Digital Mapping of Soil Salinity and Crop Yield across a Coastal Agricultural Landscape Using Repeated Electromagnetic Induction (EMI) Surveys

PubMed Central

Yao, Rongjiang; Yang, Jingsong; Wu, Danhua; Xie, Wenping; Gao, Peng; Jin, Wenhui

2016-01-01

Reliable and real-time information on soil and crop properties is important for the development of management practices in accordance with the requirements of a specific soil and crop within individual field units. This is particularly the case in salt-affected agricultural landscape where managing the spatial variability of soil salinity is essential to minimize salinization and maximize crop output. The primary objectives were to use linear mixed-effects model for soil salinity and crop yield calibration with horizontal and vertical electromagnetic induction (EMI) measurements as ancillary data, to characterize the spatial distribution of soil salinity and crop yield and to verify the accuracy of spatial estimation. Horizontal and vertical EMI (type EM38) measurements at 252 locations were made during each survey, and root zone soil samples and crop samples at 64 sampling sites were collected. This work was periodically conducted on eight dates from June 2012 to May 2013 in a coastal salt-affected mud farmland. Multiple linear regression (MLR) and restricted maximum likelihood (REML) were applied to calibrate root zone soil salinity (ECe) and crop annual output (CAO) using ancillary data, and spatial distribution of soil ECe and CAO was generated using digital soil mapping (DSM) and the precision of spatial estimation was examined using the collected meteorological and groundwater data. Results indicated that a reduced model with EMh as a predictor was satisfactory for root zone ECe calibration, whereas a full model with both EMh and EMv as predictors met the requirement of CAO calibration. The obtained distribution maps of ECe showed consistency with those of EMI measurements at the corresponding time, and the spatial distribution of CAO generated from ancillary data showed agreement with that derived from raw crop data. Statistics of jackknifing procedure confirmed that the spatial estimation of ECe and CAO exhibited reliability and high accuracy. A general increasing trend of ECe was observed and moderately saline and very saline soils were predominant during the survey period. The temporal dynamics of root zone ECe coincided with those of daily rainfall, water table and groundwater data. Long-range EMI surveys and data collection are needed to capture the spatial and temporal variability of soil and crop parameters. Such results allowed us to conclude that, cost-effective and efficient EMI surveys, as one part of multi-source data for DSM, could be successfully used to characterize the spatial variability of soil salinity, to monitor the spatial and temporal dynamics of soil salinity, and to spatially estimate potential crop yield. PMID:27203697

Digital Mapping of Soil Salinity and Crop Yield across a Coastal Agricultural Landscape Using Repeated Electromagnetic Induction (EMI) Surveys.

PubMed

Yao, Rongjiang; Yang, Jingsong; Wu, Danhua; Xie, Wenping; Gao, Peng; Jin, Wenhui

2016-01-01

Reliable and real-time information on soil and crop properties is important for the development of management practices in accordance with the requirements of a specific soil and crop within individual field units. This is particularly the case in salt-affected agricultural landscape where managing the spatial variability of soil salinity is essential to minimize salinization and maximize crop output. The primary objectives were to use linear mixed-effects model for soil salinity and crop yield calibration with horizontal and vertical electromagnetic induction (EMI) measurements as ancillary data, to characterize the spatial distribution of soil salinity and crop yield and to verify the accuracy of spatial estimation. Horizontal and vertical EMI (type EM38) measurements at 252 locations were made during each survey, and root zone soil samples and crop samples at 64 sampling sites were collected. This work was periodically conducted on eight dates from June 2012 to May 2013 in a coastal salt-affected mud farmland. Multiple linear regression (MLR) and restricted maximum likelihood (REML) were applied to calibrate root zone soil salinity (ECe) and crop annual output (CAO) using ancillary data, and spatial distribution of soil ECe and CAO was generated using digital soil mapping (DSM) and the precision of spatial estimation was examined using the collected meteorological and groundwater data. Results indicated that a reduced model with EMh as a predictor was satisfactory for root zone ECe calibration, whereas a full model with both EMh and EMv as predictors met the requirement of CAO calibration. The obtained distribution maps of ECe showed consistency with those of EMI measurements at the corresponding time, and the spatial distribution of CAO generated from ancillary data showed agreement with that derived from raw crop data. Statistics of jackknifing procedure confirmed that the spatial estimation of ECe and CAO exhibited reliability and high accuracy. A general increasing trend of ECe was observed and moderately saline and very saline soils were predominant during the survey period. The temporal dynamics of root zone ECe coincided with those of daily rainfall, water table and groundwater data. Long-range EMI surveys and data collection are needed to capture the spatial and temporal variability of soil and crop parameters. Such results allowed us to conclude that, cost-effective and efficient EMI surveys, as one part of multi-source data for DSM, could be successfully used to characterize the spatial variability of soil salinity, to monitor the spatial and temporal dynamics of soil salinity, and to spatially estimate potential crop yield.

Soil moisture inferences from thermal infrared measurements of vegetation temperatures

NASA Technical Reports Server (NTRS)

Jackson, R. D. (Principal Investigator)

1981-01-01

Thermal infrared measurements of wheat (Triticum durum) canopy temperatures were used in a crop water stress index to infer root zone soil moisture. Results indicated that one time plant temperature measurement cannot produce precise estimates of root zone soil moisture due to complicating plant factors. Plant temperature measurements do yield useful qualitative information concerning soil moisture and plant condition.

Soil weathering agents are limited where deep tree roots are removed, even after decades of forest regeneration

NASA Astrophysics Data System (ADS)

Billings, S. A.; Richter, D. D., Jr.; Hirmas, D.; Lehmeier, C.; Bagchi, S.; Brecheisen, Z.; Sullivan, P. L.; Min, K.; Hauser, E.; Stair, R.; Flournoy, R.

2017-12-01

Deep roots pump reduced C deep into Earth's critical zone (CZ) as they grow and function. This action generates acid-forming CO2 and organic acids (OA) and fosters microbes that also produce these weathering agents. This phenomenon results in a regolith-weathering reaction front that propagates down with vertical root extension and water infiltration. Across old-growth hardwood, younger pine, and annual crop plots at the Calhoun Critical Zone Observatory, we tested the hypothesis that persistent absence of deep roots, a widespread anthropogenic phenomenon, reduces root- and microbially-mediated biogeochemical pools and fluxes important for weathering, even well below maximum root density. We also hypothesized that land use effects on deep soil biogeochemistry is evident even after decades of forest regeneration. Root abundance to 2 m declined with depth, and was greater in old-growth and regenerating forests than in crop plots at most depths. Old-growth soils also contain more roots than younger pine soils: between 30-45 and 70-80 cm depth, old-growth root abundances were greater than in regenerating forests, and old-growth soils exhibited root distributions with less severe declines with depth and harbored more root-associated bacteria than younger forests. Changing root abundances influenced concentrations of weathering agents. At 3 m, in situ soil [CO2] reached 6%, 4%, and 2% in old-growth, regenerating, and crop soils, respectively. Soil organic C (SOC) and extractable OC (EOC, an OA proxy) did not differ across land use, but at 4-5 m EOC/SOC was higher in old-growth compared to regenerating forests and crop soils (20.0±2.6 vs. 2.0±1.0%). We suggest that biogeochemistry deep beneath old-growth forests reflects greater root prevalence and propensity for generation of weathering agents, and that disturbance regimes inducing deep root mortality impose top-down signals relevant to weathering processes deep in Earth's CZ even after decades of forest regeneration.

Model development for prediction of soil water dynamics in plant production.

PubMed

Hu, Zhengfeng; Jin, Huixia; Zhang, Kefeng

2015-09-01

Optimizing water use in agriculture and medicinal plants is crucially important worldwide. Soil sensor-controlled irrigation systems are increasingly becoming available. However it is questionable whether irrigation scheduling based on soil measurements in the top soil could make best use of water for deep-rooted crops. In this study a mechanistic model was employed to investigate water extraction by a deep-rooted cabbage crop from the soil profile throughout crop growth. The model accounts all key processes governing water dynamics in the soil-plant-atmosphere system. Results show that the subsoil provides a significant proportion of the seasonal transpiration, about a third of water transpired over the whole growing season. This suggests that soil water in the entire root zone should be taken into consideration in irrigation scheduling, and for sensor-controlled irrigation systems sensors in the subsoil are essential for detecting soil water status for deep-rooted crops.

Water Uptake along the Length of Grapevine Fine Roots: Developmental anatomy, tissue specific aquaporin expression, and pathways of water transport

USDA-ARS?s Scientific Manuscript database

To better understand water uptake patterns in root systems of woody perennial crops, we detailed the developmental anatomy and hydraulic physiology along the length of grapevine fine roots- from the tip to secondary growth zones. Our characterization included localization of suberized structures an...

Association of Shifting Populations in the Root Zone Microbiome of Millet with Enhanced Crop Productivity in the Sahel Region (Africa)

PubMed Central

Assigbetse, Komi; Bayala, Roger; Chapuis-Lardy, Lydie; Dick, Richard P.; McSpadden Gardener, Brian B.

2015-01-01

This study characterized specific changes in the millet root zone microbiome stimulated by long-term woody-shrub intercropping at different sites in Senegal. At the two study sites, intercropping with woody shrubs and shrub residue resulted in a significant increase in millet [Pennisetum glaucum (L.) R. Br.] yield (P < 0.05) and associated patterns of increased diversity in both bacterial and fungal communities in the root zone of the crop. Across four experiments, operational taxonomic units (OTUs) belonging to Chitinophaga were consistently significantly (P < 0.001) enriched in the intercropped samples, and “Candidatus Koribacter” was consistently significantly enriched in samples where millet was grown alone. Those OTUs belonging to Chitinophaga were enriched more than 30-fold in residue-amended samples and formed a distinct subgroup from all OTUs detected in the genus. Additionally, OTUs belonging to 8 fungal genera (Aspergillus, Coniella, Epicoccum, Fusarium, Gibberella, Lasiodiplodia, Penicillium, and Phoma) were significantly (P < 0.005) enriched in all experiments at all sites in intercropped samples. The OTUs of four genera (Epicoccum, Fusarium, Gibberella, and Haematonectria) were consistently enriched at sites where millet was grown alone. Those enriched OTUs in intercropped samples showed consistently large-magnitude differences, ranging from 30- to 1,000-fold increases in abundance. Consistently enriched OTUs in intercropped samples in the genera Aspergillus, Fusarium, and Penicillium also formed phylogenetically distinct subgroups. These results suggest that the intercropping system used here can influence the recruitment of potentially beneficial microorganisms to the root zone of millet and aid subsistence farmers in producing higher-yielding crops. PMID:25681183

Grain production versus resource and environmental costs: towards increasing sustainability of nutrient use in China.

PubMed

Jiao, Xiaoqiang; Lyu, Yang; Wu, Xiaobin; Li, Haigang; Cheng, Lingyun; Zhang, Chaochun; Yuan, Lixing; Jiang, Rongfeng; Jiang, Baiwen; Rengel, Zed; Zhang, Fusuo; Davies, William J; Shen, Jianbo

2016-09-01

Over the past five decades, Chinese grain production has increased 4-fold, from 110 Mt in 1961 to 557 Mt in 2014, with less than 9% of the world's arable land feeding 22% of the world's population, indicating a substantial contribution to global food security. However, compared with developed economies, such as the USA and the European Union, more than half of the increased crop production in China can be attributed to a rapid increase in the consumption of chemicals, particularly fertilizers. Excessive fertilization has caused low nutrient use efficiency and high environmental costs in grain production. We analysed the key requirements underpinning increased sustainability of crop production in China, as follows: (i) enhance nutrient use efficiency and reduce nutrient losses by fertilizing roots not soil to maximize root/rhizosphere efficiency with innovative root zone nutrient management; (ii) improve crop productivity and resource use efficiency by matching the best agronomic management practices with crop improvement; and (iii) promote technology transfer of the root zone nutrient management to achieve the target of high yields and high efficiency with low environmental risks on a broad scale. Coordinating grain production and environmental protection by increasing the sustainability of nutrient use will be a key step in achieving sustainable crop production in Chinese agriculture. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Simulating the fate of water in field soil crop environment

NASA Astrophysics Data System (ADS)

Cameira, M. R.; Fernando, R. M.; Ahuja, L.; Pereira, L.

2005-12-01

This paper presents an evaluation of the Root Zone Water Quality Model(RZWQM) for assessing the fate of water in the soil-crop environment at the field scale under the particular conditions of a Mediterranean region. The RZWQM model is a one-dimensional dual porosity model that allows flow in macropores. It integrates the physical, biological and chemical processes occurring in the root zone, allowing the simulation of a wide spectrum of agricultural management practices. This study involved the evaluation of the soil, hydrologic and crop development sub-models within the RZWQM for two distinct agricultural systems, one consisting of a grain corn planted in a silty loam soil, irrigated by level basins and the other a forage corn planted in a sandy soil, irrigated by sprinklers. Evaluation was performed at two distinct levels. At the first level the model capability to fit the measured data was analyzed (calibration). At the second level the model's capability to extrapolate and predict the system behavior for conditions different than those used when fitting the model was assessed (validation). In a subsequent paper the same type of evaluation is presented for the nitrogen transformation and transport model. At the first level a change in the crop evapotranspiration (ETc) formulation was introduced, based upon the definition of the effective leaf area, resulting in a 51% decrease in the root mean square error of the ETc simulations. As a result the simulation of the root water uptake was greatly improved. A new bottom boundary condition was implemented to account for the presence of a shallow water table. This improved the simulation of the water table depths and consequently the soil water evolution within the root zone. The soil hydraulic parameters and the crop variety specific parameters were calibrated in order to minimize the simulation errors of soil water and crop development. At the second level crop yield was predicted with an error of 1.1 and 2.8% for grain and forage corn, respectively. Soil water was predicted with an efficiency ranging from 50 to 95% for the silty loam soil and between 56 and 72% for the sandy soil. The purposed calibration procedure allowed the model to predict crop development, yield and the water balance terms, with accuracy that is acceptable in practical applications for complex and spatially variable field conditions. An iterative method was required to account for the strong interaction between the different model components, based upon detailed experimental data on soils and crops.

Spatial variation of corn canopy temperature as dependent upon soil texture and crop rooting characteristics

NASA Technical Reports Server (NTRS)

Choudhury, B. J.

1983-01-01

A soil plant atmosphere model for corn (Zea mays L.) together with the scaling theory for soil hydraulic heterogeneity are used to study the sensitivity of spatial variation of canopy temperature to field averaged soil texture and crop rooting characteristics. The soil plant atmosphere model explicitly solves a continuity equation for water flux resulting from root water uptake, changes in plant water storage and transpirational flux. Dynamical equations for root zone soil water potential and the plant water storage models the progressive drying of soil, and day time dehydration and night time hydration of the crop. The statistic of scaling parameter which describes the spatial variation of soil hydraulic conductivity and matric potential is assumed to be independent of soil texture class. The field averaged soil hydraulic characteristics are chosen to be representative of loamy sand and clay loam soils. Two rooting characteristics are chosen, one shallow and the other deep rooted. The simulation shows that the range of canopy temperatures in the clayey soil is less than 1K, but for the sandy soil the range is about 2.5 and 5.0 K, respectively, for the shallow and deep rooted crops.

Global root zone storage capacity from satellite-based evaporation data

NASA Astrophysics Data System (ADS)

Wang-Erlandsson, Lan; Bastiaanssen, Wim; Gao, Hongkai; Jägermeyr, Jonas; Senay, Gabriel; van Dijk, Albert; Guerschman, Juan; Keys, Patrick; Gordon, Line; Savenije, Hubert

2016-04-01

We present an "earth observation-based" method for estimating root zone storage capacity - a critical, yet uncertain parameter in hydrological and land surface modelling. By assuming that vegetation optimises its root zone storage capacity to bridge critical dry periods, we were able to use state-of-the-art satellite-based evaporation data computed with independent energy balance equations to derive gridded root zone storage capacity at global scale. This approach does not require soil or vegetation information, is model independent, and is in principle scale-independent. In contrast to traditional look-up table approaches, our method captures the variability in root zone storage capacity within land cover type, including in rainforests where direct measurements of root depth otherwise are scarce. Implementing the estimated root zone storage capacity in the global hydrological model STEAM improved evaporation simulation overall, and in particular during the least evaporating months in sub-humid to humid regions with moderate to high seasonality. We find that evergreen forests are able to create a large storage to buffer for extreme droughts (with a return period of up to 60 years), in contrast to short vegetation and crops (which seem to adapt to a drought return period of about 2 years). The presented method to estimate root zone storage capacity eliminates the need for soils and rooting depth information, which could be a game-changer in global land surface modelling.

RISK OF UNSATURATED/SATURATED TRANSPORT AND TRANSFORMATION OF CHEMICAL CONCENTRATIONS (RUSTIC): VOLUME 1. THEORY AND CODE VERIFICATION

EPA Science Inventory

The RUSTIC program links three subordinate models--PRZM, VADOFT, and SAFTMOD--in order to predict pesticide transport and transformation through the crop root zone, the unsaturated zone, and the saturated zone to drinking water wells. PRZM is a one-dimensional finite-difference m...

Modeling the long-term effect of winter cover crops on nitrate transport in artificially drained fields across the Midwest U.S.

USDA-ARS?s Scientific Manuscript database

A fall-planted cover crop is a management practice with multiple benefits including reducing nitrate losses from artificially drained fields. We used the Root Zone Water Quality Model (RZWQM) to simulate the impact of a cereal rye cover crop on reducing nitrate losses from drained fields across five...

Geophysical methods

USDA-ARS?s Scientific Manuscript database

Near-surface geophysical methods have become have become important tools for agriculture. Geophysics employed for agriculture tends to be heavily focused on a 2 m zone directly beneath the ground surface, which includes the crop root zone and all, or at least most, of the soil profile. Resistivity...

Micro 3D ERT tomography for data assimilation modelling of active root zone

NASA Astrophysics Data System (ADS)

Vanella, Daniela; Busato, Laura; Boaga, Jacopo; Cassiani, Giorgio; Binley, Andrew; Putti, Mario; Consoli, Simona

2016-04-01

Within the soil-plant-atmosphere system, root activity plays a fundamental role, as it connects different domains and allows a large part of the water and nutrient exchanges necessary for plant sustenance. The understanding of these processes is not only useful from an environmental point of view, making a fundamental contribution to the understanding of the critical zone dynamics, but also plays a pivotal role in precision agriculture, where the optimisation of water resources exploitation is mandatory and often carried out through deficit irrigation techniques. In this work, we present the results of non-invasive monitoring of the active root zone of two orange trees (Citrus sinensis, cv Tarocco Ippolito) located in an orange orchard in eastern Sicily (Italy) and drip irrigated with two different techniques: partial root drying and 100% crop evapotranspiration. The main goal of the monitoring activity is to assess possible differences between the developed root systems and the root water uptake between the two irrigation strategies. The monitoring is conducted using 3D micro-electrical resistivity tomography (ERT) based on an apparatus composed of a number of micro-boreholes (about 1.2 m deep) housing 12 electrodes each, plus a number of surface electrodes. Time-lapse measurements conducted both with long-term periodicity and short-term repetition before and after irrigation clearly highlight the presence and distribution of root water uptake zone both at shallow and larger depth, likely to correspond to zones utilized during the irrigation period (shallow) and during the time when the crop is not irrigated (deep). Subsidiary information is available in terms of precipitation, sap flow measurements and micrometeorological evapotranspiration estimates. This data ensemble lends itself to the assimilation into a variably saturated flow model, where both soil hydraulic parameters and root distribution shall be identified. Preliminary results in this directions show the potential of the method and its exciting outlook.

Application of time-lapse ERT to Characterize Soil-Water-Disease Interactions of Citrus Orchard - Case Study

NASA Astrophysics Data System (ADS)

Peddinti, S. R.; Kbvn, D. P.; Ranjan, S.; Suradhaniwar, S.; J, P. A.; R M, G.

2015-12-01

Vidarbha region in Maharashtra, India (home for mandarin Orange) experience severe climatic uncertainties resulting in crop failure. Phytopthora are the soil-borne fungal species that accumulate in the presence of moisture, and attack the root / trunk system of Orange trees at any stage. A scientific understanding of soil-moisture-disease relations within the active root zone under different climatic, irrigation, and crop cycle conditions can help in practicing management activities for improved crop yield. In this study, we developed a protocol for performing 3-D time-lapse electrical resistivity tomography (ERT) at micro scale resolution to monitor the changes in resistivity distribution within the root zone of Orange trees. A total of 40 electrodes, forming a grid of 3.5 m x 2 m around each Orange tree were used in ERT survey with gradient and Wenner configurations. A laboratory test on un-disturbed soil samples of the region was performed to plot the variation of electrical conductivity with saturation. Curve fitting techniques were applied to get the modified Archie's model parameters. The calibrated model was further applied to generate the 3-D soil moisture profiles of the study area. The point estimates of soil moisture were validated using TDR probe measurements at 3 different depths (10, 20, and 40 cm) near to the root zone. In order to understand the effect of soil-water relations on plant-disease relations, we performed ERT analysis at two locations, one at healthy and other at Phytopthora affected Orange tree during the crop cycle, under dry and irrigated conditions. The degree to which an Orange tree is affected by Phytopthora under each condition is evaluated using 'grading scale' approach following visual inspection of the canopy features. Spatial-temporal distribution of moisture profiles is co-related with grading scales to comment on the effect of climatic and irrigation scenarios on the degree and intensity of crop disease caused by Phytopthora.

Optimizing ET-based irrigation scheduling for wheat and maize with water constraints

USDA-ARS?s Scientific Manuscript database

Deficit irrigation is proved to increase crop water use efficiency (WUE) in water limited areas, but effective irrigation required better understanding of crop responses to water stress intensity and timing. In this study, the Root Zone Water Quality Model (RZWQM) was first calibrated and validated ...

Improving root-zone soil moisture estimations using dynamic root growth and crop phenology

USDA-ARS?s Scientific Manuscript database

Water Energy Balance (WEB) Soil Vegetation Atmosphere Transfer (SVAT) modelling can be used to estimate soil moisture by forcing the model with observed data such as precipitation and solar radiation. Recently, an innovative approach that assimilates remotely sensed thermal infrared (TIR) observatio...

MODELS FOR LEACHING OF PESTICIDES IN SOILS AND GROUNDWATER

EPA Science Inventory

Models are developed which describe leaching of pesticides in the root zone and the intermediate vadose zone, and flushing of residual solute mass in the aquifer. Pollutants' loss pathways in the soil, such as volatilization, crop uptake, and biochemical decay, are emphasized, a...

Soil Water Sensing-Focus on Variable Rate Irrigation

USDA-ARS?s Scientific Manuscript database

Irrigation scheduling using soil water sensors is an exercise in maintaining the water content of the crop root zone soil above a lower limit defined by the management allowed depletion (MAD) for that soil and crop, but not so wet that too much water is lost to deep percolation. The management allow...

Crop model application to soybean irrigation management in the mid-south USA

USDA-ARS?s Scientific Manuscript database

Since mid 1990s, there have been a rapid development and application of crop growth models such as APEX (the Agricultural Policy/Environmental eXtender) and RZWQM2 (Root Zone Water Quality Model). Such process-oriented models have been designed to study the interactions of genetypes, weather, soil, ...

A thermal-based remote sensing modelling system for estimating crop water use and stress from field to regional scales

USDA-ARS?s Scientific Manuscript database

Thermal-infrared remote sensing of land surface temperature provides valuable information for quantifying root-zone water availability, evapotranspiration (ET) and crop condition. A thermal-based scheme, called the Two-Source Energy Balance (TSEB) model, solves for the soil/substrate and canopy temp...

Coupled stochastic soil moisture simulation-optimization model of deficit irrigation

NASA Astrophysics Data System (ADS)

Alizadeh, Hosein; Mousavi, S. Jamshid

2013-07-01

This study presents an explicit stochastic optimization-simulation model of short-term deficit irrigation management for large-scale irrigation districts. The model which is a nonlinear nonconvex program with an economic objective function is built on an agrohydrological simulation component. The simulation component integrates (1) an explicit stochastic model of soil moisture dynamics of the crop-root zone considering interaction of stochastic rainfall and irrigation with shallow water table effects, (2) a conceptual root zone salt balance model, and 3) the FAO crop yield model. Particle Swarm Optimization algorithm, linked to the simulation component, solves the resulting nonconvex program with a significantly better computational performance compared to a Monte Carlo-based implicit stochastic optimization model. The model has been tested first by applying it in single-crop irrigation problems through which the effects of the severity of water deficit on the objective function (net benefit), root-zone water balance, and irrigation water needs have been assessed. Then, the model has been applied in Dasht-e-Abbas and Ein-khosh Fakkeh Irrigation Districts (DAID and EFID) of the Karkheh Basin in southwest of Iran. While the maximum net benefit has been obtained for a stress-avoidance (SA) irrigation policy, the highest water profitability has been resulted when only about 60% of the water used in the SA policy is applied. The DAID with respectively 33% of total cultivated area and 37% of total applied water has produced only 14% of the total net benefit due to low-valued crops and adverse soil and shallow water table conditions.

Mini-review of knowledge gaps in salt tolerance of plants applied to willows and poplars

Treesearch

Jaconette Mirck; Ronald S. Zalesny

2015-01-01

Salt tolerance of agricultural crops has been studied since the 1940, but knowledge regarding salt tolerance of woody crops is still in its initial phase. Salt tolerance of agricultural crops has been expressed as the yield decrease due to a certain salt concentration within the root zone as compared to a non-saline control. The most well-known plant response curve to...

Estimation of available water capacity components of two-layered soils using crop model inversion: Effect of crop type and water regime

NASA Astrophysics Data System (ADS)

Sreelash, K.; Buis, Samuel; Sekhar, M.; Ruiz, Laurent; Kumar Tomer, Sat; Guérif, Martine

2017-03-01

Characterization of the soil water reservoir is critical for understanding the interactions between crops and their environment and the impacts of land use and environmental changes on the hydrology of agricultural catchments especially in tropical context. Recent studies have shown that inversion of crop models is a powerful tool for retrieving information on root zone properties. Increasing availability of remotely sensed soil and vegetation observations makes it well suited for large scale applications. The potential of this methodology has however never been properly evaluated on extensive experimental datasets and previous studies suggested that the quality of estimation of soil hydraulic properties may vary depending on agro-environmental situations. The objective of this study was to evaluate this approach on an extensive field experiment. The dataset covered four crops (sunflower, sorghum, turmeric, maize) grown on different soils and several years in South India. The components of AWC (available water capacity) namely soil water content at field capacity and wilting point, and soil depth of two-layered soils were estimated by inversion of the crop model STICS with the GLUE (generalized likelihood uncertainty estimation) approach using observations of surface soil moisture (SSM; typically from 0 to 10 cm deep) and leaf area index (LAI), which are attainable from radar remote sensing in tropical regions with frequent cloudy conditions. The results showed that the quality of parameter estimation largely depends on the hydric regime and its interaction with crop type. A mean relative absolute error of 5% for field capacity of surface layer, 10% for field capacity of root zone, 15% for wilting point of surface layer and root zone, and 20% for soil depth can be obtained in favorable conditions. A few observations of SSM (during wet and dry soil moisture periods) and LAI (within water stress periods) were sufficient to significantly improve the estimation of AWC components. These results show the potential of crop model inversion for estimating the AWC components of two-layered soils and may guide the sampling of representative years and fields to use this technique for mapping soil properties that are relevant for distributed hydrological modelling.

Soil water sensing: Implications of sensor capabilities for variable rate irrigation management

USDA-ARS?s Scientific Manuscript database

Irrigation scheduling using soil water sensors aims at maintaining the soil water content in the crop root zone above a lower limit defined by the management allowed depletion (MAD) for that soil and crop, but not so wet that too much water is lost to deep percolation, evaporation and runoff or that...

[Effects of two phenolic acids on root zone soil nutrients, soil enzyme activities and pod yield of peanut].

PubMed

Li, Qing Kai; Liu, Ping; Tang, Zhao Hui; Zhao, Hai Jun; Wang, Jiang Tao; Song, Xiao Zong; Yang, Li; Wan, Shu Bo

2016-04-22

In order to investigate the relationship between the accumulation of phenolic acids in peanut continuous cropping soil and the continuous cropping obstacle of peanut, the effects of p-hydroxy benzoic acid and cinnamic acid on peanut root zone soil nutrients, soil enzyme activities and yield of peanut were studied by pot experiment at three stages of peanut, i.e. the pegging stage of peanut (45 days after seedling), the early podding (75 days after seedling) and the end of podding (105 days after seedling) stages. The results showed that the peanut root zone soil nutrients and enzyme activities changed obviously under the two phenolic acids treatment, especially at the pegging stage of peanut. The soil alkali-hydrolyzable nitrogen, available phosphorus, available potassium, and soil enzyme activities (urease, sucrose, neutral phosphatase) were decreased significantly. At the early and end of podding stages of peanut, the effects of the two phenolic acids on peanut root zone soil nutrients and soil enzyme activities were under a weakening trend. The allelopathy of cinnamic acid was stronger than that of p-hydroxy benzoic acid at the same initial content. The pod yield per pot was reduced by 45.9% and 52.8%, while the pod number of per plant was reduced by 46.2% and 48.9% at higher concentration (80 mg·kg -1 dry soil) of p-hydroxy benzoic acid and cinnamic acid treatments, respectively.

Soil nitrogen balance under wastewater management: Field measurements and simulation results

USGS Publications Warehouse

Sophocleous, M.; Townsend, M.A.; Vocasek, F.; Ma, Liwang; KC, A.

2009-01-01

The use of treated wastewater for irrigation of crops could result in high nitrate-nitrogen (NO3-N) concentrations in the vadose zone and ground water. The goal of this 2-yr field-monitoring study in the deep silty clay loam soils south of Dodge City, Kansas, was to assess how and under what circumstances N from the secondary-treated, wastewater-irrigated corn reached the deep (20-45 m) water table of the underlying High Plains aquifer and what could be done to minimize this problem. We collected 15.2-m-deep soil cores for characterization of physical and chemical properties; installed neutron probe access tubes to measure soil-water content and suction lysimeters to sample soil water periodically; sampled monitoring, irrigation, and domestic wells in the area; and obtained climatic, crop, irrigation, and N application rate records for two wastewater-irrigated study sites. These data and additional information were used to run the Root Zone Water Quality Model to identify key parameters and processes that influence N losses in the study area. We demonstrated that NO3-N transport processes result in significant accumulations of N in the vadose zone and that NO3-N in the underlying ground water is increasing with time. Root Zone Water Quality Model simulations for two wastewater-irrigated study sites indicated that reducing levels of corn N fertilization by more than half to 170 kg ha-1 substantially increases N-use efficiency and achieves near-maximum crop yield. Combining such measures with a crop rotation that includes alfalfa should further reduce the accumulation and downward movement of NO3-N in the soil profile. Copyright ?? 2009 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Nitrogen fluxes through unsaturated zones in five agricultural settings across the United States

USGS Publications Warehouse

Green, C.T.; Fisher, L.H.; Bekins, B.A.

2008-01-01

The main physical and chemical controls on nitrogen (N) fluxes between the root zone and the water table were determined for agricultural sites in California, Indiana, Maryland, Nebraska, and Washington from 2004 to 2005. Sites included irrigated and nonirrigated fields; soil textures ranging from clay to sand; crops including corn, soybeans, almonds, and pasture; and unsaturated zone thicknesses ranging from 1 to 22 m. Chemical analyses of water from lysimeters and shallow wells indicate that advective transport of nitrate is the dominant process affecting the flux of N below the root zone. Vertical profiles of (i) nitrogen species, (ii) stable isotopes of nitrogen and oxygen, and (iii) oxygen, N, and argon in unsaturated zone air and correlations between N and other agricultural chemicals indicate that reactions do not greatly affect N concentrations between the root zone and the capillary fringe. As a result, physical factors, such as N application rate, water inputs, and evapotranspiration, control the differences in concentrations among the sites. Concentrations of N in shallow lysimeters exhibit seasonal variation, whereas concentrations in lysimeters deeper than a few meters are relatively stable. Based on concentration and recharge estimates, fluxes of N through the deep unsaturated zone range from 7 to 99 kg ha-1 yr-1. Vertical fluxes of N in ground water are lower due to spatial and historical changes in N inputs. High N fluxes are associated with coarse sediments and high N application rates. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Analytical steady-state solutions for water-limited cropping systems using saline irrigation water

NASA Astrophysics Data System (ADS)

Skaggs, T. H.; Anderson, R. G.; Corwin, D. L.; Suarez, D. L.

2014-12-01

Due to the diminishing availability of good quality water for irrigation, it is increasingly important that irrigation and salinity management tools be able to target submaximal crop yields and support the use of marginal quality waters. In this work, we present a steady-state irrigated systems modeling framework that accounts for reduced plant water uptake due to root zone salinity. Two explicit, closed-form analytical solutions for the root zone solute concentration profile are obtained, corresponding to two alternative functional forms of the uptake reduction function. The solutions express a general relationship between irrigation water salinity, irrigation rate, crop salt tolerance, crop transpiration, and (using standard approximations) crop yield. Example applications are illustrated, including the calculation of irrigation requirements for obtaining targeted submaximal yields, and the generation of crop-water production functions for varying irrigation waters, irrigation rates, and crops. Model predictions are shown to be mostly consistent with existing models and available experimental data. Yet the new solutions possess advantages over available alternatives, including: (i) the solutions were derived from a complete physical-mathematical description of the system, rather than based on an ad hoc formulation; (ii) the analytical solutions are explicit and can be evaluated without iterative techniques; (iii) the solutions permit consideration of two common functional forms of salinity induced reductions in crop water uptake, rather than being tied to one particular representation; and (iv) the utilized modeling framework is compatible with leading transient-state numerical models.

Soil moisture dynamics modeling considering multi-layer root zone.

PubMed

Kumar, R; Shankar, V; Jat, M K

2013-01-01

The moisture uptake by plant from soil is a key process for plant growth and movement of water in the soil-plant system. A non-linear root water uptake (RWU) model was developed for a multi-layer crop root zone. The model comprised two parts: (1) model formulation and (2) moisture flow prediction. The developed model was tested for its efficiency in predicting moisture depletion in a non-uniform root zone. A field experiment on wheat (Triticum aestivum) was conducted in the sub-temperate sub-humid agro-climate of Solan, Himachal Pradesh, India. Model-predicted soil moisture parameters, i.e., moisture status at various depths, moisture depletion and soil moisture profile in the root zone, are in good agreement with experiment results. The results of simulation emphasize the utility of the RWU model across different agro-climatic regions. The model can be used for sound irrigation management especially in water-scarce humid, temperate, arid and semi-arid regions and can also be integrated with a water transport equation to predict the solute uptake by plant biomass.

BioChar Amendments for Improved Plant Microbiome and Crop Health Project

NASA Technical Reports Server (NTRS)

Zeitlin, Nancy; Smith, David; Catechis, John; Khodadad, Christina; Koss, Lawrence; Mejia, Oscar Monje; Spencer, Lashelle

2015-01-01

Plant-based Environmental Control and Life Support Systems (ECLSS) enable human existence beyond Low Earth Orbit (LEO) by providing oxygen, water and food. The root modules are key to success of sustainable plant-based ECLSS. In microgravity, hydroponics is not viable as gases separate from fluids, thus plants are grown in soil substrates, which are bulky and must be maintained for optimal plant growth. Soil substrate selection also impacts ECLSS self-sufficiency. Savings in resupply mass and volume are possible if soil is developed in-situ from regolith found on moons or planets. Biochar, a soil amendment used by ancient civilizations to improve soil fertility that promotes plant health and root zone microbes, can be produced by pyrolysis of plant biomass. The goal is to study the effect of biochar on sequential crop plantings in a single root module. The objectives are: 1) follow changes in root-microbe interactions using metagenomic techniques, 2) measure changes in microbial populations during sequential cropping in a single root module, and 3) examine effect of biochar amendments.

Impact assessment and recommendation of alternative conjunctive water use strategies for salt affected agricultural lands through a field scale decision support system - a case study.

PubMed

Kaur, Ravinder; Paul, Madhumita; Malik, Rashmi

2007-06-01

Conjunctive use of saline/non-saline irrigation waters is generally aimed at minimizing yield losses and enhancing flexibility of cropping, without much alteration in farming operations. Recommendation of location-specific suitable conjunctive water use plans requires assessment of their long-term impacts on soil salinization/sodification and crop yield reductions. This is conventionally achieved through long-term field experiments. However such impact evaluations are site specific, expensive and time consuming. Appropriate decision support systems (DSS) can be time-efficient and cost-effective means for such long-term impact evaluations. This study demonstrates the application of one such (indigenously developed) DSS for recommending best conjunctive water use plans for a, rice-wheat growing, salt affected farmer's field in Gurgaon district of Haryana (India). Before application, the DSS was extensively validated on several farmers and controlled experimental fields in Gurgaon and Karnal districts of Haryana (India). Validation of DSS showed its potential to give realistic estimates of root zone soil salinity (with R = 0.76-0.94; AMRE = 0.03-0.06; RMSPD = 0.51-0.90); sodicity (with R = 0.99; AMRE = 0.02; RMSPD = 0.84) and relative crop yield reductions (AMRE = 0.24), under existing (local) resource management practices. Long term (10 years) root zone salt build ups and associated rice/wheat crop yield reductions, in a salt affected farmer's field, under varied conjunctive water use scenarios were evaluated with the validated DSS. It was observed that long-term applications of canal (CW) and tube well (TW) waters in a cycle and in 1:1 mixed mode, during Kharif season, predicted higher average root zone salt reductions (2-9%) and lower rice crop yield reductions (4-5%) than the existing practice of 3-CW, 3-TW, 3-CW. Besides this, long-term application of 75% CW mixed with 25% TW, during Rabi season, predicted about 17% lower average root-zone salt reductions than the cyclic applications of (1-CW, 1-TW, 2-CW) and (2-CW, 1-TW, 1-CW, i.e., existing irrigation strategy). However, average wheat crop yield reductions (16-17%) simulated under all these strategies were almost at par. In general, cyclic-conjunctive water use strategies emerged as better options than the blending modes. These results were in complete confirmation with actual long-term conjunctive water use experiments on similar soils. It was thus observed that such pre-validated tools could be efficient means for designing, local resource and target crop yield-specific, appropriate conjunctive water use plans for irrigated agricultural lands.

A root zone modelling approach to estimating groundwater recharge from irrigated areas

NASA Astrophysics Data System (ADS)

Jiménez-Martínez, J.; Skaggs, T. H.; van Genuchten, M. Th.; Candela, L.

2009-03-01

SummaryIn irrigated semi-arid and arid regions, accurate knowledge of groundwater recharge is important for the sustainable management of scarce water resources. The Campo de Cartagena area of southeast Spain is a semi-arid region where irrigation return flow accounts for a substantial portion of recharge. In this study we estimated irrigation return flow using a root zone modelling approach in which irrigation, evapotranspiration, and soil moisture dynamics for specific crops and irrigation regimes were simulated with the HYDRUS-1D software package. The model was calibrated using field data collected in an experimental plot. Good agreement was achieved between the HYDRUS-1D simulations and field measurements made under melon and lettuce crops. The simulations indicated that water use by the crops was below potential levels despite regular irrigation. The fraction of applied water (irrigation plus precipitation) going to recharge ranged from 22% for a summer melon crop to 68% for a fall lettuce crop. In total, we estimate that irrigation of annual fruits and vegetables produces 26 hm 3 y -1 of groundwater recharge to the top unconfined aquifer. This estimate does not include important irrigated perennial crops in the region, such as artichoke and citrus. Overall, the results suggest a greater amount of irrigation return flow in the Campo de Cartagena region than was previously estimated.

[Water-saving mechanisms of intercropping system in improving cropland water use efficiency].

PubMed

Zhang, Feng-Yun; Wu, Pu-Te; Zhao, Xi-Ning; Cheng, Xue-Feng

2012-05-01

Based on the multi-disciplinary researches, and in terms of the transformation efficiency of surface water to soil water, availability of cropland soil water, crop canopy structure, total irrigation volume needed on a given area, and crop yield, this paper discussed the water-saving mechanisms of intercropping system in improving cropland water use efficiency. Intercropping system could promote the full use of cropland water by plant roots, increase the water storage in root zone, reduce the inter-row evaporation and control excessive transpiration, and create a special microclimate advantageous to the plant growth and development. In addition, intercropping system could optimize source-sink relationship, provide a sound foundation for intensively utilizing resources temporally and spatially, and increase the crop yield per unit area greatly without increase of water consumption, so as to promote the crop water use efficiency effectively.

Prediction of Root Zone Soil Moisture using Remote Sensing Products and In-Situ Observation under Climate Change Scenario

NASA Astrophysics Data System (ADS)

Singh, G.; Panda, R. K.; Mohanty, B.

