The FEBS Journal in 2016: read, reflect and don't feed the wolves.

PubMed

Martin, Seamus J

2016-01-01

Seamus Martin holds the Smurfit Chair of Medical Genetics at the Smurfit Institute of Genetics, Trinity College Dublin, Ireland. He obtained his PhD with Tom Cotter at the National University of Ireland, followed by post-doctoral fellowships with Ivan Roitt at UCL, London, UK, and Doug Green at The La Jolla Institute for Allergy and Immunology, California, USA. He works on all aspects of cell death control and is especially interested in the links between apoptosis, necrosis and inflammation. He received the GlaxoSmithKline Award of The Biochemical Society for his work on unravelling the caspase activation cascade and was elected to the Royal Irish Academy in 2006 and EMBO in 2009. He has been the Editor-in-Chief of The FEBS Journal since 2014. © 2015 FEBS.

Cosmic Ray Acceleration from Multiple Galactic Wind Shocks

NASA Astrophysics Data System (ADS)

Cotter, Cory; Bustard, Chad; Zweibel, Ellen

2018-01-01

Cosmic rays still have an unknown origin. Many mechanisms have been suggested for their acceleration including quasars, pulsars, magnetars, supernovae, supernova remnants, and galactic termination shocks. The source of acceleration may be a mixture of these and a different mixture in different energy regimes. Using numerical simulations, we investigate multiple shocks in galactic winds as potential cosmic rays sources. By having shocks closer to the parent galaxy, more particles may diffuse back to the disk instead of being blown out in the wind, as found in Bustard, Zweibel, and Cotter (2017, ApJ) and also Merten, Bustard, Zweibel, and Tjus (to be submitted to ApJ). Specifically, this flux of cosmic rays could contribute to the unexplained "shin" region between the well-known "knee" and "ankle" of the cosmic ray spectrum. We would like to acknowledge support from the National Science Foundation (NSF) Graduate Research Fellowship Program under grant No. DGE-125625 and NSF grant No. AST-1616037.

The influence of autocorrelation in signature extraction: An example from a geobotanical investigation of Cotter Basin, Montana

NASA Technical Reports Server (NTRS)

Labovitz, M. L.; Masuoka, E. J. (Principal Investigator)

1981-01-01

The presence of positive serial correlation (autocorrelation) in remotely sensed data results in an underestimate of the variance-covariance matrix when calculated using contiguous pixels. This underestimate produces an inflation in F statistics. For a set of Thematic Mapper Simulator data (TMS), used to test the ability to discriminate a known geobotanical anomaly from its background, the inflation in F statistics related to serial correlation is between 7 and 70 times. This means that significance tests of means of the spectral bands initially appear to suggest that the anomalous site is very different in spectral reflectance and emittance from its background sites. However, this difference often disappears and is always dramatically reduced when compared to frequency distributions of test statistics produced by the comparison of simulated training sets possessing equal means, but which are composed of autocorrelated observations.

Detection of hidden mineral deposits by airborne spectral analysis of forest canopies. [Spirit Lake, Washington; Catheart Mountain, Maine; Blacktail Mountain, Montana; and Cotter Basin, Montana

NASA Technical Reports Server (NTRS)

Collins, W.; Chang, S. H.; Kuo, J. T.

1984-01-01

Data from field surveys and biogeochemical tests conducted in Maine, Montana, and Washington strongly correlate with results obtained using high resolution airborne spectroradiometer which detects an anomalous spectral waveform that appears definitely associated with sulfide mineralization. The spectral region most affected by mineral stress is between 550 nm and 750 nm. Spectral variations observed in the field occur on the wings of the red chlorophyll band centered at about 690 nm. The metal-stress-induced variations on the absorption band wing are most successfully resolved in the high spectral resolution field data using a waveform analysis technique. The development of chlorophyll pigments was retarded in greenhouse plants doped with copper and zinc in the laboratory. The lowered chlorophyll production resulted in changes on the wings of the chlorophyll bands of reflectance spectra of the plants. The airborne spectroradiometer system and waveform analysis remains the most sensitive technique for biogeochemical surveys.

NCCA 2010 Water

EPA Pesticide Factsheets

Data from the National Aquatic Resource Surveys: The following data are available for download as comma separated values (.csv) files. Sort the table using the pull down menus or headers to more easily locate the data. Right click on the file name and select Save Link As to save the file to your computer. Make sure to also download the companion metadata file (.txt) for the list of field labels. See the survey technical document for more information on the data analyses.This dataset is associated with the following publications:Yurista , P., J. Kelly , and J. Scharold. Great Lakes nearshore-offshore: Distinct water quality regions. JOURNAL OF GREAT LAKES RESEARCH. International Association for Great Lakes Research, Ann Arbor, MI, USA, 42: 375-385, (2016).Kelly , J., P. Yurista , M. Starry, J. Scharold , W. Bartsch , and A. Cotter. The first US National Coastal Condition Assessment survey in the Great Lakes: Development of the GIS frame and exploration of spatial variation in nearshore water quality results. JOURNAL OF GREAT LAKES RESEARCH. International Association for Great Lakes Research, Ann Arbor, MI, USA, 41: 1060-1074, (2015).

