, and centric:pennate ratios were calculated for each sample that was counted. Information on the ecology of the diatom species is presented, and changes in diatom community composition are evaluated. Samples contained an average of four million diatom valves per gram of sediment. Major changes in the diatom community are evident down core. These include increases in the percent abundance of marine diatoms in the time period represented by the core, probably the result of increasing salinity at Pass Key. Benthic diatoms become less abundant in the top half of the core. This may be related to a number of factors including the die-off of sea grass beds or increased turbidity of the water column. Once the chronology of the Pass Key core 37 is established, these down-core changes can be related to historical events and compared with other indicators in the sedimentary record that are currently being investigated by U.S Geological Survey researchers. This report is preliminary and has not been reviewed for conformity with U.S. Geological Survey editorial standards or with the North American Stratigraphic Code. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

Character of High Temperature Mylonitic Shear Zones Associated with Oceanic Detachment Faults at the Ultra-Slow Mid-Cayman Rise

NASA Astrophysics Data System (ADS)

Marr, C.; John, B. E.; Cheadle, M. J.; German, C. R.

2014-12-01

Two well-preserved core complexes at the Mid-Cayman Rise (MCR), Mt Dent and Mt Hudson, provide an opportunity to examine the deformation history and rheology of detachment faults at an ultra-slow spreading ridge. Samples from the CAYTROUGH (1976-77) project and the Nautilus NA034 cruise (2013) were selected for detailed petrographic and microstructural study. Surface samples from Mt. Dent (near the center of the MCR) provide insight into lateral variation in footwall rock type and deformation history across a core complex in both the across and down dip directions. In contrast, sampling of Mt. Hudson (SE corner of the MCR) focuses on a high-angle, crosscutting normal fault scarp, which provides a cross section of the detachment fault system. Sampling across Mt Dent reveals that the footwall is composed of heterogeneously-distributed gabbro (47%) and peridotite (20%) with basaltic cover (33%) dominating the top of the core complex. Sampling of Mt Hudson is restricted to the normal fault scarp cutting the core complex and suggests the interior is dominated by gabbro (85% gabbro, 11% peridotite, 4% basalt). At Mt. Dent, peridotite is exposed within ~4km of the breakaway indicating that the Mt. Dent detachment does not cut Penrose-style oceanic crust. The sample set provides evidence of a full down-temperature sequence of detachment related-fault rocks, from possible granulite and clear amphibolite mylonitizatization to prehnite-pumpellyite brittle deformation. Both detachments show low-temperature brittle deformation overprinting higher temperature plastic fabrics. Fe-Ti oxide gabbro mylonites dominate the sample set, and plastic deformation of plagioclase is recorded in samples collected as near as ~4km from the inferred breakaway along the southern flank of Mt. Dent, suggesting the brittle-plastic transition was initially at ~3km depth. Recovered samples suggest strain associated with both detachment systems is localized into discrete mylonitic shear zones (~1-10cm thick), implying that the plastic portion of the fault consists of a broad zone of thin, anastomosing shear zones. Concentrations of Ti-rich magmatic hornblende and interstitial Fe-Ti oxides in the high strain horizons are consistent with the lowermost part of the fault(s) localizing in the margins of the mush zone of a shallow magma chamber.

Method and apparatus utilizing ionizing and microwave radiation for saturation determination of water, oil and a gas in a core sample

DOEpatents

Maerefat, Nicida L.; Parmeswar, Ravi; Brinkmeyer, Alan D.; Honarpour, Mehdi

1994-01-01

A system for determining the relative permeabilities of gas, water and oil in a core sample has a microwave emitter/detector subsystem and an X-ray emitter/detector subsystem. A core holder positions the core sample between microwave absorbers which prevent diffracted microwaves from reaching a microwave detector where they would reduce the signal-to-noise ratio of the microwave measurements. The microwave emitter/detector subsystem and the X-ray emitter/detector subsystem each have linear calibration characteristics, allowing one subsystem to be calibrated with respect to the other subsystem. The dynamic range of microwave measurements is extended through the use of adjustable attenuators. This also facilitates the use of core samples with wide diameters. The stratification characteristics of the fluids may be observed with a windowed cell separator at the outlet of the core sample. The condensation of heavy hydrocarbon gas and the dynamic characteristics of the fluids are observed with a sight glass at the outlet of the core sample.

National Geological and Geophysical Data Preservation Program: Successes and Lessons Learned

NASA Astrophysics Data System (ADS)

Adrian, B. M.

2014-12-01

The United States Geological Survey (USGS) is widely recognized in the earth science community as possessing extensive collections of geologic and geophysical materials gathered by its research personnel. Since the USGS was established in 1879, hundreds of thousands of samples have been gathered in collections that range from localized, geographically-based assemblages to ones that are national or international in scope. These materials include, but are not limited to, rock and mineral specimens; fossils; drill cores and cuttings; geochemical standards; and soil, sediment, and geochemical samples. The USGS National Geological and Geophysical Data Preservation Program (NGGDPP) was established with the passage of the Energy Policy Act of 2005. Since its implementation, the USGS NGGDPP has taken an active role in providing opportunities to inventory, archive and preserve geologic and geophysical samples, and to make these samples and ancillary data discoverable on the Internet. Preserving endangered geoscience collections is more cost effective than recollecting this information. Preserving these collections, however, is only one part of the process - there also needs to be a means to facilitate open discovery and access to the physical objects and the ancillary digital records. The NGGDPP has celebrated successes such as the development of the USGS Geologic Collections Management System (GCMS), a master catalog and collections management plan, and the implementation and advancement of the National Digital Catalog, a digital inventory and catalog of geological and geophysical data and collections held by the USGS and State geological surveys. Over this period of time there has been many lessons learned. With the successes and lessons learned, NGGDPP is poised to take on challenges the future may bring.

Phytoscreening with SPME: Variability Analysis.

PubMed

Limmer, Matt A; Burken, Joel G

2015-01-01

Phytoscreening has been demonstrated at a variety of sites over the past 15 years as a low-impact, sustainable tool in delineation of shallow groundwater contaminated with chlorinated solvents. Collection of tree cores is rapid and straightforward, but low concentrations in tree tissues requires sensitive analytics. Solid-phase microextraction (SPME) is amenable to the complex matrix while allowing for solvent-less extraction. Accurate quantification requires the absence of competitive sorption, examined here both in laboratory experiments and through comprehensive examination of field data. Analysis of approximately 2,000 trees at numerous field sites also allowed testing of the tree genus and diameter effects on measured tree contaminant concentrations. Collectively, while these variables were found to significantly affect site-adjusted perchloroethylene (PCE) concentrations, the explanatory power of these effects was small (adjusted R(2) = 0.031). 90th quantile chemical concentrations in trees were significantly reduced by increasing Henry's constant and increasing hydrophobicity. Analysis of replicate tree core data showed no correlation between replicate relative standard deviation (RSD) and wood type or tree diameter, with an overall median RSD of 30%. Collectively, these findings indicate SPME is an appropriate technique for sampling and analyzing chlorinated solvents in wood and that phytoscreening is robust against changes in tree type and diameter.

Lithologic and ground-water-quality data collected using Hoverprobe drilling techniques at the West Branch Canal Creek wetland, Aberdeen Proving Ground, Maryland, April-May 2000

USGS Publications Warehouse

Phelan, Daniel J.; Senus, Michael P.; Olsen, Lisa D.

2001-01-01

This report presents lithologic and groundwater- quality data collected during April and May 2000 in the remote areas of the tidal wetland of West Branch Canal Creek, Aberdeen Proving Ground, Maryland. Contamination of the Canal Creek aquifer with volatile organic compounds has been documented in previous investigations of the area. This study was conducted to investigate areas that were previously inaccessible because of deep mud and shallow water, and to support ongoing investigations of the fate and transport of volatile organic compounds in the Canal Creek aquifer. A unique vibracore drill rig mounted on a hovercraft was used for drilling and groundwater sampling. Continuous cores of the wetland sediment and of the Canal Creek aquifer were collected at five sites. Attempts to sample ground water were made by use of a continuous profiler at 12 sites, without well installation, at a total of 81 depths within the aquifer. Of those 81 attempts, only 34 sampling depths produced enough water to collect samples. Ground-water samples from two sites had the highest concentrations of volatile organic compounds?with total volatile organic compound concentrations in the upper part of the aquifer ranging from about 15,000 to 50,000 micrograms per liter. Ground-water samples from five sites had much lower total volatile organic compound concentrations (95 to 2,100 micrograms per liter), whereas two sites were essentially not contaminated, with total volatile organic compound concentrations less than or equal to 5 micrograms per liter.

Gas hydrates and active mud volcanism on the South Shetland continental margin, Antarctic Peninsula

NASA Astrophysics Data System (ADS)

Tinivella, U.; Accaino, F.; Della Vedova, B.

2008-04-01

During the Antarctic summer of 2003 2004, new geophysical data were acquired from aboard the R/V OGS Explora in the BSR-rich area discovered in 1996 1997 along the South Shetland continental margin off the Antarctic Peninsula. The objective of the research program, supported by the Italian National Antarctic Program (PNRA), was to verify the existence of a potential gas hydrate reservoir and to reconstruct the tectonic setting of the margin, which probably controls the extent and character of the diffused and discontinuous bottom simulating reflections. The new dataset, i.e. multibeam bathymetry, seismic profiles (airgun and chirp), and two gravity cores analysed by computer-aided tomography as well as for gas composition and content, clearly shows active mud volcanism sustained by hydrocarbon venting in the region: several vents, located mainly close to mud volcanoes, were imaged during the cruise and their occurrence identified in the sediment samples. Mud volcanoes, vents and recent slides border the gas hydrate reservoir discovered in 1996 1997. The cores are composed of stiff silty mud. In core GC01, collected in the proximity of a mud volcano ridge, the following gases were identified (maximum contents in brackets): methane (46 μg/kg), pentane (45), ethane (35), propane (34), hexane (29) and butane (28). In core GC02, collected on the flank of the Vualt mud volcano, the corresponding data are methane (0 μg/kg), pentane (45), ethane (22), propane (0), hexane (27) and butane (25).

Lunar and Meteorite Sample Disk for Educators

NASA Technical Reports Server (NTRS)

Foxworth, Suzanne; Luckey, M.; McInturff, B.; Allen, J.; Kascak, A.