2015-12-01

Prediction of root zone soil moisture status at field level is vital for developing efficient agricultural water management schemes. In this study, root zone soil moisture was estimated across the Rana watershed in Eastern India, by assimilation of near-surface soil moisture estimate from SMOS satellite into a physically-based Soil-Water-Atmosphere-Plant (SWAP) model. An ensemble Kalman filter (EnKF) technique coupled with SWAP model was used for assimilating the satellite soil moisture observation at different spatial scales. The universal triangle concept and artificial intelligence techniques were applied to disaggregate the SMOS satellite monitored near-surface soil moisture at a 40 km resolution to finer scale (1 km resolution), using higher spatial resolution of MODIS derived vegetation indices (NDVI) and land surface temperature (Ts). The disaggregated surface soil moisture were compared to ground-based measurements in diverse landscape using portable impedance probe and gravimetric samples. Simulated root zone soil moisture were compared with continuous soil moisture profile measurements at three monitoring stations. In addition, the impact of projected climate change on root zone soil moisture were also evaluated. The climate change projections of rainfall were analyzed for the Rana watershed from statistically downscaled Global Circulation Models (GCMs). The long-term root zone soil moisture dynamics were estimated by including a rainfall generator of likely scenarios. The predicted long term root zone soil moisture status at finer scale can help in developing efficient agricultural water management schemes to increase crop production, which lead to enhance the water use efficiency.

Influence of crop rotation and tillage intensity on soil physical properties and functions

NASA Astrophysics Data System (ADS)

Krümmelbein, Julia

2013-04-01

Soil tillage intensity can vary concerning tillage depth, frequency, power input into the soil and degree of soil turn-over. Conventional tillage systems where a plough is regularly used to turn over the soil can be differentiated from reduced tillage systems without ploughing but with loosening the upper soil and no tillage systems. Between conventional tillage and no tillage is a wide range of more or less reduced tillage systems. In our case the different tillage intensities are not induced by different agricultural machinery or techniques, but result from varying crop rotations with more or less perennial crops and therefore lower or higher tillage frequency. Our experimental area constitutes of quite unstructured substrates, partly heavily compacted. The development of a functioning soil structure and accumulation of nutrients and organic matter are of high importance. Three different crop rotations induce varying tillage intensities and frequencies. The first crop rotation (Alfalfa monoculture) has only experienced seed bed preparation once and subsequently is wheeled once a year to cut and chaff the biomass. The second crop rotation contains perennial and annual crops and has therefore been tilled more often, while the third crop rotation consists only of annual crops with annual seedbed preparation. Our results show that reduced tillage intensity/frequency combined with the intense root growth of Alfalfa creates the most favourable soil physical state of the substrate compared to increased tillage and lower root growth intensity of the other crop rotations. Soil tillage disturbs soil structure development, especially when the substrate is mechanically unstable as in our case. For such problematic locations it is recommendable to reduce tillage intensity and/or frequency to allow the development of soil structure enhanced by root growth and thereby the accumulation of organic matter and nutrients within the rooting zone.

Root system-based limits to agricultural productivity and efficiency: the farming systems context

PubMed Central

Thorup-Kristensen, Kristian; Kirkegaard, John

2016-01-01

Background There has been renewed global interest in both genetic and management strategies to improve root system function in order to improve agricultural productivity and minimize environmental damage. Improving root system capture of water and nutrients is an obvious strategy, yet few studies consider the important interactions between the genetic improvements proposed, and crop management at a system scale that will influence likely success. Scope To exemplify these interactions, the contrasting cereal-based farming systems of Denmark and Australia were used, where the improved uptake of water and nitrogen from deeper soil layers has been proposed to improve productivity and environmental outcomes in both systems. The analysis showed that water and nitrogen availability, especially in deeper layers (>1 m), was significantly affected by the preceding crops and management, and likely to interact strongly with deeper rooting as a specific trait of interest. Conclusions In the semi-arid Australian environment, grain yield impacts from storage and uptake of water from depth (>1 m) could be influenced to a stronger degree by preceding crop choice (0·42 t ha–1), pre-crop fallow management (0·65 t ha–1) and sowing date (0·63 t ha–1) than by current genetic differences in rooting depth (0·36 t ha–1). Matching of deep-rooted genotypes to management provided the greatest improvements related to deep water capture. In the wetter environment of Denmark, reduced leaching of N was the focus. Here the amount of N moving below the root zone was also influenced by previous crop choice or cover crop management (effects up to 85 kg N ha–1) and wheat crop sowing date (up to 45 kg ha–1), effects which over-ride the effects of differences in rooting depth among genotypes. These examples highlight the need to understand the farming system context and important G × E × M interactions in studies on proposed genetic improvements to root systems for improved productivity or environmental outcomes. PMID:27411680

Estimating Soil and Root Parameters of Biofuel Crops using a Hydrogeophysical Inversion

NASA Astrophysics Data System (ADS)

Kuhl, A.; Kendall, A. D.; Van Dam, R. L.; Hyndman, D. W.

2017-12-01

Transpiration is the dominant pathway for continental water exchange to the atmosphere, and therefore a crucial aspect of modeling water balances at many scales. The root water uptake dynamics that control transpiration are dependent on soil water availability, as well as the root distribution. However, the root distribution is determined by many factors beyond the plant species alone, including climate conditions and soil texture. Despite the significant contribution of transpiration to global water fluxes, modelling the complex critical zone processes that drive root water uptake remains a challenge. Geophysical tools such as electrical resistivity (ER), have been shown to be highly sensitive to water dynamics in the unsaturated zone. ER data can be temporally and spatially robust, covering large areas or long time periods non-invasively, which is an advantage over in-situ methods. Previous studies have shown the value of using hydrogeophysical inversions to estimate soil properties. Others have used hydrological inversions to estimate both soil properties and root distribution parameters. In this study, we combine these two approaches to create a coupled hydrogeophysical inversion that estimates root and retention curve parameters for a HYDRUS model. To test the feasibility of this new approach, we estimated daily water fluxes and root growth for several biofuel crops at a long-term ecological research site in Southwest Michigan, using monthly ER data from 2009 through 2011. Time domain reflectometry data at seven depths was used to validate modeled soil moisture estimates throughout the model period. This hydrogeophysical inversion method shows promise for improving root distribution and transpiration estimates across a wide variety of settings.

Contrasting physiological effects of partial root zone drying in field-grown grapevine (Vitis vinifera L. cv. Monastrell) according to total soil water availability

PubMed Central

Romero, Pascual; Dodd, Ian C.; Martinez-Cutillas, Adrian

2012-01-01

Different spatial distributions of soil moisture were imposed on field-grown grapevines by applying the same irrigation volumes to the entire (DI; deficit irrigation) or part of the (PRD; partial root zone drying) root zone. Five treatments were applied: controls irrigated at 60% ETc (crop evapotranspiration) for the whole season (308 mm year−1); DI-1 and PRD-1 that received the same irrigation as controls before fruit set, 30% ETc from fruit set to harvest and 45% ETc post-harvest (192 mm year−1); and DI-2 and PRD-2 that were the same, except that 15% ETc was applied from fruit set to harvest (142 mm year−1). Compared with DI-1, PRD-1 maintained higher leaf area post-veraison and increased root water uptake, whole-plant hydraulic conductance, leaf transpiration, stomatal conductance, and photosynthesis, but decreased intrinsic gas exchange efficiency without causing differences in leaf xylem abscisic acid (ABA) concentration. Compared with DI-2, PRD-2 increased leaf xylem ABA concentration and decreased root water uptake, whole-plant hydraulic conductance, leaf transpiration, stomatal conductance, and photosynthesis, mainly at the beginning of PRD cycles. Distinctive PRD effects (e.g. greater stomatal closure) depended on the volumetric soil water content of the wet root zone, as predicted from a model of root-to-shoot ABA signalling. PMID:22451721

Effects of soil water availability on water fluxes in winter wheat

NASA Astrophysics Data System (ADS)

Cai, G.; Vanderborght, J.; Langensiepen, M.; Vereecken, H.

2014-12-01

Quantifying soil water availability in water-limited ecosystems on plant water use continues to be a practical problem in agronomy. Transpiration which represents plant water demand is closely in relation to root water uptake in the root zone and sap flow in plant stems. However, few studies have been concentrated on influences of soil moisture on root water uptake and sap flow in crops. This study was undertaken to investigate (i) whether root water uptake and sap flow correlate with the transpiration estimated by the Penman-Monteith model for winter wheat(Triticum aestivum), and (ii) for which soil water potentials in the root zone, the root water uptake and sap flow rates in crop stems would be reduced. Therefore, we measured sap flow velocities by an improved heat-balance approach (Langensiepen et al., 2014), calculated crop transpiration by Penman-Monteith model, and simulated root water uptake by HYDRUS-1D on an hourly scale for different soil water status in winter wheat. In order to assess the effects of soil water potential on root water uptake and sap flow, an average soil water potential was calculated by weighting the soil water potential at a certain depth with the root length density. The temporal evolution of root length density was measured using horizontal rhizotubes that were installed at different depths.The results showed that root water uptake and sap flow matched well with the computed transpiration by Penman-Monteith model in winter wheat when the soil water potential was not limiting root water uptake. However, low soil water content restrained root water uptake, especially when soil water potential was lower than -90 kPa in the top soil. Sap flow in wheat was not affected by the observed soil water conditions, suggesting that stomatal conductance was not sensitive to soil water potentials. The effect of drought stress on root water uptake and sap flow in winter wheat was only investigated in a short time (after anthesis). Further research could focus on a long time (e.g. from vegetation to maturity) effect under different soil water conditions, such as irrigated, sheltered and normal status. Langensiepen, M., Kupisch, M., Graf, A., Schmidt, M. and Ewert, F., 2014. Improving the stem heat balance method for determining sap-flow in wheat. Agricultural and Forest Meteorology, 186: 34-42.

Importance of Vertical Coupling in Agricultural Models on Assimilation of Satellite-derived Soil Moisture

NASA Astrophysics Data System (ADS)

Mladenova, I. E.; Crow, W. T.; Teng, W. L.; Doraiswamy, P.

2010-12-01

Crop yield in crop production models is simulated as a function of weather, ground conditions and management practices and it is driven by the amount of nutrients, heat and water availability in the root-zone. It has been demonstrated that assimilation of satellite-derived soil moisture data has the potential to improve the model root-zone soil water (RZSW) information. However, the satellite estimates represent the moisture conditions of the top 3 cm to 5 cm of the soil profile depending on system configuration and surface conditions (i.e. soil wetness, density of the canopy cover, etc). The propagation of this superficial information throughout the profile will depend on the model physics. In an Ensemble Kalman Filter (EnKF) data assimilation system, as the one examined here, the update of each soil layer is done through the Kalman Gain, K. K is a weighing factor that determines how much correction will be performed on the forecasts. Furthermore, K depends on the strength of the correlation between the surface and the root-zone soil moisture; the stronger this correlation is, the more observations will impact the analysis. This means that even if the satellite-derived product has higher sensitivity and accuracy as compared to the model estimates, the improvement of the RZSW will be negligible if the surface-root zone coupling is weak, where the later is determined by the model subsurface physics. This research examines: (1) the strength of the vertical coupling in the Environmental Policy Integrated Climate (EPIC) model over corn and soybeans covered fields in Iowa, US, (2) the potential to improve EPIC RZSW information through assimilation of satellite soil moisture data derived from the Advanced Microwave Scanning Radiometer (AMSR-E) and (3) the impact of the vertical coupling on the EnKF performance.

Root-endophytes improve the ecophysiological performance and production of an agricultural species under drought condition

PubMed Central

Molina-Montenegro, Marco A.; Oses, Rómulo; Torres-Díaz, Cristian; Atala, Cristian; Zurita-Silva, Andrés; Ruiz-Lara, Simón

2016-01-01

Throughout many regions of the world, climate change has limited the availability of water for irrigating crops. Indeed, current models of climate change predict that arid and semi-arid zones will be places where precipitation will drastically decrease. In this context, plant root-associated fungi appear as a new strategy to improve ecophysiological performance and yield of crops under abiotic stress. Thus, use of fungal endophytes from ecosystems currently subjected to severe drought conditions could improve the ecophysiological performance and quantum yield of crops exposed to drought. In this study, we evaluated how the inoculation of fungal endophytes isolated from Antarctic plants can improve the net photosynthesis, water use efficiency and production of fresh biomass in a lettuce cultivar, grown under different water availability regimes. In addition, we assessed if the presence of biochemical mechanisms and gene expression related with environmental tolerance are improved in presence of fungal endophytes. Overall, those individuals with presence of endophytes showed higher net photosynthesis and maintained higher water use efficiency in drought conditions, which was correlated with greater fresh and dry biomass production as well as greater root system development. In addition, presence of fungal endophytes was correlated with a higher proline concentration, lower peroxidation of lipids and up-/down-regulation of ion homeostasis. Our results suggest that presence of fungal endophytes could minimize the negative effect of drought by improving drought tolerance through biochemical mechanisms and improving nutritional status. Thus, root-endophytes might be a successful biotechnological tool to maintain high levels of ecophysiological performance and productivity in zones under drought. PMID:27613875

Evaluation of Crop-Water Consumption Simulation to Support Agricultural Water Resource Management using Satellite-based Water Cycle Observations

NASA Astrophysics Data System (ADS)

Gupta, M.; Bolten, J. D.; Lakshmi, V.

2016-12-01

Water scarcity is one of the main factors limiting agricultural development. Numerical models integrated with remote sensing datasets are increasingly being used operationally as inputs for crop water balance models and agricultural forecasting due to increasing availability of high temporal and spatial resolution datasets. However, the model accuracy in simulating soil water content is affected by the accuracy of the soil hydraulic parameters used in the model, which are used in the governing equations. However, soil databases are known to have a high uncertainty across scales. Also, for agricultural sites, the in-situ measurements of soil moisture are currently limited to discrete measurements at specific locations, and such point-based measurements do not represent the spatial distribution at a larger scale accurately, as soil moisture is highly variable both spatially and temporally. The present study utilizes effective soil hydraulic parameters obtained using a 1-km downscaled microwave remote sensing soil moisture product based on the NASA Advanced Microwave Scanning Radiometer (AMSR-E) using the genetic algorithm inverse method within the Catchment Land Surface Model (CLSM). Secondly, to provide realistic irrigation estimates for agricultural sites, an irrigation scheme within the land surface model is triggered when the root-zone soil moisture deficit reaches the threshold, 50% with respect to the maximum available water capacity obtained from the effective soil hydraulic parameters. An additional important criterion utilized is the estimation of crop water consumption based on dynamic root growth and uptake in root zone layer. Model performance is evaluated using MODIS land surface temperature (LST) product. The soil moisture estimates for the root zone are also validated with the in situ field data, for three sites (2- irrigated and 1- rainfed) located at the University of Nebraska Agricultural Research and Development Center near Mead, NE and monitored by three AmeriFlux installations (Verma et al., 2005).

Field experiment with liquid manure and enhanced biochar

NASA Astrophysics Data System (ADS)

Dunst, Gerald

2017-04-01

Field experiments with low amounts of various liquid manure enhanced biochars. In 2016 a new machine was developed to inject liquid biochar based fertilizer directly into the crop root zone. A large-scale field experiment with corn and oil seed pumpkin was set-up on 42 hectares on 15 different fields in the south East of Austria. Three treatments were compared: (1) surface spreading of liquid manure as control (common practice), (2) 20 cm deep root zone injection with same amount of liquid manure, and (3) 20 cm deep root zone injection with same amount of liquid manure mixed with 1 to 2 tons of various nutrient enhanced biochars. The biochar were quenched with the liquid phase from a separated digestate from a biogas plant (feedstock: cow manure). From May to October nitrate and ammonium content was analyzed monthly from 0-30cm and 30-60cm soil horizons. At the end of the growing season the yield was determined. The root zone injection of the liquid manure reduced the nitrate content during the first two months at 13-16% compared to the control. When the liquid manure was blended with biochar, Nitrate soil content was lowest (reduction 40-47%). On average the root zone injection of manure-biochar increased the yield by 7% compared to the surface applied control and 3% compared to the root zone injected manure without biochar. The results shows, that biochar is able to reduce the Nitrate load in soils and increase the yield of corn at the same time. The nutrient efficiency of organic liquid fertilizers can be increased.

Grafting cucumber onto luffa improves drought tolerance by increasing ABA biosynthesis and sensitivity

PubMed Central

Liu, Shanshan; Li, Hao; Lv, Xiangzhang; Ahammed, Golam Jalal; Xia, Xiaojian; Zhou, Jie; Shi, Kai; Asami, Tadao; Yu, Jingquan; Zhou, Yanhong

2016-01-01

Balancing stomata-dependent CO2 assimilation and transpiration is a key challenge for increasing crop productivity and water use efficiency under drought stress for sustainable crop production worldwide. Here, we show that cucumber and luffa plants with luffa as rootstock have intrinsically increased water use efficiency, decreased transpiration rate and less affected CO2 assimilation capacity following drought stress over those with cucumber as rootstock. Drought accelerated abscisic acid (ABA) accumulation in roots, xylem sap and leaves, and induced the transcript of ABA signaling genes, leading to a decreased stomatal aperture and transpiration in the plants grafted onto luffa roots as compared to plants grafted onto cucumber roots. Furthermore, stomatal movement in the plants grafted onto luffa roots had an increased sensitivity to ABA. Inhibition of ABA biosynthesis in luffa roots decreased the drought tolerance in cucumber and luffa plants. Our study demonstrates that the roots of luffa have developed an enhanced ability to sense the changes in root-zone moisture and could eventually deliver modest level of ABA from roots to shoots that enhances water use efficiency under drought stress. Such a mechanism could be greatly exploited to benefit the agricultural production especially in arid and semi-arid areas. PMID:26832070

A Thermal-based Two-Source Energy Balance Model for Estimating Evapotranspiration over Complex Canopies

USDA-ARS?s Scientific Manuscript database

Land surface temperature (LST) provides valuable information for quantifying root-zone water availability, evapotranspiration (ET) and crop condition as well as providing useful information for constraining prognostic land surface models. This presentation describes a robust but relatively simple LS...

Spatio-temporal Root Zone Soil Moisture Estimation for Indo - Gangetic Basin from Satellite Derived (AMSR-2 and SMOS) Surface Soil Moisture

NASA Astrophysics Data System (ADS)

Sure, A.; Dikshit, O.

2017-12-01

Root zone soil moisture (RZSM) is an important element in hydrology and agriculture. The estimation of RZSM provides insight in selecting the appropriate crops for specific soil conditions (soil type, bulk density, etc.). RZSM governs various vadose zone phenomena and subsequently affects the groundwater processes. With various satellite sensors dedicated to estimating surface soil moisture at different spatial and temporal resolutions, estimation of soil moisture at root zone level for Indo - Gangetic basin which inherits complex heterogeneous environment, is quite challenging. This study aims at estimating RZSM and understand its variation at the level of Indo - Gangetic basin with changing land use/land cover, topography, crop cycles, soil properties, temperature and precipitation patterns using two satellite derived soil moisture datasets operating at distinct frequencies with different principles of acquisition. Two surface soil moisture datasets are derived from AMSR-2 (6.9 GHz - `C' Band) and SMOS (1.4 GHz - `L' band) passive microwave sensors with coarse spatial resolution. The Soil Water Index (SWI), accounting for soil moisture from the surface, is derived by considering a theoretical two-layered water balance model and contributes in ascertaining soil moisture at the vadose zone. This index is evaluated against the widely used modelled soil moisture dataset of GLDAS - NOAH, version 2.1. This research enhances the domain of utilising the modelled soil moisture dataset, wherever the ground dataset is unavailable. The coupling between the surface soil moisture and RZSM is analysed for two years (2015-16), by defining a parameter T, the characteristic time length. The study demonstrates that deriving an optimal value of T for estimating SWI at a certain location is a function of various factors such as land, meteorological, and agricultural characteristics.

Plant Growth Research for Food Production: Development and Testing of Expandable Tuber Growth Module

NASA Technical Reports Server (NTRS)

Cordova, Brennan A.

2017-01-01

Controlled and reliable growth of a variety of vegetable crops is an important capability for manned deep space exploration systems for providing nutritional supplementation and psychological benefits to crew members. Because current systems have been limited to leafy vegetables that require minimal root space, a major goal for these systems is to increase their ability to grow new types of crops, including tuber plants and root vegetables that require a large root space. An expandable root zone module and housing was developed to integrate this capability into the Vegetable Production System (Veggie). The expandable module uses a waterproof, gas-permeable bag with a structure that allows for root space to increase vertically throughout the growth cycle to accommodate for expanding tuber growth, while minimizing the required media mass. Daikon radishes were chosen as an ideal tuber crop for their subterraneous tuber size and rapid growth cycle, and investigations were done to study expanding superabsorbent hydrogels as a potential growth media. These studies showed improved water retention, but restricted oxygen availability to roots with pure gel media. It was determined that these hydrogels could be integrated in lower proportions into standard soil to achieve media expansion and water retention desired. Using the constructed module prototype and ideal gel and soil media mixture, daikon radishes are being grown in the system to test the capability and success of the system through a full growth cycle.

Plant Growth Research for Food Production: Development and Testing of Expandable Tuber Growth Module

NASA Technical Reports Server (NTRS)

Cordova, Brennan A.

2017-01-01

Controlled and reliable growth of a variety of vegetable crops is an important capability for manned deep space exploration systems for providing nutritional supplementation and psychological benefits to crew members. Because current systems have been limited to leafy vegetables that require minimal root space, a major goal for these systems is to increase their ability to grow new types of crops, including tuber plants and root vegetables that require a large root space. An expandable root zone module and housing was developed to integrate this capability into the Veggie growth system. The expandable module uses a waterproof, gas-permeable bag with a structure that allows for root space to increase vertically throughout the growth cycle to accommodate for expanding tuber growth, while minimizing the required media mass. Daikon radishes were chosen as an ideal tuber crop for their subterraneous tuber size and rapid growth cycle, and investigations were done to study expanding superabsorbent hydrogels as a potential growth media. These studies showed improved water retention, but restricted oxygen availability to roots with pure gel media. It was determined that these hydrogels could be integrated in lower proportions into standard soil to achieve media expansion and water retention desired. Using the constructed module prototype and ideal gel and soil media mixture, Daikon radishes were grown in the system to test the capability and success of the system through a full growth cycle.

A thermal-based remote sensing modeling system for estimating daily evapotranspiration from field to global scales

USDA-ARS?s Scientific Manuscript database

Thermal-infrared (TIR) remote sensing of land surface temperature (LST) provides valuable information for quantifying root-zone water availability, evapotranspiration (ET) and crop condition as well as providing useful information for constraining prognostic land surface models. This presentation d...

Moving forward on remote sensing of soil salinity at regional scale

USDA-ARS?s Scientific Manuscript database

Soil salinity undermines global agriculture by reducing crop yield and soil quality. Irrigation management can help control salinity levels within the root-zone. To best allocate water resources, accurate regional-scale inventories are needed. Two remote sensing approaches are currently used to moni...

Airborne and ground-based remote sensing for the estimation of evapotranspiration and yield of bean, potato, and sugar beet crops

NASA Astrophysics Data System (ADS)

Jayanthi, Harikishan

The focus of this research was two-fold: (1) extend the reflectance-based crop coefficient approach to non-grain (potato and sugar beet), and vegetable crops (bean), and (2) develop vegetation index (VI)-yield statistical models for potato and sugar beet crops using high-resolution aerial multispectral imagery. Extensive crop biophysical sampling (leaf area index and aboveground dry biomass sampling) and canopy reflectance measurements formed the backbone of developing of canopy reflectance-based crop coefficients for bean, potato, and sugar beet crops in this study. Reflectance-based crop coefficient equations were developed for the study crops cultivated in Kimberly, Idaho, and subsequently used in water availability simulations in the plant root zone during 1998 and 1999 seasons. The simulated soil water profiles were compared with independent measurements of actual soil water profiles in the crop root zone in selected fields. It is concluded that the canopy reflectance-based crop coefficient technique can be successfully extended to non-grain crops as well. While the traditional basal crop coefficients generally expect uniform growth in a region the reflectance-based crop coefficients represent the actual crop growth pattern (in less than ideal water availability conditions) in individual fields. Literature on crop canopy interactions with sunlight states that there is a definite correspondence between leaf area index progression in the season and the final yield. In case of crops like potato and sugar beet, the yield is influenced not only on how early and how quickly the crop establishes its canopy but also on how long the plant stands on the ground in a healthy state. The integrated area under the crop growth curve has shown excellent correlations with hand-dug samples of potato and sugar beet crops in this research. Soil adjusted vegetation index-yield models were developed, and validated using multispectral aerial imagery. Estimated yield images were compared with the actual yields extracted from the ground. The remote sensing-derived yields compared well with the actual yields sampled on the ground. This research has highlighted the importance of the date of spectral emergence, the need to know the duration for which the crops stand on the ground, and the need to identify critical periods of time when multispectral coverages are essential for reliable tuber yield estimation.

Functional homogeneous zones (fHZs) in viticultural zoning procedure: an Italian case study on Aglianico vine

NASA Astrophysics Data System (ADS)

Bonfante, A.; Agrillo, A.; Albrizio, R.; Basile, A.; Buonomo, R.; De Mascellis, R.; Gambuti, A.; Giorio, P.; Guida, G.; Langella, G.; Manna, P.; Minieri, L.; Moio, L.; Siani, T.; Terribile, F.

2015-06-01

This paper aims to test a new physically oriented approach to viticulture zoning at farm scale that is strongly rooted in hydropedology and aims to achieve a better use of environmental features with respect to plant requirements and wine production. The physics of our approach are defined by the use of soil-plant-atmosphere simulation models, applying physically based equations to describe the soil hydrological processes and solve soil-plant water status. This study (part of the ZOVISA project) was conducted on a farm devoted to production of high-quality wines (Aglianico DOC), located in southern Italy (Campania region, Mirabella Eclano, AV). The soil spatial distribution was obtained after standard soil survey informed by geophysical survey. Two homogeneous zones (HZs) were identified; in each one a physically based model was applied to solve the soil water balance and estimate the soil functional behaviour (crop water stress index, CWSI) defining the functional homogeneous zones (fHZs). For the second process, experimental plots were established and monitored for investigating soil-plant water status, crop development (biometric and physiological parameters) and daily climate variables (temperature, solar radiation, rainfall, wind). The effects of crop water status on crop response over must and wine quality were then evaluated in the fHZs. This was performed by comparing crop water stress with (i) crop physiological measurement (leaf gas exchange, chlorophyll a fluorescence, leaf water potential, chlorophyll content, leaf area index (LAI) measurement), (ii) grape bunches measurements (berry weight, sugar content, titratable acidity, etc.) and (iii) wine quality (aromatic response). This experiment proved the usefulness of the physically based approach, also in the case of mapping viticulture microzoning.

Salt and N leaching and soil accumulation due to cover cropping practices

NASA Astrophysics Data System (ADS)

Gabriel, J. L.; Quemada, M.

2012-04-01

Nitrate leaching beyond the root zone can increase water contamination hazards and decrease crop available N. Cover crops used in spite of fallow are an alternative to reduce nitrate contamination in the vadose zone, because reducing drainage and soil mineral N accumulation. Cover crops can improve important characteristics in irrigated land as water retention capacity or soil aggregate stability. However, increasing evapotranspiration and consequent drainage below the root system reduction, could lead to soil salt accumulation. Salinity affects more than 80 million ha of arable land in many areas of the world, and one of the principal causes for yield reduction and even land degradation in the Mediterranean region. Few studies dealt with both problems at the same time. Therefore, it is necessary a long-term evaluation of the potential effect on soil salinity and nitrate leaching, in order to ensure that potential disadvantages that could originate from soil salt accumulation are compensated with all advantages of cover cropping. A study of the soil salinity and nitrate leaching was conducted during 4 years in a semiarid irrigated agricultural area of Central Spain. Three treatments were studied during the intercropping period of maize (Zea mays L.): barley (Hordeum vulgare L.), vetch (Vicia villosa L.) and fallow. Cover crops were killed in March allowing seeding of maize of the entire trial in April, and all treatments were irrigated and fertilised following the same procedure. Before sowing, and after harvesting maize and cover crops, soil salt and nitrate accumulation was determined along the soil profile. Soil analysis was conducted at six depths every 0.20 m in each plot in samples from four 0 to 1.2-m depth holes dug. The electrical conductivity of the saturated paste extract and soil mineral nitrogen was measured in each soil sample. A numerical model based on the Richards water balance equation was applied in order to calculate drainage at 1.2 m depth, using daily soil water content measurements, based on calibrated capacitance probes. Our results showed that drainage during the irrigated period was minimized, because irrigation water was adjusted to crop needs, leading to soil salt and nitrate accumulation on the upper layers after maize harvest. Then, during the intercrop period, most of salt and nitrate leaching occurred. Cover crops use led to shorter drainage period, lower drainage water amount and lower nitrate and salt leaching than treatment with fallow. These effects were related with a larger nitrate accumulation in the upper layers of the soil after cover crop treatments. But there was not soil salt accumulation increase in treatments with cover crops, and even decreased after years with a large cover crop biomass production. Then, adoption of cover crops in this kind of irrigated cropping system reduced water drainage beyond the root zone, salt and nitrate leaching diminished as a consequence but did not lead to salt accumulation in the upper soil layers. Acknowledgements: Financial support by CICYT, Spain (ref. AGL2005-00163 and AGL 2011-24732) and Comunidad de Madrid (project AGRISOST, S2009/AGR-1630).

An in situ approach to detect tree root ecology: linking ground-penetrating radar imaging to isotope-derived water acquisition zones

PubMed Central

Isaac, Marney E; Anglaaere, Luke C N

2013-01-01

Tree root distribution and activity are determinants of belowground competition. However, studying root response to environmental and management conditions remains logistically challenging. Methodologically, nondestructive in situ tree root ecology analysis has lagged. In this study, we tested a nondestructive approach to determine tree coarse root architecture and function of a perennial tree crop, Theobroma cacao L., at two edaphically contrasting sites (sandstone and phyllite–granite derived soils) in Ghana, West Africa. We detected coarse root vertical distribution using ground-penetrating radar and root activity via soil water acquisition using isotopic matching of δ18O plant and soil signatures. Coarse roots were detected to a depth of 50 cm, however, intraspecifc coarse root vertical distribution was modified by edaphic conditions. Soil δ18O isotopic signature declined with depth, providing conditions for plant–soil δ18O isotopic matching. This pattern held only under sandstone conditions where water acquisition zones were identifiably narrow in the 10–20 cm depth but broader under phyllite–granite conditions, presumably due to resource patchiness. Detected coarse root count by depth and measured fine root density were strongly correlated as were detected coarse root count and identified water acquisition zones, thus validating root detection capability of ground-penetrating radar, but exclusively on sandstone soils. This approach was able to characterize trends between intraspecific root architecture and edaphic-dependent resource availability, however, limited by site conditions. This study successfully demonstrates a new approach for in situ root studies that moves beyond invasive point sampling to nondestructive detection of root architecture and function. We discuss the transfer of such an approach to answer root ecology questions in various tree-based landscapes. PMID:23762519

Quantification of the impact of hydrology on agricultural production as a result of too dry, too wet or too saline conditions

NASA Astrophysics Data System (ADS)

Hack-ten Broeke, Mirjam J. D.; Kroes, Joop G.; Bartholomeus, Ruud P.; van Dam, Jos C.; de Wit, Allard J. W.; Supit, Iwan; Walvoort, Dennis J. J.; van Bakel, P. Jan T.; Ruijtenberg, Rob

2016-08-01

For calculating the effects of hydrological measures on agricultural production in the Netherlands a new comprehensive and climate proof method is being developed: WaterVision Agriculture (in Dutch: Waterwijzer Landbouw). End users have asked for a method that considers current and future climate, that can quantify the differences between years and also the effects of extreme weather events. Furthermore they would like a method that considers current farm management and that can distinguish three different causes of crop yield reduction: drought, saline conditions or too wet conditions causing oxygen shortage in the root zone. WaterVision Agriculture is based on the hydrological simulation model SWAP and the crop growth model WOFOST. SWAP simulates water transport in the unsaturated zone using meteorological data, boundary conditions (like groundwater level or drainage) and soil parameters. WOFOST simulates crop growth as a function of meteorological conditions and crop parameters. Using the combination of these process-based models we have derived a meta-model, i.e. a set of easily applicable simplified relations for assessing crop growth as a function of soil type and groundwater level. These relations are based on multiple model runs for at least 72 soil units and the possible groundwater regimes in the Netherlands. So far, we parameterized the model for the crops silage maize and grassland. For the assessment, the soil characteristics (soil water retention and hydraulic conductivity) are very important input parameters for all soil layers of these 72 soil units. These 72 soil units cover all soils in the Netherlands. This paper describes (i) the setup and examples of application of the process-based model SWAP-WOFOST, (ii) the development of the simplified relations based on this model and (iii) how WaterVision Agriculture can be used by farmers, regional government, water boards and others to assess crop yield reduction as a function of groundwater characteristics or as a function of the salt concentration in the root zone for the various soil types.

Researching Seeds: Films, Sanitation Methods, Microbiological Growth, Viability, and Selection for New Crops

NASA Technical Reports Server (NTRS)

Padgett, Niki; Smith, Trent

2018-01-01

A major factor in long-term human exploration of the solar system is crop growth in microgravity. Space crops can provide fresh, nutritious food to supplement diets for astronauts. Important factors impacting space plant growth and consumption are water delivery to root zone in microgravity, sanitation methods for microbiological safety, plant responses to light quality/spectrum, and identifying optimal edible plants suitable for growth on the International Space Station (ISS). Astronauts growing their own food on the ISS provides necessary data for crop production for long duration deep space missions. The seed film project can be used in Advanced Plant Habitat and Veggies that are currently being utilized on the ISS.

A new automated passive capillary lysimeter for logging real-time drainage water fluxes

USDA-ARS?s Scientific Manuscript database

Effective monitoring of chemical transport through the soil profile requires accurate and appropriate instrumentation to measure drainage water fluxes below the root zone of cropping system. The objectives of this study were to methodically describe in detail the construction and installation of a n...

Wireless lysimeters for real-time online soil water monitoring

USDA-ARS?s Scientific Manuscript database

Identification of nitrate-nitrogen (NO3-N) in drainage water allows accessing the effectiveness of water quality management. A passive capillary wick-type lysimeter (PCAPs) was used to monitor water flux and NO3-N leached below the root zone under an irrigated cropping system. Wireless lysimeters we...

Precipitation, irrigation and crop growth signals in COSMOS data

USDA-ARS?s Scientific Manuscript database

Soil water sensors are used to characterize water content in the root zone and below for water management and environmental monitoring, but only a few are capable of sensing soil volumes larger than a few hundred liters. Scientists with the USDA-ARS Conservation & Production Research Laboratory, Bus...

A thermal-based remote sensing modeling system for estimating evapotranspiration from field to global scales

USDA-ARS?s Scientific Manuscript database

Thermal-infrared remote sensing of land surface temperature provides valuable information for quantifying root-zone water availability, evapotranspiration (ET) and crop condition. This paper describes a robust but relatively simple thermal-based energy balance model that parameterizes the key soil/s...

Ten Years of Plant Pathology Research at the Cook Agronomy Farm: What Have We Learned?

USDA-ARS?s Scientific Manuscript database

The Cook Agronomy Farm has provided important information for understanding root diseases under directseeded conditions in the higher rainfall annual cropping zones of the Palouse, at a landscape scale. This farm has served as an important outdoor laboratory to test disease management techniques suc...

COSMOS soil water sensing affected by crop biomass and water status

USDA-ARS?s Scientific Manuscript database

Soil water sensing methods are widely used to characterize water content in the root zone and below, but only a few are capable of sensing soil volumes larger than a few hundred liters. Scientists with the USDA-ARS Conservation & Production Research Laboratory, Bushland, Texas, evaluated: a) the Cos...

An Efficient Method for Adventitious Root Induction from Stem Segments of Brassica Species

PubMed Central

Srikanth, Sandhya; Choong, Tsui Wei; Yan, An; He, Jie; Chen, Zhong

2016-01-01

Plant propagation via in vitro culture is a very laborious and time-consuming process. The growth cycle of some of the crop species is slow even in the field and the consistent commercial production is hard to maintain. Enhanced methods of reduced cost, materials and labor significantly impact the research and commercial production of field crops. In our studies, stem-segment explants of Brassica species were found to generate adventitious roots (AR) in aeroponic systems in less than a week. As such, the efficiency of rooting from stem explants of six cultivar varieties of Brassica spp was tested without using any plant hormones. New roots and shoots were developed from Brassica alboglabra (Kai Lan), B. oleracea var. acephala (purple kale), B. rapa L. ssp. chinensis L (Pai Tsai, Nai Bai C, and Nai Bai T) explants after 3 to 5 days of growing under 20 ± 2°C cool root zone temperature (C-RZT) and 4 to 7 days in 30 ± 2°C ambient root zone temperature (A-RZT). At the base of cut end, anticlinal and periclinal divisions of the cambial cells resulted in secondary xylem toward pith and secondary phloem toward cortex. The continuing mitotic activity of phloem parenchyma cells led to a ring of conspicuous white callus. Root initials formed from the callus which in turn developed into ARs. However, B. rapa var. nipposinica (Mizuna) explants were only able to root in C-RZT. All rooted explants were able to develop into whole plants, with higher biomass obtained from plants that grown in C-RZT. Moreover, explants from both RZTs produced higher biomass than plants grown from seeds (control plants). Rooting efficiency was affected by RZTs and explant cuttings of donor plants. Photosynthetic CO2 assimilation rate (Asat) and stomatal conductance (gssat) were significantly differentiated between plants derived from seeds and explants at both RZTs. All plants in A-RZT had highest transpiration rates. PMID:27446170

Enhancing the USDA Global Crop Assessment Decision Support System Using SMAP Soil Moisture Data

NASA Astrophysics Data System (ADS)

Bolten, J. D.; Mladenova, I. E.; Crow, W. T.; Reynolds, C. A.

2016-12-01

The Foreign Agricultural Services (FAS) is a subdivision of U.S. Department of Agriculture (USDA) that is in charge with providing information on current and expected crop supply and demand estimates. Knowledge of the amount of water in the root zone is an essential source of information for the crop analysts as it governs the crop development and crop growth, which in turn determine the end-of-season yields. USDA FAS currently relies on root zone soil moisture (RZSM) estimates generated using the modified two-layer Palmer Model (PM). PM is a simple water-balance hydrologic model that is driven by daily precipitation observations and minimum and maximum temperature data. These forcing data are based on ground meteorological station measurements from the World Meteorological Organization (WMO), and gridded weather data from the former U.S. Air Force Weather Agency (AFWA), currently called U.S. Air Force 557th Weather Wing. The PM was extended by adding a data assimilation (DA) unit that provides the opportunity to routinely ingest satellite-based soil moisture observations. This allows us to adjust for precipitation-related inaccuracies and enhance the quality of the PM soil moisture estimates. The current operational DA system is based on a 1-D Ensample Kalman Filter approach and relies on observations obtained from the Soil Moisture Ocean Salinity Mission (SMOS). Our talk will demonstrate the value of assimilating two satellite products (i.e. a passive and active) and discuss work that is done in preparation for ingesting soil moisture observations from the Soil Moisture Active Passive (SMAP) mission.

Root Zone Sensors for Irrigation Management in Intensive Agriculture

PubMed Central

Pardossi, Alberto; Incrocci, Luca; Incrocci, Giorgio; Malorgio, Fernando; Battista, Piero; Bacci, Laura; Rapi, Bernardo; Marzialetti, Paolo; Hemming, Jochen; Balendonck, Jos

2009-01-01

Crop irrigation uses more than 70% of the world’s water, and thus, improving irrigation efficiency is decisive to sustain the food demand from a fast-growing world population. This objective may be accomplished by cultivating more water-efficient crop species and/or through the application of efficient irrigation systems, which includes the implementation of a suitable method for precise scheduling. At the farm level, irrigation is generally scheduled based on the grower’s experience or on the determination of soil water balance (weather-based method). An alternative approach entails the measurement of soil water status. Expensive and sophisticated root zone sensors (RZS), such as neutron probes, are available for the use of soil and plant scientists, while cheap and practical devices are needed for irrigation management in commercial crops. The paper illustrates the main features of RZS’ (for both soil moisture and salinity) marketed for the irrigation industry and discusses how such sensors may be integrated in a wireless network for computer-controlled irrigation and used for innovative irrigation strategies, such as deficit or dual-water irrigation. The paper also consider the main results of recent or current research works conducted by the authors in Tuscany (Italy) on the irrigation management of container-grown ornamental plants, which is an important agricultural sector in Italy. PMID:22574047

Nitrogen fluxes through unsaturated zones in five agricultural settings across the USA

NASA Astrophysics Data System (ADS)

Green, C. T.; Fisher, L. H.; Bekins, B. A.

2006-12-01

The main controls on nitrogen (N) fluxes between the root zone and the water table were determined for agricultural sites in California, Washington, Nebraska, Indiana, and Maryland in 2004 and 2005. Sites included irrigated and non-irrigated fields; soil textures ranging from clay to sand; crops including corn, soybeans, almonds, and pasture; and unsaturated zone thicknesses ranging from 0.5 to 20 m. Chemical analyses of water from lysimeters, shallow wells, and sediment cores indicate that advective transport of nitrate is the dominant process affecting the rate of N transport below the root zone. Vertical profiles of (1) N species, (2) stable N and O isotopes, and (3) oxygen gas in unsaturated zone air and shallow ground water, and correlations between N and other agricultural chemicals indicate that reactions do not greatly affect N concentrations between the root zone and the capillary fringe. Relatively stable concentrations at depths greater than a few meters allow calculation of nitrogen fluxes to the saturated zone. These fluxes are equivalent to 14 - 64% of the N application rates. At the same locations, median vertical fluxes of N in ground water are generally lower, ranging from 4 - 37% of N application rates. The lower nitrate fluxes in ground water reflect processes including lateral flow to tile drains and denitrification in the capillary fringe, as well as historical changes in N inputs.

