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Sample records for coupled biogeochemical processes

  1. Characterization of Coupled Hydrologic-Biogeochemical Processes Using Geophysical Data

    SciTech Connect

    Hubbard, Susan

    2005-06-01

    Biogeochemical and hydrological processes are naturally coupled and variable over a wide range of spatial and temporal scales. Many remediation approaches also induce dynamic transformations in natural systems, such as the generation of gases, precipitates and biofilms. These dynamic transformations are often coupled and can reduce the hydraulic conductivity of the geologic materials, making it difficult to introduce amendments or to perform targeted remediation. Because it is difficult to predict these transformations, our ability to develop effective and sustainable remediation conditions at contaminated sites is often limited. Further complicating the problem is the inability to collect the necessary measurements at a high enough spatial resolution yet over a large enough volume for understanding field-scale transformations.

  2. Coupling of hydrodynamic and biogeochemical processes at aquatic interfaces

    NASA Astrophysics Data System (ADS)

    Lewandowski, Jörg; Krause, Stefan

    2015-04-01

    The overall aim of this contribution is a general conceptual framework for aquatic interfaces that is applicable to a wide range of systems, scales and processes. Aquatic interfaces are characterized by steep physical, chemical and biological gradients due to the contrast between the two adjacent environments. Investigating the spatially heterogeneous and temporally variable hydrodynamic and biogeochemical processes requires innovative monitoring technologies and sophisticated measurement techniques that can cope with different spatial scales. Although enhanced biogeochemical processing rates are inherent to aquatic interfaces due to their steep biogeochemical gradients and their intensive structural and compositional heterogeneity, the effective turnover depends strongly on the residence time distribution along the flow paths with their particular biogeochemical milieus and reaction kinetics. Thus, identification and characterization of the highly complex flow patterns in and across aquatic interfaces are crucial to understand biogeochemical processing along exchange flow paths and to quantify transport across aquatic interfaces; i.e. hydrodynamic and biogeochemical processes are closely interlinked. But interface processing rates are not only enhanced compared to the adjacent compartments that they connect; also completely different reactions might occur if certain thresholds are exceeded or the biogeochemical milieu differs significantly from the adjacent environments. Single events, temporal variability and spatial heterogeneity might increase overall processing rates of aquatic interfaces and thus, should not be neglected when studying aquatic interfaces. Aquatic interfaces are key zones relevant for the ecological state of the entire ecosystem and thus, understanding interface functioning and controls is paramount for ecosystem management.

  3. Coupled Biogeochemical Process Evaluation for Conceptualizing Trichloroethylene Co-Metabolism

    SciTech Connect

    Colwell, Frederick; Radtke, Corey; Newby, Deborah; Delwiche, Mark; Crawf, Ronald L.; Paszczynski, Andrzej; Strap, Janice; Conrad, Mark; Brodic, Eoin; Starr, Robert; Lee, Hope

    2006-04-05

    Chlorinated solvent wastes (e.g., trichloroethene or TCE) often occur as diffuse subsurface plumes in complex geological environments where coupled processes must be understood in order to implement remediation strategies. Monitored natural attenuation (MNA) warrants study as a remediation technology because it minimizes worker and environment exposure to the wastes and because it costs less than other technologies. However, to be accepted MNA requires 'lines of evidence' indicating that the wastes are effectively destroyed. Our research will study the coupled biogeochemical processes that dictate the rate of TCE co-metabolism in contaminated aquifers first at the Idaho National Laboratory and then at Paducah or the Savannah River Site, where natural attenuation of TCE is occurring. We will use flow-through in situ reactors to investigate the rate of methanotrophic co-metabolism of TCE and the coupling of the responsible biological processes with the dissolved methane flux and groundwater flow velocity. We will use new approaches (e.g., stable isotope probing, enzyme activity probes, real-time reverse transcriptase polymerase chain reaction, proteomics) to assay the TCE co-metabolic rates, and interpret these rates in the context of enzyme activity, gene expression, and cellular inactivation related to intermediates of TCE co-metabolism. By determining the rate of TCE co-metabolism at different methane concentrations and groundwater flow velocities, we will derive key modeling parameters for the computational simulations that describe the attenuation, and thereby refine such models while assessing the contribution of microbial relative to other natural attenuation processes. This research will strengthen our ability to forecast the viability of MNA at DOE and other sites that are contaminated with chlorinated hydrocarbons.

  4. Advances in Coupling of Kinetics and Molecular Scale Tools to Shed Light on Soil Biogeochemical Processes

    SciTech Connect

    Sparks, Donald

    2014-09-02

    Biogeochemical processes in soils such as sorption, precipitation, and redox play critical roles in the cycling and fate of nutrients, metal(loid)s and organic chemicals in soil and water environments. Advanced analytical tools enable soil scientists to track these processes in real-time and at the molecular scale. Our review focuses on recent research that has employed state-of-the-art molecular scale spectroscopy, coupled with kinetics, to elucidate the mechanisms of nutrient and metal(loid) reactivity and speciation in soils. We found that by coupling kinetics with advanced molecular and nano-scale tools major advances have been made in elucidating important soil chemical processes including sorption, precipitation, dissolution, and redox of metal(loids) and nutrients. Such advances will aid in better predicting the fate and mobility of nutrients and contaminants in soils and water and enhance environmental and agricultural sustainability.

  5. Multi-scale Characterization and Prediction of Coupled Subsurface Biogeochemical-Hydrological Processes

    SciTech Connect

    Hubbard, Susan; Williams, Ken; Steefel, Carl; Banfield, Jill; Long, Phil; Slater, Lee; Pride, Steve; Jinsong Chen

    2006-06-01

    To advance solutions needed for remediation of DOE contaminated sites, approaches are needed that can elucidate and predict reactions associated with coupled biological, geochemical, and hydrological processes over a variety of spatial scales and in heterogeneous environments. Our previous laboratory experimental experiments, which were conducted under controlled and homogeneous conditions, suggest that geophysical methods have the potential for elucidating system transformations that often occur during remediation. Examples include tracking the onset and aggregation of precipitates associated with sulfate reduction using seismic and complex resistivity methods (Williams et al., 2005; Ntarlagiannis et al., 2005) as well as estimating the volume of evolved gas associated with denitrification using radar velocity. These exciting studies illustrated that geophysical responses correlated with biogeochemical changes, but also that multiple factors could impact the geophysical signature and thus a better understanding as well as integration tools were needed to advance the techniques to the point where they can be used to provide quantitative estimates of system transformations.

  6. Spatial modeling of coupled hydrologic-biogeochemical processes for the Southern Sierra Critical Zone Observatory

    NASA Astrophysics Data System (ADS)

    Tague, C.

    2007-12-01

    One of the primary roles of modeling in critical zone research studies is to provide a framework for integrating field measurements and theory and for generalizing results across space and time. In the Southern Sierra Critical Zone Observatory (SCZO), significant spatial heterogeneity associated with mountainous terrain combined with high inter-annual and seasonal variation in climate, necessitates the use of spatial-temporal models for generating landscape scale understanding and predictions. Science questions related to coupled hydrologic and biogeochemical fluxes within the critical zone require a framework that can account for multiple and interacting processes. One of the core tools for the SCZO will be RHESSYs (Regional hydro-ecologic simulation system). RHESSys is an existing GIS-based model of hydrology and biogeochemical cycling. For the SCZO, we use RHESSys as an open-source, objected oriented model that can be extended to incorporate findings from field-based monitoring and analysis. We use the model as a framework for data assimilation, spatial-temporal interpolation, prediction, and scenario and hypothesis generation. Here we demonstrate the use of RHESSys as a hypothesis generation tool. We show how initial RHESSys predictions can be used to estimate when and where connectivity within the critical zone will lead to significant spatial or temporal gradients in vegetation carbon and moisture fluxes. We use the model to explore the potential implications of heterogeneity in critical zone controls on hydrologic processes at two scales: micro and macro. At the micro scale, we examine the role of preferential flowpaths. At the macro scale we consider the importance of upland-riparian zone connectivity. We show how the model can be used to design efficient field experiments by, a-priori providing quantitative estimate of uncertainty and highlighting when and where measurements might most effectively reduce that uncertainty.

  7. Three-dimensional approach using two coupled models for description of hydrological and biogeochemical processes at the catchment scale

    NASA Astrophysics Data System (ADS)

    Plesca, Ina; Kraft, Philipp; Haas, Edwin; Klatt, Steffen; Butterbach-Bahl, Klaus; Frede, Hans-Georg; Breuer, Lutz

    2014-05-01

    Hydrological and biogeochemical transport through changing landscapes has been well described during the past years in literature. However, the uncertainties of combined water quality and water quantity models are still challenging, both due to a lack in process understanding as well to spatiotemporal heterogeneity of environmental conditions driving the processes. In order to reduce the uncertainty in water quality and runoff predictions at the catchment scale, a variety of different model approaches from empirical-conceptual to fully physical and process based models have been developed. In this study we present a new modelling approach for the investigation of hydrological processes and nutrient cycles, with a focus on nitrogen in a small catchment from Hessen, Germany. A hydrological model based on the model toolbox Catchment Modelling Framework (CMF) has been coupled with the process based biogeochemical model LandscapeDNDC. States, fluxes and parameters are exchanged between the models at high temporal and spatial resolution using the Python scripting language in order to obtain a 3-dimensional model application. The transport of water and nutrients through the catchment is modelled using a 3D Richards/Darcy approach for subsurface fluxes, a kinematic wave approach for surface runoff and a Penman-Monteith based calculation of evapotranspiration. Biogeochemical processes are modelled by Landscape-DNDC, including plant growth and biomass allocation, organic matter mineralisation, nitrification, denitrification and associated nitrous oxide emissions. The interactions and module connectivity between the two coupled models, as well as the model application on a 3.7 km² catchment with the runoff results and nitrogen quantification will be presented in this study.

  8. Biogeochemical Processes in Microbial Ecosystems

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; DeVincenzi, Donald L. (Technical Monitor)

    2001-01-01

    The hierarchical organization of microbial ecosystems determines process rates that shape Earth's environment, create the biomarker sedimentary and atmospheric signatures of life and define the stage upon which major evolutionary events occurred. In order to understand how microorganisms have shaped the global environment of Earth and potentially, other worlds, we must develop an experimental paradigm that links biogeochemical processes with ever-changing temporal and spatial distributions of microbial population, and their metabolic properties. Photosynthetic microbial mats offer an opportunity to define holistic functionality at the millimeter scale. At the same time, their Biogeochemistry contributes to environmental processes on a planetary scale. These mats are possibly direct descendents of the most ancient biological communities; communities in which oxygenic photosynthesis might have been invented. Mats provide one of the best natural systems to study how microbial populations associate to control dynamic biogeochemical gradients. These are self-sustaining, complete ecosystems in which light energy absorbed over a diel (24 hour) cycle drives the synthesis of spatially-organized, diverse biomass. Tightly-coupled microorganisms in the mat have specialized metabolisms that catalyze transformations of carbon, nitrogen. sulfur, and a host of other elements.

  9. Autonomous Studies of Coupled Physical-Biogeochemical Processes- Lessons from NAB08 and Prospects for the Future

    NASA Astrophysics Data System (ADS)

    Lee, Craig; D'Asaro, Eric; Perry, Mary Jane

    2013-04-01

    Motivated by the increasing application of autonomous sensors to physical, biological and biogeochemical investigations at the submesoscale, we examine techniques developed during the 2008 North Atlantic Bloom Experiment (NAB08), review successes, failures, and lessons learned, and offer perspectives on how these approaches might evolve in response to near-term shifts in scientific goals and technological advances. NAB08 exploited the persistence of autonomous platforms coupled with the extensive capabilities of a ship-based sampling program to investigate the patch-scale physics, biogeochemistry and community dynamics of a spring phytoplankton bloom. Autonomous platforms (Seagliders following a heavily-instrumented Lagrangian float) collected measurements in a quasi-Lagrangian frame, beginning before bloom initiation and extending well past its demise. This system of autonomous instruments resolved variability at the patch scale while also providing the persistence needed to follow bloom evolution. Biological and biogeochemical measurements were conducted from R/V Knorr during the bloom. An aggressive protocol for sensor calibration and proxy building bridged the ship-based and autonomous efforts, leveraging the intensive but sparse ship-based measurements onto the much more numerous autonomous observations. The combination of sampling in the patch-following frame, persistent, autonomous surveys and focused, aggressive calibration and proxy building produced robust, quantitative estimates of physical and biogeochemical processes. For example, budgets of nitrate, dissolved oxygen and particulate organic carbon (POC) following the patch were used to estimate net community production (NCP) and apparent POC export. Net community production was 805 mmol C?m-2 during the main bloom, with apparent POC export of 564 mmol C?m-2 and 282 mmol C?m-2 lost due to net respiration (70%) and apparent export (30%) on the day following bloom termination. Thus, POC export of roughly

  10. Final Progress Report: Coupled Biogeochemical Process Evaluation for Conceptualizing Trichloroethylene Cometabolism

    SciTech Connect

    Crawford, Ronald L; Paszczynski, Andrzej J

    2010-02-19

    Our goal within the overall project is to demonstrate the presence and abundance of methane monooxygenases (MMOs) enzymes and their genes within the microbial community of the Idaho National Laboratory (INL) Test Area North (TAN) site. MMOs are thought to be the primary catalysts of natural attenuation of trichloroethylene (TCE) in contaminated groundwater at this location. The actual presence of the proteins making up MMO complexes would provide direct evidence for its participation in TCE degradation. The quantitative estimation of MMO genes and their translation products (sMMO and pMMO proteins) and the knowledge about kinetics and substrate specificity of MMOs will be used to develop mathematical models of the natural attenuation process in the TAN aquifer. The model will be particularly useful in prediction of TCE degradation rate in TAN and possibly in the other DOE sites. Bacteria known as methanotrophs produce a set of proteins that assemble to form methane monooxygenase complexes (MMOs), enzymes that oxidize methane as their natural substrate, thereby providing a carbon and energy source for the organisms. MMOs are also capable of co-metabolically transforming chlorinated solvents like TCE into nontoxic end products such as carbon dioxide and chloride. There are two known forms of methane monooxygenase, a membrane-bound particulate form (pMMO) and a cytoplasmic soluble form (sMMO). pMMO consists of two components, pMMOH (a hydroxylase comprised of 47-, 27-, and 24-kDa subunits) and pMMOR (a reductase comprised of 63 and 8-kDa subunits). sMMO consists of three components: a hydroxylase (protein A-250 kDa), a dimer of three subunits (α2β2γ2), a regulatory protein (protein B-15.8 kDa), and a reductase (protein C-38.6 kDa). All methanotrophs will produce a methanol dehydrogenase to channel the product of methane oxidation (methanol) into the central metabolite formaldehyde. University of Idaho (UI) efforts focused on proteomic analyses using mass

  11. Aggregate-scale spatial heterogeneity in reductive transformation of ferrihydrite resulting from coupled biogeochemical and physical processes

    NASA Astrophysics Data System (ADS)

    Pallud, C.; Masue-Slowey, Y.; Fendorf, S.

    2010-05-01

    Iron (hydr)oxides are ubiquitous in soils and sediments and play a dominant role in the geochemistry of surface and subsurface environments. Their fate depends on local environmental conditions, which in structured soils may vary significantly over short distances due to mass-transfer limitations on solute delivery and metabolite removal. In the present study, artificial soil aggregates were used to investigate the coupling of physical and biogeochemical processes affecting the spatial distribution of iron (Fe) phases resulting from reductive transformation of ferrihydrite. Spherical aggregates made of ferrihydrite-coated sand were inoculated with the dissimilatory Fe-reducing bacterium Shewanella putrefaciens strain CN-32, and placed into a flow reactor, the reaction cell simulates a diffusion-dominated soil aggregate surrounded by an advective flow domain. The spatial and temporal evolution of secondary mineralization products resulting from dissimilatory Fe reduction of ferrihydrite were followed within the aggregates in response to a range of flow rates and lactate concentrations. Strong radial variations in the distribution of secondary phases were observed owing to diffusively controlled delivery of lactate and efflux of Fe(II) and bicarbonate. In the aggregate cortex, only limited formation of secondary Fe phases were observed over 30 d of reaction, despite high rates of ferrihydrite reduction. Under all flow conditions tested, ferrihydrite transformation was limited in the cortex (70-85 mol.% Fe remained as ferrihydrite) because metabolites such as Fe(II) and bicarbonate were efficiently removed in outflow solutes. In contrast, within the inner fractions of the aggregate, limited mass-transfer results in metabolite (Fe(II) and bicarbonate) build-up and the consummate transformation of ferrihydrite - only 15-40 mol.% Fe remained as ferrihydrite after 30 d of reaction. Goethite/lepidocrocite, and minor amounts of magnetite, formed in the aggregate mid

  12. Biogeochemical Processes in Microbial Ecosystems

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.

    2001-01-01

    The hierarchical organization of microbial ecosystems determines process rates that shape Earth's environment, create the biomarker sedimentary and atmospheric signatures of life, and define the stage upon which major evolutionary events occurred. In order to understand how microorganisms have shaped the global environment of Earth and, potentially, other worlds, we must develop an experimental paradigm that links biogeochemical processes with ever-changing temporal and spatial distributions of microbial populations and their metabolic properties. Additional information is contained in the original extended abstract.

  13. Dynamic modeling of nitrogen losses in river networks unravels the coupled effects of hydrological and biogeochemical processes

    USGS Publications Warehouse

    Alexander, R.B.; Böhlke, J.K.; Boyer, E.W.; David, M.B.; Harvey, J.W.; Mulholland, P.J.; Seitzinger, S.P.; Tobias, C.R.; Tonitto, C.; Wollheim, W.M.

    2009-01-01

    The importance of lotic systems as sinks for nitrogen inputs is well recognized. A fraction of nitrogen in streamflow is removed to the atmosphere via denitrification with the remainder exported in streamflow as nitrogen loads. At the watershed scale, there is a keen interest in understanding the factors that control the fate of nitrogen throughout the stream channel network, with particular attention to the processes that deliver large nitrogen loads to sensitive coastal ecosystems. We use a dynamic stream transport model to assess biogeochemical (nitrate loadings, concentration, temperature) and hydrological (discharge, depth, velocity) effects on reach-scale denitrification and nitrate removal in the river networks of two watersheds having widely differing levels of nitrate enrichment but nearly identical discharges. Stream denitrification is estimated by regression as a nonlinear function of nitrate concentration, streamflow, and temperature, using more than 300 published measurements from a variety of US streams. These relations are used in the stream transport model to characterize nitrate dynamics related to denitrification at a monthly time scale in the stream reaches of the two watersheds. Results indicate that the nitrate removal efficiency of streams, as measured by the percentage of the stream nitrate flux removed via denitrification per unit length of channel, is appreciably reduced during months with high discharge and nitrate flux and increases during months of low-discharge and flux. Biogeochemical factors, including land use, nitrate inputs, and stream concentrations, are a major control on reach-scale denitrification, evidenced by the disproportionately lower nitrate removal efficiency in streams of the highly nitrate-enriched watershed as compared with that in similarly sized streams in the less nitrate-enriched watershed. Sensitivity analyses reveal that these important biogeochemical factors and physical hydrological factors contribute nearly

  14. Potential for real-time understanding of coupled hydrologic and biogeochemical processes in stream ecosystems: Future integration of telemetered data with process models for glacial meltwater streams

    NASA Astrophysics Data System (ADS)

    McKnight, Diane M.; Cozzetto, Karen; Cullis, James D. S.; Gooseff, Michael N.; Jaros, Christopher; Koch, Joshua C.; Lyons, W. Berry; Neupauer, Roseanna; Wlostowski, Adam

    2015-08-01

    While continuous monitoring of streamflow and temperature has been common for some time, there is great potential to expand continuous monitoring to include water quality parameters such as nutrients, turbidity, oxygen, and dissolved organic material. In many systems, distinguishing between watershed and stream ecosystem controls can be challenging. The usefulness of such monitoring can be enhanced by the application of quantitative models to interpret observed patterns in real time. Examples are discussed primarily from the glacial meltwater streams of the McMurdo Dry Valleys, Antarctica. Although the Dry Valley landscape is barren of plants, many streams harbor thriving cyanobacterial mats. Whereas a daily cycle of streamflow is controlled by the surface energy balance on the glaciers and the temporal pattern of solar exposure, the daily signal for biogeochemical processes controlling water quality is generated along the stream. These features result in an excellent outdoor laboratory for investigating fundamental ecosystem process and the development and validation of process-based models. As part of the McMurdo Dry Valleys Long-Term Ecological Research project, we have conducted field experiments and developed coupled biogeochemical transport models for the role of hyporheic exchange in controlling weathering reactions, microbial nitrogen cycling, and stream temperature regulation. We have adapted modeling approaches from sediment transport to understand mobilization of stream biomass with increasing flows. These models help to elucidate the role of in-stream processes in systems where watershed processes also contribute to observed patterns, and may serve as a test case for applying real-time stream ecosystem models.

  15. Coupled hydrological and biogeochemical processes controlling variability of nitrogen species in streamflow during autumn in an upland forest

    NASA Astrophysics Data System (ADS)

    Sebestyen, Stephen D.; Shanley, James B.; Boyer, Elizabeth W.; Kendall, Carol; Doctor, Daniel H.

    2014-02-01

    Autumn is a season of dynamic change in forest streams of the northeastern United States due to effects of leaf fall on both hydrology and biogeochemistry. Few studies have explored how interactions of biogeochemical transformations, various nitrogen sources, and catchment flow paths affect stream nitrogen variation during autumn. To provide more information on this critical period, we studied (1) the timing, duration, and magnitude of changes to stream nitrate, dissolved organic nitrogen (DON), and ammonium concentrations; (2) changes in nitrate sources and cycling; and (3) source areas of the landscape that most influence stream nitrogen. We collected samples at higher temporal resolution for a longer duration than typical studies of stream nitrogen during autumn. This sampling scheme encompassed the patterns and extremes that occurred during base flow and stormflow events of autumn. Base flow nitrate concentrations decreased by an order of magnitude from 5.4 to 0.7 µmol L-1 during the week when most leaves fell from deciduous trees. Changes to rates of biogeochemical transformations during autumn base flow explained the low nitrate concentrations; in-stream transformations retained up to 72% of the nitrate that entered a stream reach. A decrease of in-stream nitrification coupled with heterotrophic nitrate cycling were primary factors in the seasonal nitrate decline. The period of low nitrate concentrations ended with a storm event in which stream nitrate concentrations increased by 25-fold. In the ensuing weeks, peak stormflow nitrate concentrations progressively decreased over closely spaced, yet similarly sized events. Most stormflow nitrate originated from nitrification in near-stream areas with occasional, large inputs of unprocessed atmospheric nitrate, which has rarely been reported for nonsnowmelt events. A maximum input of 33% unprocessed atmospheric nitrate to the stream occurred during one event. Large inputs of unprocessed atmospheric nitrate show

  16. Coupled hydrological and biogeochemical processes controlling variability of nitrogen species in streamflow during autumn in an upland forest

    USGS Publications Warehouse

    Sebestyen, Stephen D.; Shanley, James B.; Boyer, Elizabeth W.; Kendall, Carol; Doctor, Daniel H.

    2014-01-01

    Autumn is a season of dynamic change in forest streams of the northeastern United States due to effects of leaf fall on both hydrology and biogeochemistry. Few studies have explored how interactions of biogeochemical transformations, various nitrogen sources, and catchment flow paths affect stream nitrogen variation during autumn. To provide more information on this critical period, we studied (1) the timing, duration, and magnitude of changes to stream nitrate, dissolved organic nitrogen (DON), and ammonium concentrations; (2) changes in nitrate sources and cycling; and (3) source areas of the landscape that most influence stream nitrogen. We collected samples at higher temporal resolution for a longer duration than typical studies of stream nitrogen during autumn. This sampling scheme encompassed the patterns and extremes that occurred during base flow and stormflow events of autumn. Base flow nitrate concentrations decreased by an order of magnitude from 5.4 to 0.7 µmol L−1 during the week when most leaves fell from deciduous trees. Changes to rates of biogeochemical transformations during autumn base flow explained the low nitrate concentrations; in-stream transformations retained up to 72% of the nitrate that entered a stream reach. A decrease of in-stream nitrification coupled with heterotrophic nitrate cycling were primary factors in the seasonal nitrate decline. The period of low nitrate concentrations ended with a storm event in which stream nitrate concentrations increased by 25-fold. In the ensuing weeks, peak stormflow nitrate concentrations progressively decreased over closely spaced, yet similarly sized events. Most stormflow nitrate originated from nitrification in near-stream areas with occasional, large inputs of unprocessed atmospheric nitrate, which has rarely been reported for nonsnowmelt events. A maximum input of 33% unprocessed atmospheric nitrate to the stream occurred during one event. Large inputs of unprocessed atmospheric nitrate

  17. Quantifying the dynamic coupling of hydrologic and biogeochemical processes in stream ecosystems: examples from streams in the McMurdo Dry Valleys, Antarctica

    NASA Astrophysics Data System (ADS)

    McKnight, D. M.; Lyons, W. B.; Gooseff, M. N.; Koch, J. C.; Neupauer, R.; Cozzetto, K.; Bencala, K.; Cullis, J. D.

    2014-12-01

    While continuous monitoring of stream flow and stream temperature has been a widely used resource for some time, currently there is great potential to expand continuous monitoring to include important water quality parameters such as nutrients and dissolved organic material. In many systems distinguishing between watershed and stream ecosystem controls can be challenging, and the usefulness of such monitoring can be enhanced by application of quantitative models to interpret observed patterns. The glacial meltwater streams of the McMurdo Dry Valleys, Antarctica, are surrounded by large expanses of patterned ground devoid of plants. In contrast, many streams have thriving cyanobacterial mats that are freeze-dried through the winter and begin photosynthesis with the onset of flow. Thus, the daily signal in terms of biogeochemical processes controlling water quality is generated within the stream. As part of the McMurdo Dry Valleys Long Term Ecological Research project, we have conducted field experiments and developed coupled biogeochemical transport models for the role of hyporheic exchange in controlling weathering of major ions, microbial cycling of nitrogen species, and streams temperature regulation. We have also adapted modelling approaches from sediment transport to understand mobilization of stream biomass with increasing flows. These models are relevant to understanding the role of in-stream processes in diverse stream systems where watershed processes also contribute to observed patterns.

  18. A Conceptual Model of Coupled Biogeochemical and Hydrogeological Processes Affected by In Situ Cr(VI) Bioreduction in Groundwater at Hanford 100H Site

    NASA Astrophysics Data System (ADS)

    Faybishenko, B.; Long, P. E.; Hazen, T. C.; Hubbard, S. S.; Williams, K. H.; Peterson, J. E.; Chen, J.; Volkova, E. V.; Newcomer, D. R.; Resch, C. T.; Cantrell, K.; Conrad, M. S.; Brodie, E. L.; Joyner, D. C.; Borglin, S. E.; Chakraborty, R. C.

    2007-05-01

    The overall objective of this presentation is to demonstrate a conceptual multiscale, multidomain model of coupling of biogeochemical and hydrogeological processes during bioremediation of Cr(VI) contaminated groundwater at Hanford 100H site. A slow release polylactate, Hydrogen Release Compound (HRCTM), was injected in Hanford sediments to stimulate immobilization of Cr(VI). The HRC injection induced a 2-order-of- magnitude increase in biomass and the onset of reducing biogeochemical conditions [e.g., redox potential decreased from +240 to -130 mV and dissolved oxygen (DO) was completely removed]. A three-well system, comprised of an injection well and upgradient and downgradient monitoring wells, was used for conducting the in situ biostimulation, one regional flow (no-pumping) tracer test, and five pumping tests along with the Br-tracer injection. Field measurements were conducted using a Br ion-selective electrode and a multiparameter flow cell to collect hourly data on temperature, pH, redox potential, electrical conductivity, and DO. Groundwater sampling was conducted by pumping through specially designed borehole water samplers. Cross-borehole radar tomography and seismic measurements were carried out to assess the site background lithological heterogeneity and the migration pathways of HRC byproducts through groundwater after the HRC injection. Several alternative approaches, including conventional and fractional advective dispersion equations and geostatistical analysis, were used to characterize hydraulic and biogeochemical transport parameters. The results of a joint inversion of cross-borehole geophysical tomography and flow-rate measurements in boreholes indicate the presence of a bimodal distribution of hydraulic conductivity for Hanford sediments. The Br- concentration double-peak BTCs curves indicate that HRC injection caused an increase in the tracer travel time (mainly in the low-permeability zone) over the period of observations of about 2 years

  19. A Reactive Transport Simulator for Biogeochemical Processes in Subsurface System

    2003-04-01

    BIOGEOCHEM is a Fortran code that mumerically simulates the coupled processes of solute transport, microbial population dynamics, microbial metabolism, and geochemical reactions. The potential applications of the code include, but not limited to, (a) sensitivity and uncertainty analyses for assessing the impact of microbial activity on subsurface geochemical systems; (b) extraction of biogeochemical parameter values from field observations or laboratory measurements, (c) helping to design and optimize laboratory biogeochemical experiments, and (d) data integration. Methodmore » of Solution: A finite difference method and a Newton-Raphson technique are used to solve a set of coupled nonlinear partial differential equations and algebraic equations. Practical Application: Environmental analysis, bioremediation performance assessments of radioactive or non-radioactive wase disposal, and academic research.« less

  20. Indian Ocean Biogeochemical Processes and Ecological Variability

    NASA Astrophysics Data System (ADS)

    Ofori, Leslie

    2010-11-01

    The Sustained Indian Ocean Biogeochemistry and Ecosystem Research (SIBER) conference was held in 2006 in Goa, India. The goals of the workshop were to assess the known facts about basin-wide biogeochemical and ecological dynamics of the Indian Ocean, to answer major questions, and to draw a road map for future research. The AGU monograph Indian Ocean Biogeochemical Processes and Ecological Variability, edited by Jerry D. Wiggert, Raleigh R. Hood, S. Wajih A. Naqvi, Kenneth H. Brink, and Sharon L. Smith, synthesizes the talks that were presented at this conference. In this interview, Eos talks with Jerry Wiggert, assistant professor of marine science at University of Southern Mississippi, Hattiesburg.

  1. Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies.

    PubMed

    Stegen, James C; Konopka, Allan; McKinley, James P; Murray, Chris; Lin, Xueju; Miller, Micah D; Kennedy, David W; Miller, Erin A; Resch, Charles T; Fredrickson, Jim K

    2016-01-01

    Physical properties of sediments are commonly used to define subsurface lithofacies and these same physical properties influence subsurface microbial communities. This suggests an (unexploited) opportunity to use the spatial distribution of facies to predict spatial variation in biogeochemically relevant microbial attributes. Here, we characterize three biogeochemical facies-oxidized, reduced, and transition-within one lithofacies and elucidate relationships among facies features and microbial community biomass, richness, and composition. Consistent with previous observations of biogeochemical hotspots at environmental transition zones, we find elevated biomass within a biogeochemical facies that occurred at the transition between oxidized and reduced biogeochemical facies. Microbial richness-the number of microbial taxa-was lower within the reduced facies and was well-explained by a combination of pH and mineralogy. Null modeling revealed that microbial community composition was influenced by ecological selection imposed by redox state and mineralogy, possibly due to effects on nutrient availability or transport. As an illustrative case, we predict microbial biomass concentration across a three-dimensional spatial domain by coupling the spatial distribution of subsurface biogeochemical facies with biomass-facies relationships revealed here. We expect that merging such an approach with hydro-biogeochemical models will provide important constraints on simulated dynamics, thereby reducing uncertainty in model predictions. PMID:27469056

  2. Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies

    PubMed Central

    Stegen, James C.; Konopka, Allan; McKinley, James P.; Murray, Chris; Lin, Xueju; Miller, Micah D.; Kennedy, David W.; Miller, Erin A.; Resch, Charles T.; Fredrickson, Jim K.

    2016-01-01

    Physical properties of sediments are commonly used to define subsurface lithofacies and these same physical properties influence subsurface microbial communities. This suggests an (unexploited) opportunity to use the spatial distribution of facies to predict spatial variation in biogeochemically relevant microbial attributes. Here, we characterize three biogeochemical facies—oxidized, reduced, and transition—within one lithofacies and elucidate relationships among facies features and microbial community biomass, richness, and composition. Consistent with previous observations of biogeochemical hotspots at environmental transition zones, we find elevated biomass within a biogeochemical facies that occurred at the transition between oxidized and reduced biogeochemical facies. Microbial richness—the number of microbial taxa—was lower within the reduced facies and was well-explained by a combination of pH and mineralogy. Null modeling revealed that microbial community composition was influenced by ecological selection imposed by redox state and mineralogy, possibly due to effects on nutrient availability or transport. As an illustrative case, we predict microbial biomass concentration across a three-dimensional spatial domain by coupling the spatial distribution of subsurface biogeochemical facies with biomass-facies relationships revealed here. We expect that merging such an approach with hydro-biogeochemical models will provide important constraints on simulated dynamics, thereby reducing uncertainty in model predictions. PMID:27469056

  3. Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies

    NASA Astrophysics Data System (ADS)

    Stegen, James C.; Konopka, Allan; McKinley, James P.; Murray, Chris; Lin, Xueju; Miller, Micah D.; Kennedy, David W.; Miller, Erin A.; Resch, Charles T.; Fredrickson, Jim K.

    2016-07-01

    Physical properties of sediments are commonly used to define subsurface lithofacies and these same physical properties influence subsurface microbial communities. This suggests an (unexploited) opportunity to use the spatial distribution of facies to predict spatial variation in biogeochemically relevant microbial attributes. Here, we characterize three biogeochemical facies—oxidized, reduced, and transition—within one lithofacies and elucidate relationships among facies features and microbial community biomass, richness, and composition. Consistent with previous observations of biogeochemical hotspots at environmental transition zones, we find elevated biomass within a biogeochemical facies that occurred at the transition between oxidized and reduced biogeochemical facies. Microbial richness—the number of microbial taxa—was lower within the reduced facies and was well-explained by a combination of pH and mineralogy. Null modeling revealed that microbial community composition was influenced by ecological selection imposed by redox state and mineralogy, possibly due to effects on nutrient availability or transport. As an illustrative case, we predict microbial biomass concentration across a three-dimensional spatial domain by coupling the spatial distribution of subsurface biogeochemical facies with biomass-facies relationships revealed here. We expect that merging such an approach with hydro-biogeochemical models will provide important constraints on simulated dynamics, thereby reducing uncertainty in model predictions.

  4. Electric shortcuts of biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Nielsen, Lars Peter; Risgaard-Petersen, Nils; Fossing, Henrik; Christensen, Peter Bondo; Sayama, Mikio

    2010-05-01

    Recent observations in marine sediment have revealed conductive networks transmitting electrons from oxidation processes in the anoxic zone to oxygen reduction in the oxic zone. The involved electrochemical processes seem to be biologically catalyzed and may account for more than half of the oxygen uptake in laboratory incubations of initially homogenized and stabilized sediment. Using microsensors and process rate measurements we further investigated the effect of the electric currents on sediment biogeochemistry. Dissolved sulfide readily donated electrons to the networks and could be depleted below detection limit in a several cm thick layer below the oxic zone. Subsequent dissolution of iron sulphide was indicated by mobilization of ferrous iron being precipitated again as ferric iron at the oxic-anoxic interface. Lowered sulphate reduction rates in the upper centimeters of the sediment confirmed the depth range of the electric communication and indicated donation of electrons directly from organotrophic bacteria. The separation of oxidation and reduction processes created steep pH gradients eventually causing carbonate precipitation at the surface and probably also carbonate dissolution at depth. We suggest that the electric currents allowing reactions between compounds far from one another have significant effects in natural marine sediments as well as other environments with redox gradients.

  5. Simulation of land-atmosphere gaseous exchange using a coupled land surface-biogeochemical model

    NASA Astrophysics Data System (ADS)

    Gu, C.; Riley, W. J.; Perez, T. J.; Pan, L.

    2009-12-01

    It is important to develop and evaluate biogeochemical models that on the one hand represent vegetation and soil dynamics and on the other hand provide energy and water fluxes in a temporal resolution suitable for biogeochemical processes. In this study, we present a consistent coupling between a common land surface model (CLM3.0) and a recently developed biogeochemical model (TOUGHREACT-N). The model TOUGHREACT-N (TR-N) is one of the few process-based models that simulate green house gases fluxes by using an implicit scheme to solve the diffusion equations governing soil heat and water fluxes. By coupling with CLM3.0, we have significantly improved TR-N by including realistic representations of surface water, energy, and momentum exchanges, through the use of improved formulations for soil evaporation, plant transpiration, vegetation growth, and plant nitrogen uptake embedded in CLM3.0. The coupled CLMTR-N model is a first step for a full coupling of land surface and biogeochemical processes. The model is evaluated with measurements of soil temperature, soil water content, and N2O and N2 gaseous emission data from fallow, corn, and forest sites in Venezuela. The results demonstrate that the CLMTR-N model simulates realistic diurnal variation of soil temperature, soil water content, and N gaseous fluxes. For example, mean differences between predicted and observed midday near-surface soil water content were 8, 11, and 4 % in July, August, and September. The sensitivity of the biogeochemical processes and resulting N emissions to variation in environmental drivers is high, which indicates the need to calculate biogeochemical processes in, at least, two hourly time steps using dynamically updated (rather than daily averaged) soil environmental conditions. The development in CLMTR-N of such a complex representation of processes will allow us to characterize relevant processes and simplifications appropriate for regional to global-scale coupled biogeochemical and

  6. Simulating temporal variations of nitrogen losses in river networks with a dynamic transport model unravels the coupled effects of hydrological and biogeochemical processes

    SciTech Connect

    Mulholland, Patrick J; Alexander, Richard; Bohlke, John; Boyer, Elizabeth; Harvey, Judson; Seitzinger, Sybil; Tobias, Craig; Tonitto, Christina; Wollheim, Wilfred

    2009-01-01

    The importance of lotic systems as sinks for nitrogen inputs is well recognized. A fraction of nitrogen in streamflow is removed to the atmosphere via denitrification with the remainder exported in streamflow as nitrogen loads. At the watershed scale, there is a keen interest in understanding the factors that control the fate of nitrogen throughout the stream channel network, with particular attention to the processes that deliver large nitrogen loads to sensitive coastal ecosystems. We use a dynamic stream transport model to assess biogeochemical (nitrate loadings, concentration, temperature) and hydrological (discharge, depth, velocity) effects on reach-scale denitrification and nitrate removal in the river networks of two watersheds having widely differing levels of nitrate enrichment but nearly identical discharges. Stream denitrification is estimated by regression as a nonlinear function of nitrate concentration, streamflow, and temperature, using more than 300 published measurements from a variety of US streams. These relations are used in the stream transport model to characterize nitrate dynamics related to denitrification at a monthly time scale in the stream reaches of the two watersheds. Results indicate that the nitrate removal efficiency of streams, as measured by the percentage of the stream nitrate flux removed via denitrification per unit length of channel, is appreciably reduced during months with high discharge and nitrate flux and increases during months of low-discharge and flux. Biogeochemical factors, including land use, nitrate inputs, and stream concentrations, are a major control on reach-scale denitrification, evidenced by the disproportionately lower nitrate removal efficiency in streams of the highly nitrate-enriched watershed as compared with that in similarly sized streams in the less nitrate-enriched watershed. Sensitivity analyses reveal that these important biogeochemical factors and physical hydrological factors contribute nearly

  7. Diel biogeochemical processes in terrestrial waters

    USGS Publications Warehouse

    Compiled and Edited by Nimick, David A.; Gammons, Christopher H.

    2011-01-01

    Many biogeochemical processes in rivers and lakes respond to the solar photocycle and produce persistent patterns of measureable phenomena that exhibit a day-night, or 24-h, cycle. Despite a large body of recent literature, the mechanisms responsible for these diel fluctuations are widely debated, with a growing consensus that combinations of physical, chemical, and biological processes are involved. These processes include streamflow variation, photosynthesis and respiration, plant assimilation, and reactions involving photochemistry, adsorption and desorption, and mineral precipitation and dissolution. Diel changes in streamflow and water properties such as temperature, pH, and dissolved oxygen concentration have been widely recognized, and recently, diel studies have focused more widely by considering other constituents such as dissolved and particulate trace metals, metalloids, rare earth elements, mercury, organic matter, dissolved inorganic carbon (DIC), and nutrients. The details of many diel processes are being studied using stable isotopes, which also can exhibit diel cycles in response to microbial metabolism, photosynthesis and respiration, or changes in phase, speciation, or redox state. In addition, secondary effects that diel cycles might have, for example, on biota or in the hyporheic zone are beginning to be considered. This special issue is composed primarily of papers presented at the topical session "Diurnal Biogeochemical Processes in Rivers, Lakes, and Shallow Groundwater" held at the annual meeting of the Geological Society of America in October 2009 in Portland, Oregon. This session was organized because many of the growing number of diel studies have addressed just a small part of the full range of diel cycling phenomena found in rivers and lakes. This limited focus is understandable because (1) fundamental aspects of many diel processes are poorly understood and require detailed study, (2) the interests and expertise of individual

  8. Global Biology Research Program: Biogeochemical Processes in Wetlands

    NASA Technical Reports Server (NTRS)

    Bartlett, D. S. (Editor)

    1984-01-01

    The results of a workshop examining potential NASA contributions to research on wetland processes as they relate to global biogeochemical cycles are summarized. A wetlands data base utilizing remotely sensed inventories, studies of wetland/atmosphere exchange processes, and the extrapolation of local measurements to global biogeochemical cycling processes were identified as possible areas for NASA support.

  9. Coupling a terrestrial biogeochemical model to the common land model

    SciTech Connect

    Shi, Xiaoying; Mao, Jiafu; Wang, Yingping; Dai, Yongjiu; Tang, Xuli

    2011-01-01

    A terrestrial biogeochemical model (CASACNP) was coupled to a land surface model (the Common Land Model, CoLM) to simulate the dynamics of carbon substrate in soil and its limitation on soil respiration. The combined model, CoLM-CASACNP, was able to predict long-term carbon sources and sinks that CoLM alone could not. The coupled model was tested using measurements of belowground respiration and surface fluxes from two forest ecosystems. The combined model simulated reasonably well the diurnal and seasonal variations of net ecosystem carbon exchange, as well as seasonal variation in the soil respiration rate of both the forest sites chosen for this study. However, the agreement between model simulations and actual measurements was poorer under dry conditions. The model should be tested against more measurements before being applied globally to investigate the feedbacks between the carbon cycle and climate change.

  10. Climate change effects on watershed hydrological and biogeochemical processes

    EPA Science Inventory

    Projected changes in climate are widely expected to alter watershed processes. However, the extent of these changes is difficult to predict because complex interactions among affected hydrological and biogeochemical processes will likely play out over many decades and spatial sc...

  11. Temporal dynamics of biogeochemical processes at the Norman Landfill site

    NASA Astrophysics Data System (ADS)

    Arora, Bhavna; Mohanty, Binayak P.; McGuire, Jennifer T.; Cozzarelli, Isabelle M.

    2013-10-01

    The temporal variability observed in redox sensitive species in groundwater can be attributed to coupled hydrological, geochemical, and microbial processes. These controlling processes are typically nonstationary, and distributed across various time scales. Therefore, the purpose of this study is to investigate biogeochemical data sets from a municipal landfill site to identify the dominant modes of variation and determine the physical controls that become significant at different time scales. Data on hydraulic head, specific conductance, δ2H, chloride, sulfate, nitrate, and nonvolatile dissolved organic carbon were collected between 1998 and 2000 at three wells at the Norman Landfill site in Norman, OK. Wavelet analysis on this geochemical data set indicates that variations in concentrations of reactive and conservative solutes are strongly coupled to hydrologic variability (water table elevation and precipitation) at 8 month scales, and to individual eco-hydrogeologic framework (such as seasonality of vegetation, surface-groundwater dynamics) at 16 month scales. Apart from hydrologic variations, temporal variability in sulfate concentrations can be associated with different sources (FeS cycling, recharge events) and sinks (uptake by vegetation) depending on the well location and proximity to the leachate plume. Results suggest that nitrate concentrations show multiscale behavior across temporal scales for different well locations, and dominant variability in dissolved organic carbon for a closed municipal landfill can be larger than 2 years due to its decomposition and changing content. A conceptual framework that explains the variability in chemical concentrations at different time scales as a function of hydrologic processes, site-specific interactions, and/or coupled biogeochemical effects is also presented.

  12. Temporal dynamics of biogeochemical processes at the Norman Landfill site

    USGS Publications Warehouse

    Arora, Bhavna; Mohanty, Binayak P.; McGuire, Jennifer T.; Cozzarelli, Isabelle M.

    2013-01-01

    The temporal variability observed in redox sensitive species in groundwater can be attributed to coupled hydrological, geochemical, and microbial processes. These controlling processes are typically nonstationary, and distributed across various time scales. Therefore, the purpose of this study is to investigate biogeochemical data sets from a municipal landfill site to identify the dominant modes of variation and determine the physical controls that become significant at different time scales. Data on hydraulic head, specific conductance, δ2H, chloride, sulfate, nitrate, and nonvolatile dissolved organic carbon were collected between 1998 and 2000 at three wells at the Norman Landfill site in Norman, OK. Wavelet analysis on this geochemical data set indicates that variations in concentrations of reactive and conservative solutes are strongly coupled to hydrologic variability (water table elevation and precipitation) at 8 month scales, and to individual eco-hydrogeologic framework (such as seasonality of vegetation, surface-groundwater dynamics) at 16 month scales. Apart from hydrologic variations, temporal variability in sulfate concentrations can be associated with different sources (FeS cycling, recharge events) and sinks (uptake by vegetation) depending on the well location and proximity to the leachate plume. Results suggest that nitrate concentrations show multiscale behavior across temporal scales for different well locations, and dominant variability in dissolved organic carbon for a closed municipal landfill can be larger than 2 years due to its decomposition and changing content. A conceptual framework that explains the variability in chemical concentrations at different time scales as a function of hydrologic processes, site-specific interactions, and/or coupled biogeochemical effects is also presented.

  13. Benthic-Pelagic Coupling in Biogeochemical and Climate Models: Existing Approaches, Recent developments and Roadblocks

    NASA Astrophysics Data System (ADS)

    Arndt, Sandra

    2016-04-01

    Marine sediments are key components in the Earth System. They host the largest carbon reservoir on Earth, provide the only long term sink for atmospheric CO2, recycle nutrients and represent the most important climate archive. Biogeochemical processes in marine sediments are thus essential for our understanding of the global biogeochemical cycles and climate. They are first and foremost, donor controlled and, thus, driven by the rain of particulate material from the euphotic zone and influenced by the overlying bottom water. Geochemical species may undergo several recycling loops (e.g. authigenic mineral precipitation/dissolution) before they are either buried or diffuse back to the water column. The tightly coupled and complex pelagic and benthic process interplay thus delays recycling flux, significantly modifies the depositional signal and controls the long-term removal of carbon from the ocean-atmosphere system. Despite the importance of this mutual interaction, coupled regional/global biogeochemical models and (paleo)climate models, which are designed to assess and quantify the transformations and fluxes of carbon and nutrients and evaluate their response to past and future perturbations of the climate system either completely neglect marine sediments or incorporate a highly simplified representation of benthic processes. On the other end of the spectrum, coupled, multi-component state-of-the-art early diagenetic models have been successfully developed and applied over the past decades to reproduce observations and quantify sediment-water exchange fluxes, but cannot easily be coupled to pelagic models. The primary constraint here is the high computation cost of simulating all of the essential redox and equilibrium reactions within marine sediments that control carbon burial and benthic recycling fluxes: a barrier that is easily exacerbated if a variety of benthic environments are to be spatially resolved. This presentation provides an integrative overview of

  14. A Coupled Land Surface-Subsurface Biogeochemical Model for Aqueous and Gaseous Nitrogen Losses

    NASA Astrophysics Data System (ADS)

    Gu, C.; Maggi, F.; Riley, W.; Pan, L.; Xu, T.; Oldenburg, C.; Miller, N.

    2008-12-01

    In recent years concern has grown over the contribution of nitrogen (N) fertilizers to nitrate (NOB3PB-P) water pollution and atmospheric pollution of nitrous oxide (NB2BO), nitric oxide (NO), and ammonia (NHB3B). Characterizing the amount and species of N losses is therefore essential in developing a strategy to estimate and mitigate N leaching and emission to the atmosphere. Indeed, transformations of nitrogen depend strongly on water content, soil temperature, and nitrogen concentration. Land surface processes therefore have to be taken into account to properly characterize N biogeochemical cycling. However, most current nitrogen biogeochemical models take the land surface as the upper boundary by lumping the complex processes above the surface as known boundary conditions. In this study, an extant subsurface mechanistic N cycle model (TOUGHREACT-N) was coupled with the community land model (CLM). The resulting coupled model extends the modeling capability of TOUGHREACT-N to include the important energy, momentum, and moisture dynamics provided by CLM. The coupled model showed a significant impact of land-surface diurnal forcing on soil temperature and moisture and on nitrogen fluxes. We also discuss field applications of the model and discuss how temporal dynamics of nitrogen fluxes are affected by land surface processes.

  15. A General Simulator for Reaction-Based Biogeochemical Processes

    SciTech Connect

    Fang, Yilin; Yabusaki, Steven B.; Yeh, George

    2006-02-01

    As more complex biogeochemical situations are being investigated (e.g., evolving reactivity, passivation of reactive surfaces, dissolution of sorbates), there is a growing need for biogeochemical simulators to flexibly and facilely address new reaction forms and rate laws. This paper presents an approach that accommodates this need to efficiently simulate general biogeochemical processes, while insulating the user from additional code development. The approach allows for the automatic extraction of fundamental reaction stoichiometry and thermodynamics from a standard chemistry database, and the symbolic entry of arbitrarily complex user-specified reaction forms, rate laws, and equilibria. The user-specified equilibrium and kinetic reactions (i.e., reactions not defined in the format of the standardized database) are interpreted by the Maple symbolic mathematical software package. FORTRAN 90 code is then generated by Maple for (1) the analytical Jacobian matrix (if preferred over the numerical Jacobian matrix) used in the Newton-Raphson solution procedure, and (2) the residual functions for user-specified equilibrium expressions and rate laws. Matrix diagonalization eliminates the need to conceptualize the system of reactions as a tableau, while identifying a minimum rank set of basis species with enhanced numerical convergence properties. The newly generated code, which is designed to operate in the BIOGEOCHEM biogeochemical simulator, is then compiled and linked into the BIOGEOCHEM executable. With these features, users can avoid recoding the simulator to accept new equilibrium expressions or kinetic rate laws, while still taking full advantage of the stoichiometry and thermodynamics provided by an existing chemical database. Thus, the approach introduces efficiencies in the specification of biogeochemical reaction networks and eliminates opportunities for mistakes in preparing input files and coding errors. Test problems are used to demonstrate the features of

  16. The interaction between biogeophysical and biogeochemical processes and their feedback on permafrost soil carbon stocks

    NASA Astrophysics Data System (ADS)

    ElMasri, B.; Barman, R.; Jain, A. K.

    2013-12-01

    Our current understanding of the full suite of processes and their responses to recent warming in terrestrial high-latitudes are far from complete. While continued research on development of more detailed Earth system models (ESMs) is essential to understand the interactions and feedbacks between vegetation, soils and climate change in the Northern high latitudes (NHL), one of the major challenges is the treatment of the biophysical and biogeochemical processes and feedback in the ESM and their impact on soil organic carbon. We used a land surface model, the Integrated Science Assessment Model (ISAM), which coupled carbon-nitrogen biogeochemical and energy and hydrology biogeophysical processes, to investigate the effects of feedbacks between the biogeochemical and biogeophysical processes on the model estimated soil organic carbon (SOC) for the NHL permafrost region. We not only focused on recent improvement in the ISAM biogeophysical processes that are deemed important for the high latitude soils/snow; such as deep soil column, modulation of soil thermal and hydrological properties, wind compaction of snow, and depth hoar formation; on permafrost SOC, but also biogeochemical processes; such as dynamic phenology and root distribution, litter carbon decomposition rates and nitrogen amount remaining; on soil biogeochemistry. We selected multiple sites representative of different high latitude biomes to calibrate and evaluate the model. We then carried out several ISAM model simulations to study the effects of feedbacks between biogeochemical and biogeophysical processes on SOC. Our model analysis shows that including the biogeophysical processes alone could increase modeled Northern high-latitude permafrost carbon by about 30% compared to measurements. Accounting for the biogeochmical processes further improve the NHL soil carbon. This study demonstrates that improvements in biogeophysical or biogeochemical processes alone does not help to improve the modeled SOC

  17. Final Project Report - Coupled Biogeochemical Process Evaluation for Conceptualizing Trichloriethylene Co-Metabolism: Co-Metabolic Enzyme Activity Probes and Modeling Co-Metabolism and Attenuation

    SciTech Connect

    Starr, Robert C; Orr, Brennon R; Lee, M Hope; Delwiche, Mark

    2010-02-26

    Trichloroethene (TCE) (also known as trichloroethylene) is a common contaminant in groundwater. TCE is regulated in drinking water at a concentration of 5 µg/L, and a small mass of TCE has the potential to contaminant large volumes of water. The physical and chemical characteristics of TCE allow it to migrate quickly in most subsurface environments, and thus large plumes of contaminated groundwater can form from a single release. The migration and persistence of TCE in groundwater can be limited by biodegradation. TCE can be biodegraded via different processes under either anaerobic or aerobic conditions. Anaerobic biodegradation is widely recognized, but aerobic degradation is less well recognized. Under aerobic conditions, TCE can be oxidized to non hazardous conditions via cometabolic pathways. This study applied enzyme activity probes to demonstrate that cometabolic degradation of TCE occurs in aerobic groundwater at several locations, used laboratory microcosm studies to determine aerobic degradation rates, and extrapolated lab-measured rates to in situ rates based on concentrations of microorganisms with active enzymes involved in cometabolic TCE degradation. Microcosms were constructed using basalt chips that were inoculated with microorganisms to groundwater at the Idaho National Laboratory Test Area North TCE plume by filling a set of Flow-Through In Situ Reactors (FTISRs) with chips and placing the FTISRs into the open interval of a well for several months. A parametric study was performed to evaluate predicted degradation rates and concentration trends using a competitive inhibition kinetic model, which accounts for competition for enzyme active sites by both a growth substrate and a cometabolic substrate. The competitive inhibition kinetic expression was programmed for use in the RT3D reactive transport package. Simulations of TCE plume evolution using both competitive inhibition kinetics and first order decay were performed.

  18. Dynamic interactions of ecohydrological and biogeochemical processes in water-stressed environments

    NASA Astrophysics Data System (ADS)

    Wang, L.; Manzoni, S.; Ravi, S.; Riveros-Iregui, D. A.; Caylor, K. K.

    2015-12-01

    Water is the essential reactant, catalyst, or medium for many biogeochemical reactions and flows. The coupling between hydrological and biogeochemical processes is particularly evident in drylands, but also in areas with strong seasonal precipitation patterns or in mesic systems during droughts. Moreover, this coupling is apparent at all levels in the ecosystems - from soil microbial cells to whole plants to landscapes. A holistic approach is essential to fully understand function and processes in water-limited ecosystems and to predict their responses to environmental change. We examine some of the mechanisms responsible for microbial and vegetation responses to moisture inputs in water-limited ecosystems through a synthesis of existing literature and we also summarize the modeling advances in addressing these interactions. This paper focuses on three opportunities to advance coupled hydrological and biogeochemical research: (1) improved quantitative understanding of mechanisms linking hydrological and biogeochemical variations in drylands, (2) experimental and theoretical approaches that describe linkages between hydrology and biogeochemistry (particularly across scales), and (3) the use of these tools and insights to address critical dryland issues of societal relevance.

  19. Polychlorinated Biphenyls as Probes of Biogeochemical Processes in Rivers

    USGS Publications Warehouse

    Fitzgerald, S.A.; Steuer, J.J.

    1997-01-01

    A field study was conducted to investigate the use of PCB (polychlorinated biphenyl) congener and homolog assemblages as tracers of biogeochemical processes in the Milwaukee and Manitowoc Rivers in southeastern Wisconsin from 1993 to 1995. PCB congeners in the dissolved and suspended particle phases, along with various algal indicators (algal carbon and pigments), were quantitated in the water seasonally. In addition, PCB congener assemblages were determined seasonally in surficial bed sediments. Biogeochemical processes investigated included: determination of the source of suspended particles and bottom sediments by comparison with known Aroclor mixtures, water-solid partitioning, and algal uptake of PCBs. Seasonal differences among the PCB assemblages were observed mainly in the dissolved phase, somewhat less in the suspended particulate phase, and not at all in the bed sediments.

  20. Development of Advanced Eco-hydrologic and Biogeochemical Coupling Model to Re-evaluate Greenhouse Gas Budget of Biosphere

    NASA Astrophysics Data System (ADS)

    Nakayama, T.; Maksyutov, S. S.

    2015-12-01

    Inland waters including rivers, lakes, and groundwater are suggested to act as a transport pathway for water and dissolved substances, and play some role in continental biogeochemical cycling (Cole et al., 2007; Battin et al., 2009). The authors have developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (2014, 2015, etc.), which includes feedback between hydrologic-geomorphic-ecological processes. In this study, NICE was further developed to couple with various biogeochemical cycle models in biosphere, those for water quality in aquatic ecosystems, and those for carbon weathering. The NICE-biogeochemical coupling model incorporates connectivity of the biogeochemical cycle accompanied by hydrologic cycle between surface water and groundwater, hillslopes and river networks, and other intermediate regions. The model also includes reaction between inorganic and organic carbons, and its relation to nitrogen and phosphorus in terrestrial-aquatic continuum. The coupled model showed to improve the accuracy of inundation stress mechanism such as photosynthesis and primary production, which attributes to improvement of CH4 flux in wetland sensitive to fluctuations of shallow groundwater. The model also simulated CO2 evasion from inland water in global scale, and was relatively in good agreement in empirical relation (Aufdenkampe et al., 2011) which has relatively an uncertainty in the calculated flux because of pCO2 data missing in some region and effect of small tributaries, etc. Further, the model evaluated how the expected CO2 evasion might change as inland waters become polluted with nutrients and eutrophication increases from agriculture and urban areas (Pacheco et al., 2013). This advanced eco-hydrologic and biogeochemical coupling model would play important role to re-evaluate greenhouse gas budget of the biosphere, and to bridge gap between top-down and bottom-up approaches (Battin et al., 2009; Regnier et al., 2013).

  1. PEATBOG: a biogeochemical model for analyzing coupled carbon and nitrogen dynamics in northern peatlands

    NASA Astrophysics Data System (ADS)

    Wu, Y.; Blodau, C.

    2013-03-01

    Elevated nitrogen deposition and climate change alter the vegetation communities and carbon (C) and nitrogen (N) cycling in peatlands. To address this issue we developed a new process-oriented biogeochemical model (PEATBOG) for analyzing coupled carbon and nitrogen dynamics in northern peatlands. The model consists of four submodels, which simulate: (1) daily water table depth and depth profiles of soil moisture, temperature and oxygen levels; (2) competition among three plants functional types (PFTs), production and litter production of plants; (3) decomposition of peat; and (4) production, consumption, diffusion and export of dissolved C and N species in soil water. The model is novel in the integration of the C and N cycles, the explicit spatial resolution belowground, the consistent conceptualization of movement of water and solutes, the incorporation of stoichiometric controls on elemental fluxes and a consistent conceptualization of C and N reactivity in vegetation and soil organic matter. The model was evaluated for the Mer Bleue Bog, near Ottawa, Ontario, with regards to simulation of soil moisture and temperature and the most important processes in the C and N cycles. Model sensitivity was tested for nitrogen input, precipitation, and temperature, and the choices of the most uncertain parameters were justified. A simulation of nitrogen deposition over 40 yr demonstrates the advantages of the PEATBOG model in tracking biogeochemical effects and vegetation change in the ecosystem.

  2. PEATBOG: a biogeochemical model for analyzing coupled carbon and nitrogen dynamics in northern peatlands

    NASA Astrophysics Data System (ADS)

    Wu, Y.; Blodau, C.

    2013-08-01

    Elevated nitrogen deposition and climate change alter the vegetation communities and carbon (C) and nitrogen (N) cycling in peatlands. To address this issue we developed a new process-oriented biogeochemical model (PEATBOG) for analyzing coupled carbon and nitrogen dynamics in northern peatlands. The model consists of four submodels, which simulate: (1) daily water table depth and depth profiles of soil moisture, temperature and oxygen levels; (2) competition among three plants functional types (PFTs), production and litter production of plants; (3) decomposition of peat; and (4) production, consumption, diffusion and export of dissolved C and N species in soil water. The model is novel in the integration of the C and N cycles, the explicit spatial resolution belowground, the consistent conceptualization of movement of water and solutes, the incorporation of stoichiometric controls on elemental fluxes and a consistent conceptualization of C and N reactivity in vegetation and soil organic matter. The model was evaluated for the Mer Bleue Bog, near Ottawa, Ontario, with regards to simulation of soil moisture and temperature and the most important processes in the C and N cycles. Model sensitivity was tested for nitrogen input, precipitation, and temperature, and the choices of the most uncertain parameters were justified. A simulation of nitrogen deposition over 40 yr demonstrates the advantages of the PEATBOG model in tracking biogeochemical effects and vegetation change in the ecosystem.

  3. Implementing high-latitude biogeochemical processes into Earth System Models

    NASA Astrophysics Data System (ADS)

    Brovkin, Victor; Kleinen, Thomas; Cresto-Aleina, Fabio; Kloster, Silvia; Ilyina, Tatiana

    2016-04-01

    Projections of future climate changes suggest that air temperatures in the Arctic could rise to the levels unprecedented in the last million years. Sensitivity of carbon storages on land and shelves to climate change of that scale is highly uncertain. Earth System models (ESMs), consisting of atmosphere, ocean, land, and cryosphere components are the main tools to understand interactions between carbon cycle and climate. However, ESM representation of ecological and biogeochemical processes in the Arctic is extremely simplistic. For example, all ESMs agree that tree cover in the future warming scenarios will move northwards to the Arctic coast, but they ignore interactions between vegetation, permafrost, and disturbances such as fires, which are critical for vegetation dynamics in this region. Improving modeling of interactions between model components and their evaluation against growing observational evidence is a promising research area. The first attempts to account for the permafrost carbon dynamics in the ESM framework suggest that CO2 and CH4 emissions from high-latitude regions in the 21st century are relatively small, but they become much more significant afterwards due to committed climate changes. Therefore, extension of ESM simulations beyond 2100 is essential to estimate a proper scale of frozen carbon pool response to human-induced climate change. Additionally, inclusion of sub-sea permafrost component into ESMs is an active research area that brings together terrestrial and marine biogeochemical communities, as well as geologists analyzing climate proxies on glacial timescales. Another challenging aspect of biogeochemical interactions in Arctic is an extreme land surface heterogeneity. A mixture of wetlands, lakes, and vegetation-covered surfaces on fine local scale is not properly reflected in the model structure. A promising approach of dealing with scaling gaps in modeling high-latitude biogeochemical processes in ESMs will be presented.

  4. A 3-D variational assimilation scheme in coupled transport-biogeochemical models: Forecast of Mediterranean biogeochemical properties

    PubMed Central

    Teruzzi, Anna; Dobricic, Srdjan; Solidoro, Cosimo; Cossarini, Gianpiero

    2014-01-01

    [1] Increasing attention is dedicated to the implementation of suitable marine forecast systems for the estimate of the state of the ocean. Within the framework of the European MyOcean infrastructure, the pre-existing short-term Mediterranean Sea biogeochemistry operational forecast system has been upgraded by assimilating remotely sensed ocean color data in the coupled transport-biogeochemical model OPATM-BFM using a 3-D variational data assimilation (3D-VAR) procedure. In the present work, the 3D-VAR scheme is used to correct the four phytoplankton functional groups included in the OPATM-BFM in the period July 2007 to September 2008. The 3D-VAR scheme decomposes the error covariance matrix using a sequence of different operators that account separately for vertical covariance, horizontal covariance, and covariance among biogeochemical variables. The assimilation solution is found in a reduced dimensional space, and the innovation for the biogeochemical variables is obtained by the sequential application of the covariance operators. Results show a general improvement in the forecast skill, providing a correction of the basin-scale bias of surface chlorophyll concentration and of the local-scale spatial and temporal dynamics of typical bloom events. Further, analysis of the assimilation skill provides insights into the functioning of the model. The computational costs of the assimilation scheme adopted are low compared to other assimilation techniques, and its modular structure facilitates further developments. The 3D-VAR scheme results especially suitable for implementation within a biogeochemistry operational forecast system. PMID:26213670

  5. A coupled biogeochemical-Dynamic Energy Budget model as a tool for managing fish production ponds.

    PubMed

    Serpa, Dalila; Pousão-Ferreira, Pedro; Caetano, Miguel; Cancela da Fonseca, Luís; Dinis, Maria Teresa; Duarte, Pedro

    2013-10-01

    The sustainability of semi-intensive aquaculture relies on management practices that simultaneously improve production efficiency and minimize the environmental impacts of this activity. The purpose of the present work was to develop a mathematical model that reproduced the dynamics of a semi-intensive fish earth pond, to simulate different management scenarios for optimizing fish production. The modeling approach consisted of coupling a biogeochemical model that simulated the dynamics of the elements that are more likely to affect fish production and cause undesirable environmental impacts (nitrogen, phosphorus and oxygen) to a fish growth model based on the Dynamic Energy Budget approach. The biogeochemical sub-model successfully simulated most water column and sediment variables. A good model fit was also found between predicted and observed white seabream (Diplodus sargus) growth data over a production cycle. In order to optimize fish production, different management scenarios were analysed with the model (e.g. increase stocking densities, decrease/increase water exchange rates, decrease/increase feeding rates, decrease phosphorus content in fish feeds, increase food assimilation efficiency and decrease pellets sinking velocity) to test their effects on the pond environment as well as on fish yields and effluent nutrient discharges. Scenarios were quantitatively evaluated and compared using the Analytical Hierarchical Process (AHP) methodology. The best management options that allow the maximization of fish production while maintaining a good pond environment and minimum impacts on the adjacent coastal system were to double standard stocking densities and to improve food assimilation efficiency.

  6. Empirical approaches to more accurately predict benthic-pelagic coupling in biogeochemical ocean models

    NASA Astrophysics Data System (ADS)

    Dale, Andy; Stolpovsky, Konstantin; Wallmann, Klaus

    2016-04-01

    The recycling and burial of biogenic material in the sea floor plays a key role in the regulation of ocean chemistry. Proper consideration of these processes in ocean biogeochemical models is becoming increasingly recognized as an important step in model validation and prediction. However, the rate of organic matter remineralization in sediments and the benthic flux of redox-sensitive elements are difficult to predict a priori. In this communication, examples of empirical benthic flux models that can be coupled to earth system models to predict sediment-water exchange in the open ocean are presented. Large uncertainties hindering further progress in this field include knowledge of the reactivity of organic carbon reaching the sediment, the importance of episodic variability in bottom water chemistry and particle rain rates (for both the deep-sea and margins) and the role of benthic fauna. How do we meet the challenge?

  7. Biogeochemical Process Comparison of the Five USGS Water, Energy, and Biogeochemical Budget (WEBB) Sites

    NASA Astrophysics Data System (ADS)

    Shanley, J. B.; Peters, N. E.; Aulenbach, B. T.; Blum, A. E.; Campbell, D. H.; Clow, D. W.; Larsen, M. C.; Mast, M. A.; Stallard, R. F.; Troester, J. W.; Walker, J. F.; Webb, R. M.; White, A. F.

    2001-12-01

    Input - output budgets (in wet deposition and streamwater) have been constructed for water and major solutes at the five USGS Water, Energy, and Biogeochemical Budget (WEBB) sites for the period 1992-97 (Peters et al., 2000). In this poster we interpret the net chemical fluxes to identify the controlling biogeochemical processes, as influenced by the strong physical and biological contrasts (climate, geology, physiography, and vegetation types) in the five diverse environments. The five sites are: Allequash Creek, Wisconsin (low-relief humid continental forest); Andrews Creek, Colorado (cold alpine, taiga/tundra, and subalpine boreal forest); Icacos River, Puerto Rico (lower montane, wet tropical forest); Panola Mountain, Georgia (humid subtropical piedmont forest); and Sleepers River, Vermont (humid northern hardwood forest). Base cations and Si produced by chemical weathering displayed a net export at each site. The magnitude and stoichiometry of export reflects mineralogy, climate (temperature and rainfall), and water residence time in the subsurface. The lowest and highest mass export generally was for Andrews Creek and Icacos River, respectively, consistent with their extreme mean annual temperatures (0/degC in Colorado to 21/degC in Puerto Rico) and the limited residence time of meltwater at Andrews Creek. Calcite in bedrock at the three coldest watersheds caused somewhat higher relative export of Ca, especially at Sleepers River where calcite weathering is a dominant control on stream chemistry. In contrast, the high Mg content of the volcaniclastic rocks at Icacos River and glacial deposits at Allequash Creek caused disproportionately high Mg export relative to the other sites. Relatively high Na export at Panola Mountain and K export at Sleepers River are probably caused by plagioclase and biotite weathering, respectively. SO4 is retained at the two warmest sites, Panola Mountain and Icacos River. SO4 adsorption is known to limit SO4- export in highly

  8. Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes.

    PubMed

    Long, Philip E; Williams, Kenneth H; Hubbard, Susan S; Banfield, Jillian F

    2016-08-01

    Microorganisms play key roles in terrestrial system processes, including the turnover of natural organic carbon, such as leaf litter and woody debris that accumulate in soils and subsurface sediments. What has emerged from a series of recent DNA sequencing-based studies is recognition of the enormous variety of little known and previously unknown microorganisms that mediate recycling of these vast stores of buried carbon in subsoil compartments of the terrestrial system. More importantly, the genome resolution achieved in these studies has enabled association of specific members of these microbial communities with carbon compound transformations and other linked biogeochemical processes-such as the nitrogen cycle-that can impact the quality of groundwater, surface water, and atmospheric trace gas concentrations. The emerging view also emphasizes the importance of organism interactions through exchange of metabolic byproducts (e.g., within the carbon, nitrogen, and sulfur cycles) and via symbioses since many novel organisms exhibit restricted metabolic capabilities and an associated extremely small cell size. New, genome-resolved information reshapes our view of subsurface microbial communities and provides critical new inputs for advanced reactive transport models. These inputs are needed for accurate prediction of feedbacks in watershed biogeochemical functioning and their influence on the climate via the fluxes of greenhouse gases, CO2, CH4, and N2O.

  9. Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes.

    PubMed

    Long, Philip E; Williams, Kenneth H; Hubbard, Susan S; Banfield, Jillian F

    2016-08-01

    Microorganisms play key roles in terrestrial system processes, including the turnover of natural organic carbon, such as leaf litter and woody debris that accumulate in soils and subsurface sediments. What has emerged from a series of recent DNA sequencing-based studies is recognition of the enormous variety of little known and previously unknown microorganisms that mediate recycling of these vast stores of buried carbon in subsoil compartments of the terrestrial system. More importantly, the genome resolution achieved in these studies has enabled association of specific members of these microbial communities with carbon compound transformations and other linked biogeochemical processes-such as the nitrogen cycle-that can impact the quality of groundwater, surface water, and atmospheric trace gas concentrations. The emerging view also emphasizes the importance of organism interactions through exchange of metabolic byproducts (e.g., within the carbon, nitrogen, and sulfur cycles) and via symbioses since many novel organisms exhibit restricted metabolic capabilities and an associated extremely small cell size. New, genome-resolved information reshapes our view of subsurface microbial communities and provides critical new inputs for advanced reactive transport models. These inputs are needed for accurate prediction of feedbacks in watershed biogeochemical functioning and their influence on the climate via the fluxes of greenhouse gases, CO2, CH4, and N2O. PMID:27156744

  10. [DNDC model, a model of biogeochemical processes: Research progress and applications].

    PubMed

    Guo, Jia-Wei; Zou, Yuan-Chun; Huo, Li-Li; Lü, Xian-Guo

    2013-02-01

    Denitrification-decomposition (DNDC) model can estimate the emission fluxes of soil trace gases such as carbon dioxide (CO2), methane (CH4) , and nitrous oxide (N2O) via the coupling of the denitrification and decomposition processes driven by soil environmental factors. At present, DNDC model is one of the most successful models in the world in simulating the terrestrial biogeochemical cycles. This paper mainly reviewed the development process of the DNDC model, its structure, model validation, and sensitive factor analysis, and summarized the hot fields in the applications of the model.

  11. Numerical modeling of watershed-scale radiocesium transport coupled with biogeochemical cycling in forests

    NASA Astrophysics Data System (ADS)

    Mori, K.; Tada, K.; Tawara, Y.; Tosaka, H.; Ohno, K.; Asami, M.; Kosaka, K.

    2015-12-01

    Since the Fukushima Dai-ichi Nuclear Power Plant (FDNPP) accident, intensive monitoring and modeling works on radionuclide transfer in environment have been carried out. Although Cesium (Cs) concentration has been attenuating due to both physical and environmental half-life (i.e., wash-off by water and sediment), the attenuation rate depends clearly on the type of land use and land cover. In the Fukushima case, studying the migration in forest land use is important for predicting the long-term behavior of Cs because most of the contaminated region is covered by forests. Atmospheric fallout is characterized by complicated behavior in biogeochemical cycle in forests which can be described by biotic/abiotic interactions between many components. In developing conceptual and mathematical model on Cs transfer in forest ecosystem, defining the dominant components and their interactions are crucial issues (BIOMASS, 1997-2001). However, the modeling of fate and transport in geosphere after Cs exports from the forest ecosystem is often ignored. An integrated watershed modeling for simulating spatiotemporal redistribution of Cs that includes the entire region from source to mouth and surface to subsurface, has been recently developed. Since the deposited Cs can migrate due to water and sediment movement, the different species (i.e., dissolved and suspended) and their interactions are key issues in the modeling. However, the initial inventory as source-term was simplified to be homogeneous and time-independent, and biogeochemical cycle in forests was not explicitly considered. Consequently, it was difficult to evaluate the regionally-inherent characteristics which differ according to land uses, even if the model was well calibrated. In this study, we combine the different advantages in modeling of forest ecosystem and watershed. This enable to include more realistic Cs deposition and time series of inventory can be forced over the land surface. These processes are integrated

  12. Hydrological Perturbations Drive Biogeochemical Processes in Experimental Soil Columns from the Norman Landfill Site

    NASA Astrophysics Data System (ADS)

    Arora, B.; Mohanty, B. P.; McGuire, J. T.

    2010-12-01

    Fate and transport of contaminants in saturated and unsaturated zones is governed by biogeochemical processes that are complex and non-linearly coupled to each other. A fundamental understanding of the interactions between transport and reaction processes is essential to better characterize contaminant movement in the subsurface. The objectives of this study are to: i) develop quantitative relationships between hydrological (initial and boundary conditions, hydraulic conductivity ratio, and soil layering), geochemical (mineralogy, surface area, redox potential, and organic matter) and microbiological factors (MPN) that alter the biogeochemical processes, and ii) characterize the effect of hydrologic perturbations on coupled processes occurring at the column scale. The perturbations correspond to rainfall intensity, duration of wet and dry conditions, and water chemistry (pH). Soils collected from two locations with significantly different geochemistry at the Norman landfill site are used in this study. Controlled flow experiments were conducted on: i) two homogeneous soil columns, ii) a layered soil column, iii) a soil column with embedded clay lenses, and iv) a soil column with embedded clay lenses and one central macropore. Experimental observations showed enhanced biogeochemical activity at the interface of the layered and lensed columns over the texturally homogeneous soil columns. Multivariate statistical analysis showed that the most important processes were microbial reduction of Fe(III) and SO42-, and oxidation of reduced products in the columns. Modeling results from HP1 indicate least redox activity in the homogeneous sand column while the structurally heterogeneous columns utilize oxygen and nitrate from recharge as well as iron sulfide minerals already present in the columns as electron acceptors. Furthermore, the interface of the layered and lensed soil columns acts as a hotspot of biogeochemical activity due to increased transport timescale as a

  13. High resolution modelling of the biogeochemical processes in the eutrophic Loire River (France)

    NASA Astrophysics Data System (ADS)

    Minaudo, Camille; Moatar, Florentina; Curie, Florence; Gassama, Nathalie; Billen, Gilles

    2016-04-01

    A biogeochemical model was developed, coupling a physically based water temperature model (T-NET) with a semi-mechanistic biogeochemical model (RIVE, used in ProSe and Riverstrahler models) in order to assess at a fine temporal and spatial resolution the biogeochemical processes in the eutrophic Middle Loire hydrosystem (≈10 000 km², 3361 river segments). The code itself allows parallelized computing, which decreased greatly the calculation time (5 hours for simulating 3 years hourly). We conducted a daily survey during the period 2012-2014 at 2 sampling stations located in the Middle Loire of nutrients, chlorophyll pigments, phytoplankton and physic-chemical variables. This database was used as both input data (upstream Loire boundary) and validation data of the model (basin outlet). Diffuse and non-point sources were assessed based on a land cover analysis and WWTP datasets. The results appeared very sensible to the coefficients governing the dynamic of suspended solids and of phosphorus (sorption/desorption processes) within the model and some parameters needed to be estimated numerically. Both the Lagrangian point of view and fluxes budgets at the seasonal and event-based scale evidenced the biogeochemical functioning of the Loire River. Low discharge levels set up favorable physical conditions for phytoplankton growth (long water travel time, limited water depth, suspended particles sedimentation). Conversely, higher discharge levels highly limited the phytoplankton biomass (dilution of the colony, washing-out, limited travel time, remobilization of suspended sediments increasing turbidity), and most biogeochemical species were basically transferred downstream. When hydrological conditions remained favorable for phytoplankton development, P-availability was the critical factor. However, the model evidenced that most of the P in summer was recycled within the water body: on one hand it was assimilated by the algae biomass, and on the other hand it was

  14. Impacts of Hydrological and Biogeochemical Process Synchrony Transcend Scale

    NASA Astrophysics Data System (ADS)

    Spence, C.; Kokelj, S.; McCluskie, M.; Hedstrom, N.