2015-01-01

NASA Johnson Space Center (JSC) has the unique responsibility to curate NASA's extraterrestrial samples from past and future missions. Curation includes documentation, preservation, preparation and distribution of samples for research, education and public outreach. Between 1969 and 1972 six Apollo missions brought back 382 kilograms of lunar rocks, core and regolith samples, from the lunar surface. JSC also curates meteorites collected from a US cooperative effort among NASA, the National Science Foundation (NSF) and the Smithsonian Institution that funds expeditions to Antarctica. The meteorites that are collected include rocks from Moon, Mars, and many asteroids including Vesta. The sample disks for educational use include these different samples. Active relevant learning has always been important to teachers and the Lunar and Meteorite Sample Disk Program provides this active style of learning for students and the general public. The Lunar and Meteorite Sample Disks permit students to conduct investigations comparable to actual scientists. The Lunar Sample Disk contains 6 samples; Basalt, Breccia, Highland Regolith, Anorthosite, Mare Regolith and Orange Soil. The Meteorite Sample Disk contains 6 samples; Chondrite L3, Chondrite H5, Carbonaceous Chondrite, Basaltic Achondrite, Iron and Stony-Iron. Teachers are given different activities that adhere to their standards with the disks. During a Sample Disk Certification Workshop, teachers participate in the activities as students gain insight into the history, formation and geologic processes of the moon, asteroids and meteorites.

Assessment of subsurface chlorinated solvent contamination using tree cores at the front street site and a former dry cleaning facility at the Riverfront Superfund site, New Haven, Missouri, 1999-2003

USGS Publications Warehouse

Schumacher, John G.; Struckhoff, Garrett C.; Burken, Joel G.

2004-01-01

Tree-core sampling has been a reliable and inexpensive tool to quickly assess the presence of shallow (less than about 30 feet deep) tetrachloroethene (PCE) and trichloroethene (TCE) contamination in soils and ground water at the Riverfront Superfund Site. This report presents the results of tree-core sampling that was successfully used to determine the presence and extent of chlorinated solvent contamination at two sites, the Front Street site (operable unit OU1) and the former dry cleaning facility, that are part of the overall Riverfront Superfund Site. Traditional soil and ground-water sampling at these two sites later confirmed the results from the tree-core sampling. Results obtained from the tree-core sampling were used to design and focus subsequent soil and ground-water investigations, resulting in substantial savings in time and site assessment costs. The Front Street site is a small (less than 1-acre) site located on the Missouri River alluvium in downtown New Haven, Missouri, about 500 feet from the south bank of the Missouri River. Tree-core sampling detected the presence of subsurface PCE contamination at the Front Street site and beneath residential property downgradient from the site. Core samples from trees at the site contained PCE concentrations as large as 3,850 mg-h/kg (micrograms in headspace per kilogram of wet core) and TCE concentrations as large as 249 mg-h/kg. Soils at the Front Street site contained PCE concentrations as large as 6,200,000 mg/kg (micrograms per kilogram) and ground-water samples contained PCE concentrations as large as 11,000 mg/L (micrograms per liter). The former dry cleaning facility is located at the base of the upland that forms the south bank of the Missouri River alluvial valley. Tree-core sampling did not indicate the presence of PCE or TCE contamination at the former dry cleaning facility, a finding that was later confirmed by the analyses of soil samples collected from the site. The lateral extent of PCE contamination in trees was in close agreement with the extent of subsurface PCE contamination determined using traditional soil and ground-water sampling methods. Trees growing in soils containing PCE concentrations of 60 to 5,700 mg/kg or larger or overlying ground water containing PCE concentrations from 5 to 11,000 mg/L generally contained detectable concentrations of PCE. The depth to contaminated ground water was about 20 to 25 feet below the land surface. Significant quantitative relations [probability (p) values of less than 0.05 and correlation coefficient (r2) values of 0.88 to 0.90] were found between PCE concentrations in trees and subsurface soils between 4 and 16 feet deep. The relation between PCE concentrations in trees and underlying ground water was less apparent (r2 value of 0.17) and the poor relation is thought to be the result of equilibrium with PCE concentrations in soil and vapor in the unsaturated zone. Based on PCE concentrations detected in trees at the Front Street site and trees growing along contaminated tributaries in other operable units, and from field hydroponic experiments using hybrid poplar cuttings, analysis of tree-core samples appears to be able to detect subsurface PCE contamination in soils at levels of several hundred micrograms per liter or less and PCE concentrations in the range of 8 to 30 mg/L in ground water in direct contact with the roots. Loss of PCE from tree trunks by diffusion resulted in an exponential decrease in PCE concentrations with increasing height above the land surface in most trees. The rate of loss also appeared to be a function of the size and growth characteristics of the tree as some trees exhibited a linear loss with increasing height. Diffusional loss of PCE in small (0.5-inch diameter) trees was observed to occur at a rate more than 10 times larger than in trees 6.5 inches in diameter. Concentrations of PCE also exhibited directional variability around the tree trunks and concentration differe

Capturing haplotypes in germplasm core collections

USDA-ARS?s Scientific Manuscript database

Genomewide data sets of single nucleotide polymorphisms (SNPs) offer great potential to improve ex situ conservation. Two factors impede their use for producing core collections. First, due to the large number of SNPs, the assembly of collections that maximize diversity may be intractable using ex...

Relationships of mercury concentrations across tissue types, muscle regions and fins for two shark species.

PubMed

O'Bryhim, Jason R; Adams, Douglas H; Spaet, Julia L Y; Mills, Gary; Lance, Stacey L

2017-04-01

Mercury (Hg) exposure poses a threat to both fish and human health. Sharks are known to bioaccumulate Hg, however, little is known regarding how Hg is distributed between different tissue groups (e.g. muscle regions, organs). Here we evaluated total mercury (THg) concentrations from eight muscle regions, four fins (first dorsal, left and right pectorals, caudal-from both the inner core and trailing margin of each fin), and five internal organs (liver, kidney, spleen, heart, epigonal organ) from two different shark species, bonnethead (Sphyrna tiburo) and silky shark (Carcharhinus falciformis) to determine the relationships of THg concentrations between and within tissue groups. Total Hg concentrations were highest in the eight muscle regions with no significant differences in THg concentrations between the different muscle regions and muscle types (red and white). Results from tissue collected from any muscle region would be representative of all muscle sample locations. Total Hg concentrations were lowest in samples taken from the fin inner core of the first dorsal, pectoral, and caudal (lower lobe) fins. Mercury concentrations for samples taken from the trailing margin of the dorsal, pectoral, and caudal fins (upper and lower lobe) were also not significantly different from each other for both species. Significant relationships were found between THg concentrations in dorsal axial muscle tissue and the fin inner core, liver, kidney, spleen and heart for both species as well as the THg concentrations between the dorsal fin trailing margin and the heart for the silky shark and all other sampled tissue types for the bonnethead shark. Our results suggest that biopsy sampling of dorsal muscle can provide data that can effectively estimate THg concentrations in specific organs without using more invasive, or lethal methods. Copyright © 2017 Elsevier Ltd. All rights reserved.

New Mechanism of Extractive Electrospray Ionization Mass Spectrometry for Heterogeneous Solid Particles.

PubMed

Kumbhani, S; Longin, T; Wingen, L M; Kidd, C; Perraud, V; Finlayson-Pitts, B J

2018-02-06

Real-time in situ mass spectrometry analysis of airborne particles is important in several applications, including exposure studies in ambient air, industrial settings, and assessing impacts on visibility and climate. However, obtaining molecular and 3D structural information is more challenging, especially for heterogeneous solid or semisolid particles. We report a study of extractive electrospray ionization mass spectrometry (EESI-MS) for the analysis of solid particles with an organic coating. The goal is to elucidate how much of the overall particle content is sampled, and determine the sensitivity of this technique to the surface layers. It is shown that, for NaNO 3 particles coated with glutaric acid (GA), very little of the solid NaNO 3 core is sampled compared to the GA coating, whereas for GA particles coated with malonic acid (MA), significant signals from both the MA coating and the GA core are observed. However, conventional ESI-MS of the same samples collected on a Teflon filter (and then extracted) detects much more core material compared to EESI-MS in both cases. These results show that, for the experimental conditions used here, EESI-MS does not sample the entire particle but, instead, is more sensitive to surface layers. Separate experiments on single-component particles of NaNO 3 , GA, or citric acid show that there must be a kinetics limitation to dissolution that is important in determining EESI-MS sensitivity. We propose a new mechanism of EESI solvent droplet interaction with solid particles that is consistent with the experimental observations. In conjunction with previous EESI-MS studies of organic particles, these results suggest that EESI does not necessarily sample the entire particle when solid, and that not only solubility but also surface energies and the kinetics of dissolution play an important role.

Education and Certification Qualifications of Departmentalized Public High School-Level Teachers of Core Subjects: Evidence from the 2007-08 Schools and Staffing Survey. Statistical Analysis Report. NCES 2011-317

ERIC Educational Resources Information Center

Hill, Jason G.

2011-01-01

This report examines the postsecondary majors and teaching certifications of public high school-level teachers of departmentalized classes in a selection of subject areas by using data from the 2007-08 Schools and Staffing Survey (SASS), a sample survey of elementary and secondary schools in the United States. SASS collects data on American…

Environmental evaluations for deepening of Richmond Harbor and Santa Fe Channels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brown, B.; Kohn, N.P.; Crecelius, E.A.

Richland, California is an important commercial port in San Francisco Bay. The San Francisco District of the US Army Corps of Engineers (USACE) plans to increase the depth of Richmond Harbor and Santa Fe Channels to -38 feet Mean Lower Low Water (MLLW) to accommodate deep-draft commercial vessels. The total volume of dredged material is expected to be approximately 1.4 million cubic yards. The options for disposal of the dredged material are aquatic disposal and upland disposal. The purpose of this study was to develop a database on chemical compounds in the dredged material to assist with determination of disposalmore » methods and the need for additional testing. This purpose was accomplished through an extensive field sampling program followed by chemical analysis of samples. Field sampling involved collection of core samples from Sante Fe and Richmond Harbor Channels. Cores were shipped to Battelle/Marine Sciences Laboratory, where they were subsampled for chemical analysis and/or archived by freezing. All sediment and water samples were analyzed for priority pollutants, including metals, organotins, base/neutral semivolatile organic compounds, chlorinated pesticides and PCBs, herbicide acids, and acidic phenols. Sediment samples were also analyzed for oil and grease and total organic carbon. Organophosphorus pesticides and dioxins and furans were measured in selected sediment samples from Richland Harbor Channel and from both sediment and water samples from Santa Fe Channel. 21 refs., 10 figs., 60 tabs.« less

Planetary exploration through year 2000: An augmented program. Part two of a report by the Solar System Exploration Committee of the NASA Advisory Council

NASA Technical Reports Server (NTRS)

1986-01-01

In 1982, the NASA Solar System Exploration Committee (SSEC) published a report on a Core Program of planetary missions, representing the minimum-level program that could be carried out in a cost effective manner, and would yield a continuing return of basic scientific results. This is the second part of the SSEC report, describing missions of the highest scientific merit that lie outside the scope of the previously recommended Core Program because of their cost and technical challenge. These missions include the autonomous operation of a mobile scientific rover on the surface of Mars, the automated collection and return of samples from that planet, the return to Earth of samples from asteroids and comets, projects needed to lay the groundwork for the eventual utilization of near-Earth resources, outer planet missions, observation programs for extra-solar planets, and technological developments essential to make these missions possible.