A plant culture system for producing food and recycling materials with sweetpotato in space

NASA Astrophysics Data System (ADS)

Kitaya, Yoshiaki; Yano, Sachiko; Hirai, Hiroaki

2016-07-01

The long term human life support in space is greatly dependent on the amounts of food, atmospheric O2 and clean water produced by plants. Therefore, the bio-regenerative life support system such as space farming with scheduling of crop production, obtaining high yields with a rapid turnover rate, converting atmospheric CO2 to O2 and purifying water should be established with employing suitable plant species and varieties and precisely controlling environmental variables around plants grown at a high density in a limited space. We are developing a sweetpotato culture system for producing tuberous roots as a high-calorie food and fresh edible leaves and stems as a nutritive functional vegetable food in space. In this study, we investigated the ability of food production, CO2 to O2 conversion through photosynthesis, and clean water production through transpiration in the sweetpotato production system. The biomass of edible parts in the whole plant was almost 100%. The proportion of the top (leaves and stems) and tuberous roots was strongly affected by environmental variables even when the total biomass production was mostly the same. The production of biomass and clean water was controllable especially by light, atmospheric CO2 and moisture and gas regimes in the root zone. It was confirmed that sweetpotato can be utilized for the vegetable crop as well as the root crop allowing a little waste and is a promising functional crop for supporting long-duration human activity in space.

Modeling yield and biomass responses of maize cultivars to climate change under full and deficit irrigation

USDA-ARS?s Scientific Manuscript database

As climate change becomes inevitable, the agricultural community is concerned about its possible effects on crop production and developing strategies to adapt to this change. In this study, the Root Zone Water Quality Model (RZWQM2) was calibrated with four years of maize data from central Colorado ...

Diversity Arrays Technology (DArT) platform for genotyping and mapping in carrot (Daucus carota L.)

USDA-ARS?s Scientific Manuscript database

Carrot is one of the most important root vegetable crops grown worldwide on more than one million hectares. Its progenitor, wild Daucus carota, is a weed commonly occurring across continents in the temperate climatic zone. Diversity Array Technology (DArT) is a microarray-based molecular marker syst...

Microbial Community Dynamics and Response to Plant Growth-Promoting Microorganisms in the Rhizosphere of Four Common Food Crops Cultivated in Hydroponics.

PubMed

Sheridan, C; Depuydt, P; De Ro, M; Petit, C; Van Gysegem, E; Delaere, P; Dixon, M; Stasiak, M; Aciksöz, S B; Frossard, E; Paradiso, R; De Pascale, S; Ventorino, V; De Meyer, T; Sas, B; Geelen, D

2017-02-01

Plant growth promoting microorganisms (PGPMs) of the plant root zone microbiome have received limited attention in hydroponic cultivation systems. In the framework of a project aimed at the development of a biological life support system for manned missions in space, we investigated the effects of PGPMs on four common food crops (durum and bread wheat, potato and soybean) cultivated in recirculating hydroponic systems for a whole life cycle. Each crop was inoculated with a commercial PGPM mixture and the composition of the microbial communities associated with their root rhizosphere, rhizoplane/endosphere and with the recirculating nutrient solution was characterised through 16S- and ITS-targeted Illumina MiSeq sequencing. PGPM addition was shown to induce changes in the composition of these communities, though these changes varied both between crops and over time. Microbial communities of PGPM-treated plants were shown to be more stable over time. Though additional development is required, this study highlights the potential benefits that PGPMs may confer to plants grown in hydroponic systems, particularly when cultivated in extreme environments such as space.

Regulation of nitrogen uptake and assimilation: Effects of nitrogen source, root-zone pH, and aerial CO2 concentration on growth and productivity of soybeans

NASA Technical Reports Server (NTRS)

Raper, C. D.; Tolley-Henry, L.

1989-01-01

An important feature of controlled-environment crop production systems such as those to be used for life support of crews during space exploration is the efficient utilization of nitrogen supplies. Making decisions about the best sources of these supplies requires research into the relationship between nitrogen source and the physiological processes which regulate vegetative and reproductive plant growth. Work done in four areas within this research objective is reported: (1) experiments on the effects of root-zone pH on preferential utilization of NO3(-) versus NH4(+) nitrogen; (2) investigation of processes at the whole-plant level that regulate nitrogen uptake; (3) studies of the effects of atmospheric CO2 and NO3(-) supply on the growth of soybeans; and (4) examination of the role of NO3(-) uptake in enhancement of root respiration.

Use of small scale electrical resistivity tomography to identify soil-root interactions during deficit irrigation

NASA Astrophysics Data System (ADS)

Vanella, D.; Cassiani, G.; Busato, L.; Boaga, J.; Barbagallo, S.; Binley, A.; Consoli, S.

2018-01-01

Plant roots activity affect the exchanges of mass and energy between the soil and atmosphere. However, it is challenging to monitor the activity of the root-zone because roots are not visible from the soil surface, and root systems undergo spatial and temporal variations in response to internal and external conditions. Therefore, measurements of the activity of root systems are interesting to ecohydrologists in general, and are especially important for specific applications, such as irrigation water management. This study demonstrates the use of small scale three-dimensional (3-D) electrical resistivity tomography (ERT) to monitor the root-zone of orange trees irrigated by two different regimes: (i) full rate, in which 100% of the crop evapotranspiration (ETc) is provided; and (ii) partial root-zone drying (PRD), in which 50% of ETc is supplied to alternate sides of the tree. We performed time-lapse 3-D ERT measurements on these trees from 5 June to 24 September 2015, and compared the long-term and short-term changes before, during, and after irrigation events. Given the small changes in soil temperature and pore water electrical conductivity, we interpreted changes of soil electrical resistivity from 3-D ERT data as proxies for changes in soil water content. The ERT results are consistent with measurements of transpiration flux and soil temperature. The changes in electrical resistivity obtained from ERT measurements in this case study indicate that root water uptake (RWU) processes occur at the 0.1 m scale, and highlight the impact of different irrigation schemes.

Effect of irrigation techniques and strategies on water footprint of growing crops

NASA Astrophysics Data System (ADS)

Chukalla, A. D.; Krol, M. S.; Hoekstra, A. Y. Y.

2014-12-01

Reducing the water footprint (WF) of growing crops, the largest water user and a significant contributor to the WF of many consumer products, plays a significant role in integrated and sustainable water management. The water footprint for growing crop is accounted by relating the crop yield with the corresponding consumptive water use (CWU), which both can be adjusted by measures that affect the crop growth and root-zone soil water balance. This study explored the scope for reducing the water footprint of irrigated crops by experimenting set of field level technical and managerial measures: (i) irrigation technologies (Furrow, sprinkler, drip and sub-surface drip), (ii) irrigation strategies (full and a range of sustained and controlled deficit) and (iii) field management options (zero, organic and synthetic mulching). Ranges of cases were also considered: (a) Arid and semi-arid environment (b) Loam and Sandy-loam soil types and (c) for Potato, Wheat and Maize crops; under (c) wet, normal and dry years. AquaCrop, the water driven crop growth and soil water balance model, offered the opportunity to systematically experiment these measures on water consumption and yield. Further, the green and blue water footprints of growing crop corresponding to each measure were computed by separating the root zone fluxes of the AquaCrop output into the green and blue soil water stocks and their corresponding fluxes. Results showed that in arid environment reduction in irrigation supply, CWU and WF up to 300 mm, 80 mm and 75 m3/tonne respectively can be achieved for Maize by a combination of organic mulching and drip technology with controlled deficit irrigation strategies (10-20-30-40% deficit with reference to the full irrigation requirement). These reductions come with a yield drop of 0.54 tonne/ha. In the same environment under the absence of mulching practice, the sub-surface drip perform better in reducing CWU and WF of irrigated crops followed by drip and furrow irrigation technique. This rank though changes in non-moisture limiting condition (wet year) drip performing better in reducing the WF of growing crops than sub-surface drip. It was observed that with all range of irrigation techniques, strategies and field management practices there is more room in reducing the WF of growing crops in loam than sandy-loam soil.

Impacts of Cover Crops on Water and Nutrient Dynamics in Agroecosystems

NASA Astrophysics Data System (ADS)

Williard, K.; Swanberg, S.; Schoonover, J.

2013-05-01

Intensive cropping systems of corn (Zea Mays L.) and soybeans (Glycine max) are commonly leaky systems with respect to nitrogen (N). Reactive N outputs from agroecosystems can contribute to eutrophication and hypoxic zones in downstream water bodies and greenhouse gas (N2O) emissions. Incorporating cover crops into temperate agroecosystem rotations has been promoted as a tool to increase nitrogen use efficiency and thus limit reactive N outputs to the environment. Our objective was determine how cereal rye (Secale cereal L.) and annual ryegrass (Lolium multiflorum) cover crops impact nutrient and soil water dynamics in an intensive corn and soybean cropping rotation in central Illinois. Cover crops were planted in mid to late October and terminated in early April prior to corn or soybean planting. In the spring just prior to cover crop termination, soil moisture levels were lower in the cover crop plots compared to no cover plots. This can be a concern for the subsequent crop in relatively dry years, which the Midwestern United States experienced in 2012. No cover plots had greater nutrient leaching below the rooting zone compared to cover crop areas, as expected. The cover crops were likely scavenging nutrients during the fall and early spring and should provide nutrients to the subsequent crop via decomposition and mineralization of the cover crop residue. Over the long term, cover crop systems should produce greater inputs and cycling of carbon and N, increasing the productivity of crops due to the long-term accumulation of soil organic matter. This study demonstrates that there may be short term trade-offs in reduced soil moisture levels that should be considered alongside the long term nutrient scavenging and recycling benefits of cover crops.

Crop yield monitoring in the Sahel using root zone soil moisture anomalies derived from SMOS soil moisture data assimilation

NASA Astrophysics Data System (ADS)

Gibon, François; Pellarin, Thierry; Alhassane, Agali; Traoré, Seydou; Baron, Christian

2017-04-01

West Africa is greatly vulnerable, especially in terms of food sustainability. Mainly based on rainfed agriculture, the high variability of the rainy season strongly impacts the crop production driven by the soil water availability in the soil. To monitor this water availability, classical methods are based on daily precipitation measurements. However, the raingauge network suffers from the poor network density in Africa (1/10000km2). Alternatively, real-time satellite-derived precipitations can be used, but they are known to suffer from large uncertainties which produce significant error on crop yield estimations. The present study proposes to use root soil moisture rather than precipitation to evaluate crop yield variations. First, a local analysis of the spatiotemporal impact of water deficit on millet crop production in Niger was done, from in-situ soil moisture measurements (AMMA-CATCH/OZCAR (French Critical Zone exploration network)) and in-situ millet yield survey. Crop yield measurements were obtained for 10 villages located in the Niamey region from 2005 to 2012. The mean production (over 8 years) is 690 kg/ha, and ranges from 381 to 872 kg/ha during this period. Various statistical relationships based on soil moisture estimates were tested, and the most promising one (R>0.9) linked the 30-cm soil moisture anomalies from mid-August to mid-September (grain filling period) to the crop yield anomalies. Based on this local study, it was proposed to derive regional statistical relationships using 30-cm soil moisture maps over West Africa. The selected approach was to use a simple hydrological model, the Antecedent Precipitation Index (API), forced by real-time satellite-based precipitation (CMORPH, PERSIANN, TRMM3B42). To reduce uncertainties related to the quality of real-time rainfall satellite products, SMOS soil moisture measurements were assimilated into the API model through a Particular Filter algorithm. Then, obtained soil moisture anomalies were compared to 17 years of crop yield estimates from the FAOSTAT database (1998-2014). Results showed that the 30-cm soil moisture anomalies explained 89% of the crop yield variation in Niger, 72% in Burkina Faso, 82% in Mali and 84% in Senegal.

Investigating the water balance of on-farm techniques for improved crop productivity in rainfed systems: A case study of Makanya catchment, Tanzania

NASA Astrophysics Data System (ADS)

Makurira, H.; Savenije, H. H. G.; Uhlenbrook, S.; Rockström, J.; Senzanje, A.

Water scarcity is a perennial problem in sub-Saharan agricultural systems where extreme rainfall events dominate agricultural seasons. Dry spell occurrences between and during seasons negatively impact on crop yields especially if such dry spells exceed 14 days. The impact of dry spells is felt more at smallholder farming scales where subsistence farming is the only source of livelihood for many households. This paper presents results from on-going research to improve rainfed water productivity in arid and semi-arid regions. The study site is the Makanya catchment in northern Tanzania where rainfall rarely exceeds 400 mm/season. Rainwater alone is not sufficient to support maize which is the preferred crop. The research introduced new soil and water conservation measures to promote water availability into the root zone. The introduced techniques include deep tillage, runoff diversion, fanya juus (infiltration trenches with bunds) and infiltration pits. The research aims at understanding the effectiveness of these interventions in increasing moisture availability within the root zone. Time domain reflectometry (TDR) was used to measure soil moisture twice weekly at 10 cm depth intervals up to depths of 2 m. Soil moisture fluctuated in the range 5-25% of volume with the beginning of the season recording the driest moisture levels and periods after good rainfall/runoff events recording the highest moisture levels. From the field observations made, a spreadsheet model was developed to simulate soil moisture variations during different maize growth stages. The results obtained show that the zones of greatest soil moisture concentrations are those around the trenches and bunds. Soil moisture is least at the centre of the plots. The study confirms the effectiveness of the introduced techniques to help concentrate the little available rainfall into green water flow paths. Indirect benefits from these improved techniques are the creation of fertile and moist zones around the bunds where supplementary food crops (e.g. bananas and cassava) can be grown even in dry seasons.

Boron nutrition and chilling tolerance of warm climate crop species.

PubMed

Huang, Longbin; Ye, Zhengqian; Bell, Richard W; Dell, Bernard

2005-10-01

Field observations and glasshouse studies have suggested links between boron (B)-deficiency and leaf damage induced by low temperature in crop plants, but causal relationships between these two stresses at physiological, biochemical and molecular levels have yet to be explored. Limited evidence at the whole-plant level suggests that chilling temperature in the root zone restricts B uptake capacity and/or B distribution/utilization efficiency in the shoot, but the nature of this interaction depends on chilling tolerance of species concerned, the mode of low temperature treatment (abrupt versus gradual temperature decline) and growth conditions (e.g. photon flux density and relative humidity) that may exacerbate chilling stress. This review explores roles of B nutrition in chilling tolerance of continual root or transient shoot chills in crop species adapted to warm season conditions. It reviews current research on combined effects of chilling temperature (ranging from >0 to 20 degrees C) and B deficiency on growth and B nutrition responses in crop species differing in chilling tolerance. For subtropical/tropical species (e.g. cucumber, cassava, sunflower), root chilling at 10-17 degrees C decreases B uptake efficiency and B utilization in the shoot and increases the shoot : root ratio, but chilling-tolerant temperate species (e.g. oilseed rape, wheat) require much lower root chill temperatures (2-5 degrees C) to achieve the same responses. Boron deficiency exacerbates chilling injuries in leaf tissues, particularly under high photon flux density. Suggested mechanisms for B x chilling interactions in plants are: (a) chilling-induced reduction in plasmalemma hydraulic conductivity, membrane fluidity, water channel activity and root pressure, which contribute to the decrease in root hydraulic conductance, water uptake and associated B uptake; (b) chilling-induced stomatal dysfunction affecting B transport from root to shoot and B partitioning in the shoot; and (c) B deficiency induced sensitivity to photo-oxidative damage in leaf cells. However, specific evidence for each of the mechanisms is still lacking. Impacts of B status on chilling tolerance in crop species have important implications for the management of B supply during sensitive stages of growth, such as early growth after planting and early reproductive development, both of which can coincide with the occurrence of chilling temperatures in the field.

Viticulture microzoning: a functional approach aiming to grape and wine qualities

NASA Astrophysics Data System (ADS)

Bonfante, A.; Agrillo, A.; Albrizio, R.; Basile, A.; Buonomo, R.; De Mascellis, R.; Gambuti, A.; Giorio, P.; Guida, G.; Langella, G.; Manna, P.; Minieri, L.; Moio, L.; Siani, T.; Terribile, F.

2014-12-01

This paper aims to test a new physically oriented approach to viticulture zoning at the farm scale, strongly rooted on hydropedology and aiming to achieve a better use of environmental features with respect to plant requirement and wine production. The physics of our approach is defined by the use of soil-plant-atmosphere simulation models which applies physically-based equations to describe the soil hydrological processes and solves soil-plant water status. This study (ZOVISA project) was conducted in a farm devoted to high quality wines production (Aglianico DOC), located in South Italy (Campania region, Mirabella Eclano-AV). The soil spatial distribution was obtained after standard soil survey informed by geophysical survey. Two Homogenous Zones (HZs) were identified; in each one of those a physically based model was applied to solve the soil water balance and estimate the soil functional behaviour (crop water stress index, CWSI) defining the functional Homogeneous Zones (fHzs). In these last, experimental plots were established and monitored for investigating soil-plant water status, crop development (biometric and physiological parameters) and daily climate variables (temperature, solar radiation, rainfall, wind). The effects of crop water status on crop response over must and wine quality were then evaluated in the fHZs. This was performed by comparing crop water stress with (i) crop physiological measurement (leaf gas exchange, chlorophyll a fluorescence, leaf water potential, chlorophyll content, LAI measurement), (ii) grape bunches measurements (berry weight, sugar content, titratable acidity, etc.) and (iii) wine quality (aromatic response). Eventually this experiment has proved the usefulness of the physical based approach also in the case of mapping viticulture microzoning.

Comparison of evapotranspiration rates for flatwoods and ridge citrus

USGS Publications Warehouse

Jia, X.; Swancar, A.; Jacobs, J.M.; Dukes, M.D.; Morgan, K.

2007-01-01

Florida citrus groves are typically grown in two regions of the state: flatwoods and ridge. The southern flatwoods citrus area has poorly drained fine textured sands with low organic matter in the shallow root zone. Ridge citrus is located in the northern ridge citrus zone and has fine to coarse textured sands with low water-holding capacity. Two commercial citrus groves, selected from each region, were studied from 15 July 2004 to 14 July 2005. The flatwoods citrus (FC) grove had a grass cover and used drainage ditches to remove excess water from the root zone. The ridge citrus (RC) grove had a bare soil surface with weeds periodically eliminated by tillage. Citrus crop evapotranspiration (ETc) rates at the two citrus groves were measured by the eddy correlation method, and components in the energy balance were also examined and compared. The study period had higher than average rainfall, and as a result, the two locations had similar annual ETc rates (1069 and 1044 mm for RC and FC, respectively). The ETc rates were 59% (RC) and 47% (FC) of the rainfall amounts during the study period. The annual reference crop evapotranspiration (ETo) rates were 1180 mm for RC and 1419 mm for FC, estimated using the standardized reference evapotranspiration equation. The citrus crop coefficients (Kc, ratio of ETc to ET o) were different between the two locations because of differences in latitude, ground cover, and rainfall amounts. The Kc values ranged from 0.70 between December and March to 1.05 between July and November for RC, and from 0.65 between November and May to 0.85 between June and October for FC. The results are consistent with other Kc values reported from field studies on citrus in both Florida and elsewhere using these and alternate methods.

Effect of aluminum treatment on proteomes of radicles of seeds derived from Al-treated tomato plants

USDA-ARS?s Scientific Manuscript database

Aluminum (Al) toxicity is a major constraint to plant growth and crop yield in acid soils. Tomato cultivars are especially susceptible to excessive A1 3+ accumulated in the root zone. In this study, tomato plants were grown in a hydroponic culture system supplemented with 50 uM AlK(SO4)2. Seeds harv...

Endophytic fungal diversity of Fragaria vesca, a crop wild relative of strawberry, along environmental gradients within a small geographical area

PubMed Central

Yokoya, Kazutomo; Postel, Sarah; Fang, Rui

2017-01-01

Background Fungal endophytes are highly diverse ubiquitous asymptomatic microorganisms, some of which appear to be symbiotic. Depending on abiotic conditions and genotype of the plant, the diversity of endophytes may confer fitness benefits to plant communities. Methods We studied a crop wild relative (CWR) of strawberry, along environmental gradients with a view to understand the cultivable root-derived endophytic fungi that can be evaluated for promoting growth and tolerating stress in selected plant groups. The main objectives were to understand whether: (a) suboptimal soil types are drivers for fungal distribution and diversity; (b) high pH and poor nutrient availability lead to fungal-plant associations that help deliver fitness benefits; and (c) novel fungi can be identified for their use in improving plant growth, and alleviate stress in diverse crops. Results The study revealed that habitats with high pH and low nutrient availability have higher fungal diversity, with more rare fungi isolated from locations with chalky soil. Plants from location G were the healthiest even though soil from this location was the poorest in nutrients. Study of environmental gradients, especially extreme habitat types, may help understand the root zone fungal diversity of different functional classes. Two small in vitro pilot studies conducted with two isolates showed that endophytic fungi from suboptimal habitats can promote plant growth and fitness benefits in selected plant groups. Discussion Targeting native plants and crop wild relatives for research offers opportunities to unearth diverse functional groups of root-derived endophytic fungi that are beneficial for crops. PMID:28168102

Sensitivity of Rhizoctonia Isolates to Phenazine-1-Carboxylic Acid and Biological Control by Phenazine-Producing Pseudomonas spp.

PubMed

Jaaffar, Ahmad Kamil Mohd; Parejko, James A; Paulitz, Timothy C; Weller, David M; Thomashow, Linda S

2017-06-01

Rhizoctonia solani anastomosis groups (AG)-8 and AG-2-1 and R. oryzae are ubiquitous in cereal-based cropping systems of the Columbia Plateau of the Inland Pacific Northwest and commonly infect wheat. AG-8 and R. oryzae, causal agents of Rhizoctonia root rot and bare patch, are most commonly found in fields in the low-precipitation zone, whereas R. solani AG-2-1 is much less virulent on wheat and is distributed in fields throughout the low-, intermediate-, and high-precipitation zones. Fluorescent Pseudomonas spp. that produce the antibiotic phenazine-1-carboxylic acid (PCA) also are abundant in the rhizosphere of crops grown in the low-precipitation zone but their broader geographic distribution and effect on populations of Rhizoctonia is unknown. To address these questions, we surveyed the distribution of PCA producers (Phz + ) in 59 fields in cereal-based cropping systems throughout the Columbia Plateau. Phz + Pseudomonas spp. were detected in 37 of 59 samples and comprised from 0 to 12.5% of the total culturable heterotrophic aerobic rhizosphere bacteria. The frequency with which individual plants were colonized by Phz + pseudomonads ranged from 0 to 100%. High and moderate colonization frequencies of Phz + pseudomonads were associated with roots from fields located in the driest areas whereas only moderate and low colonization frequencies were associated with crops where higher annual precipitation occurs. Thus, the geographic distribution of Phz + pseudomonads overlaps closely with the distribution of R. solani AG-8 but not with that of R. oryzae or R. solani AG-2-1. Moreover, linear regression analysis demonstrated a highly significant inverse relationship between annual precipitation and the frequency of rhizospheres colonized by Phz + pseudomonads. Phz + pseudomonads representative of the four major indigenous species (P. aridus, P. cerealis, P. orientalis, and P. synxantha) suppressed Rhizoctonia root rot of wheat when applied as seed treatments. In vitro, mean 50% effective dose values for isolates of AG-8 and AG-2-1 from fields with high and low frequencies of phenazine producers did not differ significantly, nor was there a correlation between virulence of an isolate and sensitivity to PCA, resulting in rejection of the hypothesis that tolerance in Rhizoctonia spp. to PCA develops in nature upon exposure to Phz + pseudomonads.

Crop Establishment Practices Are a Driver of the Plant Microbiota in Winter Oilseed Rape (Brassica napus)

PubMed Central

Rathore, Ridhdhi; Dowling, David N.; Forristal, Patrick D.; Spink, John; Cotter, Paul D.; Bulgarelli, Davide; Germaine, Kieran J.

2017-01-01

Gaining a greater understanding of the plant microbiota and its interactions with its host plant heralds a new era of scientific discovery in agriculture. Different agricultural management practices influence soil microbial populations by changing a soil’s physical, chemical and biological properties. However, the impact of these practices on the microbiota associated with economically important crops such as oilseed rape, are still understudied. In this work we investigated the impact of two contrasting crop establishment practices, conventional (plow based) and conservation (strip–tillage) systems, on the microbiota inhabiting different plant microhabitats, namely rhizosphere, root and shoot, of winter oilseed rape under Irish agronomic conditions. Illumina 16S rRNA gene sequence profiling showed that the plant associated microhabitats (root and shoot), are dominated by members of the bacterial phyla Proteobacteria, Actinobacteria and Bacteroidetes. The root and shoot associated bacterial communities displayed markedly distinct profiles as a result of tillage practices. We observed a very limited ‘rhizosphere effect’ in the root zone of WOSR, i.e., there was little or no increase in bacterial community richness and abundance in the WOSR rhizosphere compared to the bulk soil. The two tillage systems investigated did not appear to lead to any major long term differences on the bulk soil or rhizosphere bacterial communities. Our data suggests that the WOSR root and shoot microbiota can be impacted by management practices and is an important mechanism that could allow us to understand how plants respond to different management practices and environments. PMID:28848510

Standing crop and aboveground biomass partitioning of a dwarf mangrove forest in Taylor River Slough, Florida

USGS Publications Warehouse

Coronado-Molina, C.; Day, J.W.; Reyes, E.; Perez, B.C.

2004-01-01

The structure and standing crop biomass of a dwarf mangrove forest, located in the salinity transition zone ofTaylor River Slough in the Everglades National Park, were studied. Although the four mangrove species reported for Florida occurred at the study site, dwarf Rhizophora mangle trees dominated the forest. The structural characteristics of the mangrove forest were relatively simple: tree height varied from 0.9 to 1.2 meters, and tree density ranged from 7062 to 23 778 stems haa??1. An allometric relationship was developed to estimate leaf, branch, prop root, and total aboveground biomass of dwarf Rhizophora mangle trees. Total aboveground biomass and their components were best estimated as a power function of the crown area times number of prop roots as an independent variable (Y = B ?? Xa??0.5083). The allometric equation for each tree component was highly significant (p<0.0001), with all r2 values greater than 0.90. The allometric relationship was used to estimate total aboveground biomass that ranged from 7.9 to 23.2 ton haa??1. Rhizophora mangle contributed 85% of total standing crop biomass. Conocarpus erectus, Laguncularia racemosa, and Avicennia germinans contributed the remaining biomass. Average aboveground biomass allocation was 69% for prop roots, 25% for stem and branches, and 6% for leaves. This aboveground biomass partitioning pattern, which gives a major role to prop roots that have the potential to produce an extensive root system, may be an important biological strategy in response to low phosphorus availability and relatively reduced soils that characterize mangrove forests in South Florida.

Aluminum stress signaling in plants

PubMed Central

Baluska, Frantisek; Matsumoto, Hideaki

2009-01-01

Aluminum (Al) toxicity is a major constraint for crop production in acidic soil worldwide. When the soil pH is lower than 5, Al3+ is released to the soil and enters into root tip cell ceases root development of plant. In acid soil with high mineral content, Al is the major cause of phytotoxicity. The target of Al toxicity is the root tip, in which Al exposure causes inhibition of cell elongation and cell division, leading to root stunting accompanied by reduced water and nutrient uptake. A variety of genes have been identified that are induced or repressed upon Al exposure. At tissue level, the distal part of the transition zone is the most sensitive to Al. At cellular and molecular level, many cell components are implicated in the Al toxicity including DNA in nucleus, numerous cytoplastic compounds, mitochondria, the plasma membrane and the cell wall. Although it is difficult to distinguish the primary targets from the secondary effects so far, understanding of the target sites of the Al toxicity is helpful for elucidating the mechanisms by which Al exerts its deleterious effects on root growth. To develop high tolerance against Al stress is the major goal of plant sciences. This review examines our current understanding of the Al signaling with the physiological, genetic and molecular approaches to improve the crop performance under the Al toxicity. New discoveries will open up new avenues of molecular/physiological inquiry that should greatly advance our understanding of Al tolerance mechanisms. Additionally, these breakthroughs will provide new molecular resources for improving the crop Al tolerance via molecular-assisted breeding and biotechnology. PMID:19820334

Consequences of waterlogging in cotton and opportunities for mitigation of yield losses

PubMed Central

Najeeb, Ullah; Bange, Michael P.; Tan, Daniel K. Y.; Atwell, Brian J.

2015-01-01

Climatic variability, typified by erratic heavy-rainfall events, causes waterlogging in intensively irrigated crops and is exacerbated under warm temperature regimes on soils with poor internal drainage. Irrigated cotton is often grown in precisely these conditions, exposing it to waterlogging-induced yield losses after substantial summer rainfall. This calls for a deeper understanding of mechanisms of waterlogging tolerance and its relevance to cotton. Hence this review suggests possible causes of waterlogging-induced yield loss in cotton and approaches to improvement of waterlogging tolerance, drawing upon the slight body of published data in cotton and principles from other species. The yield penalty depends on soil type, phenological stage and cumulative period of root exposure to air-filled porosities below 10 %. Events in the soil include O2 deficiency in the root zone that changes the redox state of nutrients, making them unavailable (e.g. nitrogen) or potentially toxic for plants. Furthermore, root-derived hormones that are transported in the xylem have long been associated with oxygen deficits. These belowground effects (impaired root growth, nutrient uptake and transport, hormonal signalling) affect the shoots, interfering with canopy development, photosynthesis and radiation-use efficiency. Compared with the more waterlogging-tolerant cereals, cotton does not have identified adaptations to waterlogging in the root zone, forming no conspicuous root aerenchyma and having low fermentative activity. We speculate that these factors contribute substantially to the sensitivity of cotton to sustained periods of waterlogging. We discuss the impact of these belowground factors on shoot performance, photosynthesis and yield components. Management practices, i.e. soil aeration, scheduling irrigation and fertilizer application, can reduce waterlogging-induced damage. Limiting ethylene biosynthesis using anti-ethylene agents and down-regulating expression of genes controlling ethylene biosynthesis are strong candidates to minimize yield losses in waterlogged cotton crops. Other key pathways of anoxia tolerance are also cited as potential tools towards waterlogging-tolerant cotton genotypes. PMID:26194168

Nutrient cycling and Above- and Below-ground Interactions in a Runoff Agroforestry System Applied with Composted Tree Trimmings

NASA Astrophysics Data System (ADS)

Ilani, Talli; Ephrath, Jhonathan; Silberbush, Moshe; Berliner, Pedro

2014-05-01

The primary production in arid zones is limited due to shortage of water and nutrients. Conveying flood water and storing it in plots surrounded by embankments allows their cropping. The efficient exploitation of the stored water can be achieved through an agroforestry system, in which two crops are grown simultaneously: annual crops with a shallow root system and trees with a deeper root system. We posit that the long-term productivity of this system can be maintained by intercropping symbiotic N fixing shrubs with annual crops, and applying the pruned and composted shrub leaves to the soil, thus ensuring an adequate nitrogen level (a limiting factor in drylands) in the soil. To test our hypothesis we carried a two year trial in which fast-growing acacia (A. saligna) trees were the woody component and maize (Zea mays L.) the intercrop. Ten treatments were applied over two maize growth seasons to examine the below- and above-ground effects of tree pruning, compost application and interactions. The addition of compost in the first growth season led to an increase of the soil organic matter reservoir, which was the main N source for the maize during the following growth season. In the second growth season the maize yield was significantly higher in the plots to which compost was applied. Pruning the tree's canopies changed the trees spatial and temporal root development, allowing the annual crop to develop between the trees. The roots of pruned trees intercropped with maize penetrated deeper in the soil. The intercropping of maize within pruned trees and implementing compost resulted in a higher water use efficiency of the water stored in the soil when compared to the not composted and monoculture treatments. The results presented suggest that the approach used in this study can be the basis for achieving sustainable agricultural production under arid conditions.

Soil Moisture as an Estimator for Crop Yield in Germany

NASA Astrophysics Data System (ADS)

Peichl, Michael; Meyer, Volker; Samaniego, Luis; Thober, Stephan

2015-04-01

Annual crop yield depends on various factors such as soil properties, management decisions, and meteorological conditions. Unfavorable weather conditions, e.g. droughts, have the potential to drastically diminish crop yield in rain-fed agriculture. For example, the drought in 2003 caused direct losses of 1.5 billion EUR only in Germany. Predicting crop yields allows to mitigate negative effects of weather extremes which are assumed to occur more often in the future due to climate change. A standard approach in economics is to predict the impact of climate change on agriculture as a function of temperature and precipitation. This approach has been developed further using concepts like growing degree days. Other econometric models use nonlinear functions of heat or vapor pressure deficit. However, none of these approaches uses soil moisture to predict crop yield. We hypothesize that soil moisture is a better indicator to explain stress on plant growth than estimations based on precipitation and temperature. This is the case because the latter variables do not explicitly account for the available water content in the root zone, which is the primary source of water supply for plant growth. In this study, a reduced form panel approach is applied to estimate a multivariate econometric production function for the years 1999 to 2010. Annual crop yield data of various crops on the administrative district level serve as depending variables. The explanatory variable of major interest is the Soil Moisture Index (SMI), which quantifies anomalies in root zone soil moisture. The SMI is computed by the mesoscale Hydrological Model (mHM, www.ufz.de/mhm). The index represents the monthly soil water quantile at a 4 km2 grid resolution covering entire Germany. A reduced model approach is suitable because the SMI is the result of a stochastic weather process and therefore can be considered exogenous. For the ease of interpretation a linear functionality is preferred. Meteorological, phenological, geological, agronomic, and socio-economic variables are also considered to extend the model in order to reveal the proper causal relation. First results show that dry as well as wet extremes of SMI have a negative impact on crop yield for winter wheat. This indicates that soil moisture has at least a limiting affect on crop production.

Non-invasive monitoring and modelling of the root active zones: progresses, caveats and outlook.

NASA Astrophysics Data System (ADS)

Cassiani, G.; Putti, M.; Boaga, J.; Busato, L.; Vanella, D.; Consoli, S.

2016-12-01

Roots play a fundamental role in soil-plant-atmosphere interactions as they not only control water and nutrient exchanges necessary for plant sustenance, but also largely contribute, through the plant system, to the mass and energy exchanges between soil and atmosphere. Therefore understanding root zone processes is of major importance not only for crop management but also for wider scale catchment and global issues. Geophysical methods can greatly contribute to imaging the root zone geometry and processes, provided that high-resolution, time-lapse measurements are set up, and provided that the survey design takes into due considerations the expected processes to be imaged. In this respect, modelling and monitoring go hand in hand not only a-posteriori to try and interpret the data, but also a-priori in the attempt to optimise monitoring strategies. In this work we present a few case studies concerning root monitoring using ERT with the support of ancillary data of hydrological and physiological nature. Different degrees of integration with modelling will be presented, with the aim of showing how a full Data Assimilation scheme can be built. In addition, the results will help address fundamental questions such as: (a) is root growth controlled by optimality principles under the constraints posed by soil hydraulic and mechanical properties, by water and nutrient availability and by plant competition? (b) is the optimality above also controlling the dynamic processing of root adaptation to changing constraints? (c) to what extent can these processes of soil-plant interaction be monitored in controlled conditions as well as in true-life environments? These questions, and the availability of ever advancing modelling and monitoring capabilities, are likely to develop into a growing and exciting field of research.

Untangling the effects of shallow groundwater and deficit irrigation on irrigation water productivity in arid region: New conceptual model.

PubMed

Xue, Jingyuan; Huo, Zailin; Wang, Fengxin; Kang, Shaozhong; Huang, Guanhua

2018-04-01

Water scarcity and salt stress are two main limitations for agricultural production. Groundwater evapotranspiration (ET g ) with upward salt movement plays an important role in crop water use and water productivity in arid regions, and it can compensate the impact of deficit irrigation on crop production. Thus, comprehensive impacts of shallow groundwater and deficit irrigation on crop water use results in an improvement of irrigation water productivity (IWP). However, it is difficult to quantify the effects of groundwater and deficit irrigation on IWP. In this study, we built an IWP evaluation model coupled with a water and salt balance model and a crop yield estimation model. As a valuable tool of IWP simulation, the calibrated model was used to investigate the coupling response of sunflower IWP to irrigation water depths (IWDs), groundwater table depth (GTDs) and groundwater salinities (GSs). A total of 210 scenarios were run in which five irrigation water depths (IWDs) and seven groundwater table depths (GTDs) and six groundwater salinities (GSs) were used. Results indicate that increasing GS clearly increases the negative effect on a crop's actual evapotranspiration (ET a ) as salt accumulation in root zone. When GS is low (0.5-1g/L), increasing GTD produces more positive effect than negative effect. In regard to relatively high GS (2-5g/L), the negative effect of shallow-saline groundwater reaches a maximum at 2m GTD. Additionally, the salt concentration in the root zone maximizes its value at 2.0m GTD. In most cases, increasing GTD and GS reduces the benefits of irrigation water and IWP. The IWP increases with decreasing irrigation water. Overall, in arid regions, capillary rise of shallow groundwater can compensate for the lack of irrigation water and improve IWP. By improving irrigation schedules and taking advantages of shallow saline groundwater, we can obtain higher IWP. Copyright © 2017 Elsevier B.V. All rights reserved.

Potentials and problems of sustainable irrigation with water high in salts

NASA Astrophysics Data System (ADS)

Ben-Gal, Alon

2015-04-01

Water scarcity and need to expand agricultural productivity have led to ever growing utilization of poor quality water for irrigation of crops. Almost in all cases, marginal or alternative water sources for irrigation contain relatively high concentrations of dissolved salts. When salts are present, irrigation water management, especially in the dry regions where water requirements are highest, must consider leaching in addition to crop evapotranspiration requirements. Leaching requirements for agronomic success are calculable and functions of climate, soil, and very critically, of crop sensitivity and the actual salinity of the irrigation water. The more sensitive the crop and more saline the water, the higher the agronomic cost and the greater the quantitative need for leaching. Israel is a forerunner in large-scale utilization of poor quality water for irrigation and can be used as a case study looking at long term repercussions of policy alternatively encouraging irrigation with recycled water or brackish groundwater. In cases studied in desert conditions of Israel, as much of half of the water applied to crops including bell peppers in greenhouses and date palms is actually used to leach salts from the root zone. The excess water used to leach salts and maintain agronomic and economic success when irrigating with water containing salts can become an environmental hazard, especially in dry areas where natural drainage is non-existent. The leachate often contains not only salts but also agrochemicals including nutrients, and natural contaminants can be picked up and transported as well. This leachate passes beyond the root zone and eventually reaches ground or surface water resources. This, together with evidence of ongoing increases in sodium content of fresh produce and increased SAR levels of soils, suggest that the current policy and practice in Israel of utilization of high amounts of low quality irrigation water is inherently non- sustainable. Current trends and technologies allowing economically feasible desalination at large scales present a sustainable alternative where salts are removed from water prior to irrigation.

Impacts of Past Land Use Changes on Water Resources: An Analog for Assessing Effects of Proposed Bioenergy Crops

NASA Astrophysics Data System (ADS)

Scanlon, B. R.; Schilling, K.; Young, M.; Duncan, I. J.; Gerbens-Leenes, P.

2011-12-01

Interest is increasing in renewable energy sources, including bioenergy. However, potential impacts of bioenergy crops on water resources need to be better understood before large scale expansion occurs. This study evaluates the potential for using past land use change impacts on water resources as an analog for assessing future bioenergy crop effects. Impacts were assessed for two cases and methods: (1) changes from perennial to annual crops in the Midwest U.S. using stream hydrograph separation; and (2) changes from perennial grasses and shrubs to annual crops in the Southwest U.S. using unsaturated zone and groundwater data. Results from the Midwest show that expanding the soybean production area by 80,000 km2 increased stream flow by 32%, based on data from Keokuk station in the Upper Mississippi River Basin. Using these relationships, further expansion of annual corn production for biofuels by 10 - 50% would increase streamflow by up to 40%, with related increases in nitrate, phosphate, and sediment pollutant transport to the Gulf of Mexico. The changes in water partitioning are attributed to reducing evapotranspiration, increasing recharge and baseflow discharge to streams. Similar results were found in the southwestern US, where changes from native perennial grasses and shrubs to annual crops increased recharge from ~0.0 to 24 mm/yr, raising water tables by up to 7 m in some regions and flushing accumulated salts into underlying aquifers in the southern High Plains. The changes in water partitioning are related to changes in rooting depth from deep rooted native vegetation to shallow rooted crops and growing season length. Further expansion of annual bioenergy crops, such as changes from Conservation Reserve Program to corn in the Midwest, will continue the trajectory of reducing ET, thereby increasing recharge and baseflow to streams and nutrient export. We hypothesize that changing bioenergy crops from annual crops to perennial grasses, such as switchgrass and Miscanthus, will reverse these changes in water partitioning, increasing ET, and decreasing recharge, baseflow and nutrient transport to streams. These changes occur primarily because of the deeper roots and longer growing season of the grasses, capturing water percolating downward. These projected changes in water resources are supported by high water footprints for perennial grasses relative to annual crops globally. While reducing pollution from nutrient loading is an obvious benefit, reducing recharge may have negative ramifications for groundwater and surface water resources. Our research shows that there are water quantity and quality consequences of cultivating various bioenergy crops that should be considered before large scale expansion occurs. Data from past land use changes provide valuable information that can be used as a guide to evaluate potential impacts of future land use changes related to bioenergy crops.