    2015-12-01

    In portions of the circumpolar north, there are documented cases of increases in annual inorganic nitrogen loading. Confounding the explanation of this phenomenon is a lack of accompanying annual trends in streamflow, precipitation or atmospheric nitrogen deposition. Evidence from Canada's subarctic suggests this dichotomy could be due to three key non-linearities in the predominant biogeochemical and hydrological processes. Because snowfall changes to rainfall near the zero degree air temperature isotherm, there has been an increase in late autumn rainfall across the region due to earlier passage of precipitation generating cold fronts. Runoff generation in cold regions is often a storage threshold-mediated process, and the enhanced rainfall results in more common exceedance of these thresholds and higher winter streamflow. Finally, net mineralization rates in regional lakes peak in winter following the onset of ice cover. Subtle increases in monthly rainfall at specific times of the year can permit hydro-chemical process synchrony within watersheds that enhances annual inorganic nitrogen loading, implying that the impacts of process synchrony transcend scale. The presence of shifts in nitrogen export suggests that sustained regular process synchrony can modify system states. Sound understanding of system processes and interactions across scales will be needed to properly predict impacts and make sound decisions when managing watersheds and competing resource demands.

  15. Hyporheic flow and transport processes: mechanisms, models, and biogeochemical implications

    USGS Publications Warehouse

    Boano, Fulvio; Harvey, Judson W.; Marion, Andrea; Packman, Aaron I.; Revelli, Roberto; Ridolfi, Luca; Anders, Wörman

    2014-01-01

    Fifty years of hyporheic zone research have shown the important role played by the hyporheic zone as an interface between groundwater and surface waters. However, it is only in the last two decades that what began as an empirical science has become a mechanistic science devoted to modeling studies of the complex fluid dynamical and biogeochemical mechanisms occurring in the hyporheic zone. These efforts have led to the picture of surface-subsurface water interactions as regulators of the form and function of fluvial ecosystems. Rather than being isolated systems, surface water bodies continuously interact with the subsurface. Exploration of hyporheic zone processes has led to a new appreciation of their wide reaching consequences for water quality and stream ecology. Modern research aims toward a unified approach, in which processes occurring in the hyporheic zone are key elements for the appreciation, management, and restoration of the whole river environment. In this unifying context, this review summarizes results from modeling studies and field observations about flow and transport processes in the hyporheic zone and describes the theories proposed in hydrology and fluid dynamics developed to quantitatively model and predict the hyporheic transport of water, heat, and dissolved and suspended compounds from sediment grain scale up to the watershed scale. The implications of these processes for stream biogeochemistry and ecology are also discussed."

  16. Hyporheic flow and transport processes: Mechanisms, models, and biogeochemical implications

    NASA Astrophysics Data System (ADS)

    Boano, F.; Harvey, J. W.; Marion, A.; Packman, A. I.; Revelli, R.; Ridolfi, L.; Wörman, A.

    2014-12-01

    Fifty years of hyporheic zone research have shown the important role played by the hyporheic zone as an interface between groundwater and surface waters. However, it is only in the last two decades that what began as an empirical science has become a mechanistic science devoted to modeling studies of the complex fluid dynamical and biogeochemical mechanisms occurring in the hyporheic zone. These efforts have led to the picture of surface-subsurface water interactions as regulators of the form and function of fluvial ecosystems. Rather than being isolated systems, surface water bodies continuously interact with the subsurface. Exploration of hyporheic zone processes has led to a new appreciation of their wide reaching consequences for water quality and stream ecology. Modern research aims toward a unified approach, in which processes occurring in the hyporheic zone are key elements for the appreciation, management, and restoration of the whole river environment. In this unifying context, this review summarizes results from modeling studies and field observations about flow and transport processes in the hyporheic zone and describes the theories proposed in hydrology and fluid dynamics developed to quantitatively model and predict the hyporheic transport of water, heat, and dissolved and suspended compounds from sediment grain scale up to the watershed scale. The implications of these processes for stream biogeochemistry and ecology are also discussed.

  17. Nitrate attenuation in groundwater: a review of biogeochemical controlling processes.

    PubMed

    Rivett, Michael O; Buss, Stephen R; Morgan, Philip; Smith, Jonathan W N; Bemment, Chrystina D

    2008-10-01

    Biogeochemical processes controlling nitrate attenuation in aquifers are critically reviewed. An understanding of the fate of nitrate in groundwater is vital for managing risks associated with nitrate pollution, and to safeguard groundwater supplies and groundwater-dependent surface waters. Denitrification is focused upon as the dominant nitrate attenuation process in groundwater. As denitrifying bacteria are essentially ubiquitous in the subsurface, the critical limiting factors are oxygen and electron donor concentration and availability. Variability in other environmental conditions such as nitrate concentration, nutrient availability, pH, temperature, presence of toxins and microbial acclimation appears to be less important, exerting only secondary influences on denitrification rates. Other nitrate depletion mechanisms such as dissimilatory nitrate reduction to ammonium and assimilation of nitrate into microbial biomass are unlikely to be important in most subsurface settings relative to denitrification. Further research is recommended to improve current understanding on the influence of organic carbon, sulphur and iron electron donors, physical restrictions on microbial activity in dual porosity aquifers, influences of environmental condition (e.g. pH in poorly buffered environments and salinity in coastal or salinized soil settings), co-contaminant influences (particularly the contrasting inhibitory and electron donor influences of pesticides) and improved quantification of denitrification rates in the laboratory and field.

  18. A Coupled Model of Multiphase Flow, Reactive Biogeochemical Transport, Thermal Transport and Geo-Mechanics.

    NASA Astrophysics Data System (ADS)

    Tsai, C. H.; Yeh, G. T.

    2015-12-01

    In this investigation, a coupled model of multiphase flow, reactive biogeochemical transport, thermal transport and geo-mechanics in subsurface media is presented. It iteratively solves the mass conservation equation for fluid flow, thermal transport equation for temperature, reactive biogeochemical transport equations for concentration distributions, and solid momentum equation for displacement with successive linearization algorithm. With species-based equations of state, density of a phase in the system is obtained by summing up concentrations of all species. This circumvents the problem of having to use empirical functions. Moreover, reaction rates of all species are incorporated in mass conservation equation for fluid flow. Formation enthalpy of all species is included in the law of energy conservation as a source-sink term. Finite element methods are used to discretize the governing equations. Numerical experiments are presented to examine the accuracy and robustness of the proposed model. The results demonstrate the feasibility and capability of present model in subsurface media.

  19. South Florida wetlands ecosystem; biogeochemical processes in peat

    USGS Publications Warehouse

    Orem, William; ,

    1996-01-01

    The South Florida wetlands ecosystem is an environment of great size and ecological diversity (figs. 1 and 2). The landscape diversity and subtropical setting of this ecosystem provide a habitat for an abundance of plants and wildlife, some of which are unique to South Florida. South Florida wetlands are currently in crisis, however, due to the combined effects of agriculture, urbanization, and nearly 100 years of water management. Serious problems facing this ecosystem include (1) phosphorus contamination producing nutrient enrichment, which is causing changes in the native vegetation, (2) methylmercury contamination of fish and other wildlife, which poses a potential threat to human health, (3) changes in the natural flow of water in the region, resulting in more frequent drying of wetlands, loss of organic soils, and a reduction in freshwater flow to Florida Bay, (4) hypersalinity, massive algal blooms, and seagrass loss in parts of Florida Bay, and (5) a decrease in wildlife populations, especially those of wading birds. This U.S. Geological Survey (USGS) project focuses on the role of organic-rich sediments (peat) of South Florida wetlands in regulating the concentrations and impact of important chemical species in the environment. The cycling of carbon, nitrogen, phosphorus, and sulfur in peat is an important factor in the regulation of water quality in the South Florida wetlands ecosystem. These elements are central to many of the contamination issues facing South Florida wetlands, such as nutrient enrichment, mercury toxicity, and loss of peat. Many important chemical and biological reactions occur in peat and control the fate of chemical species in wetlands. Wetland scientists often refer to these reactions as biogeochemical processes, because they are chemical reactions usually mediated by microorganisms in a geological environment. An understanding of the biogeochemical processes in peat of South Florida wetlands will provide a basis for evaluating the

  20. Simulating anchovy's full life cycle in the northern Aegean Sea (eastern Mediterranean): A coupled hydro-biogeochemical-IBM model

    NASA Astrophysics Data System (ADS)

    Politikos, D.; Somarakis, S.; Tsiaras, K. P.; Giannoulaki, M.; Petihakis, G.; Machias, A.; Triantafyllou, G.

    2015-11-01

    A 3-D full life cycle population model for the North Aegean Sea (NAS) anchovy stock is presented. The model is two-way coupled with a hydrodynamic-biogeochemical model (POM-ERSEM). The anchovy life span is divided into seven life stages/age classes. Embryos and early larvae are passive particles, but subsequent stages exhibit active horizontal movements based on specific rules. A bioenergetics model simulates the growth in both the larval and juvenile/adult stages, while the microzooplankton and mesozooplankton fields of the biogeochemical model provide the food for fish consumption. The super-individual approach is adopted for the representation of the anchovy population. A dynamic egg production module, with an energy allocation algorithm, is embedded in the bioenergetics equation and produces eggs based on a new conceptual model for anchovy vitellogenesis. A model simulation for the period 2003-2006 with realistic initial conditions reproduced well the magnitude of population biomass and daily egg production estimated from acoustic and daily egg production method (DEPM) surveys, carried out in the NAS during June 2003-2006. Model simulated adult and egg habitats were also in good agreement with observed spatial distributions of acoustic biomass and egg abundance in June. Sensitivity simulations were performed to investigate the effect of different formulations adopted for key processes, such as reproduction and movement. The effect of the anchovy population on plankton dynamics was also investigated, by comparing simulations adopting a two-way or a one-way coupling of the fish with the biogeochemical model.

  1. Characterizing biogeochemical processes in the hyporheic zone using flume experiments and reactive transport modeling

    NASA Astrophysics Data System (ADS)

    Quick, A. M.; Reeder, W. J.; Farrell, T. B.; Feris, K. P.; Tonina, D.; Benner, S. G.

    2015-12-01

    The hyporheic zones of streams are hotspots of biogeochemical cycling, where reactants from surface water and groundwater are continually brought into contact with microbial populations on the surfaces of stream sediments and reaction products are removed by hyporheic flow and degassing. Using large flume experiments we have documented the complex redox dynamics associated with dune-scale hyporheic flow. Observations, coupled with reactive transport modeling, provide insight into how flow dictates spatio-temporal distribution of redox reactions and the associated consumption and production of reactants and products. Dune hyporheic flow was experimentally produced by maintaining control over flow rates, slopes, sediment grain size, bedform geomorphology, and organic carbon content. An extensive in-situ monitoring array combined with sampling events over time elucidated redox-sensitive processes including constraints on the spatial distribution and magnitude of aerobic respiration, organic carbon consumption, sulfide deposition, and denitrification. Reactive transport modeling reveals further insight into the influence of system geometry and reaction rate. As an example application of the model, the relationship between residence times and reaction rates may be used to generate Damköhler numbers that are related to biogeochemical processes, such as the potential of streambed morphology and nitrate loading to influence production of the greenhouse gas nitrous oxide via incomplete denitrification.

  2. Integrating turbulent flow, biogeochemical, and poromechanical processes in rippled coastal sediment (Invited)

    NASA Astrophysics Data System (ADS)

    Cardenas, M. B.; Cook, P. L.; Jiang, H.; Traykovski, P.

    2010-12-01

    Coastal sediments are the locus of multiple coupled processes. Turbulent flow associated with waves and currents induces porewater flow through sediment leading to fluid exchange with the water column. This porewater flow is determined by the hydraulic and elastic properties of the sediment. Porewater flow also ultimately controls biogeochemical reactions in the sediment whose rates depend on delivery of reactants and export of products. We present results from numerical modeling studies directed at integrating these processes with the goal of shedding light on these complex environments. We show how denitrification rates inside ripples are largest at intermediate permeability which represents the optimal balance of reactant delivery and anoxic conditions. It is clear that nutrient cycling and distribution within the sediment is strongly dependent on the character of the multidimensional flow field inside of sediment. More recent studies illustrate the importance of the elastic properties of the saturated sediment on modulating fluid exchange between the water column and the sediment when pressure fluctuations along the sediment-water interface occur at the millisecond scale. Pressure fluctuations occur at this temporal scale due to turbulence and associated shedding of vortices due to the ripple geometry. This suggests that biogeochemical cycling may also be affected by these high-frequency elastic effects. Future studies should be directed towards this and should take advantage of modeling tools such as those we present.

  3. Silicon biogeochemical processes in a large river (Cauvery, India)

    NASA Astrophysics Data System (ADS)

    Kameswari Rajasekaran, Mangalaa; Arnaud, Dapoigny; Jean, Riotte; Sarma Vedula, V. S. S.; Nittala, S. Sarma; Sankaran, Subramanian; Gundiga Puttojirao, Gurumurthy; Keshava, Balakrishna; Cardinal, Damien

    2016-04-01

    Silicon (Si), one of the key nutrients for diatom growth in ocean, is principally released during silicate weathering on continents and then exported by rivers. Phytoplankton composition is determined by the availability of Si relative to other nutrients, mainly N and P, which fluxes in estuarine and coastal systems are affected by eutrophication due to land use and industrialization. In order to understand the biogeochemical cycle of Si and its supply to the coastal ocean, we studied a tropical monsoonal river from Southern India (Cauvery) and compare it with other large and small rivers. Cauvery is the 7th largest river in India with a basin covering 85626 sq.km. The major part of the basin (˜66%) is covered by agriculture and inhabited by more than 30 million inhabitants. There are 96 dams built across the basin. As a consequence, 80% of the historical discharge is diverted, mainly for irrigation (Meunier et al. 2015). This makes the Cauvery River a good example of current anthropogenic pressure on silicon biogeochemical cycle. We measured amorphous silica contents (ASi) and isotopic composition of dissolved silicon (δ30Si-DSi) in the Cauvery estuary, including freshwater end-member and groundwater as well as along a 670 km transect along the river course. Other Indian rivers and estuaries have also been measured, including some less impacted by anthropogenic pressure. The average Cauvery δ30Si signature just upstream the estuary is 2.21±0.15 ‰ (n=3) which is almost 1‰ heavier than the groundwater isotopic composition (1.38±0.03). The δ30Si-DSi of Cauvery water is also almost 1‰ heavier than the world river supply to the ocean estimated so far and 0.4‰ heavier than other large Indian rivers like Ganges (Frings et al 2015) and Krishna. On the other hand, the smaller watersheds (Ponnaiyar, Vellar, and Penna) adjacent to Cauvery also display heavy δ30Si-DSi. Unlike the effect of silicate weathering, the heavy isotopic compositions in the river

  4. CALIBRATION OF SUBSURFACE BATCH AND REACTIVE-TRANSPORT MODELS INVOLVING COMPLEX BIOGEOCHEMICAL PROCESSES

    EPA Science Inventory

    In this study, the calibration of subsurface batch and reactive-transport models involving complex biogeochemical processes was systematically evaluated. Two hypothetical nitrate biodegradation scenarios were developed and simulated in numerical experiments to evaluate the perfor...

  5. A Coupled Ocean General Circulation, Biogeochemical, and Radiative Model of the Global Oceans: Seasonal Distributions of Ocean Chlorophyll and Nutrients

    NASA Technical Reports Server (NTRS)

    Gregg, Watson W.; Busalacchi, Antonio (Technical Monitor)

    2000-01-01

    A coupled ocean general circulation, biogeochemical, and radiative model was constructed to evaluate and understand the nature of seasonal variability of chlorophyll and nutrients in the global oceans. Biogeochemical processes in the model are determined from the influences of circulation and turbulence dynamics, irradiance availability. and the interactions among three functional phytoplankton groups (diatoms. chlorophytes, and picoplankton) and three nutrients (nitrate, ammonium, and silicate). Basin scale (greater than 1000 km) model chlorophyll results are in overall agreement with CZCS pigments in many global regions. Seasonal variability observed in the CZCS is also represented in the model. Synoptic scale (100-1000 km) comparisons of imagery are generally in conformance although occasional departures are apparent. Model nitrate distributions agree with in situ data, including seasonal dynamics, except for the equatorial Atlantic. The overall agreement of the model with satellite and in situ data sources indicates that the model dynamics offer a reasonably realistic simulation of phytoplankton and nutrient dynamics on synoptic scales. This is especially true given that initial conditions are homogenous chlorophyll fields. The success of the model in producing a reasonable representation of chlorophyll and nutrient distributions and seasonal variability in the global oceans is attributed to the application of a generalized, processes-driven approach as opposed to regional parameterization and the existence of multiple phytoplankton groups with different physiological and physical properties. These factors enable the model to simultaneously represent many aspects of the great diversity of physical, biological, chemical, and radiative environments encountered in the global oceans.

  6. Diel biogeochemical processes and their effect on the aqueous chemistry of streams: A review

    USGS Publications Warehouse

    Nimick, David A.; Gammons, Christopher H.; Parker, Stephen R.

    2011-01-01

    This review summarizes biogeochemical processes that operate on diel, or 24-h, time scales in streams and the changes in aqueous chemistry that are associated with these processes. Some biogeochemical processes, such as those producing diel cycles of dissolved O2 and pH, were the first to be studied, whereas processes producing diel concentration cycles of a broader spectrum of chemical species including dissolved gases, dissolved inorganic and organic carbon, trace elements, nutrients, stable isotopes, and suspended particles have received attention only more recently. Diel biogeochemical cycles are interrelated because the cyclical variations produced by one biogeochemical process commonly affect another. Thus, understanding biogeochemical cycling is essential not only for guiding collection and interpretation of water-quality data but also for geochemical and ecological studies of streams. Expanded knowledge of diel biogeochemical cycling will improve understanding of how natural aquatic environments function and thus lead to better predictions of how stream ecosystems might react to changing conditions of contaminant loading, eutrophication, climate change, drought, industrialization, development, and other factors.

  7. Prospecting for natural attenuation: Coupled geophysical-biogeochemical studies at DOE's Rifle IFRC site

    NASA Astrophysics Data System (ADS)

    Williams, K. H.; Kukkadapu, R. K.; Long, P. E.; Flores Orozco, A.; Kemna, A.

    2011-12-01

    Research activities at the Rifle Integrated Field Research Challenge (IFRC) site in Rifle, Colorado (USA) are designed to integrate geochemical, biological, and hydrological studies to enhance our understanding of subsurface uranium mobility. While much of the research activities at the site have focused on stimulating subsurface microbial activity through acetate amendment, there is growing interest in the role that natural biogeochemical processes play in constraining uranium mobility in the aquifer. Such processes constitute a form of natural uranium attenuation in the subsurface and are inferred to result from elevated concentrations of natural organic matter associated with alluvial sediments. Referred to as naturally reduced zones (NRZ's), they are characterized by the presence of reduced and/or magnetic mineral phases (e.g. FeS, FeS2, and Fe3O4), elevated Fe(II), and refractory organic carbon compounds (e.g. roots, twigs, and cones). Elevated rates of microbial activity associated with NRZ's and their mineralogical makeup act to sequester uranium from groundwater at levels higher that background alluvium. Their unique composition within a matrix of relatively oxidized, low-bioactivity sediments constitutes a potential target for a variety of exploration geophysical techniques, such as induced polarization and magnetic susceptibility. Both methods have been successfully applied at the Rifle IFRC site to delineate the ubiquity and extent of NRZ's across the floodplain. Sediments recovered from drilling targets identified through the use of exploration geophysical techniques have identified elevated uranium concentrations associated with both magnetite and framboid pyrite; however, the extent to which such minerals are the direct product of in situ microbial activity remains unknown. While diverse, the microbial community composition of NRZ's suggest dominance by fermentative organisms capable of degrading lignitic carbon to low molecular weight organic

  8. Study of the plankton ecosystem variability using a coupled hydrodynamics biogeochemical modelling in the Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Kessouri, Fayçal; Ulses, Caroline; Estournel, Claude; Marsaleix, Patrick

    2015-04-01

    The Mediterranean Sea presents a wide variety of trophic regimes since the large and intense spring bloom of the North-Western Mediterranean Sea (NWMS) that follows winter convection to the extreme oligotrophic regions of the South-eastern basin. The Mediterranean Sea displays a strong time variability revealing its high sensitivity to climate and anthropic pressures. In this context, it is crucial to develop tools allowing to understand the evolution of the Mediterranean hydrology and marine ecosystem as a response to external forcing. Numerical coupled hydrodynamic and biogeochemical modelling carefully calibrated in the different regions of the basin is the only tool that can answer this question. However, this important step of calibration is particularly difficult because of the lack of coherent sets of data describing the seasonal evolution of the main parameters characterizing the physical and biogeochemical environment in the different sub-basins. The chlorophyll satellite data from 4km MODIS products, a multiple in situ data from MerMEX MOOSE and DEWEX cruises and Bio-Argo floats from NAOS project are believed to be an opportunity to strongly improve the realism of ecosystem models. The model is a 3D coupled simulation using NemoMed12 for hydrodynamics and ECO 3MS for biogeochemistry and covers the whole Mediterranean Sea and runs at 1/12°. The relevant variables mentioned are phytoplankton, organic and inorganic matters faced to water masses dynamics, over ten years since summer 2003. After a short validation, we will expose two topics: First, through this coupling we quantify the nutrients fluxes across the Mediterranean straits over the years. For example, we found an annual net average around 150 Giga moles NO3 per year at Gibraltar, where we expect low annual fluctuations. In contrast, the Strait of Sicily shows greater annual variability going from 70 to 92 Giga moles NO3 per year. All the fluxes are resumed in a detailed diagram of the transport

  9. Carbon sequestration by patch fertilization: A comprehensive assessment using coupled physical-ecological-biogeochemical models

    SciTech Connect

    Sarmiento, Jorge L.; Gnanadesikan, Anand; Gruber, Nicolas; Jin, Xin; Armstrong, Robert

    2007-06-21

    This final report summarizes research undertaken collaboratively between Princeton University, the NOAA Geophysical Fluid Dynamics Laboratory on the Princeton University campus, the State University of New York at Stony Brook, and the University of California, Los Angeles between September 1, 2000, and November 30, 2006, to do fundamental research on ocean iron fertilization as a means to enhance the net oceanic uptake of CO2 from the atmosphere. The approach we proposed was to develop and apply a suite of coupled physical-ecological-biogeochemical models in order to (i) determine to what extent enhanced carbon fixation from iron fertilization will lead to an increase in the oceanic uptake of atmospheric CO2 and how long this carbon will remain sequestered (efficiency), and (ii) examine the changes in ocean ecology and natural biogeochemical cycles resulting from iron fertilization (consequences). The award was funded in two separate three-year installments: September 1, 2000 to November 30, 2003, for a project entitled “Ocean carbon sequestration by fertilization: An integrated biogeochemical assessment.” A final report was submitted for this at the end of 2003 and is included here as Appendix 1; and, December 1, 2003 to November 30, 2006, for a follow-on project under the same grant number entitled “Carbon sequestration by patch fertilization: A comprehensive assessment using coupled physical-ecological-biogeochemical models.” This report focuses primarily on the progress we made during the second period of funding subsequent to the work reported on in Appendix 1. When we began this project, we were thinking almost exclusively in terms of long-term fertilization over large regions of the ocean such as the Southern Ocean, with much of our focus being on how ocean circulation and biogeochemical cycling would interact to control the response to a given fertilization scenario. Our research on these types of scenarios, which was carried out largely during the

  10. Hierarchical framework for coupling a biogeochemical trace gas model to a general circulation model

    SciTech Connect

    Miller, N.L.; Foster, I.T.

    1994-04-01

    A scheme is described for the computation of terrestrial biogeochemical trace gas fluxes in the context of a general circulation model. This hierarchical system flux scheme (HSFS) incorporates five major components: (1) a general circulation model (GCM), which provides a medium-resolution (i.e., 1{degrees} by 1{degrees}) simulation of the atmospheric circulation; (2) a procedure for identifying regions of defined homogeneity of surface type within GCM grid cells; (3) a set of surface process models, to be run within each homogeneous region, which include a biophysical model, the Biosphere Atmospheric Transfer Scheme (BATS), and a biogeochemical model (BGCM); (4) an interpolation/integration system that transfers information between the GCM and surface process models with finer resolution; and (5) an interactive data array based on a geographic information system (GIS), which provides land characteristic information via the interpolator. The goals of this detailed investigation are to compute the local and global sensitivities of trace gas fluxes to GCM and BATS variables, the effects of trace gas fluxes on global climate, and the effects of global climate on specific biomes.

  11. Deriving forest fire ignition risk with biogeochemical process modelling☆

    PubMed Central

    Eastaugh, C.S.; Hasenauer, H.

    2014-01-01

    Climate impacts the growth of trees and also affects disturbance regimes such as wildfire frequency. The European Alps have warmed considerably over the past half-century, but incomplete records make it difficult to definitively link alpine wildfire to climate change. Complicating this is the influence of forest composition and fuel loading on fire ignition risk, which is not considered by purely meteorological risk indices. Biogeochemical forest growth models track several variables that may be used as proxies for fire ignition risk. This study assesses the usefulness of the ecophysiological model BIOME-BGC's ‘soil water’ and ‘labile litter carbon’ variables in predicting fire ignition. A brief application case examines historic fire occurrence trends over pre-defined regions of Austria from 1960 to 2008. Results show that summer fire ignition risk is largely a function of low soil moisture, while winter fire ignitions are linked to the mass of volatile litter and atmospheric dryness. PMID:26109905

  12. Skill assessment of the coupled physical-biogeochemical operational Mediterranean Forecasting System

    NASA Astrophysics Data System (ADS)

    Cossarini, Gianpiero; Clementi, Emanuela; Salon, Stefano; Grandi, Alessandro; Bolzon, Giorgio; Solidoro, Cosimo

    2016-04-01

    The Mediterranean Monitoring and Forecasting Centre (Med-MFC) is one of the regional production centres of the European Marine Environment Monitoring Service (CMEMS-Copernicus). Med-MFC operatively manages a suite of numerical model systems (3DVAR-NEMO-WW3 and 3DVAR-OGSTM-BFM) that provides gridded datasets of physical and biogeochemical variables for the Mediterranean marine environment with a horizontal resolution of about 6.5 km. At the present stage, the operational Med-MFC produces ten-day forecast: daily for physical parameters and bi-weekly for biogeochemical variables. The validation of the coupled model system and the estimate of the accuracy of model products are key issues to ensure reliable information to the users and the downstream services. Product quality activities at Med-MFC consist of two levels of validation and skill analysis procedures. Pre-operational qualification activities focus on testing the improvement of the quality of a new release of the model system and relays on past simulation and historical data. Then, near real time (NRT) validation activities aim at the routinely and on-line skill assessment of the model forecast and relays on the NRT available observations. Med-MFC validation framework uses both independent (i.e. Bio-Argo float data, in-situ mooring and vessel data of oxygen, nutrients and chlorophyll, moored buoys, tide-gauges and ADCP of temperature, salinity, sea level and velocity) and semi-independent data (i.e. data already used for assimilation, such as satellite chlorophyll, Satellite SLA and SST and in situ vertical profiles of temperature and salinity from XBT, Argo and Gliders) We give evidence that different variables (e.g. CMEMS-products) can be validated at different levels (i.e. at the forecast level or at the level of model consistency) and at different spatial and temporal scales. The fundamental physical parameters temperature, salinity and sea level are routinely validated on daily, weekly and quarterly base

  13. Coupling between Pentachlorophenol Dechlorination and Soil Redox As Revealed by Stable Carbon Isotope, Microbial Community Structure, and Biogeochemical Data.

    PubMed

    Xu, Yan; He, Yan; Zhang, Qian; Xu, Jianming; Crowley, David

    2015-05-01

    Carbon isotopic analysis and molecular-based methods were used in conjunction with geochemical data sets to assess the dechlorination of pentachlorophenol (PCP) when coupled to biogeochemical processes in a mangrove soil having no prior history of anthropogenic contamination. The PCP underwent 96% dechlorination in soil amended with acetate, compared to 21% dehalogenation in control soil. Carbon isotope analysis of residual PCP demonstrated an obvious enrichment of 13C (εC, -3.01±0.1%). Molecular and statistical analyses demonstrated that PCP dechlorination and Fe(III) reduction were synergistically combined electron-accepting processes. Microbial community analysis further suggested that enhanced dechlorination of PCP during Fe(III) reduction was mediated by members of the multifunctional family of Geobacteraceae. In contrast, PCP significantly suppressed the growth of SO4(2-) reducers, which, in turn, facilitated the production of CH4 by diversion of electrons from SO4(2-) reduction to methanogenesis. The integrated data regarding stoichiometric alterations in this study gives direct evidence showing PCP, Fe(III), and SO4(2-) reduction, and CH4 production are coupled microbial processes during changes in soil redox. PMID:25853431

  14. The value of automated high-frequency nutrient monitoring in inference of biogeochemical processes, temporal variability and trends

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Heathwaite, Louise

    2013-04-01

    Stream water quality signals integrate catchment-scale processes responsible for delivery and biogeochemical transformation of the key biotic macronutrients (N, C, P). This spatial and temporal integration is particularly pronounced in the groundwater-dominated streams, as in-stream nutrient dynamics are mediated by the processes occurring within riparian and hyporheic ecotones. In this paper we show long-term high-frequency in-stream macronutrient dynamics from a small agricultural catchment located in the North West England. Hourly in-situ measurements of total and reactive phosphorus (Systea, IT), nitrate (Hach Lange, DE) and physical water quality parameters (turbidity, specific conductivity, dissolved oxygen, temperature, pH; WaterWatch, UK) were carried out on the lowland, gaining reach of the River Leith. High-frequency data show complex non-linear nutrient concentration-discharge relationships. The dominance of hysteresis effects suggests the presence of a temporally varying apportionment of allochthonous and autochthonous nutrient sources. Varying direction, magnitude and dynamics of the hysteretic responses between storm events is driven by the variation in the contributing source areas and shows the importance of the coupling of catchment-scale, in-stream, riparian and hyporheic biogeochemical cycles. The synergistic effect of physical (temperature-driven, the hyporheic exchange controlled by diffusion) and biogeochemical drivers (stream and hyporheic metabolism) on in-stream nutrient concentrations manifests itself in observed diurnal patterns. As inferred from the high-frequency nutrient monitoring, the diurnal dynamics are of the greatest importance under baseflow conditions. Understanding the role and relative importance of these processes can be difficult due to spatial and temporal heterogeneity of the key mechanisms involved. This study shows the importance of in-situ, fine temporal resolution, automated monitoring approaches in providing evidence

  15. Biogeochemical Processes Controlling Microbial Reductive Precipitation of Radionuclides

    SciTech Connect

    Fredrickson, James K.; Brooks, Scott C.

    2004-03-17

    This project is focused on elucidating the principal biogeochemical reactions that govern the concentrations, chemical speciation, and distribution of the redox sensitive contaminants uranium (U) and technetium (Tc) between the aqueous and solid phases. The research is designed to provide new insights into the under-explored areas of competing geochemical and microbiological oxidation-reduction reactions that govern the fate and transport of redox sensitive contaminants and to generate fundamental scientific understanding of the identity and stoichiometry of competing microbial reduction and geochemical oxidation reactions. These goals and objectives are met through a series of hypothesis-driven tasks that focus on (1) the use of well-characterized microorganisms and synthetic and natural mineral oxidants, (2) advanced spectroscopic and microscopic techniques to monitor redox transformations of U and Tc, and (3) the use of flow-through experiments to more closely approximate groundwater environments. The results are providing an improved understanding and predictive capability of the mechanisms that govern the redox dynamics of radionuclides in subsurface environments. For purposes of this poster, the results are divided into three sections: (1) influence of Ca on U(VI) bioreduction; (2) localization of biogenic UO{sub 2} and TcO{sub 2}; and (3) reactivity of Mn(III/IV) oxides.

  16. Seasonal Distributions of Global Ocean Chlorophyll and Nutrients: Analysis with a Coupled Ocean General Circulation Biogeochemical, and Radiative Model

    NASA Technical Reports Server (NTRS)

    Gregg, Watson W.

    1999-01-01

    A coupled general ocean circulation, biogeochemical, and radiative model was constructed to evaluate and understand the nature of seasonal variability of chlorophyll and nutrients in the global oceans. The model is driven by climatological meteorological conditions, cloud cover, and sea surface temperature. Biogeochemical processes in the model are determined from the influences of circulation and turbulence dynamics, irradiance availability, and the interactions among three functional phytoplankton groups (diatoms, chorophytes, and picoplankton) and three nutrient groups (nitrate, ammonium, and silicate). Phytoplankton groups are initialized as homogeneous fields horizontally and vertically, and allowed to distribute themselves according to the prevailing conditions. Basin-scale model chlorophyll results are in very good agreement with CZCS pigments in virtually every global region. Seasonal variability observed in the CZCS is also well represented in the model. Synoptic scale (100-1000 km) comparisons of imagery are also in good conformance, although occasional departures are apparent. Agreement of nitrate distributions with in situ data is even better, including seasonal dynamics, except for the equatorial Atlantic. The good agreement of the model with satellite and in situ data sources indicates that the model dynamics realistically simulate phytoplankton and nutrient dynamics on synoptic scales. This is especially true given that initial conditions are homogenous chlorophyll fields. The success of the model in producing a reasonable representation of chlorophyll and nutrient distributions and seasonal variability in the global oceans is attributed to the application of a generalized, processes-driven approach as opposed to regional parameterization, and the existence of multiple phytoplankton groups with different physiological and physical properties. These factors enable the model to simultaneously represent the great diversity of physical, biological

  17. Reactive transport modelling of biogeochemical processes and carbon isotope geochemistry inside a landfill leachate plume.

    PubMed

    van Breukelen, Boris M; Griffioen, Jasper; Röling, Wilfred F M; van Verseveld, Henk W

    2004-06-01

    The biogeochemical processes governing leachate attenuation inside a landfill leachate plume (Banisveld, the Netherlands) were revealed and quantified using the 1D reactive transport model PHREEQC-2. Biodegradation of dissolved organic carbon (DOC) was simulated assuming first-order oxidation of two DOC fractions with different reactivity, and was coupled to reductive dissolution of iron oxide. The following secondary geochemical processes were required in the model to match observations: kinetic precipitation of calcite and siderite, cation exchange, proton buffering and degassing. Rate constants for DOC oxidation and carbonate mineral precipitation were determined, and other model parameters were optimized using the nonlinear optimization program PEST by means of matching hydrochemical observations closely (pH, DIC, DOC, Na, K, Ca, Mg, NH4, Fe(II), SO4, Cl, CH4, saturation index of calcite and siderite). The modelling demonstrated the relevance and impact of various secondary geochemical processes on leachate plume evolution. Concomitant precipitation of siderite masked the act of iron reduction. Cation exchange resulted in release of Fe(II) from the pristine anaerobic aquifer to the leachate. Degassing, triggered by elevated CO2 pressures caused by carbonate precipitation and proton buffering at the front of the plume, explained the observed downstream decrease in methane concentration. Simulation of the carbon isotope geochemistry independently supported the proposed reaction network. PMID:15134877

  18. Net greenhouse gas balance in response to nitrogen enrichment: perspectives from a coupled biogeochemical model.

    PubMed

    Lu, Chaoqun; Tian, Hanqin

    2013-02-01

    Increasing reactive nitrogen (N) input has been recognized as one of the important factors influencing climate system through affecting the uptake and emission of greenhouse gases (GHG). However, the magnitude and spatiotemporal variations of N-induced GHG fluxes at regional and global scales remain far from certain. Here we selected China as an example, and used a coupled biogeochemical model in conjunction with spatially explicit data sets (including climate, atmospheric CO2 , O3 , N deposition, land use, and land cover changes, and N fertilizer application) to simulate the concurrent impacts of increasing atmospheric and fertilized N inputs on balance of three major GHGs (CO2 , CH4 , and N2 O). Our simulations showed that these two N enrichment sources in China decreased global warming potential (GWP) through stimulating CO2 sink and suppressing CH4 emission. However, direct N2 O emission was estimated to offset 39% of N-induced carbon (C) benefit, with a net GWP of three GHGs averaging -376.3 ± 146.4 Tg CO2  eq yr(-1) (the standard deviation is interannual variability of GWP) during 2000-2008. The chemical N fertilizer uses were estimated to increase GWP by 45.6 ± 34.3 Tg CO2  eq yr(-1) in the same period, and C sink was offset by 136%. The largest C sink offset ratio due to increasing N input was found in Southeast and Central mainland of China, where rapid industrial development and intensively managed crop system are located. Although exposed to the rapidly increasing N deposition, most of the natural vegetation covers were still showing decreasing GWP. However, due to extensive overuse of N fertilizer, China's cropland was found to show the least negative GWP, or even positive GWP in recent decade. From both scientific and policy perspectives, it is essential to incorporate multiple GHGs into a coupled biogeochemical framework for fully assessing N impacts on climate changes.

  19. A flexible numerical component to simulate surface runoff transport and biogeochemical processes through dense vegetation

    NASA Astrophysics Data System (ADS)

    Munoz-Carpena, R.; Perez-Ovilla, O.

    2012-12-01

    Methods to estimate surface runoff pollutant removal using dense vegetation buffers (i.e. vegetative filter strips) usually consider a limited number of factors (i.e. filter length, slope) and are in general based on empirical relationships. When an empirical approach is used, the application of the model is limited to those conditions of the data used for the regression equations. The objective of this work is to provide a flexible numerical mechanistic tool to simulate dynamics of a wide range of surface runoff pollutants through dense vegetation and their physical, chemical and biological interactions based on equations defined by the user as part of the model inputs. A flexible water quality model based on the Reaction Simulation Engine (RSE) modeling component is coupled to a transport module based on the traditional Bubnov -Galerkin finite element method to solve the advection-dispersion-reaction equation using the alternating split-operator technique. This coupled transport-reaction model is linked to the VFSMOD-W (http://abe.ufl.edu/carpena/vfsmod) program to mechanistically simulate mobile and stabile pollutants through dense vegetation based on user-defined conceptual models (differential equations written in XML language as input files). The key factors to consider in the creation of a conceptual model are the components in the buffer (i.e. vegetation, soil, sediments) and how the pollutant interacts with them. The biogeochemical reaction component was tested successfully with laboratory and field scale experiments. One of the major advantages when using this tool is that the pollutant transport and removal thought dense vegetation is related to physical and biogeochemical process occurring within the filter. This mechanistic approach increases the range of use of the model to a wide range of pollutants and conditions without modification of the core model. The strength of the model relies on the mechanistic approach used for simulating the removal of

  20. The Interactions between Biogeophysical and Biogeochemical Processes and their Feedbacks on Permafrost Soil Carbon Stocks

    NASA Astrophysics Data System (ADS)

    Jain, A. K.; El Masri, B.; Barman, R.; Shu, S.; Song, Y.

    2014-12-01

    One of the major challenges in more detailed Earth system models (ESMs) is the treatment of the biophysical and biogeochemical processes and feedbacks and their impact on soil organic carbon in the Northern high latitudes (NHL). We use a land surface model, the Integrated Science Assessment Model (ISAM) to investigate the effects of feedbacks between the biogeochemical and biogeophysical processes on the model estimated soil organic carbon (SOC) for the NHL permafrost region. We not only focus on recent model improvements in the biogeophysical processes that are deemed important for the high latitude soils/snow; such as deep soil column, modulation of soil thermal and hydrological properties, wind compaction of snow, and depth hoar formation; on permafrost SOC; but also biogeochemical processes; such as dynamic phenology and root distribution, litter carbon decomposition rates and nitrogen amount remaining; on soil biogeochemistry. We select multiple sites to evaluate the model. We then carried out several model simulations to study the effects of feedbacks between biogeochemical and biogeophysical processes on SOC. Our model analysis shows that including the biogeophysical processes alone could increase modeled NHL permafrost carbon by about 30% compared to measurements. Accounting for the biogeochmical processes further improve the NHL soil carbon.

  1. A Unified Multi-scale Model for Cross-Scale Evaluation and Integration of Hydrological and Biogeochemical Processes

    NASA Astrophysics Data System (ADS)

    Liu, C.; Yang, X.; Bailey, V. L.; Bond-Lamberty, B. P.; Hinkle, C.

    2013-12-01

    Mathematical representations of hydrological and biogeochemical processes in soil, plant, aquatic, and atmospheric systems vary with scale. Process-rich models are typically used to describe hydrological and biogeochemical processes at the pore and small scales, while empirical, correlation approaches are often used at the watershed and regional scales. A major challenge for multi-scale modeling is that water flow, biogeochemical processes, and reactive transport are described using different physical laws and/or expressions at the different scales. For example, the flow is governed by the Navier-Stokes equations at the pore-scale in soils, by the Darcy law in soil columns and aquifer, and by the Navier-Stokes equations again in open water bodies (ponds, lake, river) and atmosphere surface layer. This research explores whether the physical laws at the different scales and in different physical domains can be unified to form a unified multi-scale model (UMSM) to systematically investigate the cross-scale, cross-domain behavior of fundamental processes at different scales. This presentation will discuss our research on the concept, mathematical equations, and numerical execution of the UMSM. Three-dimensional, multi-scale hydrological processes at the Disney Wilderness Preservation (DWP) site, Florida will be used as an example for demonstrating the application of the UMSM. In this research, the UMSM was used to simulate hydrological processes in rooting zones at the pore and small scales including water migration in soils under saturated and unsaturated conditions, root-induced hydrological redistribution, and role of rooting zone biogeochemical properties (e.g., root exudates and microbial mucilage) on water storage and wetting/draining. The small scale simulation results were used to estimate effective water retention properties in soil columns that were superimposed on the bulk soil water retention properties at the DWP site. The UMSM parameterized from smaller

  2. Assimilation of SeaWiFS chlorophyll data into a 3D-coupled physical-biogeochemical model applied to a freshwater-influenced coastal zone

    NASA Astrophysics Data System (ADS)

    Fontana, Clément; Grenz, Christian; Pinazo, Christel; Marsaleix, Patrick; Diaz, Frédéric

    2009-06-01

    In order to predict eutrophication events in coastal areas we tested an assimilation scheme based on sequential data assimilation of SeaWiFS chlorophyll data into a coupled 3D physical-biogeochemical model. The area investigated is a semi-enclosed estuarine system (Gulf of Fos-North-western Mediterranean Sea) closely linked to the Rhone River delta. This system is subjected to episodic eutrophication caused by certain hydrodynamic conditions and intermittent nutrient inputs. The 3D hydrodynamic model Symphonie was coupled to the biogeochemical modelling platform Eco3M. Surface chlorophyll concentrations were derived from SeaWiFS data using the OC5 algorithm and were sequentially assimilated using a singular evolutive extended Kalman filter. Assimilation efficiency was evaluated through an independent in situ data set collected during a field survey that took place in May 2001 (ModelFos cruise). An original approach was used in constructing the state vector and the observation vector. By assimilating pseudo-salinity extracted from the model biogeochemical dynamics in both open sea and plume region were respected. We proved that substantial improvements were made in short-term forecasts by integrating such satellite-estimated chlorophyll maps. We showed that missing freshwater inputs could be corrected to a certain extent by the assimilation process. Simulated concentrations of surface chlorophyll and other basic components of the pelagic ecosystem such as nitrates were improved by assimilating surface chlorophyll maps. Finally we showed the coherent spatial behaviour of the filter over the whole modelled domain.

  3. Do antibiotics have environmental side-effects? Impact of synthetic antibiotics on biogeochemical processes.

    PubMed

    Roose-Amsaleg, Céline; Laverman, Anniet M

    2016-03-01

    Antibiotic use in the early 1900 vastly improved human health but at the same time started an arms race of antibiotic resistance. The widespread use of antibiotics has resulted in ubiquitous trace concentrations of many antibiotics in most environments. Little is known about the impact of these antibiotics on microbial processes or "non-target" organisms. This mini-review summarizes our knowledge of the effect of synthetically produced antibiotics on microorganisms involved in biogeochemical cycling. We found only 31 articles that dealt with the effects of antibiotics on such processes in soil, sediment, or freshwater. We compare the processes, antibiotics, concentration range, source, environment, and experimental approach of these studies. Examining the effects of antibiotics on biogeochemical processes should involve environmentally relevant concentrations (instead of therapeutic), chronic exposure (versus acute), and monitoring of the administered antibiotics. Furthermore, the lack of standardized tests hinders generalizations regarding the effects of antibiotics on biogeochemical processes. We investigated the effects of antibiotics on biogeochemical N cycling, specifically nitrification, denitrification, and anammox. We found that environmentally relevant concentrations of fluoroquinolones and sulfonamides could partially inhibit denitrification. So far, the only documented effects of antibiotic inhibitions were at therapeutic doses on anammox activities. The most studied and inhibited was nitrification (25-100 %) mainly at therapeutic doses and rarely environmentally relevant. We recommend that firm conclusions regarding inhibition of antibiotics at environmentally relevant concentrations remain difficult due to the lack of studies testing low concentrations at chronic exposure. There is thus a need to test the effects of these environmental concentrations on biogeochemical processes to further establish the possible effects on ecosystem functioning.

  4. Reservoir and contaminated sediments impacts in high-Andean environments: Morphodynamic interactions with biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Escauriaza, C. R.; Contreras, M. T.; Müllendorff, D. A.; Pasten, P.; Pizarro, G. E.

    2014-12-01

    Rapid changes due to anthropic interventions in high-altitude environments, such as the Altiplano region in South America, require new approaches to understand the connections between physical and biogeochemical processes. Alterations of the water quality linked to the river morphology can affect the ecosystems and human development in the long-term. The future construction of a reservoir in the Lluta river, located in northern Chile, will change the spatial distribution of arsenic-rich sediments, which can have significant effects on the lower parts of the watershed. In this investigation we develop a coupled numerical model to predict and evaluate the interactions between morphodynamic changes in the Lluta reservoir, and conditions that can potentially desorb arsenic from the sediments. Assuming that contaminants are mobilized under anaerobic conditions, we calculate the oxygen concentration within the sediments to study the interactions of the delta progradation with the potential arsenic release. This work provides a framework for future studies aimed to analyze the complex connections between morphodynamics and water quality, when contaminant-rich sediments accumulate in a reservoir. The tool can also help to design effective risk management and remediation strategies in these extreme environments. Research has been supported by Fondecyt grant 1130940 and CONICYT/FONDAP Grant 15110017

  5. Impact of satellite data assimilation in a coupled physical-biogeochemical model of the North Atlantic

    NASA Astrophysics Data System (ADS)

    Berline, L.; Brankart, J.-M.; Brasseur, P.

    The general objective of this work is to examine how the assimilation of data in a circulation model can improve the biological response simulated by a coupled physical-ecosystem model. In this work, the focus will be on the impact of altimetric, SST and SSS data assimilation in an eddy-permitting coupled model of the North Atlantic. The physical model is a z-coordinate, rigid lid, primitive-equation model based on the OPA code [Madec et al, 1998]. The horizontal resolution is 1/3° and there are 43 vertical levels with refinement near the surface. The biogeochemical model is the P3ZD biogeochemical model [Aumont et al., 1998] that describes the cycling of carbon, silica and calcium. The simulations are performed using realistic forcings during 1998. The assimilation method is based on a Kalman filter with reduced order error covariance matrix, known as the SEEK filter [ Pham et al., 1998]. The sequential scheme has been modified recently using the concept of "incremental analysis update" to enforce temporal continuity of the assimilation run. In order to evaluate how the assimilation can improve the representation of the biological fields, comparisons are made between free runs and simulations with assimilation. A first comparison with the assimilation run obtained using the scheme developed by Testut et al. [2003] indicates the excessive supply of nutrients in the euphotic zone through spurious mixing and advection mechanisms. This can be partly attributed to several factors, e.g. the statistical method which is unable to maintain the model constraint of hydrostatic stability, the discontinuous nature of the sequential algorithm, or the lack of consistent corrections between the physical and biological components of the state vector. Several variants of the assimilation algorithm are implemented in order to improve the representation of the model dynamics and its subsequent impact on the biological variables. A comparison between the assimilation runs obtained

  6. Anthropogenic forcing of estuarine hypoxic events in sub-tropical catchments: landscape drivers and biogeochemical processes.

    PubMed

    Wong, Vanessa N L; Johnston, Scott G; Burton, Edward D; Bush, Richard T; Sullivan, Leigh A; Slavich, Peter G

    2011-11-15

    Episodic hypoxic events can occur following summer floods in sub-tropical estuaries of eastern Australia. These events can cause deoxygenation of waterways and extensive fish mortality. Here, we present a conceptual model that links key landscape drivers and biogeochemical processes which contribute to post-flood hypoxic events. The model provides a framework for examining the nature of anthropogenic forcing. Modification of estuarine floodplain surface hydrology through the construction of extensive drainage networks emerges as a major contributing factor to increasing the frequency, magnitude and duration of hypoxic events. Forcing occurs in two main ways. Firstly, artificial drainage of backswamp wetlands initiates drier conditions which cause a shift in vegetation assemblages from wetland-dominant species to dryland-dominant species. These species, which currently dominate the floodplain, are largely intolerant of inundation and provide abundant labile substrate for decomposition following flood events. Decomposition of this labile carbon pool consumes oxygen in the overlying floodwaters, and results in anoxic conditions and waters with excess deoxygenation potential (DOP). Carbon metabolism can be strongly coupled with microbially-mediated reduction of accumulated Fe and Mn oxides, phases which are common on these coastal floodplain landscapes. Secondly, artificial drainage enhances discharge rates during the flood recession phase. Drains transport deoxygenated high DOP floodwaters rapidly from backswamp wetlands to the main river channel to further consume oxygen. This process effectively displaces the natural carbon metabolism processes from floodplain wetlands to the main channel. Management options to reduce the impacts of post-flood hypoxia include i) remodifying drainage on the floodplain to promote wetter conditions, thereby shifting vegetation assemblages towards inundation-tolerant species, and ii) strategic retention of floodwaters in the backswamp

  7. Development of a 3D Coupled Physical-Biogeochemical Model for the Marseille Coastal Area (NW Mediterranean Sea): What Complexity Is Required in the Coastal Zone?

    PubMed Central

    Fraysse, Marion; Pinazo, Christel; Faure, Vincent Martin; Fuchs, Rosalie; Lazzari, Paolo; Raimbault, Patrick; Pairaud, Ivane

    2013-01-01

    Terrestrial inputs (natural and anthropogenic) from rivers, the atmosphere and physical processes strongly impact the functioning of coastal pelagic ecosystems. The objective of this study was to develop a tool for the examination of these impacts on the Marseille coastal area, which experiences inputs from the Rhone River and high rates of atmospheric deposition. Therefore, a new 3D coupled physical/biogeochemical model was developed. Two versions of the biogeochemical model were tested, one model considering only the carbon (C) and nitrogen (N) cycles and a second model that also considers the phosphorus (P) cycle. Realistic simulations were performed for a period of 5 years (2007–2011). The model accuracy assessment showed that both versions of the model were able of capturing the seasonal changes and spatial characteristics of the ecosystem. The model also reproduced upwelling events and the intrusion of Rhone River water into the Bay of Marseille well. Those processes appeared to greatly impact this coastal oligotrophic area because they induced strong increases in chlorophyll-a concentrations in the surface layer. The model with the C, N and P cycles better reproduced the chlorophyll-a concentrations at the surface than did the model without the P cycle, especially for the Rhone River water. Nevertheless, the chlorophyll-a concentrations at depth were better represented by the model without the P cycle. Therefore, the complexity of the biogeochemical model introduced errors into the model results, but it also improved model results during specific events. Finally, this study suggested that in coastal oligotrophic areas, improvements in the description and quantification of the hydrodynamics and the terrestrial inputs should be preferred over increasing the complexity of the biogeochemical model. PMID:24324589

  8. Development of a 3D coupled physical-biogeochemical model for the Marseille coastal area (NW Mediterranean Sea): what complexity is required in the coastal zone?

    PubMed

    Fraysse, Marion; Pinazo, Christel; Faure, Vincent Martin; Fuchs, Rosalie; Lazzari, Paolo; Raimbault, Patrick; Pairaud, Ivane

    2013-01-01

    Terrestrial inputs (natural and anthropogenic) from rivers, the atmosphere and physical processes strongly impact the functioning of coastal pelagic ecosystems. The objective of this study was to develop a tool for the examination of these impacts on the Marseille coastal area, which experiences inputs from the Rhone River and high rates of atmospheric deposition. Therefore, a new 3D coupled physical/biogeochemical model was developed. Two versions of the biogeochemical model were tested, one model considering only the carbon (C) and nitrogen (N) cycles and a second model that also considers the phosphorus (P) cycle. Realistic simulations were performed for a period of 5 years (2007-2011). The model accuracy assessment showed that both versions of the model were able of capturing the seasonal changes and spatial characteristics of the ecosystem. The model also reproduced upwelling events and the intrusion of Rhone River water into the Bay of Marseille well. Those processes appeared to greatly impact this coastal oligotrophic area because they induced strong increases in chlorophyll-a concentrations in the surface layer. The model with the C, N and P cycles better reproduced the chlorophyll-a concentrations at the surface than did the model without the P cycle, especially for the Rhone River water. Nevertheless, the chlorophyll-a concentrations at depth were better represented by the model without the P cycle. Therefore, the complexity of the biogeochemical model introduced errors into the model results, but it also improved model results during specific events. Finally, this study suggested that in coastal oligotrophic areas, improvements in the description and quantification of the hydrodynamics and the terrestrial inputs should be preferred over increasing the complexity of the biogeochemical model. PMID:24324589

  9. Development of a 3D coupled physical-biogeochemical model for the Marseille coastal area (NW Mediterranean Sea): what complexity is required in the coastal zone?

    PubMed

    Fraysse, Marion; Pinazo, Christel; Faure, Vincent Martin; Fuchs, Rosalie; Lazzari, Paolo; Raimbault, Patrick; Pairaud, Ivane

    2013-01-01

    Terrestrial inputs (natural and anthropogenic) from rivers, the atmosphere and physical processes strongly impact the functioning of coastal pelagic ecosystems. The objective of this study was to develop a tool for the examination of these impacts on the Marseille coastal area, which experiences inputs from the Rhone River and high rates of atmospheric deposition. Therefore, a new 3D coupled physical/biogeochemical model was developed. Two versions of the biogeochemical model were tested, one model considering only the carbon (C) and nitrogen (N) cycles and a second model that also considers the phosphorus (P) cycle. Realistic simulations were performed for a period of 5 years (2007-2011). The model accuracy assessment showed that both versions of the model were able of capturing the seasonal changes and spatial characteristics of the ecosystem. The model also reproduced upwelling events and the intrusion of Rhone River water into the Bay of Marseille well. Those processes appeared to greatly impact this coastal oligotrophic area because they induced strong increases in chlorophyll-a concentrations in the surface layer. The model with the C, N and P cycles better reproduced the chlorophyll-a concentrations at the surface than did the model without the P cycle, especially for the Rhone River water. Nevertheless, the chlorophyll-a concentrations at depth were better represented by the model without the P cycle. Therefore, the complexity of the biogeochemical model introduced errors into the model results, but it also improved model results during specific events. Finally, this study suggested that in coastal oligotrophic areas, improvements in the description and quantification of the hydrodynamics and the terrestrial inputs should be preferred over increasing the complexity of the biogeochemical model.

  10. Nutrient limitation and physiology mediate the fine-scale (de)coupling of biogeochemical cycles.

    PubMed

    Appling, Alison P; Heffernan, James B

    2014-09-01

    Nutrients in the environment are coupled over broad timescales (days to seasons) when organisms add or withdraw multiple nutrients simultaneously and in ratios that are roughly constant. But at finer timescales (seconds to days), nutrients become decoupled if physiological traits such as nutrient storage limits, circadian rhythms, or enzyme kinetics cause one nutrient to be processed faster than another. To explore the interactions among these coupling and decoupling mechanisms, we introduce a model in which organisms process resources via uptake, excretion, growth, respiration, and mortality according to adjustable trait parameters. The model predicts that uptake can couple the input of one nutrient to the export of another in a ratio reflecting biological demand stoichiometry, but coupling occurs only when the input nutrient is limiting. Temporal nutrient coupling may, therefore, be a useful indicator of ecosystem limitation status. Fine-scale patterns of nutrient coupling are further modulated by, and potentially diagnostic of, physiological traits governing growth, uptake, and internal nutrient storage. Together, limitation status and physiological traits create a complex and informative relationship between nutrient inputs and exports. Understanding the mechanisms behind that relationship could enrich interpretations of fine-scale time-series data such as those now emerging from in situ solute sensors.

  11. Significant differences in biogeochemical processes between a glaciated and a permafrost dominated catchment

    NASA Astrophysics Data System (ADS)

    Hindshaw, Ruth; Heaton, Tim; Boyd, Eric; Lang, Susan; Tipper, Ed

    2014-05-01

    It is increasingly recognised that microbially mediated processes have a significant impact on chemical fluxes from glaciated catchments. One important reaction is the oxidation of pyrite since the production of sulphuric acid facilitates the dissolution of minerals without the need for acidity generated by dissolved atmospheric CO2. Thus weathering processes can still continue even when isolated from the atmosphere, as is thought to occur under large ice masses. However, as a glacier melts, it is expected that the microbial community will change with knock-on effects on the stream water chemistry. Understanding the difference in solute generation processes between glaciated and un-glaciated terrain is key to understanding how glacial-interglacial cycles affect atmospheric CO2 consumption by chemical weathering. In order to investigate whether biogeochemical processes differ between glaciated and un-glaciated terrain we collected stream water samples from two small catchments (each approximately 3 km2) in Svalbard. One catchment is glaciated and the other catchment is un-glaciated but is affected by permafrost and a seasonal snow-pack. The two catchments are situated next to each other with identical bedrock (shale with minor siltstone and sandstone). The proximity of the catchments to each other ensures that meteorological variables such as temperature and precipitation are very similar. Sampling was conducted early in the melt-season when there was still significant snow-cover and in mid-summer when most of the seasonal snow-pack had melted. The water samples were analysed for δ34S-SO4, δ18O-SO4, δ18O-H2O, δ13C-DIC and δ13C-DOC, together with major anions and cations. Despite the nominally identical lithology, there were significant differences in the stream water chemistry between the two catchments. For example, sulphate was the dominant anion in the un-glaciated catchment whereas bicarbonate was the dominant anion in the glaciated catchment. Pyrite

  12. Biogeochemical processes driving mercury cycling in estuarine ecosystems

    NASA Astrophysics Data System (ADS)

    Schartup, A. T.

    2015-12-01

    Mercury (Hg) is a naturally occurring element that has been enriched in the environment through human activities, particularly in the coastal zone. Bioaccumulation of methylmercury (MeHg) in marine fishposes health risks for fish-consuming populations and is a worldwide health concern. A broader understanding of major environmental processes controlling Hg cycling and MeHg production and bioaccumulation in estuaries is therefore needed. Recent fieldwork and modeling show diverse sources of MeHg production in estuaries. We present geochemical modeling results for Hg and MeHg acrossmultiple estuaries with contrasting physical, chemical and biological characteristics. We report new measurements of water column and sediment mercury speciation and methylation data from the subarctic (Lake Melville, Labrador Canada) and temperate latitudes (Long Island Sound, Delaware Bay, Chesapeake Bay). We find that benthic sediment is a relatively small source of MeHg to the water column in all systems. Water column methylation drives MeHg levels in Lake Melville, whereas in more impacted shallow systems such as Chesapeake Bay and Long Island Sound, external inputs and sediment resuspension are more dominant. All systems are a net source of MeHg to the ocean through tidal exchange. In light of these inter-system differences, we will evaluate timescales of coastal ecosystem responses to changes in Hg loading that can help predict potential responses to future perturbations.

  13. HYDROBIOGEOCHEM: A coupled model of HYDROlogic transport and mixed BIOGEOCHEMical kinetic/equilibrium reactions in saturated-unsaturated media

    SciTech Connect

    Yeh, G.T.; Salvage, K.M.; Gwo, J.P.; Zachara, J.M.; Szecsody, J.E.

    1998-07-01

    The computer program HYDROBIOGEOCHEM is a coupled model of HYDROlogic transport and BIOGEOCHEMical kinetic and/or equilibrium reactions in saturated/unsaturated media. HYDROBIOGEOCHEM iteratively solves the two-dimensional transport equations and the ordinary differential and algebraic equations of mixed biogeochemical reactions. The transport equations are solved for all aqueous chemical components and kinetically controlled aqueous species. HYDROBIOGEOCHEM is designed for generic application to reactive transport problems affected by both microbiological and geochemical reactions in subsurface media. Input to the program includes the geometry of the system, the spatial distribution of finite elements and nodes, the properties of the media, the potential chemical and microbial reactions, and the initial and boundary conditions. Output includes the spatial distribution of chemical and microbial concentrations as a function of time and space, and the chemical speciation at user-specified nodes.

  14. Isotopic Tracers for Biogeochemical Processes and Contaminant Transport: Hanford, Washington

    SciTech Connect

    Donald J. DePaolo; John N. Christensen; Mark E. Conrad; and P. Evan Dresel

    2007-04-19

    Our goal is to use isotopic measurements to understand how contaminants are introduced to and stored in the vadose zone, and what processes control migration from the vadose zone to groundwater and then to surface water. We have been using the Hanford Site in south-central Washington as our field laboratory, and our investigations are often stimulated by observations made as part of the groundwater monitoring program and vadose zone characterization activities. Understanding the transport of contaminants at Hanford is difficult due to the presence of multiple potential sources within small areas, the long history of activities, the range of disposal methods, and the continuing evolution of the hydrological system. Observations often do not conform to simple models, and cannot be adequately understood with standard characterization approaches, even though the characterization activities are quite extensive. One of our objectives is to test the value of adding isotopic techniques to the characterization program, which has the immediate potential benefit of addressing specific remediation issues, but more importantly, it allows us to study fundamental processes at the scale and in the medium where they need to be understood. Here we focus on two recent studies at the waste management area (WMA) T-TX-TY, which relate to the sources and transport histories of vadose zone and groundwater contamination and contaminant fluid-sediment interaction. The WMA-T and WMA-TX-TY tank farms are located within the 200 West Area in the central portion of the Hanford Site (Fig. 2). They present a complicated picture of mixed groundwater plumes of nitrate, {sup 99}Tc, Cr{sup 6+}, carbon tetrachloride, etc. and multiple potential vadose zone sources such as tank leaks and disposal cribs (Fig. 3). To access potential vadose zone sources, we analyzed samples from cores C3832 near tank TX-104 and from C4104 near tank T-106. Tank T-106 was involved in a major event in 1973 in which 435,000 L

  15. Evidence of biogeochemical processes in iron duricrust formation

    NASA Astrophysics Data System (ADS)

    Levett, Alan; Gagen, Emma; Shuster, Jeremiah; Rintoul, Llew; Tobin, Mark; Vongsvivut, Jitraporn; Bambery, Keith; Vasconcelos, Paulo; Southam, Gordon

    2016-11-01

    Canga is a moderately hard iron-rich duricrust primarily composed of goethite as a result of the weathering of banded iron formations. Canga duricrusts lack a well-developed soil profile and consequently form an innate association with rupestrian plants that may become ferruginised, contributing to canga possessing macroscopic biological features. Examination of polished canga using a field emission scanning electron microscope (FE-SEM) revealed the biological textures associated with canga extended to the sub-millimetre scale in petrographic sections and polished blocks. Laminae that formed by abiotic processes and regions where goethite cements were formed in association with microorganisms were observed in canga. Biological cycling of iron within canga has resulted in two distinct forms of microbial fossilisation: permineralisation of multispecies biofilms and mineralisation of cell envelopes. Goethite permineralised biofilms frequently formed around goethite-rich kaolinite grains in close proximity to goethite bands and were composed of micrometre-scale rod-shaped, cocci and filamentous microfossils. In contrast, the cell envelopes immobilised by authigenic iron oxides were primarily of rod-shaped microorganisms, were not permineralised and occurred in pore spaces within canga. Complete mineralisation of intact rod-shaped casts and the absence of permineralisation suggested mineralised cell envelopes may represent fossilised iron-oxidising bacteria in the canga ecosystem. Replication of these iron-oxidising bacteria appeared to infill the porous regions within canga. Synchrotron-based Fourier transform infrared (FTIR) microspectroscopy demonstrated that organic biomarkers were poorly preserved with only weak bands indicative of aliphatic methylene (CH2) associated with permineralised microbial biofilms. High resolution imaging of microbial fossils in canga that had been etched with oxalic acid supported the poor preservation of organic biomarkers within canga

  16. Biogeochemical Processes In Ethanol Stimulated Uranium Contaminated Subsurface Sediments

    SciTech Connect

    Mohanty, Santosh R.; Kollah, Bharati; Hedrick, David B.; Peacock, Aaron D.; Kukkadapu, Ravi K.; Roden, Eric E.

    2008-06-15

    A laboratory incubation experiment was conducted with uranium contaminated subsurface sediment to assess the geochemical and microbial community response to ethanol amendment. A classical sequence of TEAPs was observed in ethanol-amended slurries, with NO3- reduction, Fe(III) reduction, SO4 2- reduction, and CH4 production proceeding in sequence until all of the added 13C-ethanol (9 mM) was consumed. Approximately 60% of the U(VI) content of the sediment was reduced during the period of Fe(III) reduction. No additional U(VI) reduction took place during the sulfate-reducing and methanogenic phases of the experiment. Only gradual reduction of NO3 -, and no reduction of U(VI), took place in ethanol-free slurries. Stimulation of additional Fe(III) or SO4 2- reduction in the ethanol-amended slurries failed to promote further U(VI) reduction. Reverse transcribed 16S rRNA clone libraries revealed major increases in the abundance of organisms related to Dechloromonas, Geobacter, and Oxalobacter in the ethanolamended slurries. PLFAs indicative of Geobacter showed a distinct increase in the amended slurries, and analysis of PLFA 13C/12C ratios confirmed the incorporation of ethanol into these PLFAs. A increase in the abundance of 13C-labeled PLFAs indicative of Desulfobacter, Desulfotomaculum, and Desulfovibrio took place during the brief period of sulfate reduction which followed the Fe(III) reduction phase. Our results show that major redox processes in ethanol-amended sediments can be reliably interpreted in terms of standard conceptual models of TEAPs in sediments. However, the redox speciation of uranium is complex and cannot be explained based on simplified thermodynamic considerations.

  17. Geo- and biogeochemical processes in a heliothermal hypersaline lake

    NASA Astrophysics Data System (ADS)

    Zachara, John M.; Moran, James J.; Resch, Charles T.; Lindemann, Stephen R.; Felmy, Andrew R.; Bowden, Mark E.; Cory, Alexandra B.; Fredrickson, James K.

    2016-05-01

    precipitation in the mixolimnion and metalimnion, but the absence of calcareous sediments at depth suggests dissolution and recycling during winter months. Dissolved carbon concentrations [dissolved organic carbon (DOC) and dissolved inorganic carbon (DIC)] increased with depth, reaching ∼0.04 mol/L at the metalimnion-monimolimnion boundary. DIC concentrations were seasonally variable in the mixolimnion and metalimnion, and were influenced by calcium carbonate precipitation. DOC concentrations mimicked those of conservative salts (e.g., Na+-Cl-) in the mixolimnion and metalimnion, but decreased in the monimolimnion where mass loss by anaerobic microbial processes is implied. Biogenic reduced solutes originating in monimolimnion (H2S and CH4) were biologically oxidized in the metalimnion as they were not observed in more shallow lake waters. Multi-year solute inventory calculations indicated that Hot Lake is a stable, albeit seasonally and annually dynamic feature, with inorganic solutes cycled between lake waters and sediments depending on annual recharge, temperature, and lake water dilution state. With its extreme geochemical and thermal regime, Hot Lake functions as analog of early earth and extraterrestrial life environments.

  18. Southern Sierra Critical Zone Observatory: integrating water cycle and biogeochemical processes across the rain-snow transition

    NASA Astrophysics Data System (ADS)

    Bales, R.; Boyer, B.; Conklin, M.; Goulden, M.; Hopmans, J.; Hunsaker, C.; Johnson, D.; Kirchner, J.; Tague, C.

    2007-12-01

    The Southern Sierra Critical Zone Observatory (CZO) is establishing a rain-snow transition research platform for research by investigators from multiple disciplines and a research program aimed at yielding general knowledge and tools for understanding the interactions between water, atmosphere, ecosystems and landforms in the critical zone. A primary, overarching goal is to understand how critical zone processes control fluxes and stores of water across the landscape, and how the water cycle modulates (bio)geochemical, biological, geomorphological and soil processes in the critical zone. Five science questions define and focus the core measurement and research program: i) how do coupled hydrologic and biogeochemical fluxes vary across the rain-snow transition, ii) what is the role of extreme hydrologic events in water and biogeochemical balances, iii) to what extent does vegetation modulate or actively control the primary subsurface fluxes of water and nutrients, iv) over what time and space scales, and during what seasons, are short-circuit pathways dominant in the critical zone, and v) how does the presence of a seasonal snowpack affect the subsurface, critical zone, soils, geomorphology, biogeochemistry and hydrology, and how will the system respond as climate warms and snowpacks recede. Some unique features of the Sierra Nevada system as compared to more mesic sites include: i) hydrophobic soils, ii) islands of fertility in soils, iii) dominant role of catastrophic events, e.g. fire, and iv) spatial decoupling of decomposition from root uptake in soil profile. The rationale for measurement design, including the value of high-frequency data will be illustrated, as will the strategy for providing community data and information, and educational programs.

  19. Towards coupled physical-biogeochemical models of the ocean carbon cycle

    NASA Technical Reports Server (NTRS)

    Rintoul, Stephen R.

    1992-01-01

    The purpose of this review is to discuss the critical gaps in our knowledge of ocean dynamics and biogeochemical cycles. It is assumed that the ultimate goal is the design of a model of the earth system that can predict the response to changes in the external forces driving climate.

  20. Modeling greenhouse gas emissions and nutrient transport in managed arable soils with a fully coupled hydrology-biogeochemical modeling system

    NASA Astrophysics Data System (ADS)

    Haas, Edwin; Klatt, Steffen; Kiese, Ralf; Butterbach-Bahl, Klaus; Kraft, Philipp; Breuer, Lutz

    2015-04-01

    evapotranspiration is based on Penman-Monteith. Biogeochemical processes are modelled by LandscapeDNDC, including soil microclimate, plant growth and biomass allocation, organic matter mineralisation, nitrification, denitrification, chemodenitrification and methanogenesis producing and consuming soil based greenhouse gases. The model application will present first results of the coupled model to simulate soil based greenhouse gas emissions as well as nitrate discharge from the Yanting catchment. The model application will also present the effects of different management practices (fertilization rates and timings, tilling, residues management) on the redistribution of N surplus within the catchment causing biomass productivity gradients and different levels of indirect N2O emissions along topographical gradients.

  1. Cyclic biogeochemical processes and nitrogen fate beneath a subtropical stormwater infiltration basin

    USGS Publications Warehouse

    O'Reilly, Andrew M.; Chang, Ni-Bin; Wanielista, Martin P.

    2012-01-01

    A stormwater infiltration basin in north–central Florida, USA, was monitored from 2007 through 2008 to identify subsurface biogeochemical processes, with emphasis on N cycling, under the highly variable hydrologic conditions common in humid, subtropical climates. Cyclic variations in biogeochemical processes generally coincided with wet and dry hydrologic conditions. Oxidizing conditions in the subsurface persisted for about one month or less at the beginning of wet periods with dissolved O2 and NO3- showing similar temporal patterns. Reducing conditions in the subsurface evolved during prolonged flooding of the basin. At about the same time O2 and NO3- reduction concluded, Mn, Fe and SO42- reduction began, with the onset of methanogenesis one month later. Reducing conditions persisted up to six months, continuing into subsequent dry periods until the next major oxidizing infiltration event. Evidence of denitrification in shallow groundwater at the site is supported by median NO3-–N less than 0.016 mg L-1, excess N2 up to 3 mg L-1 progressively enriched in δ15N during prolonged basin flooding, and isotopically heavy δ15N and δ18O of NO3- (up to 25‰ and 15‰, respectively). Isotopic enrichment of newly infiltrated stormwater suggests denitrification was partially completed within two days. Soil and water chemistry data suggest that a biogeochemically active zone exists in the upper 1.4 m of soil, where organic carbon was the likely electron donor supplied by organic matter in soil solids or dissolved in infiltrating stormwater. The cyclic nature of reducing conditions effectively controlled the N cycle, switching N fate beneath the basin from NO3- leaching to reduction in the shallow saturated zone. Results can inform design of functionalized soil amendments that could replace the native soil in a stormwater infiltration basin and mitigate potential NO3- leaching to groundwater by replicating the biogeochemical conditions under the observed basin.

  2. Cyclic biogeochemical processes and nitrogen fate beneath a subtropical stormwater infiltration basin.

    PubMed

    O'Reilly, Andrew M; Chang, Ni-Bin; Wanielista, Martin P

    2012-05-15

    A stormwater infiltration basin in north-central Florida, USA, was monitored from 2007 through 2008 to identify subsurface biogeochemical processes, with emphasis on N cycling, under the highly variable hydrologic conditions common in humid, subtropical climates. Cyclic variations in biogeochemical processes generally coincided with wet and dry hydrologic conditions. Oxidizing conditions in the subsurface persisted for about one month or less at the beginning of wet periods with dissolved O(2) and NO(3)(-) showing similar temporal patterns. Reducing conditions in the subsurface evolved during prolonged flooding of the basin. At about the same time O(2) and NO(3)(-) reduction concluded, Mn, Fe and SO(4)(2-) reduction began, with the onset of methanogenesis one month later. Reducing conditions persisted up to six months, continuing into subsequent dry periods until the next major oxidizing infiltration event. Evidence of denitrification in shallow groundwater at the site is supported by median NO(3)(-)-N less than 0.016 mg L(-1), excess N(2) up to 3 mg L(-1) progressively enriched in δ(15)N during prolonged basin flooding, and isotopically heavy δ(15)N and δ(18)O of NO(3)(-) (up to 25‰ and 15‰, respectively). Isotopic enrichment of newly infiltrated stormwater suggests denitrification was partially completed within two days. Soil and water chemistry data suggest that a biogeochemically active zone exists in the upper 1.4m of soil, where organic carbon was the likely electron donor supplied by organic matter in soil solids or dissolved in infiltrating stormwater. The cyclic nature of reducing conditions effectively controlled the N cycle, switching N fate beneath the basin from NO(3)(-) leaching to reduction in the shallow saturated zone. Results can inform design of functionalized soil amendments that could replace the native soil in a stormwater infiltration basin and mitigate potential NO(3)(-) leaching to groundwater by replicating the biogeochemical

  3. Global Biogeochemical Cycle of Si: Its Coupling to the Perturbed C-N-P cycles in Industrial Time

    NASA Astrophysics Data System (ADS)

    Lerman, A.; Li, D. D.; MacKenzie, F. T.

    2010-12-01

    The importance of silicon (Si) in global biogeochemical cycles is demonstrated by its abundance in the land and aquatic biomass, where Si/C is 0.02 in land plants and 0.15 in marine organisms. Estimates show that Si-bioproduction accounts for ~1.5% of terrestrial primary production, and ~4.5% in the coastal ocean. Human land-use activities have substantially changed regional patterns of vegetation distribution, soil conditions, and nutrient fluxes via runoff to the coastal ocean. Anthropogenic chemical fertilization of the land has caused a significant increase in fluvial nitrogen (N) and phosphorus (P) transport, whereas land-use and vegetation mass changes have caused variations in the riverine Si input, all eventually affecting the cycling of nutrients in the marine environment. We developed a global biogeochemical model of the Si cycle as coupled to the global C-N-P cycle model, TOTEM II (Terrestrial-Ocean-aTmosphere-Ecosystem-Model). In the model analysis from year 1700, taken as the start of the Anthropocene, to 2050, the bioproduction of Si on land and in the ocean is coupled to the bioproduction of C, perturbed by the atmospheric CO2 rise, land-use changes, and chemical fertilization. Also, temperature rise affects the Si cycling on land through bioproduction rates, terrestrial organic matter remineralization, and weathering, thereby affecting its delivery to the coastal zone. The results show that biouptake and subsequent release of Si on land strongly affect the Si river flux to the coastal ocean. During the 350-year period, Si river discharge has increased by ~10% until ~1940, decreasing since then to below its 1700 value and continuing to drop, under the current IPCC IS92 projections of CO2, temperature and other forcings. From 1700 to ~1950, land-use changes, associated with slash and burn of large areas of high-productivity land, caused a decrease of global land vegetation. Dissolution of Si in soil humus and weathering of silicate minerals are the

  4. Characterization of eco-hydraulic habitats for examining biogeochemical processes in rivers

    NASA Astrophysics Data System (ADS)

    McPhillips, L. E.; O'Connor, B. L.; Harvey, J. W.

    2009-12-01

    Spatial variability in biogeochemical reaction rates in streams is often attributed to sediment characteristics such as particle size, organic material content, and biota attached to or embedded within the sediments. Also important in controlling biogeochemical reaction rates are hydraulic conditions, which influence mass transfer of reactants from the stream to the bed, as well as hyporheic exchange within near-surface sediments. This combination of physical and ecological variables has the potential to create habitats that are unique not only in sediment texture but also in their biogeochemical processes and metabolism rates. In this study, we examine the two-dimensional (2D) variability of these habitats in an agricultural river in central Iowa. The streambed substratum was assessed using a grid-based survey identifying dominant particle size classes, as well as aerial coverage of green algae, benthic organic material, and coarse woody debris. Hydraulic conditions were quantified using a calibrated 2D model, and hyporheic exchange was assessed using a scaling relationship based on sediment and hydraulic characteristics. Point-metabolism rates were inferred from measured sediment dissolved oxygen profiles using an effective diffusion model and compared to traditional whole-stream measurements of metabolism. The 185 m study reach had contrasting geomorphologic and hydraulic characteristics in the upstream and downstream portions of an otherwise relatively straight run of a meandering river. The upstream portion contained a large central gravel bar (50 m in length) flanked by riffle-run segments and the downstream portion contained a deeper, fairly uniform channel cross-section. While relatively high flow velocities and gravel sediments were characteristic of the study river, the upstream island bar separated channels that differed with sandy gravels on one side and cobbley gravels on the other. Additionally, green algae was almost exclusively found in riffle

  5. EFFECT OF NUTRIENT LOADING ON BIOGEOCHEMICAL AND MICROBIAL PROCESSES IN A NEW ENGLAND HIGH SALT MARSH, SPARTINA PATNES, (AITON MUHL)

    EPA Science Inventory

    Coastal marshes represent an important transitional zone between uplands and estuaries and can assimilate nutrient inputs from uplands. We examined the effects of nitrogen (N) and phosphorus (P) fertilization on biogeochemical and microbial processes during the summer growing sea...