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eldred, Christopher; Randall, David

The shallow water equations provide a useful analogue of the fully compressible Euler equations since they have similar characteristics: conservation laws, inertia-gravity and Rossby waves, and a (quasi-) balanced state. In order to obtain realistic simulation results, it is desirable that numerical models have discrete analogues of these properties. Two prototypical examples of such schemes are the 1981 Arakawa and Lamb (AL81) C-grid total energy and potential enstrophy conserving scheme, and the 2007 Salmon (S07) Z-grid total energy and potential enstrophy conserving scheme. Unfortunately, the AL81 scheme is restricted to logically square, orthogonal grids, and the S07 scheme is restrictedmore » to uniform square grids. The current work extends the AL81 scheme to arbitrary non-orthogonal polygonal grids and the S07 scheme to arbitrary orthogonal spherical polygonal grids in a manner that allows for both total energy and potential enstrophy conservation, by combining Hamiltonian methods (work done by Salmon, Gassmann, Dubos, and others) and discrete exterior calculus (Thuburn, Cotter, Dubos, Ringler, Skamarock, Klemp, and others). Lastly, detailed results of the schemes applied to standard test cases are deferred to part 2 of this series of papers.« less

Total energy and potential enstrophy conserving schemes for the shallow water equations using Hamiltonian methods - Part 1: Derivation and properties

NASA Astrophysics Data System (ADS)

Eldred, Christopher; Randall, David

2017-02-01

The shallow water equations provide a useful analogue of the fully compressible Euler equations since they have similar characteristics: conservation laws, inertia-gravity and Rossby waves, and a (quasi-) balanced state. In order to obtain realistic simulation results, it is desirable that numerical models have discrete analogues of these properties. Two prototypical examples of such schemes are the 1981 Arakawa and Lamb (AL81) C-grid total energy and potential enstrophy conserving scheme, and the 2007 Salmon (S07) Z-grid total energy and potential enstrophy conserving scheme. Unfortunately, the AL81 scheme is restricted to logically square, orthogonal grids, and the S07 scheme is restricted to uniform square grids. The current work extends the AL81 scheme to arbitrary non-orthogonal polygonal grids and the S07 scheme to arbitrary orthogonal spherical polygonal grids in a manner that allows for both total energy and potential enstrophy conservation, by combining Hamiltonian methods (work done by Salmon, Gassmann, Dubos, and others) and discrete exterior calculus (Thuburn, Cotter, Dubos, Ringler, Skamarock, Klemp, and others). Detailed results of the schemes applied to standard test cases are deferred to part 2 of this series of papers.

Total energy and potential enstrophy conserving schemes for the shallow water equations using Hamiltonian methods $-$ Part 1: Derivation and properties

DOE PAGES

Eldred, Christopher; Randall, David

2017-02-17

The shallow water equations provide a useful analogue of the fully compressible Euler equations since they have similar characteristics: conservation laws, inertia-gravity and Rossby waves, and a (quasi-) balanced state. In order to obtain realistic simulation results, it is desirable that numerical models have discrete analogues of these properties. Two prototypical examples of such schemes are the 1981 Arakawa and Lamb (AL81) C-grid total energy and potential enstrophy conserving scheme, and the 2007 Salmon (S07) Z-grid total energy and potential enstrophy conserving scheme. Unfortunately, the AL81 scheme is restricted to logically square, orthogonal grids, and the S07 scheme is restrictedmore » to uniform square grids. The current work extends the AL81 scheme to arbitrary non-orthogonal polygonal grids and the S07 scheme to arbitrary orthogonal spherical polygonal grids in a manner that allows for both total energy and potential enstrophy conservation, by combining Hamiltonian methods (work done by Salmon, Gassmann, Dubos, and others) and discrete exterior calculus (Thuburn, Cotter, Dubos, Ringler, Skamarock, Klemp, and others). Lastly, detailed results of the schemes applied to standard test cases are deferred to part 2 of this series of papers.« less

Ordovician of the Sauk megasequence in the Ozark region of northern Arkansas and parts of Missouri and adjacent states: Chapter 11

USGS Publications Warehouse

Ethington, Raymond L.; Repetski, John E.; Derby, James R.