Genotype-Specific Variation in the Structure of Root Fungal Communities Is Related to Chickpea Plant Productivity

PubMed Central

Hamel, Chantal; Gan, Yantai; Tar'an, Bunyamin; Knight, Joan Diane

2015-01-01

Increasing evidence supports the existence of variations in the association of plant roots with symbiotic fungi that can improve plant growth and inhibit pathogens. However, it is unclear whether intraspecific variations in the symbiosis exist among plant cultivars and if they can be used to improve crop productivity. In this study, we determined genotype-specific variations in the association of chickpea roots with soil fungal communities and evaluated the effect of root mycota on crop productivity. A 2-year field experiment was conducted in southwestern Saskatchewan, the central zone of the chickpea growing region of the Canadian prairie. The effects of 13 cultivars of chickpea, comprising a wide range of phenotypes and genotypes, were tested on the structure of root-associated fungal communities based on internal transcribed spacer (ITS) and 18S rRNA gene markers using 454 amplicon pyrosequencing. Chickpea cultivar significantly influenced the structure of the root fungal community. The magnitude of the effect varied with the genotypes evaluated, and effects were consistent across years. For example, the roots of CDC Corrine, CDC Cory, and CDC Anna hosted the highest fungal diversity and CDC Alma and CDC Xena the lowest. Fusarium sp. was dominant in chickpea roots but was less abundant in CDC Corrine than the other cultivars. A bioassay showed that certain of these fungal taxa, including Fusarium species, can reduce the productivity of chickpea, whereas Trichoderma harzianum can increase chickpea productivity. The large variation in the profile of chickpea root mycota, which included growth-promoting and -inhibiting species, supports the possibility of improving the productivity of chickpea by improving its root mycota in chickpea genetic improvement programs using traditional breeding techniques. PMID:25616789

Partial Root-Zone Drying of Olive (Olea europaea var. 'Chetoui') Induces Reduced Yield under Field Conditions.

PubMed

Dbara, Soumaya; Haworth, Matthew; Emiliani, Giovani; Ben Mimoun, Mehdi; Gómez-Cadenas, Aurelio; Centritto, Mauro

2016-01-01

The productivity of olive trees in arid and semi-arid environments is closely linked to irrigation. It is necessary to improve the efficiency of irrigation techniques to optimise the amount of olive fruit produced in relation to the volume of water used. Partial root-zone drying (PRD) is a water saving irrigation technique that theoretically allows the production of a root-to-shoot signal that modifies the physiology of the above-ground parts of the plant; specifically reducing stomatal conductance (gs) and improving water use efficiency (WUE). Partial root-zone drying has been successfully applied under field conditions to woody and non-woody crops; yet the few previous trials with olive trees have produced contrasting results. Thirty year-old olive trees (Olea europaea 'var. Chetoui') in a Tunisian grove were exposed to four treatments from May to October for three-years: 'control' plants received 100% of the potential evapotranspirative demand (ETc) applied to the whole root-zone; 'PRD100' were supplied with an identical volume of water to the control plants alternated between halves of the root-zone every ten-days; 'PRD50' were given 50% of ETc to half of the root-system, and; 'rain-fed' plants received no supplementary irrigation. Allowing part of the root-zone to dry resulted in reduced vegetative growth and lower yield: PRD100 decreased yield by ~47% during productive years. During the less productive years of the alternate bearing cycle, irrigation had no effect on yield; this suggests that withholding of water during 'off-years' may enhance the effectiveness of irrigation over a two-year cycle. The amount and quality of oil within the olive fruit was unaffected by the irrigation treatment. Photosynthesis declined in the PRD50 and rain-fed trees due to greater diffusive limitations and reduced biochemical uptake of CO2. Stomatal conductance and the foliar concentration of abscisic acid (ABA) were not altered by PRD100 irrigation, which may indicate the absence of a hormonal root-to-shoot signal. Rain-fed and PRD50 treatments induced increased stem water potential and increased foliar concentrations of ABA, proline and soluble sugars. The stomata of the olive trees were relatively insensitive to super-ambient increases in [CO2] and higher [ABA]. These characteristics of 'hydro-passive' stomatal behaviour indicate that the 'Chetoui' variety of olive tree used in this study lacks the physiological responses required for the successful exploitation of PRD techniques to increase yield and water productivity. Alternative irrigation techniques such as partial deficit irrigation may be more suitable for 'Chetoui' olive production.

Extensive tissue-specific transcriptomic plasticity in maize primary roots upon water deficit.

PubMed

Opitz, Nina; Marcon, Caroline; Paschold, Anja; Malik, Waqas Ahmed; Lithio, Andrew; Brandt, Ronny; Piepho, Hans-Peter; Nettleton, Dan; Hochholdinger, Frank

2016-02-01

Water deficit is the most important environmental constraint severely limiting global crop growth and productivity. This study investigated early transcriptome changes in maize (Zea mays L.) primary root tissues in response to moderate water deficit conditions by RNA-Sequencing. Differential gene expression analyses revealed a high degree of plasticity of the water deficit response. The activity status of genes (active/inactive) was determined by a Bayesian hierarchical model. In total, 70% of expressed genes were constitutively active in all tissues. In contrast, <3% (50 genes) of water deficit-responsive genes (1915) were consistently regulated in all tissues, while >75% (1501 genes) were specifically regulated in a single root tissue. Water deficit-responsive genes were most numerous in the cortex of the mature root zone and in the elongation zone. The most prominent functional categories among differentially expressed genes in all tissues were 'transcriptional regulation' and 'hormone metabolism', indicating global reprogramming of cellular metabolism as an adaptation to water deficit. Additionally, the most significant transcriptomic changes in the root tip were associated with cell wall reorganization, leading to continued root growth despite water deficit conditions. This study provides insight into tissue-specific water deficit responses and will be a resource for future genetic analyses and breeding strategies to develop more drought-tolerant maize cultivars. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Quantifying agricultural drought impacts using soil moisture model and drought indices in South Korea

NASA Astrophysics Data System (ADS)

Nam, W. H.; Bang, N.; Hong, E. M.; Pachepsky, Y. A.; Han, K. H.; Cho, H.; Ok, J.; Hong, S. Y.

2017-12-01

Agricultural drought is defined as a combination of abnormal deficiency of precipitation, increased crop evapotranspiration demands from high-temperature anomalies, and soil moisture deficits during the crop growth period. Soil moisture variability and their spatio-temporal trends is a key component of the hydrological balance, which determines the crop production and drought stresses in the context of agriculture. In 2017, South Korea has identified the extreme drought event, the worst in one hundred years according to the South Korean government. The objective of this study is to quantify agricultural drought impacts using observed and simulated soil moisture, and various drought indices. A soil water balance model is used to simulate the soil water content in the crop root zone under rain-fed (no irrigation) conditions. The model used includes physical process using estimated effective rainfall, infiltration, redistribution in soil water zone, and plant water uptake in the form of actual crop evapotranspiration. Three widely used drought indices, including the Standardized Precipitation Index (SPI), the Standardized Precipitation Evapotranspiration Index (SPEI), and the Self-Calibrated Palmer Drought Severity Index (SC-PDSI) are compared with the observed and simulated soil moisture in the context of agricultural drought impacts. These results demonstrated that the soil moisture model could be an effective tool to provide improved spatial and temporal drought monitoring for drought policy.

Poplar PtabZIP1-like enhances lateral root formation and biomass growth under drought stress

DOE PAGES

Dash, Madhumita; Yordanov, Yordan S.; Georgieva, Tatyana; ...

2017-02-10

Developing drought-resistance varieties is a major goal for bioenergy crops, such as poplar (Populus), which will be grown on marginal lands with little or no water input. Root architecture can affect drought resistance, but few genes that affect root architecture in relation to water availability have been identified. Here in this study, using activation tagging in the prime bioenergy crop poplar, we have identified a mutant that overcomes the block of lateral root (LR) formation under osmotic stress. Positioning of the tag, validation of the activation and recapitulation showed that the phenotype is caused by the poplar PtabZIP1-like (PtabZIP1L) genemore » with highest homology to bZIP1 from Arabidopsis. PtabZIP1L is predominantly expressed in roots, particularly in zones where lateral root primordia (LRP) initiate and LR differentiate and emerge. Transgenics overexpressing PtabZIP1L showed precocious LRP and LR development, while PtabZIP1L suppression significantly delayed both LRP and LR formation. Transgenic overexpression and suppression of PtabZIP1L also resulted in modulation of key metabolites like proline, asparagine, valine and several flavonoids. Consistently, expression of both of the poplar Proline Dehydrogenase orthologs and two of the Flavonol Synthases genes was also increased and decreased in overexpressed and suppressed transgenics, respectively. These findings suggest that PtabZIP1L mediates LR development and drought resistance through modulation of multiple metabolic pathways.« less

Poplar PtabZIP1-like enhances lateral root formation and biomass growth under drought stress

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dash, Madhumita; Yordanov, Yordan S.; Georgieva, Tatyana

Developing drought-resistance varieties is a major goal for bioenergy crops, such as poplar (Populus), which will be grown on marginal lands with little or no water input. Root architecture can affect drought resistance, but few genes that affect root architecture in relation to water availability have been identified. Here in this study, using activation tagging in the prime bioenergy crop poplar, we have identified a mutant that overcomes the block of lateral root (LR) formation under osmotic stress. Positioning of the tag, validation of the activation and recapitulation showed that the phenotype is caused by the poplar PtabZIP1-like (PtabZIP1L) genemore » with highest homology to bZIP1 from Arabidopsis. PtabZIP1L is predominantly expressed in roots, particularly in zones where lateral root primordia (LRP) initiate and LR differentiate and emerge. Transgenics overexpressing PtabZIP1L showed precocious LRP and LR development, while PtabZIP1L suppression significantly delayed both LRP and LR formation. Transgenic overexpression and suppression of PtabZIP1L also resulted in modulation of key metabolites like proline, asparagine, valine and several flavonoids. Consistently, expression of both of the poplar Proline Dehydrogenase orthologs and two of the Flavonol Synthases genes was also increased and decreased in overexpressed and suppressed transgenics, respectively. These findings suggest that PtabZIP1L mediates LR development and drought resistance through modulation of multiple metabolic pathways.« less

Anatomy of a local-scale drought: Application of assimilated remote sensing products, crop model, and statistical methods to an agricultural drought study

NASA Astrophysics Data System (ADS)

Mishra, Ashok K.; Ines, Amor V. M.; Das, Narendra N.; Prakash Khedun, C.; Singh, Vijay P.; Sivakumar, Bellie; Hansen, James W.

2015-07-01

Drought is of global concern for society but it originates as a local problem. It has a significant impact on water quantity and quality and influences food, water, and energy security. The consequences of drought vary in space and time, from the local scale (e.g. county level) to regional scale (e.g. state or country level) to global scale. Within the regional scale, there are multiple socio-economic impacts (i.e., agriculture, drinking water supply, and stream health) occurring individually or in combination at local scales, either in clusters or scattered. Even though the application of aggregated drought information at the regional level has been useful in drought management, the latter can be further improved by evaluating the structure and evolution of a drought at the local scale. This study addresses a local-scale agricultural drought anatomy in Story County in Iowa, USA. This complex problem was evaluated using assimilated AMSR-E soil moisture and MODIS-LAI data into a crop model to generate surface and sub-surface drought indices to explore the anatomy of an agricultural drought. Quantification of moisture supply in the root zone remains a gray area in research community, this challenge can be partly overcome by incorporating assimilation of soil moisture and leaf area index into crop modeling framework for agricultural drought quantification, as it performs better in simulating crop yield. It was noted that the persistence of subsurface droughts is in general higher than surface droughts, which can potentially improve forecast accuracy. It was found that both surface and subsurface droughts have an impact on crop yields, albeit with different magnitudes, however, the total water available in the soil profile seemed to have a greater impact on the yield. Further, agricultural drought should not be treated equal for all crops, and it should be calculated based on the root zone depth rather than a fixed soil layer depth. We envisaged that the results of this study will enhance our understanding of agricultural droughts in different parts of the world.

Root zone water quality model (RZWQM2): Model use, calibration and validation

USGS Publications Warehouse

Ma, Liwang; Ahuja, Lajpat; Nolan, B.T.; Malone, Robert; Trout, Thomas; Qi, Z.

2012-01-01

The Root Zone Water Quality Model (RZWQM2) has been used widely for simulating agricultural management effects on crop production and soil and water quality. Although it is a one-dimensional model, it has many desirable features for the modeling community. This article outlines the principles of calibrating the model component by component with one or more datasets and validating the model with independent datasets. Users should consult the RZWQM2 user manual distributed along with the model and a more detailed protocol on how to calibrate RZWQM2 provided in a book chapter. Two case studies (or examples) are included in this article. One is from an irrigated maize study in Colorado to illustrate the use of field and laboratory measured soil hydraulic properties on simulated soil water and crop production. It also demonstrates the interaction between soil and plant parameters in simulated plant responses to water stresses. The other is from a maize-soybean rotation study in Iowa to show a manual calibration of the model for crop yield, soil water, and N leaching in tile-drained soils. Although the commonly used trial-and-error calibration method works well for experienced users, as shown in the second example, an automated calibration procedure is more objective, as shown in the first example. Furthermore, the incorporation of the Parameter Estimation Software (PEST) into RZWQM2 made the calibration of the model more efficient than a grid (ordered) search of model parameters. In addition, PEST provides sensitivity and uncertainty analyses that should help users in selecting the right parameters to calibrate.

Land Retirement as a Habitat Restoration Tool

NASA Astrophysics Data System (ADS)

Singh, P. N.; Wallender, W. W.

2007-12-01

Use of intensive irrigation in arid and semi-arid areas usually leads to gradual salination of the soil leading to crop yield decline. The salination problem is mitigated by applying irrigation in excess of crop requirements, which leaches the excess salt load to the groundwater. Insufficient natural or man made drainage to dispose off this saline recharge to the groundwater leads to a gradual rise in the water table and eventual encroachment upon the root zone. This may ultimately make the land unfit for any economically productive activity. The abandoned land may even lead to desertification with adverse environmental consequences. In drainage basins with no surface outflow (sometimes called closed basins), land retirement has been proposed as a management tool to address this problem. Land retirement essentially entails intentionally discontinuing irrigation of selected farmlands with the expectation that the shallow water table beneath those lands should drop and the root zone salinity level should decrease. In the San Joaquin Valley of California, intensive irrigation in conjunction with a shallow underlying layer of clay, known as the Corcoran clay layer and absence of a drainage system caused the root zone to become highly saline and the shallow water table to rise. Land retirement would remove from production those farmlands contributing the poorest quality subsurface drain water. Based on numerical models results, it was expected that with land retirement of substantial irrigated lands with poor drainage characteristics, beneath which lies shallow groundwater with high salt load, the shallow water table beneath those lands should drop. A part of the retired lands could also be used for wildlife habitat. A potential negative side of the land retirement option that has to be considered is that in certain enabling evapotranspiration, soil and water table conditions, water will be drawn upwards and evaporated, leaving a deposit of salts on the surface and in the root zone. Salt on the surface may then be wind blown to adjacent areas creating a potential environmental hazard. Using field results from the U.S. Department of the Interior Land Retirement Demonstration Project at the Tranquillity site located in western Fresno County, principles of mass balance in a fixed control volume, the HYDRUS-1D Software Package for Simulating the One-Dimensional Movement of Water, Heat, and Multiple Solutes in Variably-Saturated Media, and PEST, a model-independent parameter optimizer, we have investigated the processes of soil water and salinity movement in the root zone and the deep vadose zone. Various combinations of evapotranspiration, soil water retention properties, water table condition and top and bottom boundary condition were tested. We show that certain Land Retirement scenarios decrease shallow water table and soil water salinity and enhance development of native plants as a means to facilitate habitat restoration for certain combination of soil and bottom boundary condition. Other combinations are not sustainable.

Transport and fate of nitrate within soil units of glacial origin

NASA Astrophysics Data System (ADS)

Moore, Suzanna L.; Peterson, Eric W.

2007-08-01

Questions concerning the influence of soil type and crop cover on the fate and transport of nitrate (NO{3/-}) were examined. During a growing season, soils derived from glacial material underlying either corn or soybeans were sampled for levels of NO{3/-} within the pore water. Measured levels of NO{3/-} ranged from below detection limit to 14.9 g NO{3/-} per kilogram of soil (g/kg). In fields with the same crop cover, the silty-clayey soil exhibited a greater decrease in NO{3/-} levels with depth than the sandier soil. Crop uptake of NO{3/-} occurs within the root zone; however, the type of crop cover did not have a direct impact on the fate or transport during the growing season. The soils underlying soybeans had an increase in NO{3/-} levels following harvest, suggesting that the decomposition of the soybean roots contributed to the net gain of NO{3/-} in the shallow soil. For all of the soil types, conditions below 100 cm are conducive for microbial denitrification, with both a high water saturation level (>60%) and moderate organic carbon content (1-2%). At depths below 100 cm, temporal differences in NO{3/-} levels of over a magnitude, up to a 95% reduction, were recorded in the soil units as the growing season progressed. Physical properties that control the transport of NO{3/-} or denitrification have a larger influence on NO{3/-} levels than crop type.

Seasonal temperatures have more influence than nitrogen fertilizer rates on cucumber yield and nitrogen uptake in a double cropping system.

PubMed

Guo, Ruiying; Li, Xiaolin; Christie, Peter; Chen, Qing; Zhang, Fusuo

2008-02-01

Two-year greenhouse cucumber experiments were conducted to investigate seasonal effects on fruit yield, dry matter allocation, and N uptake in a double-cropping system with different fertilizer management. Seasonal effects were much greater than fertilizer effects, and winter-spring (WS) cucumber attained higher fruit yields and N uptake than autumn-winter (AW) cucumber due to lower cumulative air temperatures during fruit maturation in the AW season. Fertilizer N application and apparent N loss under recommended N management (Nmr) decreased by 40-78% and 33-48% without yield loss compared to conventional N management (Nmt) over four growing seasons. However, there were no seasonal differences in N recommendations, taking into consideration seasonal differences in crop N demand, critical nutrient supply in the root zone and N mineralization rate.

Conservation of polypyrimidine tract binding proteins and their putative target RNAs in several storage root crops.

PubMed

Kondhare, Kirtikumar R; Kumar, Amit; Hannapel, David J; Banerjee, Anjan K

2018-02-07

Polypyrimidine-tract binding proteins (PTBs) are ubiquitous RNA-binding proteins in plants and animals that play diverse role in RNA metabolic processes. PTB proteins bind to target RNAs through motifs rich in cytosine/uracil residues to fine-tune transcript metabolism. Among tuber and root crops, potato has been widely studied to understand the mobile signals that activate tuber development. Potato PTBs, designated as StPTB1 and StPTB6, function in a long-distance transport system by binding to specific mRNAs (StBEL5 and POTH1) to stabilize them and facilitate their movement from leaf to stolon, the site of tuber induction, where they activate tuber and root growth. Storage tubers and root crops are important sustenance food crops grown throughout the world. Despite the availability of genome sequence for sweet potato, cassava, carrot and sugar beet, the molecular mechanism of root-derived storage organ development remains completely unexplored. Considering the pivotal role of PTBs and their target RNAs in potato storage organ development, we propose that a similar mechanism may be prevalent in storage root crops as well. Through a bioinformatics survey utilizing available genome databases, we identify the orthologues of potato PTB proteins and two phloem-mobile RNAs, StBEL5 and POTH1, in five storage root crops - sweet potato, cassava, carrot, radish and sugar beet. Like potato, PTB1/6 type proteins from these storage root crops contain four conserved RNA Recognition Motifs (characteristic of RNA-binding PTBs) in their protein sequences. Further, 3´ UTR (untranslated region) analysis of BEL5 and POTH1 orthologues revealed the presence of several cytosine/uracil motifs, similar to those present in potato StBEL5 and POTH1 RNAs. Using RT-qPCR assays, we verified the presence of these related transcripts in leaf and root tissues of these five storage root crops. Similar to potato, BEL5-, PTB1/6- and POTH1-like orthologue RNAs from the aforementioned storage root crops exhibited differential accumulation patterns in leaf and storage root tissues. Our results suggest that the PTB1/6-like orthologues and their putative targets, BEL5- and POTH1-like mRNAs, from storage root crops could interact physically, similar to that in potato, and potentially, could function as key molecular signals controlling storage organ development in root crops.

605 Salad crops: Root, bulb, and tuber Crops

USDA-ARS?s Scientific Manuscript database

Root and tuber crops (potato, cassava, sweet potato, and yams) comprise 4 of the 10 major food staples of the world and serve as a major source of energy for the poor of developing nations. Minimal strain placed on agro ecosystems by root and tuber crops highlight their welcomed contribution to the ...

Roots Withstanding their Environment: Exploiting Root System Architecture Responses to Abiotic Stress to Improve Crop Tolerance

PubMed Central

Koevoets, Iko T.; Venema, Jan Henk; Elzenga, J. Theo. M.; Testerink, Christa

2016-01-01

To face future challenges in crop production dictated by global climate changes, breeders and plant researchers collaborate to develop productive crops that are able to withstand a wide range of biotic and abiotic stresses. However, crop selection is often focused on shoot performance alone, as observation of root properties is more complex and asks for artificial and extensive phenotyping platforms. In addition, most root research focuses on development, while a direct link to the functionality of plasticity in root development for tolerance is often lacking. In this paper we review the currently known root system architecture (RSA) responses in Arabidopsis and a number of crop species to a range of abiotic stresses, including nutrient limitation, drought, salinity, flooding, and extreme temperatures. For each of these stresses, the key molecular and cellular mechanisms underlying the RSA response are highlighted. To explore the relevance for crop selection, we especially review and discuss studies linking root architectural responses to stress tolerance. This will provide a first step toward understanding the relevance of adaptive root development for a plant’s response to its environment. We suggest that functional evidence on the role of root plasticity will support breeders in their efforts to include root properties in their current selection pipeline for abiotic stress tolerance, aimed to improve the robustness of crops. PMID:27630659

On the Control of Solute Mass Fluxes and Concentrations Below Fields Irrigated With Low-Quality Water: A Numerical Study

NASA Astrophysics Data System (ADS)

Russo, David

2017-11-01

The main goal of this study was to test the capability of irrigation water-based and soil-based approaches to control nitrate and chloride mass fluxes and concentrations below the root zone of agricultural fields irrigated with treated waste water (TWW). Using numerical simulations of flow and transport in relatively a fine-textured, unsaturated, spatially heterogeneous, flow domain, scenarios examined include: (i) irrigating with TWW only (REF); (ii) irrigation water is substituted between TWW and desalinized water (ADW); (iii) soil includes a capillary barrier (CB) and irrigating with TWW only (CB + TWW); and (iv) combination of (ii) and a CB (CB + ADW). Considering groundwater quality protection, plausible goals are: (i) to minimize solute discharges leaving the root zone, and, (ii) to maximize the probability that solute concentrations leaving the root zone will not exceed a prescribed, critical value. Results of the analyses suggest that in the case of a seasonal crop (a corn field) subject to irrigations only, with respect to the first goal, the CB + TWW and CB + ADW scenarios provide similar, excellent results, better than the ADW scenario; with respect to the second goal, however, the CB + ADW scenario gave substantially better results than the CB + TWW scenario. In the case a multiyear, perennial crop (a citrus orchard), subject to a sequence of irrigation and rainfall periods, for both solutes, and, particularly, nitrate, with respect to the two goals, both the ADW and CB + ADW scenarios perform better than the CB + TWW scenario. As compared with the REF and CB + TWW scenarios, the ADW and CB + ADW scenarios substantially reduce nitrogen mass fluxes to the groundwater and to the atmosphere, and, essentially, did not reduce nitrogen mass fluxes to the trees. Similar results, even better, were demonstrated for a relatively coarse-textured, spatially heterogeneous soil.

Holistic irrigation water management approach based on stochastic soil water dynamics

NASA Astrophysics Data System (ADS)

Alizadeh, H.; Mousavi, S. J.

2012-04-01

Appreciating the essential gap between fundamental unsaturated zone transport processes and soil and water management due to low effectiveness of some of monitoring and modeling approaches, this study presents a mathematical programming model for irrigation management optimization based on stochastic soil water dynamics. The model is a nonlinear non-convex program with an economic objective function to address water productivity and profitability aspects in irrigation management through optimizing irrigation policy. Utilizing an optimization-simulation method, the model includes an eco-hydrological integrated simulation model consisting of an explicit stochastic module of soil moisture dynamics in the crop-root zone with shallow water table effects, a conceptual root-zone salt balance module, and the FAO crop yield module. Interdependent hydrology of soil unsaturated and saturated zones is treated in a semi-analytical approach in two steps. At first step analytical expressions are derived for the expected values of crop yield, total water requirement and soil water balance components assuming fixed level for shallow water table, while numerical Newton-Raphson procedure is employed at the second step to modify value of shallow water table level. Particle Swarm Optimization (PSO) algorithm, combined with the eco-hydrological simulation model, has been used to solve the non-convex program. Benefiting from semi-analytical framework of the simulation model, the optimization-simulation method with significantly better computational performance compared to a numerical Mote-Carlo simulation-based technique has led to an effective irrigation management tool that can contribute to bridging the gap between vadose zone theory and water management practice. In addition to precisely assessing the most influential processes at a growing season time scale, one can use the developed model in large scale systems such as irrigation districts and agricultural catchments. Accordingly, the model has been applied in Dasht-e-Abbas and Ein-khosh Fakkeh Irrigation Districts (DAID and EFID) of the Karkheh Basin in southwest of Iran. The area suffers from the water scarcity problem and therefore the trade-off between the level of deficit and economical profit should be assessed. Based on the results, while the maximum net benefit has been obtained for the stress-avoidance (SA) irrigation policy, the highest water profitability, defined by economical net benefit gained from unit irrigation water volume application, has been resulted when only about 60% of water used in the SA policy is applied.

Partial root-zone drying and conventional deficit irrigation applied during the whole berry growth maintain yield and berry quality in 'Crimson Seedless' table grapes

NASA Astrophysics Data System (ADS)

Pérez-Pastor, Alejandro; Domingo, Rafael; De la Rosa, Jose M.°; Rosario Conesa Saura, M.°

2016-04-01

To compare the effects of partial root-zone drying and conventional deficit irrigation applied during post-veraison and the whole berry growth on water relations, yield and berry quality, one experiment was conducted in a commercial vineyard of 'Crimson Seedless' table grapes. Five irrigation treatments were imposed: (i) Control (CTL) irrigated to 110% of crop evapotranspiration (ETc), (ii) regulated deficit irrigation (RDI) irrigated at 50% of CTL during the non- critical period of post-verasion, (iii) continuous deficit irrigation (DIc), irrigated at 50% of CTL throughout the whole berry growing season, (iv) partial root-zone drying (PRD), irrigated similar to RDI, but alternating the irrigation applied in the dry side every 10-14 days; and (v) continuous partial root-zone drying (PRDc), irrigated as DIc but alternating the irrigation in the dry side every 10-14 days. RDI and PRD received 24% and 28% less water than CTL, respectively. These reductions were higher in DIc and PRDc (65% and 53%, respectively). Total yield was not affected by any DI strategy. Only significantly lower values were observed in the weight and height's berries in respect to CTL. However, the colour parameters evaluated increased in all DI treatments, being slightly higher in DIc and PRDc compared with RDI and PRD. In addition, total soluble solids (TSS) were significantly higher in DIc, compared to other irrigated counterparts. Our findings showed that the application of water deficit during the whole berry growth through the use of DIc and PRDc, can be considered for irrigation scheduling in 'Crimson Seedless' table grapes. Acknowledgements This work has been funded by the European Union LIFE+ project IRRIMAN (LIFE13 ENV/ES/000539).

Estimation of runoff mitigation by morphologically different cover crop root systems

NASA Astrophysics Data System (ADS)

Yu, Yang; Loiskandl, Willibald; Kaul, Hans-Peter; Himmelbauer, Margarita; Wei, Wei; Chen, Liding; Bodner, Gernot

2016-07-01

Hydrology is a major driver of biogeochemical processes underlying the distinct productivity of different biomes, including agricultural plantations. Understanding factors governing water fluxes in soil is therefore a key target for hydrological management. Our aim was to investigate changes in soil hydraulic conductivity driven by morphologically different root systems of cover crops and their impact on surface runoff. Root systems of twelve cover crop species were characterized and the corresponding hydraulic conductivity was measured by tension infiltrometry. Relations of root traits to Gardner's hydraulic conductivity function were determined and the impact on surface runoff was estimated using HYDRUS 2D. The species differed in both rooting density and root axes thickness, with legumes distinguished by coarser axes. Soil hydraulic conductivity was changed particularly in the plant row where roots are concentrated. Specific root length and median root radius were the best predictors for hydraulic conductivity changes. For an intensive rainfall simulation scenario up to 17% less rainfall was lost by surface runoff in case of the coarsely rooted legumes Melilotus officinalis and Lathyrus sativus, and the densely rooted Linum usitatissimum. Cover crops with coarse root axes and high rooting density enhance soil hydraulic conductivity and effectively reduce surface runoff. An appropriate functional root description can contribute to targeted cover crop selection for efficient runoff mitigation.

Partial Root-Zone Drying of Olive (Olea europaea var. 'Chetoui') Induces Reduced Yield under Field Conditions

PubMed Central

Dbara, Soumaya; Haworth, Matthew; Emiliani, Giovani; Ben Mimoun, Mehdi; Gómez-Cadenas, Aurelio; Centritto, Mauro

2016-01-01

The productivity of olive trees in arid and semi-arid environments is closely linked to irrigation. It is necessary to improve the efficiency of irrigation techniques to optimise the amount of olive fruit produced in relation to the volume of water used. Partial root-zone drying (PRD) is a water saving irrigation technique that theoretically allows the production of a root-to-shoot signal that modifies the physiology of the above-ground parts of the plant; specifically reducing stomatal conductance (gs) and improving water use efficiency (WUE). Partial root-zone drying has been successfully applied under field conditions to woody and non-woody crops; yet the few previous trials with olive trees have produced contrasting results. Thirty year-old olive trees (Olea europaea ‘var. Chetoui’) in a Tunisian grove were exposed to four treatments from May to October for three-years: ‘control’ plants received 100% of the potential evapotranspirative demand (ETc) applied to the whole root-zone; ‘PRD100’ were supplied with an identical volume of water to the control plants alternated between halves of the root-zone every ten-days; ‘PRD50’ were given 50% of ETc to half of the root-system, and; ‘rain-fed’ plants received no supplementary irrigation. Allowing part of the root-zone to dry resulted in reduced vegetative growth and lower yield: PRD100 decreased yield by ~47% during productive years. During the less productive years of the alternate bearing cycle, irrigation had no effect on yield; this suggests that withholding of water during ‘off-years’ may enhance the effectiveness of irrigation over a two-year cycle. The amount and quality of oil within the olive fruit was unaffected by the irrigation treatment. Photosynthesis declined in the PRD50 and rain-fed trees due to greater diffusive limitations and reduced biochemical uptake of CO2. Stomatal conductance and the foliar concentration of abscisic acid (ABA) were not altered by PRD100 irrigation, which may indicate the absence of a hormonal root-to-shoot signal. Rain-fed and PRD50 treatments induced increased stem water potential and increased foliar concentrations of ABA, proline and soluble sugars. The stomata of the olive trees were relatively insensitive to super-ambient increases in [CO2] and higher [ABA]. These characteristics of ‘hydro-passive’ stomatal behaviour indicate that the ‘Chetoui’ variety of olive tree used in this study lacks the physiological responses required for the successful exploitation of PRD techniques to increase yield and water productivity. Alternative irrigation techniques such as partial deficit irrigation may be more suitable for ‘Chetoui’ olive production. PMID:27315081

Efficacy of Cotton Root Destruction and Winter Cover Crops for Suppression of Hoplolaimus columbus.

PubMed

Davis, R F; Baird, R E; McNeil, R D

2000-12-01

The efficacy of rye (Secale cereale) and wheat (Triticum aestivum) winter cover crops and cotton stalk and root destruction (i.e., pulling them up) were evaluated in field tests during two growing seasons for Hoplolaimus columbus management in cotton. The effect of removing debris from the field following root destruction also was evaluated. Wheat and rye produced similar amounts of biomass, and both crops produced more biomass (P

Efficacy of Cotton Root Destruction and Winter Cover Crops for Suppression of Hoplolaimus columbus

PubMed Central

Davis, R. F.; Baird, R. E.; McNeil, R. D.

2000-01-01

The efficacy of rye (Secale cereale) and wheat (Triticum aestivum) winter cover crops and cotton stalk and root destruction (i.e., pulling them up) were evaluated in field tests during two growing seasons for Hoplolaimus columbus management in cotton. The effect of removing debris from the field following root destruction also was evaluated. Wheat and rye produced similar amounts of biomass, and both crops produced more biomass (P ≤ 0.05) following cotton root destruction. Cover crops did not suppress H. columbus population levels or increase subsequent cotton yields. Cotton root destruction did not affect cotton stand or plant height the following year. Cotton root destruction lowered (P ≤ 0.05) H. columbus population levels at planting in 1996 but not in 1997, but cotton yield was not increased by root destruction in either year. Removing debris following root destruction did not lower H. columbus levels compared to leaving debris on the soil surface. This study suggests that a rye or wheat cover crop or cotton root destruction following harvest is ineffective for H. columbus management in cotton. PMID:19271009

A coupled hydrogeophysical modeling approach to estimate soil moisture redistribution in the face of land use changes

NASA Astrophysics Data System (ADS)

Kuhl, A.; Hyndman, D. W.; Van Dam, R. L.

2013-12-01

Predicting the impacts of land use changes on local water balances requires knowledge of the detailed water uptake dynamics associated with different plants. Mapping the extent of roots and quantifying their relationships to the movement of water through the vadose zone is critical to better understand this aspect of plant physiology. Electrical resistivity (ER) methods offer the ability to non-invasively capture this crucial hydrologic information at relevant scales, bridging the spatial gap between remote sensing and in-situ point measurements. Our research uses a coupled hydrogeophysical model to image the boundary of root zones and the control roots have on hydrologic fluxes. Advantages of this approach include: incorporating basic hydrologic parameters to constrain the model physics and using a forward geophysical model to avoid errors related to non-unique solutions and imaging. The model optimizes root distributions to correlate with soil moisture variability characterized by ER surveys, maximizing the value of the geophysics and yielding information that can answer questions related to water budgets in the face of land use and climate changes. To validate this approach, preliminary ER data was collected from two sites in south-east Michigan instrumented with permanent lines of electrodes, enabling consistent surveys through time. One site traverses a progression of vegetation types over a relatively short distance, reflecting the type of natural plant succession associated with passive land use changes in the area. Early interpretations of the ER results indicate that apparent resistivity is controlled by the varying plant regimes. The other is part of the Great Lakes Bioenergy Research Center, spanning a stand of maize, which is ideal for initial models because root zone development has been extensively researched for this crop.

Tree growth and management in Ugandan agroforestry systems: effects of root pruning on tree growth and crop yield.

PubMed

Wajja-Musukwe, Tellie-Nelson; Wilson, Julia; Sprent, Janet I; Ong, Chin K; Deans, J Douglas; Okorio, John

2008-02-01

Tree root pruning is a potential tool for managing belowground competition when trees and crops are grown together in agroforestry systems. We investigated the effects of tree root pruning on shoot growth and root distribution of Alnus acuminata (H.B. & K.), Casuarina equisetifolia L., Grevillea robusta A. Cunn. ex R. Br., Maesopsis eminii Engl. and Markhamia lutea (Benth.) K. Schum. and on yield of adjacent crops in sub-humid Uganda. The trees were 3 years old at the commencement of the study, and most species were competing strongly with crops. Tree roots were pruned 41 months after planting by cutting and back-filling a trench to a depth of 0.3 m, at a distance of 0.3 m from the trees, on one side of the tree row. The trench was reopened and roots recut at 50 and 62 months after planting. We assessed the effects on tree growth and root distribution over a 3 year period, and crop yield after the third root pruning at 62 months. Overall, root pruning had only a slight effect on aboveground tree growth: height growth was unaffected and diameter growth was reduced by only 4%. A substantial amount of root regrowth was observed by 11 months after pruning. Tree species varied in the number and distribution of roots, and C. equisetifolia and M. lutea had considerably more roots per unit of trunk volume than the other species, especially in the surface soil layers. Casuarina equisetifolia and M. eminii were the tree species most competitive with crops and G. robusta and M. lutea the least competitive. Crop yield data provided strong evidence of the redistribution of root activity following root pruning, with competition increasing on the unpruned side of tree rows. Thus, one-sided root pruning will be useful in only a few circumstances.

Anticipating on amplifying water stress: Optimal crop production supported by anticipatory water management

NASA Astrophysics Data System (ADS)

Bartholomeus, Ruud; van den Eertwegh, Gé; Simons, Gijs

2015-04-01

Agricultural crop yields depend largely on the soil moisture conditions in the root zone. Drought but especially an excess of water in the root zone and herewith limited availability of soil oxygen reduces crop yield. With ongoing climate change, more prolonged dry periods alternate with more intensive rainfall events, which changes soil moisture dynamics. With unaltered water management practices, reduced crop yield due to both drought stress and waterlogging will increase. Therefore, both farmers and water management authorities need to be provided with opportunities to reduce risks of decreasing crop yields. In The Netherlands, agricultural production of crops represents a market exceeding 2 billion euros annually. Given the increased variability in meteorological conditions and the resulting larger variations in soil moisture contents, it is of large economic importance to provide farmers and water management authorities with tools to mitigate risks of reduced crop yield by anticipatory water management, both at field and at regional scale. We provide the development and the field application of a decision support system (DSS), which allows to optimize crop yield by timely anticipation on drought and waterlogging situations. By using this DSS, we will minimize plant water stress through automated drainage and irrigation management. In order to optimize soil moisture conditions for crop growth, the interacting processes in the soil-plant-atmosphere system need to be considered explicitly. Our study comprises both the set-up and application of the DSS on a pilot plot in The Netherlands, in order to evaluate its implementation into daily agricultural practice. The DSS focusses on anticipatory water management at the field scale, i.e. the unit scale of interest to a farmer. We combine parallel field measurements ('observe'), process-based model simulations ('predict'), and the novel Climate Adaptive Drainage (CAD) system ('adjust') to optimize soil moisture conditions. CAD is used both for controlled drainage practices and for sub-irrigation. The DSS has a core of the plot-scale SWAP model (soil-water-atmosphere-plant), extended with a process-based module for the simulation of oxygen stress for plant roots. This module involves macro-scale and micro-scale gas diffusion, as well as the plant physiological demand of oxygen, to simulate transpiration reduction due to limited oxygen availability. Continuous measurements of soil moisture content, groundwater level, and drainage level are used to calibrate the SWAP model each day. This leads to an optimal reproduction of the actual soil moisture conditions by data assimilation in the first step in the DSS process. During the next step, near-future (+10 days) soil moisture conditions and drought and oxygen stress are predicted using weather forecasts. Finally, optimal drainage levels to minimize stress are simulated, which can be established by CAD. Linkage to a grid-based hydrological simulation model (SPHY) facilitates studying the spatial dynamics of soil moisture and associated implications for management at the regional scale. Thus, by using local-scale measurements, process-based models and weather forecasts to anticipate on near-future conditions, not only field-scale water management but also regional surface water management can be optimized both in space and time.

Developing High-resolution Soil Database for Regional Crop Modeling in East Africa

NASA Astrophysics Data System (ADS)

Han, E.; Ines, A. V. M.

2014-12-01

The most readily available soil data for regional crop modeling in Africa is the World Inventory of Soil Emission potentials (WISE) dataset, which has 1125 soil profiles for the world, but does not extensively cover countries Ethiopia, Kenya, Uganda and Tanzania in East Africa. Another dataset available is the HC27 (Harvest Choice by IFPRI) in a gridded format (10km) but composed of generic soil profiles based on only three criteria (texture, rooting depth, and organic carbon content). In this paper, we present a development and application of a high-resolution (1km), gridded soil database for regional crop modeling in East Africa. Basic soil information is extracted from Africa Soil Information Service (AfSIS), which provides essential soil properties (bulk density, soil organic carbon, soil PH and percentages of sand, silt and clay) for 6 different standardized soil layers (5, 15, 30, 60, 100 and 200 cm) in 1km resolution. Soil hydraulic properties (e.g., field capacity and wilting point) are derived from the AfSIS soil dataset using well-proven pedo-transfer functions and are customized for DSSAT-CSM soil data requirements. The crop model is used to evaluate crop yield forecasts using the new high resolution soil database and compared with WISE and HC27. In this paper we will present also the results of DSSAT loosely coupled with a hydrologic model (VIC) to assimilate root-zone soil moisture. Creating a grid-based soil database, which provides a consistent soil input for two different models (DSSAT and VIC) is a critical part of this work. The created soil database is expected to contribute to future applications of DSSAT crop simulation in East Africa where food security is highly vulnerable.