Shipboard magnetic field "noise" reveals shallow heavy mineral sediment concentrations in Chesapeake Bay

USGS Publications Warehouse

Shah, Anjana K.; Vogt, Peter R.; Rosenbaum, Joseph G.; Newell, Wayne L.; Cronin, Thomas M.; Willard, Debra A.; Hagen, Rick A.; Brozena, John; Hofstra, Albert

2012-01-01

Shipboard magnetic field data collected over Chesapeake Bay exhibit low-amplitude, short-wavelength anomalies that most likely indicate shallow concentrations of heavy mineral sediments. Piston core layers and black sand beach samples exhibit enhanced magnetic susceptibilities and carry remanent magnetization, with mineralogical analyses indicating ilmenite and trace magnetite and/or maghemite and hematite. The anomalies are subtle and would be filtered as noise using traditional approaches, but can instead be highlighted using spectral methods, thus providing nearly continuous coverage along survey tracks. The distribution of the anomalies provides constraints on relevant sorting mechanisms. Comparisons to sonar data and previous grab samples show that two of three areas surveyed exhibit short-wavelength anomalies that are clustered over sand-covered areas, suggesting initial sorting through settling mechanisms. This is supported by a correlation between core magnetic susceptibility and grain size. Near the Choptank River, where sediment resuspension is wave-dominated, anomalies show a sharp decrease with seafloor depth that cannot be explained by signal attenuation alone. In Pocomoke Sound, where both tidal currents and wave-action impact sediment resuspension, anomalies show a more gradual decrease with depth. Near the mouth of the bay, where there is a higher influx of sediments from the continental shelf, short-wavelength anomalies are isolated and do not appear to represent heavy mineral sand concentrations. These combined observations suggest the importance of further sorting by erosional processes in certain parts of the bay. Additionally, comparisons of these data to cores sampling pre-Holocene sediments suggest that the sorting of heavy minerals in higher energy, shallow water environments provides a mechanism for correlations between core magnetic susceptibility and sea-level changes.

Towards constraining the stratosphere-troposphere exchange of radiocarbon: strategies of stratospheric 14CO2 measurements using AirCore

NASA Astrophysics Data System (ADS)

Chen, Huilin; Paul, Dipayan; Meijer, Harro; Miller, John; Kivi, Rigel; Krol, Maarten

2016-04-01

Radiocarbon (14C) plays an important role in the carbon cycle studies to understand both natural and anthropogenic carbon fluxes, but also in atmospheric chemistry to constrain hydroxyl radical (OH) concentrations in the atmosphere. Apart from the enormous 14C emissions from nuclear bomb testing in the 1950s and 1960s, radiocarbon is primarily produced in the stratosphere due to the cosmogenic production. To this end, better understanding the stratospheric radiocarbon source is very useful to advance the use of radiocarbon for these applications. However, stratospheric 14C observations have been very limited so that there are large uncertainties on the magnitude and the location of the 14C production as well as the transport of radiocarbon from the stratosphere to the troposphere. Recently we have successfully made stratospheric 14C measurements using AirCore samples from Sodankylä, Northern Finland. AirCore is an innovative atmospheric sampling system, which passively collects atmospheric air samples into a long piece of coiled stainless steel tubing during the descent of a balloon flight. Due to the relatively low cost of the consumables, there is a potential to make such AirCore profiling in other parts of the world on a regular basis. In this study, we simulate the 14C in the atmosphere and assess the stratosphere-troposphere exchange of radiocarbon using the TM5 model. The Sodankylä radiocarbon measurements will be used to verify the performance of the model at high latitude. Besides this, we will also evaluate the influence of different cosmogenic 14C production scenarios and the uncertainties in the OH field on the seasonal cycles of radiocarbon and on the stratosphere-troposphere exchange, and based on the results design a strategy to set up a 14C measurement program using AirCore.

Robotic sampling system for an unmanned Mars mission

NASA Technical Reports Server (NTRS)

Chun, Wendell

1989-01-01

A major robotics opportunity for NASA will be the Mars Rover/Sample Return Mission which could be launched as early as the 1990s. The exploratory portion of this mission will include two autonomous subsystems: the rover vehicle and a sample handling system. The sample handling system is the key to the process of collecting Martian soils. This system could include a core drill, a general-purpose manipulator, tools, containers, a return canister, certification hardware and a labeling system. Integrated into a functional package, the sample handling system is analogous to a complex robotic workcell. Discussed here are the different components of the system, their interfaces, forseeable problem areas and many options based on the scientific goals of the mission. The various interfaces in the sample handling process (component to component and handling system to rover) will be a major engineering effort. Two critical evaluation criteria that will be imposed on the system are flexibility and reliability. It needs to be flexible enough to adapt to different scenarios and environments and acquire the most desirable specimens for return to Earth. Scientists may decide to change the distribution and ratio of core samples to rock samples in the canister. The long distance and duration of this planetary mission places a reliability burden on the hardware. The communication time delay between Earth and Mars minimizes operator interaction (teleoperation, supervisory modes) with the sample handler. An intelligent system will be required to plan the actions, make sample choices, interpret sensor inputs, and query unknown surroundings. A combination of autonomous functions and supervised movements will be integrated into the sample handling system.

User Policies | Center for Cancer Research

Cancer.gov

User Policies 1. Authorship and Acknowledgement: The SAXS Core facility is a CCR resource dedicated to the CCR researchers. But we also make this resource accessible to non-CCR users free of charge. There are three ways to make use the SAXS Core resource. Asking the SAXS Core staff to collect, process and analyze data, and jointly interpret data with your teams. Asking the core staff to collect data and send it to you.

Sedimentology of cores recovered from the Canada Basin of the Arctic Ocean

NASA Astrophysics Data System (ADS)

Edwards, B. D.; Saint-Ange, F.; Pohlman, J.; Higgins, J.; Mosher, D. C.; Lorenson, T. D.; Hart, P.

2011-12-01

Researchers from the United States and Canada are collaborating to understand the tectonic and sedimentary history of the Arctic Ocean between Canada and Alaska. As part of this on-going study, a joint US-Canadian ice breaker expedition operated in parts of the Canada Basin during August 2010. Occasional interruptions of the seismic data acquisition provided the ship time to collect gravity and piston cores at five sites-of-opportunity throughout the basin. High-resolution multibeam bathymetry and chirp sub-bottom profiler data collected immediately prior to coring reveal the fine-scale morphology of each site. Core photographs, X-ray radiographs, and physical property data support the following descriptions. Two piston cores were collected from the Beaufort Sea continental margin in a region of known bottom simulating reflectors (BSRs). Site 1 (2538 m water depth): This core recovered 5.72 m of gas-charged, gray sticky clay and silty-clay from an approximately 1100 m diameter, 130 m high conical mound overlying the crest of a buried anticline. Gas hydrate recovered in the core catcher combined with cracks and voids, methane and other hydrocarbon gasses, pyrite concretions, chemosynthetic clams, carbonate nodules, and soft carbonate masses indicate the likely upward migration of deep-seated fluids. Site 2 (1157 m water depth): This core, positioned 40 km upslope from the gas hydrate core, recovered 3 m of gray sticky silty clay and clayey silt near the base of an erosional scarp. Some voids and fracturing are apparent but carbonate masses and pyrite concretions are absent. Site 3 (3070 m water depth): This core from the top of a seamount discovered in 2009 in the north-central part of the Canada Basin recovered 4.94 m of sediment. More than 3 m of dark brown to yellowish brown, massive interbedded silty clays with sands and matrix-supported gravels (ice rafted debris [IRD]) occur in abrupt contact with underlying reddish yellow to brownish yellow silty clay and gravelly sandy clay interpreted to be altered hydrothermally. Successions of IRD layers create a thinly- to medium-bedded sequence throughout the lower section. Site 4 (3700 m water depth; central Canada Basin): This core recovered 3.4 m of sediment typified by decimeter-thick sequences of stacked graded beds with erosional basal contacts (Bouma sequences) characteristic of turbidite deposition. Site 5 (2081 m water depth; continental slope west of the Canadian archipelago): This core recovered 4.96 m of sediment of which the upper 2 m is silty clay to clayey silt with dispersed sand and granules. This upper section has an irregular, sharp basal contact with an underlying 16-cm-thick clast-supported massive gravel. The gravel has a scoured basal contact and overlies a monotonous gray clayey silt containing dispersed granules of IRD. Sparse and poorly preserved fauna throughout all the cores make age determination difficult; however, given the paucity of sediment cores in the Arctic Ocean, these samples provide vital geophysical groundtruth and sedimentological information about the basin.

Biological and geochemical data of gravity cores from Mobile Bay, Alabama

USGS Publications Warehouse

Richwine, Kathryn A.; Marot, Marci; Smith, Christopher G.; Osterman, Lisa E.; Adams, C. Scott

2013-01-01

A study was conducted to understand the marine-influenced environments of Mobile Bay, Alabama, by collecting a series of box cores and gravity cores. One gravity core in particular demonstrates a long reference for changing paleoenvironmental parameters in Mobile Bay. Due to lack of abundance of foraminifers and (or) lack of diversity, the benthic foraminiferal data for two of the three gravity cores are not included in the results. The benthic foraminiferal data collected and geochemical analyses in this study provide a baseline for recent changes in the bay.

Snake River Plain FORGE Well Data for USGS-142

DOE Data Explorer

Robert Podgorney

2015-11-23

Well data for the USGS-142 well located in eastern Snake River Plain, Idaho. This data collection includes lithology reports, borehole logs, and photos of rhyolite core samples. This collection of data has been assembled as part of the site characterization data used to develop the conceptual geologic model for the Snake River Plain site in Idaho, as part of phase 1 of the Frontier Observatory for Research in Geothermal Energy (FORGE) initiative. They were assembled by the Snake River Geothermal Consortium (SRGC), a team of collaborators that includes members from national laboratories, universities, industry, and federal agencies, lead by the Idaho National Laboratory (INL).

Density Measurement of Liquid FeS Under High Pressure and High Temperature

NASA Astrophysics Data System (ADS)

Yu, T.; Young, C.; Chen, J.; Baldwin, K.