2012-01-01

The oldest formation that crops out in the region is the Jefferson City Dolomite, which may be present in outcrops along incised river valleys near the Missouri-Arkansas border. Rare fossil gastropods, bivalves, brachiopods, conodonts, and trilobites permit correlation of the Cotter through Powell Dolomites with Ibexian strata elsewhere in Laurentia. Conodonts in the Black Rock Limestone Member of the Smithville Formation and the upper part of the Powell Dolomite confirm regional relationships that have been suggested for these units; those of the Black Rock Limestone Member are consistent with deposition under more open marine conditions than existed when older and younger units were forming. Brachiopods and conodonts from the overlying Everton Formation assist in interpreting complex facies within that formation and its correlation to equivalent rocks elsewhere. The youngest conodonts in the Everton Formation provide an age limit for the Sauk-Tippecanoe unconformity near the southern extremity of the great American carbonate bank. The correlation to coeval strata in the Ouachita Mountains of central Arkansas and in the Arbuckle Mountains of Oklahoma and to rocks penetrated in wells drilled in the Reelfoot rift basin has been improved greatly in recent years by integration of biostratigraphic data with lithologic information.

Historical land-use influences the long-term stream turbidity response to a wildfire.

PubMed

Harrison, Evan T; Dyer, Fiona; Wright, Daniel W; Levings, Chris

2014-02-01

Wildfires commonly result in an increase in stream turbidity. However, the influence of pre-fire land-use practices on post-fire stream turbidity is not well understood. The Lower Cotter Catchment (LCC) in south-eastern Australia is part of the main water supply catchment for Canberra with land in the catchment historically managed for a mix of conservation (native eucalypt forest) and pine (Pinus radiata) plantation. In January 2003, wildfires burned almost all of the native and pine forests in the LCC. A study was established in 2005 to determine stream post-fire turbidity recovery within the native and pine forest areas of the catchment. Turbidity data loggers were deployed in two creeks within burned native forest and burned pine forest areas to determine turbidity response to fire in these areas. As a part of the study, we also determined changes in bare soil in the native and pine forest areas since the fire. The results suggest that the time, it takes turbidity levels to decrease following wildfire, is dependent upon the preceding land-use. In the LCC, turbidity levels decreased more rapidly in areas previously with native vegetation compared to areas which were previously used for pine forestry. This is likely because of a higher percentage of bare soil areas for a longer period of time in the ex-pine forest estate and instream stores of fine sediment from catchment erosion during post-fire storm events. The results of our study show that the previous land-use may exert considerable control over on-going turbidity levels following a wildfire.

Linear and nonlinear properties of numerical methods for the rotating shallow water equations

NASA Astrophysics Data System (ADS)

Eldred, Chris

The shallow water equations provide a useful analogue of the fully compressible Euler equations since they have similar conservation laws, many of the same types of waves and a similar (quasi-) balanced state. It is desirable that numerical models posses similar properties, and the prototypical example of such a scheme is the 1981 Arakawa and Lamb (AL81) staggered (C-grid) total energy and potential enstrophy conserving scheme, based on the vector invariant form of the continuous equations. However, this scheme is restricted to a subset of logically square, orthogonal grids. The current work extends the AL81 scheme to arbitrary non-orthogonal polygonal grids, by combining Hamiltonian methods (work done by Salmon, Gassmann, Dubos and others) and Discrete Exterior Calculus (Thuburn, Cotter, Dubos, Ringler, Skamarock, Klemp and others). It is also possible to obtain these properties (along with arguably superior wave dispersion properties) through the use of a collocated (Z-grid) scheme based on the vorticity-divergence form of the continuous equations. Unfortunately, existing examples of these schemes in the literature for general, spherical grids either contain computational modes; or do not conserve total energy and potential enstrophy. This dissertation extends an existing scheme for planar grids to spherical grids, through the use of Nambu brackets (as pioneered by Rick Salmon). To compare these two schemes, the linear modes (balanced states, stationary modes and propagating modes; with and without dissipation) are examined on both uniform planar grids (square, hexagonal) and quasi-uniform spherical grids (geodesic, cubed-sphere). In addition to evaluating the linear modes, the results of the two schemes applied to a set of standard shallow water test cases and a recently developed forced-dissipative turbulence test case from John Thuburn (intended to evaluate the ability the suitability of schemes as the basis for a climate model) on both hexagonal-pentagonal icosahedral grids and cubed-sphere grids are presented. Finally, some remarks and thoughts about the suitability of these two schemes as the basis for atmospheric dynamical development are given.

Preservice teachers' use of lesson study in teaching nature of science

NASA Astrophysics Data System (ADS)