  6. Comparing soil biogeochemical processes in novel and natural boreal forest ecosystems

    NASA Astrophysics Data System (ADS)

    Quideau, S. A.; Swallow, M. J. B.; Prescott, C. E.; Grayston, S. J.; Oh, S.-W.

    2013-04-01

    Emulating the variability that exists in the natural landscape prior to disturbance should be a goal of soil reconstruction and land reclamation efforts following resource extraction. Long-term ecosystem sustainability within reclaimed landscapes can only be achieved with the re-establishment of biogeochemical processes between reconstructed soils and plants. In this study, we assessed key soil biogeochemical attributes (nutrient availability, organic matter composition, and microbial communities) in reconstructed, novel, anthropogenic ecosystems covering different reclamation treatments following open-cast mining for oil extraction. We compared the attributes to those present in a range of natural soils representative of mature boreal forest ecosystems in the same area of northern Alberta. Soil nutrient availability was determined in situ with resin probes, organic matter composition was described with 13C nuclear magnetic resonance spectroscopy and soil microbial community structure was characterized using phospholipid fatty acid analysis. Significant differences among natural ecosystems were apparent in nutrient availability and seemed more related to the dominant tree cover than to soil type. When analyzed together, all natural forests differed significantly from the novel ecosystems, in particular with respect to soil organic matter composition. However, there was some overlap between the reconstructed soils and some of the natural ecosystems in nutrient availability and microbial communities, but not in organic matter characteristics. Hence, our results illustrate the importance of considering the range of natural landscape variability, and including several soil biogeochemical attributes when comparing novel, anthropogenic ecosystems to the mature ecosystems that constitute ecological targets.

  7. Comparing soil biogeochemical processes in novel and natural boreal forest ecosystems

    NASA Astrophysics Data System (ADS)

    Quideau, S. A.; Swallow, M. J. B.; Prescott, C. E.; Grayston, S. J.; Oh, S.-W.

    2013-08-01

    Emulating the variability that exists in the natural landscape prior to disturbance should be a goal of soil reconstruction and land reclamation efforts following resource extraction. Long-term ecosystem sustainability within reclaimed landscapes can only be achieved with the re-establishment of biogeochemical processes between reconstructed soils and plants. In this study, we assessed key soil biogeochemical attributes (nutrient availability, organic matter composition, and microbial communities) in reconstructed, novel, anthropogenic ecosystems, covering different reclamation treatments following open-cast mining for oil extraction. We compared the attributes to those present in a range of natural soils representative of mature boreal forest ecosystems in the same area of Northern Alberta. Soil nutrient availability was determined in situ with resin probes, organic matter composition was described with 13C nuclear magnetic resonance spectroscopy and soil microbial community structure was characterized using phospholipid fatty acid analysis. Significant differences among natural ecosystems were apparent in nutrient availability and seemed more related to the dominant tree cover than to soil type. When analyzed together, all natural forests differed significantly from the novel ecosystems, in particular with respect to soil organic matter composition. However, there was some overlap between the reconstructed soils and some of the natural ecosystems in nutrient availability and microbial communities, but not in organic matter characteristics. Hence, our results illustrate the importance of considering the range of natural landscape variability and including several soil biogeochemical attributes when comparing novel, anthropogenic ecosystems to the mature ecosystems that constitute ecological targets.

  8. Biogeochemical processes on tree islands in the greater everglades: Initiating a new paradigm

    USGS Publications Warehouse

    Wetzel, P.R.; Sklar, Fred H.; Coronado, C.A.; Troxler, T.G.; Krupa, S.L.; Sullivan, P.L.; Ewe, S.; Price, R.M.; Newman, S.; Orem, W.H.

    2011-01-01

    Scientists' understanding of the role of tree islands in the Everglades has evolved from a plant community of minor biogeochemical importance to a plant community recognized as the driving force for localized phosphorus accumulation within the landscape. Results from this review suggest that tree transpiration, nutrient infiltration from the soil surface, and groundwater flow create a soil zone of confluence where nutrients and salts accumulate under the head of a tree island during dry periods. Results also suggest accumulated salts and nutrients are flushed downstream by regional water flows during wet periods. That trees modulate their environment to create biogeochemical hot spots and strong nutrient gradients is a significant ecological paradigm shift in the understanding of the biogeochemical processes in the Everglades. In terms of island sustainability, this new paradigm suggests the need for distinct dry-wet cycles as well as a hydrologic regime that supports tree survival. Restoration of historic tree islands needs further investigation but the creation of functional tree islands is promising. Copyright ?? 2011 Taylor & Francis Group, LLC.

  9. Coupled biogeochemical cycles in riparian zones with contrasting hydrogeomorphic characteristics in the US Midwest

    NASA Astrophysics Data System (ADS)

    Liu, X.

    2012-12-01

    In this study we aims to understand what drives the fate and transport of multiple contaminants sensitive to soil redox condition across hydrogeomorphic (HGM) gradient and evaluate overall biogeochemical functions of riparian zones regarding those contaminants. We conducted monthly field work for 19 consecutive months from November 2009 to May 2011 at three study sites representative for main HGM types at the US Midwest. We collected the parameters from different sources which include field parameters, such as topography, water table depth, oxidation reduction potential (ORP) and dissolved oxygen (DO), and groundwater chemistry, such as NH4+, NO3-, PO43-, SO42-, CI- , and Hg and MeHg. Our results demonstrated that seasonal water table fluctuations and groundwater flows characteristics at three sites are strongly affected by their HGM setting. Specifically, the convergence of quick rise of water table, high ORP and sharp decrease in concentrations of NO3- and SO42 from field edge to stream edge (60-90% at LWD and 90% at WR) in spring after snowmelt and early May, which could be explained by that snow melt and early summer rainfall are major drivers of fluctuations of water table, variations of ORP and transport and transformation of contaminants. Riparian zones removed NO3- and SO42- during high water table but released Mercury in summer at both LWD and WR, and sulfate reduction, ammonia production and MeHg production all occurred when ORP and water tables were low in summer. These results might reflect the strong ORP control on these processes at landscape scale. These findings supported our hypothesis. Other findings however contrast to our hypothesis. For instances, unusual high concentrations of nitrate and Hg at WR suggest that the transport and fate of multiple contaminants relate not only to HGM settings but geographic location and land use. Negligible variations of P concentration in groundwater indicate that the transformation of P is not sensitive to soil

  10. Coupled Hydrological and Biogeochemical Controls on Methylmercury Production and Export from a Boreal Wetland

    NASA Astrophysics Data System (ADS)

    Heyes, A.; Krabbenhoft, D. P.; Branfireun, B. A.; Gilmour, C. C.; Mitchell, C. P.; Tate, M. T.; Richardson, M.

    2007-12-01

    Through long-term addition of a mercury (Hg) stable isotope to a wetland, we have begun to unravel the complexity of Hg and methylmercury (MeHg) cycling in a Boreal wetland. As part of the METAALICUS project being conducted at the Experimental Lakes Area, the lake 658 wetland was annually amended from 2001-2006 with a mercury isotope at a level approximately 5 times the annual anthropogenic deposition. However, wetlands not only receive Hg directly from atmospheric deposition, but also from upland runoff and from adjacent water bodies during periods of inundation. As METAALICUS is a whole watershed experiment, both the adjacent lake and uplands were each amended with a different mercury isotope. This has allowed us to study the cycling of Hg within the wetland in a watershed context. What is clear from this integrated approach is Hg cycling is dependent on the complex interplay of hydrodynamic and biogeochemical factors which will form the focus of this presentation. The Lake 658 wetland is classified as a basin oligotrophic swamp, and is surrounded on three sides by steeply sloping uplands and on the fourth by a lake. The morphology of the wetland causes large portions of the wetland to be hydrologically disconnected for long periods during dry periods in the summer and by ice in winter. When flow occurs, it is along defined channels rather than by sheet flow, which is partially an artifact of the basin morphology. Thus, wetland form influences the wetland volume that contributes to Hg and MeHg export. The majority of the Hg isotope added to the wetland has been retained in the vegetation and upper few centimeters of peat, with less than 1% exported despite the substantial export of both inorganic ambient Hg and MeHg. As little newly deposited Hg, represented by the amended isotope has been exported, we hypothesize that Hg export from wetlands is strongly coupled to decomposition and the fate of dissolved organic carbon which binds both Hg and MeHg. While MeHg is

  11. Study of the Tagus estuarine plume using coupled hydro and biogeochemical models

    NASA Astrophysics Data System (ADS)

    Vaz, Nuno; Leitão, Paulo C.; Juliano, Manuela; Mateus, Marcos; Dias, João. Miguel; Neves, Ramiro

    2010-05-01

    Plumes of buoyant water produced by inflow from rivers and estuaries are common on the continental shelf. Buoyancy associated with estuarine waters is a key mediating factor in the transport and transformation of dissolved and particulate materials in coastal margins. The offshore displacement of the plume is influenced greatly by the local alongshore wind, which will tend to advect the plume either offshore or onshore, consistently with the Ekman transport. Other factor affecting the propagation of an estuarine plume is the freshwater inflow on the landward boundary. In this paper, a coupled three-dimensional ocean circulation and biogeochemical model with realistic high and low frequency forcing is used to get insight on how the Tagus River plume responds to wind and freshwater discharge during winter and spring. A nesting approach based on the MOHID numerical system was implemented for the Tagus estuary near shelf. Realistic hindcast simulations were performed, covering a period from January to June 2007. Model results were evaluated using in-situ and satellite imagery data. The numerical model was implemented using a three level nesting model. The model domain includes the whole Portuguese coast, the Tagus estuary near shelf and the Tagus River estuary, using a realistic coastline and bottom topography. River discharge and wind forcing are considered as landward and surface boundary conditions, respectively. Initial ocean stratification is from the MERCATOR solution. Ambient shelf conditions include tidal motion. As a prior validation, models outputs of salinity and water temperature were compared to available data (January 30th and May 30th, 2007) and were found minor differences between model outputs and data. On January 30th, outside the estuary, the model results reveal a stratified water column, presenting salinity stratification of the order of 3-4. The model also reproduces the hydrography for the May 30th observations. In May, near the Tagus mouth

  12. Tracing biogeochemical processes in stream water and groundwater using non-linear statistics

    NASA Astrophysics Data System (ADS)

    Lischeid, Gunnar; Bittersohl, Jochen

    2008-07-01

    SummaryStream water and groundwater solute concentration are subject to a multitude of biogeochemical processes that act at different scales and are often characterized by non-linear relationships and feedback loops. Different multivariate statistical methods were applied to investigate the interplay of different processes. The data set from the Lehstenbach catchment in South Germany comprised 2641 stream water and groundwater samples from 38 different sites in the catchment, where 13 different solutes had been determined. According to the correlation dimension analysis, the number of dominant processes was four. The first four components determined via principal component analysis comprised 88% of the total variance, whereas the non-linear isometric feature mapping explained 92% with the first four components. These components were ascribed to prevailing biogeochemical processes and were used to investigate spatial and temporal patterns. Redox processes and contamination by road salt explained 35% of the variance each. Another 13% were ascribed to near-surface runoff in the acidified topsoil, and 9% to the impact of contaminated filter gravel in some of the groundwater wells. The redox component exhibited clear seasonal patterns at most stream water and groundwater sampling sites, with the most reduced conditions in late summer, immediately before the onset of re-wetting. There was clear evidence that redox processes, especially denitrification, play an important role even in the oxic aquifer. During discharge peaks, stream water exhibited higher values of the near-surface runoff component. However, the associated lower values of the redox component pointed to near-surface runoff in the riparian wetlands as the predominating runoff generation process rather than to a contribution of upslope soil water. A series of major rain storms in fall 1998 altered groundwater and stream water solute concentration for months: stream water and groundwater became more oxic and

  13. Trees actively and directly influence biogeochemical processes in boreal forested watersheds

    NASA Astrophysics Data System (ADS)

    Högberg, Peter

    2010-05-01

    Trees actively and directly influence biogeochemical processes in boreal forested watersheds Peter Högberg, Dept. of Forest Ecology and Management, SLU, SE-901 83 Umeå, Sweden It is increasingly realized that trees are directly influencing soil processes, and thereby significantly also biogeochemical processes at the scale of watersheds. For example, it is now well established that recent photosynthesis supports on average around 50% of the soil respiratory activity. It takes only a few days from tree canopy photosynthesis to the use of that C by plant roots and soil microbes. Importantly, not only does this represent a significant and rapid return flux of CO2 back to the atmosphere, but it also relates to a range of important biogeochemical processes. These occur not only in the soil, but also in streams and lakes, e.g., in nutrient-poor boreal forests areas labile C compounds produced by tree roots and their associated microorganisms constitute an important C source for lake biota. Furthermore, the tree belowground C allocation is under strong physiological control and responds to the supply of nutrients, especially to the supply of nitrogen. When this is low, as in most boreal forests, the belowground C allocation to roots and mycorrhizal fungi is large. This explains the very large N retention capacity of these forests. However, after large additions of N, this belowground C flux is reduced and consequently also the N retention capacity of mycorrhizal fungi. When this occurs, bacteria, organisms with a much lower C/N ratio, become dominant; but as these are C-limited, their capacity to sequester N is much lower than that of fungi. As a consequence, the N cycle opens up, and N is lost through leaching of nitrate and denitrification. However, if the N-load is removed, the trees start to allocate more C belowground to their mycorrhizal fungi again, and this important N-trap is restored. Thus, there are many examples of how trees actively and directly (with short

  14. Technical note: Sampling and processing of mesocosm sediment trap material for quantitative biogeochemical analysis

    NASA Astrophysics Data System (ADS)

    Boxhammer, Tim; Bach, Lennart T.; Czerny, Jan; Riebesell, Ulf

    2016-05-01

    Sediment traps are the most common tool to investigate vertical particle flux in the marine realm. However, the spatial and temporal decoupling between particle formation in the surface ocean and particle collection in sediment traps at depth often handicaps reconciliation of production and sedimentation even within the euphotic zone. Pelagic mesocosms are restricted to the surface ocean, but have the advantage of being closed systems and are therefore ideally suited to studying how processes in natural plankton communities influence particle formation and settling in the ocean's surface. We therefore developed a protocol for efficient sample recovery and processing of quantitatively collected pelagic mesocosm sediment trap samples for biogeochemical analysis. Sedimented material was recovered by pumping it under gentle vacuum through a silicon tube to the sea surface. The particulate matter of these samples was subsequently separated from bulk seawater by passive settling, centrifugation or flocculation with ferric chloride, and we discuss the advantages and efficiencies of each approach. After concentration, samples were freeze-dried and ground with an easy to adapt procedure using standard lab equipment. Grain size of the finely ground samples ranged from fine to coarse silt (2-63 µm), which guarantees homogeneity for representative subsampling, a widespread problem in sediment trap research. Subsamples of the ground material were perfectly suitable for a variety of biogeochemical measurements, and even at very low particle fluxes we were able to get a detailed insight into various parameters characterizing the sinking particles. The methods and recommendations described here are a key improvement for sediment trap applications in mesocosms, as they facilitate the processing of large amounts of samples and allow for high-quality biogeochemical flux data.

  15. MODELING COUPLED HYDROLOGICAL AND CHEMICAL PROCESSES: LONG-TERM URANIUM TRANSPORT FOLLOWING PHOSPHOROUS-FERTILIZATION

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Contaminants in the vadose zone are affected by the physical processes of water flow, heat movement and multicomponent transport, as well as generally by a range of interacting biogeochemical processes. Coupling these various processes within one integrated numerical simulator provides a process-ba...

  16. Technical Note: Sampling and processing of mesocosm sediment trap material for quantitative biogeochemical analysis

    NASA Astrophysics Data System (ADS)

    Boxhammer, T.; Bach, L. T.; Czerny, J.; Riebesell, U.

    2015-11-01

    Sediment traps are the most common tool to investigate vertical particle flux in the marine realm. However, the spatial decoupling between particle formation and collection often handicaps reconciliation of these two processes even within the euphotic zone. Pelagic mesocosms have the advantage of being closed systems and are therefore ideally suited to study how processes in natural plankton communities influence particle formation and settling in the ocean's surface. We therefore developed a protocol for efficient sample recovery and processing of quantitatively collected pelagic mesocosm sediment trap samples. Sedimented material was recovered by pumping it under gentle vacuum through a silicon tube to the sea surface. The particulate matter of these samples was subsequently concentrated by passive settling, centrifugation or flocculation with ferric chloride and we discuss the advantages of each approach. After concentration, samples were freeze-dried and ground with an easy to adapt procedure using standard lab equipment. Grain size of the finely ground samples ranges from fine to coarse silt (2-63 μm), which guarantees homogeneity for representative subsampling, a widespread problem in sediment trap research. Subsamples of the ground material were perfectly suitable for a variety of biogeochemical measurements and even at very low particle fluxes we were able to get a detailed insight on various parameters characterizing the sinking particles. The methods and recommendations described here are a key improvement for sediment trap applications in mesocosms, as they facilitate processing of large amounts of samples and allow for high-quality biogeochemical flux data.

  17. Biogeochemical Considerations

    NASA Technical Reports Server (NTRS)

    Delwiche, C. C.

    1984-01-01

    Some questions relating to biogeochemical cycles and the nature of the biosphere driving them is best approached by means of remote (satellite) monitoring. Important among these are the distribution of various ecosystems and the boundaries between them, the extent and rate of modification of ecosystems by human or other factors, and various climatic and physical factors affecting ecosystem performance as influenced by human or natural processes.

  18. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

    PubMed Central

    Ho, Adrian; Angel, Roey; Veraart, Annelies J.; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L. E.

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes.

  19. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

    PubMed Central

    Ho, Adrian; Angel, Roey; Veraart, Annelies J.; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L. E.

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes. PMID:27602021

  20. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System.

    PubMed

    Ho, Adrian; Angel, Roey; Veraart, Annelies J; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L E

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes. PMID:27602021

  1. Spatio-temporal evolution of biogeochemical processes at a landfill site

    NASA Astrophysics Data System (ADS)

    Arora, B.; Mohanty, B. P.; McGuire, J. T.

    2011-12-01

    Predictions of fate and transport of contaminants are strongly dependent on spatio-temporal variability of soil hydraulic and geochemical properties. This study focuses on time-series signatures of hydrological and geochemical properties at different locations within the Norman landfill site. Norman Landfill is a closed municipal landfill site with prevalent organic contamination. Monthly data at the site include specific conductance, δ18O, δ2H, dissolved organic carbon (DOC) and anions (chloride, sulfate, nitrate) from 1998-2006. Column scale data on chemical concentrations, redox gradients, and flow parameters are also available on daily and hydrological event (infiltration, drainage, etc.) scales. Since high-resolution datasets of contaminant concentrations are usually unavailable, Wavelet and Fourier analyses were used to infer the dominance of different biogeochemical processes at different spatio-temporal scales and to extract linkages between transport and reaction processes. Results indicate that time variability controls the progression of reactions affecting biodegradation of contaminants. Wavelet analysis suggests that iron-sulfide reduction reactions had high seasonal variability at the site, while fermentation processes dominated at the annual time scale. Findings also suggest the dominance of small spatial features such as layered interfaces and clay lenses in driving biogeochemical reactions at both column and landfill scales. A conceptual model that caters to increased understanding and remediating structurally heterogeneous variably-saturated media is developed from the study.

  2. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System.

    PubMed

    Ho, Adrian; Angel, Roey; Veraart, Annelies J; Daebeler, Anne; Jia, Zhongjun; Kim, Sang Yoon; Kerckhof, Frederiek-Maarten; Boon, Nico; Bodelier, Paul L E

    2016-01-01

    Microbial interaction is an integral component of microbial ecology studies, yet the role, extent, and relevance of microbial interaction in community functioning remains unclear, particularly in the context of global biogeochemical cycles. While many studies have shed light on the physico-chemical cues affecting specific processes, (micro)biotic controls and interactions potentially steering microbial communities leading to altered functioning are less known. Yet, recent accumulating evidence suggests that the concerted actions of a community can be significantly different from the combined effects of individual microorganisms, giving rise to emergent properties. Here, we exemplify the importance of microbial interaction for ecosystem processes by analysis of a reasonably well-understood microbial guild, namely, aerobic methane-oxidizing bacteria (MOB). We reviewed the literature which provided compelling evidence for the relevance of microbial interaction in modulating methane oxidation. Support for microbial associations within methane-fed communities is sought by a re-analysis of literature data derived from stable isotope probing studies of various complex environmental settings. Putative positive interactions between active MOB and other microbes were assessed by a correlation network-based analysis with datasets covering diverse environments where closely interacting members of a consortium can potentially alter the methane oxidation activity. Although, methanotrophy is used as a model system, the fundamentals of our postulations may be applicable to other microbial guilds mediating other biogeochemical processes.

  3. Hybrid Multiscale Simulation of Hydrologic and Biogeochemical Processes in the River-Groundwater Interaction Zone

    NASA Astrophysics Data System (ADS)

    Yang, X.; Scheibe, T. D.; Chen, X.; Hammond, G. E.; Song, X.

    2015-12-01

    The zone in which river water and groundwater mix plays an important role in natural ecosystems as it regulates the mixing of nutrients that control biogeochemical transformations. Subsurface heterogeneity leads to local hotspots of microbial activity that are important to system function yet difficult to resolve computationally. To address this challenge, we are testing a hybrid multiscale approach that couples models at two distinct scales, based on field research at the U. S. Department of Energy's Hanford Site. The region of interest is a 400 x 400 x 20 m macroscale domain that intersects the aquifer and the river and contains a contaminant plume. However, biogeochemical activity is high in a thin zone (mud layer, <1 m thick) immediately adjacent to the river. This microscale domain is highly heterogeneous and requires fine spatial resolution to adequately represent the effects of local mixing on reactions. It is not computationally feasible to resolve the full macroscale domain at the fine resolution needed in the mud layer, and the reaction network needed in the mud layer is much more complex than that needed in the rest of the macroscale domain. Hence, a hybrid multiscale approach is used to efficiently and accurately predict flow and reactive transport at both scales. In our simulations, models at both scales are simulated using the PFLOTRAN code. Multiple microscale simulations in dynamically defined sub-domains (fine resolution, complex reaction network) are executed and coupled with a macroscale simulation over the entire domain (coarse resolution, simpler reaction network). The objectives of the research include: 1) comparing accuracy and computing cost of the hybrid multiscale simulation with a single-scale simulation; 2) identifying hot spots of microbial activity; and 3) defining macroscopic quantities such as fluxes, residence times and effective reaction rates.

  4. Can spectroscopic analysis improve our understanding of biogeochemical processes in agricultural streams?

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Heathwaite, Ann Louise

    2015-04-01

    In agricultural catchments diffuse fluxes of nutrients, mainly nitrogen (N) and phosphorus (P) from arable land and livestock are responsible for pollution of receiving waters and their eutrophication. Organic matter (OM) can play an important role in mediating a range of biogeochemical processes controlling diffuse pollution in streams and at their interface with surrounding land in the riparian and hyporheic zones. Thus, a holistic and simultaneous monitoring of N, P and OM fractions can help to improve our understanding of biogeochemical functioning of agricultural streams. In this study we build on intensive in situ monitoring of diffuse pollution in a small agricultural groundwater-fed stream in NW England carried out since 2009. The in situ monitoring unit captures high-frequency (15 minutes to hourly) responses of water quality parameters including total phosphorus, total reactive phosphorus and nitrate-nitrogen to changing flow conditions. For two consecutive hydrological years we have carried out additional spectroscopic water analyses to characterise organic matter components and their interactions with nutrient fractions. Automated and grab water samples have been analysed using ultraviolet-visible (UV-Vis) absorbance and excitation-emission (EEM) fluorescence spectroscopy. In addition, a tryptophan sensor was trialled to capture in situ fluorescence dynamics. Our paper evaluates patterns in nutrient and OM responses to baseflow and storm flow conditions and provides an assessment of storage-related changes of automated samples and temperature and turbidity effects on in situ tryptophan measurements. The paper shows the value of spectroscopic measurements to understand biogeochemical and hydrological nutrient dynamics and quantifies analytical uncertainty associated with both laboratory-based and in situ spectroscopic measurements.

  5. Significant Findings: Seasonal Distributions of Global Ocean Chlorophyll and Nutrients With a Coupled Ocean General Circulation, Biogeochemical, and Radiative Model. 2; Comparisons With Satellite and In Situ Data

    NASA Technical Reports Server (NTRS)

    Gregg, Watson W.; Busalacchi, Antonio (Technical Monitor)

    2000-01-01

    A coupled ocean general circulation, biogeochemical, and radiative model was constructed to evaluate and understand the nature of seasonal variability of chlorophyll and nutrients in the global oceans. Biogeochemical processes in the model were determined from the influences of circulation and turbulence dynamics, irradiance availability, and the interactions among three functional phytoplankton groups (diatoms, chlorophytes, and picoplankton) and three nutrients (nitrate, ammonium, and silicate). Basin scale (>1000 km) model chlorophyll seasonal distributions were statistically positively correlated with CZCS chlorophyll in 10 of 12 major oceanographic regions, and with SeaWiFS in all 12. Notable disparities in magnitudes occurred, however, in the tropical Pacific, the spring/summer bloom in the Antarctic, autumn in the northern high latitudes, and during the southwest monsoon in the North Indian Ocean. Synoptic scale (100-1000 km) comparisons of satellite and in situ data exhibited broad agreement, although occasional departures were apparent. Model nitrate distributions agreed with in situ data, including seasonal dynamics, except for the equatorial Atlantic. The overall agreement of the model with satellite and in situ data sources indicated that the model dynamics offer a reasonably realistic simulation of phytoplankton and nutrient dynamics on basin and synoptic scales.

  6. Tracing biogeochemical and microbial variability over a complete oil sand mining and recultivation process.

    PubMed

    Noah, Mareike; Lappé, Michael; Schneider, Beate; Vieth-Hillebrand, Andrea; Wilkes, Heinz; Kallmeyer, Jens

    2014-11-15

    Recultivation of disturbed oil sand mining areas is an issue of increasing importance. Nevertheless only little is known about the fate of organic matter, cell abundances and microbial community structures during oil sand processing, tailings management and initial soil development on reclamation sites. Thus the focus of this work is on biogeochemical changes of mined oil sands through the entire process chain until its use as substratum for newly developing soils on reclamation sites. Therefore, oil sand, mature fine tailings (MFTs) from tailings ponds and drying cells and tailings sand covered with peat-mineral mix (PMM) as part of land reclamation were analyzed. The sample set was selected to address the question whether changes in the above-mentioned biogeochemical parameters can be related to oil sand processing or biological processes and how these changes influence microbial activities and soil development. GC-MS analyses of oil-derived biomarkers reveal that these compounds remain unaffected by oil sand processing and biological activity. In contrast, changes in polycyclic aromatic hydrocarbon (PAH) abundance and pattern can be observed along the process chain. Especially naphthalenes, phenanthrenes and chrysenes are altered or absent on reclamation sites. Furthermore, root-bearing horizons on reclamation sites exhibit cell abundances at least ten times higher (10(8) to 10(9) cells g(-1)) than in oil sand and MFT samples (10(7) cells g(-1)) and show a higher diversity in their microbial community structure. Nitrate in the pore water and roots derived from the PMM seem to be the most important stimulants for microbial growth. The combined data show that the observed compositional changes are mostly related to biological activity and the addition of exogenous organic components (PMM), whereas oil extraction, tailings dewatering and compaction do not have significant influences on the evaluated compounds. Microbial community composition remains relatively

  7. Tracing biogeochemical and microbial variability over a complete oil sand mining and recultivation process.

    PubMed

    Noah, Mareike; Lappé, Michael; Schneider, Beate; Vieth-Hillebrand, Andrea; Wilkes, Heinz; Kallmeyer, Jens

    2014-11-15

    Recultivation of disturbed oil sand mining areas is an issue of increasing importance. Nevertheless only little is known about the fate of organic matter, cell abundances and microbial community structures during oil sand processing, tailings management and initial soil development on reclamation sites. Thus the focus of this work is on biogeochemical changes of mined oil sands through the entire process chain until its use as substratum for newly developing soils on reclamation sites. Therefore, oil sand, mature fine tailings (MFTs) from tailings ponds and drying cells and tailings sand covered with peat-mineral mix (PMM) as part of land reclamation were analyzed. The sample set was selected to address the question whether changes in the above-mentioned biogeochemical parameters can be related to oil sand processing or biological processes and how these changes influence microbial activities and soil development. GC-MS analyses of oil-derived biomarkers reveal that these compounds remain unaffected by oil sand processing and biological activity. In contrast, changes in polycyclic aromatic hydrocarbon (PAH) abundance and pattern can be observed along the process chain. Especially naphthalenes, phenanthrenes and chrysenes are altered or absent on reclamation sites. Furthermore, root-bearing horizons on reclamation sites exhibit cell abundances at least ten times higher (10(8) to 10(9) cells g(-1)) than in oil sand and MFT samples (10(7) cells g(-1)) and show a higher diversity in their microbial community structure. Nitrate in the pore water and roots derived from the PMM seem to be the most important stimulants for microbial growth. The combined data show that the observed compositional changes are mostly related to biological activity and the addition of exogenous organic components (PMM), whereas oil extraction, tailings dewatering and compaction do not have significant influences on the evaluated compounds. Microbial community composition remains relatively

  8. Plant impact on the biogeochemical cycle of silicon and related weathering processes

    NASA Astrophysics Data System (ADS)

    Alexandre, Anne; Meunier, Jean-Dominique; Colin, Fabrice; Koud, Jean-Mathias

    1997-02-01

    The contribution of plants to the biogeochemical cycle of Si and related weathering processes was studied in an equatorial rainforest ecosystem (Congo) where the biologic turnover of Si is high (58 to 76 kg/ha/y). Litterfall leaves, a soil profile and groundwaters were analysed. Phytoliths and organic matter have a similar distribution with depth in the soil profile. The model of a bicompartmental distribution of organic matter is applied to phytolith distribution and shows that about 92% of the biogenic silica input is rapidly recycled while about 8% of the biogenic silica input supplies a stable pool of phytoliths, with a lower turnover. Reprecipitation of silica was observed at the base of the soil profile, indicating a local geochemical environment that is oversaturated with respect to amorphous silica. A balance in biogeochemical cycle of Si requires that the vegetation absorb dissolved silicon released from weathering of minerals, which otherwise would be available for mineral neoformation or export from the profile towards regional drainages. Plant uptake of Si increases the chemical weathering rate without increasing the denudation rate. This study shows that the uptake, storage, and release of Si by the vegetation have to be taken into account when using dissolved Si for tracing chemical weathering dynamics.

  9. Quantifying the surface-subsurface biogeochemical coupling during the VERTIGO ALOHA and K2 studies

    SciTech Connect

    Boyd, P.W.; Gall, M.P.; Silver, M.W.; Bishop, J.K.B.; Coale, Susan L.; Bidigare, Robert R.

    2008-02-25

    A central question addressed by the VERTIGO (VERtical Transport In the Global Ocean) study was 'What controls the efficiency of particle export between the surface and subsurface ocean'? Here, we present data from sites at ALOHA (N Central Pacific Gyre) and K2 (NW subarctic Pacific) on phytoplankton processes, and relate them via a simple planktonic foodweb model, to subsurface particle export (150-500 m). Three key factors enable quantification of the surface-subsurface coupling: a sampling design to overcome the temporal lag and spatial displacement between surface and subsurface processes; data on the size-partitioning of Net Primary Production (NPP) and subsequent transformations prior to export; estimates of the ratio of algal- to faecal-mediated vertical export flux. At ALOHA, phytoplankton were characterized by low stocks, NPP, F{sub v}/F{sub m} (N-limited), and were dominated by picoplankton. The HNLC waters at K2 were characterized by both two-fold changes in NPP and floristic shifts (high to low proportion of diatoms) between deployment 1 and 2. Prediction of export exiting the euphotic zone was based on size-partitioning of NPP, a copepod-dominated foodweb and a ratio of 0.2 (ALOHA) and 0.1 (K2) for algal:faecal particle flux. Predicted export was 20-22 mg POC m{sup -2} d{sup -1} at ALOHA (i.e. 10-11% NPP (0-125 m); 1.1-1.2 x export flux at 150 m (E{sub 150}). At K2, export was 111 mg C m{sup -2} d{sup -1} (21% NPP (0-50 m); 1.8 x E{sub 150}) and 33 mg POC m{sup -2} d{sup -1} (11% NPP, 0-55 m); 1.4 x E{sub 150}) for deployments 1 and 2, respectively. This decrease in predicted export at K2 matches the observed trend for E{sub 150}. Also, the low attenuation of export flux from 60 to 150 m is consistent with that between 150 to 500 m. This strong surface-subsurface coupling suggests that phytoplankton productivity and floristics play a key role at K2 in setting export flux, and moreover that pelagic particle transformations by grazers strongly influence

  10. Quantifying the surface subsurface biogeochemical coupling during the VERTIGO ALOHA and K2 studies

    NASA Astrophysics Data System (ADS)

    Boyd, Philip W.; Gall, Mark P.; Silver, Mary W.; Coale, Susan L.; Bidigare, Robert R.; Bishop, James L. K. B.

    2008-07-01

    A central question addressed by the VERtical Transport In the Global Ocean (VERTIGO) study was 'What controls the efficiency of particle export between the surface and subsurface ocean'? Here, we present data from sites at ALOHA (N Central Pacific Gyre) and K2 (NW subarctic Pacific) on phytoplankton processes, and relate them via a simple planktonic foodweb model, to subsurface particle export (150-500 m). Three key factors enable quantification of the surface-subsurface coupling: a sampling design to overcome the temporal lag and spatial displacement between surface and subsurface processes; data on the size partitioning of net primary production (NPP) and subsequent transformations prior to export; estimates of the ratio of algal- to faecal-mediated vertical export flux. At ALOHA, phytoplankton were characterized by low stocks, NPP, Fv/ Fm (N-limited), and were dominated by picoplankton. The HNLC waters at K2 were characterized by both two-fold changes in NPP and floristic shifts (high to low proportion of diatoms) between deployment 1 and 2. Prediction of export exiting the euphotic zone was based on size partitioning of NPP, a copepod-dominated foodweb and a ratio of 0.2 (ALOHA) and 0.1 (K2) for algal:faecal particle flux. Predicted export was 20-22 mg POC m -2 d -1 at ALOHA (i.e. 10-11% NPP (0-125 m); 1.1-1.2×export flux at 150 m ( E150). At K2, export was 111 mg C m -2 d -1 (21% NPP (0-50 m); 1.8× E150) and 33 mg POC m -2 d -1 (11% NPP, 0-55 m); 1.4× E150) for deployments 1 and 2, respectively. This decrease in predicted export at K2 matches the observed trend for E150. Also, the low attenuation of export flux from 60 to 150 m is consistent with that between 150 and 500 m. This strong surface-subsurface coupling suggests that phytoplankton productivity and floristics play a key role at K2 in setting export flux, and moreover that pelagic particle transformations by grazers strongly influence to what extent sinking particles are further broken down in the

  11. Compound-specific isotopic analyses: a novel tool for reconstruction of ancient biogeochemical processes

    NASA Technical Reports Server (NTRS)

    Hayes, J. M.; Freeman, K. H.; Popp, B. N.; Hoham, C. H.

    1990-01-01

    Patterns of isotopic fractionation in biogeochemical processes are reviewed and it is suggested that isotopic fractionations will be small when substrates are large. If so, isotopic compositions of biomarkers will reflect those of their biosynthetic precursors. This prediction is tested by consideration of results of analyses of geoporphyrins and geolipids from the Greenhorn Formation (Cretaceous, Western Interior Seaway of North America) and the Messel Shale (Eocene, lacustrine, southern Germany). It is shown (i) that isotopic compositions of porphyrins that are related to a common source, but which have been altered structurally, cluster tightly and (ii) that isotopic differences between geolipids and porphyrins related to a common source are equal to those observed in modern biosynthetic products. Both of these observations are consistent with preservation of biologically controlled isotopic compositions during diagenesis. Isotopic compositions of individual compounds can thus be interpreted in terms of biogeochemical processes in ancient depositional environments. In the Cretaceous samples, isotopic compositions of n-alkanes are covariant with those of total organic carbon, while delta values for pristane and phytane are covariant with those of porphyrins. In this unit representing an open marine environment, the preserved acyclic polyisoprenoids apparently derive mainly from primary material, while the extractable, n-alkanes derive mainly from lower levels of the food chain. In the Messel Shale, isotopic compositions of individual biomarkers range from -20.9 to -73.4% vs PDB. Isotopic compositions of specific compounds can be interpreted in terms of origin from methylotrophic, chemautotrophic, and chemolithotrophic microorganisms as well as from primary producers that lived in the water column and sediments of this ancient lake.

  12. Spatial dynamics of biogeochemical processes in the St. Louis River freshwater estuary

    EPA Science Inventory

    In the Great Lakes, river-lake transition zones within freshwater estuaries are hydrologically and biogeochemically dynamic areas that regulate nutrient and energy fluxes between rivers and Great Lakes. The goal of our study was to characterize the biogeochemical properties of th...

  13. Isotope biogeochemical assessment of natural biodegradation processes in open cast pit mining landscapes

    NASA Astrophysics Data System (ADS)

    Jeschke, Christina; Knöller, Kay; Koschorreck, Matthias; Ussath, Maria; Hoth, Nils

    2014-05-01

    In Germany, a major share of the energy production is based on the burning of lignite from open cast pit mines. The remediation and re-cultivation of the former mining areas in the Lusatian and Central German lignite mining district is an enormous technical and economical challenge. After mine closures, the surrounding landscapes are threatened by acid mine drainage (AMD), i.e. the acidification and mineralization of rising groundwater with metals and inorganic contaminants. The high content of sulfur (sulfuric acid, sulfate), nitrogen (ammonium) and iron compounds (iron-hydroxides) deteriorates the groundwater quality and decelerates sustainable development of tourism in (former) mining landscapes. Natural biodegradation or attenuation (NA) processes of inorganic contaminants are considered to be a technically low impact and an economically beneficial solution. The investigations of the stable isotope compositions of compounds involved in NA processes helps clarify the dynamics of natural degradation and provides specific informations on retention processes of sulfate and nitrogen-compounds in mine dump water, mine dump sediment, and residual pit lakes. In an active mine dump we investigated zones where the process of bacterial sulfate reduction, as one very important NA process, takes place and how NA can be enhanced by injecting reactive substrates. Stable isotopes signatures of sulfur and nitrogen components were examined and evaluated in concert with hydrogeochemical data. In addition, we delineated the sources of ammonium pollution in mine dump sediments and investigated nitrification by 15N-labeling techniques to calculate the limit of the conversion of harmful ammonium to nitrate in residual mining lakes. Ultimately, we provided an isotope biogeochemical assessment of natural attenuation of sulfate and ammonium at mine dump sites and mining lakes. Also, we estimated the risk potential for water in different compartments of the hydrological system. In

  14. Evaluation of Boundless Biogeochemical Cycle through Development of Process-Based Eco-Hydrological and Biogeochemical Cycle Model to Incorporate Terrestrial-Aquatic Continuum

    NASA Astrophysics Data System (ADS)

    Nakayama, T.; Maksyutov, S. S.

    2014-12-01

    Inland water might act as important transport pathway for continental biogeochemical cycle although its contribution has remained uncertain yet due to a paucity of data (Battin et al. 2009). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which incorporates surface-groundwater interactions, includes up- and down-scaling processes between local-regional-global scales, and can simulate iteratively nonlinear feedback between hydrologic-geomorphic-ecological processes. Because NICE incorporates 3-D groundwater sub-model and expands from previous 1- or 2-D or steady state, the model can simulate the lateral transport pronounced at steeper-slope or riparian/floodplain with surface-groundwater connectivity. River discharge and groundwater level simulated by NICE agreed reasonably with those in previous researches (Niu et al., 2007; Fan et al., 2013) and extended to clarify lateral subsurface also has important role on global hydrologic cycle (Nakayama, 2011b; Nakayama and Shankman, 2013b) though the resolution was coarser. NICE was further developed to incorporate biogeochemical cycle including reaction between inorganic and organic carbons in terrestrial and aquatic ecosystems. The missing role of carbon cycle simulated by NICE, for example, CO2 evasion from inland water (global total flux was estimated as about 1.0 PgC/yr), was relatively in good agreement in that estimated by empirical relation using previous pCO2 data (Aufdenkampe et al., 2011; Laruelle et al., 2013). The model would play important role in identification of greenhouse gas balance of the biosphere and spatio-temporal hot spots, and bridging gap between top-down and bottom-up approaches (Cole et al. 2007; Frei et al. 2012).

  15. Saltwater intrusion into tidal freshwater marshes alters the biogeochemical processing of organic carbon

    NASA Astrophysics Data System (ADS)

    Neubauer, S. C.; Franklin, R. B.; Berrier, D. J.

    2013-12-01

    Environmental perturbations in wetlands affect the integrated plant-microbial-soil system, causing biogeochemical responses that can manifest at local to global scales. The objective of this study was to determine how saltwater intrusion affects carbon mineralization and greenhouse gas production in coastal wetlands. Working with tidal freshwater marsh soils that had experienced ~ 3.5 yr of in situ saltwater additions, we quantified changes in soil properties, measured extracellular enzyme activity associated with organic matter breakdown, and determined potential rates of anaerobic carbon dioxide (CO2) and methane (CH4) production. Soils from the field plots treated with brackish water had lower carbon content and higher C : N ratios than soils from freshwater plots, indicating that saltwater intrusion reduced carbon availability and increased organic matter recalcitrance. This was reflected in reduced activities of enzymes associated with the hydrolysis of cellulose and the oxidation of lignin, leading to reduced rates of soil CO2 and CH4 production. The effects of long-term saltwater additions contrasted with the effects of short-term exposure to brackish water during three-day laboratory incubations, which increased rates of CO2 production but lowered rates of CH4 production. Collectively, our data suggest that the long-term effect of saltwater intrusion on soil CO2 production is indirect, mediated through the effects of elevated salinity on the quantity and quality of autochthonous organic matter inputs to the soil. In contrast, salinity, organic matter content, and enzyme activities directly influence CH4 production. Our analyses demonstrate that saltwater intrusion into tidal freshwater marshes affects the entire process of carbon mineralization, from the availability of organic carbon through its terminal metabolism to CO2 and/or CH4, and illustrate that long-term shifts in biogeochemical functioning are not necessarily consistent with short

  16. Saltwater intrusion into tidal freshwater marshes alters the biogeochemical processing of organic carbon

    NASA Astrophysics Data System (ADS)

    Neubauer, S. C.; Franklin, R. B.; Berrier, D. J.

    2013-07-01

    Environmental perturbations in wetlands affect the integrated plant-microbial-soil system, causing biogeochemical responses that can manifest at local to global scales. The objective of this study was to determine how saltwater intrusion affects carbon mineralization and greenhouse gas production in coastal wetlands. Working with tidal freshwater marsh soils that had experienced roughly 3.5 yr of in situ saltwater additions, we quantified changes in soil properties, measured extracellular enzyme activity associated with organic matter breakdown, and determined potential rates of anaerobic carbon dioxide (CO2) and methane (CH4) production. Soils from the field plots treated with brackish water had lower carbon content and higher C : N ratios than soils from freshwater plots, indicating that saltwater intrusion reduced carbon availability and increased organic matter recalcitrance. This was reflected in reduced activities of enzymes associated with the hydrolysis of cellulose and the oxidation of lignin, leading to reduced rates of soil CO2 and CH4 production. The effects of long-term saltwater additions contrasted with the effects of short-term exposure to brackish water during three-day laboratory incubations, which increased rates of CO2 production but lowered rates of CH4 production. Collectively, our data suggest that the long-term effect of saltwater intrusion on soil CO2 production is indirect, mediated through the effects of elevated salinity on the quantity and quality of autochthonous organic matter inputs to the soil. In contrast, salinity, organic matter content, and enzyme activities directly influence CH4 production. Our analyses demonstrate that saltwater intrusion into tidal freshwater marshes affects the entire process of carbon mineralization, from the availability of organic carbon through its terminal metabolism to CO2 and/or CH4, and illustrate that long-term shifts in biogeochemical functioning are not necessarily consistent with short

  17. New Insights from Electrochemical Noise: A Coupled Biogeochemical and Electrochemical Investigation of an Anoxic Groundwater Seep

    NASA Astrophysics Data System (ADS)

    Enright, A. M.; Ferris, F. G.

    2013-12-01

    Understanding the electrochemical properties of microbial processes is a significant step towards developing physical and chemical signatures of biotic activity and the impact of microbes within Earth systems. Electrochemical noise techniques, borrowed from corrosion science, hold promise as a method of discerning contributions from chemical reactions occurring in a natural system. These techniques rely exclusively on measurements of fluctuation in potential or current to assess different chemical contributors. To this end, a coupled electrochemical and geochemical study of flocculent ocherous mats of bacteriogenic iron oxides in an anoxic, neutral pH groundwater seep near Deep River, Ontario, Canada, was undertaken. Hydrogeochemical properties, including redox potential, dissolved oxygen, and dissolved ferrous and total iron concentrations were measured in a series of three microcosms. (A), a chemical control of 0.22 μm filtered groundwater; (B) an abiotic control with 50 mL of autoclaved biogenic iron oxides (BIOS), and (C), a live microcosm with 50 mL of BIOS. All BIOS and groundwater samples were collected at a distance of 200 cm from the spring source using sterile syringes, and measurements were recorded every 30 minutes over a period of two hours from initial collection. Redox potential was measured using a Pt/Ag/Ag-Cl electrode and a National Instruments data-acquisition device (DAQ) at a frequency of 200 Hz for 60 seconds at 30 minute intervals, for the purpose of electrochemical noise analysis. After 120 minutes, for microcosm (A), 75% of the initial total dissolved iron remained in solution, as well as 32% of the initial dissolved ferrous iron. The pseudo-first order rate constant for Fe2+ oxidation was 0.007 min-1. Dissolved oxygen increased from 1.40 mg/L to 2.74 mg/L, and redox potential remained relatively constant at approximately 248 mV, relative to the standard hydrogen electrode (SHE), over this time interval. In microcosm (B), 16% of the total

  18. Biogeochemical Coupling of Fe and Tc Speciation in Subsurface Sediments: Implications to Long-Term Tc Immobilization

    SciTech Connect

    Jim K. Fredrickson; C. I. Steefel; R. K. Kukkadapu; S. M. Heald

    2006-06-01

    The project has been focused on biochemical processes in subsurface sediments involving Fe that control the valence state, solubility, and effective mobility of 99Tc. Our goal has been to understand the Tc biogeochemistry as it may occur in suboxic and biostimulated subsurface environments. Two objectives have been pursued: (1) To determine the relative reaction rates of 99Tc(VII)O2(aq) with metal reducing bacteria and biogenic Fe(II); and to characterize the identity, structure, and molecular speciation of Tc(IV) products formed through reaction with both biotic and abiotic reductants. (2) To quantify the biogeochemical factors controlling the reaction rate of O2 with Tc(IV)O2?nH2O in sediment resulting from the direct enzymatic reduction of Tc(VII) by DIRB and/or the reaction of Tc(VII) with the various types of biogenic Fe(II) produced by DIRB.

  19. Integrated Biogeochemical and Hydrologic Processes Driving Arsenic Release from Shallow Sediments to Groundwaters of the Mekong Delta

    SciTech Connect

    Kocar, Benjamin D.; Polizzotto, Matthew L.; Benner, Shawn G.; Ying, Samantha C.; Ung, Mengieng; Ouch, Kagna; Samreth, Sopheap; Suy, Bunseang; Phan, Kongkea; Sampson, Michael; Fendorf, Scott

    2008-11-01

    Arsenic is contaminating the groundwater of Holocene aquifers throughout South and Southeast Asia. To examine the biogeochemical and hydrological processes influencing dissolved concentrations and transport of As within soils/sediments in the Mekong River delta, a ~50 km₂ field site was established near Phnom Penh, Cambodia, where aqueous As concentrations are dangerously high and where groundwater retrieval for irrigation is minimal. Dissolved As concentrations vary spatially, ranging up to 1300 µg/L in aquifer groundwater and up to 600 µg/L in surficial clay pore water. Groundwaters with high As concentrations are reducing with negligible dissolved O₂ and high concentrations of Fe(II), NH⁺₄ , and dissolved organic C. Within near-surface environments, these conditions are most pronounced in sediments underlying permanent wetlands, often found within oxbow channels near the Mekong River. There, labile C, co-deposited with As-bearing Fe (hydr)oxides under reducing conditions, drives the reductive mobilization (inclusive of Fe and As reduction) of As. Here, conditions are described under which As is mobilized from these sediments, and near-surface As release is linked to aquifer contamination over long time periods (100s to 1000s of years). Site biogeochemistry is coupled with extensive hydrologic measurements, and, accordingly, a comprehensive interpretation of spatial As release and transport within a calibrated hydraulic flow-field is provided of an As-contaminated aquifer that is representative of those found throughout South and Southeast Asia.

  20. Perirheic mixing and biogeochemical processing in flow-through and backwater floodplain wetlands

    NASA Astrophysics Data System (ADS)

    Jones, C. Nathan; Scott, Durelle T.; Edwards, Brandon L.; Keim, Richard F.

    2014-09-01

    Inundation hydrology and associated processes control biogeochemical processing in floodplains. To better understand how hydrologic connectivity, residence time, and intrafloodplain mixing vary in floodplain wetlands, we examined how water quality of two contrasting areas in the floodplain of the Atchafalaya River—a flow-through and a backwater wetland—responded to an annual flood pulse. Large, synoptic sampling campaigns occurred in both wetlands during the rising limb, peak, and falling limb of the hydrograph. Using a combination of conservative and reactive tracers, we inferred three dominant processes that occurred over the course of the flood pulse: flushing (rising limb), advective transport (peak), and organic matter accumulation (falling limb). Biogeochemistry of the two wetlands was similar during the peak while the river overflowed into both. However, during the rising and falling limbs, flow in the backwater wetland experienced much greater residence time. This led to the accumulation of dissolved organic matter and dissolved phosphorus. There were also elevated ratios of dissolved organic carbon to nitrate in the backwater wetland, suggesting nitrogen removal was limited by nitrate transported into the floodplain there. Collectively, our results suggest inclusion of a temporal component into the perirheic concept more fully describes inundation hydrology and biogeochemistry in large river floodplain. This article was corrected on 6 OCT 2014. See the end of the full text for details

  1. Hydromechanical coupling in geologic processes

    USGS Publications Warehouse

    Neuzil, C.E.

    2003-01-01

    Earth's porous crust and the fluids within it are intimately linked through their mechanical effects on each other. This paper presents an overview of such "hydromechanical" coupling and examines current understanding of its role in geologic processes. An outline of the theory of hydromechanics and rheological models for geologic deformation is included to place various analytical approaches in proper context and to provide an introduction to this broad topic for nonspecialists. Effects of hydromechanical coupling are ubiquitous in geology, and can be local and short-lived or regional and very long-lived. Phenomena such as deposition and erosion, tectonism, seismicity, earth tides, and barometric loading produce strains that tend to alter fluid pressure. Resulting pressure perturbations can be dramatic, and many so-called "anomalous" pressures appear to have been created in this manner. The effects of fluid pressure on crustal mechanics are also profound. Geologic media deform and fail largely in response to effective stress, or total stress minus fluid pressure. As a result, fluid pressures control compaction, decompaction, and other types of deformation, as well as jointing, shear failure, and shear slippage, including events that generate earthquakes. By controlling deformation and failure, fluid pressures also regulate states of stress in the upper crust. Advances in the last 80 years, including theories of consolidation, transient groundwater flow, and poroelasticity, have been synthesized into a reasonably complete conceptual framework for understanding and describing hydromechanical coupling. Full coupling in two or three dimensions is described using force balance equations for deformation coupled with a mass conservation equation for fluid flow. Fully coupled analyses allow hypothesis testing and conceptual model development. However, rigorous application of full coupling is often difficult because (1) the rheological behavior of geologic media is complex

  2. The effect of gold mining and processing on biogeochemical cycles in Muteh area, Isfahan province, Iran

    NASA Astrophysics Data System (ADS)

    Keshavarzi, B.; Moore, F.

    2009-04-01

    The environmental impacts of gold mining and processing on geochemical and biogeochemical cycles in Muteh region located northwest of Esfahan province and northeast of Golpaygan city is investigated. For this purpose systematic sampling was carried out in, rock, soil, water, and sediment environments along with plant, livestocks and human hair samples. Mineralogical and Petrological studies show that ore mineral such as pyrite and arsenopyrite along with fluorine-bearing minerals like tremolite, actinolite, biotite and muscovite occur in green schist, amphibolite and lucogranitic rocks in the area. The hydrochemistry of the analysed water samples indicate that As and F display the highest concentrations among the analysed elements. Indeed arsenic has the highest concentration in both topsoil and subsoil samples when compared with other potentially toxic elements. Anthropogenic activity also have it s greatest effect on increasing arsenic concentration among the analysed samples. The concentration of the majority of the analysed elements in the shoots and leaves of two local plants of the region i.e Artemesia and Penagum is higher than their concentration in the roots. Generally speaking, Artemesia has a greater tendency for bioaccumulating heavy metals. The results of cyanide analysis in soil samples show that cyanide concentration in the soils near the newly built tailing dam is much higher than that in the vicinity of the old tailing dam. The high concentration of fluorine in the drinking water of the Muteh village is the main reason of the observed dental fluorosis symptoms seen in the inhabitants. One of the two drinking water wells which is located near the metamorphic complex and supplies part of the tap water in the village, probably has the greatest impact in this regard. A decreasing trend in fluorine concentration is illustrated with increasing distance from the metamorphic complex. Measurements of As concentration in human hair specimens indicate that As

  3. Caught in the flux net: disentangling error, uncertainty, heterogeneity, and spatial process in biogeochemical scaling

    NASA Astrophysics Data System (ADS)

    Dietze, M.

    2014-12-01

    Attempts to link observations across multiple scales, and in particular the problem of scaling up fine-scale observations to landscape and regional process, faces numerous theoretical, computational, and statistical challenges. This talk aims to link theoretical advances in the scaling of biotic heterogeneity, abiotic heterogeneity, and contagious disturbance with statistical advances for linking observations that integrate over different scales. Critical to this goal is the need to partition sources of uncertainty and variability. In particular, the variance you can calculate most readily is rarely the most important or relevant one to quantify. In community ecology, hierarchical Bayes (HB) latent-variable models that separate true variability in ecosystem processes from observation errors have challenged long-standing theory surrounding the maintenance of biodiversity, yet application of such approaches to regional-scale biogeochemical processes is just beginning. A special case of such models, focused on the change of support problem, deal specifically with linking observations that integrate over different spatial and temporal scales. Occurring in parallel with these statistical advances have been the development of new theories for the spatially-implicit scaling of biotic and abiotic heterogeneity, as well as contagious disturbances such as fire and pathogens, and the incorporation of such approaches into process-based ecosystem models. Such approaches upscale by integrating the probability distributions of system heterogeneity over the functional response of the ecosystem to such heterogeneity. We demonstrate that this approach can also be downscaled by conditioning on incomplete partial observation at a local scale, and can have lower uncertainty than brute-force spatially-explicit approaches. We also extend such approaches from integrating over observed heterogeneities to integrating the latent, high-dimensional variability in HB models. Finally, there is a

  4. Determination of dominant biogeochemical processes in a contaminated aquifer-wetland system using multivariate statistical analysis

    USGS Publications Warehouse

    Baez-Cazull, S. E.; McGuire, J.T.; Cozzarelli, I.M.; Voytek, M.A.

    2008-01-01

    Determining the processes governing aqueous biogeochemistry in a wetland hydrologically linked to an underlying contaminated aquifer is challenging due to the complex exchange between the systems and their distinct responses to changes in precipitation, recharge, and biological activities. To evaluate temporal and spatial processes in the wetland-aquifer system, water samples were collected using cm-scale multichambered passive diffusion samplers (peepers) to span the wetland-aquifer interface over a period of 3 yr. Samples were analyzed for major cations and anions, methane, and a suite of organic acids resulting in a large dataset of over 8000 points, which was evaluated using multivariate statistics. Principal component analysis (PCA) was chosen with the purpose of exploring the sources of variation in the dataset to expose related variables and provide insight into the biogeochemical processes that control the water chemistry of the system. Factor scores computed from PCA were mapped by date and depth. Patterns observed suggest that (i) fermentation is the process controlling the greatest variability in the dataset and it peaks in May; (ii) iron and sulfate reduction were the dominant terminal electron-accepting processes in the system and were associated with fermentation but had more complex seasonal variability than fermentation; (iii) methanogenesis was also important and associated with bacterial utilization of minerals as a source of electron acceptors (e.g., barite BaSO4); and (iv) seasonal hydrological patterns (wet and dry periods) control the availability of electron acceptors through the reoxidation of reduced iron-sulfur species enhancing iron and sulfate reduction. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

  5. Biogeochemical processes controlling density stratification in an iron-meromictic lake

    NASA Astrophysics Data System (ADS)

    Nixdorf, E.; Boehrer, B.

    2015-06-01

    Biogeochemical processes and mixing regime of a lake can control each other mutually. The prominent case of iron meromixis is investigated in Waldsee near Doebern, a small lake that originated from surface mining of lignite. From a four years data set of monthly measured electrical conductivity profiles, we calculated summed conductivity as a quantitative variable reflecting the amount of electro-active substances in the entire lake. Seasonal variations followed changing chemocline height. Coinciding changes of electrical conductivities in the monimolimnion indicated that a considerable share of substances, precipitated by the advancing oxygenated epilimnion, re-dissolved in the remaining anoxic deep waters and contributed considerably to the density stratification. In addition, we constructed a lab experiment, in which aeration of monimolimnetic waters removed iron compounds and organic material. Precipitates could be identified by visual inspection. Introduced air bubbles ascended through the water column and formed a water mass similar to the mixolimnetic Waldsee water. The remaining less dense water remained floating on the nearly unchanged monimolimnetic water. In conclusion, iron meromixis as seen in Waldsee did not require two different sources of incoming waters, but the inflow of iron rich deep groundwater and the aeration through the lake surface were fully sufficient.

  6. Seasonal Variation in Floodplain Biogeochemical Processing in a Restored Headwater Stream.

    PubMed

    Jones, C Nathan; Scott, Durelle T; Guth, Christopher; Hester, Erich T; Hession, W Cully

    2015-11-17

    Stream and river restoration activities have recently begun to emphasize the enhancement of biogeochemical processing within river networks through the restoration of river-floodplain connectivity. It is generally accepted that this practice removes pollutants such as nitrogen and phosphorus because the increased contact time of nutrient-rich floodwaters with reactive floodplain sediments. Our study examines this assumption in the floodplain of a recently restored, low-order stream through five seasonal experiments. During each experiment, a floodplain slough was artificially inundated for 3 h. Both the net flux of dissolved nutrients and nitrogen uptake rate were measured during each experiment. The slough was typically a source of dissolved phosphorus and dissolved organic matter, a sink of NO3(-), and variable source/sink of ammonium. NO3(-) uptake rates were relatively high when compared to riverine uptake, especially during the spring and summer experiments. However, when scaled up to the entire 1 km restoration reach with a simple inundation model, less than 0.5-1.5% of the annual NO3(-) load would be removed because of the short duration of river-floodplain connectivity. These results suggest that restoring river-floodplain connectivity is not necessarily an appropriate best management practice for nutrient removal in low-order streams with legacy soil nutrients from past agricultural landuse. PMID:26463837

  7. Seasonal Variation in Floodplain Biogeochemical Processing in a Restored Headwater Stream.

    PubMed

    Jones, C Nathan; Scott, Durelle T; Guth, Christopher; Hester, Erich T; Hession, W Cully

    2015-11-17

    Stream and river restoration activities have recently begun to emphasize the enhancement of biogeochemical processing within river networks through the restoration of river-floodplain connectivity. It is generally accepted that this practice removes pollutants such as nitrogen and phosphorus because the increased contact time of nutrient-rich floodwaters with reactive floodplain sediments. Our study examines this assumption in the floodplain of a recently restored, low-order stream through five seasonal experiments. During each experiment, a floodplain slough was artificially inundated for 3 h. Both the net flux of dissolved nutrients and nitrogen uptake rate were measured during each experiment. The slough was typically a source of dissolved phosphorus and dissolved organic matter, a sink of NO3(-), and variable source/sink of ammonium. NO3(-) uptake rates were relatively high when compared to riverine uptake, especially during the spring and summer experiments. However, when scaled up to the entire 1 km restoration reach with a simple inundation model, less than 0.5-1.5% of the annual NO3(-) load would be removed because of the short duration of river-floodplain connectivity. These results suggest that restoring river-floodplain connectivity is not necessarily an appropriate best management practice for nutrient removal in low-order streams with legacy soil nutrients from past agricultural landuse.

  8. Linking Food Webs and Biogeochemical Processes in Wetlands: Insights From Sulfur Isotopes

    NASA Astrophysics Data System (ADS)

    Stricker, C. A.; Guntenspergen, G. R.; Rye, R. O.

    2005-05-01

    To better understand the transfer of nutrients into prairie wetland food webs we have investigated the cycling of S (via S isotope systematics and geochemistry) in a prairie wetland landscape by characterizing sources (ground water, interstitial water, surface water) and processes in a small catchment comprised of four wetlands in eastern South Dakota. We focused on S to derive process information that is not generally available from carbon isotopes alone. The wetlands chosen for study spanned a considerable range in SO4 concentration (0.1-13.6 mM), which corresponded with landscape position. Ground water δ34SSO4 values remained relatively constant (mean = -13.2 per mil) through time. However, δ34SSO4 values of wetland surface waters ranged from -2.9 to -30.0 per mil (CDT) and were negatively correlated with SO4 concentrations (p<0.05). The isotopic variability of surface water SO4 resulted from mixing with re-oxidized sulfides associated with recently flushed wetland soils. The δ34S signatures of wetland primary (Gastropoda: Stagnicola elodes) and secondary (Odonata: Anax sp.) consumers were significantly related to surface water δ34SSO4 values (p<0.05) suggesting that food web components were responding to changes in the isotopic composition of the S source. Both primary and secondary consumer δ34S signatures differed between wetlands (ANOVA, p<0.05). These data illustrate the complexity of S cycling in prairie wetlands and the influence of wetland hydrologic and biogeochemical processes on prairie wetland food webs. Additionally, this work has demonstrated that sulfur isotopes can provide unique source and process information that cannot be derived from traditional carbon and nitrogen isotope studies.

  9. New HYDRUS Modules for Simulating Preferential Flow, Colloid-Facilitated Contaminant Transport, and Various Biogeochemical Processes in Soils

    NASA Astrophysics Data System (ADS)

    Simunek, J.; Sejna, M.; Jacques, D.; Langergraber, G.; Bradford, S. A.; van Genuchten, M. Th.

    2012-04-01

    We have dramatically expanded the capabilities of the HYDRUS (2D/3D) software package by developing new modules to account for processes not available in the standard HYDRUS version. These new modules include the DualPerm, C-Hitch, HP2/3, Wetland, and Unsatchem modules. The dual-permeability modeling approach of Gerke and van Genuchten [1993] simulating preferential flow and transport is implemented into the DualPerm module. Colloid transport and colloid-facilitated solute transport, the latter often observed for many contaminants, such as heavy metals, radionuclides, pharmaceuticals, pesticides, and explosives [Šimůnek et al., 2006] are implemented into the C-Hitch module. HP2 and HP3 are the two and three-dimensional alternatives of the HP1 module, currently available with HYDRUS-1D [Jacques and Šimůnek, 2005], that couple HYDRUS flow and transport routines with the generic geochemical model PHREEQC of Parkhurst and Appelo [1999]. The Wetland module includes two alternative approaches (CW2D of Langergraber and Šimůnek [2005] and CWM1 of Langergraber et al. [2009]) for modeling aerobic, anaerobic, and anoxic biogeochemical processes in natural and constructed wetlands. Finally, the Unsatchem module simulates the transport and reactions of major ions in a soil profile. Brief descriptions and an application of each module will be presented. Except for HP3, all modules simulate flow and transport processes in two-dimensional transport domains. All modules are fully supported by the HYDRUS graphical user interface. Further development of these modules, as well as of several other new modules (such as Overland), is still envisioned. Continued feedback from the research community is encouraged.

  10. Cumulative Significance of Hyporheic Exchange and Biogeochemical Processing in River Networks

    NASA Astrophysics Data System (ADS)

    Harvey, J. W.; Gomez-Velez, J. D.

    2014-12-01

    Biogeochemical reactions in rivers that decrease excessive loads of nutrients, metals, organic compounds, etc. are enhanced by hydrologic interactions with microbially and geochemically active sediments of the hyporheic zone. The significance of reactions in individual hyporheic flow paths has been shown to be controlled by the contact time between river water and sediment and the intrinsic reaction rate in the sediment. However, little is known about how the cumulative effects of hyporheic processing in large river basins. We used the river network model NEXSS (Gomez-Velez and Harvey, submitted) to simulate hyporheic exchange through synthetic river networks based on the best available models of network topology, hydraulic geometry and scaling of geomorphic features, grain size, hydraulic conductivity, and intrinsic reaction rates of nutrients and metals in river sediment. The dimensionless reaction significance factor, RSF (Harvey et al., 2013) was used to quantify the cumulative removal fraction of a reactive solute by hyporheic processing. SF scales reaction progress in a single pass through the hyporheic zone with the proportion of stream discharge passing through the hyporheic zone for a specified distance. Reaction progress is optimal where the intrinsic reaction timescale in sediment matches the residence time of hyporheic flow and is less efficient in longer residence time hyporheic flow as a result of the decreasing proportion of river flow that is processed by longer residence time hyporheic flow paths. In contrast, higher fluxes through short residence time hyporheic flow paths may be inefficient because of the repeated surface-subsurface exchanges required to complete the reaction. Using NEXSS we found that reaction efficiency may be high in both small streams and large rivers, although for different reasons. In small streams reaction progress generally is dominated by faster pathways of vertical exchange beneath submerged bedforms. Slower exchange

  11. Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin

    NASA Astrophysics Data System (ADS)

    Hagens, M.; Slomp, C. P.; Meysman, F. J. R.; Seitaj, D.; Harlay, J.; Borges, A. V.; Middelburg, J. J.

    2014-11-01

    Coastal areas are impacted by multiple natural and anthropogenic processes and experience stronger pH fluctuations than the open ocean. These variations can weaken or intensify the ocean acidification signal induced by increasing atmospheric pCO2. The development of eutrophication-induced hypoxia intensifies coastal acidification, since the CO2 produced during respiration decreases the buffering capacity of the hypoxic bottom water. To assess the combined ecosystem impacts of acidification and hypoxia, we quantified the seasonal variation in pH and oxygen dynamics in the water column of a seasonally stratified coastal basin (Lake Grevelingen, the Netherlands). Monthly water column chemistry measurements were complemented with estimates of primary production and respiration using O2 light-dark incubations, in addition to sediment-water fluxes of dissolved inorganic carbon (DIC) and total alkalinity (TA). The resulting dataset was used to set up a proton budget on a seasonal scale. Temperature-induced seasonal stratification combined with a high community respiration was responsible for the depletion of oxygen in the bottom water in summer. The surface water showed strong seasonal variation in process rates (primary production, CO2 air-sea exchange), but relatively small seasonal pH fluctuations (0.46 units on the total hydrogen ion scale). In contrast, the bottom water showed less seasonality in biogeochemical rates (respiration, sediment-water exchange), but stronger pH fluctuations (0.60 units). This marked difference in pH dynamics could be attributed to a substantial reduction in the acid-base buffering capacity of the hypoxic bottom water in the summer period. Our results highlight the importance of acid-base buffering in the pH dynamics of coastal systems and illustrate the increasing vulnerability of hypoxic, CO2-rich waters to any acidifying process.

  12. Biogeochemical processes and buffering capacity concurrently affect acidification in a seasonally hypoxic coastal marine basin

    NASA Astrophysics Data System (ADS)

    Hagens, M.; Slomp, C. P.; Meysman, F. J. R.; Seitaj, D.; Harlay, J.; Borges, A. V.; Middelburg, J. J.

    2015-03-01

    Coastal areas are impacted by multiple natural and anthropogenic processes and experience stronger pH fluctuations than the open ocean. These variations can weaken or intensify the ocean acidification signal induced by increasing atmospheric pCO2. The development of eutrophication-induced hypoxia intensifies coastal acidification, since the CO2 produced during respiration decreases the buffering capacity in any hypoxic bottom water. To assess the combined ecosystem impacts of acidification and hypoxia, we quantified the seasonal variation in pH and oxygen dynamics in the water column of a seasonally stratified coastal basin (Lake Grevelingen, the Netherlands). Monthly water-column chemistry measurements were complemented with estimates of primary production and respiration using O2 light-dark incubations, in addition to sediment-water fluxes of dissolved inorganic carbon (DIC) and total alkalinity (TA). The resulting data set was used to set up a proton budget on a seasonal scale. Temperature-induced seasonal stratification combined with a high community respiration was responsible for the depletion of oxygen in the bottom water in summer. The surface water showed strong seasonal variation in process rates (primary production, CO2 air-sea exchange), but relatively small seasonal pH fluctuations (0.46 units on the total hydrogen ion scale). In contrast, the bottom water showed less seasonality in biogeochemical rates (respiration, sediment-water exchange), but stronger pH fluctuations (0.60 units). This marked difference in pH dynamics could be attributed to a substantial reduction in the acid-base buffering capacity of the hypoxic bottom water in the summer period. Our results highlight the importance of acid-base buffering in the pH dynamics of coastal systems and illustrate the increasing vulnerability of hypoxic, CO2-rich waters to any acidifying process.

  13. Biogeochemical cycles of Chernobyl-born radionuclides in the contaminated forest ecosystems: long-term dynamics of the migration processes

    NASA Astrophysics Data System (ADS)

    Shcheglov, Alexey; Tsvetnova, Ol'ga; Klyashtorin, Alexey

    2013-04-01

    Biogeochemical migration is a dominant factor of the radionuclide transport through the biosphere. In the early XX century, V.I. Vernadskii, a Russian scientist known, noted about a special role living things play in transport and accumulation of natural radionuclide in various environments. The role of biogeochemical processes in migration and redistribution of technogenic radionuclides is not less important. In Russia, V. M. Klechkovskii and N.V. Timofeev-Ressovskii showed some important biogeochemical aspects of radionuclide migration by the example of global fallout and Kyshtym accident. Their followers, R.M. Alexakhin, M.A. Naryshkin, N.V. Kulikov, F.A. Tikhomirov, E.B. Tyuryukanova, and others also contributed a lot to biogeochemistry of radionuclides. In the post-Chernobyl period, this area of knowledge received a lot of data that allowed building the radioactive element balance and flux estimation in various biogeochemical cycles [Shcheglov et al., 1999]. Regrettably, many of recent radioecological studies are only focused on specific radionuclide fluxes or pursue some applied tasks, missing the holistic approach. Most of the studies consider biogeochemical fluxes of radioactive isotopes in terms of either dose estimation or radionuclide migration rates in various food chains. However, to get a comprehensive picture and develop a reliable forecast of environmental, ecological, and social consequences of radioactive pollution in a vast contaminated area, it is necessary to investigate all the radionuclide fluxes associated with the biogeochemical cycles in affected ecosystems. We believe such an integrated approach would be useful to study long-term environmental consequences of the Fukushima accident as well. In our long-term research, we tried to characterize the flux dynamics of the Chernobyl-born radionuclides in the contaminated forest ecosystems and landscapes as a part of the integrated biogeochemical process. Our field studies were started in June of

  14. Significant Findings: Tracking the SeaWiFS Record with a Coupled Physical/Biogeochemical/Radiative Model of the Global Oceans

    NASA Technical Reports Server (NTRS)

    Watson, Gregg W.

    2000-01-01

    The Sea-Viewing Wide Field-of-view Sensor (SeaWiFS) has observed 2.5 years of routine global chlorophyll observations from space. The mission was launched into a record El Nino event, which eventually gave way to one of the most intensive and longest-lasting La Nina events ever recorded. The SeaWiFS chlorophyll record captured the response of ocean phytoplankton to these significant events in the tropical Indo-Pacific basins, but also indicated significant interannual variability unrelated to the El Nino/La Nina events. This included large variability in the North Atlantic and Pacific basins, in the North Central and equatorial Atlantic, and milder patterns in the North Central Pacific. This SeaWiFS record was tracked with a coupled physical/biogeochemical/radiative model of the global oceans using near-real-time forcing data such as wind stresses, sea surface temperatures, and sea ice. This provided an opportunity to offer physically and biogeochemically meaningful explanations of the variability observed in the SeaWiFS data set, since the causal mechanisms and interrelationships of the model are completely understood. The coupled model was able to represent the seasonal distributions of chlorophyll during the SeaWiFS era, and was capable of differentiating among the widely different processes and dynamics occurring in the global oceans. The model was also reasonably successful in representing the interannual signal, especially when it was large, such as, the El Nino and La Nina events in the tropical Pacific and Indian Oceans. The model provided different phytoplankton group responses for the different events in these regions: diatoms were predominant in the tropical Pacific during the La Nina but other groups were predominant during El Nino. The opposite condition occurred in the tropical Indian Ocean. Both situations were due to the different responses of the basins to El Nino. The interannual variability in the North Atlantic, which was exhibited in Sea

  15. Biogeochemical responses following coral mass spawning on the Great Barrier Reef: pelagic-benthic coupling

    NASA Astrophysics Data System (ADS)

    Wild, C.; Jantzen, C.; Struck, U.; Hoegh-Guldberg, O.; Huettel, M.

    2008-03-01

    This study quantified how the pulse of organic matter from the release of coral gametes triggered a chain of pelagic and benthic processes during an annual mass spawning event on the Australian Great Barrier Reef. Particulate organic matter (POM) concentrations in reef waters increased by threefold to 11-fold the day after spawning and resulted in a stimulation of pelagic oxygen consumption rates that lasted for at least 1 week. Water column microbial communities degraded the organic carbon of gametes of the broadcast-spawning coral Acropora millepora at a rate of >15% h-1, which is about three times faster than the degradation rate measured for larvae of the brooding coral Stylophora pistillata. Stable isotope signatures of POM in the water column reflected the fast transfer of organic matter from coral gametes into higher levels of the food chain, and the amount of POM reaching the seafloor immediately increased after coral spawning and then tailed-off in the next 2 weeks. Short-lasting phytoplankton blooms developed within a few days after the spawning event, indicating a prompt recycling of nutrients released through the degradation of spawning products. These data show the profound effects of coral mass spawning on the reef community and demonstrate the tight recycling of nutrients in this oligotrophic ecosystem.

  16. The "Point Zero": Monitoring of biogeochemical patterns and processes in an initial ecosystem (Lusatia, Germany)

    NASA Astrophysics Data System (ADS)

    Veste, M.; Biemelt, D.; Fischer, A.; Gerwin, W.; Schaaf, W.

    2009-04-01

    .), soil water (TDR, tensiometers), hydrology (stream flow, groundwater, water quality, etc.), erosion, and limnology (water quality). Furthermore, the establishment of higher vegetation (species, pattern) and soil fauna (species, abundance) are investigated and will be related to the physical-chemical soil development. The gathered data are the basis for the calculation of water and element fluxes in the ecosystem and their interactions with the formation of observed structures. A special focus will be on the interactions of the biogeochemical processes on different scales. First results will be presented and discussed.

  17. An integrated multi-level watershed-reservoir modeling system for examining hydrological and biogeochemical processes in small prairie watersheds.

    PubMed

    Zhang, Hua; Huang, Guo H; Wang, Dunling; Zhang, Xiaodong; Li, Gongchen; An, Chunjiang; Cui, Zheng; Liao, Renfei; Nie, Xianghui

    2012-03-15

    Eutrophication of small prairie reservoirs presents a major challenge in water quality management and has led to a need for predictive water quality modeling. Studies are lacking in effectively integrating watershed models and reservoir models to explore nutrient dynamics and eutrophication pattern. A water quality model specific to small prairie water bodies is also desired in order to highlight key biogeochemical processes with an acceptable degree of parameterization. This study presents a Multi-level Watershed-Reservoir Modeling System (MWRMS) to simulate hydrological and biogeochemical processes in small prairie watersheds. It integrated a watershed model, a hydrodynamic model and an eutrophication model into a flexible modeling framework. It can comprehensively describe hydrological and biogeochemical processes across different spatial scales and effectively deal with the special drainage structure of small prairie watersheds. As a key component of MWRMS, a three-dimensional Willows Reservoir Eutrophication Model (WREM) is developed to addresses essential biogeochemical processes in prairie reservoirs and to generate 3D distributions of various water quality constituents; with a modest degree of parameterization, WREM is able to meet the limit of data availability that often confronts the modeling practices in small watersheds. MWRMS was applied to the Assiniboia Watershed in southern Saskatchewan, Canada. Extensive efforts of field work and lab analysis were undertaken to support model calibration and validation. MWRMS demonstrated its ability to reproduce the observed watershed water yield, reservoir water levels and temperatures, and concentrations of several water constituents. Results showed that the aquatic systems in the Assiniboia Watershed were nitrogen-limited and sediment flux played a crucial role in reservoir nutrient budget and dynamics. MWRMS can provide a broad context of decision support for water resources management and water quality

  18. Soil property control of biogeochemical processes beneath two subtropical stormwater infiltration basins.

    PubMed

    O'Reilly, Andrew M; Wanielista, Martin P; Chang, Ni-Bin; Harris, Willie G; Xuan, Zhemin

    2012-01-01

    Substantially different biogeochemical processes affecting nitrogen fate and transport were observed beneath two stormwater infiltration basins in north-central Florida. Differences are related to soil textural properties that deeply link hydroclimatic conditions with soil moisture variations in a humid, subtropical climate. During 2008, shallow groundwater beneath the basin with predominantly clayey soils (median, 41% silt+clay) exhibited decreases in dissolved oxygen from 3.8 to 0.1 mg L and decreases in nitrate nitrogen (NO-N) from 2.7 mg L to <0.016 mg L, followed by manganese and iron reduction, sulfate reduction, and methanogenesis. In contrast, beneath the basin with predominantly sandy soils (median, 2% silt+clay), aerobic conditions persisted from 2007 through 2009 (dissolved oxygen, 5.0-7.8 mg L), resulting in NO-N of 1.3 to 3.3 mg L in shallow groundwater. Enrichment of δN and δO of NO combined with water chemistry data indicates denitrification beneath the clayey basin and relatively conservative NO transport beneath the sandy basin. Soil-extractable NO-N was significantly lower and the copper-containing nitrite reductase gene density was significantly higher beneath the clayey basin. Differences in moisture retention capacity between fine- and coarse-textured soils resulted in median volumetric gas-phase contents of 0.04 beneath the clayey basin and 0.19 beneath the sandy basin, inhibiting surface/subsurface oxygen exchange beneath the clayey basin. Results can inform development of soil amendments to maintain elevated moisture content in shallow soils of stormwater infiltration basins, which can be incorporated in improved best management practices to mitigate NO impacts.