Root characteristics of cover crops and their erosion-reducing potential during concentrated runoff

NASA Astrophysics Data System (ADS)

de Baets, S.; Poesen, J.

2009-04-01

In the loam region in central Belgium, a lot of research has been conducted on the effects of cover crops for preventing splash and interrill erosion and on their nutrient pumping effectiveness. As this is a very effective erosion and environment conservation technique, planting cover crops during the winter season is widely applied in the loess belt. Most of these cover crops freeze at the beginning of the winter period. Consequently, the above-ground biomass becomes less effective in protecting the soil from water erosion. Apart from the effects of the above-ground biomass in protecting the soil against raindrop impacts and reducing flow velocities by the retarding effects of their stems, plant roots also play an important role in improving soil strength. Previous research showed that roots contribute to a large extent to the resistance of topsoils against concentrated flow erosion. Unfortunately, information on root properties of common cover crops (e.g. Sinapis alba, Phacelia tanacetifoli, Lolium perenne, Avena sativa, Secale cereale, Raphanus sativus subsp. oleiferus) is very scarce. Therefore, root density distribution with depth and their erosion-reducing effects during concentrated flow erosion were assessed by conducting root auger measurements and concentrated flow experiments at the end of the growth period (December). The preliminary results indicate that the studied cover crops are not equally effective in preventing soil loss by concentrated flow erosion at the end of the growing season. Cover crops with thick roots, such as Sinapis alba and Raphanus sativus subsp. oleiferus are less effective than cover crops with fine-branched roots such as Phacelia tanacetifoli, Lolium perenne (Ryegrass), Avena sativa (Oats) and Secale cereale (Rye) in preventing soil losses by concentrated flow erosion. These results enable soil managers to select the most suitable crops and maximize soil protection.

Contrasting responses of root morphology and root-exuded organic acids to low phosphorus availability in three important food crops with divergent root traits.

PubMed

Wang, Yan-Liang; Almvik, Marit; Clarke, Nicholas; Eich-Greatorex, Susanne; Øgaard, Anne Falk; Krogstad, Tore; Lambers, Hans; Clarke, Jihong Liu

2015-08-17

Phosphorus (P) is an important element for crop productivity and is widely applied in fertilizers. Most P fertilizers applied to land are sorbed onto soil particles, so research on improving plant uptake of less easily available P is important. In the current study, we investigated the responses in root morphology and root-exuded organic acids (OAs) to low available P (1 μM P) and sufficient P (50 μM P) in barley, canola and micropropagated seedlings of potato-three important food crops with divergent root traits, using a hydroponic plant growth system. We hypothesized that the dicots canola and tuber-producing potato and the monocot barley would respond differently under various P availabilities. WinRHIZO and liquid chromatography triple quadrupole mass spectrometry results suggested that under low P availability, canola developed longer roots and exhibited the fastest root exudation rate for citric acid. Barley showed a reduction in root length and root surface area and an increase in root-exuded malic acid under low-P conditions. Potato exuded relatively small amounts of OAs under low P, while there was a marked increase in root tips. Based on the results, we conclude that different crops show divergent morphological and physiological responses to low P availability, having evolved specific traits of root morphology and root exudation that enhance their P-uptake capacity under low-P conditions. These results could underpin future efforts to improve P uptake of the three crops that are of importance for future sustainable crop production. Published by Oxford University Press on behalf of the Annals of Botany Company.

Multisensor Capacitance Probes for Simultaneously Monitoring Rice Field Soil-Water- Crop-Ambient Conditions.

PubMed

Brinkhoff, James; Hornbuckle, John; Dowling, Thomas

2017-12-26

Multisensor capacitance probes (MCPs) have traditionally been used for soil moisture monitoring and irrigation scheduling. This paper presents a new application of these probes, namely the simultaneous monitoring of ponded water level, soil moisture, and temperature profile, conditions which are particularly important for rice crops in temperate growing regions and for rice grown with prolonged periods of drying. WiFi-based loggers are used to concurrently collect the data from the MCPs and ultrasonic distance sensors (giving an independent reading of water depth). Models are fit to MCP water depth vs volumetric water content (VWC) characteristics from laboratory measurements, variability from probe-to-probe is assessed, and the methodology is verified using measurements from a rice field throughout a growing season. The root-mean-squared error of the water depth calculated from MCP VWC over the rice growing season was 6.6 mm. MCPs are used to simultaneously monitor ponded water depth, soil moisture content when ponded water is drained, and temperatures in root, water, crop and ambient zones. The insulation effect of ponded water against cold-temperature effects is demonstrated with low and high water levels. The developed approach offers advantages in gaining the full soil-plant-atmosphere continuum in a single robust sensor.

7 CFR 301.86-5 - Issuance and cancellation of certificates and limited permits.

Code of Federal Regulations, 2011 CFR

2011-01-01

... plant. (3) Certification requirements for potatoes for consumption, root crops for consumption, garden... for consumption, root crops intended for consumption, garden or dry beans, or peas from the quarantined area only if the field in which the potatoes, root crops, garden or dry beans, or peas were grown...

7 CFR 301.86-5 - Issuance and cancellation of certificates and limited permits.

Code of Federal Regulations, 2014 CFR

2014-01-01

... plant. (3) Certification requirements for potatoes for consumption, root crops for consumption, garden... for consumption, root crops intended for consumption, garden or dry beans, or peas from the quarantined area only if the field in which the potatoes, root crops, garden or dry beans, or peas were grown...

7 CFR 301.86-5 - Issuance and cancellation of certificates and limited permits.

Code of Federal Regulations, 2012 CFR

2012-01-01

... plant. (3) Certification requirements for potatoes for consumption, root crops for consumption, garden... for consumption, root crops intended for consumption, garden or dry beans, or peas from the quarantined area only if the field in which the potatoes, root crops, garden or dry beans, or peas were grown...

Improving crop nutrient efficiency through root architecture modifications.

PubMed

Li, Xinxin; Zeng, Rensen; Liao, Hong

2016-03-01

Improving crop nutrient efficiency becomes an essential consideration for environmentally friendly and sustainable agriculture. Plant growth and development is dependent on 17 essential nutrient elements, among them, nitrogen (N) and phosphorus (P) are the two most important mineral nutrients. Hence it is not surprising that low N and/or low P availability in soils severely constrains crop growth and productivity, and thereby have become high priority targets for improving nutrient efficiency in crops. Root exploration largely determines the ability of plants to acquire mineral nutrients from soils. Therefore, root architecture, the 3-dimensional configuration of the plant's root system in the soil, is of great importance for improving crop nutrient efficiency. Furthermore, the symbiotic associations between host plants and arbuscular mycorrhiza fungi/rhizobial bacteria, are additional important strategies to enhance nutrient acquisition. In this review, we summarize the recent advances in the current understanding of crop species control of root architecture alterations in response to nutrient availability and root/microbe symbioses, through gene or QTL regulation, which results in enhanced nutrient acquisition. © 2015 Institute of Botany, Chinese Academy of Sciences.

New insights to lateral rooting: Differential responses to heterogeneous nitrogen availability among maize root types

PubMed Central

Yu, Peng; White, Philip J; Li, Chunjian

2015-01-01

Historical domestication and the "Green revolution" have both contributed to the evolution of modern, high-performance crops. Together with increased irrigation and application of chemical fertilizers, these efforts have generated sufficient food for the growing global population. Root architecture, and in particular root branching, plays an important role in the acquisition of water and nutrients, plant performance, and crop yield. Better understanding of root growth and responses to the belowground environment could contribute to overcoming the challenges faced by agriculture today. Manipulating the abilities of crop root systems to explore and exploit the soil environment could enable plants to make the most of soil resources, increase stress tolerance and improve grain yields, while simultaneously reducing environmental degradation. In this article it is noted that the control of root branching, and the responses of root architecture to nitrate availability, differ between root types and between plant species. Since the control of root branching depends upon both plant species and root type, further work is urgently required to determine the appropriate genes to manipulate to improve resource acquisition by specific crops. PMID:26443081

New insights to lateral rooting: Differential responses to heterogeneous nitrogen availability among maize root types.

PubMed

Yu, Peng; White, Philip J; Li, Chunjian

2015-01-01

Historical domestication and the "Green revolution" have both contributed to the evolution of modern, high-performance crops. Together with increased irrigation and application of chemical fertilizers, these efforts have generated sufficient food for the growing global population. Root architecture, and in particular root branching, plays an important role in the acquisition of water and nutrients, plant performance, and crop yield. Better understanding of root growth and responses to the belowground environment could contribute to overcoming the challenges faced by agriculture today. Manipulating the abilities of crop root systems to explore and exploit the soil environment could enable plants to make the most of soil resources, increase stress tolerance and improve grain yields, while simultaneously reducing environmental degradation. In this article it is noted that the control of root branching, and the responses of root architecture to nitrate availability, differ between root types and between plant species. Since the control of root branching depends upon both plant species and root type, further work is urgently required to determine the appropriate genes to manipulate to improve resource acquisition by specific crops.

Shaping an Optimal Soil by Root-Soil Interaction.

PubMed

Jin, Kemo; White, Philip J; Whalley, William R; Shen, Jianbo; Shi, Lei

2017-10-01

Crop production depends on the availability of water and mineral nutrients, and increased yields might be facilitated by a greater focus on roots-soil interactions. Soil properties affecting plant growth include drought, compaction, nutrient deficiency, mineral toxicity, salinity, and submergence. Plant roots respond to the soil environment both spatially and temporally by avoiding stressful soil environments and proliferating in more favorable environments. We observe that crops can be bred for specific root architectural and biochemical traits that facilitate soil exploration and resource acquisition, enabling greater crop yields. These root traits affect soil physical and chemical properties and might be utilized to improve the soil for subsequent crops. We argue that optimizing root-soil interactions is a prerequisite for future food security. Copyright © 2017 Elsevier Ltd. All rights reserved.

Influence of Rotation Crops on the Strawberry Pathogens Pratylenchus penetrans, Meloidogyne hapla, and Rhizoctonia fragariae

PubMed Central

LaMondia, J. A.

1999-01-01

Field microplot, small plot, and greenhouse experiments were conducted to determine the effects of rotation crops on Pratylenchus penetrans, Meloidogyne hapla, and Rhizoctonia fragariae populations. Extraction of P. penetrans from roots and soil in microplots and field plots planted to rotation crops was highest for Garry oat, lowest for Triple S sorgho-sudangrass and Saia oat, and intermediate for strawberry, buckwheat, and canola. Isolation of R. fragariae from bait roots was highest for strawberry and canola after 2 years of rotation and lowest for Saia oat. Nematode extraction from roots of rotation crops in field soils was generally higher than from roots in microplots. Grasses were nonhosts of M. hapla. Strawberry, canola, and buckwheat supported root-knot populations over time, but there were no differences in nematode numbers regardless of crop after one season of strawberry growth. Garry oat, canola, and, to a lesser extent, buckwheat supported large populations of P. penetrans without visible root symptoms. Strawberry plants supported fewer nematodes due to root damage. Nematode numbers from soil were less than from roots for all crops. While there were similar trends for pathogen recovery after more than 1 year of strawberry growth following rotation, differences in pathogen density and fruit yield were not significant. In the greenhouse, P. penetrans populations in roots and soil in pots were much higher for Garry oat than for Saia oat. Total P. penetrans adult and juvenile numbers per pot ranged from 40 to 880 (mean = 365.6) for Garry oat and 0 to 40 (mean = 8.7) for Saia oat. Production of Saia oat as a rotation crop may be a means of managing strawberry nematodes and black root rot in Connecticut. PMID:19270931

Evapotranspiration and Dual Crop Coefficients Sonisa Sharma1, Ayse Irmak12, Anne Parkhurst3, Elizabeth walter-Shea1 and Kenneth G. Hubbard1 1School of Natural Resources, 2Civil Engineering, 3Departments of Statistics, University of Nebraska-Lincoln

NASA Astrophysics Data System (ADS)

Sharma, S.

2012-12-01

Accurate estimation of water content in the crop root zone is most important for water conservation and management practices like irrigation. The objective of this study is to use the FA0-56 dual crop cefficients: basal crop coefficient Kcb and the soil evaporation coefficient Ke for a large corn/soybean field in the year 2005 at the Mead Turf Farm in the state of Nebraska, USA..Dual crop coefficients can be used to estimate both transpiration from crops and evaporation from soil. The Kcb has a low value of 0.15(K cb, in) during the initial period, increases rapidly to a maximum of 1.14 (K cb, mid) for the entire midseason and decreases rapidly to 0.5 at the end of the corn growing season (K cb,end). When examined together with precipitation, the dual crop coefficient was higher following rainfall or irrigation, as expected. The data suggests that the dual crop coefficient approach is a good estimation of water loss from well-watered crops. Irrigation can be scheduled to replace the loss of water from the crop/soil system. Similarly, when we compared the measured daily ET and the ET calculated from dual crop coefficients, it gives 98 % R2.; Comparision of calculated ET from dual crop coefficient appraoch with Weather Station ET

The Integrated Role of Water Availability, Nutrient Dynamics, and Xylem Hydraulic Dysfunction on Plant Rooting Strategies in Managed and Natural Ecosystems

NASA Astrophysics Data System (ADS)

Mackay, D. S.; Savoy, P.; Pleban, J. R.; Tai, X.; Ewers, B. E.

2015-12-01

Plants adapt or acclimate to changing environments in part by allocating biomass to roots and leaves to strike a balance between water and nutrient uptake requirements on the one hand and growth and hydraulic safety on the other hand. In a recent study examining experimental drought with the TREES model, which couples plant ecophysiology with rhizosphere-and-xylem hydraulics, we hypothesized that the asynchronous nature of soil water availability and xylem repair supported root-to-leaf area (RLA) proportionality that favored long-term survival over short-term carbon gain or water use. To investigate this as a possible general principal of plant adjustment to changing environmental conditions, TREES was modified to allocate carbon to fine and coarse roots organized in ten orders differing in biomass allocated per unit absorbing root area, root lifespan, and total absorbing root area in each of several soil-root zones with depth. The expanded model allowed for adjustment of absorbing root area and rhizosphere volume based on available carbohydrate production and nitrogen (N) availability, resulting in dynamic expansion and contraction of the supply-side of the rhizosphere-plant hydraulics and N uptake capacity in response to changing environmental conditions and plant-environment asynchrony. The study was conducted partly in a controlled experimental setting with six genotypes of a widely grown crop species, Brassica rapa. The implications for forests were investigated in controlled experiments and at Fluxnet sites representing temperate mixed forests, semi-arid evergreen needle-leaf, and Mediterranean biomes. The results showed that the effects of N deficiency on total plant growth was modulated by a relative increase in fine root biomass representing a larger absorbing root volume per unit biomass invested. We found that the total absorbing root area per unit leaf area was consistently lower than that needed to maximize short-term water uptake and carbohydrate gain. Moreover, the acclimated RLA fell within a small range for both crops and trees despite changing environmental conditions, demonstrating an adaptation that was consistent with empiricism on fine roots and thus pointing to a fundamental connection between ecological and hydrological processes.

Rooting for food security in Sub-Saharan Africa

NASA Astrophysics Data System (ADS)

Guilpart, Nicolas; Grassini, Patricio; van Wart, Justin; Yang, Haishun; van Ittersum, Martin K.; van Bussel, Lenny G. J.; Wolf, Joost; Claessens, Lieven; Leenaars, Johan G. B.; Cassman, Kenneth G.

2017-11-01

There is a persistent narrative about the potential of Sub-Saharan Africa (SSA) to be a ‘grain breadbasket’ because of large gaps between current low yields and yield potential with good management, and vast land resources with adequate rainfall. However, rigorous evaluation of the extent to which soils can support high, stable yields has been limited by lack of data on rootable soil depth of sufficient quality and spatial resolution. Here we use location-specific climate data, a robust spatial upscaling approach, and crop simulation to assess sensitivity of rainfed maize yields to root-zone water holding capacity. We find that SSA could produce a modest maize surplus but only if rootable soil depths are comparable to that of other major breadbaskets, such as the US Corn Belt and South American Pampas, which is unlikely based on currently available information. Otherwise, producing surplus grain for export will depend on expansion of crop area with the challenge of directing this expansion to regions where soil depth and rainfall are supportive of high and consistent yields, and where negative impacts on biodiversity are minimal.

Comment on 'Shang S. 2012. Calculating actual crop evapotranspiration under soil water stress conditions with appropriate numerical methods and time step. Hydrological Processes 26: 3338-3343. DOI: 10.1002/hyp.8405'

NASA Technical Reports Server (NTRS)

Yatheendradas, Soni; Narapusetty, Balachandrudu; Peters-Lidard, Christa; Funk, Christopher; Verdin, James

2014-01-01

A previous study analyzed errors in the numerical calculation of actual crop evapotranspiration (ET(sub a)) under soil water stress. Assuming no irrigation or precipitation, it constructed equations for ET(sub a) over limited soil-water ranges in a root zone drying out due to evapotranspiration. It then used a single crop-soil composite to provide recommendations about the appropriate usage of numerical methods under different values of the time step and the maximum crop evapotranspiration (ET(sub c)). This comment reformulates those ET(sub a) equations for applicability over the full range of soil water values, revealing a dependence of the relative error in numerical ET(sub a) on the initial soil water that was not seen in the previous study. It is shown that the recommendations based on a single crop-soil composite can be invalid for other crop-soil composites. Finally, a consideration of the numerical error in the time-cumulative value of ET(sub a) is discussed besides the existing consideration of that error over individual time steps as done in the previous study. This cumulative ET(sub a) is more relevant to the final crop yield.

Cover crop root, shoot, and rhizodeposit contributions to soil carbon in a no- till corn bioenergy cropping system

NASA Astrophysics Data System (ADS)

Austin, E.; Grandy, S.; Wickings, K.; McDaniel, M. D.; Robertson, P.

2016-12-01

Crop residues are potential biofuel feedstocks, but residue removal may result in reduced soil carbon (C). The inclusion of a cover crop in a corn bioenergy system could provide additional biomass and as well as help to mitigate the negative effects of residue removal by adding belowground C to stable soil C pools. In a no-till continuous corn bioenergy system in the northern portion of the US corn belt, we used 13CO2 pulse labeling to trace C in a winter rye (secale cereale) cover crop into different soil C pools for two years following rye termination. Corn stover contributed 66 (another 163 was in harvested corn stover), corn roots 57, rye shoot 61, rye roots 59, and rye rhizodeposits 27 g C m-2 to soil C. Five months following cover crop termination, belowground cover crop inputs were three times more likely to remain in soil C pools and much of the root-derived C was in mineral- associated soil fractions. Our results underscore the importance of cover crop roots vs. shoots as a source of soil C. Belowground C inputs from winter cover crops could substantially offset short term stover removal in this system.

Application of time-lapse ERT to characterize soil-water-disease interactions of young citrus trees

NASA Astrophysics Data System (ADS)

Peddinti, S. R.; Kbvn, D. P.; Ranjan, S.; R M, P. G.

2016-12-01

Vidarbha region in Maharashtra, India is witnessing a continuous decrease in orange crop due to the propagation of `Phytopthora root rot', a water mold disease. Under favorable conditions, the disease causing bacteria can attack the plant root system and propagates to the surface (where first visual impression is made), making difficult to regain the plant health. This research aims at co-relating eco-hydrological fluxes with disease sensing parameters of orange trees. Two experimental plots around a healthy-young and declined-young orange trees were selected for our analysis. A 3-dimentional electrical resistivity tomography (ERT) (Figure) was carried at each plot to quantify the soil moisture distribution at a vadose zone. Pedo-electric relations were obtained considering modified Archie's law parameters. ERT derived moisture data was validated with time domain reflectometry (TDR) point observations. Soil moisture profiles derived from ERT were observed to be differ marginally between the two plots. Disease quantification was done by estimating the density of Phytopthora spp. inoculum in soils sampled along the root zone. Identification of Phytopthora spp. was done in the laboratory using taxonomic and morphologic criteria of the colonies. Spatio-temporal profiles of soil moisture and inoculum density were then co-related to comment on the eco-hydrological fluxes contributing to the health propagation of root rot in orange tree for implementing effective water management practices.

Rhizospheric soil and root endogenous fungal diversity and composition in response to continuous Panax notoginseng cropping practices.

PubMed

Tan, Yong; Cui, Yinshan; Li, Haoyu; Kuang, Anxiu; Li, Xiaoran; Wei, Yunlin; Ji, Xiuling

2017-01-01

Rhizosphere and endophytic fungal communities are considered critically important for plant health and soil fertility. In response to continuous cropping, Panax notoginseng becomes vulnerable to attack by fungal pathogens. In the present study, culture-independent Illumina MiSeq was used to investigate the rhizospheric and root endophytic fungi in response to continuous Panax notoginseng cropping practices. The results demonstrated that fungal diversity is increased inside the roots and in rhizospheric. Ascomycota, Zygomycota, Basidiomycota and Chytridiomycota were the dominant phyla detected during the continuous cropping of Panax notoginseng. The fungal diversity in the rhizospheric soil and roots of root-rot P. notoginseng plants are less than that of healthy plants in the same cultivating year, thus showing that root-rot disease also affects the community structure and diversity of rhizospheric and root endophytic fungi. Similarities in the major fungal components show that endophytic fungal communities are similar to rhizospheric soil fungal community based on a specialized subset of organisms. Canonical correspondence analysis on the fungal communities in root-rot rhizospheric from both healthy plants and rotation soils reveals that the soil pH and organic matter have the greatest impact upon the microbial community composition during continuous cropping, whereas soil nutrition status does not significantly affect the fungal community composition in response to continuous cropping practices. In addition, the results suggest that the unclassified genera Leotiomycetes, Cylindrocarpon, Fusarium and Mycocentrospora are shown as the potential pathogens which are responsible for the obstacles in continuous cropping of P. notoginseng. Further exploration of these potential pathogens might be useful for the biological control of continuous cropping of P. notoginseng. Copyright © 2016 Elsevier GmbH. All rights reserved.

Implications for water use of a shift from annual to perennial crops - A stochastic modelling approach based on a trait meta-analysis

NASA Astrophysics Data System (ADS)

Vico, Giulia; Brunsell, Nathaniel

2017-04-01

The projected population growth and changes in climate and dietary habits will further increase the pressure on water resources globally. Within precision farming, a host of technical solutions has been developed to reduce water consumption for agricultural uses. The next frontier for a more sustainable agriculture is the combination of reduced water requirements with enhanced ecosystem services. Currently, staple grains are obtained from annuals crops. A shift from annual to perennial crops has been suggested as a way to enhance ecosystem services. In fact, perennial plants, with their continuous soil cover and the higher allocation of resources to the below ground, contribute to the reduction of soil erosion and nutrient losses, while enhancing carbon sequestration in the root zone. Nevertheless, the net effect of a shift to perennial crops on water use for agriculture is still unknown, despite its relevance for the sustainability of such a shift. We explore here the implications for water management at the field- to farm-scale of a shift from annual to perennial crops, under rainfed and irrigated agriculture. A probabilistic description of the soil water balance and crop development is employed to quantify water requirements and yields and their inter-annual variability, as a function of rainfall patterns, soil and crop features. Optimal irrigation strategies are thus defined in terms of maximization of yield and minimization of required irrigation volumes and their inter-annual variability. The probabilistic model is parameterized based on an extensive meta-analysis of traits of co-generic annual and perennial species to explore the consequences for water requirements of shifting from annual to perennial crops under current and future climates. We show that the larger and more developed roots of perennial crops may allow a better exploitation of soil water resources and a reduction of yield variability with respect to annual species. At the same time, perennial crops are larger and may require adequate water supply for longer periods, thus leading to higher water requirements. Furthermore, they lead to lower yields per unit area, thus requiring irrigation of larger areas.

Moving forward with fine-root definitions and research

DOE PAGES

McCormack, M. Luke; Iversen, Colleen M.; Eissenstat, David M.

2016-08-30

Here, in the letter published in this issue of New Phytologist (pp. 310-312), 'Fine roots - functional definition expanded to crop species?' Dr. Zobel emphasizes the importance of heterogeneity within crop-root systems.

Assimilation of Remotely Sensed Soil Moisture Profiles into a Crop Modeling Framework for Reliable Yield Estimations

NASA Astrophysics Data System (ADS)

Mishra, V.; Cruise, J.; Mecikalski, J. R.

2017-12-01

Much effort has been expended recently on the assimilation of remotely sensed soil moisture into operational land surface models (LSM). These efforts have normally been focused on the use of data derived from the microwave bands and results have often shown that improvements to model simulations have been limited due to the fact that microwave signals only penetrate the top 2-5 cm of the soil surface. It is possible that model simulations could be further improved through the introduction of geostationary satellite thermal infrared (TIR) based root zone soil moisture in addition to the microwave deduced surface estimates. In this study, root zone soil moisture estimates from the TIR based Atmospheric Land Exchange Inverse (ALEXI) model were merged with NASA Soil Moisture Active Passive (SMAP) based surface estimates through the application of informational entropy. Entropy can be used to characterize the movement of moisture within the vadose zone and accounts for both advection and diffusion processes. The Principle of Maximum Entropy (POME) can be used to derive complete soil moisture profiles and, fortuitously, only requires a surface boundary condition as well as the overall mean moisture content of the soil column. A lower boundary can be considered a soil parameter or obtained from the LSM itself. In this study, SMAP provided the surface boundary while ALEXI supplied the mean and the entropy integral was used to tie the two together and produce the vertical profile. However, prior to the merging, the coarse resolution (9 km) SMAP data were downscaled to the finer resolution (4.7 km) ALEXI grid. The disaggregation scheme followed the Soil Evaporative Efficiency approach and again, all necessary inputs were available from the TIR model. The profiles were then assimilated into a standard agricultural crop model (Decision Support System for Agrotechnology, DSSAT) via the ensemble Kalman Filter. The study was conducted over the Southeastern United States for the growing seasons from 2015-2017. Soil moisture profiles compared favorably to in situ data and simulated crop yields compared well with observed yields.

Effects of crop residues of sunflower (Helianthus annuus), maize (Zea mays L.) and soybean (Glycine max) on growth and seed yields of sunflower.

PubMed

Srisa-Ard, K

2007-04-15

This pot experiment was carried out at Suranaree Technology University Experimental Farm, Northeast Thailand to investigate effects of crop residues of sunflower, maize and soybean on total dry weight, top dry weight, plant height, root dry weight and seed yield of sunflower plants with the use of Korat soil series (Oxic Paleustults) during the rainy season (July-October) of the 2001. The experiment was laid in a split plot arranged in a Completely Randomized Design (CRD) with four replications where the crop residues of maize, sunflower and soybean were used as main plots. Whilst crop residues of roots, top growth and roots+top growth were used as subplots. The results showed that crop residues derived from roots of both sunflower and soybean plants had their significant inhibition effects of allelopathic substances on plant height, root dry weight, top growth dry weight and total dry weight plant(-1) of the sunflower plants than those derived from top growth of both crops alone (sunflower and soybean). Maize plant residues had no significant inhibition effect on growth of subsequent crop of sunflower.

Matching soil salinization and cropping systems in communally managed irrigation schemes

NASA Astrophysics Data System (ADS)

Malota, Mphatso; Mchenga, Joshua

2018-03-01

Occurrence of soil salinization in irrigation schemes can be a good indicator to introduce high salt tolerant crops in irrigation schemes. This study assessed the level of soil salinization in a communally managed 233 ha Nkhate irrigation scheme in the Lower Shire Valley region of Malawi. Soil samples were collected within the 0-0.4 m soil depth from eight randomly selected irrigation blocks. Irrigation water samples were also collected from five randomly selected locations along the Nkhate River which supplies irrigation water to the scheme. Salinity of both the soil and the irrigation water samples was determined using an electrical conductivity (EC) meter. Analysis of the results indicated that even for very low salinity tolerant crops (ECi < 2 dS/m), the irrigation water was suitable for irrigation purposes. However, root-zone soil salinity profiles depicted that leaching of salts was not adequate and that the leaching requirement for the scheme needs to be relooked and always be adhered to during irrigation operation. The study concluded that the crop system at the scheme needs to be adjusted to match with prevailing soil and irrigation water salinity levels.

Developing a vitamin greenhouse for the life support system of the international space station and for future interplanetary missions

NASA Astrophysics Data System (ADS)

Berkovich, Y. A.; Krivobok, N. M.; Sinyak, Yu. Ye.; Smolyanina, S. O.; Grigoriev, Yu. I.; Romanov, S. Yu.; Guissenberg, A. S.

2004-01-01

In order to evaluate the effects of gravity on growing plants, we conducted ground based long-term experiments with dwarf wheat, cultivar Apogee and Chinese cabbage, cultivar Khibinskaya. The test crops had been grown in overhead position with HPS lamp below root module so gravity and light intensity gradients had been in opposite direction. Plants of the control crop grew in normal position under the same lamp. Both crops were grown on porous metallic membranes with stable -1 kPa matric potential on their surface. Results from these and other studies allowed us to examine the differences in growth and development of the plants as well as the root systems in relation to the value of the gravity force influence. Dry weight of the roots from test group was decreased in 2.5 times for wheat and in 6 times - at the Chinese cabbage, but shoot dry biomass was practically same for both test and control versions. A harvest index of the test plants increased substantially. The data shows, that development of the plants was essentially changed in microgravity. The experiments in the space greenhouse Svet aboard the Mir space station proved that it is possible to compensate the effects of weightlessness on higher plants by manipulating gradients of environmental parameters (i.e. photon flux, matric potential in the root zone, etc.). However, the average productivity of Svet concerning salad crops even in ground studies did not provide more than 14 g fresh biomass per day. This does not provide a sufficient level of supplemental nutrients to the crew of the ISS. A cylindrical design of a space plant growth chamber (SPGC) allows for maximal productivity in presence of very tight energy and volume limitations onboard the ISS and provides a number of operational advantages. Productivity from this type of SPGF with a 0.5 kW energy utilization when salad growing would provide approximately 100 g of edible biomass per day, which would almost satisfy requirements for a crew of two in vitamin C and carotene and partly vitamin B group as well as rough fiber.

Developing a Vitamin Greenhouse for the Life Support System of the International Space Station and for Future Interplanetary Missions

NASA Astrophysics Data System (ADS)

Berkovich, Y.; Krivobok, N.; Sinyak, Y.; Smolyanina, S.; Grigoriev, Y.; Romanov, S.; Guissenberg, A.

In order to evaluate the effects of gravity on growing plants, we conducted ground based long-term experiments with dwarf wheat, cultivar Apogee and Chinese cabbage, cultivar Khibinskaja. The test crops had been grown in overhead position with HPS lamp below root module, so gravity and light intensity gradients were in opposite direction. Plants of the control crop grew in normal position under the same lamp. Both crops were grown on porous metallic membranes with stable -1 kPa water potential on their surface. Results from these and other studies allowed us to examine the differences in growth and development of the plants as well as the root systems in relation to the value of the gravity force influence. Dry weight of the roots from test group was decreased in 2,5 tim es for wheat and in 6 times - at the Chinese cabbage, but shoot dry biomass was practically same for both test and control versions. A harvest index of the test plants increased substantially. The data shows that development of the plants was essentially changed in microgravity. The experiments in the space greenhouse Svet aboard the Mir space station proved that it is possible to compensate the effects of weightlessness on higher plants by manipulating gradients of environmental parameters (i.e. photon flux, water potential in the root zone, etc.). However, the average productivity of Svet concerning salad crops even in ground studies did not provide more than 14 gms fresh biomass per day. This does not provide a sufficient level of supplemental nutrients to the crew of the ISS. A cylindrical design of a space plant growth facility (SPGF) allows for maximal productivity in presence of very tight energy and volume limitations onboard the ISS and provides a number of operational advantages. Productivity from this type of SPGF with a 0.5 kW energy utilization, when growing Chinese cabbage would provide approximately 100 gms of edible biomass per day, which would satisfy requirements for a crew of two including vitamin C, carotene and vitamin B group as well as rough fiber

[Dynamics and combined injuries of main pest species in rice cropping zones of Yunnan, Southwest China].

PubMed

Dong, Kun; Dong, Yan; Wang, Hai-Long; Zhang, Li-Min; Zan, Qing-An; Chen, Bin; Li, Zheng-Yue

2014-01-01

A series of rice pest injuries (due to pathogens, insects, and weeds) were surveyed in 286 farmers' fields for major rice varieties of three rice cropping zones of Yunnan Province, Southwest China. The composition and dynamics of main pest species were analyzed, and the trend of rice pest succession in Yunnan was discussed based upon landmark publications. The results showed that the three rice cropping zones had different pest characteristics as regard to main species, dynamics and combined injuries. Sheath rot, bacterial leaf blight, rice stripe, leaf hoppers, armyworms and stem borers were serious in the japonica rice zone. Sheath blight and rice stripe were serious in the japonica-indica interlacing zone. Leaf blast, sheath blight, leaf folders and weeds above rice crop canopy were serious in the indica rice zone. False smut, plant hoppers and weeds below rice crop canopy were ubiquitous and serious in the three kinds of rice cropping zones. Many kinds of weed infestation emerged in the whole rice cropping seasons. Echinochloa crusgalli, Sagittaria pygmaea, Potamogeton distinctus and Spirodela polyrhiza were the main species of weeds in the rice cropping zones of Yunnan. Overall, levels of combined injuries due to pests in the japonica rice zone and the indica rice zone were higher than that in the japonica-indica interlacing zone. In terms of the trend of rice pest succession in Yunnan, injuries due to false smut, sheath blight and plant hoppers seemed to be in a worse tendency in all rice cropping zones of Yunnan, while dominants species of weeds in the paddy fields are shifting from the annual weeds to the perennial malignant weeds.

Ecophysiological response of Crambe maritima to airborne and soil-borne salinity

PubMed Central

de Vos, Arjen C.; Broekman, Rob; Groot, Maartje P.; Rozema, Jelte

2010-01-01

Background and Aims There is a need to evaluate the salt tolerance of plant species that can be cultivated as crops under saline conditions. Crambe maritima is a coastal plant, usually occurring on the driftline, with potential use as a vegetable crop. The aim of this experiment was to determine the growth response of Crambe maritima to various levels of airborne and soil-borne salinity and the ecophysiological mechanisms underlying these responses. Methods In the greenhouse, plants were exposed to salt spray (400 mm NaCl) as well as to various levels of root-zone salinity (RZS) of 0, 50, 100, 200 and 300 mm NaCl during 40 d. The salt tolerance of Crambe maritima was assessed by the relative growth rate (RGR) and its components. To study possible salinity effects on the tissue and cellular level, the leaf succulence, tissue Na+ concentrations, Na+ : K+ ratio, net K+/Na+ selectivity, N, P, K+, Ca2+, Mg2+, proline, soluble sugar concentrations, osmotic potential, total phenolics and antioxidant capacity were measured. Key Results Salt spray did not affect the RGR of Crambe maritima. However, leaf thickness and leaf succulence increased with salt spray. Root zone salinities up to 100 mm NaCl did not affect growth. However, at 200 mm NaCl RZS the RGR was reduced by 41 % compared with the control and by 56 % at 300 mm NaCl RZS. The reduced RGR with increasing RZS was largely due to the reduced specific leaf area, which was caused by increased leaf succulence as well as by increased leaf dry matter content. No changes in unit leaf rate were observed but increased RZS resulted in increased Na+ and proline concentrations, reduced K+, Ca2+ and Mg2+ concentrations, lower osmotic potential and increased antioxidant capacity. Proline concentrations of the leaves correlated strongly (r = 0·95) with RZS concentrations and not with plant growth. Conclusions Based on its growth response, Crambe maritima can be classified as a salt spray tolerant plant that is sensitive to root zone salinities exceeding 100 mm NaCl. PMID:20354071

Simulation of crop yield variability by improved root-soil-interaction modelling

NASA Astrophysics Data System (ADS)

Duan, X.; Gayler, S.; Priesack, E.

2009-04-01

Understanding the processes and factors that govern the within-field variability in crop yield has attached great importance due to applications in precision agriculture. Crop response to environment at field scale is a complex dynamic process involving the interactions of soil characteristics, weather conditions and crop management. The numerous static factors combined with temporal variations make it very difficult to identify and manage the variability pattern. Therefore, crop simulation models are considered to be useful tools in analyzing separately the effects of change in soil or weather conditions on the spatial variability, in order to identify the cause of yield variability and to quantify the spatial and temporal variation. However, tests showed that usual crop models such as CERES-Wheat and CERES-Maize were not able to quantify the observed within-field yield variability, while their performance on crop growth simulation under more homogeneous and mainly non-limiting conditions was sufficent to simulate average yields at the field-scale. On a study site in South Germany, within-field variability in crop growth has been documented since years. After detailed analysis and classification of the soil patterns, two site specific factors, the plant-available-water and the O2 deficiency, were considered as the main causes of the crop growth variability in this field. Based on our measurement of root distribution in the soil profile, we hypothesize that in our case the insufficiency of the applied crop models to simulate the yield variability can be due to the oversimplification of the involved root models which fail to be sensitive to different soil conditions. In this study, the root growth model described by Jones et al. (1991) was adapted by using data of root distributions in the field and linking the adapted root model to the CERES crop model. The ability of the new root model to increase the sensitivity of the CERES crop models to different enviromental conditions was then evaluated by means of comparison of the simualtion results with measured data and by scenario calculations.

Root Traits and Phenotyping Strategies for Plant Improvement

PubMed Central

Paez-Garcia, Ana; Motes, Christy M.; Scheible, Wolf-Rüdiger; Chen, Rujin; Blancaflor, Elison B.; Monteros, Maria J.

2015-01-01

Roots are crucial for nutrient and water acquisition and can be targeted to enhance plant productivity under a broad range of growing conditions. A current challenge for plant breeding is the limited ability to phenotype and select for desirable root characteristics due to their underground location. Plant breeding efforts aimed at modifying root traits can result in novel, more stress-tolerant crops and increased yield by enhancing the capacity of the plant for soil exploration and, thus, water and nutrient acquisition. Available approaches for root phenotyping in laboratory, greenhouse and field encompass simple agar plates to labor-intensive root digging (i.e., shovelomics) and soil boring methods, the construction of underground root observation stations and sophisticated computer-assisted root imaging. Here, we summarize root architectural traits relevant to crop productivity, survey root phenotyping strategies and describe their advantages, limitations and practical value for crop and forage breeding programs. PMID:27135332

Root Traits and Phenotyping Strategies for Plant Improvement.

PubMed

Paez-Garcia, Ana; Motes, Christy M; Scheible, Wolf-Rüdiger; Chen, Rujin; Blancaflor, Elison B; Monteros, Maria J

2015-06-15

Roots are crucial for nutrient and water acquisition and can be targeted to enhance plant productivity under a broad range of growing conditions. A current challenge for plant breeding is the limited ability to phenotype and select for desirable root characteristics due to their underground location. Plant breeding efforts aimed at modifying root traits can result in novel, more stress-tolerant crops and increased yield by enhancing the capacity of the plant for soil exploration and, thus, water and nutrient acquisition. Available approaches for root phenotyping in laboratory, greenhouse and field encompass simple agar plates to labor-intensive root digging (i.e., shovelomics) and soil boring methods, the construction of underground root observation stations and sophisticated computer-assisted root imaging. Here, we summarize root architectural traits relevant to crop productivity, survey root phenotyping strategies and describe their advantages, limitations and practical value for crop and forage breeding programs.

Nitrogen fluxes at the root-soil interface show a mismatch of nitrogen fertilizer supply and sugarcane root uptake capacity

PubMed Central

Brackin, Richard; Näsholm, Torgny; Robinson, Nicole; Guillou, Stéphane; Vinall, Kerry; Lakshmanan, Prakash; Schmidt, Susanne; Inselsbacher, Erich

2015-01-01

Globally only ≈50% of applied nitrogen (N) fertilizer is captured by crops, and the remainder can cause pollution via runoff and gaseous emissions. Synchronizing soil N supply and crop demand will address this problem, however current soil analysis methods provide little insight into delivery and acquisition of N forms by roots. We used microdialysis, a novel technique for in situ quantification of soil nutrient fluxes, to measure N fluxes in sugarcane cropping soils receiving different fertilizer regimes, and compare these with N uptake capacities of sugarcane roots. We show that in fertilized sugarcane soils, fluxes of inorganic N exceed the uptake capacities of sugarcane roots by several orders of magnitude. Contrary, fluxes of organic N closely matched roots’ uptake capacity. These results indicate root uptake capacity constrains plant acquisition of inorganic N. This mismatch between soil N supply and root N uptake capacity is a likely key driver for low N efficiency in the studied crop system. Our results also suggest that (i) the relative contribution of inorganic N for plant nutrition may be overestimated when relying on soil extracts as indicators for root-available N, and (ii) organic N may contribute more to crop N supply than is currently assumed. PMID:26496834

Root-zone temperatures affect phenology of bud break, flower cluster development, shoot extension growth and gas exchange of 'Braeburn' (Malus domestica) apple trees.