McDowell, Amy Virginia

The purpose of this study was to explore preservice teachers' lived experiences in a lesson study focused on teaching and learning nature of science (NOS). The body of knowledge about shifting pre- and in-service novice NOS understandings is substantial. The focus of science education research is now exploring ways to move these informed NOS understandings into classroom practice (Abd-El-Khalick & Lederman, 2000b). The research questions guiding the study were (a) how do preservice teachers' understandings of NOS shift as a result of the lesson study experience?, and (b) how does the reflective practice that occurs in lesson study influence preservice teachers' transition of NOS tenets into classroom practice? The participants in this study represented a sample of graduate preservice teachers, who were part of a middle and secondary science teaching alternative certification program in a southeastern university. In the first summer semester of this certification program, the participants were immersed in reform based science instruction; a section of which included NOS teachings (INTASC, 2002). In the following semester, participants were placed in a practicum setting; where the exploration of the preservice teachers' teaching of NOS was supported through the modified lesson study framework. Data sources included the Views on Nature of Science-Form B (VNOS-b), interviews, and lesson study portfolios. Analysis of NOS understandings was guided by instruments found in literature associated with the VNOS-b (Lederman et al., 2002) and reflection (Ward & McCotter, 2004). Results showed successful transfer of NOS into classroom practice using the modified lesson study framework, with less success in the deepening of participants' NOS understandings. Of particular significance was that results indicated a deepening of NOS pedagogical content knowledge for those participants functioning at higher levels of reflection. The study's results contributes to two knowledge bases. First it provides insight to how lesson study can be used in the United States in alterative teacher preparation programs. Second, it contributes to what is understood about how to support the transition of NOS understandings into classroom practice.

Ratings of Perceived Exertion During Acute Resistance Exercise Performed at Imposed and Self-Selected Loads in Recreationally Trained Women.

PubMed

Cotter, Joshua A; Garver, Matthew J; Dinyer, Taylor K; Fairman, Ciaran M; Focht, Brian C

2017-08-01

Cotter, JA, Garver, MJ, Dinyer, TK, Fairman, CM, and Focht, BC. Ratings of perceived exertion during acute resistance exercise performed at imposed and self-selected loads in recreationally trained women. J Strength Cond Res 31(8): 2313-2318, 2017-Resistance exercise (RE) is commonly used to elicit skeletal muscle adaptation. Relative intensity of a training load links closely with the outcomes of regular RE. This study examined the rating of perceived exertion (RPE) responses to acute bouts of RE using imposed (40% and 70% of 1 repetition maximum [1RM]) and self-selected (SS) loads in recreationally trained women. Twenty physically active women (23.15 ± 2.92 years), who reported regular RE training of at least 3 weekly sessions for the past year, volunteered to participate. During the initial visit, participants completed 1RM testing on 4 exercises in the following order: leg extension, chest press, leg curl, and lat pull-down. On subsequent visits, the same exercises were completed at the SS or imposed loads. The RPE was assessed after the completion of each set of exercises during the 3 RE conditions using the Borg-15 category scale. Self-selected loads corresponded to an average of approximately 57%1RM (±7.62). Overall, RPE increased with load (40%1RM = 11.26 [±1.95]; SS 57%1RM = 13.94 [±1.58]; and, 70%1RM = 15.52 [±2.05]). Reflecting the linear pattern found between load and perceived effort, the present data provide evidence that RPE levels less than 15 likely equate to loads which are not consistent with contemporary American College of Sports Medicine (ACSM) guidelines for enhancing musculoskeletal health which includes strength and hypertrophy. Women desiring increases in strength and lean mass likely need to train at an exertion level at or surpassing a rating of 15 on the Borg-15 category. This article examined the modification of training load on perceived exertion, but other variables, such as the number of repetitions completed, may also be targeted to achieve a desired RPE. The primary understanding is that women who engage in RE may not self-select loads that are consistent with the ACSM recommendations for musculoskeletal health.

Stratigraphic Framework and Depositional Sequences in the Lower Silurian Regional Oil and Gas Accumulation, Appalachian Basin: From Licking County, Ohio, to Fayette County, West Virginia

USGS Publications Warehouse

Ryder, Robert T.