  19. [Biogeochemical processes of methane cycle in the soils, swamps and lakes of Western Siberia].

    PubMed

    Gal'chenko, V F; Dulov, L E; Cramer, B; Konova, N I; Barysheva, S V

    2001-01-01

    The biogeochemical processes of methane production and oxidation were studied in the upper horizons of tundra and taiga soils and of raised bogs and lake bottom sediments nearby the Tarkosalinsk gas field in western Siberia. Both in dry and water-logged soils, the total methane concentration (in soil particles and gaseous phase) was an order of magnitude higher than in the soil gaseous phase alone (22 and 1.1 nl/cm3, respectively). In bogs and lake bottom sediments, methane concentration was as high as 11 microliters/cm3. Acetate was the major precursor of the newly formed methane. The rate of aceticlastic methanogenesis reached 55 ng C/(cm3 day), whereas that of autotrophic methanogenesis was an order of magnitude lower. The most active methane production and oxidation were observed in bogs and lake sediments where the delta 13C values of CO2 were inversely related to the intensity of bacterial methane oxidation. Methane diffusing from bogs and lake bottom sediments showed delta 13C values ranging from -78 to -47@1000, whereas the delta 13C value of carbon dioxide ranged from -18 to -6@1000. In these ecosystems, methane emission comprised from 3 to 206 mg CH4/(m2 day). Conversely, the dry and water-logged soils of tundra and taiga took up atmospheric methane at a rate varying from 0.3 to 5.3 mg CH4/(m2 day). Methane consumption in soils was of biological rather than of adsorptive nature. This was confirmed by the radioisotopic method and chamber experiments, in which weighting of methane carbon was observed (the delta 13C value changed from -51 to -41@1000). PMID:11386054

  20. Soil property control of biogeochemical processes beneath two subtropical stormwater infiltration basins

    USGS Publications Warehouse

    O'Reilly, Andrew M.; Wanielista, Martin P.; Chang, Ni-Bin; Harris, Willie G.; Xuan, Zhemin

    2012-01-01

    Substantially different biogeochemical processes affecting nitrogen fate and transport were observed beneath two stormwater infiltration basins in north-central Florida. Differences are related to soil textural properties that deeply link hydroclimatic conditions with soil moisture variations in a humid, subtropical climate. During 2008, shallow groundwater beneath the basin with predominantly clayey soils (median, 41% silt+clay) exhibited decreases in dissolved oxygen from 3.8 to 0.1 mg L-1 and decreases in nitrate nitrogen (NO3-–N) from 2.7 mg L-1 to -1, followed by manganese and iron reduction, sulfate reduction, and methanogenesis. In contrast, beneath the basin with predominantly sandy soils (median, 2% silt+clay), aerobic conditions persisted from 2007 through 2009 (dissolved oxygen, 5.0–7.8 mg L-1), resulting in NO3-–N of 1.3 to 3.3 mg L-1 in shallow groundwater. Enrichment of d15N and d18O of NO3- combined with water chemistry data indicates denitrification beneath the clayey basin and relatively conservative NO3- transport beneath the sandy basin. Soil-extractable NO3-–N was significantly lower and the copper-containing nitrite reductase gene density was significantly higher beneath the clayey basin. Differences in moisture retention capacity between fine- and coarse-textured soils resulted in median volumetric gas-phase contents of 0.04 beneath the clayey basin and 0.19 beneath the sandy basin, inhibiting surface/subsurface oxygen exchange beneath the clayey basin. Results can inform development of soil amendments to maintain elevated moisture content in shallow soils of stormwater infiltration basins, which can be incorporated in improved best management practices to mitigate NO3- impacts.

  1. Assessment of the GHG Reduction Potential from Energy Crops Using a Combined LCA and Biogeochemical Process Models: A Review

    PubMed Central

    Jiang, Dong; Hao, Mengmeng; Wang, Qiao; Huang, Yaohuan; Fu, Xinyu

    2014-01-01

    The main purpose for developing biofuel is to reduce GHG (greenhouse gas) emissions, but the comprehensive environmental impact of such fuels is not clear. Life cycle analysis (LCA), as a complete comprehensive analysis method, has been widely used in bioenergy assessment studies. Great efforts have been directed toward establishing an efficient method for comprehensively estimating the greenhouse gas (GHG) emission reduction potential from the large-scale cultivation of energy plants by combining LCA with ecosystem/biogeochemical process models. LCA presents a general framework for evaluating the energy consumption and GHG emission from energy crop planting, yield acquisition, production, product use, and postprocessing. Meanwhile, ecosystem/biogeochemical process models are adopted to simulate the fluxes and storage of energy, water, carbon, and nitrogen in the soil-plant (energy crops) soil continuum. Although clear progress has been made in recent years, some problems still exist in current studies and should be addressed. This paper reviews the state-of-the-art method for estimating GHG emission reduction through developing energy crops and introduces in detail a new approach for assessing GHG emission reduction by combining LCA with biogeochemical process models. The main achievements of this study along with the problems in current studies are described and discussed. PMID:25045736

  2. Quantifying the effects of nutrient loading on dissolved O2 cycling and hypoxia in Chesapeake Bay using a coupled hydrodynamic-biogeochemical model

    NASA Astrophysics Data System (ADS)

    Testa, Jeremy M.; Li, Yun; Lee, Younjoo J.; Li, Ming; Brady, Damian C.; Di Toro, Dominic M.; Kemp, W. Michael; Fitzpatrick, James J.

    2014-11-01

    The Regional Ocean Modeling System (ROMS) was coupled to a biogeochemical model (RCA) to understand the controls on dissolved oxygen (O2) depletion in Chesapeake Bay. The model was calibrated to observational data in the year 2000 and subsequent simulations were performed for a 10-year period, where water-column state variables were validated against observations using multiple error metrics and model-simulated rate processes were compared to available measurements. ROMS-RCA captured observed seasonal and regional dynamics of water-column chlorophyll-a, dissolved O2, and nutrient concentrations, as well as sediment-water nutrient and oxygen fluxes and community respiration rates, but for the year 2000, the model over-predicted surface-water chlorophyll-a and bottom-water O2 in some regions. A series of model experiments were made using the physical regime for the year 2000 to understand ecosystem responses to altered loads of nitrogen and phosphorus and to quantify the spatial and temporal response of Chesapeake Bay to altered nutrient loading. Nutrient loading experiments revealed a non-linear response of hypoxia to nitrogen load, where hypoxic-volume-days maximized at nitrogen loads twice of that observed in the year 2000. O2 levels were more sensitive to nitrogen loads than phosphorus loads, consistent with the preponderance of nitrogen limitation in Chesapeake Bay in late spring and summer months. Expanded hypoxic volumes under higher nitrogen loads were associated with increases in water-column production and respiration in seaward regions of Chesapeake Bay during summer (June to August) months. Analysis of the 10-year model run with realistic hydrodynamics and nutrient loading revealed a similar pattern, emphasizing phytoplankton growth during summer in more nitrogen-limited, lower-Bay regions as a mechanism supporting elevated summer hypoxic volumes. This analysis (1) presents ROMS-RCA as a tool for investigating linked biogeochemical processes in coastal

  3. Fungal production of citric and oxalic acid: importance in metal speciation, physiology and biogeochemical processes.

    PubMed

    Gadd, G M

    1999-01-01

    The production of organic acids by fungi has profound implications for metal speciation, physiology and biogeochemical cycles. Biosynthesis of oxalic acid from glucose occurs by hydrolysis of oxaloacetate to oxalate and acetate catalysed by cytosolic oxaloacetase, whereas on citric acid, oxalate production occurs by means of glyoxylate oxidation. Citric acid is an intermediate in the tricarboxylic acid cycle, with metals greatly influencing biosynthesis: growth limiting concentrations of Mn, Fe and Zn are important for high yields. The metal-complexing properties of these organic acids assist both essential metal and anionic (e.g. phosphate) nutrition of fungi, other microbes and plants, and determine metal speciation and mobility in the environment, including transfer between terrestrial and aquatic habitats, biocorrosion and weathering. Metal solubilization processes are also of potential for metal recovery and reclamation from contaminated solid wastes, soils and low-grade ores. Such 'heterotrophic leaching' can occur by several mechanisms but organic acids occupy a central position in the overall process, supplying both protons and a metal-complexing organic acid anion. Most simple metal oxalates [except those of alkali metals, Fe(III) and Al] are sparingly soluble and precipitate as crystalline or amorphous solids. Calcium oxalate is the most important manifestation of this in the environment and, in a variety of crystalline structures, is ubiquitously associated with free-living, plant symbiotic and pathogenic fungi. The main forms are the monohydrate (whewellite) and the dihydrate (weddelite) and their formation is of significance in biomineralization, since they affect nutritional heterogeneity in soil, especially Ca, P, K and Al cycling. The formation of insoluble toxic metal oxalates, e.g. of Cu, may confer tolerance and ensure survival in contaminated environments. In semi-arid environments, calcium oxalate formation is important in the formation and

  4. Experimental study and steady-state simulation of biogeochemical processes in laboratory columns with aquifer material

    NASA Astrophysics Data System (ADS)

    Amirbahman, Aria; Schönenberger, René; Furrer, Gerhard; Zobrist, Jürg

    2003-07-01

    Packed bed laboratory column experiments were performed to simulate the biogeochemical processes resulting from microbially catalyzed oxidation of organic matter. These included aerobic respiration, denitrification, and Mn(IV), Fe(III) and SO 4 reduction processes. The effects of these reactions on the aqueous- and solid-phase geochemistry of the aquifer material were closely examined. The data were used to model the development of alkalinity and pH along the column. To study the independent development of Fe(III)- and SO 4-reducing environments, two columns were used. One of the columns (column 1) contained small enough concentrations of SO 4 in the influent to render the reduction of this species unimportant to the geochemical processes in the column. The rate of microbially catalyzed reduction of Mn(IV) changed with time as evidenced by the variations in the initial rate of Mn(II) production at the head of the column. The concentration of Mn in both columns was controlled by the solubility of rhodochrosite (MnCO 3(S)). In the column where significant SO 4 reduction took place (column 2), the concentration of dissolved Fe(II) was controlled by the solubility of FeS. In column 1, where SO 4 reduction was not important, maximum dissolved Fe(II) concentrations were controlled by the solubility of siderite (FeCO 3(S)). Comparison of solid-phase and aqueous-phase data suggests that nearly 20% of the produced Fe(II) precipitates as siderite in column 1. The solid-phase analysis also indicates that during the course of experiment, approximately 20% of the total Fe(III) hydroxides and more than 70% of the amorphous Fe(III) hydroxides were reduced by dissimilatory iron reduction. The most important sink for dissolved S(-II) produced by the enzymatic reduction of SO 4 was its direct reaction with solid-phase Fe(III) hydroxides leading initially to the formation of FeS. Compared to this pathway, precipitation as FeS did not constitute an important sink for S(-II) in column

  5. Identifying biogeochemical processes beneath stormwater infiltration ponds in support of a new best management practice for groundwater protection

    USGS Publications Warehouse

    O'Reilly, Andrew M.; Chang, Ni-Bin; Wanielista, Martin P.; Xuan, Zhemin; Schirmer, Mario; Hoehn, Eduard; Vogt, Tobias

    2011-01-01

     When applying a stormwater infiltration pond best management practice (BMP) for protecting the quality of underlying groundwater, a common constituent of concern is nitrate. Two stormwater infiltration ponds, the SO and HT ponds, in central Florida, USA, were monitored. A temporal succession of biogeochemical processes was identified beneath the SO pond, including oxygen reduction, denitrification, manganese and iron reduction, and methanogenesis. In contrast, aerobic conditions persisted beneath the HT pond, resulting in nitrate leaching into groundwater. Biogeochemical differences likely are related to soil textural and hydraulic properties that control surface/subsurface oxygen exchange. A new infiltration BMP was developed and a full-scale application was implemented for the HT pond. Preliminary results indicate reductions in nitrate concentration exceeding 50% in soil water and shallow groundwater beneath the HT pond.

  6. The genetic potential for key biogeochemical processes in Arctic frost flowers and young sea ice revealed by metagenomic analysis.

    PubMed

    Bowman, Jeff S; Berthiaume, Chris T; Armbrust, E Virginia; Deming, Jody W

    2014-08-01

    Newly formed sea ice is a vast and biogeochemically active environment. Recently, we reported an unusual microbial community dominated by members of the Rhizobiales in frost flowers at the surface of Arctic young sea ice based on the presence of 16S gene sequences related to these strains. Here, we use metagenomic analysis of two samples, from a field of frost flowers and the underlying young sea ice, to explore the metabolic potential of this surface ice community. The analysis links genes for key biogeochemical processes to the Rhizobiales, including dimethylsulfide uptake, betaine glycine turnover, and halocarbon production. Nodulation and nitrogen fixation genes characteristic of terrestrial root-nodulating Rhizobiales were generally lacking from these metagenomes. Non-Rhizobiales clades at the ice surface had genes that would enable additional biogeochemical processes, including mercury reduction and dimethylsulfoniopropionate catabolism. Although the ultimate source of the observed microbial community is not known, considerations of the possible role of eolian deposition or transport with particles entrained during ice formation favor a suspended particle source for this microbial community.

  7. Introduction: SIPEX-2: A study of sea-ice physical, biogeochemical and ecosystem processes off East Antarctica during spring 2012

    NASA Astrophysics Data System (ADS)

    Meiners, Klaus M.; Golden, Ken M.; Heil, Petra; Lieser, Jan L.; Massom, Rob; Meyer, Bettina; Williams, Guy D.

    2016-09-01

    This editorial introduces a suite of articles resulting from the second Sea Ice Physics and Ecosystems eXperiment (SIPEX-2) voyage by presenting some background information on the study area and Antarctic sea-ice conditions, and summarising the key findings from the project. Using the Australian icebreaker RV Aurora Australis, SIPEX-2 was conducted in the area between 115-125°E and 62-66°S off East Antarctica during September to November 2012. This region had been sampled during two previous experiments, i.e. ARISE in 2003 (Massom et al., 2006a) and SIPEX in 2007 (Worby et al., 2011a). The 2012 voyage combined traditional and newly developed sampling methods with satellite and other data to measure sea-ice physical properties and processes on large scales, which provided context for biogeochemical and ecological case studies. The specific goals of the SIPEX-2 project were to: (i) measure the spatial variability in sea-ice and snow-cover properties over small- to regional-length scales; (ii) improve understanding of sea-ice kinematic processes; and (iii) advance knowledge of the links between sea-ice physical characteristics, sea-ice biogeochemical cycling and ice-associated food-web dynamics. Our field-based activities were designed to inform modelling approaches and to improve our capability to assess impacts of predicted changes in Antarctic sea ice on Southern Ocean biogeochemical cycles and ecosystem function.

  8. Synchronous DOM and dissolved phosphorus release in riparian soil waters: linking water table fluctuations and biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Gruau, G.; Dupas, R.; Humbert, G.; GU, S.; Jeanneau, L.; Fovet, O.; Denis, M.; Gascuel-Odoux, C.; Jaffrezic, A.; Faucheux, M.; Gilliet, N.; Hamon, Y.; Petitjean, P.

    2015-12-01

    Riparian zones are often viewed as hot spots controlling N, C, P and Fe cycling and export in catchments. Groundwater and surface water flowpaths converge in these zones, and encounter the most reactive, organic-rich, uppermost soil horizons, while being at the same time zones in which soil moisture conditions temporarily fluctuate due to changes in water table depth, which can trigger biogeochemical processes. One well documented example is the process of denitrification which can remove N from riparian groundwater due to the anaerobic reduction of nitrate by soil organic matter. However, the role of riparian zones on the cycling of other nutrients such as dissolved organic matter (DOM) and dissolved P (DP) is much less well documented. In this study, we evaluated this role by using time series of DOM and DP concentrations obtained on the Kervidy-Naizin catchment, a temperate agricultural headwater catchment controlled by shallow groundwater. Over 2 years, groundwater DOM and DP were monitored fortnightly both in the riparian zones and at the bottom of hillslope domains. Two periods of synchronous DOM and DP release were evidenced, the first corresponding to the rise of the water table after the dry summer period, the second being concomitant of the installation of reducing conditions. The reductive dissolution of soil Fe oxyhydroxides initiated by the prolonged soil water saturation caused the second peak, a process which was, however, strongly temporarily and spatially variable at the catchment scale, being dependent on i) the local topographic slope and ii) the annual rainfall amount and frequency. As regard the first peak, it was due either to the flushing by the water table of DOM and DP accumulated during the summer period, or to the release of microbial DOM and DP due to microbial biomass killing by osmotic shock. This study argues for the existence of coupled and complex DOM and DP release processes in the riparian zones of shallow groundwater dominated

  9. Biogeochemical Cycling

    NASA Technical Reports Server (NTRS)

    Bebout, Brad; Fonda, Mark (Technical Monitor)

    2002-01-01

    This lecture will introduce the concept of biogeochemical cycling. The roles of microbes in the cycling of nutrients, production and consumption of trace gases, and mineralization will be briefly introduced.

  10. Using Bathymodiolus tissue stable isotope signatures to infer biogeochemical process at hydrocarbon seeps

    NASA Astrophysics Data System (ADS)

    Feng, D.; Kiel, S.; Qiu, J.; Yang, Q.; Zhou, H.; Peng, Y.; Chen, D.

    2015-12-01

    Here we use stable isotopes of carbon, nitrogen and sulfur in the tissue of two bathymodiolin mussel species with different chemotrophic symbionts (methanotrophs in B. platifrons and sulfide-oxidizers in B. aduloides) to gain insights into the biogeochemical processes at an active site in 1120 m depth on the Formosa Ridge, called Site F. Because mussels with methanotrophic symbionts acquire the isotope signature of the used methane, the average δ13C values of B. platifrons (-70.3‰; n=36) indicates a biogenic methane source at Site F, consistent with the measured carbon isotope signature of methane (-61.1‰ to -58.7‰) sampled 1.5 m above the mussel beds. The only small offset between the δ13C signatures of the ascending methane and the authigenic carbonate at site F (as low as -55.3‰) suggests only minor mixing of the pore water with marine bicarbonate, which in turn may be used as an indicator for advective rather than diffusive seepage at this site. B. aduloides has much higher average δ13C values of -34.4‰ (n=9), indicating inorganic carbon (DIC) dissolved in epibenthic bottom water as its main carbon source. The DIC was apparently marine bicarbonate with a small contribution of 13C-depleted carbon from locally oxidized methane. The δ34S values of the two mussel species indicate that they used two different sulfur sources. B. platifrons (average δ34S = +6.4±2.6‰; n=36) used seawater sulfate mixed with isotopically light re-oxidized sulfide from the sulfate-dependent anaerobic oxidation of methane (AOM), while the sulfur source of B. aduloides (δ34S = -8.0±3.1‰; n=9) was AOM-derived sulfide used by its symbionts. δ15N values differed between the mussels, with B. platifrons having a wider range of on average slightly lower values (mean = +0.5±0.7‰, n=36) than B. aduloides (mean = +1.1±0.0‰). These values are significantly lower than δ15N values of South China Sea deep-sea sediments (+5‰ to +6‰), indicating that the organic nitrogen

  11. Biogeochemical hotspots within forested landscapes: quantifying the functional role of vernal pools in ecosystem processes

    NASA Astrophysics Data System (ADS)

    Capps, K. A.; Rancatti, R.; Calhoun, A.; Hunter, M.

    2013-12-01

    Biogeochemical hotspots are characterized as small areas within a landscape matrix that show comparably high chemical reaction rates relative to surrounding areas. For small, natural features to generate biogeochemical hotspots within a landscape, their contribution to nutrient dynamics must be significant relative to nutrient demand of the surrounding landscape. In northeastern forests in the US, vernal pools are abundant, small features that typically fill in spring with snow melt and precipitation and dry by the end of the summer. Ephemeral flooding alters soil moisture and the depth of the oxic/anoxic boundary in the soil, which may affect leaf-litter decomposition rates and nutrient dynamics including denitrification. Additionally, pool-breeding organisms may influence nutrient dynamics via consumer-driven nutrient remineralization. We studied the effects of vernal pools on rates of leaf-litter decomposition and denitrification in forested habitats in Maine. Our results indicate leaf-litter decomposition and denitrification rates in submerged habitats of vernal pools were greater than in upland forest habitat. Our data also suggest pool-breeding organisms, such as wood frogs, may play an important role in nutrient dynamics within vernal pools. Together, the results suggest vernal pools may function as biogeochemical hotspots within forested landscapes.

  12. Coping Processes of Couples Experiencing Infertility

    ERIC Educational Resources Information Center

    Peterson, Brennan D.; Newton, Christopher R.; Rosen, Karen H.; Schulman, Robert S.

    2006-01-01

    This study explored the coping processes of couples experiencing infertility. Participants included 420 couples referred for advanced reproductive treatments. Couples were divided into groups based on the frequency of their use of eight coping strategies. Findings suggest that coping processes, which are beneficial to individuals, may be…

  13. Potential effects of climate change and variability on watershed biogeochemical processes and water quality in Northeast Asia.

    PubMed

    Park, Ji-Hyung; Duan, Lei; Kim, Bomchul; Mitchell, Myron J; Shibata, Hideaki

    2010-02-01

    An overview is provided of the potential effects of climate change on the watershed biogeochemical processes and surface water quality in mountainous watersheds of Northeast (NE) Asia that provide drinking water supplies for large populations. We address major 'local' issues with the case studies conducted at three watersheds along a latitudinal gradient going from northern Japan through the central Korean Peninsula and ending in southern China. Winter snow regimes and ground snowpack dynamics play a crucial role in many ecological and biogeochemical processes in the mountainous watersheds across northern Japan. A warmer winter with less snowfall, as has been projected for northern Japan, will alter the accumulation and melting of snowpacks and affect hydro-biogeochemical processes linking soil processes to surface water quality. Soils on steep hillslopes and rich in base cations have been shown to have distinct patterns in buffering acidic inputs during snowmelt. Alteration of soil microbial processes in response to more frequent freeze-thaw cycles under thinner snowpacks may increase nutrient leaching to stream waters. The amount and intensity of summer monsoon rainfalls have been increasing in Korea over recent decades. More frequent extreme rainfall events have resulted in large watershed export of sediments and nutrients from agricultural lands on steep hillslopes converted from forests. Surface water siltation caused by terrestrial export of sediments from these steep hillslopes is emerging as a new challenge for water quality management due to detrimental effects on water quality. Climatic predictions in upcoming decades for southern China include lower precipitation with large year-to-year variations. The results from a four-year intensive study at a forested watershed in Chongquing province showed that acidity and the concentrations of sulfate and nitrate in soil and surface waters were generally lower in the years with lower precipitation, suggesting year

  14. Potential effects of climate change and variability on watershed biogeochemical processes and water quality in Northeast Asia.

    PubMed

    Park, Ji-Hyung; Duan, Lei; Kim, Bomchul; Mitchell, Myron J; Shibata, Hideaki

    2010-02-01

    An overview is provided of the potential effects of climate change on the watershed biogeochemical processes and surface water quality in mountainous watersheds of Northeast (NE) Asia that provide drinking water supplies for large populations. We address major 'local' issues with the case studies conducted at three watersheds along a latitudinal gradient going from northern Japan through the central Korean Peninsula and ending in southern China. Winter snow regimes and ground snowpack dynamics play a crucial role in many ecological and biogeochemical processes in the mountainous watersheds across northern Japan. A warmer winter with less snowfall, as has been projected for northern Japan, will alter the accumulation and melting of snowpacks and affect hydro-biogeochemical processes linking soil processes to surface water quality. Soils on steep hillslopes and rich in base cations have been shown to have distinct patterns in buffering acidic inputs during snowmelt. Alteration of soil microbial processes in response to more frequent freeze-thaw cycles under thinner snowpacks may increase nutrient leaching to stream waters. The amount and intensity of summer monsoon rainfalls have been increasing in Korea over recent decades. More frequent extreme rainfall events have resulted in large watershed export of sediments and nutrients from agricultural lands on steep hillslopes converted from forests. Surface water siltation caused by terrestrial export of sediments from these steep hillslopes is emerging as a new challenge for water quality management due to detrimental effects on water quality. Climatic predictions in upcoming decades for southern China include lower precipitation with large year-to-year variations. The results from a four-year intensive study at a forested watershed in Chongquing province showed that acidity and the concentrations of sulfate and nitrate in soil and surface waters were generally lower in the years with lower precipitation, suggesting year

  15. In situ response of bay productivity to nutrient loading from a small tributary: The Delaware Bay-Murderkill Estuary tidally-coupled biogeochemical reactor

    NASA Astrophysics Data System (ADS)

    Voynova, Yoana G.; Lebaron, Karine C.; Barnes, Rebecca T.; Ullman, William J.

    2015-07-01

    A small, turbid and nutrient-rich tributary, the Murderkill Estuary, and a large estuarine ecosystem, the Delaware Bay, are tightly linked and form an efficient, tidally-coupled biogeochemical reactor during the summer. Nitrate loading from the Murderkill Estuary generates an instantaneous increase in biological oxygen production in the adjacent Delaware Bay. We are able to capture this primary production response with continuous hourly measurements of dissolved oxygen, chlorophyll, and nitrate. The nitrate influxes from the Murderkill support primary production rates in the Delaware Bay margins that are twice as high as the average production rates measured in the central Bay regions. This elevates chlorophyll in the Bay margins in the summer and fuels metabolism. Tidal transport of the newly produced autochthonous chlorophyll particles from the Bay into the Estuary could also provide a source of labile material to the marshes surrounding the Murderkill, thus perhaps fueling marsh respiration. As a consequence of the tidal coupling between Delaware Bay and the Murderkill Estuary, ecosystem productivity and metabolism in the Bay and Estuary are linked, generating an ecosystem feedback mechanism. Storms modulate this tidally-coupled biogeochemical reactor, by generating significant nitrate and salinity changes. Depending on their magnitude and duration, storms induce large phytoplankton blooms in the Delaware Bay. Such large phytoplankton blooms may occur more often with climate change, since century-long discharge records document an increase in storm frequency.

  16. Afforestation alters the composition of functional genes in soil and biogeochemical processes in South American grasslands

    SciTech Connect

    Berthrong, Sean T; Schadt, Christopher Warren; Pineiro, Gervasio; Jackson, Robert B

    2009-01-01

    Soil microbes are highly diverse and control most soil biogeochemical reactions. We examined how microbial functional genes and biogeochemical pools responded to the altered chemical inputs accompanying land use change. We examined paired native grasslands and adjacent Eucalyptus plantations (previously grassland) in Uruguay, a region that lacked forests before European settlement. Along with measurements of soil carbon, nitrogen, and bacterial diversity, we analyzed functional genes using the GeoChip 2.0 microarray, which simultaneously quantified several thousand genes involved in soil carbon and nitrogen cycling. Plantations and grassland differed significantly in functional gene profiles, bacterial diversity, and biogeochemical pool sizes. Most grassland profiles were similar, but plantation profiles generally differed from those of grasslands due to differences in functional gene abundance across diverse taxa. Eucalypts decreased ammonification and N fixation functional genes by 11% and 7.9% (P < 0.01), which correlated with decreased microbial biomass N and more NH{sub 4}{sup +} in plantation soils. Chitinase abundance decreased 7.8% in plantations compared to levels in grassland (P = 0.017), and C polymer-degrading genes decreased by 1.5% overall (P < 0.05), which likely contributed to 54% (P < 0.05) more C in undecomposed extractable soil pools and 27% less microbial C (P < 0.01) in plantation soils. In general, afforestation altered the abundance of many microbial functional genes, corresponding with changes in soil biogeochemistry, in part through altered abundance of overall functional gene types rather than simply through changes in specific taxa. Such changes in microbial functional genes correspond with altered C and N storage and have implications for long-term productivity in these soils.

  17. Urban pollution of sediments: Impact on the physiology and burrowing activity of tubificid worms and consequences on biogeochemical processes.

    PubMed

    Pigneret, M; Mermillod-Blondin, F; Volatier, L; Romestaing, C; Maire, E; Adrien, J; Guillard, L; Roussel, D; Hervant, F

    2016-10-15

    In urban areas, infiltration basins are designed to manage stormwater runoff from impervious surfaces and allow the settling of associated pollutants. The sedimentary layer deposited at the surface of these structures is highly organic and multicontaminated (mainly heavy metals and hydrocarbons). Only few aquatic species are able to maintain permanent populations in such an extreme environment, including the oligochaete Limnodrilus hoffmeisteri. Nevertheless, the impact of urban pollutants on these organisms and the resulting influence on infiltration basin functioning remain poorly studied. Thus, the aim of this study was to determine how polluted sediments could impact the survival, the physiology and the bioturbation activity of L. hoffmeisteri and thereby modify biogeochemical processes occurring at the water-sediment interface. To this end, we conducted laboratory incubations of worms, in polluted sediments from infiltration basins or slightly polluted sediments from a stream. Analyses were performed to evaluate physiological state and burrowing activity (X-ray micro-tomography) of worms and their influences on biogeochemical processes (nutrient fluxes, CO2 and CH4 degassing rates) during 30-day long experiments. Our results showed that worms exhibited physiological responses to cope with high pollution levels, including a strong ability to withstand the oxidative stress linked to contamination with heavy metals. We also showed that the presence of urban pollutants significantly increased the burrowing activity of L. hoffmeisteri, demonstrating the sensitivity and the relevance of such a behavioural response as biomarker of sediment toxicity. In addition, we showed that X-ray micro-tomography was an adequate technique for accurate and non-invasive three-dimensional investigations of biogenic structures formed by bioturbators. The presence of worms induced stimulations of nutrient fluxes and organic matter recycling (between +100% and 200% of CO2 degassing rate

  18. Urban pollution of sediments: Impact on the physiology and burrowing activity of tubificid worms and consequences on biogeochemical processes.

    PubMed

    Pigneret, M; Mermillod-Blondin, F; Volatier, L; Romestaing, C; Maire, E; Adrien, J; Guillard, L; Roussel, D; Hervant, F

    2016-10-15

    In urban areas, infiltration basins are designed to manage stormwater runoff from impervious surfaces and allow the settling of associated pollutants. The sedimentary layer deposited at the surface of these structures is highly organic and multicontaminated (mainly heavy metals and hydrocarbons). Only few aquatic species are able to maintain permanent populations in such an extreme environment, including the oligochaete Limnodrilus hoffmeisteri. Nevertheless, the impact of urban pollutants on these organisms and the resulting influence on infiltration basin functioning remain poorly studied. Thus, the aim of this study was to determine how polluted sediments could impact the survival, the physiology and the bioturbation activity of L. hoffmeisteri and thereby modify biogeochemical processes occurring at the water-sediment interface. To this end, we conducted laboratory incubations of worms, in polluted sediments from infiltration basins or slightly polluted sediments from a stream. Analyses were performed to evaluate physiological state and burrowing activity (X-ray micro-tomography) of worms and their influences on biogeochemical processes (nutrient fluxes, CO2 and CH4 degassing rates) during 30-day long experiments. Our results showed that worms exhibited physiological responses to cope with high pollution levels, including a strong ability to withstand the oxidative stress linked to contamination with heavy metals. We also showed that the presence of urban pollutants significantly increased the burrowing activity of L. hoffmeisteri, demonstrating the sensitivity and the relevance of such a behavioural response as biomarker of sediment toxicity. In addition, we showed that X-ray micro-tomography was an adequate technique for accurate and non-invasive three-dimensional investigations of biogenic structures formed by bioturbators. The presence of worms induced stimulations of nutrient fluxes and organic matter recycling (between +100% and 200% of CO2 degassing rate

  19. Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

    PubMed Central

    Anantharaman, Karthik; Brown, Christopher T.; Hug, Laura A.; Sharon, Itai; Castelle, Cindy J.; Probst, Alexander J.; Thomas, Brian C.; Singh, Andrea; Wilkins, Michael J.; Karaoz, Ulas; Brodie, Eoin L.; Williams, Kenneth H.; Hubbard, Susan S.; Banfield, Jillian F.

    2016-01-01

    The subterranean world hosts up to one-fifth of all biomass, including microbial communities that drive transformations central to Earth's biogeochemical cycles. However, little is known about how complex microbial communities in such environments are structured, and how inter-organism interactions shape ecosystem function. Here we apply terabase-scale cultivation-independent metagenomics to aquifer sediments and groundwater, and reconstruct 2,540 draft-quality, near-complete and complete strain-resolved genomes that represent the majority of known bacterial phyla as well as 47 newly discovered phylum-level lineages. Metabolic analyses spanning this vast phylogenetic diversity and representing up to 36% of organisms detected in the system are used to document the distribution of pathways in coexisting organisms. Consistent with prior findings indicating metabolic handoffs in simple consortia, we find that few organisms within the community can conduct multiple sequential redox transformations. As environmental conditions change, different assemblages of organisms are selected for, altering linkages among the major biogeochemical cycles. PMID:27774985

  20. Biogeochemical processes governing exposure and uptake of organic pollutant compounds in aquatic organisms

    SciTech Connect

    Farrington, J.W. )

    1991-01-01

    This paper reviews current knowledge of biogeochemical cycles of pollutant organic chemicals in aquatic ecosystems with a focus on coastal ecosystems. There is a bias toward discussing chemical and geochemical aspects of biogeochemical cycles and an emphasis on hydrophobic organic compounds such as polynuclear aromatic hydrocarbons, polychlorinated biphenyls, and chlorinated organic compounds used as pesticides. The complexity of mixtures of pollutant organic compounds, their various modes of entering ecosystems, and their physical chemical forms are discussed. Important factors that influence bioavailability and disposition (e.g., organism-water partitioning, uptake via food, food web transfer) are reviewed. These factors included solubilities of chemicals; partitioning of chemicals between solid surfaces, colloids, and soluble phases; variables rates of sorption, desorption; and physiological status of organism. It appears that more emphasis on considering food as a source of uptake and bioaccumulation is important in benthic and epibenthic ecosystems when sediment-associated pollutants are a significant source of input to an aquatic ecosystem. Progress with mathematical models for exposure and uptake of contaminant chemicals is discussed briefly.

  1. Biogeochemical processes in the continental slope of Bay of Bengal: I. Bacterial solubilization of inorganic phosphate.

    PubMed

    Das, Surajit; Lyla, P S; Khan, S Ajmal

    2007-03-01

    Microorganisms play a vital role in the biogeochemical cycles of various marine environments, but studies on occurrence and distribution of such bacteria in the marine environment from India are meager. We studied the phosphate solubilizing property of bacteria from the deep sea sediment of Bay of Bengal, India, to understand their role in phosphorous cycle (and thereby the benthic productivity of the deep sea environment). Sediment samples were obtained from 33 stations between 10 degrees 36'N-20 degrees 01' N and 79 degrees 59' E-87 degrees 30' E along 11 transects at 3 different depths i.e. ca. 200 m, 500 m, 1000 m in each transect. Total heterotrophic bacterial (THB) counts ranged from 0.42 to 37.38 x 10(4) CFU g(-1) dry sediment weight. Of the isolates tested, 7.57% showed the phosphate solubilizing property. The phosphate solubilizing bacterial genera were Pseudomonas, Bacillus, Vibrio, Alcaligenes, Micrococcus, Corynebacterium and Flavobacterium. These strains are good solubilizers of phosphates which ultimately may play a major role in the biogeochemical cycle and the benthic productivity of the Exclusive Economic Zone (EEZ) of Bay of Bengal, because this enzyme is important for the slow, but steady regeneration of phosphate and organic carbon in the deep sea. PMID:18457109

  2. Biogeochemical processes governing exposure and uptake of organic pollutant compounds in aquatic organisms.

    PubMed Central

    Farrington, J W

    1991-01-01

    This paper reviews current knowledge of biogeochemical cycles of pollutant organic chemicals in aquatic ecosystems with a focus on coastal ecosystems. There is a bias toward discussing chemical and geochemical aspects of biogeochemical cycles and an emphasis on hydrophobic organic compounds such as polynuclear aromatic hydrocarbons, polychlorinated biphenyls, and chlorinated organic compounds used as pesticides. The complexity of mixtures of pollutant organic compounds, their various modes of entering ecosystems, and their physical chemical forms are discussed. Important factors that influence bioavailability and disposition (e.g., organism-water partitioning, uptake via food, food web transfer) are reviewed. These factors include solubilities of chemicals; partitioning of chemicals between solid surfaces, colloids, and soluble phases; variables rates of sorption, desorption; and physiological status of organism. It appears that more emphasis on considering food as a source of uptake and bioaccumulation is important in benthic and epibenthic ecosystems when sediment-associated pollutants are a significant source of input to an aquatic ecosystem. Progress with mathematical models for exposure and uptake of contaminant chemicals is discussed briefly. PMID:1904812

  3. Biogeochemical processes in the continental slope of Bay of Bengal: I. Bacterial solubilization of inorganic phosphate.

    PubMed

    Das, Surajit; Lyla, P S; Khan, S Ajmal

    2007-03-01

    Microorganisms play a vital role in the biogeochemical cycles of various marine environments, but studies on occurrence and distribution of such bacteria in the marine environment from India are meager. We studied the phosphate solubilizing property of bacteria from the deep sea sediment of Bay of Bengal, India, to understand their role in phosphorous cycle (and thereby the benthic productivity of the deep sea environment). Sediment samples were obtained from 33 stations between 10 degrees 36'N-20 degrees 01' N and 79 degrees 59' E-87 degrees 30' E along 11 transects at 3 different depths i.e. ca. 200 m, 500 m, 1000 m in each transect. Total heterotrophic bacterial (THB) counts ranged from 0.42 to 37.38 x 10(4) CFU g(-1) dry sediment weight. Of the isolates tested, 7.57% showed the phosphate solubilizing property. The phosphate solubilizing bacterial genera were Pseudomonas, Bacillus, Vibrio, Alcaligenes, Micrococcus, Corynebacterium and Flavobacterium. These strains are good solubilizers of phosphates which ultimately may play a major role in the biogeochemical cycle and the benthic productivity of the Exclusive Economic Zone (EEZ) of Bay of Bengal, because this enzyme is important for the slow, but steady regeneration of phosphate and organic carbon in the deep sea.

  4. Spatial patterns in soil biogeochemical process rates along a Louisiana wetland salinity gradient in the Barataria Bay estuarine system

    NASA Astrophysics Data System (ADS)

    Roberts, B. J.; Rich, M. W.; Sullivan, H. L.; Bledsoe, R.; Dawson, M.; Donnelly, B.; Marton, J. M.

    2014-12-01

    Louisiana has the highest rates of coastal wetland loss in the United States. In addition to being lost, Louisiana wetlands experience numerous other environmental stressors including changes in salinity regime (both increases from salt water intrusion and decreases from the creation of river diversions) and climate change induced changes in vegetation (e.g. the northward expansion of Avicennia germinans (black mangrove) into salt marshes). In this study, we examined how these changes might influence biogeochemical process rates important in regulating carbon balance and the cycling, retention, and removal of nutrients in Louisiana wetlands. Specifically, we measured net soil greenhouse gas fluxes and collected cores for the determination of rates of greenhouse gas production, denitrification potential, nitrification potential, iron reduction, and phosphorus sorption from surface (0-5cm) and subsurface (10-15cm) depths for three plots in each of 4 sites along the salinity gradient: a freshwater marsh site, a brackish (7 ppt) marsh site, a salt marsh (17 ppt), and a Avicennia germinans stand (17 ppt; adjacent to salt marsh site) in the Barataria Bay estuarine system. Most biogeochemical processes displayed similar spatial patterns with salt marsh rates being lower than rates in freshwater and/or brackish marsh sites and not having significantly different rates than in Avicennia germinans stands. Rates in surface soils were generally higher than in subsurface soils. These patterns were generally consistent with spatial patterns in soil properties with soil water content, organic matter quantity and quality, and extractable nutrients generally being higher in freshwater and brackish marsh sites than salt marsh and Avicennia germinans sites, especially in surface soils. These spatial patterns suggest that the ability of coastal wetlands to retain and remove nutrients might change significantly in response to future climate changes in the region and that these

  5. Biogeochemical control of the coupled CO2-O 2 system of the Baltic Sea: a review of the results of Baltic-C.

    PubMed

    Omstedt, Anders; Humborg, Christoph; Pempkowiak, Janusz; Perttilä, Matti; Rutgersson, Anna; Schneider, Bernd; Smith, Benjamin

    2014-02-01

    Past, present, and possible future changes in the Baltic Sea acid-base and oxygen balances were studied using different numerical experiments and a catchment-sea model system in several scenarios including business as usual, medium scenario, and the Baltic Sea Action Plan. New CO2 partial pressure data provided guidance for improving the marine biogeochemical model. Continuous CO2 and nutrient measurements with high temporal resolution helped disentangle the biogeochemical processes. These data and modeling indicate that traditional understandings of the nutrient availability-organic matter production relationship do not necessarily apply to the Baltic Sea. Modeling indicates that increased nutrient loads will not inhibit future Baltic Sea acidification; instead, increased mineralization and biological production will amplify the seasonal surface pH cycle. The direction and magnitude of future pH changes are mainly controlled by atmospheric CO2 concentration. Apart from decreasing pH, we project a decreasing calcium carbonate saturation state and increasing hypoxic area.

  6. Designing and interpreting laboratory experiments for hydrodynamical, biogeochemical, and ecological processes in rivers (Invited)

    NASA Astrophysics Data System (ADS)

    Packman, A. I.

    2009-12-01

    In this talk, I will articulate a general philosophy for the design of laboratory experiments for fluvial processes; discuss important concepts of scaling, scale limitation, and process coupling that should be considered in designing experiments and interpreting experimental results; and provide concrete examples of how this approach can be used to probe river mechanics, sedimentary biogeochemistry, benthic/hyporheic ecology, and downstream migration of reactive solutes and particles. It is challenging to design laboratory experiments to probe fluvial processes because river systems show extremely strong interactions over a wide range of spatial and temporal scales. Biological and ecological processes are especially difficult to study in the laboratory because they are influenced by a wide range of system conditions, and we do not currently have a strong theoretical basis to quantitatively generalize experimental observations. Further, many seemingly basic and invariant chemical and biological properties - such as sorption coefficients, reaction rate constants, respiration rates, and nutrient uptake rates - change over space and time in fluvial systems because these environments are highly dynamic over a wide range of temporal scales, show strong longitudinal connectivity, and have strong heterogeneity in the surrounding and underlying sediments. Laboratory studies can be used to systematically investigate these effects, thereby providing considerable insight into generally important controlling mechanisms, with the caveat that larger-scale drivers and process interactions must be considered when translating the results to the field. Laboratory experiments can best be targeted to discriminate alternate hypotheses regarding important governing processes, and to independently test the effects of each important variable. Once this information is obtained, it should be codified in the form of quantitative, theoretical relationships that can be subsequently evaluated in

  7. Earthquake-Ionosphere Coupling Processes

    NASA Astrophysics Data System (ADS)

    Kamogawa, Masashi

    an ionospheric phenomenon attributed to tsunami, termed tsunamigenic ionospheric hole (TIH) [Kakinami and Kamogwa et al., GRL, 2012]. After the TEC depression accompanying a monoperiodic variation with approximately 4-minute period as an acoustic resonance between the ionosphere and the solid earth, the TIH gradually recovered. In addition, geomagnetic pulsations with the periods of 150, 180 and 210 seconds were observed on the ground in Japan approximately 5 minutes after the mainshock. Since the variation with the period of 180 seconds was simultaneously detected at the magnetic conjugate of points of Japan, namely Australia, field aligned currents along the magnetic field line were excited. The field aligned currents might be excited due to E and F region dynamo current caused by acoustic waves originating from the tsunami. This result implies that a large earthquake generates seismogenic field aligned currents. Furthermore, monoperiodical geomagnetic oscillation pointing to the epicenter of which velocity corresponds to Rayleigh waves occurs. This may occur due to seismogenic arc-current in E region. Removing such magnetic oscillations from the observed data, clear tsunami dynamo effect was found. This result implies that a large EQ generates seismogenic field aligned currents, seismogenic arc-current and tsunami dynamo current which disturb geomagnetic field. Thus, we found the complex coupling process between a large EQ and an ionosphere from the results of Tohoku EQ.

  8. Ozone and Nitrogen Deposition as Modifiers of Biogeochemical Fluxes and Processes in California Forests

    NASA Astrophysics Data System (ADS)

    Fenn, M. E.

    2011-12-01

    The combined effects of ozone and N deposition results in major perturbations of C and N cycling in forests of southern and central California. Increased shoot:root ratios of the major trees species, N-stimulation of aboveground growth, and premature foliar abscission result in greater aboveground C and N pools. Fire suppression exacerbates these perturbations and provides the opportunity for chronic N deposition to further increase the stand densification problem. Long-term litter decomposition rates are retarded by N enrichment which contributes further to litter accumulation in the forest floor. Stage 3 of N saturation in California mixed conifer forests occurs as chronic N deposition, in conjunction with co-occurring ozone effects, decreases fine root biomass, interferes with stomatal control, and increases the susceptibility of ponderosa pine trees to drought stress and bark beetle attack, leading to increased stand mortality. Hot moments of N transfers from canopy to the forest floor occur during precipitation events that follow long dry periods, but particularly during fog events. During initial soil wet up, pulses of NO and N2O emissions from the forest floor occur. Streamwater losses of nitrate are highest following storms preceded by dry periods, but also during peak runoff, typically in February and March. However, major losses of accumulated N occur during and after fire events. However, ecosystem N budgets, biogeochemical modeling studies and experimental burns in N-saturated chaparral catchments in southern California demonstrate that symptoms of N excess are not easily reversed by N release in and following fire. Even with decreased N deposition, momentum for elevated N losses from California forests would likely continue, driven by actively nitrifying soils and increased N content of litter and soil organic matter. Initial studies show that during peak runoff, as much as 20-40% of runoff nitrate in some catchments is throughput of unassimilated

  9. Regional scale hydrological and biogeochemical processes controlling high biodiversity of a groundwater fed alkaline fen

    NASA Astrophysics Data System (ADS)

    van der Zee, Sjoerd E. A. T. M.; (D. G.) Cirkel, Gijsbert; (J. P. M) witte, Flip

    2014-05-01

    The high floral biodiversity of groundwater fed fens and mesotrophic grasslands depends on the different chemical signatures of the shallow rainwater fed topsoil water and the slightly deeper geochemically affected groundwater. The relatively abrupt gradients between these two layers of groundwater enable the close proximity of plants that require quite different site factors and have different rooting depths. However, sulphur inflow into such botanically interesting areas is generally perceived as a major threat to biodiversity. Although in Europe atmospheric deposition of sulphur has decreased considerably over the last decades, groundwater pollution by sulphate may still continue due to pyrite oxidation in soil as a result of excessive fertilisation. Inflowing groundwater rich in sulphate can change biogeochemical cycling in nutrient-poor wetland ecosystems because of 'so called' internal eutrophication as well as the accumulation of dissolved sulphide, which is phytotoxic. Complementary to conventions, we propose that upwelling sulphate rich groundwater may, in fact, promote the conservation of rare and threatened alkaline fens: excessive fertilisation and pyrite oxidation also produces acidity, which invokes calcite dissolution, and increased alkalinity and hardness of the inflowing groundwater. For a very species-rich wetland nature reserve, we show that sulphate is reduced and effectively precipitated as iron sulphides, when this calcareous and sulphate rich groundwater flows upward through the organic soil of the investigated nature reserve. Also, we show that sulphate reduction occurs simultaneously with an increase in alkalinity production, which in our case results in active calcite precipitation in the soil. In spite of the occurring sulphate reduction, we found no evidence for internal eutrophication. Extremely low phosphorous concentration in the pore water could be attributed to a high C:P ratio of soil organic matter and co-precipitation with

  10. Modeling biogeochemical processes in subterranean estuaries: Effect of flow dynamics and redox conditions on submarine groundwater discharge of nutrients

    NASA Astrophysics Data System (ADS)

    Spiteri, Claudette; Slomp, Caroline P.; Tuncay, Kagan; Meile, Christof

    2008-02-01

    A two-dimensional density-dependent reactive transport model, which couples groundwater flow and biogeochemical reactions, is used to investigate the fate of nutrients (NO3-, NH4+, and PO4) in idealized subterranean estuaries representing four end-members of oxic/anoxic aquifer and seawater redox conditions. Results from the simplified model representations show that the prevalent flow characteristics and redox conditions in the freshwater-seawater mixing zone determine the extent of nutrient removal and the input of nitrogen and phosphorus to coastal waters. At low to moderate groundwater velocities, simultaneous nitrification and denitrification can lead to a reversal in the depth of freshwater NO3- and NH4+-PO4 plumes, compared to their original positions at the landward source. Model results suggest that autotrophic denitrification pathways with Fe2+ or FeS2 may provide an important, often overlooked link between nitrogen and phosphorus biogeochemistry through the precipitation of iron oxides and subsequent binding of phosphorus. Simulations also highlight that deviations of nutrient data from conservative mixing curves do not necessarily indicate nutrient removal.

  11. Stormwater sediment and bioturbation influences on hydraulic functioning, biogeochemical processes, and pollutant dynamics in laboratory infiltration systems.

    PubMed

    Nogaro, Geraldine; Mermillod-Blondin, Florian

    2009-05-15

    Stormwater sediments that accumulate at the surface of infiltration basins reduce infiltration efficiencies by physical clogging and produce anoxification in the subsurface. The present study aimed to quantify the influence of stormwater sediment origin (urban vs industrial catchments) and the occurrence of bioturbators (tubificid worms) on the hydraulic functioning, aerobic/anaerobic processes, and pollutant dynamics in stormwater infiltration systems. In laboratory sediment columns, effects of stormwater sediments and tubificids were examined on hydraulic conductivity, microbial processes, and pollutant releases. Significant differences in physical (particle size distribution) and chemical characteristics betoveen the two stormwater sediments led to distinct effects of these sediments on hydraulic and biogeochemical processes. Bioturbation by tubificid worms could increase the hydraulic conductivity in stormwater infiltration columns, but this effect depended on the characteristics of the stormwater sediments. Bioturbation-driven increases in hydraulic conductivity stimulated aerobic microbial processes and enhanced vertical fluxes of pollutants in the sediment layer. Our results showed that control of hydraulic functioning by stormwater sediment characteristics and/ or biological activities (such as bioturbation) determined the dynamics of organic matter and pollutants in stormwater infiltration devices.

  12. Biogeochemical and hydrologic processes controlling mercury cycling in Great Salt Lake, Utah

    NASA Astrophysics Data System (ADS)

    Naftz, D.; Kenney, T.; Angeroth, C.; Waddell, B.; Darnall, N.; Perschon, C.; Johnson, W. P.

    2006-12-01

    Great Salt Lake (GSL), in the Western United States, is a terminal lake with a highly variable surface area that can exceed 5,100 km2. The open water and adjacent wetlands of the GSL ecosystem support millions of migratory waterfowl and shorebirds from throughout the Western Hemisphere, as well as a brine shrimp industry with annual revenues exceeding 70 million dollars. Despite the ecologic and economic significance of GSL, little is known about the biogeochemical cycling of mercury (Hg) and no water-quality standards currently exist for this system. Whole water samples collected since 2000 were determined to contain elevated concentrations of total Hg (100 ng/L) and methyl Hg (33 ng/L). The elevated levels of methyl Hg are likely the result of high rates of SO4 reduction and associated Hg methylation in persistently anoxic areas of the lake at depths greater than 6.5 m below the water surface. Hydroacoustic equipment deployed in this anoxic layer indicates a "conveyor belt" flow system that can distribute methyl Hg in a predominantly southerly direction throughout the southern half of GSL (fig. 1, URL: http://users.o2wire.com/dnaftz/Dave/AGU-abs-figs- AUG06.pdf). Periodic and sustained wind events on GSL may result in transport of the methyl Hg-rich anoxic water and bottom sediments into the oxic and biologically active regions. Sediment traps positioned above the anoxic brine interface have captured up to 6 mm of bottom sediment during cumulative wind-driven resuspension events (fig. 2, URL:http://users.o2wire.com/dnaftz/Dave/AGU-abs-figs-AUG06.pdf). Vertical velocity data collected with hydroacoustic equipment indicates upward flow > 1.5 cm/sec during transient wind events (fig. 3, URL:http://users.o2wire.com/dnaftz/Dave/AGU-abs-figs-AUG06.pdf). Transport of methyl Hg into the oxic regions of GSL is supported by biota samples. The median Hg concentration (wet weight) in brine shrimp increased seasonally from the spring to fall time period and is likely a

  13. Effect of sulfidogenesis cycling on the biogeochemical process in arsenic-enriched aquifers in the Lanyang Plain of Taiwan: Evidence from a sulfur isotope study

    NASA Astrophysics Data System (ADS)

    Kao, Yu-Hsuan; Liu, Chen-Wuing; Wang, Pei-Ling; Liao, Chung-Min

    2015-09-01

    This study evaluated the biogeochemical interactions between arsenic (As) and sulfur (S) in groundwater to understand the natural and anthropogenic influences of S redox processes on As mobilization in the Lanyang Plain, Taiwan. Cl- and the sulfate isotopic composition (δ34S[SO4]) were selected as conservative tracers. River water and saline seawater were considered as end members in the binary mixing model. Thirty-two groundwater samples were divided into four types of groundwater (I, pyrite-oxidation; II, iron- and sulfate-reducing; III, sulfate-reducing; and IV, anthropogenic and others). The binary mixing model coupled with discriminant analysis was applied to yield a classification with 97% correctness, indicating that the DO/ORP values and δ34S[SO4] and Fe2+ concentrations are effective redox-sensitive indicators. Type I groundwater is mostly located in a mountainous recharge area where pyrite oxidation is the major geochemical process. A high 18O enrichment factor (ε[SO4-H2O]) and high 34S enrichment factor (ε34S[FeS2-SO4]) indicate that disproportionation and dissimilatory sulfate reduction are both involved in Type II and Type III groundwater. The process of bacterial sulfate reduction may coprecipitate and sequester As, a mechanism that is unlikely to occur in Type II groundwater. The presence of high As and Fe2+ concentrations and enriched δ34S[SO4] in Type II groundwater suggest that biogeochemical reactions occurred under anaerobic conditions. The reductive dissolution of As-bearing Fe oxyhydroxides together with microbial disproportionation of sulfur explains the substantial correlations among the high As concentration and enriched δ34S[SO4] and Fe2+ concentrations in the iron- and sulfate-reducing zone (Type II). The As concentration in Type III groundwater (sulfate-reducing) is lower than that in Type II groundwater because of bacterial sulfate reduction and coprecipitation with As. Furthermore, the dissolution of sulfate minerals is not the

  14. Coupled in situ Ammonium and Nitrate analyses of a tidally dominated estuary: New developments from the Elkhorn Slough Land/Ocean Biogeochemical Observatory network

    NASA Astrophysics Data System (ADS)

    Gibson, P. J.; Plant, J.; Johnson, K. S.

    2012-12-01

    For nearly nine years the Elkhorn Slough Land/Ocean Biogeochemical Observatory (LOBO) network of moorings has been delivering freely available hourly data to the web in near real time. Each mooring hosts a suite of instruments including an ISUS nitrate sensor. In addition to providing valuable information on ecosystem scale processes, the moorings serve as ideal test platforms for novel in situ chemical sensors & analyzers developed by the Monterey Bay Aquarium Research Institute. The recent addition of a newly developed in situ NH4+ analyzer, the DigiScan-II, has provided additional insights into N cycling mechanisms within the slough. The analysis method estimates NH4+ concentration via base conversion to NH3 gas and diffusion across a membrane into an acid carrier stream with subsequent conductivity detection. Although this new NH4+ analyzer is reagent based, it was developed to be relatively cheap, robust, and configurable for a range of deployment options and requires minimal, infrequent maintenance that is ultimately governed by battery life. The fundamental DigiScan-II platform can also be used for other analyses of interest, such as PO4 or CT (total inorganic carbon), by swapping the necessary reagents and components and by making minor code modifications. For deployment in Elkhorn Slough, the NH4+ DigiScan-II was configured for mid-scale concentration detection with a linear calibration range of <0.2 to >30.0 μM NH4+. The flux of different forms of bioavailable DIN through the system is driven by runoff inputs, tidal exchange, and biological processing. Large inputs of NO3- are sourced from the agriculturally influenced Old Salinas River (OSR), which enters the Slough near the estuary mouth and confluence with Monterey Bay. Rising ocean tides force this eutrophied water mass up into the slough where it is accessed by various biological communities during the course of the tidal period. Mass balance estimates suggest there is an imbalance between the

  15. Are Changes in Biogeochemical or Hydrologic Processes Responsible for Increasing DOC Concentrations in Headwater Streams of Northeastern North America?

    NASA Astrophysics Data System (ADS)

    Burns, D. A.; Murdoch, P. S.

    2005-12-01

    The recent recognition of widespread and significant upward trends in dissolved organic carbon (DOC) concentrations in surface waters of northeastern North America and Europe has stimulated research to understand the cause of these trends. Several factors have been offered to explain these DOC trends including climate warming, chronic atmospheric nitrogen deposition, decreasing atmospheric sulfur deposition, and increasing surface water pH. Changes in these factors have acted to either increase the solubility of DOC or increase the rates of biogeochemical processes that generate labile carbon in the soil. Additionally, it is well known that rain events and snowmelt increase DOC concentrations in many surface waters through flushing along shallow flow paths where most labile carbon is stored. Changes in hydrologic flushing rates have generally not been explored as a possible explanation of these widely reported upward trends in DOC concentrations. Biscuit Brook, a 9.9 km2 catchment in the Catskill Mountains of New York has shown a significant increasing trend in DOC concentrations since 1992, consistent with other streams in this region. Stream chemistry has been monitored at Biscuit Brook on a weekly basis supplemented with event samples since 1983, providing a detailed data set with which to examine the causes of changes in DOC concentrations. Here, we examine the relative roles of climate warming, decreasing sulfate (SO42-) and nitrate (NO3-) concentrations, and changes in the frequency and size of hydrologic events on the long-term temporal pattern (1992 to 2004) of DOC concentrations in Biscuit Brook. DOC concentrations increased significantly in weekly samples collected primarily during low flow conditions. No similar trend was apparent in the high flow samples. Mean annual SO42- plus NO3- concentrations showed a strong inverse relation (r2 = 0.91, p < 0.01) to DOC concentrations, but these concentrations were not related to stream pH nor to air temperature

  16. Non-conservative behaviors of chromophoric dissolved organic matter in a turbid estuary: Roles of multiple biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Yang, Liyang; Guo, Weidong; Hong, Huasheng; Wang, Guizhi

    2013-11-01

    Chromophoric dissolved organic matter (CDOM) may show notable non-conservative behaviors in many estuaries due to a variety of biogeochemical processes. The partition between CDOM and chromophoric particulate organic matter (CPOM) was examined in the Jiulong Estuary (China) using absorption and fluorescence spectroscopy, which was also compared with microbial and photochemical degradations. The absorption coefficient of water-soluble CPOM (aCPOM(280)) at ambient Milli-Q water pH (6.1) ranged from 0.11 to 7.94 m-1 in the estuary and was equivalent to 5-101% of CDOM absorption coefficient. The aCPOM(280) correlated significantly with the concentration of suspended particulate matter and was highest in the bottom water of turbidity maximum zone. Absorption spectral slope (S275-295) and slope ratio (SR) correlated positively with salinity for both CPOM and CDOM, suggesting decreases in the average molecular weight with increasing salinity. The adsorption of CDOM to re-suspended sediments (at 500 mg L-1) within 2 h was equivalent to 4-26% of the initial aCDOM(280). The adsorption of CDOM to particles was less selective with respect to various CDOM constituents, while the microbial degradation resulted decreases in S275-295 and SR of CDOM and preferential removal of protein-like components. The partition between CPOM and CDOM represented a rapid and important process for the non-conservative behavior of CDOM in turbid estuaries.

  17. [Neutrophilic lithotrophic iron-oxidizing prokaryotes and their role in the biogeochemical processes of the iron cycle].

    PubMed

    Dubinina, G A; Sorokina, A Iu

    2014-01-01

    Biology of lithotrophic neutrophilic iron-oxidizing prokaryotes and their role in the processes of the biogeochemical cycle of iron are discussed. This group of microorganisms is phylogenetically, taxonomically, and physiologically heterogeneous, comprising three metabolically different groups: aerobes, nitrate-dependent anaerobes, and phototrophs; the latter two groups have been revealed relatively recently. Their taxonomy and metabolism are described. Materials on the structure and functioning of the electron transport chain in the course of Fe(II) oxidation by members of various physiological groups are discussed. Occurrence of iron oxidizers in freshwater and marine ecosystems, thermal springs, areas of hydrothermal activity, and underwater volcanic areas are considered. Molecular genetic techniques were used to determine the structure of iron-oxidizing microbial communities in various natural ecosystems. Analysis of stable isotope fractioning of 56/54Fe in pure cultures and model experiments revealed predominance of biological oxidation over abiotic ones in shallow aquatic habitats and mineral springs, which was especially pronounced under microaerobic conditions at the redox zone boundary. Discovery of anaerobic bacterial Fe(II) oxidation resulted in development of new hypotheses concerning the possible role of microorganisms and the mechanisms of formation of the major iron ore deposits in Precambrian and early Proterozoic epoch. Paleobiological data are presented on the microfossils and specific biomarkers retrieved from ancient ore samples and confirming involvement of anaerobic biogenic processes in their formation.

  18. [Neutrophilic lithotrophic iron-oxidizing prokaryotes and their role in the biogeochemical processes of the iron cycle].

    PubMed

    2014-01-01

    Biology of lithotrophic neutrophilic iron-oxidizing prokaryotes and their role in the processes of the biogeochemical cycle of iron are discussed. This group of microorganisms is phylogenetically, taxonomically, and physiologically heterogeneous, comprising three metabolically different groups: aerobes, nitrate-dependent anaerobes, and phototrophs; the latter two groups have been revealed relatively recently. Their taxonomy and metabolism are described. Materials on the structure and functioning of the electron transport chain in the course of Fe(II) oxidation by members of various physiological groups are discussed. Occurrence of iron oxidizers in freshwater and marine ecosystems, thermal springs, areas of hydrothermal activity, and underwater volcanic areas are considered. Molecular genetic techniques were used to determine the structure of iron-oxidizing microbial communities in various natural ecosystems. Analysis of stable isotope fractioning of 56/54Fe in pure cultures and model experiments revealed predominance of biological oxidation over abiotic ones in shallow aquatic habitats and mineral springs, which was especially pronounced under microaerobic conditions at the redox zone boundary. Discovery of anaerobic bacterial Fe(II) oxidation resulted in development of new hypotheses concerning the possible role of microorganisms and the mechanisms of formation of the major iron ore deposits in Precambrian and early Proterozoic epoch. Paleobiological data are presented on the microfossils and specific biomarkers retrieved from ancient ore samples and confirming involvement of anaerobic biogenic processes in their formation. PMID:25507440

  19. [Neutrophilic lithotrophic iron-oxidizing prokaryotes and their role in the biogeochemical processes of the iron cycle].

    PubMed

    Dubinina, G A; Sorokina, A Iu

    2014-01-01

    Biology of lithotrophic neutrophilic iron-oxidizing prokaryotes and their role in the processes of the biogeochemical cycle of iron are discussed. This group of microorganisms is phylogenetically, taxonomically, and physiologically heterogeneous, comprising three metabolically different groups: aerobes, nitrate-dependent anaerobes, and phototrophs; the latter two groups have been revealed relatively recently. Their taxonomy and metabolism are described. Materials on the structure and functioning of the electron transport chain in the course of Fe(II) oxidation by members of various physiological groups are discussed. Occurrence of iron oxidizers in freshwater and marine ecosystems, thermal springs, areas of hydrothermal activity, and underwater volcanic areas are considered. Molecular genetic techniques were used to determine the structure of iron-oxidizing microbial communities in various natural ecosystems. Analysis of stable isotope fractioning of 56/54Fe in pure cultures and model experiments revealed predominance of biological oxidation over abiotic ones in shallow aquatic habitats and mineral springs, which was especially pronounced under microaerobic conditions at the redox zone boundary. Discovery of anaerobic bacterial Fe(II) oxidation resulted in development of new hypotheses concerning the possible role of microorganisms and the mechanisms of formation of the major iron ore deposits in Precambrian and early Proterozoic epoch. Paleobiological data are presented on the microfossils and specific biomarkers retrieved from ancient ore samples and confirming involvement of anaerobic biogenic processes in their formation. PMID:25423717

  20. U(VI) reduction at the nano, meso and meter scale: concomitant transition from simpler to more complex biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Veeramani, H.; Hochella, M. F.

    2012-12-01

    Reduction of aqueous hexavalent U(VI) to the sparingly soluble nanoparticulate mineral uraninite [UO2] represents a promising strategy for the in situ immobilization of uranium in contaminated subsurface sediments and groundwater. Studies related to uranium reduction have been extensively carried out at various scales ranging from nano to meso to the meter scale with varying degrees of success. While nanoscale processes involving simple two-electron transfer reactions such as enzymatic microbial U(VI) reduction results in biogenic UO2 formation, mesoscale processes involving minerals and U(VI) are a step up in complexity and have shown varying results ranging from partial uranium reduction to the formation of mixed U(IV)/U(V) species. Although nano- and meso-scale biogeochemical processes have been helpful in predicting the contaminant dynamics at the meter scale, their occurrence is not necessarily apparent in soils and aquifers given the enormous volume of contaminated groundwater to be remediated, among other factors. The formation and long-term stability of biologically reduced uranium at the meter scale is also determined in addition by the complex interplay of aqueous geochemistry, hydrology, soil and sediment mineralogy and microbial community dynamics. For instance, indigenous subsurface microbes often encounter multiple electron acceptors in heterogeneous environments during biostimulation and can catalyze the formation of various reactive biogenic minerals. In such cases, abiotic interactions between U(VI) and reactive biogenic minerals is potentially important because the success of a remediation strategy is contingent upon the speciation of reduced uranium. This presentation will give an overview of uranium reduction ranging from simple nanoscale biological processes to increasingly complex meso and meter scale processes involving abiotic interactions between aqueous uranium and nano-biogenic minerals and the effect of mineralogy and aqueous

  1. Biogeochemical processes and microbial diversity of the Gullfaks and Tommeliten methane seeps (Northern North Sea)

    NASA Astrophysics Data System (ADS)

    Wegener, G.; Shovitri, M.; Knittel, K.; Niemann, H.; Hovland, M.; Boetius, A.

    2008-02-01

    Fluid-flow related seafloor structures and gas seeps were detected in the North Sea in the 1970s and 1980s by acoustic sub-bottom profiling and oil rig surveys. A variety of features like pockmarks, gas vents and authigenic carbonate cements were found to be associated with sites of oil and gas exploration, indicating a link between these surface structures and underlying deep hydrocarbon reservoirs. In this study we performed acoustic surveys and videographic observation at Gullfaks, Holene Trench, Tommeliten, Witch's Hole and the giant pockmarks of the UK Block 15/25, to investigate the occurrence and distribution of cold seep ecosystems in the Northern North Sea. The most active gas seep sites, i.e. Gullfaks and Tommeliten, were investigated in detail: at both sites gas bubbles escaped continuously from small holes in the seabed to the water column, reaching the upper mixed surface layer as indicated by acoustic images of the gas flares. At Gullfaks a 0.1 km2 large gas emission site was detected on a flat sandy seabed, covered by filamentous sulfide-oxidizing bacteria. At Tommeliten we found a patchy distribution of small bacterial mats indicating sites of gas seepage. Here the seafloor consists of layers of sand and stiff clay, and gas emission was observed from small cracks in the seafloor. At both sites the anaerobic oxidation of methane (AOM) coupled to sulfate reduction is the major source of sulfide. Molecular analyses targeting specific lipid biomarkers and 16 S rRNA gene sequences identified an active microbial community dominated by sulfide-oxidizing and sulfate-reducing bacteria (SRB) as well as methanotrophic bacteria and archaea. Carbon isotope values of specific microbial fatty acids and alcohols were highly depleted, indicating that the microbial community at both gas seeps incorporates methane or its metabolites. The microbial community composition of both shallow seeps show high similarities to the deep water seeps associated with gas hydrates

  2. Biogeochemical processes and microbial diversity of the Gullfaks and Tommeliten methane seeps (Northern North Sea)

    NASA Astrophysics Data System (ADS)

    Wegener, G.; Shovitri, M.; Knittel, K.; Niemann, H.; Hovland, M.; Boetius, A.

    2008-08-01

    Fluid flow related seafloor structures and gas seeps were detected in the North Sea in the 1970s and 1980s by acoustic sub-bottom profiling and oil rig surveys. A variety of features like pockmarks, gas vents and authigenic carbonate cements were found to be associated with sites of oil and gas exploration, indicating a link between these surface structures and the underlying, deep hydrocarbon reservoirs. In this study we performed acoustic surveys and videographic observation at Gullfaks, Holene Trench, Tommeliten, Witch's Hole and the giant pockmarks of the UK Block 15/25, to investigate the occurrence and distribution of cold seep ecosystems in the Northern North Sea. The most active gas seep sites, i.e. Gullfaks and Tommeliten, were investigated in detail. At both sites, gas bubbles escaped continuously from small holes in the seabed to the water column, reaching the upper mixed surface layer. At Gullfaks a gas emitting, flat area of 0.1 km2 of sandy seabed covered by filamentous sulfur-oxidizing bacteria was detected. At Tommeliten, we found a patchy distribution of small bacterial mats indicating sites of gas seepage. Below the patches the seafloor consisted of sand from which gas emissions were observed. At both sites, the anaerobic oxidation of methane (AOM) coupled to sulfate reduction (SR) was the major source of sulfide. Molecular analyses targeting specific lipid biomarkers and 16S rRNA gene sequences identified an active microbial community dominated by sulfur-oxidizing and sulfate-reducing bacteria (SRB) as well as methanotrophic bacteria and archaea. Stable carbon isotope values of specific, microbial fatty acids and alcohols from both sites were highly depleted in the heavy isotope 13C, indicating that the microbial community incorporates methane or its metabolites. The microbial community composition of both shallow seeps shows high similarities to the deep water seeps associated with gas hydrates such as Hydrate Ridge or the Eel River basin.

  3. One-Dimensional Coupled Ecosystem-Carbon Flux Model for the Simulation of Biogeochemical Parameters at Ocean Weather Station P

    NASA Technical Reports Server (NTRS)

    Signorini, S.; McClain, C.; Christian, J.; Wong, C. S.

    2000-01-01

    In this Technical Publication, we describe the model functionality and analyze its application to the seasonal and interannual variations of phytoplankton, nutrients, pCO2 and CO2 concentrations in the eastern subarctic Pacific at Ocean Weather Station P (OWSP, 50 deg. N 145 deg. W). We use a verified one-dimensional ecosystem model, coupled with newly incorporated carbon flux and carbon chemistry components, to simulate 22 years (1958-1980) of pCO2 and CO2 variability at Ocean Weather Station P (OWS P). This relatively long period of simulation verifies and extends the findings of previous studies using an explicit approach for the biological component and realistic coupling with the carbon flux dynamics. The slow currents and the horizontally homogeneous ocean in the subarctic Pacific make OWS P one of the best available candidates for modeling the chemistry of the upper ocean in one dimension. The chlorophyll and ocean currents composite for 1998 illustrates this premise. The chlorophyll concentration map was derived from SeaWiFS data and the currents are from an OGCM simulation (from R. Murtugudde).

  4. Isotopic order, biogeochemical processes, and earth history - Goldschmidt lecture, Davos, Switzerland, August 2002

    NASA Astrophysics Data System (ADS)

    Hayes, John M.

    2004-04-01

    The impetus to interpret carbon isotopic signals comes from an understanding of isotopic fractionations imposed by living organisms. That understanding rests in turn on studies of enzymatic isotope effects, on fruitful concepts of isotopic order, and on studies of the distribution of 13C both between and within biosynthetic products. In sum, these studies have shown that the isotopic compositions of biological products are governed by reaction kinetics and by pathways of carbon flow. Isotopic compositions of individual compounds can indicate specific processes or environments. Examples include biomarkers which record the isotopic compositions of primary products in aquatic communities, which indicate that certain bacteria have used methane as a carbon source, and which show that some portions of marine photic zones have been anaerobic. In such studies, the combination of structural and isotopic lines of evidence reveals relationships between compounds and leads to process-related thinking. These are large steps. Reconstruction of the sources and histories of molecular fossils redeems much of the early promise of organic geochemistry by resolving and clarifying paleoenviron-mental signals. In turn, contemplation of this new information is driving geochemists to study microbial ecology and evolution, oceanography, and sedimentology.

  5. Development of advanced process-based model towards evaluation of boundless biogeochemical cycles in terrestrial-aquatic continuum

    NASA Astrophysics Data System (ADS)

    Nakayama, Tadanobu; Maksyutov, Shamil

    2014-05-01

    Recent research shows inland water may play some role in continental biogeochemical cycling though its contribution has remained uncertain due to a paucity of data (Battin et al. 2009). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which incorporates surface-groundwater interactions, includes up- and down-scaling processes between local, regional and global scales, and can simulate iteratively nonlinear feedback between hydrologic, geomorphic, and ecological processes. In this study, NICE was extended to evaluate global hydrologic cycle by using various global datasets. The simulated result agreed reasonably with that in the previous research (Fan et al., 2013) and extended to clarify further eco-hydrological process in global scale. Then, NICE was further developed to incorporate the biogeochemical cycle including the reaction between inorganic and organic carbons (DOC, POC, DIC, pCO2, etc.) in the biosphere (terrestrial and aquatic ecosystems including surface water and groundwater). The model simulated the carbon cycle, for example, CO2 evasion from inland water in global scale, which is relatively in good agreement in that estimated by empirical relation using the previous pCO2 data (Aufdenkampe et al., 2011; Global River Chemistry Database, 2013). This simulation system would play important role in identification of full greenhouse gas balance of the biosphere and spatio-temporal hot spots in boundless biogeochemical cycle (Cole et al. 2007; Frei et al. 2012). References; Aufdenkampe, A.K., et al., Front. Ecol. Environ., doi:10.1890/100014, 2011. Battin, T.J., et al., Nat. Geosci., 2, 598-600, 2009. Cole, J.J. et al., Ecosystems, doi:10.1007/s10021-006-9013-8, 2007. Fan, Y. et al

  6. Induction coupled thermomagnetic processing: A disruptive technology

    DOE PAGES

    Ahmad, Aquil; Mackiewicz-Ludtka, Gail; Pfaffmann, George; Ludtka, Gerard Michael

    2016-06-01

    Here, one of the major goals of the U.S. Department of Energy (DoE) is to achieve energy savings with a corresponding reduction in the carbon footprint. With this in mind, the DoE sponsored the Induction Coupled Thermomagnetic Processing (ITMP) project with major partners Eaton Corp., Ajax Tocco Magnethermic, and Oak Ridge National Laboratory (ORNL) to evaluate the viability of processing metals in a strong magnetic field.

  7. A comparison of coupled biogeophysical and biogeochemical dynamics across a precipitation gradient in Oregon using data assimilation

    NASA Astrophysics Data System (ADS)

    Pettijohn, J. C.; Law, B. E.; Williams, M. D.; Stoekli, R.; Thornton, P. E.; Thomas, C. K.; Hudiburg, T. W.; Martin, J.

    2010-12-01

    We present results from our coupled biophysical - biochemical model data fusion (MDF) analysis across a climatic gradient in Oregon, USA, using data from a coast-range Douglas-fir (US-Fir; 2006-2008) and a semi-arid ponderosa pine (US-Me2; 2002-2008) AmeriFlux site. Our MDF scheme couples the Ensemble Kalman Filter (EnKF) with the National Center for Atmospheric Research (NCAR) Community Land Model with Carbon-Nitrogen coupling (CLM-CN, version 3.5). Assimilated data includes continuous eddy covariance measurements of forest-atmosphere CO2 (NEE, net ecosystem exchange) and water vapor fluxes (λE, latent heat flux), chamber-based soil respiratory flux, soil moisture and temperature, snow depth (US-Me2), MODIS-derived 8 day LAI, and carbon and nitrogen pools. We quantify the ecosystem carbon and nitrogen budgets, partition NEE and λE fluxes, and thus increase confidence in multi-scale controls on CO2 and water vapor exchange. The MDF did a better job predicting NEE than λE at both sites (r2 = 0.86 for NEE at both sites; λE r2 = 0.65 and 0.63 at the US-ME2 and US-Fir sites, respectively) partly due to a weighting scheme we prescribed for NEE. The distribution of carbon and nitrogen differed significantly between sites, with total ecosystem carbon (vegetation, detritus, soil) of the US-Fir site being about 1.4 times higher than the US-Me2 site (35 kg C m-2 vs. 25 kg C m-2). Mean NEE over overlapping water years ‘07-‘08 was -495 gC m-2 at the US-Me2 site as opposed to -809 gC m-2 at the US-Fir site, nearly a two-fold difference in C uptake across this precipitation gradient. Average GPP and ecosystem respiration (Re) over these two water years were both ~1.7x greater at the US-Fir site, with 1712 gC m^-2 and 1217 gC m-2, respectively, at the US-Me2 site vs. 2841 gC m-2 and 2032 gC m-2 at the US-Fir. Autotrophic respiration contributed 79% and 72% to the Re flux at the US-Me2 and US-Fir sites, respectively, with total soil respiration contributing 53% and 58% to

  8. Physical and biogeochemical processes controlling particle fluxes variability and carbon export in the Southern Adriatic

    NASA Astrophysics Data System (ADS)

    Turchetto, M.; Boldrin, A.; Langone, L.; Miserocchi, S.