2005-05-01

Sulfur is considered one of the possible light elements in the core which might be responsible for the density deficit. We studied the liquid state of sulfur in iron due to sulfur¡¦s lack of amount in the mantle; easiness to alloy with iron; and the predicted 5% ~ 10% amount of this light element in the core (Ahrens, 1979; Sherman, 1997). Restricted by the modern development of the multianvil high pressure experimental equipments, the experiments are limited at a lower pressure range (<30GPa) comparing with the outer core pressure condition. Therefore, extrapolation of data derived at low pressure range to the condition of the outer core (130-330GPa) has to be applied and may produce results which are way far from the true numbers. However, at the point while the techniques are limited, studying the physical properties of the molten FeS at relatively low pressure still provides us a better picture of the physical behaviors of the liquid outer core comparing with data derived from solid state FeS experiments. The lack of melt density data at low pressure provides another motivation for us to study the physical properties of melt. The radiography (shadowgraphy) system on Beam Line X17B2, NSLS at the Brookhaven National Laboratory is an add-on system attached to the in situ x-ray beam line setup. It includes a YAG fluorescent screen, an optical mirror, focusing-magnification lenses, and a CCD camera and/or a video camera. Before the melting temperature, the radiograph system yields a maximum 1% difference in density comparing with the data collected by the traditional x-ray diffraction method. We have successfully examined liquid FeS samples by applying this technique at the NSLS. With a sapphire (Al2O3) sphere surrounded by FeS powder. The image of the sphere was clearly shown due to the absorption coefficient difference between these two materials. The density fitting method developed by our group has produced convincing data. The preliminary results of the density measurements of molten FeS show that the derived liquid density variation for the same sample remains under 1%. This study has collected in situ high pressure and high temperature x-ray diffraction data of the FeS sample up to 4GPa and 1400°C. Combined with the derived density data, the equation of state of the liquid FeS can be constructed.

Where Will All Your Samples Go?

NASA Astrophysics Data System (ADS)

Lehnert, K.

2017-12-01

Even in the digital age, physical samples remain an essential component of Earth and space science research. Geoscientists collect samples, sometimes locally, often in remote locations during expensive field expeditions, or at sample repositories and museums. They take these samples to their labs to describe and analyze them. When the analyses are completed and the results are published, the samples get stored away in sheds, basements, or desk drawers, where they remain unknown and inaccessible to the broad science community. In some cases, they will get re-analyzed or shared with other researchers, who know of their existence through personal connections. The sad end comes when the researcher retires: There are many stories of samples and entire collections being discarded to free up space for new samples or other purposes, even though these samples may be unique and irreplaceable. Institutions do not feel obligated and do not have the resources to store samples in perpetuity. Only samples collected in large sampling campaigns such as the Ocean Discovery Program or cores taken on ships find a home in repositories that curate and preserve them for reuse in future science endeavors. In the era of open, transparent, and reproducible science, preservation and persistent access to samples must be considered a mandate. Policies need to be developed that guide investigators, institutions, and funding agencies to plan and implement solutions for reliably and persistently curating and providing access to samples. Registration of samples in online catalogs and use of persistent identifiers such as the International Geo Sample Number are first steps to ensure discovery and access of samples. But digital discovery and access loses its value if the physical objects are not preserved and accessible. It is unreasonable to expect that every sample ever collected can be archived. Selection of those samples that are worth preserving requires guidelines and policies. We also need to define standards that institutions must comply with to function as a trustworthy sample repository similar to trustworthy digital repositories. The iSamples Research Coordination Network of the EarthCube program aims to address some of these questions in workshops planned for 2018. This panel session offers an opportunity to ignite the discussion.

Study of sample drilling techniques for Mars sample return missions

NASA Technical Reports Server (NTRS)

Mitchell, D. C.; Harris, P. T.

1980-01-01

To demonstrate the feasibility of acquiring various surface samples for a Mars sample return mission the following tasks were performed: (1) design of a Mars rover-mounted drill system capable of acquiring crystalline rock cores; prediction of performance, mass, and power requirements for various size systems, and the generation of engineering drawings; (2) performance of simulated permafrost coring tests using a residual Apollo lunar surface drill, (3) design of a rock breaker system which can be used to produce small samples of rock chips from rocks which are too large to return to Earth, but too small to be cored with the Rover-mounted drill; (4)design of sample containers for the selected regolith cores, rock cores, and small particulate or rock samples; and (5) design of sample handling and transfer techniques which will be required through all phase of sample acquisition, processing, and stowage on-board the Earth return vehicle. A preliminary design of a light-weight Rover-mounted sampling scoop was also developed.

Extended Late-Cretaceous Magnetostratigraphy of the James Ross Basin Island, Antarctica

NASA Astrophysics Data System (ADS)

Chaffee, T. M.; Mitchell, R.; Slotznick, S. P.; Buz, J.; Biasi, J.; O'Rourke, J.; Sousa, F.; Flannery, D.; Fu, R. R.; Kirschvink, J. L.

2017-12-01

Sediments in the James Ross Island Basin (JRB) in the West Antarctic Peninsula contain one of the world's highest-resolution records of the late Cretaceous period, including the end-Cretaceous (K-Pg) mass extinction event. However, the geological record of this region has been poorly studied, limited in the past only to the relative dating of local fossils. Recent studies of this region have provided only low-resolution data, with gaps of greater than 0.5 million years between samples where no data was collected. A high-resolution magnetostratigraphic sampling and analysis is necessary in order to accurately determine the age of the JRB sediments and connect them to the global time record. During the 2016 field season in Antarctica, our team collected nearly 1,300 sample cores from JRB sediments using a diamond-tipped, gasoline powered coring drill. Drill sites were densely clustered across bedding in order to obtain a high-resolution record of magnetostratigraphy, permitting the recognition of distinct, high-resolution units of time (<50 thousand years) present in local stratigraphy Our current results come from thermal demagnetization of the characteristic remanance (ChRM) of a group of over 300 of these samples from the Brandy Bay area which constrain the end of the Cretaceous Superchron (C34N) and the C34N/C34R reversal and allow us to investigate the presence of geomagnetic excursions before the end of superchron. These samples span in age from the top of C34N to the mid-Maastrichtian. We also test the Late Cretaceous True Polar Wander (TPW) hypothesis. Current theories on the global extent of TPW are not substantiated by any data sets that confirm the presence and similarity of the effect across multiple continents. Evidence of a rapid TPW oscillation in Antarctica can be correlated with other samples from the North American continent currently under study to provide evidence for the theory of global, short-timescale TPW.

Mg/Ca in foraminifera from plankton tows: Evaluation of proxy controls and comparison with core tops

NASA Astrophysics Data System (ADS)

Martínez-Botí, M. A.; Mortyn, P. G.; Schmidt, D. N.; Vance, D.; Field, D. B.

2011-07-01

Calibrations and validations of the Mg/Ca paleothermometer in planktic foraminifera have traditionally been performed by means of core tops, sediment trap samples and culture experiments. In this study, Mg/Ca ratios have been measured in 8 species of planktic foraminifera (non-globorotaliids Globigerina bulloides, Neogloboquadrina incompta, Orbulina universa, Globigerinoides ruber (white) and G. sacculifer, and globorotaliids Globorotalia inflata, G. hirsuta and G. truncatulinoides), collected live from the North Atlantic, the Southeast Atlantic, the Northeast Pacific and the Norwegian Sea. Mg/Ca ratios for N. incompta, O. universa, G. ruber, G. sacculifer and G. truncatulinoides are similar to available North Atlantic core-top studies and consistent with previous calibration equations. In contrast, some G. bulloides, G. inflata and G. hirsuta Mg/Ca ratios are higher than predicted based on δ 18O values, and exhibit considerable scatter. This elevation may be in part related to the impact of potential isotopic disequilibrium effects on δ 18O-derived temperatures, which the Mg/Ca ratios are compared to. Another factor that may affect Mg/Ca ratios in some plankton samples is the lack of low-Mg test components (e.g., final chambers or gametogenic calcite), because of the incompleteness of the life cycle at the time of collection. N. incompta Mg/Ca ratios are correlated with salinity, with Mg/Ca changing about 16% per salinity unit, suggesting that salinity may have an important influence on Mg/Ca of some species even in non-extreme salinity environments. This is the first extensive multispecific plankton tow Mg/Ca data set from different oceanographic regions, which has been used to test the Mg/Ca temperature proxy in the context of published calibration data, highlighting the complex physiological/ecological controls on the acquisition of the proxy signal.

Vergleich von hydraulischen und chemischen Sedimenteigenschaften aus Spül- und Kernbohrungen im Raum Peine (Norddeutschland)

NASA Astrophysics Data System (ADS)

Konrad, C.; Walther, W.; Reimann, T.; Rogge, A.; Stengel, P.; Well, R.

2008-03-01

Comparison of hydraulic and chemical properties of sediments from flush- and core drillings in the area of Peine (Germany). Because of financial constraints, investigations of nitrate metabolism are often based on disturbed borehole samples. It is arguable, however, whether disturbed samples are suitable for these types of investigations. Disadvantages of disturbed samples in comparison to undisturbed core samples are well known and include possible contamination of the sample by mud additives, destruction of the sediment formation and the insecurity concerning the correct depth allocation. In this study, boreholes were drilled at three locations to a maximum depth of 50 m. The extracted samples, as intact sediment cores and drill cuttings, were studied with regard to chemical and hydraulic parameters of the aquifer sediments. The results show: 1. hydraulic parameters are not affected by clay-based mud; 2. disturbed samples contain less fine grain material relative to the core samples, and the hydraulic conductivity can only be estimated from catch samples; 3. catch samples contain fewer reducing agents (sulphides, organic carbon) than core samples in hydraulically passive zones (defined as K < 10 6 m · s 1); 4. the results of analyses of disturbed and undisturbed core samples are in good agreement for hydraulically active zones (K ≥ 10 6 m · s 1).

Evaluation of methods to sample fecal indicator bacteria in foreshore sand and pore water at freshwater beaches.