2006-01-01

The Lower Silurian regional oil and gas accumulation was named by Ryder and Zagorski (2003) for a 400-mile (mi)-long by 200-mi-wide hydrocarbon accumulation in the central Appalachian basin of the Eastern United States and Ontario, Canada. From the early 1880s to 2000, approximately 300 to 400 million barrels of oil and eight to nine trillion cubic feet of gas have been produced from the Lower Silurian regional oil and gas accumulation (Miller, 1975; McCormac and others, 1996; Harper and others, 1999). Dominant reservoirs in the regional accumulation are the Lower Silurian 'Clinton' and Medina sandstones in Ohio and westernmost West Virginia and coeval rocks in the Lower Silurian Medina Group (Grimsby Sandstone (Formation) and Whirlpool Sandstone) in northwestern Pennsylvania and western New York. A secondary reservoir is the Upper Ordovician(?) and Lower Silurian Tuscarora Sandstone in central Pennsylvania and central West Virginia, a more proximal eastern facies of the 'Clinton' sandstone and Medina Group (Yeakel, 1962; Cotter, 1982, 1983; Castle, 1998). The Lower Silurian regional oil and gas accumulation is subdivided by Ryder and Zagorski (2003) into the following three parts: (1) an easternmost part consisting of local gas-bearing sandstone units in the Tuscarora Sandstone that is included with the basin-center accumulation; (2) an eastern part consisting predominantly of gas-bearing 'Clinton' sandstone-Medina Group sandstones that have many characteristics of a basin-center accumulation (Davis, 1984; Zagorski, 1988, 1991; Law and Spencer, 1993); and (3) a western part consisting of oil- and gas-bearing 'Clinton' sandstone-Medina Group sandstones that is a conventional accumulation with hybrid features of a basin-center accumulation (Zagorski, 1999). With the notable exception of the offshore part of Lake Erie (de Witt, 1993), the supply of oil and (or) gas in the hybrid-conventional part of the regional accumulation continues to decline because of the many wells drilled there since the late 1880s. However, new gas and local oil continues to be discovered in the deeper basin-center part (Zagorski, 1991; Pees, 1994; Petroleum Information Corporation, 1994). In general, only small quantities of gas have been produced from the Tuscarora Sandstone fields because of their generally poor reservoir quality and because of the low energy (Btu) content of the gas (Avary, 1996). Although fracture porosity is the dominant porosity type in the Tuscarora Sandstone gas reservoirs (Avary, 1996), there are several fields, such as Indian Creek, where intergranular porosity seems to be important (Bruner, 1983; Castle and Byrnes, 2005). In order to better understand the character and origin of the Lower Silurian regional oil and gas accumulation and its component parts, six cross sections were drawn through the Lower Silurian strata in parts of New York, Ohio, Pennsylvania, and West Virginia. The locations of all six cross sections are shown on sheet 2 (figs. 1 and 2) of this report. Each cross section shows the stratigraphic framework, depositional setting, sequence stratigraphy, and hydrocarbon-producing intervals of the Lower Silurian sandstone reservoirs and adjoining strata. Cross section F-F' presented here is about 215 mi long and trends northwestward, approximately normal to the depositional strike of the Lower Silurian sandstone system, and extends through large stretches of the basin-center and hybrid-conventional parts of the Lower Silurian regional oil and gas accumulation.

Long-term impact of bottom trawling on pelagic-benthic coupling in the southern North Sea (German Bight)

NASA Astrophysics Data System (ADS)

Friedrich, Jana; van Beusekom, Justus E. E.; Neumann, Andreas; Naderipour, Celine; Janssen, Felix; Ahmerkamp, Soeren; Holtappels, Moritz; Schueckel, Ulrike

2016-04-01