    2012-08-01

    In the framework of the Vector Project downward particle fluxes have been measured in a station located in the centre of the South Adriatic Pit from November 2006 to August 2008. Sediment trap samples were collected at two different depths, below the photic layer (168 m) and near the bottom (1174 m), and analysed for total mass flux, for total and organic carbon, total nitrogen, carbonate, stable isotope of organic carbon (δ13Corg) and biogenic silica contents. The results have been integrated and compared with data obtained from previous research projects, carried out in the Southern Adriatic area in 1994-1995 and 1997-1998. Fluxes of particulate matter showed high seasonal and interannual variability, with maximum values in late winter-spring season. The organic carbon flux, followed the same seasonal trend, with higher values below the photic zone, and peaks in spring, related to blooms of silica and/or carbonates phytoplankton organisms (e.g., diatoms, coccolithophorids). The organic carbon export from the photic layer was of 5.2 and 2.1 g C m-2 y-1 reached the bottom. Climatological cycles and, in particular, the maximum depth of the convective vertical mixing determined the high fluxes measured in 1998 and in 2008 springs. Total mass fluxes measured at the bottom trap were twofold those measured below the photic layer, and showed a high lithogenic fraction, highlighting the presence of advective processes that appear particularly active in the area. These processes can be correlated with the spreading of dense waters coming from the north and central Adriatic, generally observed in spring. The elemental and isotopic composition of bottom trap samples, resulted similar to that of samples collected in the south-western Adriatic slope, corroborating the assumption that lateral advection other than vertical input were contributing to bottom particle fluxes.

  9. Distinguishing biogeochemical processes influencing phosphorus dynamics in oxidizing and desiccating mud deposits from a freshwater wetland system

    NASA Astrophysics Data System (ADS)

    Saaltink, Rémon; Dekker, Stefan C.; Wassen, Martin J.; Griffioen, Jasper

    2015-04-01

    Focus and aim: Currently, lake Markermeer (680 km2) provides poor environmental conditions for the development of flora and fauna due to a thick fluffy layer that prevails at the lake's bed. To improve the conditions in the lake, large wetlands will be built from this fluffy layer, possibly mixed with sand or with the underlying Southern Sea deposit. The aim of this study is to distinguish biogeochemical processes influencing phosphorus dynamics in porewater during oxidation and desiccation of mud deposits from this lake. We focus on three important aspects that potentially influence these processes: granulometry, sediment type and modification by plants. Material and methods: A greenhouse experiment was conducted with three types of sediment that potentially will function as building material for the islands: fluffy mud (FM), sandy mud (SM) and Southern Sea deposit (SSD). Reed (Phragmites australis) was planted in half of the pots to distinguish influence by plants. For six months, the porewater-, soil- and plant quality was monitored to determine important biogeochemical processes. Variables measured from the porewater include: Cl-, NO2-, NO3-, PO43- and SO42- (IC); Ca, Fe, K, Mn, Na, P, Si, Sr (ICP-OES); as well as Fe2+, pH, alkalinity and EC. A phosphorus fractionation was carried out on the sediment to determine the phosphorus pools and the major elements of the sediments were determined following an aqua regia destruction using ICP-OES. Plant tissue was analysed for N, P, K and C content as well as the above- and belowground biomass. Results and discussion: It was found that sulfate production was the most important process influencing phosphorus availability in these soils. Due to oxidation processes in the mud, sulfate (SO42-) concentrations rose drastically in porewater from 100 ppm at the beginning of the experiment to well over 2000 ppm at the end of the experiment. This effect was strongest in SSD soils, likely due to higher presence of pyrite that gets

  10. Biogeochemical Processes Responsible for the Enhanced Transport of Plutonium Under transient Unsaturated Ground Water Conditions

    SciTech Connect

    Fred J. Molz, III

    2010-05-28

    To better understand longer-term vadose zone transport in southeastern soils, field lysimeter experiments were conducted at the Savannah River Site (SRS) near Aiken, SC, in the 1980s. Each of the three lysimeters analyzed herein contained a filter paper spiked with different Pu solutions, and they were left exposed to natural environmental conditions (including the growth of annual weed grasses) for 11 years. The resulting Pu activity measurements from each lysimeter core showed anomalous activity distributions below the source, with significant migration of Pu above the source. Such results are not explainable by adsorption phenomena alone. A transient variably saturated flow model with root water uptake was developed and coupled to a soil reactive transport model. Somewhat surprisingly, the fully transient analysis showed results nearly identical to those of a much simpler steady flow analysis performed previously. However, all phenomena studied were unable to produce the upward Pu transport observed in the data. This result suggests another transport mechanism such as Pu uptake by roots and upward transport due to transpiration. Thus, the variably saturated flow and reactive transport model was extended to include uptake and transport of Pu within the root xylem, along with computational methodology and results. In the extended model, flow velocity in the soil was driven by precipitation input along with transpiration and drainage. Water uptake by the roots determined the flow velocity in the root xylem, and this along with uptake of Pu in the transpiration stream drove advection and dispersion of the two Pu species in the xylem. During wet periods with high potential evapotranspiration, maximum flow velocities through the xylem would approached 600 cm/hr, orders of magnitude larger that flow velocities in the soil. Values for parameters and the correct conceptual viewpoint for Pu transport in plant xylem was uncertain. This motivated further experiments devoted

  11. The Precambrian Biogeochemical Carbon Isotopic Record: Contributions of Thermal Versus Biological Processes

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; DeVincenzi, Donald L. (Technical Monitor)

    2000-01-01

    Superplumes offer a new approach for understanding global C cycles. Isotopes help to discern the impacts of geological, environmental and biological processes ujpun the evolution of these cycles. For example, C-13/C-12 values of coeval sedimentary organics and carbonates give global estimates of the fraction of C buried as organics (Forg), which today lies near 0.2. Before Oxygenic photosynthesis arose, our biosphere obtained reducing power for biosynthesis solely from thermal volatiles and rock alteration. Thus Forg was dominated by the mantle redox state, which has remained remarkably constant for greater than Gy. Recent data confirm that the long-term change in Forg had been small, indicating that the mantle redox buffer remains important even today. Oxygenic photosynthesis enabled life to obtain additional reducing power by splitting the water molecule. Accordingly, biological organic production rose above the level constrained by the mantle-derived flux of reduced species. For example, today, chemoautotrophs harvesting energy from hydrothermal emanations can synthesize at most between 0.2 x 10(exp 12) and 2x 10(exp 12) mol C yr-1 of organic C globally. In contrast, global photosynthetic productivity is estimated at 9000 x 10(exp 12) mol C yr-1. Occasionally photosynthetic productivity did contribute to dramatically -elevated Forg values (to 0.4 or more) as evidenced by very high carbonate C-13/C-12. The interplay between biological, tectonic and other environmental factors is illustrated by the mid-Archean to mid-Proterozoic isotopic record. The relatively constant C-13/C-12 values of Archean carbonates support the view that photosynthetically-driven Forg increases were not yet possible. In contrast, major excursions in C-13/C-12, and thus also in Forg, during the early Proterozoic confirmed the global importance of oxygenic photosynthesis by that time. Remarkably, the superplume event at 1.9 Ga did not trigger another major Forg increase, despite the

  12. Microbial Analysis of Australian Dry Lake Cores; Analogs For Biogeochemical Processes

    NASA Astrophysics Data System (ADS)

    Nguyen, A. V.; Baldridge, A. M.; Thomson, B. J.

    2014-12-01

    Lake Gilmore in Western Australia is an acidic ephemeral lake that is analogous to Martian geochemical processes represented by interbedded phyllosilicates and sulfates. These areas demonstrate remnants of a global-scale change on Mars during the late Noachian era from a neutral to alkaline pH to relatively lower pH in the Hesperian era that continues to persist today. The geochemistry of these areas could possibly be caused by small-scale changes such as microbial metabolism. Two approaches were used to determine the presence of microbes in the Australian dry lake cores: DNA analysis and lipid analysis. Detecting DNA or lipids in the cores will provide evidence of living or deceased organisms since they provide distinct markers for life. Basic DNA analysis consists of extraction, amplification through PCR, plasmid cloning, and DNA sequencing. Once the sequence of unknown DNA is known, an online program, BLAST, will be used to identify the microbes for further analysis. The lipid analysis approach consists of phospholipid fatty acid analysis that is done by Microbial ID, which will provide direct identification any microbes from the presence of lipids. Identified microbes are then compared to mineralogy results from the x-ray diffraction of the core samples to determine if the types of metabolic reactions are consistent with the variation in composition in these analog deposits. If so, it provides intriguing implications for the presence of life in similar Martian deposits.

  13. Inorganic carbon cycling and biogeochemical processes in an Arctic inland sea (Hudson Bay)

    NASA Astrophysics Data System (ADS)

    Burt, William J.; Thomas, Helmuth; Miller, Lisa A.; Granskog, Mats A.; Papakyriakou, Tim N.; Pengelly, Leah

    2016-08-01

    The distributions of carbonate system parameters in Hudson Bay, which not only receives nearly one-third of Canada's river discharge but is also subject to annual cycles of sea-ice formation and melt, indicate that the timing and magnitude of freshwater inputs play an important role in carbon biogeochemistry and acidification in this unique Arctic ecosystem. This study uses basin-wide measurements of dissolved inorganic carbon (DIC) and total alkalinity (TA), as well as stable isotope tracers (δ18O and δ13CDIC), to provide a detailed assessment of carbon cycling processes within the bay. Surface distributions of carbonate parameters reveal the particular importance of freshwater inputs in the southern portion of the bay. Based on TA, we surmise that the deep waters in the Hudson Bay are largely of Pacific origin. Riverine TA end-members vary significantly both regionally and with small changes in near-surface depths, highlighting the importance of careful surface water sampling in highly stratified waters. In an along-shore transect, large increases in subsurface DIC are accompanied by equivalent decreases in δ13CDIC with no discernable change in TA, indicating a respiratory DIC production on the order of 100 µmol kg-1 DIC during deep water circulation around the bay.

  14. [Biogeochemical processes of the major ions and dissolved inorganic carbon in the Guijiang River].

    PubMed

    Tang, Wen-Kui; Tao, Zhen; Gao, Quan-Zhou; Mao, Hai-Ruo; Jiang, Guang-Hui; Jiao, Shu-Lin; Zheng, Xiong-Bo; Zhang, Qian-Zhu; Ma, Zan-Wen

    2014-06-01

    Within the drainage basin, information about natural processes and human activities can be recorded in the chemical composition of riverine water. The analysis of the Guijiang River, the first level tributary of the Xijiang River, demonstrated that the chemical composition of water in the Guijiang River was mainly influenced by the chemical weathering of carbonate rocks within the drainage basin, in which CO2 was the main erosion medium, and that the weathering of carbonate rock by H2SO4 had a remarkable impact on the water chemical composition in the Guijiang River. Precipitation, human activities, the weathering of carbonate rocks and silicate rocks accounted for 2.7%, 6.3%, 72.8% and 18.2% of the total dissolved load, respectively. The stable isotopic compositions of dissolved inorganic carbon (delta13C(DIC)) indicated that DIC in the Guijiang River had been assimilated by the phytoplankton in photosynthesis. The primary production of phytoplankton contributed to 22.3%-30.9% of particulate organic carbon (POC) in the Guijiang River, which implies that phytoplankton can transform DIC into POC by photosynthesis, and parts of POC will sink into the bottom of the river in transit, which leads into the formation of burial organic carbon.

  15. Benthic Communities as Indicators of Geological and Biogeochemical Processes in the Gulf of Papua

    NASA Astrophysics Data System (ADS)

    Aller, J. Y.; Dhir, S.; Chummar, J.; Dantzler, M. M.; Aller, R. C.

    2003-12-01

    Benthic communities inhabiting Gulf of Papua deposits play important roles in determining remineralization and material cycling processes at the seafloor. Faunal abundances, size-frequency distributions, functional groups, and vertical distributions reflect a spectrum of diagenetic depositional environments produced by variations in local sediment transport dynamics and coastal morphology. Thus faunal properties provide a basis for comparison of factors influencing sediment - overlying water interactions, elemental cycling, and material storage. During mid NW monsoon periods (Jan-Feb), macrofaunal densities at Gulf stations are generally low (260 to 1270 m{-2 }), large macroinfauna are absent in the upper ˜25 cm, and small (< 0.5 mm) surface deposit-feeding polychaetes and tubiculous amphipods dominate, reflecting a frequently destabilized seabed and high sedimentation / erosion rates. Although significant numbers of macrofauna have generally been found to be absent over large areas due to frequent physical disturbance, sedimentary structures demonstrate that many regions of the GoP deltaic complex are periodically extensively bioturbated by relatively large and deep-burrowing infauna. Additionally, faunal samples from February 2003 have significantly increased numbers of opportunistic polychaete and crustacean species relative to 1999 and 2000, indicating that there are periods of faunal colonization and community expansion. These changes may correlate with decreased riverine sediment input associated with El Niño conditions. While the macrofaunal community is relatively depauperate and apparently subject to inhibition by inhospitable physical conditions, the microbial community is highly active, diverse, and abundant throughout the upper ˜1m. The dominance of bacteria and microfauna rather than macrofauna in wet tropical environments like the GoP, contrasts with many reactive continental shelf mud deposits in temperate regions.

  16. Combined physical and biogeochemical processes control the mobility of arsenic in rivers of the Atacama desert, Northern Chile

    NASA Astrophysics Data System (ADS)

    Packman, A.; Gaillard, J.; Pasten, P.; Pizarro, G.; Alsina, M.; Vega, A.; Florenzano, A.; MacDonald, L.; Chen, C.

    2008-12-01

    Many watersheds are contaminated by arsenic (As) derived from natural weathering of earth-surface minerals. Some of the highest naturally occurring As concentrations in surface waters occur in the Atacama desert, Chile. Arsenic enters the Rio Loa and Rio Lluta watersheds from hydrothermal sources in the high Altiplano, producing substantial dissolved and particulate-phase As throughout both river systems. Further, occasional floods related to the ENSO cycle have produced substantial pulses of sediment-laden, As-rich water. Nonetheless, water scarcity in this extremely arid region causes the resident population to rely on these river systems for water supply, and this has historically led to substantial public health effects from chronic As exposure. Despite the scientific and practical significance of As in the rivers of northern Chile, little information is available on the processes that control As dynamics in these systems. Recently we have investigated the distribution and speciation of As in the Rio Loa and Rio Lluta river networks using a variety of new measurement methodologies in an attempt to understand how the interplay of physical and biogeochemical processes regulates As migration through these systems. The unusual chemistry associated with these volcanic, hyper-arid watersheds appears to make As more mobile in these systems than in other types of As-contaminated rivers, favoring rapid remobilization during high-flow events. Further, As transport is largely conservative under low-flow conditions, and its concentration is primarily regulated by dilution from uncontaminated sources and concentration due to the very high rates of evaporation that occur during downstream transport.

  17. New insights into biogeochemical processing gained from sub-daily river monitoring

    NASA Astrophysics Data System (ADS)

    Halliday, S. J.; Wade, A. J.; Skeffington, R. A.; Bowes, M.; Palmer-Felgate, E.; Loewenthal, M.; Jarvie, H.; Neal, C.; Reynolds, B.; Gozzard, E.; Newman, J.

    2012-12-01

    This talk will focus on the insights obtained from sub-daily hydrochemical monitoring for a sustained time periods (> 1 year), at multiple sites within a catchment and across different catchment types. Sub-daily instream hydrochemical dynamics were investigated, using non-stationary time-series analysis techniques, for two catchments representative of upland and lowland UK. The River Hafren at Plynlimon, mid-Wales drains an upland catchment where half the land cover is unmanaged moorland and the other half is first generation plantation forestry. The Hafren was monitored at two sites on a 7-hourly basis, between March 2007 and January 2009, using a Xian automatic sampler. The River Enborne, Berkshire, southeast England, is a rural lowland catchment, impacted by agricultural runoff, and septic tank and sewage treatment works discharges. The Enborne was monitored on an hourly basis between November 2009 and February 2012, using in situ field deployable analytical equipment to measure: Total Reactive Phosphorus (TRP: Systea Micromac C), Nitrate (Hach-Lange Nitratax), pH, dissolved oxygen, conductivity and water temperature (YSI 6600 Multi-parameter sonde). The results reveal complex diurnal patterns which exhibit seasonal changes in phase and amplitude, and are influenced by both flow conditions and nutrient sources. The comparison of the upland and lowland nitrate time series highlights how the different nitrogen sources within each system results in marked differences in the seasonal and diurnal dynamics, with a seasonal maximum in winter and a single peak diurnal cycle in the upland system, compared to a summer maximum and a two peak diurnal cycle in the lowland system. The analysis of TRP and nitrate concentrations in the Enborne catchment, in combination with flow, pH, dissolved oxygen, conductivity and water temperature, allowed the main processes controlling the observed sub-daily nutrient dynamics to be investigated. The different monitoring approaches adopted

  18. Coupled transport processes in semipermeable media

    SciTech Connect

    Jacobsen, J.S.; Carnahan, C.L.

    1990-04-01

    A numerical simulator has been developed to investigate the effects of coupled processes on heat and mass transport in semipermeable media. The governing equations on which the simulator is based were derived using the thermodynamics of irreversible processes. The equations are nonlinear and have been solved numerically using the n-dimensional Newton's method. As an example of an application, the numerical simulator has been used to investigate heat and solute transport in the vicinity of a heat source buried in a saturated clay-like medium, in part to study solute transport in bentonite packing material surrounding a nuclear waste canister. The coupled processes considered were thermal filtration, thermal osmosis, chemical osmosis and ultrafiltration. In the simulations, heat transport by coupled processes was negligible compared to heat conduction, but pressure and solute migration were affected. Solute migration was retarded relative to the uncoupled case when only chemical osmosis was considered. When both chemical osmosis and thermal osmosis were included, solute migration was enhanced. 18 refs., 20 figs.

  19. Biogeochemical Processes Related to Metal Removal and Toxicity Reduction in the H-02 Constructed Wetland, Savannah River Site

    NASA Astrophysics Data System (ADS)

    Burgess, E. A.; Mills, G. L.; Harmon, M.; Samarkin, V.

    2011-12-01

    The H-02 wetland system was designed to treat building process water and storm water runoff from multiple sources associated with the Tritium Facility at the DOE-Savannah River Site, Aiken, SC. The wetland construction included the addition of gypsum (calcium sulfate) to foster a sulfate-reducing bacterial population. Conceptually, the wetland functions as follows: ? Cu and Zn initially bind to both dissolved and particulate organic detritus within the wetland. ? A portion of this organic matter is subsequently deposited into the surface sediments within the wetland. ? The fraction of Cu and Zn that is discharged in the wetland effluent is organically complexed, less bioavailable, and consequently, less toxic. ? The Cu and Zn deposited in the surface sediments are eventually sequestered into insoluble sulfide minerals in the wetland. Development of the H-02 system has been closely monitored; sampling began in August 2007, shortly after its construction. This monitoring has included the measurement of water quality parameters, Cu and Zn concentrations in surface water and sediments, as well as, characterization of the prokaryotic (e.g., bacterial) component of wetland biogeochemical processes. Since the beginning of the study, the mean influent Cu concentration was 31.5±12.1 ppb and the mean effluent concentration was 11.9±7.3 ppb, corresponding to an average Cu removal of 64%. Zn concentrations were more variable, averaging 39.2±13.8 ppb in the influent and 25.7±21.3 ppb in the effluent. Average Zn removal was 52%. The wetland also ameliorated high pH values associated with influent water to values similar to those measured at reference sites. Seasonal variations in DOC concentration corresponded to seasonal variations in Cu and Zn removal efficiency. The concentration of Cu and Zn in the surface layer of the sediments has increased over the lifetime of the wetland and, like removal efficiency, demonstrated seasonal variation. Within its first year, the H-02

  20. Transpiration Driven Hydrologic Transport in vegetated shallow water environments: Implications on Diel and Seasonal Soil Biogeochemical Processes and System Management

    NASA Astrophysics Data System (ADS)

    Bachand, P.; Bachand, S. M.; Fleck, J.; Anderson, F.

    2011-12-01

    modified Peclet No. calculations, we quantified the relative importance of upward diffusion from the sediments and downward advection from transpiration as hydrologic transport mechanisms in the root zone. Transpiration driven infiltration moves water past the diffusive zone within 1 - 2 days in this system during the summer months. With the waning seasons, evapotranspiration diminishes until by winter diffusion dominates throughout the entire root zone. This model has great implications on the analyses of soil biogeochemical process in the root zone of shallow aquatic systems. Downward advection is a major transport mechanism into the root zone of shallow flooded aquatic systems and provides an important physical mechanism that drives variability in the seasonal and diel storage; release and cycling of COCs; and the creation of both a physical and chemical barrierd to upward diffusion of soil-borne COCs into the water column. Models that do not account for root zone interactions may not be able to capture diel and seasonal differences. Moreover, these interactions may lead to unanticipated environmental consequences as a result of cultural practices.

  1. Use of Zn isotopes as a probe of anthropogenic contamination and biogeochemical processes in the Seine River, France

    NASA Astrophysics Data System (ADS)

    Chen, J.; Gaillardet, J.; Louvat, P.; Birck, J.

    2009-05-01

    a whole river basin, showing Zn isotopes a powerful probe to trace contamination sources and biogeochemical processes in hydrologic systems.

  2. Modeling of Inner Magnetosphere Coupling Processes

    NASA Technical Reports Server (NTRS)

    Khazanov, George V.

    2011-01-01

    The Ring Current (RC) is the biggest energy player in the inner magnetosphere. It is the source of free energy for Electromagnetic Ion Cyclotron (EMIC) wave excitation provided by a temperature anisotropy of RC ions, which develops naturally during inward E B convection from the plasmasheet. The cold plasmasphere, which is under the strong influence of the magnetospheric electric field, strongly mediates the RC-EMIC wave-particle-coupling process and ultimately becomes part of the particle and energy interplay. On the other hand, there is a strong influence of the RC on the inner magnetospheric electric and magnetic field configurations and these configurations, in turn, are important to RC dynamics. Therefore, one of the biggest needs for inner magnetospheric research is the continued progression toward a coupled, interconnected system with the inclusion of nonlinear feedback mechanisms between the plasma populations, the electric and magnetic fields, and plasma waves. As we clearly demonstrated in our studies, EMIC waves strongly interact with electrons and ions of energies ranging from approx.1 eV to approx.10 MeV, and that these waves strongly affect the dynamics of resonant RC ions, thermal electrons and ions, and the outer RB relativistic electrons. As we found, the rate of ion and electron scattering/heating in the Earth's magnetosphere is not only controlled by the wave intensity-spatial-temporal distribution but also strongly depends on the spectral distribution of the wave power. The latter is also a function of the plasmaspheric heavy ion content, and the plasma density and temperature distributions along the magnetic field lines. The above discussion places RC-EMIC wave coupling dynamics in context with inner magnetospheric coupling processes and, ultimately, relates RC studies with plasmaspheric and Superthermal Electrons formation processes as well as with outer RB physics.

  3. A coupled geochemical and biogeochemical approach to characterize the bioreactivity of dissolved organic matter from a headwater stream

    NASA Astrophysics Data System (ADS)

    Sleighter, Rachel L.; Cory, Rose M.; Kaplan, Louis A.; Abdulla, Hussain A. N.; Hatcher, Patrick G.

    2014-08-01

    The bioreactivity or susceptibility of dissolved organic matter (DOM) to microbial degradation in streams and rivers is of critical importance to global change studies, but a comprehensive understanding of DOM bioreactivity has been elusive due, in part, to the stunningly diverse assemblages of organic molecules within DOM. We approach this problem by employing a range of techniques to characterize DOM as it flows through biofilm reactors: dissolved organic carbon (DOC) concentrations, excitation emission matrix spectroscopy (EEMs), and ultrahigh resolution mass spectrometry. The EEMs and mass spectral data were analyzed using a combination of multivariate statistical approaches. We found that 45% of stream water DOC was biodegraded by microorganisms, including 31-45% of the humic DOC. This bioreactive DOM separated into two different groups: (1) H/C centered at 1.5 with O/C 0.1-0.5 or (2) low H/C of 0.5-1.0 spanning O/C 0.2-0.7 that were positively correlated (Spearman ranking) with chromophoric and fluorescent DOM (CDOM and FDOM, respectively). DOM that was more recalcitrant and resistant to microbial degradation aligned tightly in the center of the van Krevelen space (H/C 1.0-1.5, O/C 0.25-0.6) and negatively correlated (Spearman ranking) with CDOM and FDOM. These findings were supported further by principal component analysis and 2-D correlation analysis of the relative magnitudes of the mass spectral peaks assigned to molecular formulas. This study demonstrates that our approach of processing stream water through bioreactors followed by EEMs and FTICR-MS analyses, in combination with multivariate statistical analysis, allows for precise, robust characterization of compound bioreactivity and associated molecular level composition.

  4. Coupled transport processes in semipermeable media

    SciTech Connect

    Carnahan, C.L.; Jacobsen, J.S.

    1990-04-01

    The thermodynamics of irreversible processes (TTIP) is used to derive governing equations and phenomenological equations for transport processes and chemical reactions in water-saturated semipermeable media. TTIP is based on three fundamental postulates. The first postulate, the assumption of local equilibrium, allows the formulation of balance equations for entropy. These equations are the bases for the derivation of governing equations for the thermodynamic variables, temperature, pressure, and composition. The governing equations involve vector fluxes of heat and mass and scalar rates of chemical reactions; in accordance with the second postulate of TTIP, these fluxes and rates are related, respectively, to all scalar driving forces (gradients of thermodynamic variables) acting within the system. The third postulate of TTIP states equality (the Onsager reciprocal relations) between certain of the phenomenological coefficients relating forces and fluxes. The description by TTIP of a system undergoing irreversible processes allows consideration of coupled transport processes such as thermal osmosis, chemical osmosis, and ultrafiltration. The coupled processes can make significant contributions to flows of mass and energy in slightly permeable, permselective geological materials such as clays and shales.

  5. Correlation resonance generated by coupled enzymatic processing.

    PubMed

    Mather, William H; Cookson, Natalie A; Hasty, Jeff; Tsimring, Lev S; Williams, Ruth J

    2010-11-17

    A major challenge for systems biology is to deduce the molecular interactions that underlie correlations observed between concentrations of different intracellular molecules. Although direct explanations such as coupled transcription or direct protein-protein interactions are often considered, potential indirect sources of coupling have received much less attention. Here we show how correlations can arise generically from a posttranslational coupling mechanism involving the processing of multiple protein species by a common enzyme. By observing a connection between a stochastic model and a multiclass queue, we obtain a closed form expression for the steady-state distribution of the numbers of molecules of each protein species. Upon deriving explicit analytic expressions for moments and correlations associated with this distribution, we discover a striking phenomenon that we call correlation resonance: for small dilution rate, correlations peak near the balance-point where the total rate of influx of proteins into the system is equal to the maximum processing capacity of the enzyme. Given the limited number of many important catalytic molecules, our results may lead to new insights into the origin of correlated behavior on a global scale.

  6. Effects of biogeochemical processes on magnesium isotope variations in a forested catchment in the Vosges Mountains (France)

    NASA Astrophysics Data System (ADS)

    Bolou-Bi, Emile B.; Vigier, Nathalie; Poszwa, Anne; Boudot, Jean-Pierre; Dambrine, Etienne

    2012-06-01

    This study investigates the potential of Mg isotopes as tracers of biogeochemical processes in a small-forested catchment located on sandstones extremely poor in Mg-bearing minerals. The average δ26Mg is -0.63 ± 0.12‰ and 0 ± 0.14‰ for local rainwater and bedrock, respectively. From the C horizon to the upper eluvial (E) horizon, soil δ26Mg (from 0.0 ± 0.14‰ to 0.25 ± 0.14‰) is close to the bedrock value, while more than 70% of Mg is lost, suggesting a small isotopic shift during illite dissolution. The surface soil horizon (Ah) δ26Mg is close to plant δ26Mg, and especially to the grass δ26Mg value (-0.49‰). The bulk δ26Mg of trees and grass (-0.32‰ and -0.41‰, respectively) are higher than the average δ26Mg values of the soil exchangeable fraction (-0.92‰ to -0.42‰), and of rainwater (-0.65‰). Within plants, roots are enriched in heavy isotopes, whereas light isotopes are preferentially translocated and stored in the above ground parts. In Norway spruce, the older needles, forming the annual litterfall, are isotopically lighter and strongly depleted in Mg compared to more recent needles. Soil solution δ26Mg shifts seasonally, from low values, lower than rainwater and close to litterfall during a high rainfall period in spring, to higher values, close to soil δ26Mg in dryer periods of winter or summer. At the watershed scale, streamwater δ26Mg varies between -0.85 ± 0.14‰ and -0.08 ± 0.14‰ and δ26Mg values decrease linearly with discharge. The high streamwater δ26Mg at low flow, close to bedrock δ26Mg, most likely reflects dissolution processes in the deep saprolite in relation to the very long water residence time. Conversely, we suggest that low stream level δ26Mg values are at least partly related to the contribution of surface flows from wet areas. Using a simple mass and isotopic balance approach, we compute that mineral dissolution rates in the soil (0.35 kg Mg ha-1 year-1) presently compensate for Mg losses from

  7. Synthesis report on thermally driven coupled processes

    SciTech Connect

    Hardin, E.L.

    1997-10-15

    The main purpose of this report is to document observations and data on thermally coupled processes for conditions that are expected to occur within and around a repository at Yucca Mountain. Some attempt is made to summarize values of properties (e.g., thermal properties, hydrologic properties) that can be measured in the laboratory on intact samples of the rock matrix. Variation of these properties with temperature, or with conditions likely to be encountered at elevated temperature in the host rock, is of particular interest. However, the main emphasis of this report is on direct observation of thermally coupled processes at various scales. Direct phenomenological observations are vitally important in developing and testing conceptual models. If the mathematical implementation of a conceptual model predicts a consequence that is not observed, either (1) the parameters or the boundary conditions used in the calculation are incorrect or (2) the conceptual basis of the model does not fit the experiment; in either case, the model must be revised. For example, the effective continuum model that has been used in thermohydrology studies combines matrix and fracture flow in a way that is equivalent to an assumption that water is imbibed instantaneously from fractures into adjacent, partially saturated matrix. Based on this approximation, the continuum-flow response that is analogous to fracture flow will not occur until the effective continuum is almost completely saturated. This approximation is not entirely consistent with some of the experimental data presented in this report. This report documents laboratory work and field studies undertaken in FY96 and FY97 to investigate thermally coupled processes such as heat pipes and fracture-matrix coupling. In addition, relevant activities from past years, and work undertaken outside the Yucca Mountain project are summarized and discussed. Natural and artificial analogs are also discussed to provide a convenient source of

  8. Abstraction of Drift-Scale Coupled Processes

    SciTech Connect

    N.D. Francis; D. Sassani

    2000-03-31

    This Analysis/Model Report (AMR) describes an abstraction, for the performance assessment total system model, of the near-field host rock water chemistry and gas-phase composition. It also provides an abstracted process model analysis of potentially important differences in the thermal hydrologic (TH) variables used to describe the performance of a geologic repository obtained from models that include fully coupled reactive transport with thermal hydrology and those that include thermal hydrology alone. Specifically, the motivation of the process-level model comparison between fully coupled thermal-hydrologic-chemical (THC) and thermal-hydrologic-only (TH-only) is to provide the necessary justification as to why the in-drift thermodynamic environment and the near-field host rock percolation flux, the essential TH variables used to describe the performance of a geologic repository, can be obtained using a TH-only model and applied directly into a TSPA abstraction without recourse to a fully coupled reactive transport model. Abstraction as used in the context of this AMR refers to an extraction of essential data or information from the process-level model. The abstraction analysis reproduces and bounds the results of the underlying detailed process-level model. The primary purpose of this AMR is to abstract the results of the fully-coupled, THC model (CRWMS M&O 2000a) for effects on water and gas-phase composition adjacent to the drift wall (in the near-field host rock). It is assumed that drift wall fracture water and gas compositions may enter the emplacement drift before, during, and after the heating period. The heating period includes both the preclosure, in which the repository drifts are ventilated, and the postclosure periods, with backfill and drip shield emplacement at the time of repository closure. Although the preclosure period (50 years) is included in the process models, the postclosure performance assessment starts at the end of this initial period

  9. Biogeochemical and Hydrological Heterogeneity and Emergent Archetypical Catchment Response Patterns

    NASA Astrophysics Data System (ADS)

    Jawitz, J. W.; Gall, H. E.; Rao, P. S.

    2014-12-01

    What can stream hydrologic and biogeochemical signals tell us about interactions among spatially heterogeneous hydrological and biogeochemical processes at the catchment-scale? We seek to understand how the spatial structure of solute sources coupled with both stationary and nonstationary hydroclimatic drivers affect observed archetypes of concentration-discharge (C-Q) patterns. These response patterns are the spatially integrated expressions of the spatiotemporal structure of solutes exported from managed catchments, and can provide insight into likely ecological consequences of receiving water bodies (e.g., wetlands, rivers, lakes, and coastal waters). We investigated the following broad questions: (1) How does the spatial correlation between the structure of flow-generating areas and biogeochemical source areas across a catchment evolve under stochastic hydro-climatic forcing? (2) What are the feasible hydrologic and biogeochemical responses that lead to the emergence of archetypical C-Q patterns? and; (3) What implications do these coupled dynamics have for catchment monitoring and implementation of management practices? We categorize the observed temporal signals into three archetypical C-Q patterns: dilution; accretion, and constant concentration. We applied a parsimonious stochastic model of heterogeneous catchments, which act as hydrologic and biogeochemical filters, to examine the relationship between spatial heterogeneity and temporal history of solute export signals. The core concept of the modeling framework is considering the type and degree of spatial correlation between solute source zones and flow generating zones, and activation of different portions of the catchments during rainfall events. Our overarching hypothesis is that each archetype C-Q pattern can be generated by explicitly linking landscape-scale hydrologic responses and spatial distributions of solute source properties within a catchment. We compared observed multidecadal data to

  10. Benthic exchange and biogeochemical cycling in permeable sediments.

    PubMed

    Huettel, Markus; Berg, Peter; Kostka, Joel E

    2014-01-01

    The sandy sediments that blanket the inner shelf are situated in a zone where nutrient input from land and strong mixing produce maximum primary production and tight coupling between water column and sedimentary processes. The high permeability of the shelf sands renders them susceptible to pressure gradients generated by hydrodynamic and biological forces that modulate spatial and temporal patterns of water circulation through these sediments. The resulting dynamic three-dimensional patterns of particle and solute distribution generate a broad spectrum of biogeochemical reaction zones that facilitate effective decomposition of the pelagic and benthic primary production products. The intricate coupling between the water column and sediment makes it challenging to quantify the production and decomposition processes and the resultant fluxes in permeable shelf sands. Recent technical developments have led to insights into the high biogeochemical and biological activity of these permeable sediments and their role in the global cycles of matter.

  11. Effects of Privately Owned Land Management Practices on Biogeochemical Cycling

    NASA Astrophysics Data System (ADS)

    Getson, J. M.; Hutyra, L.; Short, A. G.; Templer, P. H.; Kittredge, D.

    2014-12-01

    An increasing fraction of the global population lives in urban settings. Understanding how the human-natural system couple and decouple biogeochemical cycles across urbanization gradients is crucial for human health and environmental sustainability. Natural processes of nutrient deposition, export, uptake, and internal cycling can be disrupted by human activities. Residential landscape management (e.g. composting, leaf litter collection, fertilizer application) interrupts these natural biogeochemical cycles; therefore, it is key to characterize these practices and their impacts. This study looks at private land management practices along a rural to urban gradient in Boston, Massachusetts. We used a mail survey instrument coupled with biogeochemical measurements and remote sensing derived estimates of aboveground biomass to estimate biogeochemical modifications associated with residential landscape management practices. We find parcel size influences management behavior, management practices differ for leaf litter and lawn clippings, and fertilizer application is unrelated to parcel size or degree of urban-ness. These management practices result in nutrient redistribution that differs with residential characteristics.

  12. Biogeochemical processes at the fringe of a landfill leachate pollution plume: potential for dissolved organic carbon, Fe(II), Mn(II), NH 4, and CH 4 oxidation

    NASA Astrophysics Data System (ADS)

    van Breukelen, Boris M.; Griffioen, Jasper

    2004-09-01

    Various redox reactions may occur at the fringe of a landfill leachate plume, involving oxidation of dissolved organic carbon (DOC), CH 4, Fe(II), Mn(II), and NH 4 from leachate and reduction of O 2, NO 3 and SO 4 from pristine groundwater. Knowledge on the relevance of these processes is essential for the simulation and evaluation of natural attenuation (NA) of pollution plumes. The occurrence of such biogeochemical processes was investigated at the top fringe of a landfill leachate plume (Banisveld, the Netherlands). Hydrochemical depth profiles of the top fringe were captured via installation of a series of multi-level samplers at 18, 39 and 58 m downstream from the landfill. Ten-centimeter vertical resolution was necessary to study NA within a fringe as thin as 0.5 m. Bromide appeared an equally well-conservative tracer as chloride to calculate dilution of landfill leachate, and its ratio to chloride was high compared to other possible sources of salt in groundwater. The plume fringe rose steadily from a depth of around 5 m towards the surface with a few meters in the period 1998-2003. The plume uplift may be caused by enhanced exfiltration to a brook downstream from the landfill, due to increased precipitation over this period and an artificial lowering of the water level of the brook. This rise invoked cation exchange including proton buffering, and triggered degassing of methane. The hydrochemical depth profile was simulated in a 1D vertical reactive transport model using PHREEQC-2. Optimization using the nonlinear optimization program PEST brought forward that solid organic carbon and not clay minerals controlled retardation of cations. Cation exchange resulted in spatial separation of Fe(II), Mn(II) and NH 4 fronts from the fringe, and thereby prevented possible oxidation of these secondary redox species. Degradation of DOC may happen in the fringe zone. Re-dissolution of methane escaped from the plume and subsequent oxidation is an explanation for absence

  13. Afforestation Alters the Composition of Functional Genes in Soil and Biogeochemical Processes in South American Grasslands▿ †

    PubMed Central

    Berthrong, Sean T.; Schadt, Christopher W.; Piñeiro, Gervasio; Jackson, Robert B.

    2009-01-01

    Soil microbes are highly diverse and control most soil biogeochemical reactions. We examined how microbial functional genes and biogeochemical pools responded to the altered chemical inputs accompanying land use change. We examined paired native grasslands and adjacent Eucalyptus plantations (previously grassland) in Uruguay, a region that lacked forests before European settlement. Along with measurements of soil carbon, nitrogen, and bacterial diversity, we analyzed functional genes using the GeoChip 2.0 microarray, which simultaneously quantified several thousand genes involved in soil carbon and nitrogen cycling. Plantations and grassland differed significantly in functional gene profiles, bacterial diversity, and biogeochemical pool sizes. Most grassland profiles were similar, but plantation profiles generally differed from those of grasslands due to differences in functional gene abundance across diverse taxa. Eucalypts decreased ammonification and N fixation functional genes by 11% and 7.9% (P < 0.01), which correlated with decreased microbial biomass N and more NH4+ in plantation soils. Chitinase abundance decreased 7.8% in plantations compared to levels in grassland (P = 0.017), and C polymer-degrading genes decreased by 1.5% overall (P < 0.05), which likely contributed to 54% (P < 0.05) more C in undecomposed extractable soil pools and 27% less microbial C (P < 0.01) in plantation soils. In general, afforestation altered the abundance of many microbial functional genes, corresponding with changes in soil biogeochemistry, in part through altered abundance of overall functional gene types rather than simply through changes in specific taxa. Such changes in microbial functional genes correspond with altered C and N storage and have implications for long-term productivity in these soils. PMID:19700539

  14. Biogeochemical processing of nutrients in groundwater-fed stream during baseflow conditions - the value of fluorescence spectroscopy and automated high-frequency nutrient monitoring

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Heathwaite, Louise

    2014-05-01

    Recent research in groundwater-dominated streams indicates that organic matter plays an important role in nutrient transformations at the surface-groundwater interface known as the hyporheic zone. Mixing of water and nutrient fluxes in the hyporheic zone controls in-stream nutrients availability, dynamics and export to downstream reaches. In particular, benthic sediments can form adsorptive sinks for organic matter and reactive nutrients (nitrogen and phosphorus) that sustain a variety of hyporheic processes e.g. denitrification, microbial uptake. Thus, hyporheic metabolism can have an important effect on both quantity (concentration) and quality (labile vs. refractory character) of organic matter. Here high-frequency nutrient monitoring combined with spectroscopic analysis was used to provide insights into biogeochemical processing of a small, agricultural stream in the NE England subject to diffuse nutrient pollution. Biogeochemical data were collected hourly for a week at baseflow conditions when in-stream-hyporheic nutrient dynamics have the greatest impact on stream health. In-stream nutrients (total phosphorus, reactive phosphorus, nitrate nitrogen) and water quality parameters (turbidity, specific conductivity, pH, temperature, dissolved oxygen, redox potential) were measured in situ hourly by an automated bank-side laboratory. Concurrent hourly autosamples were retrieved daily and analysed for nutrients and fine sediments including spectroscopic analyses of dissolved organic matter - excitation-emission matrix (EEM) fluorescence spectroscopy and ultraviolet-visible (UV-Vis) absorbance spectroscopy. Our results show that organic matter can potentially be utilised as a natural, environmental tracer of the biogeochemical processes occurring at the surface-groundwater interface in streams. High-frequency spectroscopic characterisation of in-stream organic matter can provide useful quantitative and qualitative information on fluxes of reactive nutrients in

  15. Coupling Processes Between Atmospheric Chemistry and Climate

    NASA Technical Reports Server (NTRS)

    Ko, M. K. W.; Weisenstein, Debra; Shia, Run-Lie; Sze, N. D.

    1998-01-01

    The overall objective of this project is to improve the understanding of coupling processes between atmospheric chemistry and climate. Model predictions of the future distributions of trace gases in the atmosphere constitute an important component of the input necessary for quantitative assessments of global change. We will concentrate on the changes in ozone and stratospheric sulfate aerosol, with emphasis on how ozone in the lower stratosphere would respond to natural or anthropogenic changes. The key modeling tools for this work are the AER two-dimensional chemistry-transport model, the AER two-dimensional stratospheric sulfate model, and the AER three-wave interactive model with full chemistry. We will continue developing our three-wave model so that we can help NASA determine the strength and weakness of the next generation assessment models.

  16. Coupling Processes Between Atmospheric Chemistry and Climate

    NASA Technical Reports Server (NTRS)

    Ko, Malcolm K. W.; Weisenstein, Debra; Shia, Run-Lie; Sze, N. D.

    1998-01-01

    The overall objective of this project is to improve the understanding of coupling processes between atmospheric chemistry and climate. Model predictions of the future distributions of trace gases in the atmosphere constitute an important component of the input necessary for quantitative assessments of global change. We will concentrate on the changes in ozone and stratospheric sulfate aerosol, with emphasis on how ozone in the lower stratosphere would respond to natural or anthropogenic changes. The key modeling tools for this work are the AER 2-dimensional chemistry-transport model, the AER 2-dimensional stratospheric sulfate model, and the AER three-wave interactive model with full chemistry. We will continue developing our three-wave model so that we can help NASA determine the strength and weakness of the next generation assessment models.

  17. Coupling Processes Between Atmospheric Chemistry and Climate

    NASA Technical Reports Server (NTRS)

    Ko, Malcolm K. W.; Weisenstein, Debra; Rodriguez, Jose; Danilin, Michael; Scott, Courtney; Shia, Run-Lie; Eluszkiewicz, Junusz; Sze, Nien-Dak

    1999-01-01

    This is the final report. The overall objective of this project is to improve the understanding of coupling processes among atmospheric chemistry, aerosol and climate, all important for quantitative assessments of global change. Among our priority are changes in ozone and stratospheric sulfate aerosol, with emphasis on how ozone in the lower stratosphere would respond to natural or anthropogenic changes. The work emphasizes two important aspects: (1) AER's continued participation in preparation of, and providing scientific input for, various scientific reports connected with assessment of stratospheric ozone and climate. These include participation in various model intercomparison exercises as well as preparation of national and international reports. and (2) Continued development of the AER three-wave interactive model to address how the transport circulation will change as ozone and the thermal properties of the atmosphere change, and assess how these new findings will affect our confidence in the ozone assessment results.

  18. Coupling Processes between Atmospheric Chemistry and Climate

    NASA Technical Reports Server (NTRS)

    Ko, M. K. W.; Weisenstein, Debra; Shia, Run-Lie; Sze, N. D.

    1998-01-01

    This is the third semi-annual report for NAS5-97039, covering January through June 1998. The overall objective of this project is to improve the understanding of coupling processes between atmospheric chemistry and climate. Model predictions of the future distributions of trace gases in the atmosphere constitute an important component of the input necessary for quantitative assessments of global change. We will concentrate on the changes in ozone and stratospheric sulfate aerosol, with emphasis on how ozone in the lower stratosphere would respond to natural or anthropogenic changes. The key modeling for this work are the AER 2-dimensional chemistry-transport model, the AER 2-dimensional stratospheric sulfate model, and the AER three-wave interactive model with full chemistry. We will continue developing our three-wave model so that we can help NASA determine the strengths and weaknesses of the next generation assessment models.

  19. Planetary Biogeochemical Stewardship (Invited)

    NASA Astrophysics Data System (ADS)

    Schlesinger, W. H.

    2010-12-01

    Many of today’s most pressing environmental problems have a basis in chemistry—that is human disruption of global biogeochemical cycles. Humans have enhanced the movement of C, N, P, and S in the global cycle of these elements, with widespread consequences such as climate change, hypoxia and acid rain. Recent attempts to calculate thresholds of global vulnerability ignore ample evidence that human impacts on the Earth’s chemical environment yield progressive degradation of the biosphere, especially its species diversity. Our collect global impact now exceeds natural processes of planetary remediation—clearly an unsustainable path. I will attempt to provide a framework to evaluate suggested attempts to mitigate current human impact on global biogeochemical cycles. Cap-and-trade systems are ideal for perturbations that involve a limited number of point sources that supplement a small background flux to the atmosphere, such as S. Better land management may be the most attractive way to mitigate human impacts to the Nitrogen cycle, where the potential for enhanced denitrification could respond to the order-of-magnitude of the current human perturbation. Impacts to the carbon cycle, seen through rising CO2 in Earth’s atmosphere, will require switching to energy that does not depend on fossil carbon.

  20. 129I/(127)I as a new environmental tracer or geochronometer for biogeochemical or hydrodynamic processes in the hydrosphere and geosphere: the central role of organo-iodine.

    PubMed

    Santschi, Peter H; Schwehr, Kathleen A

    2004-04-01

    Iodine is a biophilic element, with several short-lived isotopes (e.g. (131)I, t(1/2)=8 days), one long-lived isotope, (129)I (t(1/2)=15.6 million years) and one stable isotope, (127)I. The inventory of (129)I in surface environments has been overwhelmed by anthropogenic releases over the past 50 years. Iodine and its isotopes are important for a number of reasons: (1) The largest fraction of the short-term and long-term dose from accidental releases and fallout from atomic bomb tests was from iodine isotopes. (2) (129)I is one of the two long-lived nuclides with highest mobility in stored radioactive waste. (3) (129)I could provide the scientific community with a new geochemical tracer and new geochronological applications in environmental science. (4) A better assessment of iodine deficiency disorders, mineralization in exploration geochemistry, and the transfer of volatile organic greenhouse-active and ozone-destroying iodine species from the oceans to the atmosphere is needed. One of the most promising future applications for the (129)I/(127)I ratio is not only as a new geochronometer, but also as a new source tracer for terrestrial organic matter with ages of 50 years or less. This is especially attractive, since radiocarbon can be, at times, an ambiguous chronometer for the 50-year time-scale, whereas (129)I concentrations during this time are overwhelming previous levels by orders of magnitude. Iodine is to a significant extent involved in the cycle of organic matter in all surface environments. Its biophilic nature is demonstrated by a relative enrichment of iodine in seaweed and dissolved macromolecular organic matter. Because of the close coupling of iodine and organic carbon cycles, our understanding of the underlying molecular mechanisms of the processes regulating iodination reactions in aquatic systems is still limited. The binding of iodine by organic matter has the potential to modify the transport, bioavailability and transfer of iodine isotopes to

  1. Modeling greenhouse gas emissions (CO2, N2O, CH4) from managed arable soils with a fully coupled hydrology-biogeochemical modeling system simulating water and nutrient transport and associated carbon and nitrogen cycling at catchment scale

    NASA Astrophysics Data System (ADS)

    Klatt, Steffen; Haas, Edwin; Kraus, David; Kiese, Ralf; Butterbach-Bahl, Klaus; Kraft, Philipp; Plesca, Ina; Breuer, Lutz; Zhu, Bo; Zhou, Minghua; Zhang, Wei; Zheng, Xunhua; Wlotzka, Martin; Heuveline, Vincent

    2014-05-01

    The use of mineral nitrogen fertilizer sustains the global food production and therefore the livelihood of human kind. The rise in world population will put pressure on the global agricultural system to increase its productivity leading most likely to an intensification of mineral nitrogen fertilizer use. The fate of excess nitrogen and its distribution within landscapes is manifold. Process knowledge on the site scale has rapidly grown in recent years and models have been developed to simulate carbon and nitrogen cycling in managed ecosystems on the site scale. Despite first regional studies, the carbon and nitrogen cycling on the landscape or catchment scale is not fully understood. In this study we present a newly developed modelling approach by coupling the fully distributed hydrology model CMF (catchment modelling framework) to the process based regional ecosystem model LandscapeDNDC for the investigation of hydrological processes and carbon and nitrogen transport and cycling, with a focus on nutrient displacement and resulting greenhouse gas emissions in a small catchment at the Yanting Agro-ecological Experimental Station of Purple Soil, Sichuan province, China. The catchment hosts cypress forests on the outer regions, arable fields on the sloping croplands cultivated with wheat-maize rotations and paddy rice fields in the lowland. The catchment consists of 300 polygons vertically stratified into 10 soil layers. Ecosystem states (soil water content and nutrients) and fluxes (evapotranspiration) are exchanged between the models at high temporal scales (hourly to daily) forming a 3-dimensional model application. The water flux and nutrients transport in the soil is modelled using a 3D Richards/Darcy approach for subsurface fluxes with a kinematic wave approach for surface water runoff and the evapotranspiration is based on Penman-Monteith. Biogeochemical processes are modelled by LandscapeDNDC, including soil microclimate, plant growth and biomass allocation

  2. Processes of Change in Self-Directed Couple Relationship Education

    ERIC Educational Resources Information Center

    Wilson, Keithia L.; Halford, W. Kim

    2008-01-01

    The current study examined the learning processes involved in professionally supported self-directed couple relationship education (CRE). Fifty-nine couples completed Couple CARE, a systematic, self-directed CRE program designed in flexible delivery mode to be completed at home. Couples watched a DVD introducing key relationship ideas and skills…

  3. Genome-Enabled Modeling of Biogeochemical Processes Predicts Metabolic Dependencies that Connect the Relative Fitness of Microbial Functional Guilds

    NASA Astrophysics Data System (ADS)

    Brodie, E.; King, E.; Molins, S.; Karaoz, U.; Steefel, C. I.; Banfield, J. F.; Beller, H. R.; Anantharaman, K.; Ligocki, T. J.; Trebotich, D.

    2015-12-01

    Pore-scale processes mediated by microorganisms underlie a range of critical ecosystem services, regulating carbon stability, nutrient flux, and the purification of water. Advances in cultivation-independent approaches now provide us with the ability to reconstruct thousands of genomes from microbial populations from which functional roles may be assigned. With this capability to reveal microbial metabolic potential, the next step is to put these microbes back where they belong to interact with their natural environment, i.e. the pore scale. At this scale, microorganisms communicate, cooperate and compete across their fitness landscapes with communities emerging that feedback on the physical and chemical properties of their environment, ultimately altering the fitness landscape and selecting for new microbial communities with new properties and so on. We have developed a trait-based model of microbial activity that simulates coupled functional guilds that are parameterized with unique combinations of traits that govern fitness under dynamic conditions. Using a reactive transport framework, we simulate the thermodynamics of coupled electron donor-acceptor reactions to predict energy available for cellular maintenance, respiration, biomass development, and enzyme production. From metagenomics, we directly estimate some trait values related to growth and identify the linkage of key traits associated with respiration and fermentation, macromolecule depolymerizing enzymes, and other key functions such as nitrogen fixation. Our simulations were carried out to explore abiotic controls on community emergence such as seasonally fluctuating water table regimes across floodplain organic matter hotspots. Simulations and metagenomic/metatranscriptomic observations highlighted the many dependencies connecting the relative fitness of functional guilds and the importance of chemolithoautotrophic lifestyles. Using an X-Ray microCT-derived soil microaggregate physical model combined

  4. Coupling Processes Between Atmospheric Chemistry and Climate

    NASA Technical Reports Server (NTRS)

    Ko, Malcolm; Weisenstein, Debra; Rodriquez, Jose; Danilin, Michael; Scott, Courtney; Shia, Run-Lie; Eluszkiewicz, Janusz; Sze, Nien-Dak; Stewart, Richard W. (Technical Monitor)

    1999-01-01

    This is the final report for NAS5-97039 for work performed between December 1996 and November 1999. The overall objective of this project is to improve the understanding of coupling processes among atmospheric chemistry, aerosol and climate, all important for quantitative assessments of global change. Among our priority are changes in ozone and stratospheric sulfate aerosol, with emphasis on how ozone in the lower stratosphere would respond to natural or anthropogenic changes. The work emphasizes two important aspects: (1) AER's continued participation in preparation of, and providing scientific input for, various scientific reports connected with assessment of stratospheric ozone and climate. These include participation in various model intercomparison exercises as well as preparation of national and international reports. (2) Continued development of the AER three-wave interactive model to address how the transport circulation will change as ozone and the thermal properties of the atmosphere change, and assess how these new findings will affect our confidence in the ozone assessment results.

  5. Coupling Processes between Atmospheric Chemistry and Climate

    NASA Technical Reports Server (NTRS)

    Ko, Malcolm K. W.; Weisenstein, Debra K.; Shia, Run-Lie; Scott, Courtney J.; Sze, Nien Dak

    1998-01-01

    This is the fourth semi-annual report for NAS5-97039, covering the time period July through December 1998. The overall objective of this project is to improve the understanding of coupling processes between atmospheric chemistry and climate. Model predictions of the future distributions of trace gases in the atmosphere constitute an important component of the input necessary for quantitative assessments of global change. We will concentrate on the changes in ozone and stratospheric sulfate aerosol, with emphasis on how ozone in the lower stratosphere would respond to natural or anthropogenic changes. The key modeling tools for this work are the Atmospheric and Environmental Research (AER) two-dimensional chemistry-transport model, the AER two-dimensional stratospheric sulfate model, and the AER three-wave interactive model with full chemistry. For this six month period, we report on a modeling study of new rate constant which modify the NOx/NOy ratio in the lower stratosphere; sensitivity to changes in stratospheric water vapor in the future atmosphere; a study of N2O and CH4 observations which has allowed us to adjust diffusion in the 2-D CTM in order to obtain appropriate polar vortex isolation; a study of SF6 and age of air with comparisons of models and measurements; and a report on the Models and Measurements II effort.

  6. Coupling Processes Between Atmospheric Chemistry and Climate

    NASA Technical Reports Server (NTRS)

    Ko, M. K. W.; Weisenstein, Debra; Shia, Run-Li; Sze, N. D.

    1997-01-01

    This is the first semi-annual report for NAS5-97039 summarizing work performed for January 1997 through June 1997. Work in this project is related to NAS1-20666, also funded by NASA ACMAP. The work funded in this project also benefits from work at AER associated with the AER three-dimensional isentropic transport model funded by NASA AEAP and the AER two-dimensional climate-chemistry model (co-funded by Department of Energy). The overall objective of this project is to improve the understanding of coupling processes between atmospheric chemistry and climate. Model predictions of the future distributions of trace gases in the atmosphere constitute an important component of the input necessary for quantitative assessments of global change. We will concentrate on the changes in ozone and stratospheric sulfate aerosol, with emphasis on how ozone in the lower stratosphere would respond to natural or anthropogenic changes. The key modeling tools for this work are the AER two-dimensional chemistry-transport model, the AER two-dimensional stratospheric sulfate model, and the AER three-wave interactive model with full chemistry.

  7. Up-scaling of process-based eco-hydrology model to global scale for identification of hot spots in boundless biogeochemical cycles

    NASA Astrophysics Data System (ADS)

    Nakayama, T.; Maksyutov, S. S.

    2013-12-01

    Recent research shows inland water may play some role in continental biogeochemical cycling though its contribution has remained uncertain due to a paucity of data (Battin et al. 2009). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which includes surface-groundwater interactions and down-scaling process from regional to local simulation with finer resolution, and can simulate iteratively nonlinear feedback between hydrologic, geomorphic, and ecological processes in east Asia. In this study, NICE was further extended to implement map factor and non-uniform grid through up-scaling process of coordinate transformation from rectangular to longitude-latitude system applicable to global scale. This improved model was applied to several basins in Eurasia to evaluate the impact of coordinate transformation on eco-hydrological changes. Simulated eco-hydrological process after up-scaling corresponded reasonably to that in the original there after evaluating the effect of different latitude. Then, the model was expanded to evaluate global hydrologic cycle by using various global datasets. The simulated result agreed reasonably with that in the previous research (Fan et al., 2013) and extended to clarify further eco-hydrological process in global scale. This simulation system would play important role in identification of spatio-temporal hot spots in boundless biogeochemical cycle along terrestrial-aquatic continuum for global environmental change (Cole et al. 2007; Battin et al. 2009; Frei et al. 2012).

  8. Biogeochemical modeling at mass extinction boundaries

    NASA Technical Reports Server (NTRS)

    Rampino, M. R.; Caldeira, K. G.

    1991-01-01

    The causes of major mass extinctions is a subject of considerable interest to those concerned with the history and evolution of life on earth. The primary objectives of the proposed plan of research are: (1) to develop quantitative time-dependent biogeochemical cycle models, coupled with an ocean atmosphere in order to improve the understanding of global scale physical, chemical, and biological processes that control the distribution of elements important for life at times of mass extinctions; and (2) to develop a comprehensive data base of the best available geochemical, isotopic, and other relevant geologic data from sections across mass extinction boundaries. These data will be used to constrain and test the biogeochemical model. These modeling experiments should prove useful in: (1) determining the possible cause(s) of the environmental changes seen at bio-event boundaries; (2) identifying and quantifying little-known feedbacks among the oceans, atmosphere, and biosphere; and (3) providing additional insights into the possible responses of the earth system to perturbations of various timescales. One of the best known mass extinction events marks the Cretaceous/Tertiary (K/T) boundary (66 Myr ago). Data from the K/T boundary are used here to constrain a newly developed time-dependent biogeochemical cycle model that is designed to study transient behavior of the earth system. Model results predict significant fluctuations in ocean alkalinity, atmospheric CO2, and global temperatures caused by extinction of calcareous plankton and reduction in the sedimentation rates of pelagic carbonates and organic carbon. Oxygen-isotome and other paleoclimatic data from K/T time provide some evidence that such climatic fluctuations may have occurred, but stabilizing feedbacks may have acted to reduce the ocean alkalinity and carbon dioxide fluctuations.

  9. Reappraisal of soil C storage processes. The controversy on structural diversity of humic substances as biogeochemical driver for soil C fluxes

    NASA Astrophysics Data System (ADS)

    Almendros, Gonzalo; Gonzalez-Vila, Francisco J.; Gonzalez-Perez, Jose Antonio; Knicker, Heike

    2016-04-01

    The functional relationships between the macromolecular structure of the humic substances (HS) and a series of biogeochemical processes related with the C sequestration performance in soils have been recently questioned. In this communication we collect recent data from a wide array of different ecosystems where the C storage in soils has been studied and explained as a possible cause-to-effect relationship or has been found significantly correlated (multivariate statistical models) with a series of structural characteristics of humic materials. The study of humic materials has methodological analytical limitations that are derived from its complex, chaotic and not completely understood structure, that reflects its manifold precursors as well as the local impact of environmental/depositional factors. In this work we attempt to design an exploratory, multiomic approach based on the information provided by the molecular characterization of the soil organic matter (SOM). Massive data harvesting was carried out of statistical variables, to infer biogeochemical proxies (spectroscopic, chromatographic, mass spectrometric quantitative descriptors). The experimental data were acquired from advanced instrumental methodologies, viz, analytical pyrolysis, compound-specific stable isotope analysis (CSIA), derivative infrared (FTIR) spectroscopy, solid-state C-13 and N-15 nuclear magnetic resonance (NMR) and mass spectrometry (MS) data after direct injection (thermoevaporation), previous pyrolysis, or ion averaging of specific m/z ranges from classical GC/MS chromatograms. In the transversal exploratory analysis of the multianalytical information, the data were coded for on-line processing in a stage in which there is no need for interpretation, in molecular or structural terms, of the quantitative data consisting of e.g., peak intensities, signal areas, chromatographic (GC) total abundances, etc. A series of forecasting chemometric approaches (aiming to express SOM

  10. A new post-processing tool for the source-related element tracing in biogeochemical models: A case study for the North Sea

    NASA Astrophysics Data System (ADS)

    Große, Fabian; Kreus, Markus; Pätsch, Johannes

    2015-04-01

    The mitigation of eutrophication and its concomitants, like harmful algal blooms or deoxygenation of bottom waters, is one of the major aspects of the ecological management of coastal marine ecosystems. In the past, biogeochemical models helped to significantly improve the understanding of the interaction of the physical and biological processes behind eutrophication. Nevertheless, the quantification of the influence of source-related nutrient inputs to eutrophication in a specific region remains an important issue, since it is as crucial for an efficient management as it is difficult to obtain. About a decade ago, a method applicable to biogeochemical models had been developed allowing for the tracing of elements from different sources, e.g. phosphorus and/or nitrogen from two different rivers, throughout the whole process chain of the applied model. This tracing method - often referred to as 'trans-boundary nutrient transport' (TBNT) - provides additional information about the contributions from different sources to the overall amount ('bulk') of an element in each part of the model domain. This information constitutes the basis for the quantification, evaluation and optimisation of nutrient reduction targets for the tributaries of a marine ecosystem. In the meantime, the TBNT method has been applied to a variety of different biogeochemical models, e.g. to quantify the influence of nutrient loads from different rivers or atmospheric deposition on phytoplankton blooms or to determine the source-related composition of total nitrogen in different parts of an ecosystem. However, for all of these applications the method was directly implemented into the considered model, and thus was model-dependent and required an individual solution to deal with the model specifics like grid structure, programming language etc. For the application of the TBNT method to the ECOHAM model (ECOlogical model HAMburg), we further developed the approach by creating a post-processing

  11. Seasonal baseline of nutrients and stable isotopes in a saline lake of Argentina: biogeochemical processes and river runoff effects.

    PubMed

    Kopprio, Germán A; Kattner, Gerhard; Freije, R Hugo; de Paggi, Susana José; Lara, Rubén J

    2014-05-01

    The seasonal variability of inorganic and organic nutrients and stable isotopes and their relations with plankton and environmental conditions were monitored in Lake Chasicó. Principal component analysis evidenced the strong influence of the river runoff on several biogeochemical variables. Silicate concentrations were controlled by diatom biomass and river discharge. Higher values of nitrate and soluble reactive phosphorus (SRP) indicated agricultural uses in the river basin. Elevated pH values (∼ 9) inhibiting nitrification in the lake explained partially the dominance of ammonium: ∼ 83 % of dissolved inorganic nitrogen (DIN). The low DIN/SRP ratio inferred nitrogen limitation, although the hypotheses of iron and CO2 limitation are relevant in alkaline lakes. Particulate organic matter (POM) and dissolved organic matter (DOM) were mainly of autochthonous origin. The main allochthonous input was imported by the river as POM owning to the arid conditions. Dissolved organic carbon was likely top-down regulated by the bacterioplankton grazer Brachionus plicatilis. The δ(13)C signature was a good indicator of primary production and its values were influenced probably by CO2 limitation. The δ(15)N did not evidence nitrogen fixation and suggested the effects of anthropogenic activities. The preservation of a good water quality in the lake is crucial for resource management.

  12. Numerical simulation of in-situ chemical oxidation (ISCO) and biodegradation of petroleum hydrocarbons using a coupled model for bio-geochemical reactive transport

    NASA Astrophysics Data System (ADS)

    Marin, I. S.; Molson, J. W.

    2013-05-01

    Petroleum hydrocarbons (PHCs) are a major source of groundwater contamination, being a worldwide and well-known problem. Formed by a complex mixture of hundreds of organic compounds (including BTEX - benzene, toluene, ethylbenzene and xylenes), many of which are toxic and persistent in the subsurface and are capable of creating a serious risk to human health. Several remediation technologies can be used to clean-up PHC contamination. In-situ chemical oxidation (ISCO) and intrinsic bioremediation (IBR) are two promising techniques that can be applied in this case. However, the interaction of these processes with the background aquifer geochemistry and the design of an efficient treatment presents a challenge. Here we show the development and application of BIONAPL/Phreeqc, a modeling tool capable of simulating groundwater flow, contaminant transport with coupled biological and geochemical processes in porous or fractured porous media. BIONAPL/Phreeqc is based on the well-tested BIONAPL/3D model, using a powerful finite element simulation engine, capable of simulating non-aqueous phase liquid (NAPL) dissolution, density-dependent advective-dispersive transport, and solving the geochemical and kinetic processes with the library Phreeqc. To validate the model, we compared BIONAPL/Phreeqc with results from the literature for different biodegradation processes and different geometries, with good agreement. We then used the model to simulate the behavior of sodium persulfate (NaS2O8) as an oxidant for BTEX degradation, coupled with sequential biodegradation in a 2D case and to evaluate the effect of inorganic geochemistry reactions. The results show the advantages of a treatment train remediation scheme based on ISCO and IBR. The numerical performance and stability of the integrated BIONAPL/Phreeqc model was also verified.

  13. Subsurface Uranium Fate and Transport: Integrated Experiments and Modeling of Coupled Biogeochemical Mechanisms of Nanocrystalline Uraninite Oxidation by Fe(III)-(hydr)oxides - Project Final Report

    SciTech Connect

    Peyton, Brent M.; Timothy, Ginn R.; Sani, Rajesh K.

    2013-08-14

    Subsurface bacteria including sulfate reducing bacteria (SRB) reduce soluble U(VI) to insoluble U(IV) with subsequent precipitation of UO2. We have shown that SRB reduce U(VI) to nanometer-sized UO2 particles (1-5 nm) which are both intra- and extracellular, with UO2 inside the cell likely physically shielded from subsequent oxidation processes. We evaluated the UO2 nanoparticles produced by Desulfovibrio desulfuricans G20 under growth and non-growth conditions in the presence of lactate or pyruvate and sulfate, thiosulfate, or fumarate, using ultrafiltration and HR-TEM. Results showed that a significant mass fraction of bioreduced U (35-60%) existed as a mobile phase when the initial concentration of U(VI) was 160 µM. Further experiments with different initial U(VI) concentrations (25 - 900 M) in MTM with PIPES or bicarbonate buffers indicated that aggregation of uraninite depended on the initial concentrations of U(VI) and type of buffer. It is known that under some conditions SRB-mediated UO2 nanocrystals can be reoxidized (and thus remobilized) by Fe(III)-(hydr)oxides, common constituents of soils and sediments. To elucidate the mechanism of UO2 reoxidation by Fe(III) (hydr)oxides, we studied the impact of Fe and U chelating compounds (citrate, NTA, and EDTA) on reoxidation rates. Experiments were conducted in anaerobic batch systems in PIPES buffer. Results showed EDTA significantly accelerated UO2 reoxidation with an initial rate of 9.5 M day-1 for ferrihydrite. In all cases, bicarbonate increased the rate and extent of UO2 reoxidation with ferrihydrite. The highest rate of UO2 reoxidation occurred when the chelator promoted UO2 and Fe(III) (hydr)oxide dissolution as demonstrated with EDTA. When UO2 dissolution did not occur, UO2 reoxidation likely proceeded through an aqueous Fe(III) intermediate as observed for both NTA and

  14. Integrated water system simulation by considering hydrological and biogeochemical processes: model development, with parameter sensitivity and autocalibration

    NASA Astrophysics Data System (ADS)

    Zhang, Y. Y.; Shao, Q. X.; Ye, A. Z.; Xing, H. T.; Xia, J.

    2016-02-01

    Integrated water system modeling is a feasible approach to understanding severe water crises in the world and promoting the implementation of integrated river basin management. In this study, a classic hydrological model (the time variant gain model: TVGM) was extended to an integrated water system model by coupling multiple water-related processes in hydrology, biogeochemistry, water quality, and ecology, and considering the interference of human activities. A parameter analysis tool, which included sensitivity analysis, autocalibration and model performance evaluation, was developed to improve modeling efficiency. To demonstrate the model performances, the Shaying River catchment, which is the largest highly regulated and heavily polluted tributary of the Huai River basin in China, was selected as the case study area. The model performances were evaluated on the key water-related components including runoff, water quality, diffuse pollution load (or nonpoint sources) and crop yield. Results showed that our proposed model simulated most components reasonably well. The simulated daily runoff at most regulated and less-regulated stations matched well with the observations. The average correlation coefficient and Nash-Sutcliffe efficiency were 0.85 and 0.70, respectively. Both the simulated low and high flows at most stations were improved when the dam regulation was considered. The daily ammonium-nitrogen (NH4-N) concentration was also well captured with the average correlation coefficient of 0.67. Furthermore, the diffuse source load of NH4-N and the corn yield were reasonably simulated at the administrative region scale. This integrated water system model is expected to improve the simulation performances with extension to more model functionalities, and to provide a scientific basis for the implementation in integrated river basin managements.

  15. A dynamic marine iron cycle module coupled to the University of Victoria Earth System Model: the Kiel Marine Biogeochemical Model 2 (KMBM2) for UVic 2.9

    NASA Astrophysics Data System (ADS)

    Nickelsen, L.; Keller, D. P.; Oschlies, A.

    2014-12-01

    Marine biological production and the associated biotic uptake of carbon in many ocean regions depend on the availability of nutrients in the euphotic zone. While large areas are limited by nitrogen and/or phosphorus, the micronutrient iron is considered the main limiting nutrient in the North Pacific, equatorial Pacific and Southern Ocean. Changes in iron availability via changes in atmospheric dust input are discussed to play an important role in glacial/interglacial cycles via climate feedbacks caused by changes in biological ocean carbon sequestration. Although many aspects of the iron cycle remain unknown, its incorporation into marine biogeochemical models is needed to test our current understanding and better constrain its role in the Earth system. In the University of Victoria Earth System Climate Model (UVic) iron limitation in the ocean was, until now, simulated pragmatically with an iron concentration masking scheme that did not allow a consistent interactive response to perturbations of ocean biogeochemistry or iron cycling sensitivity studies. Here, we replace the iron masking scheme with a dynamic iron cycle and compare the results to available observations and the previous marine biogeochemical model. Sensitivity studies are also conducted with the new model to test the importance of considering the variable solubility of iron in dust deposition, the importance of considering high resolution bathymetry for the sediment release of iron, the effect of scaling the sedimentary iron release with temperature and the sensitivity of the iron cycle to a climate change scenario.

  16. Impact of dust on biogeochemical processes in the East Mediterranean Sea, lessons from on-board microcosm and land-based mesocosm experiments

    NASA Astrophysics Data System (ADS)

    Herut, Barak; Pitta, Paraskevi; Mihalopoulos, Nikos; Tsagaraki, Tatiana; Rahav, Eyal; Berman-Frank, Ilana; Psarra, Stella; Giannakourou, Antonia; Tsiola, Anastasia; Shi, Zongbo; Tanaka, Tsuneo; Kocak, Mustafa; Yucel, Nebil; Liu, Hongbin; Louiza Pedrotti, Maria; Tsapakis, Manolis; Violaki, Kalliopi; Fernandez, MariLuz; Meador, Travis; Panagiotopoulos, Christos

    2014-05-01

    Recent on-board microcosm and land-based mesocosm experiments in the oligotrophic Eastern Mediterranean Sea (EMS) indicates a significant role of Mediterranean aerosols as a net supplier of macro and micro nutrients (N, P, Fe and other trace metals) to the Low Nutrient Low Chlorophyll EMS. In such ultra-oligotrophic environment the leachable nutrients from dry atmospheric inputs add significant quantities of nutrients and become rapidly (<2hrs) bioavailable influencing substantially biogeochemical processes. Experimental additions triggered an increase in several of the performed rate and state variables as bacterial production and abundance, primary production rates and chlorophyll a (or other phytopigments), abundance of certain pico and nanophytoplankton groups and nitrogen fixation rates. Understanding these relationships is important to follow the pathways of N, P (and C) into the EMS food web and the future climate- and human-induced changes in the EMS.

  17. Treatment of oil and grease in produced water by a pilot-scale constructed wetland system using biogeochemical processes.

    PubMed

    Pardue, Michael J; Castle, James W; Rodgers, John H; Huddleston, George M

    2014-05-01

    Constructed wetland treatment systems (CWTSs) can effectively remove many constituents that limit beneficial use of oilfield produced water. The objectives of this investigation were: (1) to assess the effect of mass loadings of oil and grease (O & G) on treatment performance in pilot-scale subsurface flow and free water surface CWTS series having sequential reducing and oxidizing cells, and (2) to evaluate effects on treatment performance of adding a pilot-scale oil-water separator. Increase in O & G mass loading from 5 to 20 mg min(-1) caused decreases in both dissolved oxygen concentration and sediment redox potential, which affected treatment performance. Biogeochemical pathways for removal of O & G, iron, and manganese operate under oxidizing conditions, and removal rate coefficients for these constituents decreased (0.905-0.514 d(-1) for O & G, 0.773-0.452 d(-1) for iron, and 0.970-0.518 d(-1) for manganese) because greater mass loading of O & G promoted reducing conditions. With increased mass loading, removal rate coefficients for nickel and zinc increased from 0.074 to 0.565 d(-1) and from 0.196 to 1.08 d(-1), respectively. Although the sequential reducing and oxidizing cells in the CWTS were very effective in treating the targeted constituents, an oil-water separator was added prior to wetland cells to enhance O & G removal at high inflow concentration (100 mg L(-1)). The oil-water separator removed approximately 50% of the O & G, and removal extents and efficiencies approximated those observed at 50 mg L(-1) inflow concentration during treatment without an oil-water separator.

  18. Using complex resistivity imaging to infer biogeochemical processes associated with bioremediation of a uranium-contaminated aquifer

    SciTech Connect

    Orozco, A. Flores; Williams, K.H.; Long, P.E.; Hubbard, S.S.; Kemna, A.

    2011-04-01

    Experiments at the Department of Energy's Rifle Integrated Field Research Challenge (IFRC) site near Rifle, Colorado (USA) have demonstrated the ability to remove uranium from groundwater by stimulating the growth and activity of Geobacter species through acetate amendment. Prolonging the activity of these strains in order to optimize uranium bioremediation has prompted the development of minimally-invasive and spatially-extensive monitoring methods diagnostic of their in situ activity and the end products of their metabolism. Here we demonstrate the use of complex resistivity imaging for monitoring biogeochemical changes accompanying stimulation of indigenous aquifer microorganisms during and after a prolonged period (100+ days) of acetate injection. A thorough raw-data statistical analysis of discrepancies between normal and reciprocal measurements and incorporation of a new power-law phase-error model in the inversion were used to significantly improve the quality of the resistivity phase images over those obtained during previous monitoring experiments at the Rifle IRFC site. The imaging results reveal spatiotemporal changes in the phase response of aquifer sediments, which correlate with increases in Fe(II) and precipitation of metal sulfides (e.g., FeS) following the iterative stimulation of iron and sulfate reducing microorganism. Only modest changes in resistivity magnitude were observed over the monitoring period. The largest phase anomalies (>40 mrad) were observed hundreds of days after halting acetate injection, in conjunction with accumulation of Fe(II) in the presence of residual FeS minerals, reflecting preservation of geochemically reduced conditions in the aquifer - a prerequisite for ensuring the long-term stability of immobilized, redox-sensitive contaminants, such as uranium.

  19. Using complex resistivity imaging to infer biogeochemical processes associated with bioremediation of a uranium-contaminated aquifer

    SciTech Connect

    Flores-Orozco, Adrian; Williams, Kenneth H.; Long, Philip E.; Hubbard, Susan S.; Kemna, Andreas

    2011-07-07

    Experiments at the Department of Energy’s Rifle Integrated Field Research Challenge (IFRC) site near Rifle, Colorado (USA) have demonstrated the ability to remove uranium from groundwater by stimulating the growth and activity of Geobacter species through acetate amendment. Prolonging the activity of these strains in order to optimize uranium bioremediation has prompted the development of minimally-invasive and spatially-extensive monitoring methods diagnostic of their in situ activity and the end products of their metabolism. Here we demonstrate the use of complex resistivity imaging for monitoring biogeochemical changes accompanying stimulation of indigenous aquifer microorganisms during and after a prolonged period (100+ days) of acetate injection. A thorough raw-data statistical analysis of discrepancies between normal and reciprocal measurements and incorporation of a new power-law phase-error model in the inversion were used to significantly improve the quality of the resistivity phase images over those obtained during previous monitoring experiments at the Rifle IRFC site. The imaging results reveal spatiotemporal changes in the phase response of aquifer sediments, which correlate with increases in Fe(II) and precipitation of metal sulfides (e.g., FeS) following the iterative stimulation of iron and sulfate reducing microorganism. Only modest changes in resistivity magnitude were observed over the monitoring period. The largest phase anomalies (>40 mrad) were observed hundreds of days after halting acetate injection, in conjunction with accumulation of Fe(II) in the presence of residual FeS minerals, reflecting preservation of geochemically reduced conditions in the aquifer – a prerequisite for ensuring the long-term stability of immobilized, redox-sensitive contaminants, such as uranium.