PubMed

Vogel, Laura J; Edge, Thomas A; O'Carroll, Denis M; Solo-Gabriele, Helena M; Kushnir, Caitlin S E; Robinson, Clare E

2017-09-15

Fecal indicator bacteria (FIB) are known to accumulate in foreshore beach sand and pore water (referred to as foreshore reservoir) where they act as a non-point source for contaminating adjacent surface waters. While guidelines exist for sampling surface waters at recreational beaches, there is no widely-accepted method to collect sand/sediment or pore water samples for FIB enumeration. The effect of different sampling strategies in quantifying the abundance of FIB in the foreshore reservoir is unclear. Sampling was conducted at six freshwater beaches with different sand types to evaluate sampling methods for characterizing the abundance of E. coli in the foreshore reservoir as well as the partitioning of E. coli between different components in the foreshore reservoir (pore water, saturated sand, unsaturated sand). Methods were evaluated for collection of pore water (drive point, shovel, and careful excavation), unsaturated sand (top 1 cm, top 5 cm), and saturated sand (sediment core, shovel, and careful excavation). Ankle-depth surface water samples were also collected for comparison. Pore water sampled with a shovel resulted in the highest observed E. coli concentrations (only statistically significant at fine sand beaches) and lowest variability compared to other sampling methods. Collection of the top 1 cm of unsaturated sand resulted in higher and more variable concentrations than the top 5 cm of sand. There were no statistical differences in E. coli concentrations when using different methods to sample the saturated sand. Overall, the unsaturated sand had the highest amount of E. coli when compared to saturated sand and pore water (considered on a bulk volumetric basis). The findings presented will help determine the appropriate sampling strategy for characterizing FIB abundance in the foreshore reservoir as a means of predicting its potential impact on nearshore surface water quality and public health risk. Copyright © 2017 Elsevier Ltd. All rights reserved.

Morphology and composition of spinel in Pu'u 'O'o lava (1996-1998), Kilauea volcano, Hawaii

USGS Publications Warehouse

Roeder, P.L.; Thornber, C.; Poustovetov, Alexei; Grant, A.

2003-01-01

The morphology and composition of spinel in rapidly quenched Pu'u 'O'o vent and lava tube samples are described. These samples contain glass, olivine phenocrysts (3-5 vol.%) and microphenocrysts of spinel (~0.05 vol.%). The spinel surrounded by glass occurs as idiomorphic octahedra 5-50 μm in diameter and as chains of octahedra that are oriented with respect to each other. Spinel enclosed by olivine phenocrysts is sometimes rounded and does not generally form chains. The temperature before quenching was calculated from the MgO content of the glass and ranges from 1150oC to 1180oC. The oxygen fugacity before quenching was calculated by two independent methods and the log f O2 ranged from -9.2 to -9.9 (delta QFM=-1). The spinel in the Pu'u'O'o samples has a narrow range in composition with Cr/(Cr+Al)=0.61 to 0.73 and Fe2+/(Fe2++Mg) =0.46 to 0.56. The lower the calculated temperature for the samples, the higher the average Fe2+/(Fe2++Mg), Fe3+ and Ti in the spinel. Most zoned spinel crystals decrease in Cr/(Cr+Al) from core to rim and, in the chains, the Cr/(Cr+Al) is greater in the core of larger crystals than in the core of smaller crystals. The occurrence of chains and hopper crystals and the presence of Cr/(Cr+Al) zoning from core to rim of the spinel suggest diffusion-controlled growth of the crystals. Some of the spinel crystals may have grown rapidly under the turbulent conditions of the summit reservoir and in the flowing lava, and the crystals may have remained in suspension for a considerable period. The rapid growth may have caused very local (μm) gradients of Cr in the melt ahead of the spinel crystal faces. The crystals seem to have retained the Cr/(Cr+Al) ratio that developed during the original growth of the crystal, but the Fe2+/(Fe2++Mg) ratio may have equilibrated fairly rapidly with the changing melt composition due to olivine crystallization. Six of the samples were collected on the same day at various locations along a 10-km lava tube and the calculated pre-collection temperatures of the samples show a 5oC drop with distance from the vent. The average Fe2+/(Fe2++Mg) of the spinel in these samples shows a weak positive correlation with decreasing MgO in the glass of these samples. The range in Cr2O3 (0.041-0.045 wt.%) of the glass for these six samples is too small to distinguish a consistent change along the lava tube. The spinel in the Pu'u 'O'o samples shows a zoning trend in a Cr-Al-Fe3+ diagram almost directly away from the Cr apex. This compares with a zoning trend in rapidly quenched MORB samples away from Cr coupled with decreasing Fe3+. The trend away from Cr displayed by spinel in rapidly quenched samples is in marked contrast to the trend of increasing Fe3+ shown by spinel in slowly cooled lava. 

Method and apparatus utilizing ionizing and microwave radiation for saturation determination of water, oil and a gas in a core sample

DOEpatents

Maerefat, N.L.; Parmeswar, R.; Brinkmeyer, A.D.; Honarpour, M.

1994-08-23

A system is described for determining the relative permeabilities of gas, water and oil in a core sample has a microwave emitter/detector subsystem and an X-ray emitter/detector subsystem. A core holder positions the core sample between microwave absorbers which prevent diffracted microwaves from reaching a microwave detector where they would reduce the signal-to-noise ratio of the microwave measurements. The microwave emitter/detector subsystem and the X-ray emitter/detector subsystem each have linear calibration characteristics, allowing one subsystem to be calibrated with respect to the other subsystem. The dynamic range of microwave measurements is extended through the use of adjustable attenuators. This also facilitates the use of core samples with wide diameters. The stratification characteristics of the fluids may be observed with a windowed cell separator at the outlet of the core sample. The condensation of heavy hydrocarbon gas and the dynamic characteristics of the fluids are observed with a sight glass at the outlet of the core sample. 11 figs.

Radiocarbon chronology of Black Sea sediments

NASA Astrophysics Data System (ADS)

Jones, Glenn A.; Gagnon, Alan R.

1994-03-01

Accelerator Mass Spectrometer (AMS) radiocarbon analyses have been made on 102 samples from 12 sediment cores and 23 samples from two water column profiles. These materials, collected during the first leg of the 1988 joint U.S.-Turkish Black Sea Expedition, provide the most comprehensive radiocarbon chronology of Black Sea sediments yet attempted. Radiocarbon analyses from carefully collected box cores and a mollusc shell collected live in 1931 suggest the prebomb surface waters had a Δ 14C value of -55% (460 years) and that the maximum detrital correction for radiocarbon ages of Unit I sediments is 580 years for the organic carbon and 260 years for the carbonate fractions. Evidence does not support the 1430-2000 years pre-bomb surface water and/or detrital corrections argued for in past studies. The best estimates for the age of the beginning of the final invasion of the coccolithophore Emiliania huxleyi (Unit 1/2 boundary of Ross and DEGENS, 1974, The Black Sea—geology, chemistry and biology, pp. 183-199) and the age of the first invasion of E. huxeleyi (Unit I/II boundary of HAYet al., 1991, Deep-Sea Research, 38, S1211-S1235) are 1635 ± 60 and 2720 ± 160 years BP, respectively. Sapropel formation began at approximately 7540 ± 130 years BP at all depths in the basin, a pattern in disagreement with those predicted by existing time-evolution models of sapropel formation for this basin. Our data suggest that the oxic-anoxic interface has remained relatively stable throughout the Holocene, is controlled largely by the physical oceanography of the basin, and has not evolved as assumed by previous workers.

Development of an optical fiber SERS microprobe for minimally invasive sensing applications

NASA Astrophysics Data System (ADS)

Mamun, Md Abdullah Al; Juodkazis, Saulius; Mahadevan-Jansen, Anita; Stoddart, Paul R.

2018-02-01

Numerous potential biomedical sensing applications of surface-enhanced Raman scattering (SERS) have been reported, but its practical use has been limited by the lack of a robust sensing platform. Optical fiber SERS probes show great promise, but are limited by the prominent silica Raman background, which requires the use of bulky optics for filtering the signal collection and excitation delivery paths. In the present study, a SERS microprobe has been designed and developed to eliminate the bottlenecks outlined above. For efficient excitation and delivery of the SERS signal, both hollow core photonic crystal fiber and double clad fiber have been investigated. While the hollow core fiber was still found to have excessive silica background, the double clad fiber allows efficient signal collection via the multi-mode inner cladding. A micro filtering mechanism has been designed, which can be integrated into the tip of the optical fiber SERS probe, providing filtering to suppress silica Raman background and thus avoiding the need for bulky optics. The design also assists in the efficient collection of SERS signal from the sample by rejecting Rayleigh scattered light from the sample. Optical fiber cleaving using ultra-short laser pulses was tested for improved control of the fiber tip geometry. With this miniaturized and integrated filtering mechanism, it is expected that the developed probe will promote the use of SERS for minimally invasive biomedical monitoring and sensing applications in future. The probe could potentially be placed inside a small gauge hypodermic needle and would be compatible with handheld portable spectrometers.

A Comparison of Naturally-Occurring and Artificially Stimulated Uranium(VI) Bioreduction in Sediment from a Field-scale Experiment in Rifle, CO

NASA Astrophysics Data System (ADS)

Campbell, K. M.; Williams, K. H.; Lesher, E.; Davis, J. A.; Long, P. E.

2007-12-01

Long-term remediation of uranium (U)-contaminated groundwater poses one of the greatest challenges in the clean-up of impacted sites. One solution is to reduce dissolved U(VI) to insoluble U(IV) precipitates by stimulating indigenous metal reducing bacterial populations in situ. Contamination from a former U mine tailings repository (Rifle, CO) provides a research site to study the efficacy of biostimulated U(VI) reduction at the field scale. Several cores were drilled in June 2007 across a region of naturally-occurring U(VI) bioreduction. The cores represent a cross section of sediment that ranges from minimally reducing to highly reducing. Anaerobic sediment samples from the cores were analyzed for labile U(VI) content by carbonate extraction in anoxic conditions (pH 9.4, 14 mM NaHCO3, 2.8 mM Na2CO¬3). A subset of the same core sections were dried and oxidized by exposure to air for 2 weeks. The carbonate extraction was repeated, and the amount of U(IV) present in the anaerobic sample was calculated by difference between the anoxic and oxidized extractions. An acid extraction was also performed on the oxidized sediments to compare the carbonate extractable and the acid extractable U fractions. The highest U concentrations were found in the highly bioreduced sediment, with the majority of U present as U(IV) (66-92%). The regions of highest bioreduction also correspond to elevated concentrations of solid phase organic carbon, suggesting that natural bioreduction is stimulated by zones of increased organic carbon content. The same field site was then used for an artificially stimulated bioreduction experiment, where the indigenous bacterial community was stimulated by injecting acetate upgradient of the core collection location. Carbonate and acid extractions were performed on core samples taken after the completion of the acetate injection. This work evaluates the composition of the sediment before and after biostimulation as a way of directly comparing the extent of natural U(VI) bioreduction to acetate-stimulated bioreduction in order to facilitate the design of a more effective bioremediation strategy for this site.

The Impact of the 1989 Exxon Valdez Oil Spill on Phytoplankton as Evidenced Through the Sedimentary Dinoflagellate Cyst Records in Prince William Sound (Alaska, USA).