PubMed

Greer, Dennis H; Wünsche, Jens N; Norling, Cara L; Wiggins, Harry N

2006-01-01

We investigated the effects of root-zone temperature on bud break, flowering, shoot growth and gas exchange of potted mature apple (Malus domestica (Borkh.)) trees with undisturbed roots. Soil respiration was also determined. Potted 'Braeburn' apple trees on M.9 rootstock were grown for 70 days in a constant day/night temperature regime (25/18 degrees C) and one of three constant root-zone temperatures (7, 15 and 25 degrees C). Both the proportion and timing of bud break were significantly enhanced as root-zone temperature increased. Rate of floral cluster opening was also markedly increased with increasing root-zone temperature. Shoot length increased but shoot girth growth declined as root-zone temperatures increased. Soil respiration and leaf photosynthesis generally increased as root-zone temperatures increased. Results indicate that apple trees growing in regions where root zone temperatures are < or = 15 degrees C have delayed bud break and up to 20% fewer clusters than apple trees exposed to root zone temperatures of > or = 15 degrees C. The effect of root-zone temperature on shoot performance may be mediated through the mobilization of root reserves, although the role of phytohormones cannot be discounted. Variation in leaf photosynthesis across the temperature treatments was inadequately explained by stomatal conductance. Given that root growth increases with increasing temperature, changes in sink activity induced by the root-zone temperature treatments provide a possible explanation for the non-stomatal effect on photosynthesis. Irrespective of underlying mechanisms, root-zone temperatures influence bud break and flowering in apple trees.

Root System Architecture and Abiotic Stress Tolerance: Current Knowledge in Root and Tuber Crops

PubMed Central

Khan, M. A.; Gemenet, Dorcus C.; Villordon, Arthur

2016-01-01

The challenge to produce more food for a rising global population on diminishing agricultural land is complicated by the effects of climate change on agricultural productivity. Although great progress has been made in crop improvement, so far most efforts have targeted above-ground traits. Roots are essential for plant adaptation and productivity, but are less studied due to the difficulty of observing them during the plant life cycle. Root system architecture (RSA), made up of structural features like root length, spread, number, and length of lateral roots, among others, exhibits great plasticity in response to environmental changes, and could be critical to developing crops with more efficient roots. Much of the research on root traits has thus far focused on the most common cereal crops and model plants. As cereal yields have reached their yield potential in some regions, understanding their root system may help overcome these plateaus. However, root and tuber crops (RTCs) such as potato, sweetpotato, cassava, and yam may hold more potential for providing food security in the future, and knowledge of their root system additionally focuses directly on the edible portion. Root-trait modeling for multiple stress scenarios, together with high-throughput phenotyping and genotyping techniques, robust databases, and data analytical pipelines, may provide a valuable base for a truly inclusive ‘green revolution.’ In the current review, we discuss RSA with special reference to RTCs, and how knowledge on genetics of RSA can be manipulated to improve their tolerance to abiotic stresses. PMID:27847508

Maize and soybean root front velocity and maximum depth in the Iowa, USA

USDA-ARS?s Scientific Manuscript database

Quantitative measurements of root traits can improve our understanding of how crops respond to soil-weather conditions. However, such data are rare. Our objective was to quantify maximum root depth and root front velocity (RFV) for corn and soybean crops across a range of growing conditions in the M...

Irrigation management strategies to improve Water Use Efficiency of potatoes crop in Central Tunisia

NASA Astrophysics Data System (ADS)

Ghazouani, Hiba; Provenzano, Giuseppe; Rallo, Giovanni; Mguidiche, Amel; Douh, Boutheina; Boujelben, Abdelhamid

2015-04-01

In Tunisia, the expansion of irrigated area and the semiarid climate make it compulsory to adopt strategies of water management to increase water use efficiency. Subsurface drip irrigation (SDI), providing the application of high frequency small irrigation volumes below the soil surface have been increasingly used to enhance irrigation efficiency. At the same time, deficit irrigation (DI) has shown successful results with a large number of crop in various countries. However, for some crops like potatoes, DI is difficult to manage due to the rapid effect of water stress on tuber yield. Irrigation frequency is a key factor to schedule subsurface drip irrigation because, even maintaining the total seasonal volume, soil wetting patterns can result different during the growth period, with consequence on crop yield. Despite the need to enhance water use efficiency, only a few studies related to deficit irrigation of horticultural crops have been made in Tunisia. Objective of the paper was to assess the effects of different on-farm irrigation strategies on water use efficiency of potatoes crop irrigated with subsurface drip irrigation in a semiarid area of central Tunisia. After validation, Hydrus-2D model was used to simulate soil water status in the root zone, to evaluate actual crop evapotranspiration and then to estimate indirectly water use efficiency (IWUE), defined as the ratio between crop yield and total amount of water supplied with irrigation. Field experiments, were carried out in Central Tunisia (10° 33' 47.0" E, 35° 58' 8.1° N, 19 m a.s.l) on a potatoes crop planted in a sandy loam soil, during the growing season 2014, from January 15 (plantation of tubers) to May 6 (harvesting). Soil water status was monitored in two plots (T1 and T2) maintained under the same management, but different irrigation volumes, provided by a SDI system. In particular, irrigation was scheduled according to the average water content measured in the root zone, with a total of 8 watering, with timing ranging between one and three hours in T1, and between about half-an-hour and one-hour and a-half, in T2. The validity of Hydrus-2D model was initially assessed based on the comparison between measured and estimated soil water content at different distances from the emitter (RMSE values were not higher than 0.036). Then, model simulations allowed to verify that it is possible to enhance irrigation water use efficiency by increasing the frequency of irrigation even maintaining limited water deficit conditions during the full development stage subsequent the crop tuberization. Experimental results, joined to model simulations can therefore provide useful guidelines for a more sustainable use of irrigation water in countries characterised by semi-arid environments and limited availability of water resources.

A spatial ecology study on the effects of field conditions and crop rotation on the incidence of Plectris aliena (Coleoptera: Scarabaeidae) grub damage to sweetpotato roots.

PubMed

Brill, Nancy L; Osborne, Jason; Abney, Mark R

2013-10-01

A farmscape study was conducted in commercial sweetpotato (Ipomoea batatas (L.) Lam) fields in Columbus County, NC, in 2010 and 2011 to investigate the effects of the following field conditions: soil drainage class, soil texture, field size, border habitat, land elevation, and the previous year's crop rotation on the incidence of damage caused by Plectris aliena Chapman (Coleoptera:Scarabaeidae) larval feeding. Soil drainage and crop rotation significantly affected the incidence of damage to roots, with well drained soils having a low estimated incidence of damaged roots (0.004) compared with all other drainage classes (0.009-0.011 incidence of damaged roots). Fields with soybeans [Glycine max (L.) Merr] planted the preceding year had the highest incidence of root damage (0.15) compared with all other crops. The effects of border habitats, which were adjacent to grower fields where roots were sampled, showed that as the location of the roots was closer to borders of soybean (planted the year before) or grass fields, the chance of damage to roots decreased. Results indicate that growers can use crop rotation as a management technique and avoid planting sweetpotatoes the year after soybeans to reduce the incidence of P. aliena larval feeding on sweetpotato roots. Environmental conditions such as fields with poor drainage and certain border habitats may be avoided, or selected, by growers to reduce risk of damage to roots by P. aliena.

Feedbacks between soil penetration resistance, root architecture and water uptake limit water accessibility and crop growth - A vicious circle.

PubMed

Colombi, Tino; Torres, Lorena Chagas; Walter, Achim; Keller, Thomas

2018-06-01

Water is the most limiting resource for global crop production. The projected increase of dry spells due to climate change will further increase the problem of water limited crop yields. Besides low water abundance and availability, water limitations also occur due to restricted water accessibility. Soil penetration resistance, which is largely influenced by soil moisture, is the major soil property regulating root elongation and water accessibility. Until now the interactions between soil penetration resistance, root system properties, water uptake and crop productivity are rarely investigated. In the current study we quantified how interactive effects between soil penetration resistance, root architecture and water uptake affect water accessibility and crop productivity in the field. Maize was grown on compacted and uncompacted soil that was either tilled or remained untilled after compaction, which resulted in four treatments with different topsoil penetration resistance. Higher topsoil penetration resistance caused root systems to be shallower. This resulted in increased water uptake from the topsoil and hence topsoil drying, which further increased the penetration resistance in the uppermost soil layer. As a consequence of this feedback, root growth into deeper soil layers, where water would have been available, was reduced and plant growth decreased. Our results demonstrate that soil penetration resistance, root architecture and water uptake are closely interrelated and thereby determine the potential of plants to access soil water pools. Hence, these interactions and their feedbacks on water accessibility and crop productivity have to be accounted for when developing strategies to alleviate water limitations in cropping systems. Copyright © 2018 Elsevier B.V. All rights reserved.

Evaluation of Performance of Introduced Yam Bean (Pachyrhizus spp.) in Three Agro-Ecological Zones of Rwanda.

PubMed

Jean, Ndirigwe; Patrick, Rubaihayo; Phenihas, Tukamuhabwa; Rolland, Agaba; Placide, Rukundo; Robert, Mwanga O M; Silver, Tumwegamire; Vestine, Kamarirwa; Evrard, Kayinamura; Grüneberg, Wolfgang J

2017-01-01

The yam bean ( Pachyrizhus spp ) was recently introduced as a root crop with high-yield potential, considerable protein and micro-nutrient concentration to investigate its potential for food production in Rwanda. Except for Chuin types ( Pachyrizhus tuberosus ) which have high storage root dry matter (RDM) (26 to 36%), most accessions are consumed raw and are reported to have low RDM. The present study aimed to evaluate and identify adapted high yielding yam bean accessions in major agro-ecological zones of Rwanda. Field experiments with 22 accessions were conducted in 2012 at three research sites representing the major agro-ecologies of Rwanda. Strict reproductive pruning was followed to enhance fresh storage root yields. Across locations, ANOVA indicated highly significant differences ( p  < 0.01) for genotypes (G), locations (L), seasons (S) and G x L effects for storage root yield, vine yield and harvest index and accounted for 21.88%, 43.41%, 1.43% and 13.25% of the treatment sum of squares, respectively. The GGE bi-plot revealed that EC209018 is high yielding but unstable. However, genotypes, AC209034, AC209035 and EC209046, were outstanding in terms of adaptation and relative stability across the 3 locations, suggesting consistent root yields irrespective of location and environmental conditions. The GGE scatter plot showed that all genotypes formed one mega-environment for storage root yield (Karama, Musanze and Rubona) and two mega-environments for biomass yield (Karama and Rubona as one mega-environment and Musanze the second one). This study revealed that Karama is the most suitable environment for evaluation and selection of yam bean for yield components in Rwanda.

Hydrogen Peroxide-Induced Root Ca2+ and K+ Fluxes Correlate with Salt Tolerance in Cereals: Towards the Cell-Based Phenotyping

PubMed Central

Zhou, Meixue; Shabala, Sergey

2018-01-01

Salinity stress-induced production of reactive oxygen species (ROS) and associated oxidative damage is one of the major factors limiting crop production in saline soils. However, the causal link between ROS production and stress tolerance is not as straightforward as one may expect, as ROS may also play an important signaling role in plant adaptive responses. In this study, the causal relationship between salinity and oxidative stress tolerance in two cereal crops—barley (Hordeum vulgare) and wheat (Triticum aestivum)—was investigated by measuring the magnitude of ROS-induced net K+ and Ca2+ fluxes from various root tissues and correlating them with overall whole-plant responses to salinity. We have found that the association between flux responses to oxidative stress and salinity stress tolerance was highly tissue specific, and was also dependent on the type of ROS applied. No correlation was found between root responses to hydroxyl radicals and the salinity tolerance. However, when oxidative stress was administered via H2O2 treatment, a significant positive correlation was found for the magnitude of ROS-induced K+ efflux and Ca2+ uptake in barley and the overall salinity stress tolerance, but only for mature zone and not the root apex. The same trends were found for wheat. These results indicate high tissue specificity of root ion fluxes response to ROS and suggest that measuring the magnitude of H2O2-induced net K+ and Ca2+ fluxes from mature root zone may be used as a tool for cell-based phenotyping in breeding programs aimed to improve salinity stress tolerance in cereals. PMID:29494514

Root morphology and seed and leaf ionomic traits in a Brassica napus L. diversity panel show wide phenotypic variation and are characteristic of crop habit.

PubMed

Thomas, C L; Alcock, T D; Graham, N S; Hayden, R; Matterson, S; Wilson, L; Young, S D; Dupuy, L X; White, P J; Hammond, J P; Danku, J M C; Salt, D E; Sweeney, A; Bancroft, I; Broadley, M R

2016-10-04

Mineral nutrient uptake and utilisation by plants are controlled by many traits relating to root morphology, ion transport, sequestration and translocation. The aims of this study were to determine the phenotypic diversity in root morphology and leaf and seed mineral composition of a polyploid crop species, Brassica napus L., and how these traits relate to crop habit. Traits were quantified in a diversity panel of up to 387 genotypes: 163 winter, 127 spring, and seven semiwinter oilseed rape (OSR) habits, 35 swede, 15 winter fodder, and 40 exotic/unspecified habits. Root traits of 14 d old seedlings were measured in a 'pouch and wick' system (n = ~24 replicates per genotype). The mineral composition of 3-6 rosette-stage leaves, and mature seeds, was determined on compost-grown plants from a designed experiment (n = 5) by inductively coupled plasma-mass spectrometry (ICP-MS). Seed size explained a large proportion of the variation in root length. Winter OSR and fodder habits had longer primary and lateral roots than spring OSR habits, with generally lower mineral concentrations. A comparison of the ratios of elements in leaf and seed parts revealed differences in translocation processes between crop habits, including those likely to be associated with crop-selection for OSR seeds with lower sulphur-containing glucosinolates. Combining root, leaf and seed traits in a discriminant analysis provided the most accurate characterisation of crop habit, illustrating the interdependence of plant tissues. High-throughput morphological and composition phenotyping reveals complex interrelationships between mineral acquisition and accumulation linked to genetic control within and between crop types (habits) in B. napus. Despite its recent genetic ancestry (<10 ky), root morphology, and leaf and seed composition traits could potentially be used in crop improvement, if suitable markers can be identified and if these correspond with suitable agronomy and quality traits.

Disentangling the root- and detritus-based food chain in the micro-food web of an arable soil by plant removal

PubMed Central

Glavatska, Olena; Müller, Karolin; Butenschoen, Olaf; Schmalwasser, Andreas; Kandeler, Ellen; Scheu, Stefan; Totsche, Kai Uwe

2017-01-01

Soil food web structure and function is primarily determined by the major basal resources, which are living plant tissue, root exudates and dead organic matter. A field experiment was performed to disentangle the interlinkage of the root-and detritus-based soil food chains. An arable site was cropped either with maize, amended with maize shoot litter or remained bare soil, representing food webs depending on roots, aboveground litter and soil organic matter as predominant resource, respectively. The soil micro-food web, i.e. microorganisms and nematodes, was investigated in two successive years along a depth transect. The community composition of nematodes was used as model to determine the changes in the rhizosphere, detritusphere and bulk soil food web. In the first growing season the impact of treatments on the soil micro-food web was minor. In the second year plant-feeding nematodes increased under maize, whereas after harvest the Channel Index assigned promotion of the detritivore food chain, reflecting decomposition of root residues. The amendment with litter did not foster microorganisms, instead biomass of Gram-positive and Gram-negative bacteria as well as that of fungi declined in the rooted zone. Likely higher grazing pressure by nematodes reduced microbial standing crop as bacterial and fungal feeders increased. However, populations at higher trophic levels were not promoted, indicating limited flux of litter resources along the food chain. After two years of bare soil microbial biomass and nematode density remained stable, pointing to soil organic matter-based resources that allow bridging periods with deprivation. Nematode communities were dominated by opportunistic taxa that are competitive at moderate resource supply. In sum, removal of plants from the system had less severe effects than expected, suggesting considerable food web resilience to the disruption of both the root and detrital carbon channel, pointing to a legacy of organic matter resources in arable soils. PMID:28704438

Disentangling the root- and detritus-based food chain in the micro-food web of an arable soil by plant removal.

PubMed

Glavatska, Olena; Müller, Karolin; Butenschoen, Olaf; Schmalwasser, Andreas; Kandeler, Ellen; Scheu, Stefan; Totsche, Kai Uwe; Ruess, Liliane

2017-01-01

Soil food web structure and function is primarily determined by the major basal resources, which are living plant tissue, root exudates and dead organic matter. A field experiment was performed to disentangle the interlinkage of the root-and detritus-based soil food chains. An arable site was cropped either with maize, amended with maize shoot litter or remained bare soil, representing food webs depending on roots, aboveground litter and soil organic matter as predominant resource, respectively. The soil micro-food web, i.e. microorganisms and nematodes, was investigated in two successive years along a depth transect. The community composition of nematodes was used as model to determine the changes in the rhizosphere, detritusphere and bulk soil food web. In the first growing season the impact of treatments on the soil micro-food web was minor. In the second year plant-feeding nematodes increased under maize, whereas after harvest the Channel Index assigned promotion of the detritivore food chain, reflecting decomposition of root residues. The amendment with litter did not foster microorganisms, instead biomass of Gram-positive and Gram-negative bacteria as well as that of fungi declined in the rooted zone. Likely higher grazing pressure by nematodes reduced microbial standing crop as bacterial and fungal feeders increased. However, populations at higher trophic levels were not promoted, indicating limited flux of litter resources along the food chain. After two years of bare soil microbial biomass and nematode density remained stable, pointing to soil organic matter-based resources that allow bridging periods with deprivation. Nematode communities were dominated by opportunistic taxa that are competitive at moderate resource supply. In sum, removal of plants from the system had less severe effects than expected, suggesting considerable food web resilience to the disruption of both the root and detrital carbon channel, pointing to a legacy of organic matter resources in arable soils.

Ground penetrating radar (GPR) detects fine roots of agricultural crops in the field

Treesearch

Xiuwei Liu; Xuejun Dong; Qingwu Xue; Daniel I. Leskovar; John Jifon; John R. Butnor; Thomas Marek

2018-01-01

Aim Ground penetrating radar (GPR) as a non-invasive technique is widely used in coarse root detection. However, the applicability of the technique to detect fine roots of agricultural crops is unknown. The objective of this study was to assess the feasibility of utilizing GPR to detect fine roots in the field.

Nitrogen fluxes at the root-soil interface show a mismatch of nitrogen fertilizer supply and sugarcane root uptake capacity

NASA Astrophysics Data System (ADS)

Inselsbacher, Erich; Schmidt, Susanne; Näsholm, Torgny; Robinson, Nicole; Guillou, Stéphane; Vinall, Kerry; Lakshmanan, Prakash; Brackin, Richard

2016-04-01

Nitrogen (N) uptake by agricultural crops is a key constituent of the global N cycle, as N captured by roots has a markedly different fate than N remaining in the soil. Global evidence indicates that only approximately 50% of applied N fertilizer is captured by crops, and the remainder can cause pollution via runoff and gaseous emissions. This inefficiency is of global concern, and requires innovation based on improved understanding of which N forms are available for and ultimately taken up by crops. However, current soil analysis methods based on destructive soil sampling provide little insight into delivery and acquisition of N forms by roots. Here, we present the results of a study in sugarcane fields receiving different fertilizer regimes comparing soil N supply rates with potential root N uptake rates. We applied microdialysis, a novel technique for in situ quantification of soil nutrient fluxes, to measure flux rates of inorganic N and amino acid N, and analyzed N uptake capacities of sugarcane roots using 15N labelled tracers. We found that in fertilized sugarcane soils, fluxes of inorganic N exceed the uptake capacities of sugarcane roots by several orders of magnitude. Contrary, fluxes of organic N closely matched roots' uptake capacity. These results indicate root uptake capacity constrains plant acquisition of inorganic N. This mismatch between soil N supply and root N uptake capacity is a likely key driver for low N efficiency in the studied crop system. Our results also suggest that the relative contribution of inorganic N for plant nutrition may be overestimated when relying on soil extracts as indicators for root-available N, and organic N may contribute more to crop N supply than is currently assumed. Overall, we show a new approach for examining in situ N relations in soil in context of crop N physiology, which provides a new avenue towards tailoring N fertilizer supply to match the specific uptake abilities and N demand of crops over the growth cycle.

The Potential for Cereal Rye Cover Crops to Host Corn Seedling Pathogens.

PubMed

Bakker, Matthew G; Acharya, Jyotsna; Moorman, Thomas B; Robertson, Alison E; Kaspar, Thomas C

2016-06-01

Cover cropping is a prevalent conservation practice that offers substantial benefits to soil and water quality. However, winter cereal cover crops preceding corn may diminish beneficial rotation effects because two grass species are grown in succession. Here, we show that rye cover crops host pathogens capable of causing corn seedling disease. We isolated Fusarium graminearum, F. oxysporum, Pythium sylvaticum, and P. torulosum from roots of rye and demonstrate their pathogenicity on corn seedlings. Over 2 years, we quantified the densities of these organisms in rye roots from several field experiments and at various intervals of time after rye cover crops were terminated. Pathogen load in rye roots differed among fields and among years for particular fields. Each of the four pathogen species increased in density over time on roots of herbicide-terminated rye in at least one field site, suggesting the broad potential for rye cover crops to elevate corn seedling pathogen densities. The radicles of corn seedlings planted following a rye cover crop had higher pathogen densities compared with seedlings following a winter fallow. Management practices that limit seedling disease may be required to allow corn yields to respond positively to improvements in soil quality brought about by cover cropping.

Two applications of the Recently Developed UZF-MT3DMS Model for Evaluating Nonpoint-Source Fluxes (Invited)

NASA Astrophysics Data System (ADS)

Morway, E. D.; Niswonger, R. G.; Nishikawa, T.

2013-12-01

The solute-transport model MT3DMS was modified to simulate transport in the unsaturated-zone by incorporating the additional flow terms calculated by the Unsaturated-Zone Flow (UZF) package developed for MODFLOW. Referred to as UZF-MT3DMS, the model simulates advection and dispersion of conservative and reactive solutes in unsaturated and saturated porous media. Significant time savings are realized owing to the efficiency of the kinematic -wave approximation used by the UZF1 package relative to Richards' equation-based approaches, facilitating the use of automated parameter-estimation routines wherein thousands of model runs may be required. Currently, UZF-MT3DMS is applied to two real-world applications of existing MODFLOW and MT3DMS models retro-fitted to use the UZF1 package for simulating the unsaturated component of the sub-surface system. In the first application, two regional-scale investigations located in Colorado's Lower Arkansas River Valley (LARV) are developed to evaluate the extent and severity of unsaturated-zone salinization contributing to crop yield loss. Preliminary results indicate root zone concentrations over both regions are at or above salinity-thresholds of most crop types grown in the LARV. Regional-scale modeling investigations of salinization found in the literature commonly use lumped-parameter models rather than physically-based distributed-parameter models. In the second application, located near Joshua Tree, CA, nitrate loading to the underlying unconfined aquifer from domestic septic systems is evaluated. Due to the region's thick unsaturated-zone and correspondingly long unsaturated-zone residence times (multi-decade), UZF-MT3DMS enabled direct simulation of spatially-varying concentration break-through curves at the water table.

7 CFR 457.106 - Texas citrus tree crop insurance provisions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... proper times. Root stock—A root or a piece of a root of one tree variety onto which a bud from another... will be increased by 46 percent as a result of the additional six months of coverage for that crop year...

Deep subsurface drip irrigation using coal-bed sodic water: part I. water and solute movement

USGS Publications Warehouse

Bern, Carleton R.; Breit, George N.; Healy, Richard W.; Zupancic, John W.; Hammack, Richard

2013-01-01

Water co-produced with coal-bed methane (CBM) in the semi-arid Powder River Basin of Wyoming and Montana commonly has relatively low salinity and high sodium adsorption ratios that can degrade soil permeability where used for irrigation. Nevertheless, a desire to derive beneficial use from the water and a need to dispose of large volumes of it have motivated the design of a deep subsurface drip irrigation (SDI) system capable of utilizing that water. Drip tubing is buried 92 cm deep and irrigates at a relatively constant rate year-round, while evapotranspiration by the alfalfa and grass crops grown is seasonal. We use field data from two sites and computer simulations of unsaturated flow to understand water and solute movements in the SDI fields. Combined irrigation and precipitation exceed potential evapotranspiration by 300-480 mm annually. Initially, excess water contributes to increased storage in the unsaturated zone, and then drainage causes cyclical rises in the water table beneath the fields. Native chloride and nitrate below 200 cm depth are leached by the drainage. Some CBM water moves upward from the drip tubing, drawn by drier conditions above. Chloride from CBM water accumulates there as root uptake removes the water. Year over year accumulations indicated by computer simulations illustrate that infiltration of precipitation water from the surface only partially leaches such accumulations away. Field data show that 7% and 27% of added chloride has accumulated above the drip tubing in an alfalfa and grass field, respectively, following 6 years of irrigation. Maximum chloride concentrations in the alfalfa field are around 45 cm depth but reach the surface in parts of the grass field, illustrating differences driven by crop physiology. Deep SDI offers a means of utilizing marginal quality irrigation waters and managing the accumulation of their associated solutes in the crop rooting zone.

Developing a technique to enhance durability of fibrous ion-exchange resin substrate for space greenhouses

NASA Astrophysics Data System (ADS)

Krivobok, A. S.; Berkovich, Yu. A.; Shcherbakova, V. A.; Chuvilskaya, N. A.

2018-02-01

One way to cut consumables for space plant growth facilities (PGF) with artificial soil in the form of fibrous ion-exchange resin substrate (FIERS) is on-board regeneration of the used medium. After crop harvest the procedure includes removal of the roots from the fibrous media with preservation of the exchanger properties and capillary structure. One type of FIERS, namely BIONA-V3ۛ, has been used in Russian prototypes of space conveyors. We describe a two-stage treatment of BIONA-V3ۛ including primary microwave heating of the used FIERS until (90 ± 5) °C in alkali-peroxide solution during 3.5 hrs. The second stage of the treatment is decomposition of root vestiges inside pores of BIONA-V3ۛ by using thermophilic and mesophilic anaerobic bacteria Clostridium thermocellum, Clostridium cellulolyticum and Cellulosilyticum lentocellum during 7-10 days at 55 °C. The two-stage procedure allows extraction of 90% dead roots from the FIERS' pores and the preservation of root zone hydro-physical properties. A posterior enrichment of the FIERS by minerals makes BIONA- V3ۛ reusable.

Can phosphorus application and cover cropping alter arbuscular mycorrhizal fungal communities and soybean performance after a five-year phosphorus-unfertilized crop rotational system?

PubMed

Higo, Masao; Sato, Ryohei; Serizawa, Ayu; Takahashi, Yuichi; Gunji, Kento; Tatewaki, Yuya; Isobe, Katsunori

2018-01-01

Understanding diversity of arbuscular mycorrhizal fungi (AMF) is important for optimizing their role for phosphorus (P) nutrition of soybeans ( Glycine max (L.) Merr.) in P-limited soils. However, it is not clear how soybean growth and P nutrition is related to AMF colonization and diversity of AMF communities in a continuous P-unfertilized cover cropping system. Thus, we investigated the impact of P-application and cover cropping on the interaction among AMF colonization, AMF diversity in soybean roots, soybean growth and P nutrition under a five-year P-unfertilized crop rotation. In this study, we established three cover crop systems (wheat, red clover and oilseed rape) or bare fallow in rotation with soybean. The P-application rates before the seeding of soybeans were 52.5 and 157.5 kg ha -1 in 2014 and 2015, respectively. We measured AMF colonization in soybean roots, soybean growth parameters such as aboveground plant biomass, P uptake at the flowering stage and grain yields at the maturity stage in both years. AMF community structure in soybean roots was characterized by specific amplification of small subunit rDNA. The increase in the root colonization at the flowering stage was small as a result of P-application. Cover cropping did not affect the aboveground biomass and P uptake of soybean in both years, but the P-application had positive effects on the soybean performance such as plant P uptake, biomass and grain yield in 2015. AMF communities colonizing soybean roots were also significantly influenced by P-application throughout the two years. Moreover, the diversity of AMF communities in roots was significantly influenced by P-application and cover cropping in both years, and was positively correlated with the soybean biomass, P uptake and grain yield throughout the two years. Our results indicated that P-application rather than cover cropping may be a key factor for improving soybean growth performance with respect to AMF diversity in P-limited cover cropping systems. Additionally, AMF diversity in roots can potentially contribute to soybean P nutrition even in the P-fertilized cover crop rotational system. Therefore, further investigation into the interaction of AMF diversity, P-application and cover cropping is required for the development of more effective P management practices on soybean growth performance.

Can phosphorus application and cover cropping alter arbuscular mycorrhizal fungal communities and soybean performance after a five-year phosphorus-unfertilized crop rotational system?

PubMed Central

Sato, Ryohei; Serizawa, Ayu; Takahashi, Yuichi; Gunji, Kento; Tatewaki, Yuya; Isobe, Katsunori

2018-01-01

Background Understanding diversity of arbuscular mycorrhizal fungi (AMF) is important for optimizing their role for phosphorus (P) nutrition of soybeans (Glycine max (L.) Merr.) in P-limited soils. However, it is not clear how soybean growth and P nutrition is related to AMF colonization and diversity of AMF communities in a continuous P-unfertilized cover cropping system. Thus, we investigated the impact of P-application and cover cropping on the interaction among AMF colonization, AMF diversity in soybean roots, soybean growth and P nutrition under a five-year P-unfertilized crop rotation. Methods In this study, we established three cover crop systems (wheat, red clover and oilseed rape) or bare fallow in rotation with soybean. The P-application rates before the seeding of soybeans were 52.5 and 157.5 kg ha−1 in 2014 and 2015, respectively. We measured AMF colonization in soybean roots, soybean growth parameters such as aboveground plant biomass, P uptake at the flowering stage and grain yields at the maturity stage in both years. AMF community structure in soybean roots was characterized by specific amplification of small subunit rDNA. Results The increase in the root colonization at the flowering stage was small as a result of P-application. Cover cropping did not affect the aboveground biomass and P uptake of soybean in both years, but the P-application had positive effects on the soybean performance such as plant P uptake, biomass and grain yield in 2015. AMF communities colonizing soybean roots were also significantly influenced by P-application throughout the two years. Moreover, the diversity of AMF communities in roots was significantly influenced by P-application and cover cropping in both years, and was positively correlated with the soybean biomass, P uptake and grain yield throughout the two years. Discussion Our results indicated that P-application rather than cover cropping may be a key factor for improving soybean growth performance with respect to AMF diversity in P-limited cover cropping systems. Additionally, AMF diversity in roots can potentially contribute to soybean P nutrition even in the P-fertilized cover crop rotational system. Therefore, further investigation into the interaction of AMF diversity, P-application and cover cropping is required for the development of more effective P management practices on soybean growth performance. PMID:29682413

Microgravity Effects on Water Supply and Substrate Properties in Porous Matrix Root Support Systems

NASA Astrophysics Data System (ADS)

Bingham, G. E.; Jones, S. B.; Or, D.; Podolski, I. G.; Levinskikh, M. A.; Sytchov, V. N.; Ivanova, T.; Kostov, P.; Sapunova, S.; Dandolov, I.; Bubenheim, D. B.; Jahns, G.

2000-12-01

The control of water content and water movement in granular substrate-based plant root systems in microgravity is a complex problem. Improper water and oxygen delivery to plant roots has delayed studies of the effects of microgravity on plant development and the use of plants in physical and mental life support systems. Our international effort (USA, Russia and Bulgaria) has upgraded the plant growth facilities on the Mir Orbital Station (OS) and used them to study the full life cycle of plants. The Bulgarian-Russian-developed Svet Space Greenhouse (SG) system was upgraded on the Mir OS in 1996. The US developed Gas Exchange Measurement System (GEMS) greatly extends the range of environmental parameters monitored. The Svet-GEMS complex was used to grow a fully developed wheat crop during 1996. The growth rate and development of these plants compared well with earth grown plants indicating that the root zone water and oxygen stresses that have limited plant development in previous long-duration experiments have been overcome. However, management of the root environment during this experiment involved several significant changes in control settings as the relationship between the water delivery system, water status sensors, and the substrate changed during the growth cycles.

Identifying Developmental Zones in Maize Lateral Root Cell Length Profiles using Multiple Change-Point Models

PubMed Central

Moreno-Ortega, Beatriz; Fort, Guillaume; Muller, Bertrand; Guédon, Yann

2017-01-01

The identification of the limits between the cell division, elongation and mature zones in the root apex is still a matter of controversy when methods based on cellular features, molecular markers or kinematics are compared while methods based on cell length profiles have been comparatively underexplored. Segmentation models were developed to identify developmental zones within a root apex on the basis of epidermal cell length profiles. Heteroscedastic piecewise linear models were estimated for maize lateral roots of various lengths of both wild type and two mutants affected in auxin signaling (rtcs and rum-1). The outputs of these individual root analyses combined with morphological features (first root hair position and root diameter) were then globally analyzed using principal component analysis. Three zones corresponding to the division zone, the elongation zone and the mature zone were identified in most lateral roots while division zone and sometimes elongation zone were missing in arrested roots. Our results are consistent with an auxin-dependent coordination between cell flux, cell elongation and cell differentiation. The proposed segmentation models could extend our knowledge of developmental regulations in longitudinally organized plant organs such as roots, monocot leaves or internodes. PMID:29123533

A combined monitoring and modeling approach to quantify water and nitrate leaching using effective soil column hydraulic properties

NASA Astrophysics Data System (ADS)

Couvreur, V.; Kandelous, M. M.; Moradi, A. B.; Baram, S.; Mairesse, H.; Hopmans, J. W.

2014-12-01

There is a worldwide growing concern for agricultural lands input to groundwater pollution. Nitrate contamination of groundwater across the Central Valley of California has been related to its diverse and intensive agricultural practices. However, there has been no study comparing leaching of nitrate in each individual agricultural land within the complex and diversely managed studied area. A combined field monitoring and modeling approach was developed to quantify from simple measurements the leaching of water and nitrate below the root zone. The monitored state variables are soil water content at several depths within the root zone, soil matric potential at two depths below the root zone, and nitrate concentration in the soil solution. In the modeling part, unsaturated water flow and solute transport are simulated with the software HYDRUS in a soil profile fragmented in up to two soil hydraulic types, whose effective hydraulic properties are optimized with an inverse modeling method. The applicability of the method will first be demonstrated "in-silico", with synthetic soil water dynamics data generated with HYDRUS, and considering the soil column as the layering of several soil types characterized in-situ. The method will then be applied to actual soil water status data from various crops in California including tomato, citrus, almond, pistachio, and walnut. Eventually, improvements of irrigation and fertilization management practices (i.e. mainly questions of quantity and frequency of application minimizing leaching under constraint of water and nutrient availability) will be investigated using coupled modeling and optimization tools.

Evaluating the Utility of Remotely-Sensed Soil Moisture Retrievals for Operational Agricultural Drought Monitoring

NASA Technical Reports Server (NTRS)

Bolten, John D.; Crow, Wade T.; Zhan, Xiwu; Jackson, Thomas J.; Reynolds,Curt

2010-01-01

Soil moisture is a fundamental data source used by the United States Department of Agriculture (USDA) International Production Assessment Division (IPAD) to monitor crop growth stage and condition and subsequently, globally forecast agricultural yields. Currently, the USDA IPAD estimates surface and root-zone soil moisture using a two-layer modified Palmer soil moisture model forced by global precipitation and temperature measurements. However, this approach suffers from well-known errors arising from uncertainty in model forcing data and highly simplified model physics. Here we attempt to correct for these errors by designing and applying an Ensemble Kalman filter (EnKF) data assimilation system to integrate surface soil moisture retrievals from the NASA Advanced Microwave Scanning Radiometer (AMSR-E) into the USDA modified Palmer soil moisture model. An assessment of soil moisture analysis products produced from this assimilation has been completed for a five-year (2002 to 2007) period over the North American continent between 23degN - 50degN and 128degW - 65degW. In particular, a data denial experimental approach is utilized to isolate the added utility of integrating remotely-sensed soil moisture by comparing EnKF soil moisture results obtained using (relatively) low-quality precipitation products obtained from real-time satellite imagery to baseline Palmer model runs forced with higher quality rainfall. An analysis of root-zone anomalies for each model simulation suggests that the assimilation of AMSR-E surface soil moisture retrievals can add significant value to USDA root-zone predictions derived from real-time satellite precipitation products.

Comparison of Glucosinolate Profiles in Different Tissues of Nine Brassica Crops.

PubMed

Bhandari, Shiva Ram; Jo, Jung Su; Lee, Jun Gu

2015-08-31

Glucosinolate (GSL) profiles and concentrations in various tissues (seeds, sprouts, mature root, and shoot) were determined and compared across nine Brassica species, including cauliflower, cabbage, broccoli, radish, baemuchae, pakchoi, Chinese cabbage, leaf mustard, and kale. The compositions and concentrations of individual GSLs varied among crops, tissues, and growth stages. Seeds had highest total GSL concentrations in most of crops, whereas shoots had the lowest GSL concentrations. Aliphatic GSL concentrations were the highest in seeds, followed by that in sprouts, shoots, and roots. Indole GSL concentration was the highest in the root or shoot tissues in most of the crops. In contrast, aromatic GSL concentrations were highest in roots. Of the nine crops examined, broccoli exhibited the highest total GSL concentration in seeds (110.76 µmol·g(-1)) and sprouts (162.19 µmol·g(-1)), whereas leaf mustard exhibited the highest total GSL concentration in shoots (61.76 µmol·g(-1)) and roots (73.61 µmol·g(-1)). The lowest GSL concentrations were observed in radish across all tissues examined.

Caesium-137 soil-to-plant transfer for representative agricultural crops of monocotyledonous and dicotyledonous plants in post-Chernobyl steppe landscape

NASA Astrophysics Data System (ADS)

Paramonova, Tatiana; Komissarova, Olga; Turykin, Leonid; Kuzmenkova, Natalia; Belyaev, Vladimir

2016-04-01

The accident at the Chernobyl nuclear power plant in 1986 had a large-scale action on more than 2.3 million hectares agricultural lands in Russia. The area of radioactively contaminated chernozems of semi-arid steppe zone with initial levels of Cs-137 185-555 kBq/m2 in Tula region received the name "Plavsky radioactive hotspot". Nowadays, after the first half-life period of Cs-137 arable chernozems of the region are still polluted with 3-6-fold excess above the radioactive safety standard (126-228 kBq/m2). Therefore, qualitative and quantitative characteristics of Cs-137 soil-to-plant transfer are currently a central problem for land use on the territory. The purpose of the present study was revealing the biological features of Cs-137 root uptake from contaminated arable chernozems by different agricultural crops. The components of a grass mixture growing at the central part of Plavsky radioactive hotspot with typical dicotyledonous and monocotyledonous plants - galega (Galega orientalis, Fabaceae family) and bromegrass (Bromus inermis, Gramineae family) respectively - were selected for the investigation, that was conducted during the period of harvesting in 2015. An important point was that the other factors influenced on Cs-137 soil-to-plant transfer - the level of soil pollution, soil properties, climatic conditions, vegetative phase, etc. - were equal. So, biological features of Cs-137 root uptake could be estimated the most credible manner. As a whole, general discrimination of Cs-137 root uptake was clearly shown for both agricultural crops. Whereas Cs-137 activity in rhizosphere 30-cm layer of arable chernozem was 371±74 Bq/kg (140±32 kBq/m2), Cs-137 activities in plant biomass were one-two orders of magnitude less, and transfer factor (TF) values (the ratio of the Cs-137 activities in vegetation and in soil) not exceeded 0.11. At the same time bioavailability of Cs-137 for bromegrass was significantly higher than for galega: TFs in total biomass of the crops were 0.11 and 0.01 correspondingly. But the most dramatic difference between the investigated crops was connected with peculiarities of Cs-137 distribution within above- and belowground parts of biomass. While TF in aboveground fraction of galega (0.02) was slightly higher than in belowground fraction (0.01), the bulk of Cs-137 in bromegrass was detected not in shoots but in roots (TFs 0.05 and 0.11 correspondingly). More extensive examination of Cs-137 behavior in "soil-plant" systems of agricultural crops in the area of Plavsky radioactive hotspot has revealed that all investigated dicotyledonous plants with taproot system (potatoes, soya, amaranth, rape) accumulated 71±14% of Cs-137 inventories in aboveground biomass, whereas monocotyledonous plants with fibrous root system (wheat, barley, maize, cereal pasture species) deposited 94±5% of Cs-137 supplies in their belowground biomass. Thus, the first had effective biological root barrier protecting vegetation from general Cs-137 incorporation into biomass, but relatively active radionuclide translocation into shoots, while the second were characterized by slight rhizofiltration property and occurrence an additional barrier between roots and shoots determining only moderate radionuclide translocation into aboveground biomass. Such biological features should be taken into account in deciding on rehabilitation strategy of radioactively contaminated lands. The study was conducted with the support from the Russian Foundation for Basic Research (project no. 14-05-00903).