The southern North Sea, and the German Bight, has been systematically bottom-trawled at least since the late 19th century (Christiansen, 2009; Reiss et al., 2009; Kröncke 2011; Emeis et al., 2015, Neumann et al., 2016). As a result, benthic habitats and benthic biogenic structures created by bivalves, polychaetes and hydroids where destroyed or reduced. The parallel removal of hard substrate (gravel and boulders) avoids the resettlement of hard-substrate depended species. For example, the Oyster ground, a huge oyster bank a hundred years ago (Olsen, 1883), turned into a muddy depression today. In addition, shallow depth of max 40 m, strong tidal currents and frequent storms result in a high-energy environment with low sedimentation rates and recurrent sediment resuspension. The decrease in benthic filtering capacity by disturbance in epifauna and bottom roughness (Callaway et al., 2007) apparently influence pelagic-benthic coupling of biogeochemical fluxes. Heip et al. (1995) indicate that benthic respiration at depths prevailing in the German Bight accounts for 10-40% of total respiration, whereas pelagic respiration accounts for 60-90%. Previous estimates are in the middle of this range (Heip et al., 1995). To test these hypotheses and to assess the partitioning of benthic and pelagic processes, and the factors influencing organic matter mineralization, we measured pelagic production and respiration based on Winkler titration, in-situ benthic fluxes using chamber landers, we did ex-situ incubations of intact sediment cores and analysed still images from a towed benthic video sled. In addition, O2 fluxes in permeable sediments were estimated by integrating the volumetric rate measurements of the upper sediment layer over in-situ microsensor-measured O2 penetration depth. Our current results show significant seasonality in benthic respiration, with highest rates in summer and lowest rates in winter. No significant differences in total benthic respiration rates were measured on sandy (permeable) and silty (diffusive) sediments, whereas significant differences of microbial O2 uptake were observed indeed between permeable and diffusive sediments. Nevertheless, when considering the multitude of different methods, we found that benthic respiration over the season seemed to be governed mainly by settling of fresh organic matter during calm periods and its rapid turnover in a region where strong tidal and wind-forced currents distribute suspended particles over large areas. Summer pelagic respiration rates were an order of magnitude higher then benthic rates, and account for 88-93% of total respiration, which represents 79-98% of pelagic primary production. Our measurements of benthic respiration account for 7-12% of the total in the German Bight, which is lower compared to earlier studies. Strong tidal and wind-forced currents along with the lack of complex three-dimensional biogenic structures seem to prevent settling of suspended matter and foster resuspension, thereby supporting pelagic turnover processes. Hence, we assume that benthic turnover might have been higher before systematic bottom trawling destroyed the bottom hydrobiological regime. Today, due to the strong current regime in the German Bight, the pelagic system appears to be a largely closed system of production and respiration, with comparably little for export to the benthic system due to absence of biogenic structures. References Callaway R, Engelhard GH, Dann J, Cotter J, Rumohr H (2007) One century of North Sea epibenthos and fishing: comparison between 1902-1912, 1982-1985 and 2000. Marine Ecology Progress Series 346, 27-43. Christiansen S (2009) Towards good environmental status - A network of marine protected areas for the North Sea. In: Lutter S (ed) WWF Germany, Fankfurt/Main Emeis K-C, van Beusekom J, Callies U, Ebinghaus R, Kannen A, Kraus G, Kröncke I, Lenhart H, Lorkowski I, Matthias V, Möllmann C, Pätsch J, Scharfe M, Thomas H, Weisse R, Zorita E (2015) The North Sea -A shelf sea in the Anthropocene. Journal of Marine Systems 141:18-33 Heip CHR, Goosen NK, Herman PMJ, Kromkamp J, Middelburg JJ, Soetaerd K (1995) Production and consumption of biological particles in temperate tidal estuaries. Oceanography and Marine Biology: an Annual Review 33:1-149 Kröncke I (2011) Changes in Dogger Bank macrofauna communities in the 20th century caused by fishing and climate. Estuarine, Coastal and Shelf Sciences 94 (3): 234-245. Neumann H, Diekmann R, Kröncke I (2016) The influence of habitat characteristics and fishing effort on functional composition of epifauna in the south-eastern North Sea. Estuarine, Coastal and Shelf Sciences 169: 182-194. Olsen OT (1883) The Piscatorial Atlas of the North Sea, English and St. George's Channels. Taylor and Francis, London Reiss H, Greenstreet S, Sieben K, Ehrich S, Piet G, Quirijns F, Robinson F, Wolff W, Kröncke I (2009) Effects of fishing disturbance on benthic communities and secondary production within an intensively fished area. Marine Ecology Progress Series 394:201-213