NASA Astrophysics Data System (ADS)

Genest, M.; Pospelova, V.; Williams, J. R.; Dellapenna, T.; Mertens, K.; Kuehl, S. A.

2016-12-01

Large volumes of crude oil are extracted from marine environments and transported via the sea, putting coastal communities at a greater risk of oils spills. It is therefore crucial for these communities to properly assess the risk. The first step is to understand the effects of such events on the environment, which is limited by the lack of research on the impact of oil spills on phytoplankton. This first-of-its-kind research aims to identify how one of the major groups of phytoplankton, dinoflagellates, have been affected by the 1989 Exxon Valdez oil spill in Prince William Sound (PWS), Alaska. To do this, sedimentary records of dinoflagellate cysts, produced during dinoflagellate reproduction and preserved in the sediment, were analyzed. Two sediment cores were collected from PWS in 2012. The sediments are mainly composed of silt with a small fraction of clay. Both well-dated with 210Pb and 137Cs, the cores have high sedimentation rates, allowing for an annual to biannual resolution. Core 10 has a sedimentation rate of 1.1 cm yr-1 and provides continuous record since 1957, while Core 12 has a sedimentation rate of 1.3 cm yr-1 and spans from 1934. The cores were subsampled every centimeter for a total of 110 samples. Samples were treated using a standard palynological processing technique to extract dinoflagellate cysts and 300 cysts were counted per sample. In both cores, cysts were abundant, diverse and well preserved with the average cyst assemblage being characterized by an equal number of cysts produced by autotrophic and heterotrophic dinoflagellates. Of the 40 dinoflagellate cyst taxa, the most abundant are: Operculodinium centrocarpum and Brigantedinium spp. Other common species are: Spiniferites ramosus, cysts of Pentapharsodinium dalei, Echinidinium delicatum, E. zonneveldiae, E. transparantum, Islandinium minutum, and a thin pale brown Brigantedinium type. Changes in the sedimentary sequence of dinoflagellate cysts were analyzed by determining cyst relative abundances, species richness, total cyst concentrations and fluxes before, during and after the oil spill. This analysis provided insight into how phytoplankton can be affected by an oil spill and a timeline for their recovery.

Spatial and seasonal variations of elemental composition in Mt. Everest (Qomolangma) snow/firn

NASA Astrophysics Data System (ADS)

Kang, Shichang; Zhang, Qianggong; Kaspari, Susan; Qin, Dahe; Cong, Zhiyuan; Ren, Jiawen; Mayewski, Paul A.

In May 2005, a total of 14 surface snow (0-10 cm) samples were collected along the climbing route from the advanced base camp to the summit (6500-8844 m a.s.l.) on the northern slope of Mt. Everest (Qomolangma). A 108 m firn/ice core was retrieved from the col of the East Rongbuk Glacier (28.03°N, 86.96°E, 6518 m a.s.l.) on the north eastern saddle of Mt. Everest in September 2002. Surface snow and the upper 3.5 m firn samples from the core were analyzed for major and trace elements by inductively coupled plasma mass spectroscopy (ICP-MS). Measurements show that crustal elements dominated both surface snow and the firn core, suggesting that Everest snow chemistry is mainly influenced by crustal aerosols from local rock or prevalent spring dust storms over southern/central Asia. There are no clear trends for element variations with elevation due to local crustal aerosol inputs or redistribution of surface snow by strong winds during the spring. Seasonal variability in snow/firn elements show that high elemental concentrations occur during the non-monsoon season and low values during the monsoon season. Ca, Cr, Cs, and Sr display the most distinct seasonal variations. Elemental concentrations (especially for heavy metals) at Mt. Everest are comparable with polar sites, generally lower than in suburban areas, and far lower than in large cities. This indicates that anthropogenic activities and heavy metal pollution have little effect on the Mt. Everest atmospheric environment. Everest firn core REE concentrations are the first reported in the region and seem to be comparable with those measured in modern and Last Glacial Maximum snow/ice samples from Greenland and Antarctica, and with precipitation samples from Japan and the East China Sea. This suggests that REE concentrations measured at Everest are representative of the background atmospheric environment.

Core sample extractor

NASA Technical Reports Server (NTRS)

Akins, James; Cobb, Billy; Hart, Steve; Leaptrotte, Jeff; Milhollin, James; Pernik, Mark

1989-01-01

The problem of retrieving and storing core samples from a hole drilled on the lunar surface is addressed. The total depth of the hole in question is 50 meters with a maximum diameter of 100 millimeters. The core sample itself has a diameter of 60 millimeters and will be two meters in length. It is therefore necessary to retrieve and store 25 core samples per hole. The design utilizes a control system that will stop the mechanism at a certain depth, a cam-linkage system that will fracture the core, and a storage system that will save and catalogue the cores to be extracted. The Rod Changer and Storage Design Group will provide the necessary tooling to get into the hole as well as to the core. The mechanical design for the cam-linkage system as well as the conceptual design of the storage device are described.

Investigating the soil removal characteristics of flexible tube coring method for lunar exploration

NASA Astrophysics Data System (ADS)

Tang, Junyue; Quan, Qiquan; Jiang, Shengyuan; Liang, Jieneng; Lu, Xiangyong; Yuan, Fengpei

2018-02-01

Compared with other technical solutions, sampling the planetary soil and returning it back to Earth may be the most direct method to seek the evidence of extraterrestrial life. To keep sample's stratification for further analyzing, a novel sampling method called flexible tube coring has been adopted for China future lunar explorations. Given the uncertain physical properties of lunar regolith, proper drilling parameters should be adjusted immediately in piercing process. Otherwise, only a small amount of core could be sampled and overload drilling faults could occur correspondingly. Due to the fact that the removed soil is inevitably connected with the cored soil, soil removal characteristics may have a great influence on both drilling loads and coring results. To comprehend the soil removal characteristics, a non-contact measurement was proposed and verified to acquire the coring and removal results accurately. Herein, further more experiments in one homogenous lunar regolith simulant were conducted, revealing that there exists a sudden core failure during the sampling process and the final coring results are determined by the penetration per revolution index. Due to the core failure, both drilling loads and soil's removal states are also affected thereby.

A Xhosa language translation of the CORE-OM using South African university student samples.

PubMed

Campbell, Megan M; Young, Charles

2016-10-01

The translation of well established psychometric tools from English into Xhosa may assist in improving access to psychological services for Xhosa speakers. The aim of this study was to translate the Clinical Outcomes in Routine Evaluation - Outcome Measure (CORE-OM), a measure of general distress and dysfunction developed in the UK, into Xhosa for use at South African university student counselling centres. The CORE-OM and embedded CORE-10 were translated into Xhosa using a five-stage translation design. This design included (a) forward-translation, (b) back-translation, (c) committee approach, (d) qualitative piloting, and (e) quantitative piloting on South African university students. Clinical and general samples were drawn from English-medium South African universities. Clinical samples were generated from university student counselling centres. General student samples were generated through random stratified cluster sampling of full-time university students. Qualitative feedback from the translation process and results from quantitative piloting of the 34-item CORE-OM English and Xhosa versions supported the reduction of the scale to 10 items. This reduced scale is referred to as the South African CORE-10 (SA CORE-10). A measurement and structural model of the SA CORE-10 English version was developed and cross-validated using an English-speaking university student sample. Equivalence of this model with the SA CORE-10 Xhosa version was investigated using a first-language Xhosa-speaking university sample. Partial measurement equivalence was achieved at the metric level. The resultant SA CORE-10 Xhosa and English versions provide core measures of distress and dysfunction. Additional, culture- and language-specific domains could be added to increase sensitivity and specificity. © The Author(s) 2016.

Changes of the Bacterial Abundance and Communities in Shallow Ice Cores from Dunde and Muztagata Glaciers, Western China

PubMed Central

Chen, Yong; Li, Xiang-Kai; Si, Jing; Wu, Guang-Jian; Tian, Li-De; Xiang, Shu-Rong

2016-01-01

In this study, six bacterial community structures were analyzed from the Dunde ice core (9.5-m-long) using 16S rRNA gene cloning library technology. Compared to the Muztagata mountain ice core (37-m-long), the Dunde ice core has different dominant community structures, with five genus-related groups Blastococcus sp./Propionibacterium, Cryobacterium-related., Flavobacterium sp., Pedobacter sp., and Polaromas sp. that are frequently found in the six tested ice layers from 1990 to 2000. Live and total microbial density patterns were examined and related to the dynamics of physical-chemical parameters, mineral particle concentrations, and stable isotopic ratios in the precipitations collected from both Muztagata and Dunde ice cores. The Muztagata ice core revealed seasonal response patterns for both live and total cell density, with high cell density occurring in the warming spring and summer months indicated by the proxy value of the stable isotopic ratios. Seasonal analysis of live cell density for the Dunde ice core was not successful due to the limitations of sampling resolution. Both ice cores showed that the cell density peaks were frequently associated with high concentrations of particles. A comparison of microbial communities in the Dunde and Muztagata glaciers showed that similar taxonomic members exist in the related ice cores, but the composition of the prevalent genus-related groups is largely different between the two geographically different glaciers. This indicates that the micro-biogeography associated with geographic differences was mainly influenced by a few dominant taxonomic groups. PMID:27847503

Metalliferous sediment and a silica-hematite deposit within the Blanco fracture zone, Northeast Pacific

USGS Publications Warehouse

Hein, J.R.; Clague, D.A.; Koski, R.A.; Embley, R.W.; Dunham, R.E.