  20. Using complex resistivity imaging to infer biogeochemical processes associated with bioremediation of an uranium-contaminated aquifer

    NASA Astrophysics Data System (ADS)

    Flores Orozco, AdriáN.; Williams, Kenneth H.; Long, Philip E.; Hubbard, Susan S.; Kemna, Andreas

    2011-09-01

    Experiments at the Department of Energy's Integrated Field Research Challenge (IFRC) site near Rifle, Colorado, have demonstrated the ability to remove uranium from groundwater by stimulating the growth and activity of Geobacter species through acetate amendment. Prolonging the activity of these strains in order to optimize uranium bioremediation has prompted the development of minimally invasive and spatially extensive monitoring methods diagnostic of their in situ activity and the end products of their metabolism. Here we demonstrate the use of complex resistivity imaging for monitoring biogeochemical changes accompanying stimulation of indigenous aquifer microorganisms during and after a prolonged period (100+ days) of acetate injection. A thorough raw data statistical analysis of discrepancies between normal and reciprocal measurements and incorporation of a new power law phase-error model in the inversion were used to significantly improve the quality of the resistivity phase images over those obtained during previous monitoring experiments at the Rifle IFRC site. The imaging results reveal spatiotemporal changes in the phase response of aquifer sediments, which correlate with increases in Fe(II) and precipitation of metal sulfides (e.g., FeS) following the iterative stimulation of iron and sulfate-reducing microorganisms. Only modest changes in resistivity magnitude were observed over the monitoring period. The largest phase anomalies (>40 mrad) were observed hundreds of days after halting acetate injection, in conjunction with accumulation of Fe(II) in the presence of residual FeS minerals, reflecting preservation of geochemically reduced conditions in the aquifer, a prerequisite for ensuring the long-term stability of immobilized, redox-sensitive contaminants such as uranium.

  1. Biogeochemical Processes leading to release of As and Mn in the groundwaters of Murshidabad District of West Bengal, India

    NASA Astrophysics Data System (ADS)

    Johannesson, K. H.; Datta, S.; Vega, M.; Berube, M.

    2015-12-01

    Elevated concentrations of both manganese (Mn) and arsenic (As) have been observed in the groundwaters of Murshidabad, in eastern India. Mn, a postulated neurotoxin is known to cause neuromuscular problems, inhibition of neurological development particularly in children. The health impacts from higher bioavailable proportions of As is well known in being a Class I carcinogen. The discovery of this additional contaminant in the already As afflicted regions of SE Asia poses serious implications for millions of inhabitants. The current study aims to address three objectives in understanding biogeochemical cycling of Mn and As in groundwaters: i) the occurrence and overall distribution (lateral and temporal) of groundwater Mn and As; ii) characterization of the dissolved organic matter and microbial content and the resultant effects that are imposed on dissolved As and Mn; and iii) the relationship between Mn, As, and various other inorganic constituents and their impact on the subsequent release of Mn, on top of As. A three year time series of chemical data for the dissolved constituents from six villages in Murshidabad will be presented. Hariharpara, Beldanga, Naoda villages contain reducing groundwaters (mean Mn: 0.93mg/L); Nabagram, Kandi, Khidirpore demonstrate oxidizing aquifers (Mn: 0.74mg/L). Eighty-three percent of the wells surveyed contain Mn levels that exceed the recommended WHO limit of 0.4 mg/L. Dissolved As within the same locations show a range from <10μg/L to ~4000 μg/L. DOC values demonstrate a positive correlation with Mn in reducing and a negative correlation in oxidizing environments. The reducing aquifers are also high in As and DOC, indicating that the microbially mediated reductive dissolution of As-sorbed onto Fe-Mn mineral phases is probable. Fluorescence analyses of dissolved OM, solidphase modeling of Mn speciation are being combined in this study for more insight into the mechanisms of Mn release and its relation if any to As release.

  2. Coupling entropy of co-processing model on social networks

    NASA Astrophysics Data System (ADS)

    Zhang, Zhanli

    2015-08-01

    Coupling entropy of co-processing model on social networks is investigated in this paper. As one crucial factor to determine the processing ability of nodes, the information flow with potential time lag is modeled by co-processing diffusion which couples the continuous time processing and the discrete diffusing dynamics. Exact results on master equation and stationary state are achieved to disclose the formation. In order to understand the evolution of the co-processing and design the optimal routing strategy according to the maximal entropic diffusion on networks, we propose the coupling entropy comprehending the structural characteristics and information propagation on social network. Based on the analysis of the co-processing model, we analyze the coupling impact of the structural factor and information propagating factor on the coupling entropy, where the analytical results fit well with the numerical ones on scale-free social networks.

  3. Coupled hydrological and geochemical process evolution at the Landscape Evolution Observatory

    NASA Astrophysics Data System (ADS)

    Troch, P. A. A.

    2015-12-01

    Predictions of hydrologic and biogeochemical responses to natural and anthropogenic forcing at the landscape scale are highly uncertain due to the effects of heterogeneity on the scaling of reaction, flow and transport phenomena. The physical, chemical and biological structures and processes controlling reaction, flow and transport in natural landscapes interact at multiple space and time scales and are difficult to quantify. The current paradigm of hydrological and geochemical theory is that process descriptions derived from observations at small scales in controlled systems can be applied to predict system response at much larger scales, as long as some 'equivalent' or 'effective' values of the scale-dependent parameters can be identified. Furthermore, natural systems evolve in time in a way that is hard to observe in short-run laboratory experiments or in natural landscapes with unknown initial conditions and time-variant forcing. The spatial structure of flow pathways along hillslopes determines the rate, extent and distribution of geochemical reactions (and biological colonization) that drive weathering, the transport and precipitation of solutes and sediments, and the further evolution of soil structure. The resulting evolution of structures and processes, in turn, produces spatiotemporal variability of hydrological states and flow pathways. There is thus a need for experimental research to improve our understanding of hydrology-biogeochemistry interactions and feedbacks at appropriate spatial scales larger than laboratory soil column experiments. Such research is complicated in real-world settings because of poorly constrained impacts of initial conditions, climate variability, ecosystems dynamics, and geomorphic evolution. The Landscape Evolution Observatory (LEO) at Biosphere 2 offers a unique research facility that allows real-time observations of incipient hydrologic and biogeochemical response under well-constrained initial conditions and climate

  4. Experimental observations and numerical modeling of coupled microbial and transport processes in variably saturated sand.

    SciTech Connect

    Rockhold, Mark L.; Yarwood, R R.; Niemet, M R.; Bottomley, Peter J.; Selker, John S.

    2005-05-13

    An experimental and numerical investigation was conducted to study interactions between microbial dynamics and transport processes in variably saturated porous media. Experiments were conducted with constant, surface-applied water fluxes in duplicate, variably saturated, sand-filled columns that were uniformly inoculated with the bacterium Pseudomonas fluorescens HK44. The permeability of the sand in the columns was reduced by a factor of 45 during one week of growth on glucose. Pressure heads increased (became less negative) at all measured depths, but significant increases in the apparent volumetric water contents were only observed in the upper 5 cm of the columns, corresponding to the areas with the highest concentrations of attached bacteria. A numerical model was used to simulate the experiments. The model accounted for the processes of water flow, solute and bacterial transport, cell growth and accumulation, glucose and oxygen consumption, and gas diffusion and exchange. Observed changes in water content and pressure head were reproduced approximately using fluid-media scaling to account for an apparent surface-tension lowering effect. Reasonable correspondence was obtained between observed and simulated effluent data and final attached biomass concentration distributions using first-order reversible cell attachment and detachment kinetics with attachment rate coefficients based on particle-filtration theory, and time-dependent detachment rate coefficients. The results of this study illustrate the potential importance of using fully coupled multi-fluid flow and multi-component reactive transport equations to model coupled biogeochemical and transport processes in soils.

  5. A dynamic marine iron cycle module coupled to the University of Victoria Earth System Model: the Kiel Marine Biogeochemical Model 2 for UVic 2.9

    NASA Astrophysics Data System (ADS)

    Nickelsen, L.; Keller, D. P.; Oschlies, A.

    2015-05-01

    Marine biological production as well as the associated biotic uptake of carbon in many ocean regions depends on the availability of nutrients in the euphotic zone. While large areas are limited by nitrogen and/or phosphorus, the micronutrient iron is considered the main limiting nutrient in the North Pacific, equatorial Pacific and Southern Ocean. Changes in iron availability via changes in atmospheric dust input are discussed to play an important role in glacial-interglacial cycles via climate feedbacks caused by changes in biological ocean carbon sequestration. Although many aspects of the iron cycle remain unknown, its incorporation into marine biogeochemical models is needed to test our current understanding and better constrain its role in the Earth system. In the University of Victoria Earth System Climate Model (UVic) iron limitation in the ocean was, until now, simulated pragmatically with an iron concentration masking scheme that did not allow a consistent interactive response to perturbations of ocean biogeochemistry or iron cycling sensitivity studies. Here, we replace the iron masking scheme with a dynamic iron cycle and compare the results to available observations and the previous marine biogeochemical model. Sensitivity studies are also conducted with the new model to test the sensitivity of the model to parameterized iron ligand concentrations, the importance of considering the variable solubility of iron in dust deposition, the importance of considering high-resolution bathymetry for the sediment release of iron, the effect of scaling the sedimentary iron release with temperature and the sensitivity of the iron cycle to a climate change scenario.

  6. Fostering new relational experience: clinical process in couple psychotherapy.

    PubMed

    Marmarosh, Cheri L

    2014-03-01

    One of the most critical goals for couple psychotherapy is to foster a new relational experience in the session where the couple feels safe enough to reveal more vulnerable emotions and to explore their defensive withdrawal, aggressive attacking, or blaming. The lived intimate experience in the session offers the couple an opportunity to gain integrative insight into their feelings, expectations, and behaviors that ultimately hinder intimacy. The clinical processes that are necessary include empathizing with the couple and facilitating safety within the session, looking for opportunities to explore emotions, ruptures, and unconscious motivations that maintain distance in the relationship, and creating a new relational experience in the session that has the potential to engender integrative insight. These clinical processes will be presented with empirical support. Experts from a session will be used to highlight how these processes influence the couple and promote increased intimacy. (PsycINFO Database Record (c) 2014 APA, all rights reserved). PMID:24059733

  7. Thermodynamically coupled mass transport processes in a saturated clay

    SciTech Connect

    Carnahan, C.L.

    1984-11-01

    Gradients of temperature, pressure, and fluid composition in saturated clays give rise to coupled transport processes (thermal and chemical osmosis, thermal diffusion, ultrafiltration) in addition to the direct processes (advection and diffusion). One-dimensional transport of water and a solute in a saturated clay subjected to mild gradients of temperature and pressure was simulated numerically. When full coupling was accounted for, volume flux (specific discharge) was controlled by thermal osmosis and chemical osmosis. The two coupled fluxes were oppositely directed, producing a point of stagnation within the clay column. Solute flows were dominated by diffusion, chemical osmosis, and thermal osmosis. Chemical osmosis produced a significant flux of solute directed against the gradient of solute concentration; this effect reduced solute concentrations relative to the case without coupling. Predictions of mass transport in clays at nuclear waste repositories could be significantly in error if coupled transport processes are not accounted for. 14 references, 8 figures, 1 table.

  8. Process for fabricating a charge coupled device

    DOEpatents

    Conder, Alan D.; Young, Bruce K. F.

    2002-01-01

    A monolithic three dimensional charged coupled device (3D-CCD) which utilizes the entire bulk of the semiconductor for charge generation, storage, and transfer. The 3D-CCD provides a vast improvement of current CCD architectures that use only the surface of the semiconductor substrate. The 3D-CCD is capable of developing a strong E-field throughout the depth of the semiconductor by using deep (buried) parallel (bulk) electrodes in the substrate material. Using backside illumination, the 3D-CCD architecture enables a single device to image photon energies from the visible, to the ultra-violet and soft x-ray, and out to higher energy x-rays of 30 keV and beyond. The buried or bulk electrodes are electrically connected to the surface electrodes, and an E-field parallel to the surface is established with the pixel in which the bulk electrodes are located. This E-field attracts charge to the bulk electrodes independent of depth and confines it within the pixel in which it is generated. Charge diffusion is greatly reduced because the E-field is strong due to the proximity of the bulk electrodes.

  9. Quantification of terrestrial ecosystem carbon dynamics in the conterminous United States combining a process-based biogeochemical model and MODIS and AmeriFlux data

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Satellite remote sensing provides continuous temporal and spatial information of terrestrial ecosystems. Using these remote sensing data and eddy flux measurements and biogeochemical models, such as the Terrestrial Ecosystem Model (TEM), should provide a more adequate quantification of carbon dynami...

  10. Carbon sequestration by patch fertilization: A comprehensive assessment using coupled physical-ecological-biogeochemical models: FINAL REPORT of grant Grant No. DE-FG02-04ER63726

    SciTech Connect

    Sarmiento, Jorge L; Gnanadesikan, Anand; Gruber, Nicolas

    2007-06-21

    This final report summarizes research undertaken collaboratively between Princeton University, the NOAA Geophysical Fluid Dynamics Laboratory on the Princeton University campus, the State University of New York at Stony Brook, and the University of California, Los Angeles between September 1, 2000, and November 30, 2006, to do fundamental research on ocean iron fertilization as a means to enhance the net oceanic uptake of CO2 from the atmosphere. The approach we proposed was to develop and apply a suite of coupled physical-ecologicalbiogeochemical models in order to (i) determine to what extent enhanced carbon fixation from iron fertilization will lead to an increase in the oceanic uptake of atmospheric CO2 and how long this carbon will remain sequestered (efficiency), and (ii) examine the changes in ocean ecology and natural biogeochemical cycles resulting from iron fertilization (consequences). The award was funded in two separate three-year installments: • September 1, 2000 to November 30, 2003, for a project entitled “Ocean carbon sequestration by fertilization: An integrated biogeochemical assessment.” A final report was submitted for this at the end of 2003 and is included here as Appendix 1. • December 1, 2003 to November 30, 2006, for a follow-on project under the same grant number entitled “Carbon sequestration by patch fertilization: A comprehensive assessment using coupled physical-ecological-biogeochemical models.” This report focuses primarily on the progress we made during the second period of funding subsequent to the work reported on in Appendix 1. When we began this project, we were thinking almost exclusively in terms of long-term fertilization over large regions of the ocean such as the Southern Ocean, with much of our focus being on how ocean circulation and biogeochemical cycling would interact to control the response to a given fertilization scenario. Our research on these types of scenarios, which was carried out largely during

  11. Solar terrestrial coupling through space plasma processes

    SciTech Connect

    Birn, J.

    2000-12-01

    This is the final report of a three-year, Laboratory-Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). The project investigates plasma processes that govern the interaction between the solar wind, charged particles ejected from the sun, and the earth's magnetosphere, the region above the ionosphere governed by the terrestrial magnetic field. Primary regions of interest are the regions where different plasma populations interact with each other. These are regions of particularly dynamic plasma behavior, associated with magnetic flux and energy transfer and dynamic energy release. The investigations concerned charged particle transport and energization, and microscopic and macroscopic instabilities in the magnetosphere and adjacent regions. The approaches combined space data analysis with theory and computer simulations.

  12. Measurements of spectral optical properties and their relation to biogeochemical variables and processes in Crater Lake, Crater Lake National Park, OR

    USGS Publications Warehouse

    Boss, E.S.; Collier, R.; Larson, G.; Fennel, K.; Pegau, W.S.

    2007-01-01

    Spectral inherent optical properties (IOPs) have been measured at Crater Lake, OR, an extremely clear sub-alpine lake. Indeed Pure water IOPs are major contributors to the total IOPs, and thus to the color of the lake. Variations in the spatial distribution of IOPs were observed in June and September 2001, and reflect biogeochemical processes in the lake. Absorption by colored dissolved organic material increases with depth and between June and September in the upper 300 m. This pattern is consistent with a net release of dissolved organic materials from primary and secondary production through the summer and its photo-oxidation near the surface. Waters fed by a tributary near the lake's rim exhibited low levels of absorption by dissolved organic materials. Scattering is mostly dominated by organic particulate material, though inorganic material is found to enter the lake from the rim following a rain storm. Several similarities to oceanic oligotrophic regions are observed: (a) The Beam attenuation correlates well with particulate organic material (POM) and the relationship is similar to that observed in the open ocean. (b) The specific absorption of colored dissolved organic material has a value similar to that of open ocean humic material. (c) The distribution of chlorophyll with depth does not follow the distribution of particulate organic material due to photo-acclimation resulting in a subsurface pigment maximum located about 50 m below the POM maximum. ?? 2007 Springer Science+Business Media B.V.

  13. Mapping pan-Arctic CH4 emissions using an adjoint method by integrating process-based wetland and lake biogeochemical models and atmospheric CH4 concentrations

    NASA Astrophysics Data System (ADS)

    Tan, Z.; Zhuang, Q.; Henze, D. K.; Frankenberg, C.; Dlugokencky, E. J.; Sweeney, C.; Turner, A. J.

    2015-12-01

    Understanding CH4 emissions from wetlands and lakes are critical for the estimation of Arctic carbon balance under fast warming climatic conditions. To date, our knowledge about these two CH4 sources is almost solely built on the upscaling of discontinuous measurements in limited areas to the whole region. Many studies indicated that, the controls of CH4 emissions from wetlands and lakes including soil moisture, lake morphology and substrate content and quality are notoriously heterogeneous, thus the accuracy of those simple estimates could be questionable. Here we apply a high spatial resolution atmospheric inverse model (nested-grid GEOS-Chem Adjoint) over the Arctic by integrating SCIAMACHY and NOAA/ESRL CH4 measurements to constrain the CH4 emissions estimated with process-based wetland and lake biogeochemical models. Our modeling experiments using different wetland CH4 emission schemes and satellite and surface measurements show that the total amount of CH4 emitted from the Arctic wetlands is well constrained, but the spatial distribution of CH4 emissions is sensitive to priors. For CH4 emissions from lakes, our high-resolution inversion shows that the models overestimate CH4 emissions in Alaskan costal lowlands and East Siberian lowlands. Our study also indicates that the precision and coverage of measurements need to be improved to achieve more accurate high-resolution estimates.

  14. An approach to quantify sources, seasonal change, and biogeochemical processes affecting metal loading in streams: Facilitating decisions for remediation of mine drainage

    USGS Publications Warehouse

    Kimball, B.A.; Runkel, R.L.; Walton-Day, K.

    2010-01-01

    Historical mining has left complex problems in catchments throughout the world. Land managers are faced with making cost-effective plans to remediate mine influences. Remediation plans are facilitated by spatial mass-loading profiles that indicate the locations of metal mass-loading, seasonal changes, and the extent of biogeochemical processes. Field-scale experiments during both low- and high-flow conditions and time-series data over diel cycles illustrate how this can be accomplished. A low-flow experiment provided spatially detailed loading profiles to indicate where loading occurred. For example, SO42 - was principally derived from sources upstream from the study reach, but three principal locations also were important for SO42 - loading within the reach. During high-flow conditions, Lagrangian sampling provided data to interpret seasonal changes and indicated locations where snowmelt runoff flushed metals to the stream. Comparison of metal concentrations between the low- and high-flow experiments indicated substantial increases in metal loading at high flow, but little change in metal concentrations, showing that toxicity at the most downstream sampling site was not substantially greater during snowmelt runoff. During high-flow conditions, a detailed temporal sampling at fixed sites indicated that Zn concentration more than doubled during the diel cycle. Monitoring programs must account for diel variation to provide meaningful results. Mass-loading studies during different flow conditions and detailed time-series over diel cycles provide useful scientific support for stream management decisions.

  15. Dissociative identity disorder and the process of couple therapy.

    PubMed

    Macintosh, Heather B

    2013-01-01

    Couple therapy in the context of dissociative identity disorder (DID) has been neglected as an area of exploration and development in the couple therapy and trauma literature. What little discussion exists focuses primarily on couple therapy as an adjunct to individual therapy rather than as a primary treatment for couple distress and trauma. Couple therapy researchers have begun to develop adaptations to provide effective support to couples dealing with the impact of childhood trauma in their relationships, but little attention has been paid to the specific and complex needs of DID patients in couple therapy (H. B. MacIntosh & S. Johnson, 2008 ). This review and case presentation explores the case of "Lisa," a woman diagnosed with DID, and "Don," her partner, and illustrates the themes of learning to communicate, handling conflicting needs, responding to child alters, and addressing sexuality and education through their therapy process. It is the hope of the author that this discussion will renew interest in the field of couple therapy in the context of DID, with the eventual goal of developing an empirically testable model of treatment for couples. PMID:23282049

  16. Dissociative identity disorder and the process of couple therapy.

    PubMed

    Macintosh, Heather B

    2013-01-01

    Couple therapy in the context of dissociative identity disorder (DID) has been neglected as an area of exploration and development in the couple therapy and trauma literature. What little discussion exists focuses primarily on couple therapy as an adjunct to individual therapy rather than as a primary treatment for couple distress and trauma. Couple therapy researchers have begun to develop adaptations to provide effective support to couples dealing with the impact of childhood trauma in their relationships, but little attention has been paid to the specific and complex needs of DID patients in couple therapy (H. B. MacIntosh & S. Johnson, 2008 ). This review and case presentation explores the case of "Lisa," a woman diagnosed with DID, and "Don," her partner, and illustrates the themes of learning to communicate, handling conflicting needs, responding to child alters, and addressing sexuality and education through their therapy process. It is the hope of the author that this discussion will renew interest in the field of couple therapy in the context of DID, with the eventual goal of developing an empirically testable model of treatment for couples.

  17. Improving predictions of large scale soil carbon dynamics: Integration of fine-scale hydrological and biogeochemical processes, scaling, and benchmarking

    NASA Astrophysics Data System (ADS)

    Riley, W. J.; Dwivedi, D.; Ghimire, B.; Hoffman, F. M.; Pau, G. S. H.; Randerson, J. T.; Shen, C.; Tang, J.; Zhu, Q.

    2015-12-01

    Numerical model representations of decadal- to centennial-scale soil-carbon dynamics are a dominant cause of uncertainty in climate change predictions. Recent attempts by some Earth System Model (ESM) teams to integrate previously unrepresented soil processes (e.g., explicit microbial processes, abiotic interactions with mineral surfaces, vertical transport), poor performance of many ESM land models against large-scale and experimental manipulation observations, and complexities associated with spatial heterogeneity highlight the nascent nature of our community's ability to accurately predict future soil carbon dynamics. I will present recent work from our group to develop a modeling framework to integrate pore-, column-, watershed-, and global-scale soil process representations into an ESM (ACME), and apply the International Land Model Benchmarking (ILAMB) package for evaluation. At the column scale and across a wide range of sites, observed depth-resolved carbon stocks and their 14C derived turnover times can be explained by a model with explicit representation of two microbial populations, a simple representation of mineralogy, and vertical transport. Integrating soil and plant dynamics requires a 'process-scaling' approach, since all aspects of the multi-nutrient system cannot be explicitly resolved at ESM scales. I will show that one approach, the Equilibrium Chemistry Approximation, improves predictions of forest nitrogen and phosphorus experimental manipulations and leads to very different global soil carbon predictions. Translating model representations from the site- to ESM-scale requires a spatial scaling approach that either explicitly resolves the relevant processes, or more practically, accounts for fine-resolution dynamics at coarser scales. To that end, I will present recent watershed-scale modeling work that applies reduced order model methods to accurately scale fine-resolution soil carbon dynamics to coarse-resolution simulations. Finally, we

  18. Biogeochemical processes controlling the mobility of major ions and trace metals in aquitard sediments beneath an oil sand tailing pond: Laboratory studies and reactive transport modeling

    NASA Astrophysics Data System (ADS)

    Holden, A. A.; Haque, S. E.; Mayer, K. U.; Ulrich, A. C.

    2013-08-01

    Increased production and expansion of the oil sand industry in Alberta are of great benefit to the economy, but they carry major environmental challenges. The volume of fluid fine tailings requiring storage is 840 × 106 m3 and growing, making it imperative that we better understand the fate and transport of oil sand process-affected water (OSPW) seepage from these facilities. Accordingly, the current study seeks to characterize both a) the potential for major ion and trace element release, and b) the principal biogeochemical processes involved, as tailing pond OSPW infiltrates into, and interacts with, underlying glacial till sediments prior to reaching down gradient aquifers or surface waters. Objectives were addressed through a series of aqueous and solid phase experiments, including radial diffusion cells, an isotope analysis, X-ray diffraction, and sequential extractions. The diffusion cells were also simulated in a reactive transport framework to elucidate key reaction processes. The experiments indicate that the ingress and interaction of OSPW with the glacial till sediment-pore water system will result in: a mitigation of ingressing Na (retardation), displacement and then limited precipitation of exchangeable Ca and Mg (as carbonates), sulfate reduction and subsequent precipitation of the produced sulfides, as well as biodegradation of organic carbon. High concentrations of ingressing Cl (~ 375 mg L- 1) and Na (~ 575 mg L- 1) (even though the latter is delayed, or retarded) are expected to migrate through the till and into the underlying sand channel. Trace element mobility was influenced by ion exchange, oxidation-reduction, and mineral phase reactions including reductive dissolution of metal oxyhydroxides — in accordance with previous observations within sandy aquifer settings. Furthermore, although several trace elements showed the potential for release (Al, B, Ba, Cd, Mn, Pb, Si, Sr), large-scale mobilization is not supported. Thus, the present

  19. Biogeochemical processes controlling the mobility of major ions and trace metals in aquitard sediments beneath an oil sand tailing pond: laboratory studies and reactive transport modeling.

    PubMed

    Holden, A A; Haque, S E; Mayer, K U; Ulrich, A C

    2013-08-01

    Increased production and expansion of the oil sand industry in Alberta are of great benefit to the economy, but they carry major environmental challenges. The volume of fluid fine tailings requiring storage is 840×10(6) m(3) and growing, making it imperative that we better understand the fate and transport of oil sand process-affected water (OSPW) seepage from these facilities. Accordingly, the current study seeks to characterize both a) the potential for major ion and trace element release, and b) the principal biogeochemical processes involved, as tailing pond OSPW infiltrates into, and interacts with, underlying glacial till sediments prior to reaching down gradient aquifers or surface waters. Objectives were addressed through a series of aqueous and solid phase experiments, including radial diffusion cells, an isotope analysis, X-ray diffraction, and sequential extractions. The diffusion cells were also simulated in a reactive transport framework to elucidate key reaction processes. The experiments indicate that the ingress and interaction of OSPW with the glacial till sediment-pore water system will result in: a mitigation of ingressing Na (retardation), displacement and then limited precipitation of exchangeable Ca and Mg (as carbonates), sulfate reduction and subsequent precipitation of the produced sulfides, as well as biodegradation of organic carbon. High concentrations of ingressing Cl (~375 mg L(-1)) and Na (~575 mg L(-1)) (even though the latter is delayed, or retarded) are expected to migrate through the till and into the underlying sand channel. Trace element mobility was influenced by ion exchange, oxidation-reduction, and mineral phase reactions including reductive dissolution of metal oxyhydroxides - in accordance with previous observations within sandy aquifer settings. Furthermore, although several trace elements showed the potential for release (Al, B, Ba, Cd, Mn, Pb, Si, Sr), large-scale mobilization is not supported. Thus, the present

  20. Surface micro-topography causes hot spots of biogeochemical activity in wetland systems: A virtual modeling experiment

    NASA Astrophysics Data System (ADS)

    Frei, S.; Knorr, K. H.; Peiffer, S.; Fleckenstein, J. H.

    2012-12-01

    Wetlands provide important ecohydrological services by regulating fluxes of nutrients and pollutants to receiving waters, which can in turn mitigate adverse effects on water quality. Turnover of redox-sensitive solutes in wetlands has been shown to take place in distinct spatial and temporal patterns, commonly referred to as hot spots and hot moments. Despite the importance of such patterns for solute fluxes the mechanistic understanding of their formation is still weak and their existence is often explained by variations in soil properties and diffusive transport only. Here we show that surface micro-topography in wetlands can cause the formation of biogeochemical hot spots solely by the advective redistribution of infiltrating water as a result of complex subsurface flow patterns. Surface and subsurface flows are simulated for an idealized section of a riparian wetland using a fully integrated numerical code for coupled surface-subsurface systems. Biogeochemical processes and transport along advective subsurface flow paths are simulated kinetically using the biogeochemical code PHREEQC. Distinct patterns of biogeochemical activity (expressed as reaction rates) develop in response to micro-topography induced subsurface flow patterns. Simulated vertical pore water profiles for various redox-sensitive species resemble profiles observed in the field. This mechanistic explanation of hot spot formation complements the more static explanations that relate hot spots solely to spatial variability in soil characteristics and can account for spatial as well as temporal variability of biogeochemical activity, which is needed to assess future changes in the biogeochemical turnover of wetland systems.

  1. Biogeochemical cycling and remote sensing

    NASA Technical Reports Server (NTRS)

    Peterson, D. L.

    1985-01-01

    Research is underway at the NASA Ames Research Center that is concerned with aspects of the nitrogen cycle in terrestrial ecosystems. An interdisciplinary research group is attempting to correlate nitrogen transformations, processes, and productivity with variables that can be remotely sensed. Recent NASA and other publications concerning biogeochemical cycling at global scales identify attributes of vegetation that could be related or explain the spatial variation in biologically functional variables. These functional variables include net primary productivity, annual nitrogen mineralization, and possibly the emission rate of nitrous oxide from soils.

  2. An integrated water system model considering hydrological and biogeochemical processes at basin scale: model construction and application

    NASA Astrophysics Data System (ADS)

    Zhang, Y. Y.; Shao, Q. X.; Ye, A. Z.; Xing, H. T.

    2014-08-01

    Integrated water system modeling is a reasonable approach to provide scientific understanding and possible solutions to tackle the severe water crisis faced over the world and to promote the implementation of integrated river basin management. Such a modeling practice becomes more feasible nowadays due to better computing facilities and available data sources. In this study, the process-oriented water system model (HEXM) is developed by integrating multiple water related processes including hydrology, biogeochemistry, environment and ecology, as well as the interference of human activities. The model was tested in the Shaying River Catchment, the largest, highly regulated and heavily polluted tributary of Huai River Basin in China. The results show that: HEXM is well integrated with good performance on the key water related components in the complex catchments. The simulated daily runoff series at all the regulated and less-regulated stations matches observations, especially for the high and low flow events. The average values of correlation coefficient and coefficient of efficiency are 0.81 and 0.63, respectively. The dynamics of observed daily ammonia-nitrogen (NH4N) concentration, as an important index to assess water environmental quality in China, are well captured with average correlation coefficient of 0.66. Furthermore, the spatial patterns of nonpoint source pollutant load and grain yield are also simulated properly, and the outputs have good agreements with the statistics at city scale. Our model shows clear superior performance in both calibration and validation in comparison with the widely used SWAT model. This model is expected to give a strong reference for water system modeling in complex basins, and provide the scientific foundation for the implementation of integrated river basin management all over the world as well as the technical guide for the reasonable regulation of dams and sluices and environmental improvement in river basins.

  3. Effects of physical and biogeochemical processes on aquatic ecosystems at the groundwater-surface water interface: An evaluation of a sulfate-impacted wild rice stream in Minnesota (USA)

    NASA Astrophysics Data System (ADS)

    Ng, G. H. C.; Yourd, A. R.; Myrbo, A.; Johnson, N.

    2015-12-01

    Significant uncertainty and variability in physical and biogeochemical processes at the groundwater-surface water interface complicate how surface water chemistry affects aquatic ecosystems. Questions surrounding a unique 10 mg/L sulfate standard for wild rice (Zizania sp.) waters in Minnesota are driving research to clarify conditions controlling the geochemistry of shallow sediment porewater in stream- and lake-beds. This issue raises the need and opportunity to carry out in-depth, process-based analysis into how water fluxes and coupled C, S, and Fe redox cycles interact to impact aquatic plants. Our study builds on a recent state-wide field campaign that showed that accumulation of porewater sulfide from sulfate reduction impairs wild rice, an annual grass that grows in shallow lakes and streams in the Great Lakes region of North America. Negative porewater sulfide correlations with organic C and Fe quantities also indicated that lower redox rates and greater mineral precipitation attenuate sulfide. Here, we focus on a stream in northern Minnesota that receives high sulfate loading from iron mining activity yet maintains wild rice stands. In addition to organic C and Fe effects, we evaluate the degree to which streambed hydrology, and in particular groundwater contributions, accounts for the active biogeochemistry. We collect field measurements, spanning the surrounding groundwater system to the stream, to constrain a reactive-transport model. Observations from seepage meters, temperature probes, and monitoring wells delineate upward flow that may lessen surface water impacts below the stream. Geochemical analyses of groundwater, porewater, and surface water samples and of sediment extractions reveal distinctions among the different domains and stream banks, which appear to jointly control conditions in the streambed. A model based on field conditions can be used to evaluate the relative the importance and the spatiotemporal scales of diverse flux and

  4. Biogeochemical cycling and remote sensing

    NASA Technical Reports Server (NTRS)

    Peterson, D. L.; Mouat, D. A.

    1984-01-01

    The present investigation is concerned with the role of remote sensing in the analysis of biochemical cycling. A general review is provided of the interest of NASA in biochemical cycling, taking into account an assessment of the state and dynamics of the pools and fluxes of four major elements (carbon, nitrogen, phosphorus, sulfur), an understanding of the coupling and interaction of the biosphere and the atmosphere, and an understanding of the biosphere and the oceans. Attention is given to biogeochemical cycling science issues, the potential remote sensing role, the vegetation type, aspects of vegetation structure, the leaf area index, the canopy height, functional relationships, environmental and soil variables, questions of experimental design, sampling sites and ground data, and radiometric data and analysis.

  5. Biogeochemical and hydrological processes controlling the transport and fate of 1,2-dibromoethane (EDB) in soil and ground water, central Florida

    USGS Publications Warehouse

    Katz, Brian G.

    1993-01-01

    Widespread contamination of ground water in central Florida by 1,2-dibromoethane (EDB) has resulted because of its heavy usage as a soil fumigant during a 20-year period, its relatively high aqueous solubility, and the low sorption capacity of the highly permeable sandy soils lacking organic matter. Two models were used to improve understanding of biogeochemical and hydrological processes that control the transport and fate of EDB in soil and ground water. First, a mass-balance model was developed to estimate the max-imum concentration of EDB in ground water resulting from known application rates of EDB. Key processes that were quantified in the model included volatilization, diffusion of EDB vapor in soils, partitioning between aqueous and gaseous phases, sorption of EDB vapor on organic carbon and soil particles, chemical and biological degradation reactions, and nonreversible binding of EDB to soils. Model calculations using an EDB half-life of 0.65 year closely reproduced the maximum observed concentrations in ground water, 37 and 0.22 micrograms per liter, at downgradient sites in two study areas in central Florida. Maximum concentrations of EDB in ground water also were estimated in a second model that incorporated an analytical solution to the three-dimensional advection-dispersion equation for instantaneous point sources of EDB entering the flow systems in the two study areas. The model used an EDB half-life of 0.65 year (obtained from the mass-balance calculations), mean ground-water flow velocities of 0.6 to 1 meter per day, coefficients of longitudinal hydro-dynamic dispersion of 0.6 to 1.0 square meter per day, and coefficients of transverse hydrodynamic dispersion of 0.1 square meter per day. Peak concentrations of EDB in ground water calculated from the analytical model agreed closely with observed peak concentrations measured from 1983 through 1987.

  6. DayCent-Chem Simulations of Ecological and Biogeochemical Processes of Eight Mountain Ecosystems in the United States

    USGS Publications Warehouse

    Hartman, Melannie D.; Baron, Jill S.; Clow, David W.; Creed, Irena F.; Driscoll, Charles T.; Ewing, Holly A.; Haines, Bruce D.; Knoepp, Jennifer; Lajtha, Kate; Ojima, Dennis S.; Parton, William J.; Renfro, Jim; Robinson, R. Bruce; Van Miegroet, Helga; Weathers, Kathleen C.; Williams, Mark W.

    2009-01-01

    deposition as a result of dry and fog inputs. The uncertainties related to weathering reactions, deposition, soil cation exchange capacity, and groundwater contributions influenced how well the simulated acid neutralizing capacity (ANC) and pH estimates compared to observed values. Daily discharge was well represented by the model for most sites. The chapters of this report describe the parameterization for each site and summarize model results for ecosystem variables, stream discharge, and stream chemistry. This intersite comparison exercise provided insight about important and possibly not well understood processes.

  7. Vibronic coupling simulations for linear and nonlinear optical processes: Theory

    NASA Astrophysics Data System (ADS)

    Silverstein, Daniel W.; Jensen, Lasse

    2012-02-01

    A comprehensive vibronic coupling model based on the time-dependent wavepacket approach is derived to simulate linear optical processes, such as one-photon absorbance and resonance Raman scattering, and nonlinear optical processes, such as two-photon absorbance and resonance hyper-Raman scattering. This approach is particularly well suited for combination with first-principles calculations. Expressions for the Franck-Condon terms, and non-Condon effects via the Herzberg-Teller coupling approach in the independent-mode displaced harmonic oscillator model are presented. The significance of each contribution to the different spectral types is discussed briefly.

  8. Biogeochemical processes underpin ecosystem services

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Elemental cycling is critical to the function of ecosystems and delivery of key ecosystem services because many of these elements are essential nutrients or detrimental toxicants that directly affect the health of organisms and ecosystems. A team of authors from North Carolina State University and ...

  9. Cretaceous-Palaeogene experiments in Biogeochemical Resilience

    NASA Astrophysics Data System (ADS)

    Penman, D. E.; Henehan, M. J.; Hull, P. M.; Planavsky, N.; Schmidt, D. N.; Rae, J. W. B.; Thomas, E.; Huber, B. T.

    2015-12-01

    Human activity is altering biogeochemical cycles in the ocean. While ultimately anthropogenic forcings may be brought under control, it is still unclear whether tipping points may exist beyond which human-induced changes to biogeochemical cycles become irreversible. We use the Late Cretaceous and the Cretaceous-Palaeogene (K-Pg) boundary interval as an informative case study. Over this interval, two carbon cycle perturbations (gradual flood basalt volcanism and abrupt bolide impact) occurred within a short time window, allowing us to investigate the resilience of biogeochemical cycles to different pressures applied to the same initial boundary conditions on very different time scales. We demonstrate that relatively gradual emission of CO2 from the Deccan large igneous province was efficiently mitigated within the limits of existing biogeochemical processes. However, the rapid extinction of pelagic calcifying organisms at the K-Pg boundary due to the Chicxulub bolide impact had more profound effects, and caused lasting (> 1 million years) changes to biogeochemical cycles. By combining sedimentological observations with boron isotope-based pH reconstructions over these events, we document two potentially useful partial analogues for best and worst case scenarios for anthropogenic global change. We suggest that if current ocean acidification results in the mass extinction of marine pelagic calcifiers, we may cause profound changes to the Earth system that will persist for 100,000s to millions of years.

  10. Spatio-temporal dynamics of biogeochemical processes and air-sea CO2 fluxes in the Western English Channel based on two years of FerryBox deployment

    NASA Astrophysics Data System (ADS)

    Marrec, P.; Cariou, T.; Latimier, M.; Macé, E.; Morin, P.; Vernet, M.; Bozec, Y.

    2014-12-01

    From January 2011 to January 2013, a FerryBox system was installed on a Voluntary Observing Ship (VOS), which crossed the Western English Channel (WEC) between Roscoff (France) and Plymouth (UK) up to 3 times a day. The FerryBox continuously measured sea surface temperature (SST), sea surface salinity (SSS), dissolved oxygen (DO), fluorescence and partial pressure of CO2 (from April 2012) along the ferry track. Sensors were calibrated based on 714 bimonthly surface samplings with precisions of 0.016 for SSS, 3.3 μM for DO, 0.40 μg L- 1 for Chlorophyll-a (Chl-a) (based on fluorescence measurements) and 5.2 μatm for pCO2. Over the 2 years of deployment (900 crossings), we reported 9% of data lost due to technical issues and quality checked data was obtained to allow investigation of the dynamics of biogeochemical processes related to air-sea CO2 fluxes in the WEC. Based on this unprecedented high-frequency dataset, the physical structure of the WEC was assessed using SST anomalies and the presence of a thermal front was observed around the latitude 49.5°N, which divided the WEC in two main provinces: the seasonally stratified northern WEC (nWEC) and the all-year well-mixed southern WEC (sWEC). These hydrographical properties strongly influenced the spatial and inter-annual distributions of phytoplankton blooms, which were mainly limited by nutrients and light availability in the nWEC and the sWEC, respectively. Air-sea CO2 fluxes were also highly related to hydrographical properties of the WEC between late April and early September 2012, with the sWEC a weak source of CO2 to the atmosphere of 0.9 mmol m- 2 d- 1, whereas the nWEC acted as a sink for atmospheric CO2 of 6.9 mmol m- 2 d- 1. The study of short time-scale dynamics of air-sea CO2 fluxes revealed that an intense and short (less than 10 days) summer bloom in the nWEC contributed to 29% of the CO2 sink during the productive period, highlighting the necessity for high frequency observations in coastal

  11. Biogeochemical processes controlling the mobility of major ions and trace metals in aquitard sediments beneath an oil sand tailing pond: laboratory studies and reactive transport modeling.

    PubMed

    Holden, A A; Haque, S E; Mayer, K U; Ulrich, A C

    2013-08-01

    Increased production and expansion of the oil sand industry in Alberta are of great benefit to the economy, but they carry major environmental challenges. The volume of fluid fine tailings requiring storage is 840×10(6) m(3) and growing, making it imperative that we better understand the fate and transport of oil sand process-affected water (OSPW) seepage from these facilities. Accordingly, the current study seeks to characterize both a) the potential for major ion and trace element release, and b) the principal biogeochemical processes involved, as tailing pond OSPW infiltrates into, and interacts with, underlying glacial till sediments prior to reaching down gradient aquifers or surface waters. Objectives were addressed through a series of aqueous and solid phase experiments, including radial diffusion cells, an isotope analysis, X-ray diffraction, and sequential extractions. The diffusion cells were also simulated in a reactive transport framework to elucidate key reaction processes. The experiments indicate that the ingress and interaction of OSPW with the glacial till sediment-pore water system will result in: a mitigation of ingressing Na (retardation), displacement and then limited precipitation of exchangeable Ca and Mg (as carbonates), sulfate reduction and subsequent precipitation of the produced sulfides, as well as biodegradation of organic carbon. High concentrations of ingressing Cl (~375 mg L(-1)) and Na (~575 mg L(-1)) (even though the latter is delayed, or retarded) are expected to migrate through the till and into the underlying sand channel. Trace element mobility was influenced by ion exchange, oxidation-reduction, and mineral phase reactions including reductive dissolution of metal oxyhydroxides - in accordance with previous observations within sandy aquifer settings. Furthermore, although several trace elements showed the potential for release (Al, B, Ba, Cd, Mn, Pb, Si, Sr), large-scale mobilization is not supported. Thus, the present

  12. Microbial diversity and biogeochemical cycling in soda lakes.

    PubMed

    Sorokin, Dimitry Y; Berben, Tom; Melton, Emily Denise; Overmars, Lex; Vavourakis, Charlotte D; Muyzer, Gerard

    2014-09-01

    Soda lakes contain high concentrations of sodium carbonates resulting in a stable elevated pH, which provide a unique habitat to a rich diversity of haloalkaliphilic bacteria and archaea. Both cultivation-dependent and -independent methods have aided the identification of key processes and genes in the microbially mediated carbon, nitrogen, and sulfur biogeochemical cycles in soda lakes. In order to survive in this extreme environment, haloalkaliphiles have developed various bioenergetic and structural adaptations to maintain pH homeostasis and intracellular osmotic pressure. The cultivation of a handful of strains has led to the isolation of a number of extremozymes, which allow the cell to perform enzymatic reactions at these extreme conditions. These enzymes potentially contribute to biotechnological applications. In addition, microbial species active in the sulfur cycle can be used for sulfur remediation purposes. Future research should combine both innovative culture methods and state-of-the-art 'meta-omic' techniques to gain a comprehensive understanding of the microbes that flourish in these extreme environments and the processes they mediate. Coupling the biogeochemical C, N, and S cycles and identifying where each process takes place on a spatial and temporal scale could unravel the interspecies relationships and thereby reveal more about the ecosystem dynamics of these enigmatic extreme environments. PMID:25156418

  13. Microbial diversity and biogeochemical cycling in soda lakes.

    PubMed

    Sorokin, Dimitry Y; Berben, Tom; Melton, Emily Denise; Overmars, Lex; Vavourakis, Charlotte D; Muyzer, Gerard

    2014-09-01

    Soda lakes contain high concentrations of sodium carbonates resulting in a stable elevated pH, which provide a unique habitat to a rich diversity of haloalkaliphilic bacteria and archaea. Both cultivation-dependent and -independent methods have aided the identification of key processes and genes in the microbially mediated carbon, nitrogen, and sulfur biogeochemical cycles in soda lakes. In order to survive in this extreme environment, haloalkaliphiles have developed various bioenergetic and structural adaptations to maintain pH homeostasis and intracellular osmotic pressure. The cultivation of a handful of strains has led to the isolation of a number of extremozymes, which allow the cell to perform enzymatic reactions at these extreme conditions. These enzymes potentially contribute to biotechnological applications. In addition, microbial species active in the sulfur cycle can be used for sulfur remediation purposes. Future research should combine both innovative culture methods and state-of-the-art 'meta-omic' techniques to gain a comprehensive understanding of the microbes that flourish in these extreme environments and the processes they mediate. Coupling the biogeochemical C, N, and S cycles and identifying where each process takes place on a spatial and temporal scale could unravel the interspecies relationships and thereby reveal more about the ecosystem dynamics of these enigmatic extreme environments.

  14. Simulation of Stochastic Processes by Coupled ODE-PDE

    NASA Technical Reports Server (NTRS)

    Zak, Michail

    2008-01-01

    A document discusses the emergence of randomness in solutions of coupled, fully deterministic ODE-PDE (ordinary differential equations-partial differential equations) due to failure of the Lipschitz condition as a new phenomenon. It is possible to exploit the special properties of ordinary differential equations (represented by an arbitrarily chosen, dynamical system) coupled with the corresponding Liouville equations (used to describe the evolution of initial uncertainties in terms of joint probability distribution) in order to simulate stochastic processes with the proscribed probability distributions. The important advantage of the proposed approach is that the simulation does not require a random-number generator.

  15. Using Coupled Models to Study the Effects of River Discharge on Biogeochemical Cycling and Hypoxia in the Northern Gulf of Mexico

    NASA Technical Reports Server (NTRS)

    Penta, Bradley; Ko, D.; Gould, Richard W.; Arnone, Robert A.; Greene, R.; Lehrter, J.; Hagy, James; Schaeffer, B.; Murrell, M.; Kurtz, J.; Herchenroder, B.; Green, R.; Eldridge, P.

    2009-01-01

    We describe emerging capabilities to understand physical processes and biogeoehemical cycles in coastal waters through the use of satellites, numerical models, and ship observations. Emerging capabilities provide significantly improved ability to model ecological systems and the impact of environmental management actions on them. The complex interaction of physical and biogeoehemical processes responsible for hypoxic events requires an integrated approach to research, monitoring, and modeling in order to fully define the processes leading to hypoxia. Our efforts characterizes the carbon cycle associated with river plumes and the export of organic matter and nutrients form coastal Louisiana wetlands and embayments in a spatially and temporally intensive manner previously not possible. Riverine nutrients clearly affect ecosystems in the northern Gulf of Mexico as evidenced in the occurrence of regional hypoxia events. Less known and largely unqualified is the export of organic matter and nutrients from the large areas of disappearing coastal wetlands and large embayments adjacent to the Louisiana Continental Shelf. This project provides new methods to track the river plume along the shelf and to estimate the rate of export of suspended inorganic and organic paniculate matter and dissolved organic matter form coastal habitats of south Louisiana.

  16. PFLOTRAN: Recent Developments Facilitating Massively-Parallel Reactive Biogeochemical Transport

    NASA Astrophysics Data System (ADS)

    Hammond, G. E.

    2015-12-01

    With the recent shift towards modeling carbon and nitrogen cycling in support of climate-related initiatives, emphasis has been placed on incorporating increasingly mechanistic biogeochemistry within Earth system models to more accurately predict the response of terrestrial processes to natural and anthropogenic climate cycles. PFLOTRAN is an open-source subsurface code that is specialized for simulating multiphase flow and multicomponent biogeochemical transport on supercomputers. The object-oriented code was designed with modularity in mind and has been coupled with several third-party simulators (e.g. CLM to simulate land surface processes and E4D for coupled hydrogeophysical inversion). Central to PFLOTRAN's capabilities is its ability to simulate tightly-coupled reactive transport processes. This presentation focuses on recent enhancements to the code that enable the solution of large parameterized biogeochemical reaction networks with numerous chemical species. PFLOTRAN's "reaction sandbox" is described, which facilitates the implementation of user-defined reaction networks without the need for a comprehensive understanding of PFLOTRAN software infrastructure. The reaction sandbox is written in modern Fortran (2003-2008) and leverages encapsulation, inheritance, and polymorphism to provide the researcher with a flexible workspace for prototyping reactions within a massively parallel flow and transport simulation framework. As these prototypical reactions mature into well-accepted implementations, they can be incorporated into PFLOTRAN as native biogeochemistry capability. Users of the reaction sandbox are encouraged to upload their source code to PFLOTRAN's main source code repository, including the addition of simple regression tests to better ensure the long-term code compatibility and validity of simulation results.

  17. Investigating redox processes under diffusive and advective flow conditions using a coupled omics and synchrotron approach

    NASA Astrophysics Data System (ADS)

    Kemner, K. M.; Boyanov, M.; Flynn, T. M.; O'Loughlin, E. J.; Antonopoulos, D. A.; Kelly, S.; Skinner, K.; Mishra, B.; Brooks, S. C.; Watson, D. B.; Wu, W. M.

    2015-12-01

    FeIII- and SO42--reducing microorganisms and the mineral phases they produce have profound implications for many processes in aquatic and terrestrial systems. In addition, many of these microbially-catalysed geochemical transformations are highly dependent upon introduction of reactants via advective and diffusive hydrological transport. We have characterized microbial communities from a set of static microcosms to test the effect of ethanol diffusion and sulfate concentration on UVI-contaminated sediment. The spatial distribution, valence states, and speciation of both U and Fe were monitored in situ throughout the experiment by synchrotron x-ray absorption spectroscopy, in parallel with solution measurements of pH and the concentrations of sulfate, ethanol, and organic acids. After reaction initiation, a ~1-cm thick layer of sediment near the sediment-water (S-W) interface became visibly dark. Fe XANES spectra of the layer were consistent with the formation of FeS. Over the 4 year duration of the experiment, U LIII-edge XANES indicated reduction of U, first in the dark layer and then throughout the sediment. Next, the microcosms were disassembled and samples were taken from the overlying water and different sediment regions. We extracted DNA and characterized the microbial community by sequencing 16S rRNA gene amplicons with the Illumina MiSeq platform and found that the community evolved from its originally homogeneous composition, becoming significantly spatially heterogeneous. We have also developed an x-ray accessible column to probe elemental transformations as they occur along the flow path in a porous medium with the purpose of refining reactive transport models (RTMs) that describe coupled physical and biogeochemical processes in environmental systems. The elemental distribution dynamics and the RTMs of the redox driven processes within them will be presented.

  18. Gene regulation and noise reduction by coupling of stochastic processes

    NASA Astrophysics Data System (ADS)

    Ramos, Alexandre F.; Hornos, José Eduardo M.; Reinitz, John

    2015-02-01

    Here we characterize the low-noise regime of a stochastic model for a negative self-regulating binary gene. The model has two stochastic variables, the protein number and the state of the gene. Each state of the gene behaves as a protein source governed by a Poisson process. The coupling between the two gene states depends on protein number. This fact has a very important implication: There exist protein production regimes characterized by sub-Poissonian noise because of negative covariance between the two stochastic variables of the model. Hence the protein numbers obey a probability distribution that has a peak that is sharper than those of the two coupled Poisson processes that are combined to produce it. Biochemically, the noise reduction in protein number occurs when the switching of the genetic state is more rapid than protein synthesis or degradation. We consider the chemical reaction rates necessary for Poisson and sub-Poisson processes in prokaryotes and eucaryotes. Our results suggest that the coupling of multiple stochastic processes in a negative covariance regime might be a widespread mechanism for noise reduction.

  19. Gene regulation and noise reduction by coupling of stochastic processes.

    PubMed

    Ramos, Alexandre F; Hornos, José Eduardo M; Reinitz, John

    2015-02-01

    Here we characterize the low-noise regime of a stochastic model for a negative self-regulating binary gene. The model has two stochastic variables, the protein number and the state of the gene. Each state of the gene behaves as a protein source governed by a Poisson process. The coupling between the two gene states depends on protein number. This fact has a very important implication: There exist protein production regimes characterized by sub-Poissonian noise because of negative covariance between the two stochastic variables of the model. Hence the protein numbers obey a probability distribution that has a peak that is sharper than those of the two coupled Poisson processes that are combined to produce it. Biochemically, the noise reduction in protein number occurs when the switching of the genetic state is more rapid than protein synthesis or degradation. We consider the chemical reaction rates necessary for Poisson and sub-Poisson processes in prokaryotes and eucaryotes. Our results suggest that the coupling of multiple stochastic processes in a negative covariance regime might be a widespread mechanism for noise reduction.

  20. Operator-splitting errors in coupled reactive transport codes for flow and transport under atmospheric boundary conditions or layered soil profiles

    Technology Transfer Automated Retrieval System (TEKTRAN)

    One possible way of integrating subsurface flow and transport processes with (bio)geochemical reactions is to couple by means of an operator-splitting approach two completely separate codes, one for variably-saturated flow and solute transport and one for equilibrium and kinetic biogeochemical react...

  1. Land-atmosphere CO2 exchange simulated by a land surface process model coupled to an atmospheric general circulation model

    NASA Astrophysics Data System (ADS)

    Bonan, Gordon B.

    1995-02-01

    CO2 uptake during plant photosynthesis and CO2 loss during plant and microbial respiration were added to a land surface process model to simulate the diurnal and annual cycles of biosphere-atmosphere CO2 exchange. The model was coupled to a modified version of the National Center for Atmospheric Research (NCAR) Community Climate Model version 2 (CCM2), and the coupled model was run for 5 years. The geographic patterns of annual net primary production are qualitatively similar to other models. When compared by vegetation type, annual production and annual microbial respiration are consistent with other models, except for needleleaf evergreen tree vegetation, where production is too high, and semidesert vegetation, where production and microbial respiration are too low. The seasonality of the net CO2 flux agrees with other models in the southern hemisphere and the tropics. The diurnal range is large for photosynthesis and lower for plant and microbial respiration, which agrees with qualitative expectations. The simulation of the central United States is poor due to temperature and precipitation biases in the coupled model. Despite these deficiencies the current approach is a promising means to include terrestrial CO2 fluxes in a climate system model that simulates atmospheric CO2 concentrations, because it alleviates important parameterization discrepancies between standard biogeochemical models and the land surface models typically used in general circulation models, and because the model resolves the diurnal range of CO2 exchange, which can be large (15 - 45 micromol CO2 sq m/s).

  2. Method of processing materials using an inductively coupled plasma

    DOEpatents

    Hull, D.E.; Bieniewski, T.M.

    1987-04-13

    A method of processing materials. The invention enables ultrafine, ultrapure powders to be formed from solid ingots in a gas free environment. A plasma is formed directly from an ingot which insures purity. The vaporized material is expanded through a nozzle and the resultant powder settles on a cold surface. An inductively coupled plasma may also be used to process waste chemicals. Noxious chemicals are directed through a series of plasma tubes, breaking molecular bonds and resulting in relatively harmless atomic constituents. 3 figs.

  3. Drift-Scale Coupled Processes (DST and THC Seepage) Models

    SciTech Connect

    E. Gonnenthal; N. Spyoher

    2001-02-05

    The purpose of this Analysis/Model Report (AMR) is to document the Near-Field Environment (NFE) and Unsaturated Zone (UZ) models used to evaluate the potential effects of coupled thermal-hydrologic-chemical (THC) processes on unsaturated zone flow and transport. This is in accordance with the ''Technical Work Plan (TWP) for Unsaturated Zone Flow and Transport Process Model Report'', Addendum D, Attachment D-4 (Civilian Radioactive Waste Management System (CRWMS) Management and Operating Contractor (M and O) 2000 [153447]) and ''Technical Work Plan for Nearfield Environment Thermal Analyses and Testing'' (CRWMS M and O 2000 [153309]). These models include the Drift Scale Test (DST) THC Model and several THC seepage models. These models provide the framework to evaluate THC coupled processes at the drift scale, predict flow and transport behavior for specified thermal loading conditions, and predict the chemistry of waters and gases entering potential waste-emplacement drifts. The intended use of this AMR is to provide input for the following: (1) Performance Assessment (PA); (2) Abstraction of Drift-Scale Coupled Processes AMR (ANL-NBS-HS-000029); (3) UZ Flow and Transport Process Model Report (PMR); and (4) Near-Field Environment (NFE) PMR. The work scope for this activity is presented in the TWPs cited above, and summarized as follows: continue development of the repository drift-scale THC seepage model used in support of the TSPA in-drift geochemical model; incorporate heterogeneous fracture property realizations; study sensitivity of results to changes in input data and mineral assemblage; validate the DST model by comparison with field data; perform simulations to predict mineral dissolution and precipitation and their effects on fracture properties and chemistry of water (but not flow rates) that may seep into drifts; submit modeling results to the TDMS and document the models. The model development, input data, sensitivity and validation studies described in

  4. Drift-Scale Coupled Processes (DST and THC Seepage) Models

    SciTech Connect

    E. Sonnenthale

    2001-04-16

    The purpose of this Analysis/Model Report (AMR) is to document the Near-Field Environment (NFE) and Unsaturated Zone (UZ) models used to evaluate the potential effects of coupled thermal-hydrologic-chemical (THC) processes on unsaturated zone flow and transport. This is in accordance with the ''Technical Work Plan (TWP) for Unsaturated Zone Flow and Transport Process Model Report'', Addendum D, Attachment D-4 (Civilian Radioactive Waste Management System (CRWMS) Management and Operating Contractor (M&O) 2000 [1534471]) and ''Technical Work Plan for Nearfield Environment Thermal Analyses and Testing'' (CRWMS M&O 2000 [153309]). These models include the Drift Scale Test (DST) THC Model and several THC seepage models. These models provide the framework to evaluate THC coupled processes at the drift scale, predict flow and transport behavior for specified thermal loading conditions, and predict the chemistry of waters and gases entering potential waste-emplacement drifts. The intended use of this AMR is to provide input for the following: Performance Assessment (PA); Near-Field Environment (NFE) PMR; Abstraction of Drift-Scale Coupled Processes AMR (ANL-NBS-HS-000029); and UZ Flow and Transport Process Model Report (PMR). The work scope for this activity is presented in the TWPs cited above, and summarized as follows: Continue development of the repository drift-scale THC seepage model used in support of the TSPA in-drift geochemical model; incorporate heterogeneous fracture property realizations; study sensitivity of results to changes in input data and mineral assemblage; validate the DST model by comparison with field data; perform simulations to predict mineral dissolution and precipitation and their effects on fracture properties and chemistry of water (but not flow rates) that may seep into drifts; submit modeling results to the TDMS and document the models. The model development, input data, sensitivity and validation studies described in this AMR are required

  5. MOUNTAIN-SCALE COUPLED PROCESSES (TH/THC/THM)MODELS

    SciTech Connect

    Y.S. Wu

    2005-08-24

    This report documents the development and validation of the mountain-scale thermal-hydrologic (TH), thermal-hydrologic-chemical (THC), and thermal-hydrologic-mechanical (THM) models. These models provide technical support for screening of features, events, and processes (FEPs) related to the effects of coupled TH/THC/THM processes on mountain-scale unsaturated zone (UZ) and saturated zone (SZ) flow at Yucca Mountain, Nevada (BSC 2005 [DIRS 174842], Section 2.1.1.1). The purpose and validation criteria for these models are specified in ''Technical Work Plan for: Near-Field Environment and Transport: Coupled Processes (Mountain-Scale TH/THC/THM, Drift-Scale THC Seepage, and Drift-Scale Abstraction) Model Report Integration'' (BSC 2005 [DIRS 174842]). Model results are used to support exclusion of certain FEPs from the total system performance assessment for the license application (TSPA-LA) model on the basis of low consequence, consistent with the requirements of 10 CFR 63.342 [DIRS 173273]. Outputs from this report are not direct feeds to the TSPA-LA. All the FEPs related to the effects of coupled TH/THC/THM processes on mountain-scale UZ and SZ flow are discussed in Sections 6 and 7 of this report. The mountain-scale coupled TH/THC/THM processes models numerically simulate the impact of nuclear waste heat release on the natural hydrogeological system, including a representation of heat-driven processes occurring in the far field. The mountain-scale TH simulations provide predictions for thermally affected liquid saturation, gas- and liquid-phase fluxes, and water and rock temperature (together called the flow fields). The main focus of the TH model is to predict the changes in water flux driven by evaporation/condensation processes, and drainage between drifts. The TH model captures mountain-scale three-dimensional flow effects, including lateral diversion and mountain-scale flow patterns. The mountain-scale THC model evaluates TH effects on water and gas

  6. Calcium dynamics in astrocyte processes during neurovascular coupling

    PubMed Central

    Otsu, Yo; Couchman, Kiri; Lyons, Declan G; Collot, Mayeul; Agarwal, Amit; Mallet, Jean-Maurice; Pfrieger, Frank W; Bergles, Dwight E; Charpak, Serge

    2015-01-01

    Enhanced neuronal activity in the brain triggers a local increase in blood flow, termed functional hyperemia, via several mechanisms, including calcium (Ca2+) signaling in astrocytes. However, recent in vivo studies have questioned the role of astrocytes in functional hyperemia because of the slow and sparse dynamics of their somatic Ca2+ signals and the absence of glutamate metabotropic receptor 5 in adults. Here, we reexamined their role in neurovascular coupling by selectively expressing a genetically encoded Ca2+ sensor in astrocytes of the olfactory bulb. We show that in anesthetized mice, the physiological activation of olfactory sensory neuron (OSN) terminals reliably triggers Ca2+ increases in astrocyte processes but not in somata. These Ca2+ increases systematically precede the onset of functional hyperemia by 1–2 s, reestablishing astrocytes as potential regulators of neurovascular coupling. PMID:25531572

  7. Model coupling for predicting a developmental patterning process

    NASA Astrophysics Data System (ADS)

    Dhulekar, Nimit; Oztan, Basak; Yener, Bülent

    2016-03-01

    Physics-based-theoretical models have been used to predict developmental patterning processes such as branching morphogenesis for over half a century. While such techniques are quite successful in understanding the patterning processes in organs such as the lung and the kidney, they are unable to accurately model the processes in other organs such as the submandibular salivary gland. One possible reason is the detachment of these models from data that describe the underlying biological process. This hypothesis coupled with the increasing availability of high quality data has made discrete, data-driven models attractive alternatives. These models are based on extracting features from data to describe the patterns and their time evolving multivariate statistics. These discrete models have low computational complexity and comparable or better accuracy than the continuous models. This paper presents a case study for coupling continuous-physics-based and discrete-empirical-models to address the prediction of cleft formation during the early stages of branching morphogenesis in mouse submandibular salivary glands (SMG). Given a time-lapse movie of a growing SMG, first we build a descriptive model that captures the underlying biological process and quantifies this ground truth. Tissue-scale (global) morphological features are used to characterize the biological ground truth. Second, we formulate a predictive model using the level-set method that simulates branching morphogenesis. This model successfully predicts the topological evolution, however, it is blind to the cellular organization, and cell-to-cell interactions occurring inside a gland; information that is available in the image data. Our primary objective via this study is to couple the continuous level set model with a discrete graph theory model that captures the cellular organization but ignores the forces that determine the evolution of the gland surface, i.e. formation of clefts and buds. We compared the

  8. Modeling Coupled Processes in Clay Formations for Radioactive Waste Disposal

    SciTech Connect

    Liu, Hui-Hai; Rutqvist, Jonny; Zheng, Liange; Sonnenthal, Eric; Houseworth, Jim; Birkholzer, Jens

    2010-08-31

    As a result of the termination of the Yucca Mountain Project, the United States Department of Energy (DOE) has started to explore various alternative avenues for the disposition of used nuclear fuel and nuclear waste. The overall scope of the investigation includes temporary storage, transportation issues, permanent disposal, various nuclear fuel types, processing alternatives, and resulting waste streams. Although geologic disposal is not the only alternative, it is still the leading candidate for permanent disposal. The realm of geologic disposal also offers a range of geologic environments that may be considered, among those clay shale formations. Figure 1-1 presents the distribution of clay/shale formations within the USA. Clay rock/shale has been considered as potential host rock for geological disposal of high-level nuclear waste throughout the world, because of its low permeability, low diffusion coefficient, high retention capacity for radionuclides, and capability to self-seal fractures induced by tunnel excavation. For example, Callovo-Oxfordian argillites at the Bure site, France (Fouche et al., 2004), Toarcian argillites at the Tournemire site, France (Patriarche et al., 2004), Opalinus clay at the Mont Terri site, Switzerland (Meier et al., 2000), and Boom clay at Mol site, Belgium (Barnichon et al., 2005) have all been under intensive scientific investigations (at both field and laboratory scales) for understanding a variety of rock properties and their relations with flow and transport processes associated with geological disposal of nuclear waste. Clay/shale formations may be generally classified as indurated and plastic clays (Tsang et al., 2005). The latter (including Boom clay) is a softer material without high cohesion; its deformation is dominantly plastic. For both clay rocks, coupled thermal, hydrological, mechanical and chemical (THMC) processes are expected to have a significant impact on the long-term safety of a clay repository. For

  9. BIOGEOCHEMICAL STUDIES OF PHOTOSYNTHETIC MICROBIAL MATS AND THEIR BIOTA

    NASA Technical Reports Server (NTRS)

    DesMarais, David; Discipulo, M.; Turk, K.; Londry, K. L.

    2005-01-01

    Photosynthetic microbial mats offer an opportunity to define holistic functionality at the millimeter scale. At the same time. their biogeochemistry contributes to environmental processes on a planetary scale. These mats are possibly direct descendents of the most ancient biological communities; communities in which oxygenic photosynthesis might have been invented. Mats provide one of the best natural systems to study how microbial populations associate to control dynamic biogeochemical gradients. These are self- sustaining, complete ecosystems in which light energy absorbed over a dial (24 hour) cycle drives the synthesis of spatially-organized, diverse biomass. Tightly-coupled microorganisms in the mat have specialized metabolisms that catalyze transformations of carbon, nitrogen, sulfur, and a host of other elements.

  10. Model-based risk analysis of coupled process steps.

    PubMed

    Westerberg, Karin; Broberg-Hansen, Ernst; Sejergaard, Lars; Nilsson, Bernt

    2013-09-01

    A section of a biopharmaceutical manufacturing process involving the enzymatic coupling of a polymer to a therapeutic protein was characterized with regards to the process parameter sensitivity and design space. To minimize the formation of unwanted by-products in the enzymatic reaction, the substrate was added in small amounts and unreacted protein was separated using size-exclusion chromatography (SEC) and recycled to the reactor. The quality of the final recovered product was thus a result of the conditions in both the reactor and the SEC, and a design space had to be established for both processes together. This was achieved by developing mechanistic models of the reaction and SEC steps, establishing the causal links between process conditions and product quality. Model analysis was used to complement the qualitative risk assessment, and design space and critical process parameters were identified. The simulation results gave an experimental plan focusing on the "worst-case regions" in terms of product quality and yield. In this way, the experiments could be used to verify both the suggested process and the model results. This work demonstrates the necessary steps of model-assisted process analysis, from model development through experimental verification.

  11. Thermodynamic constraints on the utility of ecological stoichiometry for explaining global biogeochemical patterns.

    PubMed

    Helton, Ashley M; Ardón, Marcelo; Bernhardt, Emily S

    2015-10-01

    Carbon and nitrogen cycles are coupled through both stoichiometric requirements for microbial biomass and dissimilatory metabolic processes in which microbes catalyse reduction-oxidation reactions. Here, we integrate stoichiometric theory and thermodynamic principles to explain the commonly observed trade-off between high nitrate and high organic carbon concentrations, and the even stronger trade-off between high nitrate and high ammonium concentrations, across a wide range of aquatic ecosystems. Our results suggest these relationships are the emergent properties of both microbial biomass stoichiometry and the availability of terminal electron acceptors. Because elements with multiple oxidation states (i.e. nitrogen, manganese, iron and sulphur) serve as both nutrients and sources of chemical energy in reduced environments, both assimilative demand and dissimilatory uses determine their concentrations across broad spatial gradients. Conceptual and quantitative models that integrate rather than independently examine thermodynamic, stoichiometric and evolutionary controls on biogeochemical cycling are essential for understanding local to global biogeochemical patterns. PMID:26259672

  12. Thermodynamic constraints on the utility of ecological stoichiometry for explaining global biogeochemical patterns.

    PubMed

    Helton, Ashley M; Ardón, Marcelo; Bernhardt, Emily S

    2015-10-01

    Carbon and nitrogen cycles are coupled through both stoichiometric requirements for microbial biomass and dissimilatory metabolic processes in which microbes catalyse reduction-oxidation reactions. Here, we integrate stoichiometric theory and thermodynamic principles to explain the commonly observed trade-off between high nitrate and high organic carbon concentrations, and the even stronger trade-off between high nitrate and high ammonium concentrations, across a wide range of aquatic ecosystems. Our results suggest these relationships are the emergent properties of both microbial biomass stoichiometry and the availability of terminal electron acceptors. Because elements with multiple oxidation states (i.e. nitrogen, manganese, iron and sulphur) serve as both nutrients and sources of chemical energy in reduced environments, both assimilative demand and dissimilatory uses determine their concentrations across broad spatial gradients. Conceptual and quantitative models that integrate rather than independently examine thermodynamic, stoichiometric and evolutionary controls on biogeochemical cycling are essential for understanding local to global biogeochemical patterns.

  13. Measurement of coupled soil heat and water processes

    NASA Astrophysics Data System (ADS)

    Heitman, Joshua L.

    2007-12-01

    Coupled soil heat and water processes are critical for terrestrial life at all scales. Yet detailed understanding of these processes is limited. Inability to measure fine-scale, transient, one-dimensional (1-D) heat and water redistribution encumbers laboratory and field experiments and restricts testing of theory. The impetus for this work is to strengthen understanding of soil heat and water processes through improved measurement. Objectives were to (1) Develop closed soil cells with 1-D, non-isothermal conditions; (2) Measure soil temperature, water content, and thermal conductivity distributions under transient, 1-D conditions; (3) Test diffusion-based coupled heat and water transfer theory; and 4) Measure in situ soil water evaporation under dynamic field conditions. Soil-insulated, closed soil cells were developed to achieve 1-D conditions. These cells provided a 1:0.02 ratio between intended axial and unintended radial temperature gradients. The cells were instrumented with thermo-TDR sensors to measure transient temperature, water content, and thermal conductivity for two soils (sand and silt loam), two initial moistures, and ten boundary temperature gradients. Thermo-TDR water content measurements provided root mean square error (RMSE) <0.02 m3 m-3 versus gravimetric measurements. Co-located inflection points in temperature, water content, and thermal conductivity distributions indicated heat and water redistribution consistent with coupled transfer. These data were used to calibrate and test transfer theory. Adjustment of calculated vapor and liquid fluxes via the vapor enhancement factor and saturated hydraulic conductivity, respectively, reduced RMSE by an average of 36% for water content and temperature. Predictions from calibrated theory agreed with measurement when boundary and initial conditions changed gradually, but showed more disparity for drastic changes in boundary temperature conditions. In the field, a measurement-based soil heat balance was

  14. Upscalling processes in an ocean-atmosphere multiscale coupled model

    NASA Astrophysics Data System (ADS)

    Masson, S. G.; Berthet, S.; Samson, G.; Crétat, J.; Colas, F.; Echevin, V.; Jullien, S.; Hourdin, C.

    2015-12-01

    This work explores new pathways toward a better representation of the multi-scale physics that drive climate variability. We are analysing the key upscaling processes by which small-scale localized errors have a knock-on effect onto global climate. We focus on the Peru-Chilli coastal upwelling, an area known to hold among the strongest models biases in the Tropics. Our approach is based on the development of a multiscale coupling interface allowing us to couple WRF with the NEMO oceanic model in a configuration including 2-way nested zooms in the oceanic and/or the atmospheric component of the coupled model. Upscalling processes are evidenced and quantified by comparing three 20-year long simulations of a tropical channel (45°S-45°N), which differ by their horizontal resolution: 0.75° everywhere, 0.75°+0.25° zoom in the southeastern Pacific or 0.25° everywhere. This set of three 20-year long simulations was repeated with 3 different sets of parameterizations to assess the robustness of our results. Our results show that adding an embedded zoom over the southeastern Pacific only in the atmosphere cools down the SST along the Peru-Chili coast, which is a clear improvement. This change is associated with a displacement of the low-level cloud cover, which moves closer to the coast cooling further the coastal area SST. Offshore, we observe the opposite effect with a reduction of the cloud cover with higher resolution, which increases solar radiation and warms the SST. Increasing the resolution in the oceanic component show contrasting results according to the different set parameterization used in the experiments. Some experiment shows a coastal cooling as expected, whereas, in other cases, we observe a counterintuitive response with a warming of the coastal SST. Using at the same time an oceanic and an atmospheric zoom mostly combines the results obtained when using the 2-way nesting in only one component of the coupled model. In the best case, we archive by this

  15. Molecular biogeochemical provinces in the Atlantic Surface Ocean

    NASA Astrophysics Data System (ADS)

    Koch, B. P.; Flerus, R.; Schmitt-Kopplin, P.; Lechtenfeld, O. J.; Bracher, A.; Cooper, W.; Frka, S.; Gašparović, B.; Gonsior, M.; Hertkorn, N.; Jaffe, R.; Jenkins, A.; Kuss, J.; Lara, R. J.; Lucio, M.; McCallister, S. L.; Neogi, S. B.; Pohl, C.; Roettgers, R.; Rohardt, G.; Schmitt, B. B.; Stuart, A.; Theis, A.; Ying, W.; Witt, M.; Xie, Z.; Yamashita, Y.; Zhang, L.; Zhu, Z. Y.; Kattner, G.

    2010-12-01

    One of the most important aspects to understand marine organic carbon fluxes is to resolve the molecular mechanisms which convert fresh, labile biomolecules into semi-labile and refractory dissolved and particulate organic compounds in the ocean. In this interdisciplinary project, which was performed on a cruise with RV Polarstern, we carried out a detailed molecular characterisation of dissolved organic matter (DOM) on a North-South transect in the Atlantic surface ocean in order to relate the data to different biological, climatic, oceanographic, and meteorological regimes as well as to terrestrial input from riverine and atmospheric sources. Our goal was to achieve a high resolution data set for the biogeochemical characterisation of the sources and reactivity of DOM. We applied ultrahigh resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS), nutrient, trace element, amino acid, and lipid analyses and other biogeochemical measurements for 220 samples from the upper water column (0-200m) and eight deep profiles. Various spectroscopic techniques were applied continuously in a constant sample water flow supplied by a fish system and the moon pool. Radiocarbon dating enabled assessing DOC residence time. Bacterial abundance and production provided a metabolic context for the DOM characterization work and pCO2 concentrations. Combining molecular organic techniques and inductively coupled plasma mass spectrometry (ICP-MS) established an important link between organic and inorganic biogeochemical studies. Multivariate statistics, primarily based on FT-ICR-MS data for 220 samples, allowed identifying geographical clusters which matched ecological provinces proposed previously by Longhurst (2007). Our study demonstrated that marine DOM carries molecular information reflecting the “history” of ocean water masses. This information can be used to define molecular biogeochemical provinces and to improve our understanding of element fluxes in

  16. Queueing up for enzymatic processing: correlated signaling through coupled degradation

    PubMed Central

    Cookson, Natalie A; Mather, William H; Danino, Tal; Mondragón-Palomino, Octavio; Williams, Ruth J; Tsimring, Lev S; Hasty, Jeff

    2011-01-01

    High-throughput technologies have led to the generation of complex wiring diagrams as a post-sequencing paradigm for depicting the interactions between vast and diverse cellular species. While these diagrams are useful for analyzing biological systems on a large scale, a detailed understanding of the molecular mechanisms that underlie the observed network connections is critical for the further development of systems and synthetic biology. Here, we use queueing theory to investigate how ‘waiting lines' can lead to correlations between protein ‘customers' that are coupled solely through a downstream set of enzymatic ‘servers'. Using the E. coli ClpXP degradation machine as a model processing system, we observe significant cross-talk between two networks that are indirectly coupled through a common set of processors. We further illustrate the implications of enzymatic queueing using a synthetic biology application, in which two independent synthetic networks demonstrate synchronized behavior when common ClpXP machinery is overburdened. Our results demonstrate that such post-translational processes can lead to dynamic connections in cellular networks and may provide a mechanistic understanding of existing but currently inexplicable links. PMID:22186735

  17. A Fully Coupled Computational Model of the Silylation Process

    SciTech Connect

    G. H. Evans; R. S. Larson; V. C. Prantil; W. S. Winters

    1999-02-01

    This report documents the development of a new finite element model of the positive tone silylation process. Model development makes use of pre-existing Sandia technology used to describe coupled thermal-mechanical behavior in deforming metals. Material properties and constitutive models were obtained from the literature. The model is two-dimensional and transient and focuses on the part of the lithography process in which crosslinked and uncrosslinked resist is exposed to a gaseous silylation agent. The model accounts for the combined effects of mass transport (diffusion of silylation agent and reaction product), chemical reaction resulting in the uptake of silicon and material swelling, the generation of stresses, and the resulting material motion. The influence of stress on diffusion and reaction rates is also included.

  18. Fouling control of a membrane coupled photocatalytic process treating greywater.

    PubMed

    Pidou, Marc; Parsons, Simon A; Raymond, Gaëlle; Jeffrey, Paul; Stephenson, Tom; Jefferson, Bruce

    2009-09-01

    Fouling in membrane coupled photocatalytic reactors was investigated in the case of greywater treatment by establishing the link between product type, dose, irradiation time and fouling rates in a cross flow membrane cell fitted with a 0.4 microm pore sized polyethylene membrane. Rapid fouling occurred only with shower gels and conditioners and was linked to changes in the organo-TiO(2) aggregate size postulated to be caused by polymers within the products. Fouling was reduced to a negligible level when sufficient irradiation was applied demonstrating that the membrane component of the process is not the issue and that scale up and implementation of the process relates to effective design of the UV reactor.

  19. Evaluation of biogeochemical cycles in an ensemble of three state-of-the-art numerical models of the Baltic Sea

    NASA Astrophysics Data System (ADS)

    Eilola, K.; Gustafsson, B. G.; Kuznetsov, I.; Meier, H. E. M.; Neumann, T.; Savchuk, O. P.