Matching agricultural freshwater supply and demand: using industrial and domestic treated wastewater for sub-irrigation purposes

NASA Astrophysics Data System (ADS)

Bartholomeus, Ruud; van den Eertwegh, Gé; Worm, Bas; Cirkel, Gijsbert; van Loon, Arnaut; Raat, Klaasjan

2017-04-01

Agricultural crop yields depend largely on soil moisture conditions in the root zone. Climate change leads to more prolonged drought periods that alternate with more intensive rainfall events. With unaltered water management practices, reduced crop yield due to drought stress will increase. Therefore, both farmers and water management authorities search for opportunities to manage risks of decreasing crop yields. Available groundwater sources for irrigation purposes are increasingly under pressure due to the regional coexistence of land use functions that are critical to groundwater levels or compete for available water. At the same time, treated wastewater from industries and domestic wastewater treatment plants are quickly discharged via surface waters towards sea. Exploitation of these freshwater sources may be an effective strategy to balance regional water supply and agricultural water demand. We present results of two pilot studies in drought sensitive regions in the Netherlands, concerning agricultural water supply through reuse of industrial and domestic treated wastewater. In these pilots, excess wastewater is delivered to the plant root zone through sub-irrigation by drainage systems. Sub-irrigation is a subsurface irrigation method that can be more efficient than classical, aboveground irrigation methods using sprinkler installations. Domestic wastewater treatment plants in the Netherlands produce annually 40-50mm freshwater. A pilot project has been setup in the eastern part of the Netherlands, in which treated wastewater is applied to a corn field by sub-irrigation during the growing seasons of 2015 and 2016, using a climate adaptive drainage system. The chemical composition of treated domestic wastewater is different from infiltrating excess rainfall water and natural groundwater. In the pilot project, the bromide-chloride ratio and traces of pharmaceuticals in the treated wastewater are used as a tracer to describe water and solute transport in the soil system. Focus of this pilot study is on quantifying potential contamination of both the root zone and the deeper groundwater with pharmaceutical residues. We have installed a field monitoring network at several locations in the vadose zone and the local groundwater system, which enables us to measure vertical solute profiles in the soil water by taking samples. Based on field data obtained during the experiments, combined with SWAP (1D) and Hydrus (2D) model simulations, flow and transport of the sub-irrigated treated wastewater are quantified. In the south of The Netherlands, the Bavaria Beer Brewery abstracts a large volume of groundwater and discharges treated wastewater to local surface water which transports the water rapidly out of the region. At the same time, neighboring farmers invest in sprinkler irrigation systems to maintain their crop production during drought periods. In this region, increasing pressure is put on the regional groundwater and surface water availability. Within a pilot study, a sub-irrigation system has been installed, by using subsurface drains, interconnected through a collector drain, and connected to an inlet control basin for the treated wastewater to enter the drainage system. We combine both process-based modeling of the soil-plant-atmosphere system and field experiments to i) investigate the amount of water that needs to be and that can be sub-irrigated, and ii) quantify the effect on soil moisture availability and herewith reduced needs for aboveground irrigation.

Biological subsoil management: new insights into processes of structure building and implications for crop growth

NASA Astrophysics Data System (ADS)

Athmann, Miriam; Kautz, Timo; Köpke, Ulrich

2017-04-01

Large sized continuous biopores (diameter > 2 mm) in arable subsoils can contribute to enhance soil aeration, increase water infiltration, reduce water runoff and serve as preferential pathways for root growth. Biopores can be generated by taproots, but these pores probably have limited physical stability unless they are colonized by anecic earthworms and coated with worm cast. Long-term field experiments have shown that populations of anecic earthworms and numbers of biopores are promoted by perennial fodder cropping, no-till cropping and reduced tillage systems, i.e. extended soil rest. Potential effects of biopores on root growth of annual crops include accelerating access to deep soil layers, facilitating exploitation of water while simultaneously allowing nutrient acquisition from the pore wall and the bulk soil. Biopores can be considered as hot spots for nutrient acquisition of crops, especially when the pore wall is enriched in nutrients as a consequence of deposition of decaying plant material and feces of earthworms. However, the extent of such effects largely depends on physical properties of the bulk soil. Preferential root growth through biopores has been observed in many types of subsoil. The role of biopores is expected to be relevant especially when rooting in the bulk soil is impeded by high penetration resistance. Nevertheless, in hard-setting clay soils clumping of roots has been reported, when roots were unable to re-enter the bulk soil from biopores' lumen. Recent field experiments on a deep loamy Haplic Luvisol indicated increased biopore density in the subsoil promoting root growth of winter cereals and winter oilseed rape not necessarily resulting in significant effects on shoot parameters. Nevertheless, in a dry year increased biopore density had beneficial effects on N uptake, root and shoot growth and grain yield of spring crops.

The Importance of Juvenile Root Traits for Crop Yields

NASA Astrophysics Data System (ADS)

White, Philip; Adu, Michael; Broadley, Martin; Brown, Lawrie; Dupuy, Lionel; George, Timothy; Graham, Neil; Hammond, John; Hayden, Rory; Neugebauer, Konrad; Nightingale, Mark; Ramsay, Gavin; Thomas, Catherine; Thompson, Jacqueline; Wishart, Jane; Wright, Gladys

2014-05-01

Genetic variation in root system architecture (RSA) is an under-exploited breeding resource. This is partly a consequence of difficulties in the rapid and accurate assessment of subterranean root systems. However, although the characterisation of root systems of large plants in the field are both time-consuming and labour-intensive, high-throughput (HTP) screens of root systems of juvenile plants can be performed in the field, glasshouse or laboratory. It is hypothesised that improving the root systems of juvenile plants can accelerate access to water and essential mineral elements, leading to rapid crop establishment and, consequently, greater yields. This presentation will illustrate how aspects of the juvenile root systems of potato (Solanum tuberosum L.) and oilseed rape (OSR; Brassica napus L.) correlate with crop yields and examine the reasons for such correlations. It will first describe the significant positive relationships between early root system development, phosphorus acquisition, canopy establishment and eventual yield among potato genotypes. It will report the development of a glasshouse assay for root system architecture (RSA) of juvenile potato plants, the correlations between root system architectures measured in the glasshouse and field, and the relationships between aspects of the juvenile root system and crop yields under drought conditions. It will then describe the development of HTP systems for assaying RSA of OSR seedlings, the identification of genetic loci affecting RSA in OSR, the development of mathematical models describing resource acquisition by OSR, and the correlations between root traits recorded in the HTP systems and yields of OSR in the field.

Developing ground penetrating radar (GPR) for enhanced root and soil organic carbon imaging: Optimizing bioenergy crop adaptation and agro-ecosystem services

NASA Astrophysics Data System (ADS)

Hays, D. B.; Delgado, A.; Bruton, R.; Dobreva, I. D.; Teare, B.; Jessup, R.; Rajan, N.; Bishop, M. P.; Lacey, R.; Neely, H.; Hons, F.; Novo, A.

2016-12-01

Selection of the ideal high biomass energy feedstock and crop cultivars for our national energy and production needs should consider not only the value of the harvested above ground feedstock, but also the local and global environmental services it provides in terms of terrestrial carbon (C) phyto-sequestration and improved soil organic matter enrichment. Selection of ideal crops cultivars is mature, while biofuel feedstock is well under way. What is lacking, however, is high throughput phenotyping (HTP) and integrated real-time data analysis technologies for selecting ideal genotypes within these crops that also confer recalcitrant high biomass or perennial root systems not only for C phyto-sequestration, but also for adaptation to conservation agro-ecosystems, increasing soil organic matter and soil water holding capacity. In no-till systems, significant studies have shown that increasing soil organic carbon is derived primarily from root and not above ground biomass. As such, efforts to increase plant soil phyto-sequestration will require a focus on developing optimal root systems within cultivated crops. We propose to achieve a significant advancement in the use of ground penetrating radar (GPR) as one approach to phenotype root biomass and 3D architecture, and to quantify soil carbon sequestration. In this context, GPR can be used for genotypic selection in breeding nurseries and unadapted germplasm with favorable root architectures, and for assessing management and nutrient practices that promote root growth. GPR has been used for over a decade to successfully map coarse woody roots. Only few have evaluated its efficacy for imaging finer fibrous roots found in grasses, or tap root species. The objectives of this project is to: i) Empirically define the optimal ground penetrating radar (GPR)-antenna array for 3D root and soil organic carbon imaging and quantification in high biomass grass systems; and ii) Develop novel 3- and 4-dimensional data analysis methodologies for using GPR for non-invasive crop root and soil C phyto-sequestration 3-D imaging and quantification within a spatially variable soil matrix. Current results and future directions will be presented and discussed.

Study of oil palm root architecture with variation of crop stage and soil type vulnerable to drought

NASA Astrophysics Data System (ADS)

Safitri, Lisma; Suryanti, Sri; Kautsar, Valensi; Kurniawan, Agung; Santiabudi, Fajar

2018-03-01

Root arhitecture is affected by watertable level, characteristic of soil, organic matter and also the crop stages. Root architecture spread horizontally and vertically which each consist of primary, secondary, tertiary and quaternary downward root. The oil palm root observation with variation of crop stage and soil type showed that the root of oil palm plant year 2008 on spodosols soil spread along 650 cm horizontally from the trunk and penetrate downward in range of 9-28 cm vertically. Planted in the same type of soil, the root of oil palm plant year 2004 spread along 650 cm horizontally and reached to downward in a larger range from 3 to 57 cm vertically. As a comparison, the root architecture of oil palm on inceptisols soil established the range much greater vertically than the previous. The root of oil palm plant year 2008 spread along 640 cm horizontally and penetrate downward in range of 52-90 cm vertically. With the variation of crop age, the root of oil palm plant year 2003 spread along 650 cm horizontally and reached to downward in a larger range from 150 to 200 cm vertically. Based on this study, root architecture of oil palm was varied and need to be detailed. The precise root architecture of oil palm allows a better understanding on hydrological properties of oil palm root particularly which is cultivated on soil type vulnerable to drought. Referring to this root architecture, it was enable to develop the study on early drought detection of oil palm to optimise production and towards oil palm sustainability.

Root Structure and Functioning for Efficient Acquisition of Phosphorus: Matching Morphological and Physiological Traits

PubMed Central

LAMBERS, HANS; SHANE, MICHAEL W.; CRAMER, MICHAEL D.; PEARSE, STUART J.; VENEKLAAS, ERIK J.

2006-01-01

• Background Global phosphorus (P) reserves are being depleted, with half-depletion predicted to occur between 2040 and 2060. Most of the P applied in fertilizers may be sorbed by soil, and not be available for plants lacking specific adaptations. On the severely P-impoverished soils of south-western Australia and the Cape region in South Africa, non-mycorrhizal species exhibit highly effective adaptations to acquire P. A wide range of these non-mycorrhizal species, belonging to two monocotyledonous and eight dicotyledonous families, produce root clusters. Non-mycorrhizal species with root clusters appear to be particularly effective at accessing P when its availability is extremely low. • Scope There is a need to develop crops that are highly effective at acquiring inorganic P (Pi) from P-sorbing soils. Traits such as those found in non-mycorrhizal root-cluster-bearing species in Australia, South Africa and other P-impoverished environments are highly desirable for future crops. Root clusters combine a specialized structure with a specialized metabolism. Native species with such traits could be domesticated or crossed with existing crop species. An alternative approach would be to develop future crops with root clusters based on knowledge of the genes involved in development and functioning of root clusters. • Conclusions Root clusters offer enormous potential for future research of both a fundamental and a strategic nature. New discoveries of the development and functioning of root clusters in both monocotyledonous and dicotyledonous families are essential to produce new crops with superior P-acquisition traits. PMID:16769731

Treated wastewater and Nitrate transport beneath irrigated fields near Dodge city, Kansas

USGS Publications Warehouse

Sophocleous, M.; Townsend, M.A.; Vocasek, F.; Ma, Liwang; Ashok, K.C.

2010-01-01

Use of secondary-treated municipal wastewater for crop irrigation south of Dodge City, Kansas, where the soils are mainly of silty clay loam texture, has raised a concern that it has resulted in high nitratenitrogen concentrations (10-50 mg/kg) in the soil and deeper vadose zone, and also in the underlying deep (20-45 m) ground water. The goal of this field-monitoring project was to assess how and under what circumstances nitrogen (N) nutrients under cultivated corn that is irrigated with this treated wastewater can reach the deep ground water of the underlying High Plains aquifer, and what can realistically be done to minimize this problem. We collected 15.2-m-deep cores for physical and chemical properties characterization; installed neutron moisture-probe access tubes and suction lysimeters for periodic measurements; sampled area monitoring, irrigation, and domestic wells; performed dye-tracer experiments to examine soil preferential-flow processes through macropores; and obtained climatic, crop, irrigation, and N-application rate records. These data and additional information were used in the comprehensive Root Zone Water Quality Model (RZWQM2) to identify key parameters and processes that influence N losses in the study area. We demonstrated that nitrate-N transport processes result in significant accumulations of N in the thick vadose zone. We also showed that nitrate-N in the underlying ground water is increasing with time and that the source of the nitrate is from the wastewater applications. RZWQM2 simulations indicated that macropore flow is generated particularly during heavy rainfall events, but during our 2005-06 simulations the total macropore flow was only about 3% of precipitation for one of two investigated sites, whereas it was more than 13% for the other site. Our calibrated model for the two wastewater-irrigated study sites indicated that reducing current levels of corn N fertilization by half or more to the level of 170 kg/ha substantially increases N-use efficiency and achieves near-maximum crop yield. Combining such measures with a crop rotation that includes alfalfa should further reduce the amounts of residual N in the soil, as indicated in one of the study sites that had alfalfa in past crop rotations.

How are arbuscular mycorrhizal associations related to maize growth performance during short-term cover crop rotation?

PubMed

Higo, Masao; Takahashi, Yuichi; Gunji, Kento; Isobe, Katsunori

2018-03-01

Better cover crop management options aiming to maximize the benefits of arbuscular mycorrhizal fungi (AMF) to subsequent crops are largely unknown. We investigated the impact of cover crop management methods on maize growth performance and assemblages of AMF colonizing maize roots in a field trial. The cover crop treatments comprised Italian ryegrass, wheat, brown mustard and fallow in rotation with maize. The diversity of AMF communities among cover crops used for maize management was significantly influenced by the cover crop and time course. Cover crops did not affect grain yield and aboveground biomass of subsequent maize but affected early growth. A structural equation model indicated that the root colonization, AMF diversity and maize phosphorus uptake had direct strong positive effects on yield performance. AMF variables and maize performance were related directly or indirectly to maize grain yield, whereas root colonization had a positive effect on maize performance. AMF may be an essential factor that determines the success of cover crop rotational systems. Encouraging AMF associations can potentially benefit cover cropping systems. Therefore, it is imperative to consider AMF associations and crop phenology when making management decisions. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Assessment of potential greenhouse gas mitigation from changes to crop root mass and architecture

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paustian, Keith; Campbell, Nell; Dorich, Chris

Reducing (and eventually reversing) the increase in greenhouse gases (GHGs) in the atmosphere due to human activities, and thus reducing the extent and severity of anthropogenic climate change, is one of the great challenges facing humanity. While most of the man-caused increase in GHGs has been due to fossil fuel use, land use (including agriculture) currently accounts for about 25% of total GHG emissions and thus there is a need to include emission reductions from the land use sector as part of an effective climate change mitigation strategy. In addition, analyses included in the recent IPCC 5th Climate Change Assessmentmore » report suggests that it may not be possible to achieve large enough emissions reductions in the energy, transport and industrial sectors alone to stabilize GHG concentrations at a level commensurate with a less than 2°C global average temperature increase, without the help of a substantial CO 2 sink (i.e., atmospheric CO 2 removal) from the land use sector. One of the potential carbon sinks that could contribute to this goal is increasing C storage in soil organic matter on managed lands. This report details a preliminary scoping analysis, to assess the potential agricultural area in the US – where appropriate soil, climate and land use conditions exist – to determine the land area on which ‘improved root phenotype’ crops could be deployed and to evaluate the potential long-term soil C storage, given a set of ‘bounding scenarios’ of increased crop root input and/or rooting depth for major crop species (e.g., row crops (corn, sorghum, soybeans), small grains (wheat, barley, oats), and hay and pasture perennial forages). The enhanced root phenotype scenarios assumed 25, 50 and 100% increase in total root C inputs, in combination with five levels of modifying crop root distributions (i.e., no change and four scenarios with increasing downward shift in root distributions). We also analyzed impacts of greater root production on the soil-crop nitrogen balance, from the standpoint of increased need for additional N inputs and consequences for increased N 2O flux, as well as potential impacts if more and deeper roots contributed to reduced N leaching. In the enhanced root phenotype scenarios, the implicit assumption was that increases in overall plant production could be achieved (e.g., through increased CO 2 assimilation, greater growth efficiency) without reducing the harvested yield – that is, we did not include potential leakage and land substitution effects from potential decreased crop yield in the analysis.« less

Vertical farming increases lettuce yield per unit area compared to conventional horizontal hydroponics.

PubMed

Touliatos, Dionysios; Dodd, Ian C; McAinsh, Martin

2016-08-01

Vertical farming systems (VFS) have been proposed as an engineering solution to increase productivity per unit area of cultivated land by extending crop production into the vertical dimension. To test whether this approach presents a viable alternative to horizontal crop production systems, a VFS (where plants were grown in upright cylindrical columns) was compared against a conventional horizontal hydroponic system (HHS) using lettuce ( Lactuca sativa L . cv. "Little Gem") as a model crop. Both systems had similar root zone volume and planting density. Half-strength Hoagland's solution was applied to plants grown in perlite in an indoor controlled environment room, with metal halide lamps providing artificial lighting. Light distribution (photosynthetic photon flux density, PPFD) and yield (shoot fresh weight) within each system were assessed. Although PPFD and shoot fresh weight decreased significantly in the VFS from top to base, the VFS produced more crop per unit of growing floor area when compared with the HHS. Our results clearly demonstrate that VFS presents an attractive alternative to horizontal hydroponic growth systems and suggest that further increases in yield could be achieved by incorporating artificial lighting in the VFS.

Nocturnal and daytime stomatal conductance respond to root-zone temperature in ‘Shiraz’ grapevines

PubMed Central

Rogiers, Suzy Y.; Clarke, Simon J.

2013-01-01

Background and Aims Daytime root-zone temperature may be a significant factor regulating water flux through plants. Water flux can also occur during the night but nocturnal stomatal response to environmental drivers such as root-zone temperature remains largely unknown. Methods Here nocturnal and daytime leaf gas exchange was quantified in ‘Shiraz’ grapevines (Vitis vinifera) exposed to three root-zone temperatures from budburst to fruit-set, for a total of 8 weeks in spring. Key Results Despite lower stomatal density, night-time stomatal conductance and transpiration rates were greater for plants grown in warm root-zones. Elevated root-zone temperature resulted in higher daytime stomatal conductance, transpiration and net assimilation rates across a range of leaf-to-air vapour pressure deficits, air temperatures and light levels. Intrinsic water-use efficiency was, however, lowest in those plants with warm root-zones. CO2 response curves of foliar gas exchange indicated that the maximum rate of electron transport and the maximum rate of Rubisco activity did not differ between the root-zone treatments, and therefore it was likely that the lower photosynthesis in cool root-zones was predominantly the result of a stomatal limitation. One week after discontinuation of the temperature treatments, gas exchange was similar between the plants, indicating a reversible physiological response to soil temperature. Conclusions In this anisohydric grapevine variety both night-time and daytime stomatal conductance were responsive to root-zone temperature. Because nocturnal transpiration has implications for overall plant water status, predictive climate change models using stomatal conductance will need to factor in this root-zone variable. PMID:23293018

Nocturnal and daytime stomatal conductance respond to root-zone temperature in 'Shiraz' grapevines.

PubMed

Rogiers, Suzy Y; Clarke, Simon J

2013-03-01

Daytime root-zone temperature may be a significant factor regulating water flux through plants. Water flux can also occur during the night but nocturnal stomatal response to environmental drivers such as root-zone temperature remains largely unknown. Here nocturnal and daytime leaf gas exchange was quantified in 'Shiraz' grapevines (Vitis vinifera) exposed to three root-zone temperatures from budburst to fruit-set, for a total of 8 weeks in spring. Despite lower stomatal density, night-time stomatal conductance and transpiration rates were greater for plants grown in warm root-zones. Elevated root-zone temperature resulted in higher daytime stomatal conductance, transpiration and net assimilation rates across a range of leaf-to-air vapour pressure deficits, air temperatures and light levels. Intrinsic water-use efficiency was, however, lowest in those plants with warm root-zones. CO(2) response curves of foliar gas exchange indicated that the maximum rate of electron transport and the maximum rate of Rubisco activity did not differ between the root-zone treatments, and therefore it was likely that the lower photosynthesis in cool root-zones was predominantly the result of a stomatal limitation. One week after discontinuation of the temperature treatments, gas exchange was similar between the plants, indicating a reversible physiological response to soil temperature. In this anisohydric grapevine variety both night-time and daytime stomatal conductance were responsive to root-zone temperature. Because nocturnal transpiration has implications for overall plant water status, predictive climate change models using stomatal conductance will need to factor in this root-zone variable.

Vegetative growth and cluster development in Shiraz grapevines subjected to partial root-zone cooling

PubMed Central

Rogiers, Suzy Y.; Clarke, Simon J.

2013-01-01

Heterogeneity in root-zone temperature both vertically and horizontally may contribute to the uneven vegetative and reproductive growth often observed across vineyards. An experiment was designed to assess whether the warmed half of a grapevine root zone could compensate for the cooled half in terms of vegetative growth and reproductive development. We divided the root system of potted Shiraz grapevines bilaterally and applied either a cool or a warm treatment to each half from budburst to fruit set. Shoot growth and inflorescence development were monitored over the season. Simultaneous cooling and warming of parts of the root system decreased shoot elongation, leaf emergence and leaf expansion below that of plants with a fully warmed root zone, but not to the same extent as those with a fully cooled root zone. Inflorescence rachis length, flower number and berry number after fertilization were smaller only in those vines exposed to fully cooled root zones. After terminating the treatments, berry enlargement and the onset of veraison were slowed in those vines that had been exposed to complete or partial root-zone cooling. Grapevines exposed to partial root-zone cooling were thus delayed in vegetative and reproductive development, but the inhibition was greater in those plants whose entire root system had been cooled. PMID:24244839

RoBuST: An Integrated Resource of Genomics Information for Plants in the Root and Bulb Crop Families Apiaceae and Alliaceae

USDA-ARS?s Scientific Manuscript database

Root and bulb vegetables (RBV) include carrots, celeriac (root celery), parsnips (Apiaceae), onions, garlic, and leek (Alliaceae) – food crops grown globally and consumed worldwide. Few data analysis platforms are currently available where data collection, annotation and integration initiatives are ...

Sensitivity of Active and Passive Microwave Observations to Soil Moisture during Growing Corn

NASA Astrophysics Data System (ADS)

Judge, J.; Monsivais-Huertero, A.; Liu, P.; De Roo, R. D.; England, A. W.; Nagarajan, K.

2011-12-01

Soil moisture (SM) in the root zone is a key factor governing water and energy fluxes at the land surface and its accurate knowledge is critical to predictions of weather and near-term climate, nutrient cycles, crop-yield, and ecosystem productivity. Microwave observations, such as those at L-band, are highly sensitive to soil moisture in the upper few centimeters (near-surface). The two satellite-based missions dedicated to soil moisture estimation include, the European Space Agency's Soil Moisture and Ocean Salinity (SMOS) mission and the planned NASA Soil Moisture Active/Passive (SMAP) [4] mission. The SMAP mission will include active and passive sensors at L-band to provide global observations of SM, with a repeat coverage of every 2-3 days. These observations can significantly improve root zone soil moisture estimates through data assimilation into land surface models (LSMs). Both the active (radar) and passive (radiometer) microwave sensors measure radiation quantities that are functions of soil dielectric constant and exhibit similar sensitivities to SM. In addition to the SM sensitivity, radar backscatter is highly sensitive to roughness of soil surface and scattering within the vegetation. These effects may produce a much larger dynamic range in backscatter than that produced due to SM changes alone. In this study, we discuss the field observations of active and passive signatures of growing corn at L-band from several seasons during the tenth Microwave, Water and Energy Balance Experiment (MicroWEX-10) conducted in North Central Florida, and to understand the sensitivity of these signatures to soil moisture under dynamic vegetation conditions. The MicroWEXs are a series of season-long field experiments conducted during the growing seasons of sweet corn, cotton, and energy cane over the past six years (for example, [22]). The corn was planted on July 5 and harvested on September 23, 2011 during MicroWEX-10. The size of the field was 0.04 km2 and the soils at the site were Lakeland fine sand, with 89% sand content by volume. The crop was heavily irrigated via a linear move irrigation system. Every 15-minute ground-based passive and active microwave observations at L-band were conducted at an incidence angle of 40°. In addition, concurrent observations were conducted of soil moisture, temperature, heat flux at various depths in the root zone, along with concurrent micrometeorological conditions. Weekly vegetation sampling included measurements of LAI, green and dry biomass of stems, leaves, and ears, crop height and width, vertical distribution of moisture in the canopy, leaf size and orientation, other phonological observations. Such observations at high temporal density allow detailed sensitivity analyses as the vegetation grows.

Algal derivatives may protect crops from residual soil salinity: a case study on a tomato-wheat rotation

NASA Astrophysics Data System (ADS)

Di Stasio, Emilio; Raimondi, Giampaolo; Van Oosten, Michael; Maggio, Albino

2017-04-01

In coastal areas, summer crops are frequently irrigated with saline water. As a consequence, salts may accumulate in the root zone with detrimental effects on the following winter crops if the rainfall is insufficient to leach them. Two field experiments were performed in 2015-2016 on a field used for tomato (summer) wheat (winter) rotation cropping. The spring-summer experiment was carried in order to evaluate the effect of two algal derivatives (Ascophyllum nodosum), Rygex and Super Fifty, on a tomato crop exposed to increasing salinity and reduced nutrient availability. In the autumn-winter experiment we investigated the effect of residual salts from the previous summer irrigations on plant growth and yield of wheat treated with the same two algal extracts. The salt treatment for the irrigated summer crop was 80 mM NaCl plus a non-salinized control. The nutrient regimes were 100% and 50% of the tomato nutritional requirements. With both the seaweeds applications the salt stressed plants were demonstrated improved Relative Water Content and water potential. Nevertheless the total fresh biomass and the fruit fresh weight were enhanced only in the non salinized controls. Application of algal derivatives increased the total fresh weight over controls in the non salinized plants. The seaweed treatments enhanced the fruit fresh weight with an increase of 30% and 46% for Rygex and Super Fifty, respectively. Preliminary analysis of the ion profile in roots, shoots and leaves, indicates that the seaweed extracts may enhance the assimilation of ions in fruits affecting their nutritional value. The residual salinity of the summer experiment reduced the wheat biomass production. However, the seaweed extracts treatments improved growth under salinity. In the salt stressed plants the Super Fifty application increased shoots and ears by 34% and 23% respectively, compared to the non treated plants. Plant height was increased by application of seaweeds extracts for both the species under residual salinity. Our results indicate that the application of seaweed extracts could be considered as a good production strategy for obtaining good growth and yields of valuable crops in resource-limited environments. Keywords: algal derivatives, residual salinity, wheat, tomato.

Mind the Roots: Phenotyping Below-Ground Crop Diversity and Its Influence on Final Yield

NASA Astrophysics Data System (ADS)

Nieters, C.; Guadagno, C. R.; Lemli, S.; Hosseini, A.; Ewers, B. E.

2017-12-01

Changes in global climate patterns and water regimes are having profound impacts on worldwide crop production. An ever-growing population paired with increasing temperatures and unpredictable periods of severe drought call for accurate modeling of future crop yield. Although novel approaches are being developed in high-throughput, above-ground image phenotyping, the below-ground plant system is still poorly phenotyped. Collection of plant root morphology and hydraulics are needed to inform mathematical models to reliably estimate yields of crops grown in sub-optimal conditions. We used Brassica rapa to inform our model as it is a globally cultivated crop with several functionally diverse cultivars. Specifically, we use 7 different accessions from oilseed (R500 and Yellow Sarson), leafy type (Pac choi and Chinese cabbage), a vegetable turnip, and two Wisconsin Fast Plants (Imb211 and Fast Plant self-compatible), which have shorter life cycles and potentially large differences in allocation to roots. Bi-weekly, we harvested above and below-ground biomass to compare the varieties in terms of carbon allocation throughout their life cycle. Using WinRhizo software, we analyzed root system length and surface area to compare and contrast root morphology among cultivars. Our results confirm that root structural characteristics are crucial to explain plant water use and carbon allocation. The root:shoot ratio reveals a significant (p < 0.01) difference among crop accession. To validate the procedure across different varieties and life stages we also compared surface area results from the image-based technology to dry biomass finding a strong linear relationship (R2= 0.85). To assess the influence of a diverse above-ground morphology on the root system we also measured above-ground anatomical and physiological traits such as gas exchange, chlorophyll content, and chlorophyll a fluorescence. A thorough analysis of the root system will clarify carbon dynamics and hydraulics at the whole-plant level, improving final yield predictions.

The evolution of root zone moisture storage capacities after deforestation: a step towards hydrological predictions under change?

NASA Astrophysics Data System (ADS)

Nijzink, Remko C.; Hutton, Christopher; Pechlivanidis, Ilias; Capell, René; Arheimer, Berit; Freer, Jim; Han, Dawei; Wagener, Thorsten; McGuire, Kevin; Savenije, Hubert; Hrachowitz, Markus

2017-04-01

The moisture storage available to vegetation is a key parameter in the hydrological functioning of ecosystems. This parameter, the root zone storage capacity, determines the partitioning between runoff and transpiration, but is impossible to observe at the catchment scale. In this research, data from the experimental forests of HJ Andrews (Oregon, USA) and Hubbard Brook (New Hampshire, USA) was used to test the hypotheses that: (1) the root zone storage capacity significantly changes after deforestation, (2) changes in the root zone storage capacity can to a large extent explain post-treatment changes to the hydrological regimes and that (3) a time-dynamic formulation of the root zone storage can improve the performance of a hydrological model. At first, root zone storage capacities were estimated based on a simple, water-balance based method. Briefly, the maximum difference between cumulative rainfall and estimated transpiration was determined, which could be considered a proxy for root zone storage capacity. These values were compared with root zone storage capacities obtained from four conceptual models (HYPE, HYMOD, FLEX, TUW), calibrated for consecutive 2-year windows. Both methods showed a sharp decline in root zone storage capacity after deforestation, which was followed by a gradual recovery signal. It was found in a trend analysis that these recovery periods took between 5 and 13 years for the different catchments. Eventually, one of the models was adjusted to allow for a time-dynamic formulation of root zone storage capacity. This adjusted model showed improvements in model performance as evaluated by 28 hydrological signatures, such as rising limb density or peak flows. Thus, this research clearly shows the time-dynamic character of a crucial parameter, which is often considered to remain constant in time. Root zone storage capacities are strongly affected by deforestation, leading to changes in hydrological regimes, and time-dynamic formulations of root zone storage are therefore necessary in systems under change.

Evaluating a satellite-based seasonal evapotranspiration product and identifying its relationship with other satellite-derived products and crop yield: A case study for Ethiopia

USGS Publications Warehouse

Tadesse, Tsegaye; Senay, Gabriel B.; Berhan, Getachew; Regassa, Teshome; Beyene, Shimelis

2015-01-01

Satellite-derived evapotranspiration anomalies and normalized difference vegetation index (NDVI) products from Moderate Resolution Imaging Spectroradiometer (MODIS) data are currently used for African agricultural drought monitoring and food security status assessment. In this study, a process to evaluate satellite-derived evapotranspiration (ETa) products with a geospatial statistical exploratory technique that uses NDVI, satellite-derived rainfall estimate (RFE), and crop yield data has been developed. The main goal of this study was to evaluate the ETa using the NDVI and RFE, and identify a relationship between the ETa and Ethiopia’s cereal crop (i.e., teff, sorghum, corn/maize, barley, and wheat) yields during the main rainy season. Since crop production is one of the main factors affecting food security, the evaluation of remote sensing-based seasonal ETa was done to identify the appropriateness of this tool as a proxy for monitoring vegetation condition in drought vulnerable and food insecure areas to support decision makers. The results of this study showed that the comparison between seasonal ETa and RFE produced strong correlation (R2 > 0.99) for all 41 crop growing zones in Ethiopia. The results of the spatial regression analyses of seasonal ETa and NDVI using Ordinary Least Squares and Geographically Weighted Regression showed relatively weak yearly spatial relationships (R2 < 0.7) for all cropping zones. However, for each individual crop zones, the correlation between NDVI and ETa ranged between 0.3 and 0.84 for about 44% of the cropping zones. Similarly, for each individual crop zones, the correlation (R2) between the seasonal ETa anomaly and de-trended cereal crop yield was between 0.4 and 0.82 for 76% (31 out of 41) of the crop growing zones. The preliminary results indicated that the ETa products have a good predictive potential for these 31 identified zones in Ethiopia. Decision makers may potentially use ETa products for monitoring cereal crop yields and early warning of food insecurity during drought years for these identified zones.

Evaluating a satellite-based seasonal evapotranspiration product and identifying its relationship with other satellite-derived products and crop yield: A case study for Ethiopia

NASA Astrophysics Data System (ADS)

Tadesse, Tsegaye; Senay, Gabriel B.; Berhan, Getachew; Regassa, Teshome; Beyene, Shimelis

2015-08-01

Satellite-derived evapotranspiration anomalies and normalized difference vegetation index (NDVI) products from Moderate Resolution Imaging Spectroradiometer (MODIS) data are currently used for African agricultural drought monitoring and food security status assessment. In this study, a process to evaluate satellite-derived evapotranspiration (ETa) products with a geospatial statistical exploratory technique that uses NDVI, satellite-derived rainfall estimate (RFE), and crop yield data has been developed. The main goal of this study was to evaluate the ETa using the NDVI and RFE, and identify a relationship between the ETa and Ethiopia's cereal crop (i.e., teff, sorghum, corn/maize, barley, and wheat) yields during the main rainy season. Since crop production is one of the main factors affecting food security, the evaluation of remote sensing-based seasonal ETa was done to identify the appropriateness of this tool as a proxy for monitoring vegetation condition in drought vulnerable and food insecure areas to support decision makers. The results of this study showed that the comparison between seasonal ETa and RFE produced strong correlation (R2 > 0.99) for all 41 crop growing zones in Ethiopia. The results of the spatial regression analyses of seasonal ETa and NDVI using Ordinary Least Squares and Geographically Weighted Regression showed relatively weak yearly spatial relationships (R2 < 0.7) for all cropping zones. However, for each individual crop zones, the correlation between NDVI and ETa ranged between 0.3 and 0.84 for about 44% of the cropping zones. Similarly, for each individual crop zones, the correlation (R2) between the seasonal ETa anomaly and de-trended cereal crop yield was between 0.4 and 0.82 for 76% (31 out of 41) of the crop growing zones. The preliminary results indicated that the ETa products have a good predictive potential for these 31 identified zones in Ethiopia. Decision makers may potentially use ETa products for monitoring cereal crop yields and early warning of food insecurity during drought years for these identified zones.

Survival or productivity? Global synthesis of root and tuber production during drought

NASA Astrophysics Data System (ADS)

Daryanto, S.; Wang, L.; Jacinthe, P. A.

2016-12-01

According to FAO, there are six major root and tuber crops: potato, cassava, sweet potato, yam, taro, and yautia. Some root and tuber crops (e.g., sweet potato and cassava) are considered to be `drought-resistant', although quantitative evidence that support the premise was still lacking. Greater uncertainties exist on how drought effects co-vary with: 1) soil texture, 2) agro-ecological region, and 3) drought timing. To address these uncertainties, we collected literature data between 1980 and 2015 that reported monoculture root and tuber yield responses to drought under field conditions, and analyzed this large data set using meta-analysis techniques. Our results showed that the amount of water reduction was positively related with yield reduction, but the extent of the impact varied with root or tuber species and the phenological phase during which drought occurred. In contrast to common assumptions regarding drought resistance of certain root and tuber crops, we found that yield reduction was similar between potato and species thought to be `drought-resistant' such as cassava and sweet potato. Here we suggest that drought-resistance in cassava and sweet potato could be more related to survival rather than yield. All roots or tubers crops, however, experienced greater yield reduction when drought occurred during the tuberization period compared to during their vegetative phase. The effect of soil texture as well as region (and related climatic factors) on yield reduction and crop sensitivity were less obvious. Our study provides useful information that could inform agricultural planning, and influence the direction of research for improving the productivity and the resilience of these under-utilized crops in the drought-prone regions of the world.

Modelling the impact of mulching the soil with plant remains on water regime formation, crop yield and energy costs in agricultural ecosystems

NASA Astrophysics Data System (ADS)

Gusev, Yeugeniy M.; Dzhogan, Larisa Y.; Nasonova, Olga N.

2018-02-01

The model MULCH, developed by authors previously for simulating the formation of water regime in an agricultural field covered by straw mulch layer, has been used for the comparative evaluation of the efficiency of four agricultural cultivation technologies, which are usually used for wheat production in different regions of Russia and Ukraine. It simulates the dynamics of water budget components in a soil rooting zone at daily time step from the beginning of spring snowmelt to the beginning of the period with stable negative air temperatures. The model was designed for estimation of mulching efficiency in terms of increase in plant water supply and crop yield under climatic and soil conditions of the steppe and forest-steppe zones. It is used for studying the mulching effect on some characteristics of water regime and yield of winter wheat growing at specific sites located in semi-arid and arid regions of the steppe and forest-steppe zones of the eastern and southern parts of the East-European (Russian) plain. In addition, a previously developed technique for estimating the energetic efficiency of various agricultural technologies with accounting for their impact on changes in soil energy is applied for the comparative evaluation of the efficiency of four agricultural cultivation technologies, which are usually used for wheat production in different regions of the steppe and forest-steppe zones of the European Russia: (1) moldboard tillage of soil without irrigation, (2) moldboard tillage of soil with irrigation, (3) subsurface cultivation, and (4) subsurface cultivation with mulching the soil with plant remains.

Root length densities of UK wheat and oilseed rape crops with implications for water capture and yield

PubMed Central

White, Charlotte A.; Sylvester-Bradley, Roger; Berry, Peter M.

2015-01-01

Root length density (RLD) was measured to 1 m depth for 17 commercial crops of winter wheat (Triticum aestivum) and 40 crops of winter oilseed rape [Brassica napus; oilseed rape (OSR)] grown in the UK between 2004 and 2013. Taking the critical RLD (cRLD) for water capture as 1cm cm–3, RLDs appeared inadequate for full water capture on average below a depth of 0.32 m for winter wheat and below 0.45 m for OSR. These depths compare unfavourably (for wheat) with average depths of ‘full capture’ of 0.86 m and 0.48 m, respectively, determined for three wheat crops and one OSR crop studied in the 1970s and 1980s, and treated as references here. A simple model of water uptake and yield indicated that these shortfalls in wheat and OSR rooting compared with the reference data might be associated with shortfalls of up to 3.5 t ha–1 and 1.2 t ha–1, respectively, in grain yields under water-limited conditions, as increasingly occur through climate change. Coupled with decreased summer rainfall, poor rooting of modern arable crops could explain much of the yield stagnation that has been observed on UK farms since the 1990s. Methods of monitoring and improving rooting under commercial conditions are reviewed and discussed. PMID:25750427

Comparison of DNDC and RZWQM2 for simulating hydrology and nitrogen dynamics in a corn-soybean system with a winter cover crop

NASA Astrophysics Data System (ADS)

Desjardins, R.; Smith, W.; Qi, Z.; Grant, B.; VanderZaag, A.

2017-12-01

Biophysical models are needed for assessing science-based mitigation options to improve the efficiency and sustainability of agricultural cropping systems. In order to account for trade-offs between environmental indicators such as GHG emissions, soil C change, and water quality it is important that models can encapsulate the complex array of interrelated biogeochemical processes controlling water, nutrient and energy flows in the agroecosystem. The Denitrification Decomposition (DNDC) model is one of the most widely used process-based models, and is arguably the most sophisticated for estimating GHG emissions and soil C&N cycling, however, the model simulates only simple cascade water flow. The purpose of this study was to compare the performance of DNDC to a comprehensive water flow model, the Root Zone Water Quality Model (RZWQM2), to determine which processes in DNDC may be limiting and recommend improvements. Both models were calibrated and validated for simulating crop biomass, soil hydrology, and nitrogen loss to tile drains using detailed observations from a corn-soybean rotation in Iowa, with and without cover crops. Results indicated that crop yields, biomass and the annual estimation of nitrogen and water loss to tiles drains were well simulated by both models (NSE > 0.6 in all cases); however, RZWQM2 performed much better for simulating soil water content, and the dynamics of daily water flow (DNDC: NSE -0.32 to 0.28; RZWQM2: NSE 0.34 to 0.70) to tile drains. DNDC overestimated soil water content near the soil surface and underestimated it deeper in the profile which was presumably caused by the lack of a root distribution algorithm, the inability to simulate a heterogeneous profile and lack of a water table. We recommend these improvements along with the inclusion of enhanced water flow and a mechanistic tile drainage sub-model. The accurate temporal simulation of water and N strongly impacts several biogeochemical processes.

How do soil physical conditions for crop growth vary over time under established contrasting tillage regimes?