2008-01-01

A Tiburon ROV dive within the East Blanco Depression (EBD) increased the mapped extent of a known hydrothermal field by an order of magnitude. In addition, a unique opal-CT (cristobalite-tridymite)-hematite mound was discovered, and mineralized sediments and rock were collected and analyzed. Silica-hematite mounds have not previously been found on the deep ocean floor. The light-weight rock of the porous mound consists predominantly of opal-CT and hematite filaments, rods, and strands, and averages 77.8% SiO2 and 11.8% Fe2O3. The hematite and opal-CT precipitated from a low-temperature (???115?? C), strongly oxidized, silica- and iron-rich, sulfur-poor hydrothermal fluid; a bacterial mat provided the framework for precipitation. Samples collected from a volcaniclastic rock outcrop consist primarily of quartz with lesser plagioclase, smectite, pyroxene, and sulfides; SiO2 content averages 72.5%. Formation of these quartz-rich samples is best explained by cooling in an up-flow zone of silica-rich hydrothermal fluids within a low permeability system. Opal-A, opal-CT, and quartz mineralization found in different places within the EBD hydrothermal field likely reflects decreasing silica saturation and increasing temperature of the mineralizing fluid with increasing silica crystallinity. Six push cores recovered gravel, coarse sand, and mud mineralized variously by Fe or Mn oxides, silica, and sulfides. Total rare-earth element concentrations are low for both the rock and push core samples. Ce and Eu anomalies reflect high and low temperature hydrothermal components and detrital phases. A remarkable variety of types of mineralization occur within the EBD field, yet a consistent suite of elements is enriched (relative to basalt and unmineralized cores) in all samples analyzed: Ag, Au, S, Mo, Hg, As, Sb, Sr, and U; most samples are also enriched in Cu, Pb, Cd, and Zn. On the basis of these element enrichments, the EBD hydrothermal field might best be described as a base- and precious-metal-bearing, silica-Fe-oxide-barite deposit. Such deposits are commonly spatially and temporally associated with volcanogenic massive sulfide (VMS) ores. A plot of data for pathfinder elements shows a large hot spot at the northwestern margin of the field, which may mark a region where moderate to high temperature sulfide deposits are forming at depth; further exploration of the hydrothermal field to the northwest is warranted.

Planning for the Collection and Analysis of Samples of Martian Granular Materials Potentially to be Returned by Mars Sample Return

NASA Astrophysics Data System (ADS)

Carrier, B. L.; Beaty, D. W.

2017-12-01

NASA's Mars 2020 rover is scheduled to land on Mars in 2021 and will be equipped with a sampling system capable of collecting rock cores, as well as a specialized drill bit for collecting unconsolidated granular material. A key mission objective is to collect a set of samples that have enough scientific merit to justify returning to Earth. In the case of granular materials, we would like to catalyze community discussion on what we would do with these samples if they arrived in our laboratories, as input to decision-making related to sampling the regolith. Numerous scientific objectives have been identified which could be achieved or significantly advanced via the analysis of martian rocks, "regolith," and gas samples. The term "regolith" has more than one definition, including one that is general and one that is much more specific. For the purpose of this analysis we use the term "granular materials" to encompass the most general meaning and restrict "regolith" to a subset of that. Our working taxonomy includes the following: 1) globally sourced airfall dust (dust); 2) saltation-sized particles (sand); 3) locally sourced decomposed rock (regolith); 4) crater ejecta (ejecta); and, 5) other. Analysis of martian granular materials could serve to advance our understanding areas including habitability and astrobiology, surface-atmosphere interactions, chemistry, mineralogy, geology and environmental processes. Results of these analyses would also provide input into planning for future human exploration of Mars, elucidating possible health and mechanical hazards caused by the martian surface material, as well as providing valuable information regarding available resources for ISRU and civil engineering purposes. Results would also be relevant to matters of planetary protection and ground-truthing orbital observations. We will present a preliminary analysis of the following, in order to generate community discussion and feedback on all issues relating to: What are the specific reasons (and their priorities) for collecting samples of granular materials? How do those reasons translate to sampling priorities? In what condition would these samples be expected to be received? What is our best projection of the approach by which these samples would be divided, prepared, and analyzed to achieve our objectives?

Descriptions and preliminary report on sediment cores from the southwest coastal area, Everglades National Park, Florida

USGS Publications Warehouse

Wingard, G. Lynn; Cronin, Thomas M.; Holmes, Charles W.; Willard, Debra A.; Budet, Carlos A.; Ortiz, Ruth E.

2005-01-01

Sediment cores were collected from five locations in the southwest coastal area of Everglades National Park, Florida, in May 2004 for the purpose of determining the ecosystem history of the area and the impacts of changes in flow through the Shark River Slough. An understanding of natural cycles of change prior to significant human disturbance allows land managers to set realistic performance measures and targets for salinity and other water quality and quantity quality measures. Preliminary examination of the cores indicates significant changes have taken place over the last 1000-2000 years. The cores collected from the inner bays - the most landward bays - are distinctly different from other estuarine sediment cores examined in Florida Bay and Biscayne Bay. Peats in the inner-bay cores from Big Lostmans Bay, Broad River Bay, and Tarpon Bay were deposited at least 1000 years before present (BP) based on radiocarbon analyses. The peats are overlain by poorly sorted organic muds and sands containing species indicative of deposition in a freshwater to very low salinity environment. The Alligator Bay core, the most northern inner-bay core, is almost entirely sand; no detailed faunal analyses or radiometric dating has been completed on this core. The Roberts River core, taken from the mouth of the River where it empties into Whitewater Bay, is lithologically and faunally similar to previously examined cores from Biscayne and Florida Bays; however, the basal unit was deposited ~2000 years before the present based on radiocarbon analyses. A definite trend of increasing salinity over time is seen in the Roberts River core, from sediments representing a terrestrially dominated freshwater environment at the bottom of the core to those representing an estuarine environment with a strong freshwater influence at the top. The changes seen at Roberts River could represent a combination of factors including rising sea-level and changes in freshwater supply, but the timing and extent of the changes needs to be determined. The preliminary information on the cores collected in 2004 will be combined with data from cores collected in July 2005. The 2005 cores were collected along transects moving from the inner bays out towards the coast. These transects, combining information from the 2004 and 2005 cores, will allow us to examine long term trends in freshwater supply, sea-level rise, and potentially the impact of storms on the coastal ecosystem.

Role of CT scanning in formation evaluation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bergosh, J.L.; Dibona, B.G.

1988-01-01

The use of the computerized tomographic (CT) scanner in formation evaluation of difficult to analyze core samples has moved from the research and development phase to daily, routine use in the core-analysis laboratory. The role of the CT scanner has become increasingly important as geologists try to obtain more representative core material for accurate formation evaluation. The most common problem facing the core analyst when preparing to measure petrophysical properties is the selection of representative and unaltered core samples for routine and special core testing. Recent data have shown that heterogeneous reservoir rock can be very difficult, if not impossible,more » to assess correctly when using standard core examination procedures, because many features, such as fractures, are not visible on the core surface. Another problem is the invasion of drilling mud into the core sample. Flushing formation oil and water from the core can greatly alter the saturation and distribution of fluids and lead to serious formation evaluation problems. Because the quality and usefulness of the core date are directly tied to proper sample selection, it has become imperative that the CT scanner be used whenever possible.« less

Tracking the Transformation and Preservation of Organic Biomarkers in a Varved Sediment-Core Series

NASA Astrophysics Data System (ADS)

Tolu, J.; Bigler, C.; Bindler, R.

2014-12-01

An important premise for reconstructing environmental changes using sediment records is to understand which environmental information reaches the lake bottom and how diagenetic processes may affect the proxies, such as terrestrial and aquatic organic biomarkers. We can tackle this question using a unique series of varved sediment cores collected from the lake Nylandssjön (northern Sweden). In addition to limnological and sediment trap sampling since 2001, we have a collection of freeze cores taken in late winter and stored since 1979, which allows us to track individual varve years (e.g., 1978) over time (~30 years). A previous study using this collection showed that 23 % of C and 35 % of N were lost during the first 25 years with a C:N ratio increase of ≈21, suggesting important implications for diagenetic effects on organic biomarkers. To assess the preservation/transformation of organic biomarkers, we developed a new Pyrolysis-Gas Chromatography/Mass Spectrometry method that allows the rapid determination of biomarkers from the common OM classes (e.g., plant waxes, microbial lipids, lignins) using sub-mg sample sizes and thus applicable to high-resolution sampling of the varved sediment (Tolu et al., under review). Our results show that the different biomarkers exhibit a broad spectrum of reactivities over ~30 years -% change determined by ([Peak area at t] - [Peak area at t=0])/ [peak area at t=0] x 100-. For example: 67-80 % of the algal chlorophyll-derived product 'phytene' is lost depending which single varve year is followed over time (e.g., 1979). Only 12-32 % of "pristene", the degraded form of algal chlorophyll, is lost. The guaiacyl and syringyl lignin units are affected by a smaller loss, i.e. 5-15 %, and the S/G ratio, indicative of angiosperm/gymnosperm plant input remains stable, which is contrary to previous work on non-varved lake sediments. Considering all biomarkers, the degradation/production plateaued after ~15 years, which indicates that reconstructions of changes in OM quality sedimentation can be safely done from the 15th varve without further significant changes induced by diagenesis. To reconstruct changes in OM quality within the recent 15 years, the stable biomarkers and the degradation rates of the non-stable ones have to be used. 1 Gälman et al. (2008) Limnol Oceanogr 53: 1076

Laboratory evaluation of a protocol for personal sampling of airborne particles in welding and allied processes.

PubMed

Chung, K Y; Carter, G J; Stancliffe, J D

1999-02-01

A new European/International Standard (ISOprEN 10882-1) on the sampling of airborne particulates generated during welding and allied processes has been proposed. The use of a number of samplers and sampling procedures is allowable within the defined protocol. The influence of these variables on welding fume exposures measured during welding and grinding of stainless and mild steel using the gas metal arc (GMA) and flux-cored arc (FCA) and GMA welding of aluminium has been examined. Results show that use of any of the samplers will not give significantly different measured exposures. The effect on exposure measurement of placing the samplers on either side of the head was variable; consequently, sampling position cannot be meaningfully defined. All samplers collected significant amounts of grinding dust. Therefore, gravimetric determination of welding fume exposure in atmospheres containing grinding dust will be inaccurate. The use of a new size selective sampler can, to some extent, be used to give a more accurate estimate of exposure. The reliability of fume analysis data of welding consumables has caused concern; and the reason for differences that existed between the material safety data sheet and the analysis of fume samples collected requires further investigation.

ROPEC - ROtary PErcussive Coring Drill for Mars Sample Return

NASA Technical Reports Server (NTRS)

Chu, Philip; Spring, Justin; Zacny, Kris

2014-01-01

The ROtary Percussive Coring Drill is a light weight, flight-like, five-actuator drilling system prototype designed to acquire core material from rock targets for the purposes of Mars Sample Return. In addition to producing rock cores for sample caching, the ROPEC drill can be integrated with a number of end effectors to perform functions such as rock surface abrasion, dust and debris removal, powder and regolith acquisition, and viewing of potential cores prior to caching. The ROPEC drill and its suite of end effectors have been demonstrated with a five degree of freedom Robotic Arm mounted to a mobility system with a prototype sample cache and bit storage station.

Anthropogenic contributions to atmospheric Hg, Pb and As accumulation recorded by peat cores from southern Greenland and Denmark dated using the 14C "bomb pulse curve"

NASA Astrophysics Data System (ADS)

Shotyk, W.; Goodsite, M. E.; Roos-Barraclough, F.; Frei, R.; Heinemeier, J.; Asmund, G.; Lohse, C.; Hansen, T. S.