    2011-11-01

    Three state-of-the-art coupled physical-biogeochemical models, the BAltic sea Long-Term large-Scale Eutrophication Model (BALTSEM), the Ecological Regional Ocean Model (ERGOM), and the Swedish Coastal and Ocean Biogeochemical model coupled to the Rossby Centre Ocean circulation model (RCO-SCOBI), are used to calculate changing nutrient and oxygen dynamics in the Baltic Sea. The models are different in that ERGOM and RCO-SCOBI are three-dimensional (3D) circulation models while BALTSEM resolves the Baltic Sea into 13 dynamically interconnected and horizontally integrated sub-basins. The aim is to assess the simulated long-term dynamics and to discuss the response of the coupled physical-biogeochemical models to changing physical conditions and nutrient loadings during the period 1970-2005. We compared the long-term seasonal and annual statistics of inorganic nitrogen, phosphorus, and oxygen from hindcast simulations with those estimated from observations. We also studied the extension of hypoxic bottom areas covered by waters with O 2 < 2 ml O 2 l - 1 and cod reproductive volumes comprising waters with salinity > 11 and O 2 > 2 ml O 2 l - 1 . The models reproduce much of the nutrient biogeochemical cycling in the Baltic proper. However, biases are larger in the Bothnian Sea and Bothnian Bay. No model shows outstanding performance in all aspects but instead the ensemble mean results are better than or as good as the results of any of the individual models. Uncertainties are primarily related to differences in the bioavailable fractions of nutrient loadings from land and parameterizations of key processes like sediment fluxes that are presently not well known. Also the uncertainty related to the initialization of the models in the early 1960s influence the modeled biogeochemical cycles during the investigated period.

  20. Biogeochemical processes in an urban, restored wetland of San Francisco Bay, California, 2007-2009; methods and data for plant, sediment and water parameters

    USGS Publications Warehouse

    Windham-Myers, Lisamarie; Marvin-DiPasquale, Mark C.; Agee, Jennifer L.; Kieu, Le H.; Kakouros, Evangelos; Erikson, Li H.; Ward, Kristen

    2010-01-01

    The restoration of 18 acres of historic tidal marsh at Crissy Field has had great success in terms of public outreach and visibility, but less success in terms of revegetated marsh sustainability. Native cordgrass (Spartina foliosa) has experienced dieback and has failed to recolonize following extended flooding events during unintended periodic closures of its inlet channel, which inhibits daily tidal flushing. We examined the biogeochemical impacts of these impoundment events on plant physiology and on sulfur and mercury chemistry to help the National Park Service land managers determine the relative influence of these inlet closures on marsh function. In this comparative study, we examined key pools of sulfur, mercury, and carbon compounds both during and between closure events. Further, we estimated the net hydrodynamic flux of methylmercury and total mercury to and from the marsh during a 24-hour diurnal cycle. This report documents the methods used and the data generated during the study.

  1. Drift-Scale Coupled Processes (DST and THC Seepage) Models

    SciTech Connect

    P. Dixon

    2004-04-05

    The purpose of this Model Report (REV02) is to document the unsaturated zone (UZ) models used to evaluate the potential effects of coupled thermal-hydrological-chemical (THC) processes on UZ flow and transport. This Model Report has been developed in accordance with the ''Technical Work Plan for: Performance Assessment Unsaturated Zone'' (Bechtel SAIC Company, LLC (BSC) 2002 [160819]). The technical work plan (TWP) describes planning information pertaining to the technical scope, content, and management of this Model Report in Section 1.12, Work Package AUZM08, ''Coupled Effects on Flow and Seepage''. The plan for validation of the models documented in this Model Report is given in Attachment I, Model Validation Plans, Section I-3-4, of the TWP. Except for variations in acceptance criteria (Section 4.2), there were no deviations from this TWP. This report was developed in accordance with AP-SIII.10Q, ''Models''. This Model Report documents the THC Seepage Model and the Drift Scale Test (DST) THC Model. The THC Seepage Model is a drift-scale process model for predicting the composition of gas and water that could enter waste emplacement drifts and the effects of mineral alteration on flow in rocks surrounding drifts. The DST THC model is a drift-scale process model relying on the same conceptual model and much of the same input data (i.e., physical, hydrological, thermodynamic, and kinetic) as the THC Seepage Model. The DST THC Model is the primary method for validating the THC Seepage Model. The DST THC Model compares predicted water and gas compositions, as well as mineral alteration patterns, with observed data from the DST. These models provide the framework to evaluate THC coupled processes at the drift scale, predict flow and transport behavior for specified thermal-loading conditions, and predict the evolution of mineral alteration and fluid chemistry around potential waste emplacement drifts. The DST THC Model is used solely for the validation of the THC

  2. Biogeochemical Cycles in Degraded Lands

    NASA Technical Reports Server (NTRS)

    Davidson, Eric A.; Vieira, Ima Celia G.; ReisdeCarvalho, Claudio Jose; DeanedeAbreuSa, Tatiana; deSouzaMoutinho, Paulo R.; Figueiredo, Ricardo O.; Stone, Thomas A.

    2004-01-01

    The objectives of this project were to define and describe the types of landscapes that fall under the broad category of "degraded lands" and to study biogeochemical cycles across this range of degradation found in secondary forests. We define degraded land as that which has lost part of its capacity of renovation of a productive ecosystem, either in the context of agroecosystems or as native communities of vegetation. This definition of degradation permits evaluation of biogeochemical constraints to future land uses.

  3. Biogeochemical Cycles in Degraded Lands

    NASA Technical Reports Server (NTRS)

    Davidson, Eric A.; Vieira, Ima Celia G.; ReisdeCarvalho, Claudio Jose; DeaneDeAbreuSa, Tatiana; deSpozaMoutinho, Paulo R.; Figueiredo, Ricardo O.; Stone, Thomas A.

    2003-01-01

    The objectives of this project were to define and describe the types of landscapes that fall under the broad category of "degraded lands" and to study biogeochemical cycles across this range of degradation found in secondary forests. We define degraded land as that which has lost part of its capacity of renovation of a productive ecosystem, either in the context of agroecosystems or as native communities of vegetation. This definition of degradation permits evaluation of biogeochemical constraints to future land uses.

  4. Quantifying biogeochemical responses to hydrological perturbations in terrestrial systems using geophysical monitoring and inversion schemes

    NASA Astrophysics Data System (ADS)

    Hubbard, S. S.; Dafflon, B.; Tran, A. P.; Chen, J.; Wainwright, H. M.

    2015-12-01

    Although recognized that terrestrial hydrological processes drive a variety of biogeochemical processes, quantifying interactions that occur across a range of scales and compartments is challenging. We describe recently developed approaches to quantify these interactions, and demonstrate the value of developed approaches in two different terrestrial systems. The first is a relatively flat Arctic tundra polygonal ground system, where snowmelt-dominated, surface water distribution significantly influences soil microbial activity and resulting production of greenhouse gasses. The second is a Colorado River floodplain-catchment, where a transient snowmelt pulse leads to hydrological and biogeochemical interactions between different compartents of the system. Three capabilties were developed to improve understanding of hydrology influences on biogeochemistry at these sites. The first is a networked sensing system that coincidently measures below-, at- and above-ground critical properties (such as soil moisture, soil temperature, canopy greenness, surface water inundation, active layer depth, and snow thickness). The approach takes advantage of autonomous data acquisition using unmanned aerial vehicles, tram-based sensors, and surface geophysical approaches. The dense datasets enable 'visualization' of interactions that occur across compartments in response to freeze-thaw and runoff processes. The second advance is the development of a coupled hydro-thermal-geophysical inversion scheme that takes advantage of spatially extensive geophysical data as well as direct but sparse measurements in the quantitative estimation of terrestrial responses to hydrological perturbations. The third is the development of stochastic 'zonation' approaches, which use multi-type, multi-scale datasets to identify regions in the landscape that have unique distributions of properties that influence biogeochemical cycling. Together, the sensing, modeling, and integrative functional zonation

  5. Anomalous diffusion and scaling in coupled stochastic processes

    SciTech Connect

    Bel, Golan; Nemenman, Ilya

    2009-01-01

    Inspired by problems in biochemical kinetics, we study statistical properties of an overdamped Langevin processes with the friction coefficient depending on the state of a similar, unobserved, process. Integrating out the latter, we derive the Pocker-Planck the friction coefficient of the first depends on the state of the second. Integrating out the latter, we derive the Focker-Planck equation for the probability distribution of the former. This has the fonn of diffusion equation with time-dependent diffusion coefficient, resulting in an anomalous diffusion. The diffusion exponent can not be predicted using a simple scaling argument, and anomalous scaling appears as well. The diffusion exponent of the Weiss-Havlin comb model is derived as a special case, and the same exponent holds even for weakly coupled processes. We compare our theoretical predictions with numerical simulations and find an excellent agreement. The findings caution against treating biochemical systems with unobserved dynamical degrees of freedom by means of standandard, diffusive Langevin descritpion.

  6. Quantifying the resilience of biogeochemical cycles to environmental change in complex aquatic landscapes

    NASA Astrophysics Data System (ADS)

    Hipsey, M. R.

    2014-12-01

    It is well established that aquatic environments such as lakes, rivers and estuaries display complex system properties in response to anthropogenic forcing. Whilst our ability to characterize these dynamics and model them has advanced considerably for ideal systems, it remains difficult to investigate them across more complex aquatic landscapes. New model approaches are required that are able to accommodate spatial heterogeneity, connectivity between both terrestrial and aquatic sub-systems, and that are suited to capture the complex feedback and co-evolution processes that shape the signatures we observe in biogeochemical cycles. A way forward lies in the integration of the diversity of models of ecohydrology and aquatic system dynamics, with environmental sensing data in a way that balances process-driven and data-driven approaches for exploring landscape function, however many challenges remain. Here we report on a strategy being applied for the lower Murray River, Australia, that integrates models of terrestrial landscapes, riparian ecohydrology and surface water hydrodynamic-biogeochemical models in conjunction with sensor network data. The model system is used to quantify biogeochemical budgets and signatures that characterize individual sub-systems within the landscape, but also to quantify how the landscape as a whole responds to environmental change. Whilst such a coupled system is complex and many uncertainties exist, several theoretically relevant metrics of ecosystem function are being used to guide model validation. Further efforts to improve model predictions through assimilation of observed data using Bayesian Hierarchical Modelling are being explored.

  7. Mountain-Scale Coupled Processes (TH/THC/THM)

    SciTech Connect

    P. Dixon

    2004-02-09

    The purpose of this Model Report is to document the development of the Mountain-Scale Thermal-Hydrological (TH), Thermal-Hydrological-Chemical (THC), and Thermal-Hydrological-Mechanical (THM) Models and evaluate the effects of coupled TH/THC/THM processes on mountain-scale UZ flow at Yucca Mountain, Nevada. This Model Report was planned in ''Technical Work Plan (TWP) for: Performance Assessment Unsaturated Zone'' (BSC 2002 [160819], Section 1.12.7), and was developed in accordance with AP-SIII.10Q, Models. In this Model Report, any reference to ''repository'' means the nuclear waste repository at Yucca Mountain, and any reference to ''drifts'' means the emplacement drifts at the repository horizon. This Model Report provides the necessary framework to test conceptual hypotheses for analyzing mountain-scale hydrological/chemical/mechanical changes and predict flow behavior in response to heat release by radioactive decay from the nuclear waste repository at the Yucca Mountain site. The mountain-scale coupled TH/THC/THM processes models numerically simulate the impact of nuclear waste heat release on the natural hydrogeological system, including a representation of heat-driven processes occurring in the far field. The TH simulations provide predictions for thermally affected liquid saturation, gas- and liquid-phase fluxes, and water and rock temperature (together called the flow fields). The main focus of the TH Model is to predict the changes in water flux driven by evaporation/condensation processes, and drainage between drifts. The TH Model captures mountain-scale three dimensional (3-D) flow effects, including lateral diversion at the PTn/TSw interface and mountain-scale flow patterns. The Mountain-Scale THC Model evaluates TH effects on water and gas chemistry, mineral dissolution/precipitation, and the resulting impact to UZ hydrological properties, flow and transport. The THM Model addresses changes in permeability due to mechanical and thermal disturbances in

  8. A Generic Biogeochemical Module for Earth System Models: Next Generation BioGeoChemical Module (NGBGC), Version 1.0

    SciTech Connect

    Fang, Yilin; Huang, Maoyi; Liu, Chongxuan; Li, Hongyi; Leung, Lai-Yung R.

    2013-11-13

    Physical and biogeochemical processes regulate soil carbon dynamics and CO2 flux to and from atmosphere, influencing global climate changes. Integration of these processes into earth system models (e.g., community land models (CLM)), however, currently faces three major challenges: 1) extensive efforts are required to modify modeling structures and to rewrite computer programs to incorporate new or updated processes as new knowledge is being generated, 2) computational cost is prohibitively expensive to simulate biogeochemical processes in land models due to large variations in the rates of biogeochemical processes, and 3) various mathematical representations of biogeochemical processes exist to incorporate different aspects of fundamental mechanisms, but systematic evaluation of the different mathematical representations is difficult, if not possible. To address these challenges, we propose a new computational framework to easily incorporate physical and biogeochemical processes into land models. The new framework consists of a new biogeochemical module with a generic algorithm and reaction database so that new and updated processes can be incorporated into land models without the need to manually set up the ordinary differential equations to be solved numerically. The reaction database consists of processes of nutrient flow through the terrestrial ecosystems in plants, litter and soil. This framework facilitates effective comparison studies of biogeochemical cycles in an ecosystem using different conceptual models under the same land modeling framework. The approach was first implemented in CLM and benchmarked against simulations from the original CLM-CN code. A case study was then provided to demonstrate the advantages of using the new approach to incorporate a phosphorus cycle into the CLM model. To our knowledge, the phosphorus-incorporated CLM is a new model that can be used to simulate phosphorus limitation on the productivity of terrestrial ecosystems.

  9. [A new strategy for Chinese medicine processing technologies: coupled with individuation processed and cybernetics].

    PubMed

    Zhang, Ding-kun; Yang, Ming; Han, Xue; Lin, Jun-zhi; Wang, Jia-bo; Xiao, Xiao-he

    2015-08-01

    The stable and controllable quality of decoction pieces is an important factor to ensure the efficacy of clinical medicine. Considering the dilemma that the existing standardization of processing mode cannot effectively eliminate the variability of quality raw ingredients, and ensure the stability between different batches, we first propose a new strategy for Chinese medicine processing technologies that coupled with individuation processed and cybernetics. In order to explain this thinking, an individual study case about different grades aconite is provided. We hope this strategy could better serve for clinical medicine, and promote the inheritance and innovation of Chinese medicine processing skills and theories. PMID:26790315

  10. [A new strategy for Chinese medicine processing technologies: coupled with individuation processed and cybernetics].

    PubMed

    Zhang, Ding-kun; Yang, Ming; Han, Xue; Lin, Jun-zhi; Wang, Jia-bo; Xiao, Xiao-he

    2015-08-01

    The stable and controllable quality of decoction pieces is an important factor to ensure the efficacy of clinical medicine. Considering the dilemma that the existing standardization of processing mode cannot effectively eliminate the variability of quality raw ingredients, and ensure the stability between different batches, we first propose a new strategy for Chinese medicine processing technologies that coupled with individuation processed and cybernetics. In order to explain this thinking, an individual study case about different grades aconite is provided. We hope this strategy could better serve for clinical medicine, and promote the inheritance and innovation of Chinese medicine processing skills and theories.

  11. Biogeochemical weathering under ice: Size matters

    NASA Astrophysics Data System (ADS)

    Wadham, J. L.; Tranter, M.; Skidmore, M.; Hodson, A. J.; Priscu, J.; Lyons, W. B.; Sharp, M.; Wynn, P.; Jackson, M.

    2010-09-01

    The basal regions of continental ice sheets are gaps in our current understanding of the Earth's biosphere and biogeochemical cycles. We draw on existing and new chemical data sets for subglacial meltwaters to provide the first comprehensive assessment of sub-ice sheet biogeochemical weathering. We show that size of the ice mass is a critical control on the balance of chemical weathering processes and that microbial activity is ubiquitous in driving dissolution. Carbonate dissolution fueled by sulfide oxidation and microbial CO2 dominate beneath small valley glaciers. Prolonged meltwater residence times and greater isolation characteristic of ice sheets lead to the development of anoxia and enhanced silicate dissolution due to calcite saturation. We show that sub-ice sheet environments are highly geochemically reactive and should be considered in regional and global solute budgets. For example, calculated solute fluxes from Antarctica (72-130 t yr-1) are the same order of magnitude as those from some of the world's largest rivers and rates of chemical weathering (10-17 t km-2 yr-1) are high for the annual specific discharge (2.3-4.1 × 10-3 m). Our model of chemical weathering dynamics provides important information on subglacial biodiversity and global biogeochemical cycles and may be used to design strategies for the first sampling of Antarctic Subglacial Lakes and other sub-ice sheet environments for the next decade.

  12. Evolutionary games of condensates in coupled birth-death processes

    NASA Astrophysics Data System (ADS)

    Weber, Markus F.; Knebel, Johannes; Krueger, Torben; Frey, Erwin

    2015-03-01

    Condensation phenomena occur in many systems, both in a classical and a quantum mechanical context. Typically, the entities that constitute a system collectively concentrate in one distinct state during condensation. For example, cooling of an equilibrated bosonic gas may lead to condensation into the quantum ground state. Notably, the mathematical theory of this Bose-Einstein condensation is not limited to quantum theory but was also successfully applied to condensation in random networks. In our work, we follow the opposite path. We apply the theory of evolutionary dynamics to describe condensation in a bosonic system that is driven and dissipative. It was shown that the system may condense into multiple quantum states, but into which states has remained elusive. We find that vanishing of relative entropy production determines these states. We illuminate the physical principles underlying the condensation and show that the condensates do not need to be static but may engage in ``evolutionary games'' with exchange of particles. On the mathematical level, the condensation is described by coupled birth-death processes. The generic structure of these processes implies that our results also apply to condensation in other systems, ranging from population biology to chemical kinetics.

  13. 3-D Modelling of Electromagnetic, Thermal, Mechanical and Metallurgical Couplings in Metal Forming Processes

    SciTech Connect

    Chenot, Jean-Loup; Bay, Francois

    2007-04-07

    The different stages of metal forming processes often involve - beyond the mechanical deformations processes - other physical coupled problems, such as heat transfer, electromagnetism or metallurgy. The purpose of this paper is to focus on problems involving electromagnetic couplings. After a brief recall on electromagnetic modeling, we shall then focus on induction heating processes and present some results regarding heat transfer, as well as mechanical couplings. A case showing coupling for metallurgic microstructure evolution will conclude this paper.

  14. DRIFT-SCALE COUPLED PROCESSES (DST AND TH SEEPAGE) MODELS

    SciTech Connect

    J.T. Birkholzer; S. Mukhopadhyay

    2005-01-13

    The purpose of this report is to document drift-scale modeling work performed to evaluate the thermal-hydrological (TH) behavior in Yucca Mountain fractured rock close to waste emplacement drifts. The heat generated by the decay of radioactive waste results in rock temperatures elevated from ambient for thousands of years after emplacement. Depending on the thermal load, these temperatures are high enough to cause boiling conditions in the rock, giving rise to water redistribution and altered flow paths. The predictive simulations described in this report are intended to investigate fluid flow in the vicinity of an emplacement drift for a range of thermal loads. Understanding the TH coupled processes is important for the performance of the repository because the thermally driven water saturation changes affect the potential seepage of water into waste emplacement drifts. Seepage of water is important because if enough water gets into the emplacement drifts and comes into contact with any exposed radionuclides, it may then be possible for the radionuclides to be transported out of the drifts and to the groundwater below the drifts. For above-boiling rock temperatures, vaporization of percolating water in the fractured rock overlying the repository can provide an important barrier capability that greatly reduces (and possibly eliminates) the potential of water seeping into the emplacement drifts. In addition to this thermal process, water is inhibited from entering the drift opening by capillary forces, which occur under both ambient and thermal conditions (capillary barrier). The combined barrier capability of vaporization processes and capillary forces in the near-field rock during the thermal period of the repository is analyzed and discussed in this report.

  15. Drift-Scale Coupled Processes (DST and TH Seepage) Models

    SciTech Connect

    J. Birkholzer; S. Mukhopadhyay

    2004-09-29

    The purpose of this report is to document drift-scale modeling work performed to evaluate the thermal-hydrological (TH) behavior in Yucca Mountain fractured rock close to waste emplacement drifts. The heat generated by the decay of radioactive waste results in rock temperatures elevated from ambient for thousands of years after emplacement. Depending on the thermal load, these temperatures are high enough to cause boiling conditions in the rock, giving rise to water redistribution and altered flow paths. The predictive simulations described in this report are intended to investigate fluid flow in the vicinity of an emplacement drift for a range of thermal loads. Understanding the TH coupled processes is important for the performance of the repository because the thermally driven water saturation changes affect the potential seepage of water into waste emplacement drifts. Seepage of water is important because if enough water gets into the emplacement drifts and comes into contact with any exposed radionuclides, it may then be possible for the radionuclides to be transported out of the drifts and to the groundwater below the drifts. For above-boiling rock temperatures, vaporization of percolating water in the fractured rock overlying the repository can provide an important barrier capability that greatly reduces (and possibly eliminates) the potential of water seeping into the emplacement drifts. In addition to this thermal process, water is inhibited from entering the drift opening by capillary forces, which occur under both ambient and thermal conditions (capillary barrier). The combined barrier capability of vaporization processes and capillary forces in the near-field rock during the thermal period of the repository is analyzed and discussed in this report.

  16. Mapping pan-Arctic methane emissions at high spatial resolution using an adjoint atmospheric transport and inversion method and process-based wetland and lake biogeochemical models

    NASA Astrophysics Data System (ADS)

    Tan, Z.; Zhuang, Q.; Henze, D. K.; Frankenberg, C.; Dlugokencky, E.; Sweeney, C.; Turner, A. J.

    2015-11-01

    Understanding methane emissions from the Arctic, a fast warming carbon reservoir, is important for projecting changes in the global methane cycle under future climate scenarios. Here we optimize Arctic methane emissions with a nested-grid high-resolution inverse model by assimilating both high-precision surface measurements and column-average SCIAMACHY satellite retrievals of methane mole fraction. For the first time, methane emissions from lakes are integrated into an atmospheric transport and inversion estimate, together with prior wetland emissions estimated by six different biogeochemical models. We find that, the global methane emissions during July 2004-June 2005 ranged from 496.4 to 511.5 Tg yr-1, with wetland methane emissions ranging from 130.0 to 203.3 Tg yr-1. The Arctic methane emissions during July 2004-June 2005 were in the range of 14.6-30.4 Tg yr-1, with wetland and lake emissions ranging from 8.8 to 20.4 Tg yr-1 and from 5.4 to 7.9 Tg yr-1 respectively. Canadian and Siberian lakes contributed most of the estimated lake emissions. Due to insufficient measurements in the region, Arctic methane emissions are less constrained in northern Russia than in Alaska, northern Canada and Scandinavia. Comparison of different inversions indicates that the distribution of global and Arctic methane emissions is sensitive to prior wetland emissions. Evaluation with independent datasets shows that the global and Arctic inversions improve estimates of methane mixing ratios in boundary layer and free troposphere. The high-resolution inversions provide more details about the spatial distribution of methane emissions in the Arctic.

  17. Geophysical Monitoring of Hydrological and Biogeochemical Transformations associated with Cr(VI) Bioremediation

    SciTech Connect

    Hubbard, Susan; Williams, Kenneth H.; Conrad, Mark E.; Faybishenko, Boris; Peterson, John; Chen, Jinsong; Long, Philip E.; Hazen, Terry C.

    2008-05-15

    Understanding how hydrological and biogeochemical properties change over space and time in response to remedial treatments is hindered by our ability to monitor these processes with sufficient resolution and over field relevant scales. Here, we explored the use of geophysical approaches for monitoring the spatiotemporal distribution of hydrological and biogeochemical transformations associated with a Cr(VI)bioremediation experiment performed at Hanford, WA. We first integrated hydrological wellbore and geophysical tomographic datasets to estimate hydrological zonation at the study site. Using results from laboratory biogeophysical experiments and constraints provided by field geochemical datasets, we then interpreted time-lapse seismic and radar tomographic datasets, collected during thirteen acquisition campaigns over a three year experimental period, in terms of hydrological and biogeochemical transformations. The geophysical monitoring datasets were used to infer: the spatial distribution of injected electron donor; the evolution of gas bubbles; variations in total dissolved solids (nitrate and sulfate) as a function of pumping activity; the formation of precipitates and dissolution of calcites; and concomitant changes in porosity. Although qualitative in nature, the integrated interpretation illustrates how geophysical techniques have the potential to provide a wealth of information about coupled hydrobiogeochemical responses to remedial treatments in high spatial resolution and in a minimally invasive manner. Particularly novel aspects of our study include the use of multiple lines of evidence to constrain the interpretation of a long-term, field-scale geophysical monitoring dataset and the interpretation of the transformations as a function of hydrological heterogeneity and pumping activity.

  18. Terrestrial ecosystems and the global biogeochemical silica cycle

    NASA Astrophysics Data System (ADS)

    Conley, Daniel J.

    2002-12-01

    Most research on the global Si cycle has focused nearly exclusively on weathering or the oceanic Si cycle and has not explored the complexity of the terrestrial biogeochemical cycle. The global biogeochemical Si cycle is of great interest because of its impact on global CO2 concentrations through the combined processes of weathering of silicate minerals and transfer of CO2 from the atmosphere to the lithosphere. A sizable pool of Si is contained as accumulations of amorphous silica, or biogenic silica (BSi), in living tissues of growing plants, known as phytoliths, and, after decomposition of organic material, as remains in the soil. The annual fixation of phytolith silica ranges from 60-200 Tmol yr-1 and rivals that fixed in the oceanic biogeochemical cycle (240 Tmol yr-1). Internal recycling of the phytolith pool is intense with riverine fluxes of dissolved silicate to the oceans buffered by the terrestrial biogeochemical Si cycle, challenging the ability of weathering models to predict rates of weathering and consequently, changes in global climate. Consideration must be given to the influence of the terrestrial BSi pool on variations in the global biogeochemical Si cycle over geologic time and the influence man has had on modifying both the terrestrial and aquatic biogeochemical cycles.

  19. Feedback control of chlorine inductively coupled plasma etch processing

    SciTech Connect

    Lin Chaung; Leou, K.-C.; Shiao, K.-M.

    2005-03-01

    Feedback control has been applied to poly-Si etch processing using a chlorine inductively coupled plasma. Since the positive ion flux and ion energy incident upon the wafer surface are the key factors that influence the etch rate, the ion current and the root mean square (rms) rf voltage on the wafer stage, which are measured using an impedance meter connected to the wafer stage, are adopted as the controlled variables to enhance etch rate. The actuators are two 13.56 MHz rf power generators, which adjust ion density and ion energy, respectively. The results of closed-loop control show that the advantages of feedback control can be achieved. For example, with feedback control, etch rate variation under the transient chamber wall condition is reduced roughly by a factor of 2 as compared to the open-loop case. In addition, the capability of the disturbance rejection was also investigated. For a gas pressure variation of 20%, the largest etch rate variation is about 2.4% with closed-loop control as compared with as large as about 6% variation using open-loop control. Also the effect of ion current and rms rf voltage on etch rate was studied using 2{sup 2} factorial design whose results were used to derive a model equation. The obtained formula was used to adjust the set point of ion current and rf voltage so that the desired etch rate was obtained.

  20. Coupled fragmentation and silicification processes in fault zones.

    NASA Astrophysics Data System (ADS)

    Ord, Alison; Seybold, Lina; Hobbs, Bruce; Kruhl, Jörn; Heuss, Soraya; Blenkinsop, Tom

    2015-04-01

    We explore some possible interactions of mechanical and chemical processes which may have led to the patterns of fragmentation and quartz precipitation observed at the Fountain Range Fault at Fountain Springs. Seybold et al. (this session) describe features which indicate a multiphase fragmentation and quartz precipitation history of the Fountain Range Fault (Mt Isa Inlier, Australia). They infer that intense fragmentation, together with fluid infiltration and quartz crystallization in pore space, led to fine-grained cataclastic and silicified masses, followed by numerous events of quartz-vein formation and, again, cataclasis probably leading to flow of particle-fluid suspensions. They proposed the macro- and microstructures to reflect the interaction of repeated processes of fragmentation, fluid flux, quartz precipitation and cataclastic flow during the long-lasting history of the fault zone. We compare and contrast the patterns arising from the modelled interactions with the observed patterns in a quantitative manner through the application of wavelets. There are all sorts of wavelets, each useful for different patterns. The point is that all of them are localised wave packets of some kind the wavelet is scanned across the image with different magnifications and we look to see how closely the wavelet matches the image at a particular scale. It is a "fabric microscope" that enables one to zoom into the details of any deformation fabric and extract information on the ways in which the geometry of every part of the fabric scales with size. This enables a scalogram to be constructed and from that the singularity spectrum with its many measures of features of the geometry. The wavelet analysis enables us to compare in a quantitative manner the results of numerical modeling based on a coupled damage quartz precipitation model with field observations.

  1. Carbon sources and biogeochemical processes in Monticchio maar lakes, Mt Vulture volcano (southern Italy): New geochemical constrains of active degassing of mantle derived fluids

    NASA Astrophysics Data System (ADS)

    Caracausi, A.; Nuccio, P. M.; Favara, R.; Grassa, F.

    2012-04-01

    difference in methane contents between shallower (< 14m) and deep water, being CH4 concentrations higher in the stagnant volume of waters. Nonetheless the large gradient in methane contents (CH4 increases with depth) observed in the deep waters both C and H isotopes of methane remain constant with depth. In contrast, in the shallow waters the changes in dissolved CH4 contents are accompanied with modifications in the isotope signature of methane thus indicating that oxidation processes seem to be relevant only at a depth lower than 14 m. It is striking that in this lake, CO2-reduction is thought to be the main methanogenesis pathway for methane dissolved in the waters, while in the sediments methane is mainly produced by acetate fermentation. As methanogenesis processes leads to both bacterial consumption and production of CO2, the quantification of these becomes fundamental in inferring the nature and the quantitative releasing of carbon dioxide of magmatic origin and estimation of its isotopic signature. The re-calculated isotopic compositions (-7 ‰< ^13C<-1 ‰) fall within typically magmatic values, furthermore they fall also in the range of Mt. Vulture carbonatites. The computed values of C/3He (2-8 x 109) are in the range of sub-continental mantle. As the Monticchio lakes can be view as natural geological reservoirs subjected to injection of bio and a-biogenic gases, this study shows that amounts and isotopic signature of methane coupled to total dissolved inorganic carbon is a sensitive tool to evaluate the amount of mantle-derived fluids carried into groundwater feeding the lakes.

  2. Biogeochemical drivers of phosphatase activity in salt marsh sediments

    NASA Astrophysics Data System (ADS)

    Freitas, Joana; Duarte, Bernardo; Caçador, Isabel

    2014-10-01

    Although nitrogen has become a major concern for wetlands scientists dealing with eutrophication problems, phosphorous represents another key element, and consequently its biogeochemical cycling has a crucial role in eutrophication processes. Microbial communities are a central component in trophic dynamics and biogeochemical processes on coastal systems, since most of the processes in sediments are microbial-mediated due to enzymatic action, including the mineralization of organic phosphorus carried out by acid phosphatase activity. In the present work, the authors investigate the biogeochemical sediment drivers that control phosphatase activities. Authors also aim to assess biogeochemical factors' influence on the enzyme-mediated phosphorous cycling processes in salt marshes. Plant rhizosediments and bare sediments were collected and biogeochemical features, including phosphatase activities, inorganic and organic phosphorus contents, humic acids content and pH, were assessed. Acid phosphatase was found to give the highest contribution for total phosphatase activity among the three pH-isoforms present in salt marsh sediments, favored by acid pH in colonized sediments. Humic acids also appear to have an important role inhibiting phosphatase activity. A clear relation of phosphatase activity and inorganic phosphorous was also found. The data presented reinforces the role of phosphatase in phosphorous cycling.

  3. Using Halogens (Cl, Br, F, I) and Stable Isotopes of Water (δ18O, δ2H) to Trace Hydrological and Biogeochemical Processes in Prairie Wetlands

    NASA Astrophysics Data System (ADS)

    Levy, Z. F.; Lu, Z.; Mills, C. T.; Goldhaber, M. B.; Rosenberry, D. O.; Mushet, D.; Siegel, D. I.; Fiorentino, A. J., II; Gade, M.; Spradlin, J.

    2014-12-01

    Prairie pothole wetlands are ubiquitous features of the Great Plains of North America, and important habitat for amphibians and migratory birds. The salinity of proximal wetlands varies highly due to groundwater-glacial till interactions, which influence wetland biota and associated ecosystem functions. Here we use halogens and stable isotopes of water to fingerprint hydrological and biogeochemical controls on salt cycling in a prairie wetland complex. We surveyed surface, well, and pore waters from a groundwater recharge wetland (T8) and more saline closed (P1) and open (P8) basin discharge wetlands in the Cottonwood Lake Study Area (ND) in August/October 2013 and May 2014. Halogen concentrations varied over a broad range throughout the study area (Cl = 2.2 to 170 mg/L, Br = 13 to 2000 μg/L, F = < 30 (MDL) to 740 μg/L, I = 1 to 538 μg/L). The Cl/Br molar ratios were higher (171 to 574) at the recharge wetland, indicating meteoric sources, and had a tighter and lower range (33 to 320) at the down-gradient sites. The Cl/I molar ratios of waters throughout the site had a wide range (32 to 26,000). Lowest values occurred at the upgradient shore of P1 (32 to 43) due to low Cl concentrations and the center of P1 (196 to 213) where pore water of weathered till underlying 1.2 m of organic-rich sediment and silty clay soil is enriched in I to ~500 µg/L. Stable isotopes of water showed that evaporation-enriched pond water (δ18O = -9.5 to -2.71 ‰) mixes with shallow groundwater in the top 0.6 m of fringing wetland soils and 1.2 m of the substrate in the center of P1. Our results suggest endogenous sources for Br and I within the prairie landscape that may be controlled by biological mechanisms or weathering of shale from glacial till.

  4. Effects of soil data and simulation unit resolution on quantifying changes of soil organic carbon at regional scale with a biogeochemical process model.

    PubMed

    Zhang, Liming; Yu, Dongsheng; Shi, Xuezheng; Xu, Shengxiang; Xing, Shihe; Zhao, Yongcong

    2014-01-01

    Soil organic carbon (SOC) models were often applied to regions with high heterogeneity, but limited spatially differentiated soil information and simulation unit resolution. This study, carried out in the Tai-Lake region of China, defined the uncertainty derived from application of the DeNitrification-DeComposition (DNDC) biogeochemical model in an area with heterogeneous soil properties and different simulation units. Three different resolution soil attribute databases, a polygonal capture of mapping units at 1:50,000 (P5), a county-based database of 1:50,000 (C5) and county-based database of 1:14,000,000 (C14), were used as inputs for regional DNDC simulation. The P5 and C5 databases were combined with the 1:50,000 digital soil map, which is the most detailed soil database for the Tai-Lake region. The C14 database was combined with 1:14,000,000 digital soil map, which is a coarse database and is often used for modeling at a national or regional scale in China. The soil polygons of P5 database and county boundaries of C5 and C14 databases were used as basic simulation units. Results project that from 1982 to 2000, total SOC change in the top layer (0-30 cm) of the 2.3 M ha of paddy soil in the Tai-Lake region was +1.48 Tg C, -3.99 Tg C and -15.38 Tg C based on P5, C5 and C14 databases, respectively. With the total SOC change as modeled with P5 inputs as the baseline, which is the advantages of using detailed, polygon-based soil dataset, the relative deviation of C5 and C14 were 368% and 1126%, respectively. The comparison illustrates that DNDC simulation is strongly influenced by choice of fundamental geographic resolution as well as input soil attribute detail. The results also indicate that improving the framework of DNDC is essential in creating accurate models of the soil carbon cycle.

  5. Climate Variability and Change in a Eutrophic Great Lakes Freshwater Embayment: Shifting Hydrodynamics and the Potential for Indirect Impacts on Biogeochemical Processes, Carbon Cycling and Hypoxia

    NASA Astrophysics Data System (ADS)

    Klump, J. V.; Waples, J. T.

    2008-12-01

    Future changes in the climatic regime of the Great Lakes region have the potential to induce a variety of both direct (e.g. thermal) and indirect (e.g. biogeochemical) alterations in ecosystem function. In the case of the later, we have identified a statistically significant shift in wind direction of the average wind field over the Great Lakes basin that is consistent with a southward migration of the dominant summer storm track. In Green Bay (NW Lake Michigan), we have shown that the new wind field has most likely resulted in periods of decreased thermal stratification and an overall decrease in water mass exchange with Lake Michigan. In subsequent studies, aimed at determining the impact of these shifts in the physical climate regime, time series measurements of currents, turbidity, dissolved oxygen, and the Be-7 activity of particulates in bottom sediments, sediment traps, and suspended particulates have been made over a 3 year period. A tracer of short term particle dynamics, Be-7 (half life 53 d) is useful in estimating particle residence times in the water column, along with episodic sediment deposition and erosion rates, and the average number of deposition/erosion cycles a particle experiences prior to permanent burial in the sediments. Be-7 derived estimates of the age of particulate organic carbon cycling between surface sediments and the overlying waters are on the order of months, and are dependent upon resuspension frequency. Remineralization of organic carbon within this actively resuspended pool of material results in estimated decomposition rates for POC ranging 0.08 to 0.04% per day, a rate intermediate between the rapid remineralization of fresh algal material and post-depositional diagenesis. Comparisons between 1989-90 and 2004-06 show a decrease in resuspension frequency, possibly in response to shifts in regional climatic scale dynamics. This appears to result in an increase in the efficiency of trapping of organic matter in the bay and a

  6. Effects of Soil Data and Simulation Unit Resolution on Quantifying Changes of Soil Organic Carbon at Regional Scale with a Biogeochemical Process Model

    PubMed Central

    Zhang, Liming; Yu, Dongsheng; Shi, Xuezheng; Xu, Shengxiang; Xing, Shihe; Zhao, Yongcong

    2014-01-01

    Soil organic carbon (SOC) models were often applied to regions with high heterogeneity, but limited spatially differentiated soil information and simulation unit resolution. This study, carried out in the Tai-Lake region of China, defined the uncertainty derived from application of the DeNitrification-DeComposition (DNDC) biogeochemical model in an area with heterogeneous soil properties and different simulation units. Three different resolution soil attribute databases, a polygonal capture of mapping units at 1∶50,000 (P5), a county-based database of 1∶50,000 (C5) and county-based database of 1∶14,000,000 (C14), were used as inputs for regional DNDC simulation. The P5 and C5 databases were combined with the 1∶50,000 digital soil map, which is the most detailed soil database for the Tai-Lake region. The C14 database was combined with 1∶14,000,000 digital soil map, which is a coarse database and is often used for modeling at a national or regional scale in China. The soil polygons of P5 database and county boundaries of C5 and C14 databases were used as basic simulation units. Results project that from 1982 to 2000, total SOC change in the top layer (0–30 cm) of the 2.3 M ha of paddy soil in the Tai-Lake region was +1.48 Tg C, −3.99 Tg C and −15.38 Tg C based on P5, C5 and C14 databases, respectively. With the total SOC change as modeled with P5 inputs as the baseline, which is the advantages of using detailed, polygon-based soil dataset, the relative deviation of C5 and C14 were 368% and 1126%, respectively. The comparison illustrates that DNDC simulation is strongly influenced by choice of fundamental geographic resolution as well as input soil attribute detail. The results also indicate that improving the framework of DNDC is essential in creating accurate models of the soil carbon cycle. PMID:24523922

  7. Quantification of Terrestrial Ecosystem Carbon Dynamics in the Conterminous United States Combining a Process-Based Biogeochemical Model and MODIS and AmeriFlux data

    SciTech Connect

    Chen, Min; Zhuang, Qianlai; Cook, David R.; Coulter, Richard L.; Pekour, Mikhail S.; Scott, Russell L.; Munger, J. W.; Bible, Ken

    2011-09-21

    Satellite remote sensing provides continuous temporal and spatial information of terrestrial 24 ecosystems. Using these remote sensing data and eddy flux measurements and biogeochemical 25 models, such as the Terrestrial Ecosystem Model (TEM), should provide a more adequate 26 quantification of carbon dynamics of terrestrial ecosystems. Here we use Moderate Resolution 27 Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI), Land Surface Water Index 28 (LSWI) and carbon flux data of AmeriFlux to conduct such a study. We first modify the gross primary 29 production (GPP) modeling in TEM by incorporating EVI and LSWI to account for the effects of the 30 changes of canopy photosynthetic capacity, phenology and water stress. Second, we parameterize and 31 verify the new version of TEM with eddy flux data. We then apply the model to the conterminous 32 United States over the period 2000-2005 at a 0.05o ×0.05o spatial resolution. We find that the new 33 version of TEM generally captured the expected temporal and spatial patterns of regional carbon 34 dynamics. We estimate that regional GPP is between 7.02 and 7.78 Pg C yr-1 and net primary 35 production (NPP) ranges from 3.81 to 4.38 Pg C yr-1 and net ecosystem production (NEP) varies 36 within 0.08-0.73 Pg C yr-1 over the period 2000-2005 for the conterminous United States. The 37 uncertainty due to parameterization is 0.34, 0.65 and 0.18 Pg C yr-1 for the regional estimates of GPP, 38 NPP and NEP, respectively. The effects of extreme climate and disturbances such as severe drought in 39 2002 and destructive Hurricane Katrina in 2005 were captured by the model. Our study provides a 40 new independent and more adequate measure of carbon fluxes for the conterminous United States, 41 which will benefit studies of carbon-climate feedback and facilitate policy-making of carbon 42 management and climate.

  8. Quantification of terrestrial ecosystem carbon dynamics in the conterminous United States combining a process-based biogeochemical model and MODIS and AmeriFlux data

    SciTech Connect

    Chen, Min; Zhuang, Qianlai; Cook, D.; Coulter, Richard L.; Pekour, Mikhail S.; Scott, Russell L.; Munger, J. W.; Bible, Ken

    2011-08-31

    Satellite remote sensing provides continuous temporal and spatial information of terrestrial ecosystems. Using these remote sensing data and eddy flux measurements and biogeochemical models, such as the Terrestrial Ecosystem Model (TEM), should provide a more adequate quantification of carbon dynamics of terrestrial ecosystems. Here we use Moderate Resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI), Land Surface Water Index (LSWI) and carbon flux data of AmeriFlux to conduct such a study. We first modify the gross primary production (GPP) modeling in TEM by incorporating EVI and LSWI to account for the effects of the changes of canopy photosynthetic capacity, phenology and water stress. Second, we parameterize and verify the new version of TEM with eddy flux data. We then apply the model to the conterminous United States over the period 2000-2005 at a 0.05-0.05 spatial resolution. We find that the new version of TEM made improvement over the previous version and generally captured the expected temporal and spatial patterns of regional carbon dynamics. We estimate that regional GPP is between 7.02 and 7.78 PgC yr{sup -1} and net primary production (NPP) ranges from 3.81 to 4.38 Pg Cyr{sup -1} and net ecosystem production (NEP) varies within 0.08- 0.73 PgC yr{sup -1} over the period 2000-2005 for the conterminous United States. The uncertainty due to parameterization is 0.34, 0.65 and 0.18 PgC yr{sup -1} for the regional estimates of GPP, NPP and NEP, respectively. The effects of extreme climate and disturbances such as severe drought in 2002 and destructive Hurricane Katrina in 2005 were captured by the model. Our study provides a new independent and more adequate measure of carbon fluxes for the conterminous United States, which will benefit studies of carbon-climate feedback and facilitate policy-making of carbon management and climate.

  9. Astronomical Forcing of Salt Marsh Biogeochemical Cascades

    NASA Astrophysics Data System (ADS)

    Morris, J. T.; Sundberg, K.

    2008-12-01

    Astronomically forced changes in the hydroperiod of a salt marsh affect the rate of marsh primary production leading to a biogeochemical cascade. For example, salt marsh primary production and biogeochemical cycles in coastal salt marshes are sensitive to the 18.6-year lunar nodal cycle, which alters the tidal amplitude by about 5 cm. For marshes that are perched high in the tidal frame, a relatively small increase in tidal amplitude and flooding lowers sediment salinity and stimulates primary production. Porewater sulfide concentrations are positively correlated with tidal amplitude and vary on the same cycle as primary production. Soluble reactive phosphate and ammonium concentrations in pore water also vary on this 18.6- year cycle. Phosphate likely responds to variation in the reaction of sulfide with iron-phosphate compounds, while the production of ammonium in sediments is coupled to the activity of diazotrophs that are carbon- limited and, therefore, are regulated by primary productivity. Ammonium also would accumulate when sulfides block nitrification. These dependencies work as a positive feedback between primary production and nutrient supply and are predictive of the near-term effects of sea-level rise.

  10. A cost-efficient biogeochemical model for estuaries: a case-study of a funnel-shaped system

    NASA Astrophysics Data System (ADS)

    Volta, Chiara; Arndt, Sandra; Regnier, Pierre

    2013-04-01

    The hydrodynamics exerts an important influence on the biogeochemical functioning of estuarine systems. Comparative studies have long recognized this tight coupling and, for instance, have attempted to correlate key estuarine biogeochemical processes to simple hydrodynamic properties, such as the residence time or the tidal forcing. Yet, these correlations fail to resolve the estuarine spatio-temporal variability and do not provide powerful means to disentangle the complex interplay of multiple reaction and transport processes. In this context, reaction-transport models (RTMs) are useful tools to resolve the variability inherent to the estuarine environment. They ideally complement field observations, because their integrative power provides the required extrapolation means for a system-scale analysis over the entire spectrum of changing forcing conditions, including the long-term response to land-use and climate changes. However, RTM simulations are associated with high computational costs, especially when the biogeochemical dynamics are to be resolved on a regional or global scale. Furthermore, specific data requirements, such as boundary conditions or bathymetric and geometric information may limit their applicability. Here, a generic one-dimensional RTM approach which relies on idealized geometries to support the estuarine physics is used to quantify the biogeochemical dynamics. The model is cost-efficient and requires only a limited number of readily available input data. The approach is applied to a case-study of a funnel-shaped estuary (The Scheldt, BE/NL) and is tested by comparing integrative measures of the estuarine biogeochemical functioning (e.g. Net Ecosystem Metabolism, integrated CO2 fluxes) with those derived from observations (Frankignoulle et al., 1996, 1998) and highly-resolved model simulations (Vanderborght et al., 2002; Arndt et al., 2009). The method provides a robust quantitative tool to carry sensitivity and uncertainty analyses and to

  11. A biogeochemical cycle for aluminium?

    PubMed

    Exley, Christopher

    2003-09-15

    The elaboration of biogeochemical cycles for elements which are known to be essential for life has enabled a broad appreciation of the homeostatic mechanisms which underlie element essentiality. In particular they can be used effectively to identify any part played by human activities in element cycling and to predict how such activities might impact upon the lithospheric and biospheric availability of an element in the future. The same criteria were the driving force behind the construction of a biogeochemical cycle for aluminium, a non-essential element which is a known ecotoxicant and a suspected health risk in humans. The purpose of this exercise was to examine the concept of a biogeochemical cycle for aluminium and not to review the biogeochemistry of this element. The cycle as presented is rudimentary and qualitative though, even in this nascent form, it is informative and predictive and, for these reasons alone, it is deserving of future quantification. A fully fledged biogeochemical cycle for aluminium should explain the biospheric abundance of this element and whether we should expect its (continued) active involvement in biochemical evolution.

  12. Linking the Modern and Recent Record of Cabo Frio Upwelling with Local Climate and Biogeochemical Processes in Hypersaline Coastal Lagoons, Região dos Lagos, Rio de Janeiro, Brazil

    NASA Astrophysics Data System (ADS)

    McKenzie, J. A.; Nascimento, G. S.; Albuquerque, A. L.; Belem, A. L.; Carreira, R.; Eglinton, T. I.; Vasconcelos, C.

    2015-12-01

    A unique marine and lagoonal system along the coast east of Rio de Janeiro is being investigated to understand the impact of climatic variability on the South Atlantic carbon cycle and biomineralisation processes involved in carbonate precipitation in the hypersaline coastal lagoons. The region is dominated by a semi-arid microclimate attributed to the local coastal upwelling phenomenon near Cabo Frio. The intensity of the upwelling affects the hydrology of the annual water and biogeochemical cycles in the lagoons, as well as biogeochemical signals of environmental change recorded in both onshore and offshore sediments. Preliminary results of δ18O and δD values of water samples collected monthly in Lagoa Vermelha and Brejo do Espinho from 2011 to 2014 show lower values for waters corresponding to the wet season, reflecting increased input of meteoric water. The higher values for waters collected during the dry season reflect the greater amount of evaporation with increased seasonal aridity. Radiocarbon dating of Holocene marine and lagoonal cores indicates that Mg-carbonate precipitation in the lagoons is associated with high evaporation. Modern field observations for the last 3 years suggest that the amount of carbonate precipitation is correlated with evaporitic conditions associated with the upwelling phenomenon. A calibration study of hydrogen isotopic fractionation in the modern lagoons is underway to define a relationship between δDlipid of suspended particles and δDwater of associated water. This isotopic relationship will be applied to material obtained in cores from the lagoons. Offshore cores will be studied using well-tested paleotemperature proxies to evaluate the intensity of the upwelling during the Holocene. In summary, linking the coastal upwelling with the lagoonal hydrology has the potential to furnish important insights about the relationship between the local climate and paleoceanographic circulation associated with the regional carbon cycle.

  13. Hydrologic and biogeochemical functioning of intensively managed catchments: A synthesis of top-down analyses

    NASA Astrophysics Data System (ADS)

    Basu, Nandita B.; Thompson, Sally E.; Rao, P. Suresh C.

    2011-10-01

    This paper synthesizes a 3-year collaborative effort to characterize the biogeochemical and hydrological features of intensively managed agricultural catchments by combining data analysis, modeling, and preliminary hypothesis testing. The specific focus was on the Midwestern region of the United States. The results suggest that: (1) water management, specifically the homogenization of evapotranspiration losses driven by mono-cultural vegetation cover, and the homogenization of runoff generation driven by artificial drainage, has created engineered, predictable hydrologic systems; (2) nutrient and pesticide management, specifically their regular applications have created two kinds of biogeochemical export regimes: chemostatic (low variability in concentration as exhibited by nitrate) and episodic (high variability in concentration as exhibited by pesticides); (3) coupled mass-balance models for water and solutes reproduce these two regimes as a function of chemical rate constants. Phosphorus transport regimes were found to be episodic at smaller spatial scales, but chemostatic at larger scales. Chemostatic response dominates in transport-limited catchments that have internal sources of the solute to buffer the periodicity in episodic inputs, while episodic response dominates in source-limited catchments. The shift from episodic nitrate export in pristine catchments to chemostatic regimes in managed watersheds was attributed to legacy stores of nitrogen (built from continued fertilizer applications) that buffer interannual variations in biogeochemical processing. Fast degradation kinetics of pesticides prevents the build-up of legacy sources, and leads to episodic export. Analytical expressions were derived for the probability density functions of solute delivery ratio as a function of the stochastics of rainfall-runoff events and biogeochemical controls.

  14. Client Discourses on the Process of Seeking Same-Sex Couple Counselling

    ERIC Educational Resources Information Center

    Grove, Jan; Peel, Elizabeth; Owen-Pugh, Valerie

    2013-01-01

    How same-sex couples manage the process of seeking help for their relationships is an under-researched area. Twelve semi-structured interviews were conducted with 16 people who had engaged in same-sex couple counselling, and were analysed using discourse analysis. The ways in which the couples positioned themselves as part of a "minority…

  15. Nutrient dynamics, transfer and retention along the aquatic continuum from land to ocean: towards integration of ecological and biogeochemical models

    NASA Astrophysics Data System (ADS)

    Bouwman, A. F.; Bierkens, M. F. P.; Griffioen, J.; Hefting, M. M.; Middelburg, J. J.; Middelkoop, H.; Slomp, C. P.

    2013-01-01

    In river basins, soils, groundwater, riparian zones and floodplains, streams, rivers, lakes and reservoirs act as successive filters in which the hydrology, ecology and biogeochemical processing are strongly coupled and together act to retain a significant fraction of the nutrients transported. This paper compares existing river ecology concepts with current approaches to describe river biogeochemistry, and assesses the value of these concepts and approaches for understanding the impacts of interacting global change disturbances on river biogeochemistry. Through merging perspectives, concepts, and modeling techniques, we propose integrated model approaches that encompass both aquatic and terrestrial components in heterogeneous landscapes. In this model framework, existing ecological and biogeochemical concepts are extended with a balanced approach for assessing nutrient and sediment delivery, on the one hand, and nutrient in-stream retention on the other hand.

  16. River restoration: morphological, hydrological, biogeochemical and ecological changes and challenges

    NASA Astrophysics Data System (ADS)

    Schirmer, M.; Luster, J.; Linde, N.; Perona, P.; Mitchell, E. A. D.; Barry, D. A.; Cirpka, O. A.; Schneider, P.; Vogt, T.; Durisch-Kaiser, E.

    2013-08-01

    River restoration is essential as a means to enhance river dynamics, environmental heterogeneity and biodiversity. The underlying processes governing the dynamic changes need to be understood thoroughly to ensure that restoration projects meet their goals. In particular, we need to understand quantitatively how hydromorphological variability relates to ecosystem functioning and services, biodiversity and (ground)water quality in restored river corridors. Here, we provide a short overview on the literature and present a study of a restored river corridor in Switzerland combining physical, chemical, and biological observations with modeling. The results show complex spatial patterns of bank infiltration, habitat-type, biotic communities and biogeochemical processes. In particular, we found an increase in taxonomic and functional diversity for earthworms, testate amoebae and bacteria in the restored part of the river. This complexity is driven by river hydrology and morphodynamics, which are in turn actively coupled to riparian vegetation processes. Given this complexity and the multiple constraints on the uses and management of floodplains, a multi-disciplinary approach is needed to monitor the success of restoration measures and to make recommendations for future restoration projects.

  17. Biogeochemical Cycles of Carbon and Sulfur

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; DeVincenzi, D. (Technical Monitor)

    2002-01-01

    The elements carbon (C) and sulfur (S) interact with each other across a network of elemental reservoirs that are interconnected by an array of physical, chemical and biological processes. These networks are termed the biogeochemical C and S cycles. The compounds of C are highly important, not only as organic matter, but also as atmospheric greenhouse gases, pH buffers in seawater, oxidation-reduction buffers virtually everywhere, and key magmatic constituents affecting plutonism and volcanism. The element S assumes important roles as an oxidation-reduction partner with C and Fe in biological systems, as a key constituent in magmas and volcanic gases, and as a major influence upon pH in certain environments. This presentation describes the modern biogeochemical C and S cycles. Measurements are described whereby stable isotopes can help to infer the nature and quantitative significance of biological and geological processes involved in the C and S cycles. This lecture also summarizes the geological and climatologic aspects of the ancient C and S cycles, as well as the planetary and extraterrestrial processes that influenced their evolution over millions to billions of years.

  18. Factors Influencing Phosphorous Cycling in Biogeochemical 'Hot Spots'

    NASA Astrophysics Data System (ADS)

    Saia, S. M.; Walter, M. T.; Buda, A. R.; Carrick, H. J.; Regan, J. M.

    2015-12-01

    Anthropogenic alteration of the phosphorus (P) cycle has led to subsequent soil and water quality issues. For example, P build up in soils due to historic fertilizer application may become biologically available and exacerbate eutrophication and anoxia in nearby water bodies. In the humid Northeastern United States, storm runoff transports P and also stimulates biogeochemical processes, these locations are termed biogeochemical 'hot spots'. Many studies have looked at nitrogen and carbon cycling in biogeochemical hot spots but few have focused on P. We hypothesize the periodic wetting and drying of biogeochemical hot spots promotes a combination of abiotic and biotic processes that influence the mobility of P. To test this hypothesis, we took monthly soil samples (5 cm deep) from May to October in forest, pasture, and cropped land near Ithaca, NY. In-situ measurements taken with each sample included volumetric soil moisture and soil temperature. We also analyzed samples for 'runoff generated' phosphate, nitrate, and sulfate (from 0.01 M CaCl2 extraction), Fe(II), percent organic matter, pH, as well as oxalate extractable and total P, Al, and Fe. We used linear mixed effects models to test how runoff generated phosphate concentrations vary with soil moisture and whether other environmental factors strengthen/weaken this relationship. The knowledge gained from this study will improve our understanding of P cycling in biogeochemical hot spots and can be used to improve the effectiveness of agricultural management practices in the Northeastern United States.

  19. The impacts of climate change and human activities on biogeochemical cycles on the Qinghai-Tibetan Plateau.

    PubMed

    Chen, Huai; Zhu, Qiuan; Peng, Changhui; Wu, Ning; Wang, Yanfen; Fang, Xiuqing; Gao, Yongheng; Zhu, Dan; Yang, Gang; Tian, Jianqing; Kang, Xiaoming; Piao, Shilong; Ouyang, Hua; Xiang, Wenhua; Luo, Zhibin; Jiang, Hong; Song, Xingzhang; Zhang, Yao; Yu, Guirui; Zhao, Xinquan; Gong, Peng; Yao, Tandong; Wu, Jianghua

    2013-10-01

    With a pace of about twice the observed rate of global warming, the temperature on the Qinghai-Tibetan Plateau (Earth's 'third pole') has increased by 0.2 °C per decade over the past 50 years, which results in significant permafrost thawing and glacier retreat. Our review suggested that warming enhanced net primary production and soil respiration, decreased methane (CH(4)) emissions from wetlands and increased CH(4) consumption of meadows, but might increase CH(4) emissions from lakes. Warming-induced permafrost thawing and glaciers melting would also result in substantial emission of old carbon dioxide (CO(2)) and CH(4). Nitrous oxide (N(2)O) emission was not stimulated by warming itself, but might be slightly enhanced by wetting. However, there are many uncertainties in such biogeochemical cycles under climate change. Human activities (e.g. grazing, land cover changes) further modified the biogeochemical cycles and amplified such uncertainties on the plateau. If the projected warming and wetting continues, the future biogeochemical cycles will be more complicated. So facing research in this field is an ongoing challenge of integrating field observations with process-based ecosystem models to predict the impacts of future climate change and human activities at various temporal and spatial scales. To reduce the uncertainties and to improve the precision of the predictions of the impacts of climate change and human activities on biogeochemical cycles, efforts should focus on conducting more field observation studies, integrating data within improved models, and developing new knowledge about coupling among carbon, nitrogen, and phosphorus biogeochemical cycles as well as about the role of microbes in these cycles.

  20. Comparison of sequentially coupled and fully implicitly coupled numerical models of Thermal-Hydrological-Mechanical processes in Enhanced Geothermal Reservoirs

    NASA Astrophysics Data System (ADS)

    Kelkar, S.; Lewis, K. C.; Zyvoloski, G.; Rapaka, S.; Pawar, R. J.

    2011-12-01

    Energy extraction from geothermal reservoirs is strongly influenced by fracture characteristics. This fact applies to both hydrothermal as well as engineered reservoirs. The connectivity and accessible flow areas of fractures are highly dependent on stresses in the reservoir. Stress changes due to fluid injection and circulation can cause both desirable and undesirable effects. For example, desirable effects include enhancement of heat exchange area and lowering of flow impedance while undesirable effects include fluid short circuiting and eventual premature thermal breakthrough - the rock contracts and the fracture aperture increases locally causing preferential flow in a relatively small area. Hence the ability to accurately model the coupled thermal-hydrologic-mechanical (THM) processes including fracture-stress interactions in the presence of variations in temperature and fluid pressure is critical for effective reservoir management strategies. The locations of microseismic events can serve as indicators of the zones of enhanced permeability, thus providing vital information for verification of the coupled THM models. We describe a general purpose computational code, FEHM, developed for this purpose, that models coupled THM processes during multi-phase fluid flow and transport in fractured porous media. The code incorporates several models of fracture aperture and stress behavior combined with permeability relationships. Historically, coupled flow and mechanical processes have been modeled using different levels of coupling - i.e. sequential, iterative or fully implicit. We compare the predictions of the three methods on field scale examples of applications to geothermal systems.

  1. High ethylene to ethane processes for oxidative coupling

    DOEpatents

    Chafin, Richard B.; Warren, Barbara K.

    1991-01-01

    Oxidative coupling of lower alkane to higher hydrocarbon is conducted using catalyst comprising barium and/or strontium component and a metal oxide combustion promoter in the presence of vapor phase halogen component. High ethylene to ethane mole ratios in the product can be obtained over extended operating periods.

  2. High ethylene to ethane processes for oxidative coupling

    DOEpatents

    Chafin, R.B.; Warren, B.K.

    1991-12-17

    Oxidative coupling of lower alkane to higher hydrocarbon is conducted using a catalyst comprising barium and/or strontium component and a metal oxide combustion promoter in the presence of vapor phase halogen component. High ethylene to ethane mole ratios in the product can be obtained over extended operating periods.

  3. Global Change: A Biogeochemical Perspective

    NASA Technical Reports Server (NTRS)

    Mcelroy, M.

    1983-01-01

    A research program that is designed to enhance our understanding of the Earth as the support system for life is described. The program change, both natural and anthropogenic, that might affect the habitability of the planet on a time scale roughly equal to that of a human life is studied. On this time scale the atmosphere, biosphere, and upper ocean are treated as a single coupled system. The need for understanding the processes affecting the distribution of essential nutrients--carbon, nitrogen, phosphorous, sulfur, and water--within this coupled system is examined. The importance of subtle interactions among chemical, biological, and physical effects is emphasized. The specific objectives are to define the present state of the planetary life-support system; to ellucidate the underlying physical, chemical, and biological controls; and to provide the body of knowledge required to assess changes that might impact the future habitability of the Earth.

  4. Panel discussion on near-field coupled processes with emphasis on performance assessment

    SciTech Connect

    Codell, R.B.; Baca, R.G.; Ahola, M.P.

    1996-04-01

    The presentations in this panel discussion involve the general topic of near-field coupled processes and postclosure performance assessment with an emphasis on rock mechanics. The potential impact of near-field rock mass deformation on repository performance was discussed, as well as topics including long term excavation deterioration, the performance of geologic seals, and coupled processes concerning rock mechanics in performance assessments.

  5. The NEON Aquatic Network: Expanding the Availability of Biogeochemical Data

    NASA Astrophysics Data System (ADS)

    Vance, J. M.; Bohall, C.; Fitzgerald, M.; Utz, R.; Parker, S. M.; Roehm, C. L.; Goodman, K. J.; McLaughlin, B.

    2013-12-01

    Aquatic ecosystems are facing unprecedented pressure from climate change and land-use practices. Invasive species, whether plant, animal, insect or microbe present additional threat to aquatic ecosystem services. There are significant scientific challenges to understanding how these forces will interact to affect aquatic ecosystems, as the flow of energy and materials in the environment is driven by multivariate and non-linear biogeochemical cycles. The National Ecological Observatory Network (NEON) will collect and provide observational data across multiple scales. Sites were selected to maximize representation of major North American ecosystems using a multivariate geographic clustering method that partitioned the continental US, AK, HI, and Puerto Rico into 20 eco-climatic domains. The NEON data collection systems and methods are designed to yield standardized, near real-time data subjected to rigorous quality controls prior to public dissemination through an online data portal. NEON will collect data for 30 years to facilitate spatial-temporal analysis of environmental responses and drivers of ecosystem change, ranging from local through continental scales. Here we present the NEON Aquatic Network, a multi-parameter network consisting of a combination of in situ sensor and observational data. This network will provide data to examine biogeochemical, biological, hydrologic and geomorphic metrics at 36 sites, which are a combination of small 1st/2nd order wadeable streams, large rivers and lakes. A typical NEON Aquatic site will host up to two in-stream sensor sets designed to collect near-continuous water quality data (e.g. pH/ORP, temperature, conductivity, dissolved oxygen, CDOM) along with up to 8 shallow groundwater monitoring wells (level, temp., cond.), and a local meteorological station (e.g. 2D wind speed, PAR, barometric pressure, temperature, net radiation). These coupled sensor suites will be complemented by observational data (e.g. water

  6. Eddy Permitting Simulations of Biogeochemical Cycles in the Global Ocean

    NASA Astrophysics Data System (ADS)

    Sumata, H.; Hashioka, T.; Suzuki, T.; Yamanaka, Y.

    2008-12-01

    A 3D ecosystem-biogeochemical model simulation for the global domain is performed in order to investigate variability of oceanic ecosystem on time scales of years to decades. The model has a horizontal resolution of 1/4 times 1/6 degrees and 51 vertical levels, covering the entire domain of the world ocean. The ecosystem- biogeochemical part of the model is based on NEMURO (North Pacific Ecosystem Model Used for Regional Oceanography), and is coupled with CCSR Ocean Component Model (COCO) version 4.3 by an offline technique. The physical part of the model is driven by the inter-annual forcing by common ocean-ice reference experiments (CORE) data from 1958 to 2004, and reasonably simulates inter-annual to decadal variabilities of ocean conditions related to biogeochemical cycles. These properties of the physical model with its eddying filed enable us to reproduce the realistic distributions of nutrients and plankton productions. Comparisons with historical station data show that the model also reasonably simulates the observed variabilities of ecosystem on time scales of years to decades. In particular, the model captures the transitions of biogeochemical cycles associated with regime shifts.

  7. COUPLING

    DOEpatents

    Frisch, E.; Johnson, C.G.

    1962-05-15

    A detachable coupling arrangement is described which provides for varying the length of the handle of a tool used in relatively narrow channels. The arrangement consists of mating the key and keyhole formations in the cooperating handle sections. (AEC)

  8. Thin film coating process using an inductively coupled plasma

    DOEpatents

    Kniseley, Richard N.; Schmidt, Frederick A.; Merkle, Brian D.

    1990-01-30

    Thin coatings of normally solid materials are applied to target substrates using an inductively coupled plasma. Particles of the coating material are vaporized by plasma heating, and pass through an orifice to a first vacuum zone in which the particles are accelerated to a velocity greater than Mach 1. The shock wave generated in the first vacuum zone is intercepted by the tip of a skimmer cone that provides a second orifice. The particles pass through the second orifice into a second zone maintained at a higher vacuum and impinge on the target to form the coating. Ultrapure coatings can be formed.

  9. Biogeochemical processes controlling methane in gassy coastal sediments—Part 2: groundwater flow control of acoustic turbidity in Eckernförde Bay Sediments

    NASA Astrophysics Data System (ADS)

    Albert, Daniel B.; Martens, Christopher S.; Alperin, Marc J.

    1998-12-01

    /shallower onset of methanogenesis, but they also aid loss of methane through advection. A diagenetic model that couples the biogeochemistry of sulfate and methane is used to explain the presence or absence of methane gas in these sediments in relation to the flow rate of fresh groundwater from below. Model results indicate that acoustic windows within otherwise acoustically turbid sediments of the bay are likely due to relatively higher rates of vertical advection of fresh groundwater. The gassy pockmark, however, with an even higher vertical advection rate, seems to require the input of additional reactive organic carbon to explain its vertical methane distribution.

  10. Understanding Biogeochemical and Hydrological Processes in a Reservoir, Kentucky Lake (USA), Using Long-term Monitoring and Real-time Sensors

    NASA Astrophysics Data System (ADS)

    Hendricks, S. P.; White, D.; Williamson, M.; Hooks, R.

    2010-12-01

    . Additional real-time monitoring sites will be located in each stream. We presently are evaluating calibration needs, issues, and performance in a continuous-measurement environment. Continuous, high-resolution water quality and meteorological data coupled with the long-term (16-day interval over 22 years) water quality monitoring program will be extremely valuable in helping us understand constituent and hydrological fluxes within Kentucky Lake and the influence of contrasting land-use watersheds in the Tennessee River basin.

  11. The biogeochemical footprint of agricultural soil erosion

    NASA Astrophysics Data System (ADS)

    Govers, Gerard; Van Oost, Kristof; Wang, Zhengang

    2015-04-01

    Global biogeochemical cycles are a key component of the functioning of the Earth System: these cycles are all, to a varying extent, disturbed by human activities which not only has dramatic consequences for the global climate but also for the acidity of the world's oceans. It is only relatively recently that the role of lateral fluxes related to surface water movement and soil erosion and deposition (and the way those fluxes are modified by human action) is explicitly considered by the scientific community. In this paper we present an overview of our present-day understanding of the role of agricultural soil erosion in the global cycles of carbon, nitrogen, phosphorous and silica. We discuss the major processes through which erosion affects these global cycles and pay particular attention to the knowledge gaps that prevent us from accurately assessing the impact of soil erosion on global biogeochemical cycling at different temporal scales. Furthering our understanding (and better constraining our estimates) will require progress both in terms of model development and process understanding. Research needs can be most clearly identified with respect to soil organic carbon: (i) at present, large-scale soil erosion (and deposition) models are poorly constrained so that the amount of carbon mobilised by erosion (and its fate) cannot be accurately estimated and (ii) the fate of soil organic carbon buried by deposition or delivered to river network is poorly understood. Uncertainties for N, P and Si are larger than those for C as we have less information on the amount of these elements stored in agricultural soils and/or do not fully understand how these elements cycle through the soil/plant system. Agricultural soil erosion does not affect soil functioning through its effect on biogeochemical cycling. Erosion directly affects soil hydrological functioning and is likely to affect weathering processes and soil production. Addressing all these issues requires the

  12. 3D Modeling of influence of oxygenated inflows on biogeochemical structure of redox-layer of enclosed seas

    NASA Astrophysics Data System (ADS)

    Podymov, O.

    2009-04-01

    In this study we used a coupled hydrophysical-biogeochemical model. Biogeochemical processes were described with O-N-S-P-Mn-Fe ROLM model (Yakushev et al, 2007), designed to study processes of organic matter (OM) formation and decay, reduction and oxidation of species of nitrogen, sulphur, manganese and iron, transformation of phosphorus species. Phytoplankton, zooplankton and bacteria were also parameterized and divided into four groups according to their relation to particular energy source and to OM transformation. Hydrophysical processes where described with 3D General Estuarine Transport Model (Burchard et al, 2004). We modeled the influence of oxygenated intrusions on the vertical biogeochemical structure of the central Gotland Sea. The model simulations demonstrate that a complete ventilation of the Gotland Deep bottom water caused by massive inflows of oxygenated North Sea water led to substantial changes of the vertical biogeochemical structure within this basin. During the inflow events large amounts of iron and manganese precipitate and discharge from the water column. In this phase redox reactions are accelerated and growth of bacteria leads to an increase of particulate matter content and consecutive particle sedimentation. An unbalanced structure of water column exists during the period of reestablishment of anoxic conditions. Its appearance is related to the absence of Mn species that play the dominant role in the oxidation-reduction reactions at the pelagic redox interfaces. This unbalanced structure can serve as a biotope for a development of untypical microbial redox-cline reactions (i.e. anammox). According to the model simulations the duration of the reestablishment period for a steady state of biogeochemistry after a complete flushing is about 1.5 years.

  13. Low power, compact charge coupled device signal processing system

    NASA Technical Reports Server (NTRS)

    Bosshart, P. W.; Buss, D. D.; Eversole, W. L.; Hewes, C. R.; Mayer, D. J.

    1980-01-01

    A variety of charged coupled devices (CCDs) for performing programmable correlation for preprocessing environmental sensor data preparatory to its transmission to the ground were developed. A total of two separate ICs were developed and a third was evaluated. The first IC was a CCD chirp z transform IC capable of performing a 32 point DFT at frequencies to 1 MHz. All on chip circuitry operated as designed with the exception of the limited dynamic range caused by a fixed pattern noise due to interactions between the digital and analog circuits. The second IC developed was a 64 stage CCD analog/analog correlator for performing time domain correlation. Multiplier errors were found to be less than 1 percent at designed signal levels and less than 0.3 percent at the measured smaller levels. A prototype IC for performing time domain correlation was also evaluated.

  14. An Integrated Biogeochemical and Biophysical Analysis of Bioenergy Crops

    NASA Astrophysics Data System (ADS)

    Liang, M.; Song, Y.; Barman, R.; Jain, A. K.

    2010-12-01

    Bioenergy crops are becoming increasingly important with growing concerns about the energy demand and climate change and the need to replace fossil fuels with carbon-neutral renewable sources of energy. The transition to a biofuel-based energy supply raises many questions such as: how and where to grow energy crops, what will be the impacts of growing large scale biofuel crops on climate system, the hydrological cycle and soil biogeochemistry. We are developing and applying an integrated system modeling framework to investigate the biophysical, physiological, and biogeochemical systems governing important processes that regulate crop growth such as water, energy and nutrient cycles. The framework has a two-big-leaf canopy scheme for photosynthesis, stomatal conductance, leaf temperature and energy fluxes. The soil/snow hydrology consists of 10 layers for soil and up to 5 layers for snow. The biogeochemistry component explicitly accounts for coupled carbon and nitrogen dynamics. The feedstocks currently considered include corn stover, Miscanthus and switchgrass. The parameters used for simulation of each crop have been calibrated using field experimental data from the US. The use of this modeling capability will be demonstrated through its applications to study the environmental effects (through changes in albedo and evapotranspiration) of biofuel production as well as the effective management practice in the United States.

  15. Coupled Biogeochemical Processes Governing the Stability of Bacteriogenic Uraninite and Release of U(VI) in Heterogeneous Media: Molecular to Meter Scales

    SciTech Connect

    Bargar, John R.

    2006-11-15

    In-situ reductive biotransformation of subsurface U(VI) to U(IV) (as ?UO2?) has been proposed as a bioremediation method to immobilize uranium at contaminated DOE sites. The chemical stability of bacteriogenic ?UO2? is the seminal issue governing its success as an in-situ waste form in the subsurface. The structure and properties of chemically synthesized UO2+x have been investigated in great detail. It has been found to exhibit complex structural disorder, with nonstoichiometry being common, hence the designation ?UO2+x?, where 0 < x < 0.25. Little is known about the structures and properties of the important bacteriogenic analogs, which are believed to occur as nanoparticles in the environment. Chemically synthesized UO2+x exhibits an open fluorite structure and is known to accommodate significant doping of divalent cations. The extent to which bacteriogenic UO2+x incorporates common ground water cations (e.g., Ca2+) has not been investigated, and little is known about nonstoichiometry and structure defects in the bacteriogenic material. Particle size, nonstoichiometry, and doping may significantly alter the reactivity, and hence stability, of bacteriogenic UO2+x in the subsurface. The presence of associated sulfide minerals, and solid phase oxidants such as bacteriogenic Mn oxides may also affect the longevity of bacteriogenic UO2 in the subsurface.

  16. Effect of Biogeochemical Redox Processes on the Fate and Transport of As and U at an Abandoned Uranium Mine Site: an X-ray Absorption Spectroscopy Study

    SciTech Connect

    Troyer, Lyndsay D.; Stone, James J.; Borch, Thomas

    2014-01-28

    Although As can occur in U ore at concentrations up to 10 wt-%, the fate and transport of both U and As at U mine tailings have not been previously investigated at a watershed scale. The major objective of this study was to determine primary chemical and physical processes contributing to transport of both U and As to a down gradient watershed at an abandoned U mine site in South Dakota. Uranium is primarily transported by erosion at the site, based on decreasing concentrations in sediment with distance from the tailings. equential extractions and U X-ray absorption near-edge fine structure (XANES) fitting indicate that U is immobilised in a near-source sedimentation pond both by prevention of sediment transport and by reduction of UVI to UIV. In contrast to U, subsequent release of As to the watershed takes place from the pond partially due to reductive dissolution of Fe oxy(hydr)oxides. However, As is immobilised by adsorption to clays and Fe oxy(hydr)oxides in oxic zones and by formation of As–sulfide mineral phases in anoxic zones down gradient, indicated by sequential extractions and As XANES fitting. This study indicates that As should be considered during restoration of uranium mine sites in order to prevent transport.

  17. Biogeochemical processes involving dissolved CO2 and CH4 at Albano, Averno, and Monticchio meromictic volcanic lakes (Central-Southern Italy)

    NASA Astrophysics Data System (ADS)

    Cabassi, Jacopo; Tassi, Franco; Vaselli, Orlando; Fiebig, Jens; Nocentini, Matteo; Capecchiacci, Francesco; Rouwet, Dmitri; Bicocchi, Gabriele

    2013-01-01

    This paper focuses on the chemical and isotopic features of dissolved gases (CH4 and CO2) from four meromictic lakes hosted in volcanic systems of Central-Southern Italy: Lake Albano (Alban Hills), Lake Averno (Phlegrean Fields), and Monticchio Grande and Piccolo lakes (Mt. Vulture). Deep waters in these lakes are characterized by the presence of a significant reservoir of extra-atmospheric dissolved gases mainly consisting of CH4 and CO2. The δ13C-CH4 and δD-CH4 values of dissolved gas samples from the maximum depths of the investigated lakes (from -66.8 to -55.6 ‰ V-PDB and from -279 to -195 ‰ V-SMOW, respectively) suggest that CH4 is mainly produced by microbial activity. The δ13C-CO2 values of Lake Grande, Lake Piccolo, and Lake Albano (ranging from -5.8 to -0.4 ‰ V-PDB) indicate a significant CO2 contribution from sublacustrine vents originating from (1) mantle degassing and (2) thermometamorphic reactions involving limestone, i.e., the same CO2 source feeding the regional thermal and cold CO2-rich fluid emissions. In contrast, the relatively low δ13C-CO2 values (from -13.4 to -8.2 ‰ V-PDB) of Lake Averno indicate a prevalent organic CO2. Chemical and isotopic compositions of dissolved CO2 and CH4 at different depths are mainly depending on (1) CO2 inputs from external sources (hydrothermal and/or anthropogenic); (2) CO2-CH4 isotopic exchange; and (3) methanogenic and methanotrophic activity. In the epilimnion, vertical water mixing, free oxygen availability, and photosynthesis cause the dramatic decrease of both CO2 and CH4 concentrations. In the hypolimnion, where the δ13C-CO2 values progressively increase with depth and the δ13C-CH4 values show an opposite trend, biogenic CO2 production from CH4 using different electron donor species, such as sulfate, tend to counteract the methanogenesis process whose efficiency achieves its climax at the water-bottom sediment interface. Theoretical values, calculated on the basis of δ13C-CO2 values, and

  18. Coupled model of physical and biological processes affecting maize pollination

    NASA Astrophysics Data System (ADS)

    Arritt, R.; Westgate, M.; Riese, J.; Falk, M.; Takle, E.