Planetary Protection Bioburden Analysis Program

NASA Technical Reports Server (NTRS)

Beaudet, Robert A.

2013-01-01

This program is a Microsoft Access program that performed statistical analysis of the colony counts from assays performed on the Mars Science Laboratory (MSL) spacecraft to determine the bioburden density, 3-sigma biodensity, and the total bioburdens required for the MSL prelaunch reports. It also contains numerous tools that report the data in various ways to simplify the reports required. The program performs all the calculations directly in the MS Access program. Prior to this development, the data was exported to large Excel files that had to be cut and pasted to provide the desired results. The program contains a main menu and a number of submenus. Analyses can be performed by using either all the assays, or only the accountable assays that will be used in the final analysis. There are three options on the first menu: either calculate using (1) the old MER (Mars Exploration Rover) statistics, (2) the MSL statistics for all the assays, or This software implements penetration limit equations for common micrometeoroid and orbital debris (MMOD) shield configurations, windows, and thermal protection systems. Allowable MMOD risk is formulated in terms of the probability of penetration (PNP) of the spacecraft pressure hull. For calculating the risk, spacecraft geometry models, mission profiles, debris environment models, and penetration limit equations for installed shielding configurations are required. Risk assessment software such as NASA's BUMPERII is used to calculate mission PNP; however, they are unsuitable for use in shield design and preliminary analysis studies. The software defines a single equation for the design and performance evaluation of common MMOD shielding configurations, windows, and thermal protection systems, along with a description of their validity range and guidelines for their application. Recommendations are based on preliminary reviews of fundamental assumptions, and accuracy in predicting experimental impact test results. The software is programmed in Visual Basic for Applications for installation as a simple add-in for Microsoft Excel. The user is directed to a graphical user interface (GUI) that requires user inputs and provides solutions directly in Microsoft Excel workbooks. This work was done by Shannon Ryan of the USRA Lunar and Planetary Institute for Johnson Space Center. Further information is contained in a TSP (see page 1). MSC- 24582-1 Micrometeoroid and Orbital Debris (MMOD) Shield Ballistic Limit Analysis Program Lyndon B. Johnson Space Center, Houston, Texas Commercially, because it is so generic, Enigma can be used for almost any project that requires engineering visualization, model building, or animation. Models in Enigma can be exported to many other formats for use in other applications as well. Educationally, Enigma is being used to allow university students to visualize robotic algorithms in a simulation mode before using them with actual hardware. This work was done by David Shores and Sharon P. Goza of Johnson Space Center; Cheyenne McKeegan, Rick Easley, Janet Way, and Shonn Everett of MEI Technologies; Mark Manning of PTI; and Mark Guerra, Ray Kraesig, and William Leu of Tietronix Software, Inc. For further information, contact the JSC Innovation Partnerships Office at (281) 483-3809. MSC-24211-1 Spitzer Telemetry Processing System NASA's Jet Propulsion Laboratory, Pasadena, California The Spitzer Telemetry Processing System (SirtfTlmProc) was designed to address objectives of JPL's Multi-mission Image Processing Lab (MIPL) in processing spacecraft telemetry and distributing the resulting data to the science community. To minimize costs and maximize operability, the software design focused on automated error recovery, performance, and information management. The system processes telemetry from the Spitzer spacecraft and delivers Level 0 products to the Spitzer Science Center. SirtfTlmProc is a unique system with automated error notification and recovery, with a real-time continuous service that can go quiescent after periods of inactivity. The software can process 2 GB of telemetry and deliver Level 0 science products to the end user in four hours. It provides analysis tools so the operator can manage the system and troubleshoot problems. It automates telemetry processing in order to reduce staffing costs. This work was done by Alice Stanboli, Elmain M. Martinez, and James M. McAuley of Caltech for NASA's Jet Propulsion Laboratory. For more information, contact iaoffice @jpl.nasa.gov. This software is available for commercial licensing. Please contact Dan Broderick at Daniel.F. Broderick@jpl.nasa.gov. Refer to NPO-47803. NASA Tech Briefs, September 2013 29 This rapid response computer program predicts Orbiter Wing Leading Edge (WLE) damage caused by ice or foam impact during a Space Shuttle launch (Program "IMPACT2"). The program was developed after the Columbia accident in order to assess quickly WLE damage due to ice, foam, or metal impact (if any) during a Shuttle launch. IMPACT2 simulates an impact event in a few minutes for foam impactors, and in seconds for ice and metal impactors. The damage criterion is derived from results obtained from one sophisticated commercial program, which requires hours to carry out simulations of the same impact events. The program was designed to run much faster than the commercial program with prediction of projectile threshold velocities within 10 to 15% of commercial-program values. The mathematical model involves coupling of Orbiter wing normal modes of vibration to nonlinear or linear springmass models. IMPACT2 solves nonlinear or linear impact problems using classical normal modes of vibration of a target, and nonlinear/ linear time-domain equations for the projectile. Impact loads and stresses developed in the target are computed as functions of time. This model is novel because of its speed of execution. A typical model of foam, or other projectile characterized by material nonlinearities, impacting an RCC panel is executed in minutes instead of hours needed by the commercial programs. Target damage due to impact can be assessed quickly, provided that target vibration modes and allowable stress are known. This work was done by Robert Clark, Jr., Paul Cotter, and Constantine Michalopoulos of The Boeing Company for Johnson Space Center. For further information, contact the JSC Innovation Partnerships Office at (281) 483-3809. MSC-24988-1 Wing Leading Edge RCC Rapid Response Damage Prediction Tool (IMPACT2) Lyndon B. Johnson Space Center, Houston, Texas (3) the MSL statistics for only the accountable assays. Other options on the main menu include a data editing form and utility programs that produce various reports requested by the microbiologists and the project, and tools to generate the groupings for the final analyses. The analyses can be carried out in three ways: Each assay can be treated separately, the assays can be collectively treated for the whole zone as a group, or the assays can be collected in groups designated by the JPL Planetary Protection Manager. The latter approach was used to generate the final report because assays on the same equipment or similar equipment can be assumed to have been exposed to the same environment and cleaning. Thus, the statistics are improved by having a larger population, thereby reducing the standard deviation by the square root of N. For each method mentioned above, three reports are available. The first is a detailed report including all the data. This version was very useful in verifying the calculations. The second is a brief report that is similar to the full detailed report, but does not print out the data. The third is a grand total and summary report in which each assay requires only one line. For the first and second reports, most of the calculations are performed in the report section itself. For the third, all the calculations are performed directly in the query bound to the report. All the numeric al results were verified by comparing them with Excel templates, then exporting the data from the Planetary Protection Analysis program to Excel.

The impact of knowledge on attitudes of emergency department staff towards patients with substance related presentations: a quantitative systematic review protocol.

PubMed

Clarke, Diana E; Gonzalez, Miriam; Pereira, Asha; Boyce-Gaudreau, Krystal; Waldman, Celeste; Demczuk, Lisa