2003-11-01

Mercury concentrations are clearly elevated in the surface and sub-surface layers of peat cores collected from a minerotrophic ("groundwater-fed") fen in southern Greenland (GL) and an ombrotrophic ("rainwater-fed") bog in Denmark (DK). Using 14C to precisely date samples since ca. AD 1950 using the "atmospheric bomb pulse," the chronology of Hg accumulation in GL is remarkably similar to the bog in DK where Hg was supplied only by atmospheric deposition: this suggests not only that Hg has been supplied to the surface layers of the minerotrophic core (GL) primarily by atmospheric inputs, but also that the peat cores have preserved a consistent record of the changing rates of atmospheric Hg accumulation. The lowest Hg fluxes in the GL core (0.3 to 0.5 μg/m 2/yr) were found in peats dating from AD 550 to AD 975, compared to the maximum of 164 μg/m 2/yr in AD 1953. Atmospheric Hg accumulation rates have since declined, with the value for 1995 (14 μg/m 2/yr) comparable to the value for 1995 obtained by published studies of atmospheric transport modelling (12 μg/m 2/yr). The greatest rates of atmospheric Hg accumulation in the DK core are also found in the sample dating from AD 1953 and are comparable in magnitude (184 μg/m 2/yr) to the GL core; again, the fluxes have since gone into strong decline. The accumulation rates recorded by the peat core for AD 1994 (14 μg/m 2/yr) are also comparable to the value for 1995 obtained by atmospheric transport modelling (18 μg/m 2/yr). Comparing the Pb/Ti and As/Ti ratios of the DK samples with the corresponding crustal ratios (or "natural background values" for preanthropogenic peat) shows that the samples dating from 1953 also contain the maximum concentration of "excess" Pb and As. The synchroneity of the enrichments of all three elements (Hg, Pb, and As) suggests a common source, with coal-burning the most likely candidate. Independent support for this interpretation was obtained from the Pb isotope data ( 206Pb/ 207Pb = 1.1481 ± 0.0002 in the leached fraction and 1.1505 ± 0.0002 in the residual fraction) which is too radiogenic to be explained in terms of gasoline lead alone, but compares well with values for U.K. coals. In contrast, the lowest values for 206Pb/ 207Pb in the DK profile (1.1370 ± 0.0003 in the leached fraction and 1.1408 ± 0.0003 in the residual fraction) are found in the sample dating from AD 1979: this shows that the maximum contribution of leaded gasoline occurred approximately 25 yr after the zenith in total anthropogenic Pb deposition.

Clinical and histologic outcomes of calcium sulfate in the treatment of postextraction sockets.

PubMed

Ruga, Emanuele; Gallesio, Cesare; Chiusa, Luigi; Boffano, Paolo

2011-03-01

The aim of this prospective study was to assess the clinical and histologic outcomes obtained with calcium sulfate (CS) used as a filler material in fresh premolar and molar postextraction sockets. Sixty premolar or molar postextraction sockets were filled with CS. Among the 60 grafted sockets, after 3 months, 50 underwent implant placement and clinical assessment. The removal of a sample core of newly generated intrasocket tissue was performed in 19 sockets. Collected samples were sent for histologic examination. The percentage of vital bone, nonvital bone, residual CS, amorphous material, and connective areas in every sample was calculated and recorded. Fifty postextraction regenerated sockets that underwent implant placement 3 months after tooth removal were included in this study.A partial postoperative exposition of the graft was observed in 12 of 50 sockets. At the surgical reentry, the augmented extraction sockets were completely filled by a hard material with an adequate alveolar crest in 41 cases. Histologic examination of the cores revealed that 63.16% of the intrasocket tissue was new vital bone, 2.1% was nonvital bone, 4.74% was fibrous tissue, and 30% was amorphous material. No residual CS was identified in bone cores. This study confirmed that CS is an ideal grafting material. The clinical adequacy aspect of filled sockets at surgical reentry seemed to be indicative of a qualitatively better bone regeneration. Postoperative exposition of graft material after a first intervention seemed to constitute an important risk factor for a worse bone regeneration.

A Database Approach for Predicting and Monitoring Baked Anode Properties

NASA Astrophysics Data System (ADS)

Lauzon-Gauthier, Julien; Duchesne, Carl; Tessier, Jayson

2012-11-01

The baked anode quality control strategy currently used by most carbon plants based on testing anode core samples in the laboratory is inadequate for facing increased raw material variability. The low core sampling rate limited by lab capacity and the common practice of reporting averaged properties based on some anode population mask a significant amount of individual anode variability. In addition, lab results are typically available a few weeks after production and the anodes are often already set in the reduction cells preventing early remedial actions when necessary. A database approach is proposed in this work to develop a soft-sensor for predicting individual baked anode properties at the end of baking cycle. A large historical database including raw material properties, process operating parameters and anode core data was collected from a modern Alcoa plant. A multivariate latent variable PLS regression method was used for analyzing the large database and building the soft-sensor model. It is shown that the general low frequency trends in most anode physical and mechanical properties driven by raw material changes are very well captured by the model. Improvements in the data infrastructure (instrumentation, sampling frequency and location) will be necessary for predicting higher frequency variations in individual baked anode properties. This paper also demonstrates how multivariate latent variable models can be interpreted against process knowledge and used for real-time process monitoring of carbon plants, and detection of faults and abnormal operation.

Measurement of unsaturated hydraulic properties and evaluation of property-transfer models for deep sedimentary interbeds, Idaho National Laboratory, Idaho

USGS Publications Warehouse

Perkins, Kimberlie; Johnson, Brittany D.; Mirus, Benjamin B.

2014-01-01

During 2013–14, the USGS, in cooperation with the U.S. Department of Energy, focused on further characterization of the sedimentary interbeds below the future site of the proposed Remote Handled Low-Level Waste (RHLLW) facility, which is intended for the long-term storage of low-level radioactive waste. Twelve core samples from the sedimentary interbeds from a borehole near the proposed facility were collected for laboratory analysis of hydraulic properties, which also allowed further testing of the property-transfer modeling approach. For each core sample, the steady-state centrifuge method was used to measure relations between matric potential, saturation, and conductivity. These laboratory measurements were compared to water-retention and unsaturated hydraulic conductivity parameters estimated using the established property-transfer models. For each core sample obtained, the agreement between measured and estimated hydraulic parameters was evaluated quantitatively using the Pearson correlation coefficient (r). The highest correlation is for saturated hydraulic conductivity (Ksat) with an r value of 0.922. The saturated water content (qsat) also exhibits a strong linear correlation with an r value of 0.892. The curve shape parameter (λ) has a value of 0.731, whereas the curve scaling parameter (yo) has the lowest r value of 0.528. The r values demonstrate that model predictions correspond well to the laboratory measured properties for most parameters, which supports the value of extending this approach for quantifying unsaturated hydraulic properties at various sites throughout INL.

Setup of an interface for operation of IAGOS (In-service Aircraft Global Observing System) CORE instruments onboard the IAGOS CARIBIC platform.

NASA Astrophysics Data System (ADS)

Bundke, Ulrich; Berg, Marcel; Franke, Harald; Zahn, Andreas; Boenisch, Harald; Perim de Faria, Julia; Berkes, Florian; Petzold, Andreas

2017-04-01

The European Research Infrastructure IAGOS (In-service Aircraft for a Global Observing System; www.iagos.org) responds to the increasing requests for long-term, routine in-situ observational data by using commercial passenger aircraft as measurement platforms. The infrastructure is built from two complementary approaches: The "CORE" component comprises the implementation and operation of autonomous instruments installed on up to 20 long-range aircraft of international airlines for continuous measurements of important reactive gases and greenhouse gases, as well as aerosol particles, dust and cloud particles. The fully automated instruments are designed for operation aboard the aircraft in unattended mode for several months and the data are transmitted automatically. The complementary "CARIBIC" component consists of the monthly deployment of a cargo container equipped with instrumentation for a larger suite of components. The CARIBIC container has equipment for measuring ozone, carbon monoxide, nitrogen oxides, water vapor and airborne particles. Furthermore the container is equipped with a system for collecting air samples. These air samples are analyzed in the laboratory. For each sample measurements for more than 40 trace gases including CFC's prohibited by the Montreal protocol, and all greenhouse gases are performed. The Interface described in this work is designed to host one of IAGOS CORE (Package2) instruments. Available are: P2a, P2b, measuring { NO_y} and {NO_x} em P2c, measuring the aerosol size-distribution (0.25

Is it really theoretical? A review of sampling in grounded theory studies in nursing journals.

PubMed

McCrae, Niall; Purssell, Edward

2016-10-01

Grounded theory is a distinct method of qualitative research, where core features are theoretical sampling and constant comparative analysis. However, inconsistent application of these activities has been observed in published studies. This review assessed the use of theoretical sampling in grounded theory studies in nursing journals. An adapted systematic review was conducted. Three leading nursing journals (2010-2014) were searched for studies stating grounded theory as the method. Sampling was assessed using a concise rating tool. A high proportion (86%) of the 134 articles described an iterative process of data collection and analysis. However, half of the studies did not demonstrate theoretical sampling, with many studies declaring or indicating a purposive sampling approach throughout. Specific reporting guidelines for grounded theory studies should be developed to ensure that study reports describe an iterative process of fieldwork and theoretical development. © 2016 John Wiley & Sons Ltd.

DOE Office of Scientific and Technical Information (OSTI.GOV)

West, Bradley M.; Stuckelberger, Michael; Guthrey, Harvey

We present that statistical and correlative analysis are increasingly important in the design and study of new materials, from semiconductors to metals. Non-destructive measurement techniques, with high spatial resolution, capable of correlating composition and/or structure with device properties, are few and far between. For the case of polycrystalline and inhomogeneous materials, the added challenge is that nanoscale resolution is in general not compatible with the large sampling areas necessary to have a statistical representation of the specimen under study. For the study of grain cores and grain boundaries in polycrystalline solar absorbers this is of particular importance since their dissimilarmore » behavior and variability throughout the samples makes it difficult to draw conclusions and ultimately optimize the material. In this study, we present a nanoscale in-operando approach based on the multimodal utilization of synchrotron nano x-ray fluorescence and x-ray beam induced current collected for grain core and grain boundary areas and correlated pixel-by-pixel in fully operational Cu(In (1-x)Ga x)Se 2 solar cells. We observe that low gallium cells have grain boundaries that over perform compared to the grain cores and high gallium cells have boundaries that under perform. In conclusion, these results demonstrate how nanoscale correlative X-ray microscopy can guide research pathways towards grain engineering low cost, high efficiency solar cells.« less