    2003-04-01

    Controversy over the use of genetically modified (GM) crops has led to increased interest in evaluating and controlling the potential for inadvertent outcrossing in open-pollinated crops such as maize. In response to this problem we have developed a Lagrangian model of pollen dispersion as a component of a coupled end-to-end (anther to ear) physical-biological model of maize pollination. The Lagrangian method is adopted because of its generality and flexibility: first, the method readily accommodates flow fields of arbitrary complexity; second, each element of the material being transported can be identified by its source, time of release, or other properties of interest. The latter allows pollen viability to be estimated as a function of such factors as travel time, temperature, and relative humidity, so that the physical effects of airflow and turbulence on pollen dispersion can be considered together with the biological aspects of pollen release and viability. Predicted dispersion of pollen compares well both to observations and to results from a simpler Gaussian plume model. Ability of the Lagrangian model to handle complex air flows is demonstrated by application to pollen dispersion in the vicinity of an agricultural shelter belt. We also show results indicating that pollen viability can be quantified by an "aging function" that accounts for temperature, humidity, and time of exposure.

  19. Selenium source identification and biogeochemical processes controlling selenium in surface water and biota, Kendrick Reclamation Project, Wyoming, U.S.A.

    USGS Publications Warehouse

    Naftz, D.L.; See, R.B.; Ramirez, P.

    1993-01-01

    The major tributaries draining the Kendrick Reclamation Project (KRP) account for an average of 52% of the total Se load measured in the North Platte River downstream from Casper, Wyoming. The Casper Creek drainage basin contributed the largest Se load of the five tributary sites to the North Platte River. The 4-d average Se concentration in water samples from one site in the part of the North Platte River that receives irrigation return flows exceeded the 5 ??g/l U.S. Environmental Protection Agency's aquatic life criterion five time during a 50-d monitoring period in 1989. In agreement with the water-quality data, muscle and liver tissue rom rainbow trout collected from the same part of the North Platte River had Se concentrations exceeding levels known to cause reproductive failure and chronic Se poisoning. On the basis of Se: Cl, 18O/16O and D/H ratios in water from Goose and Rasmus Lee Lakes (closed-basin systems), the large Se concentrations in those lakes were derived by natural evaporation of irrigation water without leaching of soluble forms of Se from soil or rocks. Water samples from Thirtythree Mile Reservoir and Illco Pond (flow-through systems) showed considerable enrichment in Se over evaporative concentration, presumably due to leaching and desorption of Se from soil and rock. The Se: Cl ratios of irrigation drain water collected from the KRP indicate that leaching and desorption of soluble forms of Se from soils and rocks are the dominant processes in drain water. Results of a Wilcoxon matched-pairs test for 43 paired drain-water samples collected during June and August 1988, indicated there is a statistically larger concentration of Se (0.01 significance level) during the June sampling period. The larger concentrations of Se and other chemical constitutents during the early part of the irrigation season probably were due to dissolution of seleniferous salts that have accumulated in soils within the KRP since the last irrigation season. The large

  20. Pore-Scale Process Coupling and Effective Surface Reaction Rates in Heterogeneous Subsurface Materials

    SciTech Connect

    Liu, Chongxuan; Liu, Yuanyuan; Kerisit, Sebastien N.; Zachara, John M.

    2015-09-01

    This manuscript provides a review of pore-scale researches in literature including experimental and numerical approaches, and scale-dependent behavior of geochemical and biogeochemical reaction rates in heterogeneous porous media. A mathematical equation that can be used to predict the scale-dependent behavior of geochemical reaction rates in heterogeneous porous media has been derived. The derived effective rate expression explicitly links the effective reaction rate constant to the intrinsic rate constant, and to the pore-scale variations in reactant concentrations in porous media. Molecular simulations to calculate the intrinsic rate constants were provided. A few examples of pore-scale simulations were used to demonstrate the application of the equation to calculate effective rate constants in heterogeneous materials. The results indicate that the deviation of effective rate constant from the intrinsic rate in heterogeneous porous media is caused by the pore-scale distributions of reactants and their correlation, which are affected by the pore-scale coupling of reactions and transport.

  1. Oceanographic and Biogeochemical Insights from Diatom Genomes

    NASA Astrophysics Data System (ADS)

    Bowler, Chris; Vardi, Assaf; Allen, Andrew E.

    2010-01-01

    Diatoms are the most successful group of eukaryotic phytoplankton in the modern ocean and have risen to dominance relatively quickly over the last 100 million years. Recently completed whole genome sequences from two species of diatom, Thalassiosira pseudonana and Phaeodactylum tricornutum, have revealed a wealth of information about the evolutionary origins and metabolic adaptations that have led to their ecological success. A major finding is that they have incorporated genes both from their endosymbiotic ancestors and by horizontal gene transfer from marine bacteria. This unique melting pot of genes encodes novel capacities for metabolic management, for example, allowing the integration of a urea cycle into a photosynthetic cell. In this review we show how genome-enabled approaches are being leveraged to explore major phenomena of oceanographic and biogeochemical relevance, such as nutrient assimilation and life histories in diatoms. We also discuss how diatoms may be affected by climate change-induced alterations in ocean processes.

  2. Biogeochemical cycling in the Strait of Georgia.

    PubMed

    Johannessen, S C; Macdonald, R W; Burd, B; van Roodselaar, A

    2008-12-01

    The papers in this special issue present the results of a five-year project to study sedimentary biogeochemical processes in the Strait of Georgia, with special emphasis on the near-field of a large municipal outfall. Included in this special issue are overviews of the sedimentology, benthic biology, status of siliceous sponge reefs and distribution of organic carbon in the water column. Other papers address the cycling of contaminants (PCBs, PBDEs) and redox metals in the sediment, a method to map the extent of the influence of municipal effluent from staining on benthic bivalves, and the relationships among geochemical conditions and benthic abundance and diversity. The latter set of papers addresses the role of municipal effluent as a pathway of organic carbon and other contaminants into the Strait of Georgia and the effect of the effluent on benthic geochemistry and biology. PMID:19022498

  3. Ocean fronts drive marine fishery production and biogeochemical cycling.

    PubMed

    Woodson, C Brock; Litvin, Steven Y

    2015-02-10

    Long-term changes in nutrient supply and primary production reportedly foreshadow substantial declines in global marine fishery production. These declines combined with current overfishing, habitat degradation, and pollution paint a grim picture for the future of marine fisheries and ecosystems. However, current models forecasting such declines do not account for the effects of ocean fronts as biogeochemical hotspots. Here we apply a fundamental technique from fluid dynamics to an ecosystem model to show how fronts increase total ecosystem biomass, explain fishery production, cause regime shifts, and contribute significantly to global biogeochemical budgets by channeling nutrients through alternate trophic pathways. We then illustrate how ocean fronts affect fishery abundance and yield, using long-term records of anchovy-sardine regimes and salmon abundances in the California Current. These results elucidate the fundamental importance of biophysical coupling as a driver of bottom-up vs. top-down regulation and high productivity in marine ecosystems. PMID:25624488

  4. Ocean fronts drive marine fishery production and biogeochemical cycling

    PubMed Central

    Woodson, C. Brock; Litvin, Steven Y.

    2015-01-01

    Long-term changes in nutrient supply and primary production reportedly foreshadow substantial declines in global marine fishery production. These declines combined with current overfishing, habitat degradation, and pollution paint a grim picture for the future of marine fisheries and ecosystems. However, current models forecasting such declines do not account for the effects of ocean fronts as biogeochemical hotspots. Here we apply a fundamental technique from fluid dynamics to an ecosystem model to show how fronts increase total ecosystem biomass, explain fishery production, cause regime shifts, and contribute significantly to global biogeochemical budgets by channeling nutrients through alternate trophic pathways. We then illustrate how ocean fronts affect fishery abundance and yield, using long-term records of anchovy–sardine regimes and salmon abundances in the California Current. These results elucidate the fundamental importance of biophysical coupling as a driver of bottom–up vs. top–down regulation and high productivity in marine ecosystems. PMID:25624488

  5. Ocean fronts drive marine fishery production and biogeochemical cycling.

    PubMed

    Woodson, C Brock; Litvin, Steven Y

    2015-02-10

    Long-term changes in nutrient supply and primary production reportedly foreshadow substantial declines in global marine fishery production. These declines combined with current overfishing, habitat degradation, and pollution paint a grim picture for the future of marine fisheries and ecosystems. However, current models forecasting such declines do not account for the effects of ocean fronts as biogeochemical hotspots. Here we apply a fundamental technique from fluid dynamics to an ecosystem model to show how fronts increase total ecosystem biomass, explain fishery production, cause regime shifts, and contribute significantly to global biogeochemical budgets by channeling nutrients through alternate trophic pathways. We then illustrate how ocean fronts affect fishery abundance and yield, using long-term records of anchovy-sardine regimes and salmon abundances in the California Current. These results elucidate the fundamental importance of biophysical coupling as a driver of bottom-up vs. top-down regulation and high productivity in marine ecosystems.

  6. "The best is always yet to come": Relationship stages and processes among young LGBT couples.

    PubMed

    Macapagal, Kathryn; Greene, George J; Rivera, Zenaida; Mustanski, Brian

    2015-06-01

    Limited research has examined relationship development among lesbian, gay, bisexual, and transgender (LGBT) couples in emerging adulthood. A better understanding of LGBT couples can inform the development of relationship education programs that reflect their unique needs. The following questions guided this study: (a) What are the stages and processes during young LGBT couples' relationship development? and (b) How do these compare with existing literature on heterosexual adults? A secondary goal was to explore similarities and differences between couples assigned male (MAAB) and female at birth (FAAB). Thirty-six couples completed interviews on their relationship history. Qualitative analyses showed that relationship stages and processes were similar to past research on heterosexuals, but participants' subjective experiences reflected their LGBT identities and emerging adulthood, which exerted additional stress on the relationship. These factors also affected milestones indicative of commitment among heterosexual adults (e.g., introducing partner to family). Mixed methods analyses indicated that MAAB couples described negotiating relationship agreements and safe sex in more depth than FAAB couples. Relationship development models warrant modifications to consider the impact of sexual and gender identity and emerging adulthood when applied to young LGBT couples. These factors should be addressed in interventions to promote relationship health among young LGBT couples.

  7. "The best is always yet to come": Relationship stages and processes among young LGBT couples.

    PubMed

    Macapagal, Kathryn; Greene, George J; Rivera, Zenaida; Mustanski, Brian

    2015-06-01

    Limited research has examined relationship development among lesbian, gay, bisexual, and transgender (LGBT) couples in emerging adulthood. A better understanding of LGBT couples can inform the development of relationship education programs that reflect their unique needs. The following questions guided this study: (a) What are the stages and processes during young LGBT couples' relationship development? and (b) How do these compare with existing literature on heterosexual adults? A secondary goal was to explore similarities and differences between couples assigned male (MAAB) and female at birth (FAAB). Thirty-six couples completed interviews on their relationship history. Qualitative analyses showed that relationship stages and processes were similar to past research on heterosexuals, but participants' subjective experiences reflected their LGBT identities and emerging adulthood, which exerted additional stress on the relationship. These factors also affected milestones indicative of commitment among heterosexual adults (e.g., introducing partner to family). Mixed methods analyses indicated that MAAB couples described negotiating relationship agreements and safe sex in more depth than FAAB couples. Relationship development models warrant modifications to consider the impact of sexual and gender identity and emerging adulthood when applied to young LGBT couples. These factors should be addressed in interventions to promote relationship health among young LGBT couples. PMID:26053345

  8. Solute coupled diffusion in osmotically driven membrane processes.

    PubMed

    Hancock, Nathan T; Cath, Tzahi Y

    2009-09-01

    Forward osmosis (FO) is an emerging water treatment technology with potential applications in desalination and wastewater reclamation. In FO, water is extracted from a feed solution using the high osmotic pressure of a hypertonic solution that flows on the opposite side of a semipermeable membrane; however, solutes diffuse simultaneously through the membrane in both directions and may jeopardize the process. In this study, we have comprehensively explored the effects of different operating conditions on the forward diffusion of solutes commonly found in brackish water and seawater, and reverse diffusion of common draw solution solutes. Results show that reverse transport of solutes through commercially available FO membranes range between 80 mg to nearly 3,000 mg per liter of water produced. Divalent feed solutes have low permeation rates (less than 1 mmol/m2-hr) while monovalent ions and uncharged solutes exhibit higher permeation. Findings have significant implications on the performance and sustainability of the FO process.

  9. Solute coupled diffusion in osmotically driven membrane processes.

    PubMed

    Hancock, Nathan T; Cath, Tzahi Y

    2009-09-01

    Forward osmosis (FO) is an emerging water treatment technology with potential applications in desalination and wastewater reclamation. In FO, water is extracted from a feed solution using the high osmotic pressure of a hypertonic solution that flows on the opposite side of a semipermeable membrane; however, solutes diffuse simultaneously through the membrane in both directions and may jeopardize the process. In this study, we have comprehensively explored the effects of different operating conditions on the forward diffusion of solutes commonly found in brackish water and seawater, and reverse diffusion of common draw solution solutes. Results show that reverse transport of solutes through commercially available FO membranes range between 80 mg to nearly 3,000 mg per liter of water produced. Divalent feed solutes have low permeation rates (less than 1 mmol/m2-hr) while monovalent ions and uncharged solutes exhibit higher permeation. Findings have significant implications on the performance and sustainability of the FO process. PMID:19764248

  10. Scaling hyporheic exchange and its influence on biogeochemical reactions in aquatic ecosystems

    NASA Astrophysics Data System (ADS)

    O'Connor, Ben L.; Harvey, Judson W.

    2008-12-01

    Hyporheic exchange and biogeochemical reactions are difficult to quantify because of the range in fluid-flow and sediment conditions inherent to streams, wetlands, and nearshore marine ecosystems. Field measurements of biogeochemical reactions in aquatic systems are impeded by the difficulty of measuring hyporheic flow simultaneously with chemical gradients in sediments. Simplified models of hyporheic exchange have been developed using Darcy's law generated by flow and bed topography at the sediment-water interface. However, many modes of transport are potentially involved (molecular diffusion, bioturbation, advection, shear, bed mobility, and turbulence) with even simple models being difficult to apply in complex natural systems characterized by variable sediment sizes and irregular bed geometries. In this study, we synthesize information from published hyporheic exchange investigations to develop a scaling relationship for estimating mass transfer in near-surface sediments across a range in fluid-flow and sediment conditions. Net hyporheic exchange was quantified using an effective diffusion coefficient (De) that integrates all of the various transport processes that occur simultaneously in sediments, and dimensional analysis was used to scale De to shear stress velocity, roughness height, and permeability that describe fluid-flow and sediment characteristics. We demonstrated the value of the derived scaling relationship by using it to quantify dissolved oxygen (DO) uptake rates on the basis of DO profiles in sediments and compared them to independent flux measurements. The results support a broad application of the De scaling relationship for quantifying coupled hyporheic exchange and biogeochemical reaction rates in streams and other aquatic ecosystems characterized by complex fluid-flow and sediment conditions.

  11. Scaling hyporheic exchange and its influence on biogeochemical reactions in aquatic ecosystems

    USGS Publications Warehouse

    O'Connor, B.L.; Harvey, J.W.

    2008-01-01

    Hyporheic exchange and biogeochemical reactions are difficult to quantify because of the range in fluid-flow and sediment conditions inherent to streams, wetlands, and nearshore marine ecosystems. Field measurements of biogeochemical reactions in aquatic systems are impeded by the difficulty of measuring hyporheic flow simultaneously with chemical gradients in sediments. Simplified models of hyporheic exchange have been developed using Darcy's law generated by flow and bed topography at the sediment-water interface. However, many modes of transport are potentially involved (molecular diffusion, bioturbation, advection, shear, bed mobility, and turbulence) with even simple models being difficult to apply in complex natural systems characterized by variable sediment sizes and irregular bed geometries. In this study, we synthesize information from published hyporheic exchange investigations to develop a scaling relationship for estimating mass transfer in near-surface sediments across a range in fluid-flow and sediment conditions. Net hyporheic exchange was quantified using an effective diffusion coefficient (De) that integrates all of the various transport processes that occur simultaneously in sediments, and dimensional analysis was used to scale De to shear stress velocity, roughness height, and permeability that describe fluid-flow and sediment characteristics. We demonstrated the value of the derived scaling relationship by using it to quantify dissolved oxygen (DO) uptake rates on the basis of DO profiles in sediments and compared them to independent flux measurements. The results support a broad application of the De scaling relationship for quantifying coupled hyporheic exchange and biogeochemical reaction rates in streams and other aquatic ecosystems characterized by complex fluid-flow and sediment conditions.

  12. SHIMMER (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems

    NASA Astrophysics Data System (ADS)

    Bradley, J. A.; Anesio, A. M.; Singarayer, J. S.; Heath, M. R.; Arndt, S.

    2015-08-01

    SHIMMER (Soil biogeocHemIcal Model for Microbial Ecosystem Response) is a new numerical modelling framework which is developed as part of an interdisciplinary, iterative, model-data based approach fully integrating fieldwork and laboratory experiments with model development, testing, and application. SHIMMER is designed to simulate the establishment of microbial biomass and associated biogeochemical cycling during the initial stages of ecosystem development in glacier forefield soils. However, it is also transferable to other extreme ecosystem types (such as desert soils or the surface of glaciers). The model mechanistically describes and predicts transformations in carbon, nitrogen and phosphorus through aggregated components of the microbial community as a set of coupled ordinary differential equations. The rationale for development of the model arises from decades of empirical observation on the initial stages of soil development in glacier forefields. SHIMMER enables a quantitative and process focussed approach to synthesising the existing empirical data and advancing understanding of microbial and biogeochemical dynamics. Here, we provide a detailed description of SHIMMER. The performance of SHIMMER is then tested in two case studies using published data from the Damma Glacier forefield in Switzerland and the Athabasca Glacier in Canada. In addition, a sensitivity analysis helps identify the most sensitive and unconstrained model parameters. Results show that the accumulation of microbial biomass is highly dependent on variation in microbial growth and death rate constants, Q10 values, the active fraction of microbial biomass, and the reactivity of organic matter. The model correctly predicts the rapid accumulation of microbial biomass observed during the initial stages of succession in the forefields of both the case study systems. Simulation results indicate that primary production is responsible for the initial build-up of substrate that subsequently

  13. KINETICS AND MECHANISMS OF SOIL BIOGEOCHEMICAL PROCESSES

    EPA Science Inventory

    The application of kinetic studies to soil chemistry is useful to determine reaction mechanisms and fate of nutrients and environmental contaminants. How deeply one wishes to query the mechanism depends on the detail sought. Reactions that involve chemical species in more than on...

  14. Diagnosing coupled watershed processes using a fully-coupled groundwater, land-surface, surface water and mesoscale atmospheric model

    NASA Astrophysics Data System (ADS)

    Maxwell, R. M.; Kollet, S. J.; Chow, F. K.

    2007-12-01

    A variably-saturated groundwater flow model with an integrated overland flow component, a land-surface model and a mesoscale atmospheric model is used to examine the interplay between coupled water and energy processes. These processes are influenced by land-surface topography and subsurface heterogeneity. This parallel, integrated model simulates spatial variations in land-surface forcing driven by three-dimensional (3D) atmospheric and subsurface components. Spatial statistics are used to demonstrate spatial and temporal correlations between surface and lower atmospheric variables and water table depth. These correlations are particularly strong during times when the land surface temperatures trigger shifts in wind behavior, such as during early morning surface heating. Additionally, spectral transforms of subsurface arrival times are computed using a transient Lagrangian transport simulation. Macrodispersion is used to mimic the effects of subsurface heterogeneity for a range of Peclet numbers. The slopes of these transforms indicate fractal scaling of this system over a range of timescales. All of these techniques point to importance of realistically representing coupled processes and the need to understand and diagnose these processes in nature. This work was conducted under the auspices of the U. S. Department of Energy by the University of California, Lawrence Livermore National Laboratory (LLNL) under contract W-7405-Eng-48. This project was funded by the Laboratory Directed Research and Development Program at LLNL

  15. Coupling between mantle and surface processes: Insights from analogue modelling

    NASA Astrophysics Data System (ADS)

    Király, Ágnes; Sembroni, Andrea; Faccenna, Claudio; Funiciello, Francesca

    2014-05-01

    Thermal or density anomalies located beneath the lithosphere are thought to generate dynamic topography. Such a topographic signal compensates the viscous stresses originating from the anomaly driven mantle flow. It has been demonstrated that the erosion modulates the dynamic signal of topography changing the uplift rate by unload. The characteristic time for adjustments of dynamic topography due to surface erosion is likely similar to post-glacial rebound time (10000 - 50000 years). Here we present preliminary results of a new set of analogue models realized to study and quantify the contribution given by erosion to dynamic topography, during a process specifically driven by a positively buoyant deep anomaly. The adopted set up consists of a Plexiglas box (40x40x50 cm3) filled with glucose syrup as analogue upper mantle. A silicon plate positioned on the top of the syrup simulates the lithosphere. On the silicone plate is placed a thin layer of a high viscous glucose syrup which reproduces the upper, erodible layer of the crust. To simulate the positively buoyant anomaly we used an elastic, undeformable silicon ball free to rise by buoyancy in the syrup until the floating silicone plate is hit. The changes in topography have been monitored by using a 3D laser scan, while a side-view camera recorded the position of the rising ball in time. Data have been post-processed with image analysis techniques (e.g., Particle Image Velocimetry) in order to obtain the evolution of topography, uplift rate, erosion patterns of the top layer, bulge width and mantle circulation during the experiment. We ran experiments with and without the shallow, erodible crustal layer in order to quantify the effect of erosion on dynamic topography. Preliminary results showed that both the maximum topography and uplift rate are inversely proportional to the lithospheric thickness. The maximum uplift rate and the deformation of the lithospheric plate occurred just before the arrival of the

  16. Parasites on parasites: Coupled fluctuations in stacked contact processes

    NASA Astrophysics Data System (ADS)

    Court, Steven J.; Blythe, Richard A.; Allen, Rosalind J.

    2013-03-01

    We present a model for host-parasite dynamics which incorporates both vertical and horizontal transmission as well as spatial structure. Our model consists of stacked contact processes (CP), where the dynamics of the host is a simple CP on a lattice while the dynamics of the parasite is a secondary CP which sits on top of the host-occupied sites. In the simplest case, where infection does not incur any cost, we uncover a novel effect: a non-monotonic dependence of parasite prevalence on host turnover. Inspired by natural examples of hyperparasitism, we extend our model to multiple levels of parasites and identify a transition between the maintenance of a finite and infinite number of levels, which we conjecture is connected to a roughening transition in models of surface growth.

  17. CO2-ECBM related coupled physical and mechanical transport processes

    NASA Astrophysics Data System (ADS)

    Gensterblum, Y.; Sartorius, M.; Busch, A.; Krooss, B. M.; Littke, R.

    2012-12-01

    The interrelation of cleat transport processes and mechanical properties was investigated by permeability tests at different stress levels (60% to 130% of in-situ stress) with sorbing (CH4, CO2) and inert gases (N2, Ar, He) on a subbituminous A coal from the Surat Basin, Queensland Australia (figure). From the flow tests under controlled triaxial stress conditions the Klinkenberg-corrected "true" permeability coefficients and the Klinkenberg slip factors were derived. The "true"-, absolute or Klinkenberg-corrected permeability depends on gas type. Following the approach of Seidle et al. (1992) the cleat volume compressibility (cf) was calculated from observed changes in apparent permeability upon variation of external stress (at equal mean gas pressures). The observed effects also show a clear dependence on gas type. Due to pore or cleat compressibility the cleat aperture decreases with increasing effective stress. Vice versa, with increasing mean pore pressure at lower confining pressure an increase in permeability is observed, which is attributed to a widening of cleat aperture. Non-sorbing gases like helium and argon show higher apparent permeabilities than sorbing gases like methane and CO2. Permeability coefficients measured with successively increasing mean gas pressures were consistently lower than those determined at decreasing mean gas pressures. The kinetics of matrix transport processes were studied by sorption tests on different particle sizes at various moisture contents and temperatures (cf. Busch et al., 2006). Methane uptake rates were determined from the pressure decline curves recorded for each particle-size fraction, and "diffusion coefficients" were calculated using several unipore and bidisperse diffusion models. While the CH4 sorption capacity of moisture-equilibrated coals was significantly lower (by 50%) than that of dry coals, no hysteresis was observed between sorption and desorption on dry and moisture-equilibrated samples and the

  18. CO2-ECBM related coupled physical and mechanical transport processes

    NASA Astrophysics Data System (ADS)

    Gensterblum, Yves; Satorius, Michael; Busch, Andreas; Krooß, Bernhard

    2013-04-01

    The interrelation of cleat transport processes and mechanical properties was investigated by permeability tests at different stress levels (60% to 130% of in-situ stress) with sorbing (CH4, CO2) and inert gases (N2, Ar, He) on a sub bituminous A coal from the Surat Basin, Queensland Australia. From the flow tests under controlled triaxial stress conditions the Klinkenberg-corrected "true" permeability coefficients and the Klinkenberg slip factors were derived. The "true"-, absolute or Klinkenberg corrected permeability shows a gas type dependence. Following the approach of Seidle et al. (1992) the cleat volume compressibility (cf) was calculated from observed changes in apparent permeability upon variation of external stress (at equal mean gas pressures). The observed effects also show a clear dependence on gas type. Due to pore or cleat compressibility the cleat aperture decreases with increasing effective stress. Vice versa we observe with increasing mean pressure at lower confining pressure an increase in permeability which we attribute to a cleat aperture widening. The cleat volume compressibility (cf) also shows a dependence on the mean pore pressure. Non-sorbing gases like helium and argon show higher apparent permeabilities than sorbing gases like methane. Permeability coefficients measured with successively increasing mean gas pressures were consistently lower than those determined at decreasing mean gas pressures. This permeability hysteresis is in accordance with results reported by Harpalani and McPherson (1985). The kinetics of matrix transport processes were studied by sorption tests on different particle sizes at various moisture contents and temperatures (cf. Busch et al., 2006). Methane uptake rates were determined from the pressure decline curves recorded for each particle-size fraction, and "diffusion coefficients" were calculated using several unipore and bidisperse diffusion models. While the CH4 sorption capacity of moisture-equilibrated coals

  19. CO2-ECBM related coupled physical and mechanical transport processes

    NASA Astrophysics Data System (ADS)

    Gensterblum, Y.; Sartorius, M.; Busch, A.; Cumming, D.; Krooss, B. M.

    2012-04-01

    The interrelation of cleat transport processes and mechanical properties was investigated by permeability tests at different stress levels (60% to 130% of in-situ stress) with sorbing (CH4, CO2) and inert gases (N2, Ar, He) on a sub bituminous A coal from the Surat Basin, Queensland Australia. From the flow tests under controlled triaxial stress conditions the Klinkenberg-corrected "true" permeability coefficients and the Klinkenberg slip factors were derived. The "true"-, absolute or Klinkenberg corrected permeability shows a gas type dependence. Following the approach of Seidle et al. (1992) the cleat volume compressibility (cf) was calculated from observed changes in apparent permeability upon variation of external stress (at equal mean gas pressures). The observed effects also show a clear dependence on gas type. Due to pore or cleat compressibility the cleat aperture decreases with increasing effective stress. Vice versa we observe with increasing mean pressure at lower confining pressure an increase in permeability which we attribute to a cleat aperture widening. The cleat volume compressibility (cf) also shows a dependence on the mean pore pressure. Non-sorbing gases like helium and argon show higher apparent permeabilities than sorbing gases like methane. Permeability coefficients measured with successively increasing mean gas pressures were consistently lower than those determined at decreasing mean gas pressures. This permeability hysteresis is in accordance with results reported by Harpalani and McPherson (1985). The kinetics of matrix transport processes were studied by sorption tests on different particle sizes at various moisture contents and temperatures (cf. Busch et al., 2006). Methane uptake rates were determined from the pressure decline curves recorded for each particle-size fraction, and "diffusion coefficients" were calculated using several unipore and bidisperse diffusion models. While the CH4 sorption capacity of moisture-equilibrated coals

  20. Searching for Biogeochemical Cycles on Mars

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.

    1997-01-01

    The search for life on Mars clearly benefits from a rigorous, yet broad, definition of life that compels us to consider all possible lines of evidence for a martian biosphere. Recent studies in microbial ecology illustrate that the classic definition of life should be expanded beyond the traditional definition of a living cell. The traditional defining characteristics of life are threefold. First, life is capable of metabolism, that is, it performs chemical reactions that utilize energy and also synthesize its cellular constituents. Second, life is capable of self-replication. Third, life can evolve in order to adapt to environmental changes. An expanded, ecological definition of life also recognizes that life is a community of organisms that must interact with their nonliving environment through processes called biogeochemical cycles. This regenerative processing maintains, in an aqueous conditions, a dependable supply of nutrients and energy for growth. In turn, life can significantly affect those processes that control the exchange of materials between the atmosphere, ocean, and upper crust. Because metabolic processes interact directly with the environment, they can alter their surroundings and thus leave behind evidence of life. For example, organic matter is produced from single-carbon-atom precursors for the biosynthesis of cellular constituents. This leads to a reservoir of reduced carbon in sediments that, in turn, can affect the oxidation state of the atmosphere. The harvesting of chemical energy for metabolism often employs oxidation-reduction reactions that can alter the chemistry and oxidation state of the redox-sensitive elements carbon, sulfur, nitrogen, iron, and manganese. Have there ever been biogeochemical cycles on Mars? Certain key planetary processes can offer clues. Active volcanism provides reduced chemical species that biota can use for organic synthesis. Volcanic carbon dioxide and methane can serve as greenhouse gases. Thus the

  1. Parameterization of biogeochemical sediment-water fluxes using in situ measurements and a diagenetic model

    NASA Astrophysics Data System (ADS)

    Laurent, A.; Fennel, K.; Wilson, R.; Lehrter, J.; Devereux, R.

    2016-01-01

    Diagenetic processes are important drivers of water column biogeochemistry in coastal areas. For example, sediment oxygen consumption can be a significant contributor to oxygen depletion in hypoxic systems, and sediment-water nutrient fluxes support primary productivity in the overlying water column. Moreover, nonlinearities develop between bottom water conditions and sediment-water fluxes due to loss of oxygen-dependent processes in the sediment as oxygen becomes depleted in bottom waters. Yet, sediment-water fluxes of chemical species are often parameterized crudely in coupled physical-biogeochemical models, using simple linear parameterizations that are only poorly constrained by observations. Diagenetic models that represent sediment biogeochemistry are available, but rarely are coupled to water column biogeochemical models because they are computationally expensive. Here, we apply a method that efficiently parameterizes sediment-water fluxes of oxygen, nitrate and ammonium by combining in situ measurements, a diagenetic model and a parameter optimization method. As a proof of concept, we apply this method to the Louisiana Shelf where high primary production, stimulated by excessive nutrient loads from the Mississippi-Atchafalaya River system, promotes the development of hypoxic bottom waters in summer. The parameterized sediment-water fluxes represent nonlinear feedbacks between water column and sediment processes at low bottom water oxygen concentrations, which may persist for long periods (weeks to months) in hypoxic systems such as the Louisiana Shelf. This method can be applied to other systems and is particularly relevant for shallow coastal and estuarine waters where the interaction between sediment and water column is strong and hypoxia is prone to occur due to land-based nutrient loads.

  2. Understanding Biogeochemical Transformations Of Trace Elements In Multi Metal-Rich Geomaterials Under Stimulated Redox Conditions

    EPA Science Inventory

    Natural and anthropogenic influences on hydrological conditions can induce periodic or long-term reduced conditions in geologic materials. Such conditions can cause significant impacts on biogeochemical processes of trace elements in subsurface or near surface environments. The...

  3. Proterozoic ocean redox and biogeochemical stasis

    PubMed Central

    Reinhard, Christopher T.; Planavsky, Noah J.; Robbins, Leslie J.; Partin, Camille A.; Gill, Benjamin C.; Lalonde, Stefan V.; Bekker, Andrey; Konhauser, Kurt O.; Lyons, Timothy W.

    2013-01-01

    The partial pressure of oxygen in Earth’s atmosphere has increased dramatically through time, and this increase is thought to have occurred in two rapid steps at both ends of the Proterozoic Eon (∼2.5–0.543 Ga). However, the trajectory and mechanisms of Earth’s oxygenation are still poorly constrained, and little is known regarding attendant changes in ocean ventilation and seafloor redox. We have a particularly poor understanding of ocean chemistry during the mid-Proterozoic (∼1.8–0.8 Ga). Given the coupling between redox-sensitive trace element cycles and planktonic productivity, various models for mid-Proterozoic ocean chemistry imply different effects on the biogeochemical cycling of major and trace nutrients, with potential ecological constraints on emerging eukaryotic life. Here, we exploit the differing redox behavior of molybdenum and chromium to provide constraints on seafloor redox evolution by coupling a large database of sedimentary metal enrichments to a mass balance model that includes spatially variant metal burial rates. We find that the metal enrichment record implies a Proterozoic deep ocean characterized by pervasive anoxia relative to the Phanerozoic (at least ∼30–40% of modern seafloor area) but a relatively small extent of euxinic (anoxic and sulfidic) seafloor (less than ∼1–10% of modern seafloor area). Our model suggests that the oceanic Mo reservoir is extremely sensitive to perturbations in the extent of sulfidic seafloor and that the record of Mo and chromium enrichments through time is consistent with the possibility of a Mo–N colimited marine biosphere during many periods of Earth’s history. PMID:23515332

  4. Proterozoic ocean redox and biogeochemical stasis.

    PubMed

    Reinhard, Christopher T; Planavsky, Noah J; Robbins, Leslie J; Partin, Camille A; Gill, Benjamin C; Lalonde, Stefan V; Bekker, Andrey; Konhauser, Kurt O; Lyons, Timothy W

    2013-04-01

    The partial pressure of oxygen in Earth's atmosphere has increased dramatically through time, and this increase is thought to have occurred in two rapid steps at both ends of the Proterozoic Eon (∼2.5-0.543 Ga). However, the trajectory and mechanisms of Earth's oxygenation are still poorly constrained, and little is known regarding attendant changes in ocean ventilation and seafloor redox. We have a particularly poor understanding of ocean chemistry during the mid-Proterozoic (∼1.8-0.8 Ga). Given the coupling between redox-sensitive trace element cycles and planktonic productivity, various models for mid-Proterozoic ocean chemistry imply different effects on the biogeochemical cycling of major and trace nutrients, with potential ecological constraints on emerging eukaryotic life. Here, we exploit the differing redox behavior of molybdenum and chromium to provide constraints on seafloor redox evolution by coupling a large database of sedimentary metal enrichments to a mass balance model that includes spatially variant metal burial rates. We find that the metal enrichment record implies a Proterozoic deep ocean characterized by pervasive anoxia relative to the Phanerozoic (at least ∼30-40% of modern seafloor area) but a relatively small extent of euxinic (anoxic and sulfidic) seafloor (less than ∼1-10% of modern seafloor area). Our model suggests that the oceanic Mo reservoir is extremely sensitive to perturbations in the extent of sulfidic seafloor and that the record of Mo and chromium enrichments through time is consistent with the possibility of a Mo-N colimited marine biosphere during many periods of Earth's history.

  5. Estimating biogeochemical fluxes across sagebrush-steppe landscapes with Thematic Mapper imagery

    NASA Technical Reports Server (NTRS)

    Reiners, W. A.; Strong, L. L.; Matson, P. A.; Burke, I. C.; Ojima, D. S.

    1989-01-01

    Thematic Mapper (TM) satellite data were coupled to an ecosystem simulation model to simulate variation in nitrogen mineralization over time and space in a sagebrush steppe. This system of data inputs and calculations provides estimates of ecosystem properties including rates of biogeochemical processes over extensive and complex landscapes, and under changing management and climatic conditions. The landscape surface was divided into three sagebrush ecosystem types plus one other class consisting of nonsagebrush vegetation. This classification presented a complex mosaic of ecosystem types that shifted markedly in composition from one end of the 933-sq km study area to the other. Annual N-mineralization rates ranged from 5 to 25 kg N/ha among the three sagebrush types. The most active type comprised 42 percent of the entire area but contributed 60 percent to the nitrogen mineralization throughout the landscape.

  6. Panel report on coupled thermo-mechanical-hydro-chemical processes associated with a nuclear waste repository

    SciTech Connect

    Tsang, C.F.; Mangold, D.C.

    1984-07-01

    Four basic physical processes, thermal, hydrological, mechanical and chemical, are likely to occur in 11 different types of coupling during the service life of an underground nuclear waste repository. A great number of coupled processes with various degrees of importance for geological repositories were identified and arranged into these 11 types. A qualitative description of these processes and a tentative evaluation of their significance and the degree of uncertainty in prediction is given. Suggestions for methods of investigation generally include, besides theoretical work, laboratory and large scale field testing. Great efforts of a multidisciplinary nature are needed to elucidate details of several coupled processes under different temperature conditions in different geological formations. It was suggested that by limiting the maximum temperature to 100{sup 0}C in the backfill and in the host rock during the whole service life of the repository the uncertainties in prediction of long-term repository behavior might be considerably reduced.

  7. Generalizability of Gottman and Colleagues' Affective Process Models Of Couples' Relationship Outcomes

    ERIC Educational Resources Information Center

    Kim, Hyoun K.; Capaldi, Deborah M.; Crosby, Lynn

    2007-01-01

    The generalizability of the affective process models of J. M. Gottman et al. (1998) was examined using a community-based sample of 85 married or cohabiting couples with at-risk backgrounds. Predictive associations between affective processes assessed at about age 21 years and relationship status and satisfaction assessed approximately 2.5 years…

  8. Coupled finite element simulation and optimization of single- and multi-stage sheet-forming processes

    NASA Astrophysics Data System (ADS)

    Tamasco, Cynthia M.; Rais-Rohani, Masoud; Buijk, Arjaan

    2013-03-01

    This article presents the development and application of a coupled finite element simulation and optimization framework that can be used for design and analysis of sheet-forming processes of varying complexity. The entire forming process from blank gripping and deep drawing to tool release and springback is modelled. The dies, holders, punch and workpiece are modelled with friction, temperature, holder force and punch speed controlled in the process simulation. Both single- and multi-stage sheet-forming processes are investigated. Process simulation is coupled with a nonlinear gradient-based optimization approach for optimizing single or multiple design objectives with imposed sheet-forming response constraints. A MATLAB program is developed and used for data-flow management between process simulation and optimization codes. Thinning, springback, damage and forming limit diagram are used to define failure in the forming process design optimization. Design sensitivity analysis and optimization results of the example problems are presented and discussed.

  9. Atmospheric-induced variability of hydrological and biogeochemical signatures in the NW Alboran Sea. Consequences for the spawning and nursery habitats of European anchovy

    NASA Astrophysics Data System (ADS)

    Macías, D.; Catalán, I. A.; Solé, J.; Morales-Nin, B.; Ruiz, J.

    2011-12-01

    The north-western Alboran Sea is a highly dynamic region in which the hydrological processes are mainly controlled by the entrance of the Atlantic Jet (AJ) through the Strait of Gibraltar. The biological patterns of the area are also related to this variability in which atmospheric pressure distributions and wind intensity and direction play major roles. In this work, we studied how changes in atmospheric forcing (from high atmospheric pressure over the Mediterranean to low atmospheric pressure) induced alterations in the physical and biogeochemical environment by re-activating coastal upwelling on the Spanish shore. The nursery area of European anchovy ( Engraulis encrasicolus) in the NW Alboran Sea, confirmed to be the very coastal band around Malaga Bay, did not show any drastic change in its biogeochemical characteristics, indicating that this coastal region is somewhat isolated from the rest of the basin. Our data also suggests that anchovy distribution is tightly coupled to the presence of microzooplankton rather than mesozooplankton. Finally, we use detailed physical and biological information to evaluate a hydrological-biogeochemical coupled model with a specific hydrological configuration to represent the Alboran basin. This model is able to reproduce the general circulation patterns in the region forced by the AJ movements only including two variable external forcings; atmospheric pressure over the western Mediterranean and realistic wind fields.

  10. Progress Towards Coupled Simulation of Surface/Subsurface Hydrologic Processes and Terrestrial Ecosystem Dynamics Using the Community Models PFLOTRAN and CLM

    NASA Astrophysics Data System (ADS)

    Mills, R. T.; Bisht, G.; Karra, S.; Hoffman, F. M.; Hammond, G. E.; Kumar, J.; Painter, S.; Thornton, P. E.; Lichtner, P. C.

    2012-12-01

    in how the governing equations are solved, and we will compare different surface flow formulations as well as coupling strategies between the surface and subsurface domains. Additionally, for studies of hydrology in Arctic regions, we have added a three-phase ice model. We will present some demonstrations of this capability and discuss solver strategies for handling the strong nonlinearities that arise. To provide a unified treatment of the unsaturated and saturated zones and to enable lateral redistribution of soil moisture (and eventually surface water, heat, and nutrients) in regional climate models, we have developed an approach for coupling PFLOTRAN with CLM. CLM is the global land model component used within the Community Earth System Model (CESM) to simulate an extensive set of biogeophysical and biogeochemical processes occurring at or near the terrestrial surface. We will describe our approach for replacing the existing CLM hydrology using PFLOTRAN and present some preliminary simulations undertaken with the CLM-PFLOTRAN coupled model.

  11. Flexible simulation framework to couple processes in complex 3D models for subsurface utilization assessment

    NASA Astrophysics Data System (ADS)

    Kempka, Thomas; Nakaten, Benjamin; De Lucia, Marco; Nakaten, Natalie; Otto, Christopher; Pohl, Maik; Tillner, Elena; Kühn, Michael

    2016-04-01

    Utilization of the geological subsurface for production and storage of hydrocarbons, chemical energy and heat as well as for waste disposal requires the quantification and mitigation of environmental impacts as well as the improvement of georesources utilization in terms of efficiency and sustainability. The development of tools for coupled process simulations is essential to tackle these challenges, since reliable assessments are only feasible by integrative numerical computations. Coupled processes at reservoir to regional scale determine the behaviour of reservoirs, faults and caprocks, generally demanding for complex 3D geological models to be considered besides available monitoring and experimenting data in coupled numerical simulations. We have been developing a flexible numerical simulation framework that provides efficient workflows for integrating the required data and software packages to carry out coupled process simulations considering, e.g., multiphase fluid flow, geomechanics, geochemistry and heat. Simulation results are stored in structured data formats to allow for an integrated 3D visualization and result interpretation as well as data archiving and its provision to collaborators. The main benefits in using the flexible simulation framework are the integration of data geological and grid data from any third party software package as well as data export to generic 3D visualization tools and archiving formats. The coupling of the required process simulators in time and space is feasible, while different spatial dimensions in the coupled simulations can be integrated, e.g., 0D batch with 3D dynamic simulations. User interaction is established via high-level programming languages, while computational efficiency is achieved by using low-level programming languages. We present three case studies on the assessment of geological subsurface utilization based on different process coupling approaches and numerical simulations.

  12. The global troposphere - Biogeochemical cycles, chemistry, and remote sensing

    NASA Technical Reports Server (NTRS)

    Levine, J. S.; Allario, F.

    1982-01-01

    The chemical composition of the troposphere is controlled by various biogeochemical cycles that couple the atmosphere with the oceans, the solid earth and the biosphere, and by atmospheric photochemical/chemical reactions. These cycles and reactions are discussed and a number of key questions concerning tropospheric composition and chemistry for the carbon, nitrogen, oxygen and sulfur species are identified. Next, various remote sensing techniques and instruments capable of measuring and monitoring tropospheric species from the ground, aircraft and space to address some of these key questions are reviewed. Future thrusts in remote sensing of the troposphere are also considered.

  13. Characterization of terrestrial ecosystems for biogeochemical studies using remote sensing

    NASA Technical Reports Server (NTRS)

    Peterson, D. L.; Mouat, D. A.; Running, S.

    1983-01-01

    Work is in progress to estimate leaf area index (LAI) of temperate closed canopy coniferous forests using transects in Oregon and California. This variable will be measured using remote sensing techniques including correlations of ground dimensional analysis with linear waveband combinations. LAI will be related to important biological variables such as net primary productivity, biomass, and biogenic gas emission fluxes. The spatial variation in LAI, when coupled with species composition, will be used in part to describe the spatial variation and temporal dynamics of biogeochemical cycling.

  14. Incorporating microbes into large-scale biogeochemical models

    NASA Astrophysics Data System (ADS)

    Allison, S. D.; Martiny, J. B.

    2008-12-01

    Micro-organisms, including Bacteria, Archaea, and Fungi, control major processes throughout the Earth system. Recent advances in microbial ecology and microbiology have revealed an astounding level of genetic and metabolic diversity in microbial communities. However, a framework for interpreting the meaning of this diversity has lagged behind the initial discoveries. Microbial communities have yet to be included explicitly in any major biogeochemical models in terrestrial ecosystems, and have only recently broken into ocean models. Although simplification of microbial communities is essential in complex systems, omission of community parameters may seriously compromise model predictions of biogeochemical processes. Two key questions arise from this tradeoff: 1) When and where must microbial community parameters be included in biogeochemical models? 2) If microbial communities are important, how should they be simplified, aggregated, and parameterized in models? To address these questions, we conducted a meta-analysis to determine if microbial communities are sensitive to four environmental disturbances that are associated with global change. In all cases, we found that community composition changed significantly following disturbance. However, the implications for ecosystem function were unclear in most of the published studies. Therefore, we developed a simple model framework to illustrate the situations in which microbial community changes would affect rates of biogeochemical processes. We found that these scenarios could be quite common, but powerful predictive models cannot be developed without much more information on the functions and disturbance responses of microbial taxa. Small-scale models that explicitly incorporate microbial communities also suggest that process rates strongly depend on microbial interactions and disturbance responses. The challenge is to scale up these models to make predictions at the ecosystem and global scales based on measurable

  15. Benchmark initiative on coupled multiphase flow and geomechanical processes during CO2 injection

    NASA Astrophysics Data System (ADS)

    Benisch, K.; Annewandter, R.; Olden, P.; Mackay, E.; Bauer, S.; Geiger, S.

    2012-12-01

    CO2 injection into deep saline aquifers involves multiple strongly interacting processes such as multiphase flow and geomechanical deformation, which threat to the seal integrity of CO2 repositories. Coupled simulation codes are required to establish realistic prognoses of the coupled process during CO2 injection operations. International benchmark initiatives help to evaluate, to compare and to validate coupled simulation results. However, there is no published code comparison study so far focusing on the impact of coupled multiphase flow and geomechanics on the long-term integrity of repositories, which is required to obtain confidence in the predictive capabilities of reservoir simulators. We address this gap by proposing a benchmark study. A wide participation from academic and industrial institutions is sought, as the aim of building confidence in coupled simulators become more plausible with many participants. Most published benchmark studies on coupled multiphase flow and geomechanical processes have been performed within the field of nuclear waste disposal (e.g. the DECOVALEX project), using single-phase formulation only. As regards CO2 injection scenarios, international benchmark studies have been published comparing isothermal and non-isothermal multiphase flow processes such as the code intercomparison by LBNL, the Stuttgart Benchmark study, the CLEAN benchmark approach and other initiatives. Recently, several codes have been developed or extended to simulate the coupling of hydraulic and geomechanical processes (OpenGeoSys, ELIPSE-Visage, GEM, DuMuX and others), which now enables a comprehensive code comparison. We propose four benchmark tests of increasing complexity, addressing the coupling between multiphase flow and geomechanical processes during CO2 injection. In the first case, a horizontal non-faulted 2D model consisting of one reservoir and one cap rock is considered, focusing on stress and strain regime changes in the storage formation and the

  16. Coupled processes in single fractures, double fractures and fractured porous media

    SciTech Connect

    Tsang, C.F.

    1986-12-01

    The emplacement of a nuclear waste repository in a fractured porous medium provides a heat source of large dimensions over an extended period of time. It also creates a large cavity in the rock mass, changing significantly the stress field. Such major changes induce various coupled thermohydraulic, hydromechanic and hydrochemical transport processes in the environment around a nuclear waste repository. The present paper gives, first, a general overview of the coupled processes involving thermal, mechanical, hydrological and chemical effects. Then investigations of a number of specific coupled processes are described in the context of fluid flow and transport in a single fracture, two intersecting fractures and a fractured porous medium near a nuclear waste repository. The results are presented and discussed.

  17. Multi-field coupled numerical simulation of hot reversible rolling process of GCr15 steel rod

    NASA Astrophysics Data System (ADS)

    Gu, Sendong; Zhang, Liwen; Ruan, Jinhua; Mei, Hongyu; Zhen, Yu; Shi, Xinhua

    2013-05-01

    In this paper, based on rolling technology of hot reversible rolling mill, a multi-filed coupled finite element (FE) model of hot reversible rolling process of large dimension cross-section GCr15 steel rod is established. Thermal, mechanical and microstructural phenomena during the rolling process are coupled in the model. By employing grain growth experiment, double and single hit hot compression experiments, the austenite grain size growth mathematical model and recrystallization behavior mathematical models are determined. And a designed subprogram is coupled in the FE model. Actual hot reversible rolling process of GCr15 steel is simulated using the model and the distribution and evolution of different filed-variables, such as temperature, effective strain and austenite grain size are obtained. To verify the model predictions, hot rolling experiments are carried out and the temperature and microstructure of the rolling metal are compared with the predicted results. The comparison between the two sets of data shows a good agreement.

  18. Atmosphere-ocean coupled processes in the Madden-Julian oscillation

    NASA Astrophysics Data System (ADS)

    DeMott, Charlotte A.; Klingaman, Nicholas P.; Woolnough, Steven J.

    2015-12-01

    The Madden-Julian oscillation (MJO) is a convectively coupled 30-70 day (intraseasonal) tropical atmospheric mode that drives variations in global weather but which is poorly simulated in most atmospheric general circulation models. Over the past two decades, field campaigns and modeling experiments have suggested that tropical atmosphere-ocean interactions may sustain or amplify the pattern of enhanced and suppressed atmospheric convection that defines the MJO and encourage its eastward propagation through the Indian and Pacific Oceans. New observations collected during the past decade have advanced our understanding of the ocean response to atmospheric MJO forcing and the resulting intraseasonal sea surface temperature fluctuations. Numerous modeling studies have revealed a considerable impact of the mean state on MJO ocean-atmosphere coupled processes, as well as the importance of resolving the diurnal cycle of atmosphere-upper ocean interactions. New diagnostic methods provide insight to atmospheric variability and physical processes associated with the MJO but offer limited insight on the role of ocean feedbacks. Consequently, uncertainty remains concerning the role of the ocean in MJO theory. Our understanding of how atmosphere-ocean coupled processes affect the MJO can be improved by collecting observations in poorly sampled regions of MJO activity, assessing oceanic and atmospheric drivers of surface fluxes, improving the representation of upper ocean mixing in coupled model simulations, designing model experiments that minimize mean state differences, and developing diagnostic tools to evaluate the nature and role of coupled ocean-atmosphere processes over the MJO cycle.

  19. A generic reaction-based biogeochemical simulator

    SciTech Connect

    Fang, Yilin; Yabusaki, Steven B.; Yeh, Gour T.; C.T. Miller, M.W. Farthing, W.G. Gray, and G.F. Pinder

    2004-06-17

    This paper presents a generic biogeochemical simulator, BIOGEOCHEM. The simulator can read a thermodynamic database based on the EQ3/EQ6 database. It can also read user-specified equilibrium and kinetic reactions (reactions not defined in the format of that in EQ3/EQ6 database) symbolically. BIOGEOCHEM is developed with a general paradigm. It overcomes the requirement in most available reaction-based models that reactions and rate laws be specified in a limited number of canonical forms. The simulator interprets the reactions, and rate laws of virtually any type for input to the MAPLE symbolic mathematical software package. MAPLE then generates Fortran code for the analytical Jacobian matrix used in the Newton-Raphson technique, which are compiled and linked into the BIOGEOCHEM executable. With this feature, the users are exempted from recoding the simulator to accept new equilibrium expressions or kinetic rate laws. Two examples are used to demonstrate the new features of the simulator.

  20. Negotiating couplehood: the process of resolving the December dilemma among interfaith couples.

    PubMed

    Horowitz, J A

    1999-01-01

    Christmas forces interfaith couples to address questions concerning holiday observances. The purpose of this investigation was to explore the experience of the "December dilemma," that is, the experience of Christmas and Hanukah among couples in which one partner is Jewish. A qualitative design based on the continuous comparison method of Grounded Theory analysis was used. Participants were solicited through interfaith couples' programs, referral, and snowballing. Unstructured interactive interviews of 22 couples were audiotaped, transcribed, and analyzed. The categories generated were: Ghosts of Christmas and Hanukah Past, Coming Together, and Holiday Observances as a Couple. The basic problem facing these couples was how to bridge religious backgrounds with differing holiday traditions in a way that integrated respect for each partner's needs, heritage, and identity. The basic social process of negotiating "couplehood," that is, moving from individuality to partnership emerged when mutual agreement could be reached to solve problems about how to celebrate the December holidays. The data indicated that exploration of the ways these couples managed the dilemmas created by the December holidays provided a window to how they negotiated other challenges in their relationships.

  1. Differences in Pornography Use Among Couples: Associations with Satisfaction, Stability, and Relationship Processes.

    PubMed

    Willoughby, Brian J; Carroll, Jason S; Busby, Dean M; Brown, Cameron C

    2016-01-01

    The present study utilized a sample of 1755 adult couples in heterosexual romantic relationships to examine how different patterns of pornography use between romantic partners may be associated with relationship outcomes. While pornography use has been generally associated with some negative and some positive couple outcomes, no study has yet explored how differences between partners may uniquely be associated with relationship well-being. Results suggested that greater discrepancies between partners in pornography use were related to less relationship satisfaction, less stability, less positive communication, and more relational aggression. Mediation analyses suggested that greater pornography use discrepancies were primarily associated with elevated levels of male relational aggression, lower female sexual desire, and less positive communication for both partners which then predicted lower relational satisfaction and stability for both partners. Results generally suggest that discrepancies in pornography use at the couple level are related to negative couple outcomes. Specifically, pornography differences may alter specific couple interaction processes which, in turn, may influence relationship satisfaction and stability. Implications for scholars and clinicians interested in how pornography use is associated with couple process are discussed.

  2. Differences in Pornography Use Among Couples: Associations with Satisfaction, Stability, and Relationship Processes.

    PubMed

    Willoughby, Brian J; Carroll, Jason S; Busby, Dean M; Brown, Cameron C

    2016-01-01

    The present study utilized a sample of 1755 adult couples in heterosexual romantic relationships to examine how different patterns of pornography use between romantic partners may be associated with relationship outcomes. While pornography use has been generally associated with some negative and some positive couple outcomes, no study has yet explored how differences between partners may uniquely be associated with relationship well-being. Results suggested that greater discrepancies between partners in pornography use were related to less relationship satisfaction, less stability, less positive communication, and more relational aggression. Mediation analyses suggested that greater pornography use discrepancies were primarily associated with elevated levels of male relational aggression, lower female sexual desire, and less positive communication for both partners which then predicted lower relational satisfaction and stability for both partners. Results generally suggest that discrepancies in pornography use at the couple level are related to negative couple outcomes. Specifically, pornography differences may alter specific couple interaction processes which, in turn, may influence relationship satisfaction and stability. Implications for scholars and clinicians interested in how pornography use is associated with couple process are discussed. PMID:26228990

  3. Modeling Coupled THM Processes and Brine Migration in Salt at High Temperatures

    SciTech Connect

    Rutqvist, Jonny; Blanco-Martin, Laura; Molins, Sergi; Trebotich, David; Birkholzer, Jens

    2015-09-01

    In this report, we present FY2015 progress by Lawrence Berkeley National Laboratory (LBNL) related to modeling of coupled thermal-hydrological-mechanical-chemical (THMC) processes in salt and their effect on brine migration at high temperatures. This is a combined milestone report related to milestone Salt R&D Milestone “Modeling Coupled THM Processes and Brine Migration in Salt at High Temperatures” (M3FT-15LB0818012) and the Salt Field Testing Milestone (M3FT-15LB0819022) to support the overall objectives of the salt field test planning.

  4. The Southern Ocean biogeochemical divide

    NASA Astrophysics Data System (ADS)

    Marinov, I.; Gnanadesikan, A.; Toggweiler, J. R.; Sarmiento, J. L.

    2006-06-01

    Modelling studies have demonstrated that the nutrient and carbon cycles in the Southern Ocean play a central role in setting the air-sea balance of CO2 and global biological production. Box model studies first pointed out that an increase in nutrient utilization in the high latitudes results in a strong decrease in the atmospheric carbon dioxide partial pressure (pCO2). This early research led to two important ideas: high latitude regions are more important in determining atmospheric pCO2 than low latitudes, despite their much smaller area, and nutrient utilization and atmospheric pCO2 are tightly linked. Subsequent general circulation model simulations show that the Southern Ocean is the most important high latitude region in controlling pre-industrial atmospheric CO2 because it serves as a lid to a larger volume of the deep ocean. Other studies point out the crucial role of the Southern Ocean in the uptake and storage of anthropogenic carbon dioxide and in controlling global biological production. Here we probe the system to determine whether certain regions of the Southern Ocean are more critical than others for air-sea CO2 balance and the biological export production, by increasing surface nutrient drawdown in an ocean general circulation model. We demonstrate that atmospheric CO2 and global biological export production are controlled by different regions of the Southern Ocean. The air-sea balance of carbon dioxide is controlled mainly by the biological pump and circulation in the Antarctic deep-water formation region, whereas global export production is controlled mainly by the biological pump and circulation in the Subantarctic intermediate and mode water formation region. The existence of this biogeochemical divide separating the Antarctic from the Subantarctic suggests that it may be possible for climate change or human intervention to modify one of these without greatly altering the other.

  5. The Southern Ocean biogeochemical divide.

    PubMed

    Marinov, I; Gnanadesikan, A; Toggweiler, J R; Sarmiento, J L

    2006-06-22

    Modelling studies have demonstrated that the nutrient and carbon cycles in the Southern Ocean play a central role in setting the air-sea balance of CO(2) and global biological production. Box model studies first pointed out that an increase in nutrient utilization in the high latitudes results in a strong decrease in the atmospheric carbon dioxide partial pressure (pCO2). This early research led to two important ideas: high latitude regions are more important in determining atmospheric pCO2 than low latitudes, despite their much smaller area, and nutrient utilization and atmospheric pCO2 are tightly linked. Subsequent general circulation model simulations show that the Southern Ocean is the most important high latitude region in controlling pre-industrial atmospheric CO(2) because it serves as a lid to a larger volume of the deep ocean. Other studies point out the crucial role of the Southern Ocean in the uptake and storage of anthropogenic carbon dioxide and in controlling global biological production. Here we probe the system to determine whether certain regions of the Southern Ocean are more critical than others for air-sea CO(2) balance and the biological export production, by increasing surface nutrient drawdown in an ocean general circulation model. We demonstrate that atmospheric CO(2) and global biological export production are controlled by different regions of the Southern Ocean. The air-sea balance of carbon dioxide is controlled mainly by the biological pump and circulation in the Antarctic deep-water formation region, whereas global export production is controlled mainly by the biological pump and circulation in the Subantarctic intermediate and mode water formation region. The existence of this biogeochemical divide separating the Antarctic from the Subantarctic suggests that it may be possible for climate change or human intervention to modify one of these without greatly altering the other.

  6. Coupling pre-mRNA processing to transcription on the RNA factory assembly line

    PubMed Central

    Lee, Kuo-Ming; Tarn, Woan-Yuh

    2013-01-01

    It has been well-documented that nuclear processing of primary transcripts of RNA polymerase II occurs co-transcriptionally and is functionally coupled to transcription. Moreover, increasing evidence indicates that transcription influences pre-mRNA splicing and even several post-splicing RNA processing events. In this review, we discuss the issues of how RNA polymerase II modulates co-transcriptional RNA processing events via its carboxyl terminal domain, and the protein domains involved in coupling of transcription and RNA processing events. In addition, we describe how transcription influences the expression or stability of mRNAs through the formation of distinct mRNP complexes. Finally, we delineate emerging findings that chromatin modifications function in the regulation of RNA processing steps, especially splicing, in addition to transcription. Overall, we provide a comprehensive view that transcription could integrate different control systems, from epigenetic to post-transcriptional control, for efficient gene expression. PMID:23392244

  7. Linking Tectonics and Surface Processes through SNAC-CHILD Coupling: Preliminary Results Towards Interoperable Modeling Frameworks

    NASA Astrophysics Data System (ADS)

    Choi, E.; Kelbert, A.; Peckham, S. D.

    2014-12-01

    We demonstrate that code coupling can be an efficient and flexible method for modeling complicated two-way interactions between tectonic and surface processes with SNAC-CHILD coupling as an example. SNAC is a deep earth process model (a geodynamic/tectonics model), built upon a scientific software framework called StGermain and also compatible with a model coupling framework called Pyre. CHILD is a popular surface process model (a landscape evolution model), interfaced to the CSDMS (Community Surface Dynamics Modeling System) modeling framework. We first present proof-of-concept but non-trivial results from a simplistic coupling scheme. We then report progress towards augmenting SNAC with a Basic Model Interface (BMI), a framework-agnostic standard interface developed by CSDMS that uses the CSDMS Standard Names as controlled vocabulary for model communication across domains. Newly interfaced to BMI, SNAC will be easily coupled with CHILD as well as other BMI-compatible models. In broader context, this work will test BMI as a general and easy-to-implement mechanism for sharing models between modeling frameworks and is a part of the NSF-funded EarthCube Building Blocks project, "Earth System Bridge: Spanning Scientific Communities with Interoperable Modeling Frameworks."

  8. A Coupled Modeling Approach for Root-Soil Interaction Processes Using DuMuX

    NASA Astrophysics Data System (ADS)

    Schröder, N.; Helmig, R.; Flemisch, B.; Koch, T.

    2015-12-01

    The water and nutrient uptake of plant roots in soils have a crucial influence on soil physical processes. The interacting processes between plant roots and soil are important for several agricultural problems, for example water management or leaching of pesticides. However, the coupled mechanisms of local soil and root water flow, transport of dissolved substances, root growth, and root uptake are difficult to measure and thus experimental data are rare. Numerical models can be used to understand these complex soil-root systems and help to analyze and interpret experimental measurements. The model approach presented here couples a root system and a soil model. Crucial for this approach is the 1D-3D grid coupling which combines a 1D network grid (root system) with the 3D soil grid. Based on that grid coupling, local processes are defined, for instance the local water uptake of a single root segment. Here, the interface conditions between roots and soil play a major role and we use local grid refinement strategies to better resolve these interface processes. This grid refinement of the 3D soil grid is based on the root network (1D grid) and adapts if root growth occurs. It offers the possibility to describe processes in the soil-plant continuum in a more physical manner avoiding empirical descriptions of root water uptake as a function of bulk matric potential, osmotic potential, root length density, and transpiration rate. Our coupling approach is included into the framework of DuMux, an open-source simulator for flow and transport processes in porous media. This implementation combines biological, chemical and physical processes in soil, inside roots, and at root-soil interfaces, and is contained in a sustainable and consistent framework for the implementation. We will show example simulations describing water flow, solute transport and root growth in a soil-root system.

  9. The Microbial Engines That Drive Earth’s Biogeochemical Cycles

    NASA Astrophysics Data System (ADS)

    Falkowski, Paul G.; Fenchel, Tom; Delong, Edward F.

    2008-05-01

    Virtually all nonequilibrium electron transfers on Earth are driven by a set of nanobiological machines composed largely of multimeric protein complexes associated with a small number of prosthetic groups. These machines evolved exclusively in microbes early in our planet’s history yet, despite their antiquity, are highly conserved. Hence, although there is enormous genetic diversity in nature, there remains a relatively stable set of core genes coding for the major redox reactions essential for life and biogeochemical cycles. These genes created and coevolved with biogeochemical cycles and were passed from microbe to microbe primarily by horizontal gene transfer. A major challenge in the coming decades is to understand how these machines evolved, how they work, and the processes that control their activity on both molecular and planetary scales.

  10. The microbial engines that drive Earth's biogeochemical cycles.

    PubMed

    Falkowski, Paul G; Fenchel, Tom; Delong, Edward F

    2008-05-23

    Virtually all nonequilibrium electron transfers on Earth are driven by a set of nanobiological machines composed largely of multimeric protein complexes associated with a small number of prosthetic groups. These machines evolved exclusively in microbes early in our planet's history yet, despite their antiquity, are highly conserved. Hence, although there is enormous genetic diversity in nature, there remains a relatively stable set of core genes coding for the major redox reactions essential for life and biogeochemical cycles. These genes created and coevolved with biogeochemical cycles and were passed from microbe to microbe primarily by horizontal gene transfer. A major challenge in the coming decades is to understand how these machines evolved, how they work, and the processes that control their activity on both molecular and planetary scales.

  11. Multi-Region Boundary Element Analysis for Coupled Thermal-Fracturing Processes in Geomaterials

    NASA Astrophysics Data System (ADS)

    Shen, Baotang; Kim, Hyung-Mok; Park, Eui-Seob; Kim, Taek-Kon; Wuttke, Manfred W.; Rinne, Mikael; Backers, Tobias; Stephansson, Ove

    2013-01-01

    This paper describes a boundary element code development on coupled thermal-mechanical processes of rock fracture propagation. The code development was based on the fracture mechanics code FRACOD that has previously been developed by Shen and Stephansson (Int J Eng Fracture Mech 47:177-189, 1993) and FRACOM (A fracture propagation code—FRACOD, User's manual. FRACOM Ltd. 2002) and simulates complex fracture propagation in rocks governed by both tensile and shear mechanisms. For the coupled thermal-fracturing analysis, an indirect boundary element method, namely the fictitious heat source method, was implemented in FRACOD to simulate the temperature change and thermal stresses in rocks. This indirect method is particularly suitable for the thermal-fracturing coupling in FRACOD where the displacement discontinuity method is used for mechanical simulation. The coupled code was also extended to simulate multiple region problems in which rock mass, concrete linings and insulation layers with different thermal and mechanical properties were present. Both verification and application cases were presented where a point heat source in a 2D infinite medium and a pilot LNG underground cavern were solved and studied using the coupled code. Good agreement was observed between the simulation results, analytical solutions and in situ measurements which validates an applicability of the developed coupled code.

  12. Childhood Emotional Abuse and Attachment Processes in the Dyadic Adjustment of Dating Couples

    ERIC Educational Resources Information Center

    Riggs, Shelley A.; Cusimano, Angela M.; Benson, Karen M.

    2011-01-01

    In an effort to improve understanding of the mechanisms that link early maltreatment to later outcomes, this study investigated the mediation effects of adult attachment processes on the association between childhood emotional abuse and later romantic relationships among heterosexual couples. College students and their dating partners (N = 310;…

  13. Multilevel Modeling of Two Cyclical Processes: Extending Differential Structural Equation Modeling to Nonlinear Coupled Systems

    ERIC Educational Resources Information Center

    Butner, Jonathan; Amazeen, Polemnia G.; Mulvey, Genna M.

    2005-01-01

    The authors present a dynamical multilevel model that captures changes over time in the bidirectional, potentially asymmetric influence of 2 cyclical processes. S. M. Boker and J. Graham's (1998) differential structural equation modeling approach was expanded to the case of a nonlinear coupled oscillator that is common in bimanual coordination…

  14. Novel Imaging Techniques, Integrated with Mineralogical, Geochemical and Microbiological Characterization to Determine the Biogeochemical Controls....

    SciTech Connect

    Lloyd, Jonathan R.

    2005-06-01

    Tc(VII) will be reduced and precipitated in FRC sediments under anaerobic conditions in batch experiments (progressive microcosms). The complementary microcosm experiments using low pH/nigh nitrate sediments from 3 (near FW 009) are imminent, with the sediment cores already shipped to Manchester. HYPOTHESIS 2. Tc(VII) reduction and precipitation can be visualized in discrete biogeochemical zones in sediment columns using 99mTc and a gamma-camera. Preliminary experiments testing the use of 99mTc as a radiotracer to address hypotheses 2 and 3 have suggested that the 99mTc associates with Fe(II)-bearing sediments in microcosms and stratified columns containing FRC sediments. Initial proof of concept microcosms containing Fe(II)-bearing, microbially-reduced FRC sediments were spiked with 99mTc and imaged using a gamma-camera. In comparison with oxic controls, 99mTc was significantly partitioned in the solid phase in Fe(III)-reducing sediments in batch experiments. Column experiments using FRC background area soil with stratified biogeochemical zones after stimulation of anaerobic processes through nutrient supplementation, suggested that 99mTc transport was retarded through areas of Fe(III) reduction. HYPOTHESIS 3. Sediment-bound reduced 99mTc can be solubilized by perturbations including oxidation coupled to biological nitrate reduction, and mobilization visualized in real-time using a gamma-camera. Significant progress has been made focusing on the impact of nitrate on the biogeochemical behavior of technetium. Additions of 100 mM nitrate to FRC sediment microcosms, which could potentially compete for electrons during metal reduction, inhibited the reduction of both Fe(III) and Tc(VII) completely. Experiments have also addressed the impact of high nitrate concentrations on Fe(II) and Tc(IV) in pre-reduced sediments, showing no significant resolubilization of Tc with the addition of 25 mM nitrate. A parallel set of experiments addressing the impact of aerobic

  15. Microbial activity and biogeochemical cycling in first-order Russian Arctic streams

    NASA Astrophysics Data System (ADS)

    Rhoades, R. E.; Lynch, L. M.; Ortega, J. C.; Holmes, R. M.; Mann, P. J.; Vonk, J. E.; Schade, J. D.

    2011-12-01

    Global climate change is strongly impacting Arctic ecosystems and is predicted to lead to thawing of permafrost soils. These soils are rich in organic matter and other nutrients and influence biogeochemical cycling in terrestrial and aquatic ecosystems. Small arctic streams are likely to be the first aquatic ecosystems to receive materials exported as soils warm. These first-order streams are characterized by strong interactions between the water column and stream bottom and have the potential to affect nutrient flux. Previous studies suggest that phosphorous availability limits biological productivity in many first-order arctic streams, however, they remain understudied, particularly in the Russian Arctic. Our objective was to assess microbial activity and biogeochemical cycling among arctic streams. We used three approaches to meet our objectives, including a survey of 9 streams, intensive longitudinal sampling in 5 streams, and nutrient pulse addition experiments in 4 streams, designed to assess the potential for limitation by N or P. We measured pH, temperature, dissolved oxygen, NH4, SRP, DOC, and TDN at all sampling sites. We also conducted biological oxygen demand (BOD) incubations designed to assess DOC lability, and correlated these measurements with background nutrient concentrations. We found a strong positive linear correlation between BOD and phosphate concentration, suggesting P limitation of production and/or consumption of labile DOC. To complement ambient stream measurements, we conducted whole stream nutrient addition experiments to calculate N and P uptake lengths, which we then used to infer whether N or P is more likely to limit biological processes, and the degree of coupling between N and P cycling. Results from the nutrient addition experiments suggest both N and P limitation among streams depending on stream location and characteristics. In addition, these experiments suggest a significant, but complex interaction between N and P cycles

  16. Abrupt shifts in ecosystem function and intensification of global biogeochemical cycle driven by hydroclimatic extremes

    NASA Astrophysics Data System (ADS)

    Ma, Xuanlong; Huete, Alfredo; Ponce-Campos, Guillermo; Zhang, Yongguang; Xie, Zunyi; Giovannini, Leandro; Cleverly, James; Eamus, Derek

    2016-04-01

    Amplification of the hydrologic cycle as a consequence of global warming is increasing the frequency, intensity, and spatial extent of extreme climate events globally. The potential influences resulting from amplification of the hydro-climatic cycle, coupled with an accelerating warming trend, pose great concerns on the sustainability of terrestrial ecosystems to sequester carbon, maintain biodiversity, provide ecosystem services, food security, and support human livelihood. Despite the great implications, the magnitude, direction, and carry-over effect of these extreme climate events on ecosystem function, remain largely uncertain. To address these pressing issues, we conducted an observational, interdisciplinary study using satellite retrievals of atmospheric CO2 and photosynthesis (chlorophyll fluorescence), and in-situ flux tower measures of ecosystem-atmosphere carbon exchange, to reveal the shifts in ecosystem function across extreme drought and wet periods. We further determine the factors that govern ecosystem sensitivity to hydroclimatic extremes. We focus on Australia but extended our analyses to other global dryland regions due to their significant role in global biogeochemical cycles. Our results revealed dramatic impacts of drought and wet hydroclimatic extremes on ecosystem function, with abrupt changes in vegetation productivity, carbon uptake, and water-use-efficiency between years. Drought resulted in widespread reductions or collapse in the normal patterns of vegetation growth seasonality such that in many cases there was no detectable phenological cycle during extreme drought years. We further identified a significant increasing trend (p < 0.001) in extreme wet year precipitation amounts over Australia and many other global regions, resulting in an increasing trend in magnitude of the episodic carbon sink pulses coupled to each La Niña-induced wet years. This finding is of global biogeochemical significance, with the consequence of amplifying

  17. Possible biogeochemical consequences of ocean fertilization

    SciTech Connect

    Fuhrman, J.A. ); Capone, D.G. )

    1991-12-01

    The authors consider biogeochemical secondary effects that could arise from an increase in ocean productivity, such as may occur via fertilization with Fe. These processes and feedback loops are infrequently discussed in this context, yet are likely to be highly relevant to the understanding of global change in general. In particular, the authors suggest that increased productivity may increase the production and efflux of greenhouse gases, such as nitrous oxide (N{sub 2}O) and methane (CH{sub 4}) and that shifts in phytoplankton species and productivity may cause changes in another climate-related gas, dimethylsulfide (DMS). N{sub 2}O is also implicated in the destruction of stratospheric ozone. Factors contributing to amplified release include both increased nutrient cycling in general and possible development of low oxygen conditions from fertilization. It is also remotely possible that reduced oxygen from an initial fertilization could mobilize existing Fe pools, inducing uncontrolled self-fertilization. Although lack of relevant physiological and ecological data makes it difficult to provide quantitative limits on the extent of the undesired effects, rough calculations suggest that the enhanced release of N{sub 2}O alone could totally negate any potential benefit from fertilization and likely worsen global warming and ozone depletion.

  18. Forming limits in the hole-flanging process by coupled and uncoupled damage models

    NASA Astrophysics Data System (ADS)

    Kacem, A.; Jégat, A.; Krichen, A.; Manach, P. Y.

    2013-12-01

    The aim of this work is to identify the limits of the hole-flanging process under different conditions. A 3D finite element model was developed to predict failure in hole-flanging process for sheet aluminium alloys. The Gurson-Tvergaard-Needleman (GTN) coupled damage model and the Bao-Wierzbicki (BW) uncoupled damage model were used. The parameters of both coupled and uncoupled models were identified by inverse analysis based on uniaxial tensile test. Experiments were conducted to analyse the types of failure that appear during the process. Numerical results were compared with experimental datas to check the validity of both models in predicting failure during the hole-flanging process. The comparative study showed that the GTN model predicts more accurately almost all types of failure while fracture occurrence can be only predicted by the BW model.

  19. Numerical methods for TVD transport and coupled relaxing processes in gases and plasmas

    NASA Technical Reports Server (NTRS)

    Cambier, Jean-Luc

    1990-01-01

    The construction of second-order upwind schemes for nonequilibrium plasmas, for both one- and two-fluid formulations is demonstrated. Coupled relaxation processes, including ionization kinetics and radiative processes and their algorithms for nonequilibrium, multiple temperature conditions are described as well. The paper applies the numerical techniques on some simple test cases, points out critical problems and their solutions, and makes qualitative comparisons with known results, whenever possible.

  20. Process research on Emotionally Focused Therapy (EFT) for couples: linking theory to practice.

    PubMed

    Greenman, Paul S; Johnson, Susan M

    2013-03-01

    The focus of this article is on the link among theory, process, and outcome in the practice of Emotionally Focused Therapy (EFT) for couples. We describe the EFT model of change and the EFT perspective on adult love as the reflection of underlying attachment processes. We outline the manner in which theory and research inform EFT interventions. This leads into a detailed review of the literature on the processes of change in EFT. We highlight the client responses and therapist operations that have emerged from process research and their relation to treatment outcomes. We discuss the implications of this body of research for clinical practice and training.

  1. Can neutron stars have auroras ? : electromagnetic coupling process between neutron star and magnetized accretion disk

    NASA Astrophysics Data System (ADS)

    Kimura, T.; Iwakiri, W. B.; Enoto, T.; Wada, T.; Tao, C.

    2015-12-01

    In the binary neutron star system, angular momentum transfer from accretion disk to a star is essential process for spin-up/down of stars. The angular momentum transfer has been well formulated for the accretion disk strongly magnetized by the neutron star [e.g., Ghosh and Lamb, 1978, 1979a, b]. However, the electromagnetic (EM) coupling between the neutron star and accretion disk has not been self-consistently solved in the previous studies although the magnetic field lines from the star are strongly tied with the accretion disk. In this study, we applied the planet-magnetosphere coupling process established for Jupiter [Hill, 1979] to the binary neutron star system. Angular momentum distribution is solved based on the torque balance between the neutron star's surface and accretion disk coupled by the magnetic field tensions. We found the EM coupling can transfer significantly larger fraction of the angular momentum from the magnetized accretion disk to the star than the unmagnetized case. The resultant spin-up rate is estimated to ~10^-14 [sec/sec] for the nominal binary system parameters, which is comparable with or larger than the other common spin-down/up processes: e.g., the magnetic dipole radiation spin-down. The Joule heating energy dissipated in the EM coupling is estimated to be up to ~10^36 [erg/sec] for the nominal binary system parameters. The release is comparable to that of gravitation energy directly caused by the matters accreting onto the neutron star. This suggests the EM coupling at the neutron star can accompany the observable radiation as auroras with a similar manner to those at the rotating planetary magnetospheres like Jupiter, Saturn, and other gas giants.

  2. Investigating the Impact of Pore Scale Microenvironments on Contaminant Biogeochemical Reactive Transport

    NASA Astrophysics Data System (ADS)

    Wilkins, M. J.; Pearce, C.; Zhang, C.; Heald, S.; Fredrickson, J. K.; Zachara, J. M.

    2011-12-01

    Microenvironments and transition zones dominate the subsurface biogeochemical cycling of key contaminants, with strong effects resulting from the