2015-10-01

University of Manitoba and Queens Joanna Briggs Collaboration for Patient Safety: a Collaborating Center of the Joanna Briggs Institute The overall objective of this systematic review is to synthesize the available evidence on the relationship between new knowledge (gained through educational interventions about substance use/abuse) and health care providers' attitudes (measured by well validated instruments such as the Drug and Drug Problems Perceptions Questionnaire [DDPPQ], the Short Alcohol and Alcohol Problems Perception Questionnaire [SAAPPQ], etc.) towards patients with substance-related presentations to emergency departments.The specific review question is: Among emergency department staff, does the acquisition of knowledge (on educational interventions about substance use) impact attitudes in relation to their therapeutic role towards patients with substance-related presentations? Substance-related emergency department (ED) visits are common worldwide. Estimates of cases with alcohol involvement presenting to the ED range from 6% to 45%. Research conducted in the UK and Australia suggests that presentations related to illicit drug use are common and have increased in recent years.In 2012, an estimated six million Canadians met the criteria for substance use disorder; alcohol was the most common substance of abuse followed by cannabis and other drugs. The relationship between substance use and physical injury is well documented. The risk of mortality is increased by the side effects of substances on users involved in accidents and trauma. Not surprisingly, substance-related ED visits have been on the rise. Although only 3 to 10% of overall visits are typically related to a primary entrance complaint of drug or alcohol use or abuse, studies estimate that up to 35% of ED visits may be directly or indirectly substance related. These reasons may range from injury resulting from accidents or violence to substance-related illnesses.Health care providers (i.e., typically medical and nursing staff) have often perceived substance using patients as a challenging group to manage and as adding to the workload of already busy staff. The challenges of providing care to this patient population may be attributed to: (1) the chaotic ED environment, (2) health care providers' lack of knowledge, experience or skill in identifying and addressing substance misuse, (3) health care providers' lack of support structures such as sufficient time, staff and resources in working with this population, (4) health care providers' negative attitudes towards this patient population, (5) unpleasant tasks (i.e. intoxicated patients who urinate on themselves) associated with care delivery to this patient population, (6) patients' aggressive or violent behavior, and (7) patients' lack of motivation to change.Health care providers' attitudes towards patients with substance use problems have been found to affect health care delivery. This is of concern given the research findings that suggest they generally hold negative attitudes towards this patient population. For instance, in their study of nurses' attitudes towards patients who use illicit drugs, Ford, Bammer and Becker found that only 15% of nurses gained satisfaction from caring for these patients and only 30% were motivated to care for this patient group. Researchers who have examined substance using patients' experiences accessing health care also point to the suboptimal attitudes of health care providers towards this patient population. In the Neale, Tompkins and Sheard study of the barriers encountered by injecting drug users when accessing health and social care services, injecting drug users reported that they were often treated poorly or differently from other patients (i.e. sent home prematurely, not given appropriate aftercare or discharge), and made them feel not worthy of receiving help. Although the evidence relating to health care providers' attitudes toward substance using patients comes primarily from studies conducted in mental health or primary care settings, researchers who have examined ED staff attitudes towards this patient population paint a similar picture. For instance, Camilli & Martin's review of ED nurses' attitudes toward intoxicated and psychiatric patients suggests that nurses are often frustrated when it comes to these patients as they are time consuming and offer repeat business to the ED. An ethnographic study of care delivery in an ED also points to the negative attitudes of ED staff towards this patient group. Henderson, Stacey and Dohan found that ED providers had interactions with substance using patients that may be considered excluding, rejecting or de-valuing, that is, in observations and interviews, providers often spoke of this patient population as abusing the system, overusing system resources, and not caring about their own health care. Other negative attitudes of ED staff towards substance using patients found in the literature pertain to: (1) being reluctant to ask patients about substance use, (2) believing little can be done in EDs to help these patients, (2) feeling angry or professionally dissatisfied when treating this patient group, (4) lacking a sense of responsibility for referring to specialist treatment, and (5) believing patients lack motivation to change following interaction with medical staff.Although there is considerable evidence that indicates health care providers hold negative attitudes towards substance using patients, there are also some studies that have found positive attitudes towards this patient population. For instance, in their study of physician attitudes toward injecting drug users, Ding et al. found that seeing more injecting drug users was associated with more positive attitudes towards this patient population. Similarly, Kelleher & Cotter's descriptive study of ED doctors' and nurses' knowledge and attitudes concerning substance use found that the ED doctors and nurses who participated in the study had positive attitudes with regards to working with substance using patients. In the majority of these studies, however, positive attitudes were reported when health care providers were professionals working in addiction services, had more experience caring for this patient population, or had more personal contact with substance using patients. But does knowledge about substance use impact attitudes towards patients with substance-related presentations?Providing education or experience-based exercises may impact positively on attitudes towards substance using patients. Brief educational interventions, typically, informational sessions, either didactic or online, about alcohol and other drugs and how to assess and work with individuals using them, have been shown to have a positive impact on students' attitudes, knowledge and confidence relating to substance use and substance users. Whether ED staff attitudes towards patients with substance-related presentations are similarly impacted by the knowledge acquired through educational interventions remains unknown. A full systematic review of the literature will answer this question. A systematic review that examines the impact of knowledge on attitudes of ED staff will inform the design of educational strategies with emergency department staff to improve attitudes towards this patient population.To confirm that no other systematic review has been published on this topic, a preliminary literature search was conducted. The following databases were searched and no current or planned review was found related to this topic: JBI Database of Systematic Reviews and Implementation Reports, Cochrane Database of Systematic Reviews, PROSPERO, CINAHL, PubMed, and Scopus. Grey literature was also searched; however, no systematic review addressing the impact of knowledge on attitudes of ED staff towards patients with substance-related presentations was located.