NASA Astrophysics Data System (ADS)

Hallett, Paul; Stobart, Ron; Valentine, Tracy; George, Timothy; Morris, Nathan; Newton, Adrian; McKenzie, Blair

2014-05-01

When plant breeders develop modern cereal varieties for the sustainable intensification of agriculture, insufficient thought is given to the impact of tillage on soil physical conditions for crop production. In earlier work, we demonstrated that barley varieties that perform best in ploughed soil (the approach traditionally used for breeding trials) were not the same as those performing best under shallow non-inversion or zero-tillage. We also found that the Quantitative Trait Loci (QTL) associated with improved phosphorus uptake, and hence useful for marker assisted breeding, were not robust between different tillage regimes. The impact of the soil environment had greater impact than the genetics in GxE interactions. It is obvious that soil tillage should be considered when breeding the next generation of crops. Tillage may also have important impacts on carbon storage, but we found that despite greater soil carbon at shallow depths under non-inversion tillage, the carbon stored throughout the soil profile was not affected by tillage. Studies on soil tillage impacts to crop productivity and soil quality are often performed in one season, on single sites that have had insufficient time to develop. Our current research explores multiple sites, on different soils, with temporal measurements of soil physical conditions under contrasting tillage regimes. We use the oldest established contemporary tillage experiments in the United Kingdom, with all sites sharing ploughed and shallow (7cm) non-inversion tillage treatments. In eastern Scotland (Mid Pilmore), the site also has zero tillage and deep ploughing (40 cm) treatments, and was established 11 years ago. In east England there are two sites, both also having a deep non-inversion tillage treatment, and they were established 6 (New Farm Systems) and 8 (STAR) years ago. We measure a range of crop and soil properties at sowing, one month after sowing and post-harvest, including rapid lab based assays that allow high-throughput. Samples are taken over the rooting zone in the topsoil, plough pan and subsoil. The first year's dataset from this comprehensive project will be presented. Early data identified plough pans under shallow non-inversion tillage that will limit root growth at all sites. Aggregate stabilities vary as expected, with plough soils at shallow depth being less stable than non-inversion tillage, but greater stability in plough soils at greater depth due to incorporated organic matter. Very rapidly following cultivation, the seedbeds coalesce, resulting in a more challenging physical environment for crop growth. We are exploring the mechanisms in soil structure temporal dynamics in greater detail, including the resilience of seedbeds to structural degradation through natural weathering and the action of plants. These profound differences in soil conditions will impact the root ideotype of crops for these different conditions. This has implications for the way in which breeding and genotype selection is performed in the future. Ultimately, we aim to identify crop varieties suited to local soil conditions and management, possibly with root traits that boost yields and soil physical quality.

Effects of elevated CO2 on fine root dynamics in a Mojave Desert community: A FACE study

USGS Publications Warehouse

Phillips, D.L.; Johnson, M.G.; Tingey, D.T.; Catricala, C.E.; Hoyman, T.L.; Nowak, R.S.

2006-01-01

Fine roots (??? 1mm diameter) are critical in plant water and nutrient absorption, and it is important to understand how rising atmospheric CO2 will affect them as part of terrestrial ecosystem responses to global change. This study's objective was to determine effects of elevated CO2 on production, mortality, and standing crops of fine root length over 2 years in a free-air CO2 enrichment (FACE) facility in the Mojave Desert of southern Nevada, USA. Three replicate 25m diameter FACE rings were maintained at ambient (??? 370 ??mol mol-1) and elevated CO2 (??? 550 ??mol mol-1) atmospheric concentrations. Twenty-eight minirhizotron tubes were placed in each ring to sample three microsite locations: evergreen Larrea shrubs, drought-deciduous Ambrosia shrubs, and along systematic community transects (primarily in shrub interspaces which account for ??? 85% of the area). Seasonal dynamics were similar for ambient and elevated CO2: fine root production peaked in April-June, with peak standing crop occurring about 1 month later, and peak mortality occurring during the hot summer months, with higher values for all three measures in a wet year compared with a dry year. Fine root standing crop, production, and mortality were not significantly different between treatments except standing crop along community transects, where fine root length was significantly lower in elevated CO2. Fine root turnover (annual cumulative mortality/mean standing crop) ranged from 2.33 to 3.17 year-1, and was not significantly different among CO2 treatments, except for community transect tubes where it was significantly lower for elevated CO2. There were no differences in fine root responses to CO2 between evergreen (Larrea) and drought-deciduous (Ambrosia) shrubs. Combined with observations of increased leaf-level water-use efficiency and lack of soil moisture differences, these results suggest that under elevated CO2 conditions, reduced root systems (compared with ambient CO2) appear sufficient to provide resources for modest aboveground production increases across the community, but in more fertile shrub microsites, fine root systems of comparable size with those in ambient CO2 were required to support the greater aboveground production increases. For community transects, development of the difference in fine root standing crops occurred primarily through lower stimulation of fine root production in the elevated CO2 treatment during periods of high water availability. ?? 2005 Blackwell Publishing Ltd.

Soil-test N recommendations augmented with PEST-optimized RZWQM simulations

USGS Publications Warehouse

Malone, R.W.; Jaynes, D.B.; Ma, Liwang; Nolan, B.T.; Meek, D.W.; Karlen, D.L.

2010-01-01

Improved understanding of year-to-year late-spring soil nitrate test (LSNT) variability could help make it more attractive to producers. We test the ability of the Root Zone Water Quality Model (RZWQM) to simulate watershed-scale variability due to the LSNT, and we use the optimized model to simulate long-term field N dynamics under related conditions. Autoregressive techniques and the automatic parameter calibration program PEST were used to show that RZWQM simulates significantly lower nitrate concentration in discharge from LSNT treatments compared with areas receiving fall N fertilizer applications within the tile-drained Walnut Creek, Iowa, watershed (>5 mg N L-1 difference for the third year of the treatment, 1999). This result is similar to field-measured data from a paired watershed experiment. A statistical model we developed using RZWQM simulations from 1970 to 2005 shows that early-season precipitation and early-season temperature account for 90% of the interannual variation in LSNT-based fertilizer N rates. Long-term simulations with similar average N application rates for corn (Zea mays L.) (151 kg N ha-1) show annual average N loss in tile flow of 20.4, 22.2, and 27.3 kg N ha -1 for LSNT, single spring, and single fall N applications. These results suggest that (i) RZWQM is a promising tool to accurately estimate the water quality effects of LSNT; (ii) the majority of N loss difference between LSNT and fall applications is because more N remains in the root zone for crop uptake; and (iii) year-to-year LSNT-based N rate differences are mainly due to variation in early-season precipitation and temperature. Copyright ?? 2010 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

Vegetation root zone storage and rooting depth, derived from local calibration of a global hydrological model

NASA Astrophysics Data System (ADS)

van der Ent, R.; Van Beek, R.; Sutanudjaja, E.; Wang-Erlandsson, L.; Hessels, T.; Bastiaanssen, W.; Bierkens, M. F.

2017-12-01

The storage and dynamics of water in the root zone control many important hydrological processes such as saturation excess overland flow, interflow, recharge, capillary rise, soil evaporation and transpiration. These processes are parameterized in hydrological models or land-surface schemes and the effect on runoff prediction can be large. Root zone parameters in global hydrological models are very uncertain as they cannot be measured directly at the scale on which these models operate. In this paper we calibrate the global hydrological model PCR-GLOBWB using a state-of-the-art ensemble of evaporation fields derived by solving the energy balance for satellite observations. We focus our calibration on the root zone parameters of PCR-GLOBWB and derive spatial patterns of maximum root zone storage. We find these patterns to correspond well with previous research. The parameterization of our model allows for the conversion of maximum root zone storage to root zone depth and we find that these correspond quite well to the point observations where available. We conclude that climate and soil type should be taken into account when regionalizing measured root depth for a certain vegetation type. We equally find that using evaporation rather than discharge better allows for local adjustment of root zone parameters within a basin and thus provides orthogonal data to diagnose and optimize hydrological models and land surface schemes.

Vegetation root zone storage and rooting depth, derived from local calibration of a global hydrological model

NASA Astrophysics Data System (ADS)

van der Ent, Ruud; van Beek, Rens; Sutanudjaja, Edwin; Wang-Erlandsson, Lan; Hessels, Tim; Bastiaanssen, Wim; Bierkens, Marc

2017-04-01

The storage and dynamics of water in the root zone control many important hydrological processes such as saturation excess overland flow, interflow, recharge, capillary rise, soil evaporation and transpiration. These processes are parameterized in hydrological models or land-surface schemes and the effect on runoff prediction can be large. For root zone parameters in global hydrological models are very uncertain as they cannot be measured directly at the scale on which these models operate. In this paper we calibrate the global hydrological model PCR-GLOBWB using a state-of-the-art ensemble of evaporation fields derived by solving the energy balance for satellite observations. We focus our calibration on the root zone parameters of PCR-GLOBWB and derive spatial patterns of maximum root zone storage. We find these patterns to correspond well with previous research. The parameterization of our model allows for the conversion of maximum root zone storage to root zone depth and we find that these correspond quite well to the point observations where available. We conclude that climate and soil type should be taken into account when regionalizing measured root depth for a certain vegetation type. We equally find that using evaporation rather than discharge better allows for local adjustment of root zone parameters within a basin and thus provides orthogonal data to diagnose and optimize hydrological models and land surface schemes.

One way. Or another? Iron uptake in plants.

PubMed

Tsai, Huei-Hsuan; Schmidt, Wolfgang

2017-04-01

Iron (Fe) and phosphorus (P), the latter taken up by plants as phosphate (Pi), are two essential nutrients that determine species distribution and often limit crop yield as a result of their low availability in most soils. Pi-deficient plants improve the interception of Pi by increasing the density of root hairs, thereby expanding the volume of soil to be explored. The increase in root-hair frequency results mainly from attenuated primary root growth, a process that was shown to be dependent on the availability of external Fe. Recent data support a hypothesis in which cell elongation during Pi starvation is tuned by depositing Fe in the apoplast of cortical cells in the root elongation zone. Uptake of Fe under Pi starvation appears to proceed via an alternative, as yet unidentified, route that bypasses the default Fe transporter. Fe deposits acquired through this noncanonical Fe-uptake pathway compromises cell-to-cell communication that is critical for proper morphogenesis of epidermal cells and leads to shorter cells and higher root-hair density. An auxiliary Fe-uptake system might not only be crucial for recalibrating cell elongation in Pi-deficient plants but may also have general importance for growth on Pi- or Fe-poor soils by balancing the Pi and Fe supply. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Microgravity effects on water supply and substrate properties in porous matrix root support systems

NASA Technical Reports Server (NTRS)

Bingham, G. E.; Jones, S. B.; Or, D.; Podolski, I. G.; Levinskikh, M. A.; Sytchov, V. N.; Ivanova, T.; Kostov, P.; Sapunova, S.; Dandolov, I.;

Polar transport of 45Ca2+ across the elongation zone of gravistimulated roots

NASA Technical Reports Server (NTRS)

Lee, J. S.; Evans, M. L.

1985-01-01

The movement of calcium across the elongation zone of gravistimulated primary roots of maize (Zea mays L.) was measured using 45Ca2+. Radioactive calcium was applied to one side of the elongation zone about 4 mm back from the root tip and the distribution of radioactivity across the root in the region of application was determined using scintillation spectrometry. The movement of 45Ca2+ across the elongation zone was non-polar in vertically oriented roots. In gravistimulated roots the movement of label was polarized with about twice as much label moving from top to bottom as from bottom to top. A variety of treatments which interfere with gravitropism was found to eliminate the polar movement of 45Ca2+ across the elongation zone. In maize cultivars which require light for gravitropic competency, dark grown roots exhibited neither gravitropism nor polar movement of 45Ca2+ across the elongation zone. Upon illumination the roots developed but gravitropic competency and gravity-induced polar movement of 45Ca2+ across the elongation zone. Similarly, roots of light-grown seedlings lost both gravitropic competency and 45Ca2+ transport polarity upon transfer to the dark. The results indicate a close correlation between calcium movement and gravitropism in primary roots in maize.

Drought and Heat Differentially Affect XTH Expression and XET Activity and Action in 3-Day-Old Seedlings of Durum Wheat Cultivars with Different Stress Susceptibility

PubMed Central

Iurlaro, Andrea; De Caroli, Monica; Sabella, Erika; De Pascali, Mariarosaria; Rampino, Patrizia; De Bellis, Luigi; Perrotta, Carla; Dalessandro, Giuseppe; Piro, Gabriella; Fry, Stephen C.; Lenucci, Marcello S.

2016-01-01

Heat and drought stress have emerged as major constraints for durum wheat production. In the Mediterranean area, their negative effect on crop productivity is expected to be exacerbated by the occurring climate change. Xyloglucan endotransglucosylase/hydrolases (XTHs) are chief enzymes in cell wall remodeling, whose relevance in cell expansion and morphogenesis suggests a central role in stress responses. In this work the potential role of XTHs in abiotic stress tolerance was investigated in durum wheat. The separate effects of dehydration and heat exposure on XTH expression and its endotransglucosylase (XET) in vitro activity and in vivo action have been monitored, up to 24 h, in the apical and sub-apical root regions and shoots excised from 3-day-old seedlings of durum wheat cultivars differing in stress susceptibility/tolerance. Dehydration and heat stress differentially influence the XTH expression profiles and the activity and action of XET in the wheat seedlings, depending on the degree of susceptibility/tolerance of the cultivars, the organ, the topological region of the root and, within the root, on the gradient of cell differentiation. The root apical region was the zone mainly affected by both treatments in all assayed cultivars, while no change in XET activity was observed at shoot level, irrespective of susceptibility/tolerance, confirming the pivotal role of the root in stress perception, signaling, and response. Conflicting effects were observed depending on stress type: dehydration evoked an overall increase, at least in the apical region of the root, of XET activity and action, while a significant inhibition was caused by heat treatment in most cultivars. The data suggest that differential changes in XET action in defined portions of the root of young durum wheat seedlings may have a role as a response to drought and heat stress, thus contributing to seedling survival and crop establishment. A thorough understanding of the mechanisms underlying these variations could represent the theoretical basis for implementing breeding strategies to develop new highly productive hybrids adapted to future climate scenarios. PMID:27891140

Application of a single root-scale model to improve macroscopic modeling of root water uptake: focus on osmotic stress

NASA Astrophysics Data System (ADS)

Jorda, Helena; Perelman, Adi; Lazarovitch, Naftali; Vanderborght, Jan

2017-04-01

Root water uptake is a fundamental process in the hydrological cycle and it largely regulates the water balance in the soil vadose zone. Macroscopic stress functions are currently used to estimate the effect of salinity on root water uptake. These functions commonly assume stress to be a function of bulk salinity and of the plant sensitivity to osmotic stress expressed as the salinity at which transpiration is reduced by half or so called tolerance value. However, they fail to integrate additional relevant factors such as atmospheric conditions or root architectural traits. We conducted a comprehensive simulation study on a single root using a 3-D physically-based model that resolves flow and transport to individual root segments and that couples flow in the soil and root system. The effect of salt concentrations on root water uptake was accounted for by including osmotic water potential gradients between the solution at the soil root interface and the root xylem sap in the hydraulic gradient between the soil and root. A large set of factors were studied, namely, potential transpiration rate and dynamics, root length density (RLD), irrigation water quality and irrigation frequency, and leaching fraction. Results were fitted to the macroscopic function developed by van Genuchten and Hoffman (1984) and the dependency of osmotic stress and the fitted macroscopic parameters on the studied factors was evaluated. Osmotic stress was found to be highly dependent on RLD. Low RLDs result in a larger stress to the plant due to high evaporative demand per root length unit. In addition, osmotic stress was positively correlated to potential transpiration rate, and sinusoidal potential transpiration lead to larger stress than when imposed as a constant boundary condition. Macroscopic parameters are usually computed as single values for each crop and used for the entire growing season. However, our study shows that both tolerance value and shape parameter p from the van Genuchten and Hoffman (1984) function were highly dependent on both potential transpiration and RLD. Plant salt tolerance was lower under high evaporative demand and lower RLD. In addition, the shape of the stress curve, which is defined by p, was found to be steeper under larger RLD and low transpiration rate. Time-variant macroscopic parameters based on knowledge of current potential transpiration rate per root unit length would be more convenient to accurately predict osmotic stress, and hence root water uptake, during a growing season. In a next step, simulations considering the whole root systems will be conducted to assess how macroscopic parameters are also related to root architectural characteristics. van Genuchten, M.T., Hoffman, G., 1984. Analysis of crop production. Soil Salin. Irrig. Springer Berl. 258-271.

Morphological plasticity of root growth under mild water stress increases water use efficiency without reducing yield in maize

NASA Astrophysics Data System (ADS)

Cai, Qian; Zhang, Yulong; Sun, Zhanxiang; Zheng, Jiaming; Bai, Wei; Zhang, Yue; Liu, Yang; Feng, Liangshan; Feng, Chen; Zhang, Zhe; Yang, Ning; Evers, Jochem B.; Zhang, Lizhen

2017-08-01

A large yield gap exists in rain-fed maize (Zea mays L.) production in semi-arid regions, mainly caused by frequent droughts halfway through the crop-growing period due to uneven distribution of rainfall. It is questionable whether irrigation systems are economically required in such a region since the total amount of rainfall does generally meet crop requirements. This study aimed to quantitatively determine the effects of water stress from jointing to grain filling on root and shoot growth and the consequences for maize grain yield, above- and below-ground dry matter, water uptake (WU) and water use efficiency (WUE). Pot experiments were conducted in 2014 and 2015 with a mobile rain shelter to achieve conditions of no, mild or severe water stress. Maize yield was not affected by mild water stress over 2 years, while severe stress reduced yield by 56 %. Both water stress levels decreased root biomass slightly but shoot biomass substantially. Mild water stress decreased root length but increased root diameter, resulting in no effect on root surface area. Due to the morphological plasticity in root growth and the increase in root / shoot ratio, WU under water stress was decreased, and overall WUE for both above-ground dry matter and grain yield increased. Our results demonstrate that an irrigation system might be not economically and ecologically necessary because the frequently occurring mild water stress did not reduce crop yield much. The study helps us to understand crop responses to water stress during a critical water-sensitive period (middle of the crop-growing season) and to mitigate drought risk in dry-land agriculture.

CO2 and N-fertilization effects on fine-root length, production, and mortality: a 4-year ponderosa pine study.

PubMed

Phillips, Donald L; Johnson, Mark G; Tingey, David T; Storm, Marjorie J; Ball, J Timothy; Johnson, Dale W

2006-06-01

We conducted a 4-year study of juvenile Pinus ponderosa fine root (< or =2 mm) responses to atmospheric CO2 and N-fertilization. Seedlings were grown in open-top chambers at three CO2 levels (ambient, ambient+175 mumol/mol, ambient+350 mumol/mol) and three N-fertilization levels (0, 10, 20 g m(-2) year(-1)). Length and width of individual roots were measured from minirhizotron video images bimonthly over 4 years starting when the seedlings were 1.5 years old. Neither CO2 nor N-fertilization treatments affected the seasonal patterns of root production or mortality. Yearly values of fine-root length standing crop (m m(-2)), production (m m(-2) year(-1)), and mortality (m m(-2) year(-1)) were consistently higher in elevated CO2 treatments throughout the study, except for mortality in the first year; however, the only statistically significant CO2 effects were in the fine-root length standing crop (m m(-2)) in the second and third years, and production and mortality (m m(-2) year(-1)) in the third year. Higher mortality (m m(-2) year(-1)) in elevated CO2 was due to greater standing crop rather than shorter life span, as fine roots lived longer in elevated CO2. No significant N effects were noted for annual cumulative production, cumulative mortality, or mean standing crop. N availability did not significantly affect responses of fine-root standing crop, production, or mortality to elevated CO2. Multi-year studies at all life stages of trees are important to characterize belowground responses to factors such as atmospheric CO2 and N-fertilization. This study showed the potential for juvenile ponderosa pine to increase fine-root C pools and C fluxes through root mortality in response to elevated CO2.

Development and assessment of an efficient vadose zone module solving the 1D Richards' equation and including root extraction by plants

NASA Astrophysics Data System (ADS)

Varado, N.; Braud, I.; Ross, P. J.

2006-05-01

From the non iterative numerical method proposed by [Ross, P.J., 2003. Modeling soil water and solute transport—fast, simplified numerical solutions. Agronomy Journal 95, 1352-1361] for solving the 1D Richards' equation, an unsaturated zone module for large scale hydrological model is developed by the inclusion of a root extraction module and a formulation of interception. Two root water uptake modules, first proposed by [Lai, C.-T. and Katul, G., 2000. The dynamic role of rott-water uptake in coupling potential to actual transpiration. Adv. Water Res. 23: 427-439; Li, K.Y., De Jong, R. and Boisvert, J.B., 2001. An exponential root-water-uptake model with water stress compensation. J. Hydrol. 252: 189-204], were included as the sink term in the Richards' equation. They express root extraction as a linear function of potential transpiration and take into account water stress and compensation mechanism allowing water to be extracted in wetter layers. The vadose zone module is tested in a systematic way with synthetic data sets covering a wide range of soil characteristics, climate forcing, and vegetation cover. A detailed SVAT model providing an accurate solution of the coupled heat and water transfer in the soil and the surface energy balance is used as a reference. The accuracy of the numerical solution using only the SVAT soil module, and the loss of accuracy when using a potential evapotranspiration instead of solving the energy budget are both investigated. The vadose zone module is very accurate with errors of less than a few percent for cumulative transpiration. Soil evaporation is less accurately simulated as it leads to a systematic underestimation of soil evaporation amounts. The [Lai, C.-T. and Katul, G., 2000. The dynamic role of rott-water uptake in coupling potential to actual transpiration. Adv. Water Res. 23: 427-439] module is not adapted for sandy soils, due to a weakness in the compensation term formulation. When using a potential evapotranspiration instead of the surface energy balance, we evidenced a difference in partitioning the energy between the soil and the vegetation. A Beer-Lambert law is not able to take into account the complex interactions at the soil-vegetation-atmopshere interface. However, under field conditions, the accuracy of the vadose zone module is satisfactory provided that a correct crop coefficient could be defined. As a conclusion the numerical method proposed by [Ross, P.J., 2003. Modeling soil water and solute transport—fast, simplified numerical solutions. Agronomy Journal 95, 1352-1361] coupled with the [Li, K.Y., De Jong, R. and Boisvert, J.B., 2001. An exponential root-water-uptake model with water stress compensation. J. Hydrol. 252: 189-204] root extraction module provides an efficient and accurate solution for inclusion as a physically-based infiltration-evapotranspiration module into larger scale watershed models.

Biological Control beneath the Feet: A Review of Crop Protection against Insect Root Herbivores.

PubMed

Kergunteuil, Alan; Bakhtiari, Moe; Formenti, Ludovico; Xiao, Zhenggao; Defossez, Emmanuel; Rasmann, Sergio

2016-11-29

Sustainable agriculture is certainly one of the most important challenges at present, considering both human population demography and evidence showing that crop productivity based on chemical control is plateauing. While the environmental and health threats of conventional agriculture are increasing, ecological research is offering promising solutions for crop protection against herbivore pests. While most research has focused on aboveground systems, several major crop pests are uniquely feeding on roots. We here aim at documenting the current and potential use of several biological control agents, including micro-organisms (viruses, bacteria, fungi, and nematodes) and invertebrates included among the macrofauna of soils (arthropods and annelids) that are used against root herbivores. In addition, we discuss the synergistic action of different bio-control agents when co-inoculated in soil and how the induction and priming of plant chemical defense could be synergized with the use of the bio-control agents described above to optimize root pest control. Finally, we highlight the gaps in the research for optimizing a more sustainable management of root pests.

Biological Control beneath the Feet: A Review of Crop Protection against Insect Root Herbivores

PubMed Central

Kergunteuil, Alan; Bakhtiari, Moe; Formenti, Ludovico; Xiao, Zhenggao; Defossez, Emmanuel; Rasmann, Sergio

2016-01-01

Sustainable agriculture is certainly one of the most important challenges at present, considering both human population demography and evidence showing that crop productivity based on chemical control is plateauing. While the environmental and health threats of conventional agriculture are increasing, ecological research is offering promising solutions for crop protection against herbivore pests. While most research has focused on aboveground systems, several major crop pests are uniquely feeding on roots. We here aim at documenting the current and potential use of several biological control agents, including micro-organisms (viruses, bacteria, fungi, and nematodes) and invertebrates included among the macrofauna of soils (arthropods and annelids) that are used against root herbivores. In addition, we discuss the synergistic action of different bio-control agents when co-inoculated in soil and how the induction and priming of plant chemical defense could be synergized with the use of the bio-control agents described above to optimize root pest control. Finally, we highlight the gaps in the research for optimizing a more sustainable management of root pests. PMID:27916820

A suggestion for planning cover crop mixtures: zones of occupancy

USDA-ARS?s Scientific Manuscript database

Producers may be able to improve the competitiveness of cover crop mixtures by selecting species to occupy zones in the cover crop canopy. This suggestion is based on a study where we compared four cover crop treatments, 1, 3, 6, and 9 species mixtures, for biomass production. Treatments were est...

Optimizing root system architecture in biofuel crops for sustainable energy production and soil carbon sequestration.

PubMed

To, Jennifer Pc; Zhu, Jinming; Benfey, Philip N; Elich, Tedd

2010-09-08

Root system architecture (RSA) describes the dynamic spatial configuration of different types and ages of roots in a plant, which allows adaptation to different environments. Modifications in RSA enhance agronomic traits in crops and have been implicated in soil organic carbon content. Together, these fundamental properties of RSA contribute to the net carbon balance and overall sustainability of biofuels. In this article, we will review recent data supporting carbon sequestration by biofuel crops, highlight current progress in studying RSA, and discuss future opportunities for optimizing RSA for biofuel production and soil carbon sequestration.

Watershed Analysis of Nitrate Transport as a Result of Agricultural Inputs for Varying Land Use/Land Cover and Soil Type

NASA Astrophysics Data System (ADS)

Scott, M. E.; Sykes, J. F.

2006-12-01

The Grand River Watershed is one of the largest watersheds in southwestern Ontario with an area of approximately 7000 square kilometers. Ninety percent of the watershed is classified as rural, and 80 percent of the watershed population relies on groundwater as their source of drinking water. Management of the watershed requires the determination of the effect of agricultural practices on long-term groundwater quality and to identify locations within the watershed that are at a higher risk of contamination. The study focuses on the transport of nitrate through the root zone as a result of agricultural inputs with attenuation due to biodegradation. The driving force for transport is spatially and temporally varying groundwater recharge that is a function of land use/land cover, soil and meteorological inputs that yields 47,229 unique soil columns within the watershed. Fertilizer sources are determined from Statistics Canada's Agricultural Census and include livestock manure and a popular commercial fertilizer, urea. Accounting for different application rates yields 60,066 unique land parcels of which 22,809 are classified as croplands where manure and inorganic fertilizes are directly applied. The transport for the croplands is simulated over a 14-year period to investigate the impact of seasonal applications of nitrate fertilizers on the concentration leaching from the root zone to the water table. Based on land use/land cover maps, ArcView GIS is used to define the location of fertilizer applications within the watershed and to spatially visualize data and analyze results. The large quantity of input data is stored and managed using MS-Access and a relational database management system. Nitrogen transformations and ammonium and nitrate uptake by plants and transport through the soil column are simulated on a daily basis using Visual Basic for Applications (VBA) within MS-Access modules. Nitrogen transformations within the soil column were simplified using parameters that were obtained from literature or could be calculated from readily available soil information for the Grand River Watershed. Spatially and seasonally averaged results for the 14 year period indicate that nitrate leaching through the root zone does not exceed the maximum contaminant level (MCL) of 10 mg/l nitrate. However, in 1992, over 12 percent of the watershed area in crops exceeded the MCL during the winter season. The characteristically well drained soils of the central region of the watershed are more susceptible to groundwater contamination following autumn manure-N applications, as no crop-growth is present to remove excess nitrogen from the system. Therefore, farm best management practices do not ensure that groundwater contamination will not occur. This research is an important first step in developing agricultural contaminant loadings for a watershed scale surface water and groundwater model. Municipalities can utilize this model as a management tool to determine the extent of contamination and delineate site sensitive locations, such as well-head protection zones. Other applications of this model include risk assessments of contaminant migration due to climate change predictions, varying fertilizer application practices, modifications in crop management and changes in land use. The impact of climate change on recharge has been investigated.

Is rhizosphere remediation sufficient for sustainable revegetation of mine tailings?

PubMed

Huang, Longbin; Baumgartl, Thomas; Mulligan, David

2012-07-01

Revegetation of mine tailings (fine-grained waste material) starts with the reconstruction of root zones, consisting of a rhizosphere horizon (mostly topsoil and/or amended tailings) and the support horizon beneath (i.e. equivalent to subsoil - mostly tailings), which must be physically and hydro-geochemically stable. This review aims to discuss key processes involved in the development of functional root zones within the context of direct revegetation of tailings and introduces a conceptual process of rehabilitating structure and function in the root zones based on a state transition model. Field studies on the revegetation of tailings (from processing base metal ore and bauxite residues) are reviewed. Particular focus is given to tailings' properties that limit remediation effectiveness. Aspects of root zone reconstruction and vegetation responses are also discussed. When reconstructing a root zone system, it is critical to restore physical structure and hydraulic functions across the whole root zone system. Only effective and holistically restored systems can control hydro-geochemical mobility of acutely and chronically toxic factors from the underlying horizon and maintain hydro-geochemical stability in the rhizosphere. Thereafter, soil biological capacity and ecological linkages (i.e. carbon and nutrient cycling) may be rehabilitated to integrate the root zones with revegetated plant communities into sustainable plant ecosystems. A conceptual framework of system transitions between the critical states of root zone development has been proposed. This will illustrate the rehabilitation process in root zone reconstruction and development for direct revegetation with sustainable plant communities. Sustainable phytostabilization of tailings requires the systematic consideration of hydro-geochemical interactions between the rhizosphere and the underlying supporting horizon. It further requires effective remediation strategies to develop hydro-geochemically stable and biologically functional root zones, which can facilitate the recovery of the microbial community and ecological linkages with revegetated plant communities.

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.

PubMed

Uga, Yusaku; Sugimoto, Kazuhiko; Ogawa, Satoshi; Rane, Jagadish; Ishitani, Manabu; Hara, Naho; Kitomi, Yuka; Inukai, Yoshiaki; Ono, Kazuko; Kanno, Noriko; Inoue, Haruhiko; Takehisa, Hinako; Motoyama, Ritsuko; Nagamura, Yoshiaki; Wu, Jianzhong; Matsumoto, Takashi; Takai, Toshiyuki; Okuno, Kazutoshi; Yano, Masahiro

2013-09-01

The genetic improvement of drought resistance is essential for stable and adequate crop production in drought-prone areas. Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle. DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity. Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction. Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar. Our experiments suggest that control of root system architecture will contribute to drought avoidance in crops.

Alteration of soil water content consequent to root-pruning at a windbreak/crop interface in Nebraska, USA

Treesearch

Qingjiang Hou; James Brandle; Kenneth Hubbard; Michele Schoeneberger; Carlos Nieto; Charles Francis

2003-01-01

Root-pruning is generally recommended as an appropriate treatment to reduce competition for soil water and/or nutrients and suppression of crop yield in areas adjacent to windbreaks. Several recent studies suggest, however, that factors other than soil water might be causing yield reduction at the interface. For two consecutive years, we evaluated root-pruning effects...

Root phenotypic differences across a historical gradient of wheat genotypes alter soil rhizosphere communities and their impact on nitrogen cycling

NASA Astrophysics Data System (ADS)

Kallenbach, C.; Junaidi, D.; Fonte, S.; Byrne, P. F.; Wallenstein, M. D.

2017-12-01

Plants and soil microorganisms can exhibit coevolutionary relationships where, for example, in exchange for root carbon, rhizosphere microbes enhance plant fitness through improved plant nutrient availability. Organic agriculture relies heavily on these interactions to enhance crop nitrogen (N) availability. However, modern agriculture and breeding under high mineral N fertilization may have disrupted these interactions through alterations to belowground carbon inputs and associated impacts on the soil microbiome. As sustainability initiatives lead to a restoration of agricultural soil organic matter, modern crop cultivars may still be constrained by crop roots' ability to effectively support microbial-mediated N mineralization. We investigated how differences in root traits across a historical gradient of spring wheat genotypes influence the rhizosphere microbial community and effects on soil N and wheat yield. Five genotypes, representing wild (Wild), pre-Green Revolution (Old), and modern (Modern) wheat, were grown under greenhouse conditions in soils with and without compost to also compare genotype response to difference in native soil microbiomes and organic resource availability. We analyzed rhizosphere soils for microbial community composition, enzyme activities, inorganic N, and microbial biomass. Root length density, surface area, fine root volume and root:shoot ratio were higher in the Wild and Old genotype (Gypsum) compared to the two Modern genotypes (P<0.01). The Wild and Old genotype had a more positive response to compost for root length and diameter, N-cycling enzyme activities, microbial biomass, and soil inorganic N, compared to Modern genotypes. However, under unamended soils, the microbial community and soil N were not affected by genotypes. We also relate how root traits and N cycling across genotypes correspond to microbial community composition. Our preliminary data suggest that the older wheat genotypes and their root traits are more effective at enhancing microbial N mineralization under organically managed soils. Thus, to optimize crop N availability from organic sources, breeding efforts should consider incorporating root traits of older genotypes to better support the beneficial interactions between crop roots and their rhizosphere microbiome.

Weed control and cover crop management affect mycorrhizal colonization of grapevine roots and arbuscular mycorrhizal fungal spore populations in a California vineyard.

PubMed

Baumgartner, Kendra; Smith, Richard F; Bettiga, Larry

2005-03-01

Arbuscular mycorrhizal (AM) fungi naturally colonize grapevines in California vineyards. Weed control and cover cropping may affect AM fungi directly, through destruction of extraradical hyphae by soil disruption, or indirectly, through effects on populations of mycorrhizal weeds and cover crops. We examined the effects of weed control (cultivation, post-emergence herbicides, pre-emergence herbicides) and cover crops (Secale cereale cv. Merced rye, x Triticosecale cv.Trios 102) on AM fungi in a Central Coast vineyard. Seasonal changes in grapevine mycorrhizal colonization differed among weed control treatments, but did not correspond with seasonal changes in total weed frequency. Differences in grapevine colonization among weed control treatments may be due to differences in mycorrhizal status and/or AM fungal species composition among dominant weed species. Cover crops had no effect on grapevine mycorrhizal colonization, despite higher spring spore populations in cover cropped middles compared to bare middles. Cover crops were mycorrhizal and shared four AM fungal species (Glomus aggregatum, G. etunicatum, G. mosseae, G. scintillans) in common with grapevines. Lack of contact between grapevine roots and cover crop roots may have prevented grapevines from accessing higher spore populations in the middles.

Ethylene Inhibits Root Elongation during Alkaline Stress through AUXIN1 and Associated Changes in Auxin Accumulation1

PubMed Central

Li, Juan; Xu, Heng-Hao; Liu, Wen-Cheng; Zhang, Xiao-Wei

2015-01-01

Soil alkalinity causes major reductions in yield and quality of crops worldwide. The plant root is the first organ sensing soil alkalinity, which results in shorter primary roots. However, the mechanism underlying alkaline stress-mediated inhibition of root elongation remains to be further elucidated. Here, we report that alkaline conditions inhibit primary root elongation of Arabidopsis (Arabidopsis thaliana) seedlings by reducing cell division potential in the meristem zones and that ethylene signaling affects this process. The ethylene perception antagonist silver (Ag+) alleviated the inhibition of root elongation by alkaline stress. Moreover, the ethylene signaling mutants ethylene response1-3 (etr1-3), ethylene insensitive2 (ein2), and ein3-1 showed less reduction in root length under alkaline conditions, indicating a reduced sensitivity to alkalinity. Ethylene biosynthesis also was found to play a role in alkaline stress-mediated root inhibition; the ethylene overproducer1-1 mutant, which overproduces ethylene because of increased stability of 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE5, was hypersensitive to alkaline stress. In addition, the ethylene biosynthesis inhibitor cobalt (Co2+) suppressed alkaline stress-mediated inhibition of root elongation. We further found that alkaline stress caused an increase in auxin levels by promoting expression of auxin biosynthesis-related genes, but the increase in auxin levels was reduced in the roots of the etr1-3 and ein3-1 mutants and in Ag+/Co2+-treated wild-type plants. Additional genetic and physiological data showed that AUXIN1 (AUX1) was involved in alkaline stress-mediated inhibition of root elongation. Taken together, our results reveal that ethylene modulates alkaline stress-mediated inhibition of root growth by increasing auxin accumulation by stimulating the expression of AUX1 and auxin biosynthesis-related genes. PMID:26109425

Mitigating Groundwater Depletion in North China Plain with Cropping System that Alternate Deep and Shallow Rooted Crops

PubMed Central

Yang, Xiao-Lin; Chen, Yuan-Quan; Steenhuis, Tammo S.; Pacenka, Steven; Gao, Wang-Sheng; Ma, Li; Zhang, Min; Sui, Peng

2017-01-01

In the North China Plain, groundwater tables have been dropping at unsustainable rates of 1 m per year due to irrigation of a double cropping system of winter wheat and summer maize. To reverse the trend, we examined whether alternative crop rotations could save water. Moisture contents were measured weekly at 20 cm intervals in the top 180 cm of soil as part of a 12-year field experiment with four crop rotations: sweet potato→ cotton→ sweet potato→ winter wheat-summer maize (SpCSpWS, 4-year cycle); peanuts → winter wheat-summer maize (PWS, 2-year cycle); ryegrass–cotton→ peanuts→ winter wheat-summer maize (RCPWS, 3-year cycle); and winter wheat-summer maize (WS, each year). We found that, compared to WS, the SpCSpWS annual evapotranspiration was 28% lower, PWS was 19% lower and RCPWS was 14% lower. The yield per unit of water evaporated improved for wheat within any alternative rotation compared to WS, increasing up to 19%. Average soil moisture contents at the sowing date of wheat in the SpCSpWS, PWS, and RCPWS rotations were 7, 4, and 10% higher than WS, respectively. The advantage of alternative rotations was that a deep rooted crop of winter wheat reaching down to 180 cm followed shallow rooted crops (sweet potato and peanut drawing soil moisture from 0 to 120 cm). They benefited from the sequencing and vertical complementarity of soil moisture extraction. Thus, replacing the traditional crop rotation with cropping system that involves rotating with annual shallow rooted crops is promising for reducing groundwater depletion in the North China Plain. PMID:28642779

The Potential of Five Winter-grown Crops to Reduce Root-knot Nematode Damage and Increase Yield of Tomato

PubMed Central

López-Pérez, Jose Antonio; Roubtsova, Tatiana; de Cara García, Miguel

2010-01-01

Broccoli (Brassica oleracea), carrot (Daucus carota), marigold (Tagetes patula), nematode-resistant tomato (Solanum lycopersicum), and strawberry (Fragaria ananassa) were grown for three years during the winter in a root-knot nematode (Meloidogyne incognita) infested field in Southern California. Each year in the spring, the tops of all crops were shredded and incorporated in the soil. Amendment with poultry litter was included as a sub-treatment. The soil was then covered with clear plastic for six weeks and M. incognita-susceptible tomato was grown during the summer season. Plastic tarping raised the average soil temperature at 13 cm depth by 7°C.The different winter-grown crops or the poultry litter did not affect M. incognita soil population levels. However, root galling on summer tomato was reduced by 36%, and tomato yields increased by 19% after incorporating broccoli compared to the fallow control. This crop also produced the highest amount of biomass of the five winter-grown crops. Over the three-year trial period, poultry litter increased tomato yields, but did not affect root galling caused by M. incognita. We conclude that cultivation followed by soil incorporation of broccoli reduced M. incognita damage to tomato. This effect is possibly due to delaying or preventing a portion of the nematodes to reach the host roots. We also observed that M. incognita populations did not increase under a host crop during the cool season when soil temperatures remained low (< 18°C). PMID:22736848

Climatically driven yield variability of major crops in Khakassia (South Siberia)

NASA Astrophysics Data System (ADS)

Babushkina, Elena A.; Belokopytova, Liliana V.; Zhirnova, Dina F.; Shah, Santosh K.; Kostyakova, Tatiana V.

2018-06-01

We investigated the variability of yield of the three main crop cultures in the Khakassia Republic: spring wheat, spring barley, and oats. In terms of yield values, variability characteristics, and climatic response, the agricultural territory of Khakassia can be divided into three zones: (1) the Northern Zone, where crops yield has a high positive response to the amount of precipitation, May-July, and a moderately negative one to the temperatures of the same period; (2) the Central Zone, where crops yield depends mainly on temperatures; and (3) the Southern Zone, where climate has the least expressed impact on yield. The dominant pattern in the crops yield is caused by water stress during periods of high temperatures and low moisture supply with heat stress as additional reason. Differences between zones are due to combinations of temperature latitudinal gradient, precipitation altitudinal gradient, and the presence of a well-developed hydrological network and the irrigational system as moisture sources in the Central Zone. More detailed analysis shows differences in the climatic sensitivity of crops during phases of their vegetative growth and grain development and, to a lesser extent, during harvesting period. Multifactor linear regression models were constructed to estimate climate- and autocorrelation-induced variability of the crops yield. These models allowed prediction of the possibility of yield decreasing by at least 2-11% in the next decade due to increasing of the regional summer temperatures.

Climatically driven yield variability of major crops in Khakassia (South Siberia)

NASA Astrophysics Data System (ADS)

Babushkina, Elena A.; Belokopytova, Liliana V.; Zhirnova, Dina F.; Shah, Santosh K.; Kostyakova, Tatiana V.

2017-12-01

We investigated the variability of yield of the three main crop cultures in the Khakassia Republic: spring wheat, spring barley, and oats. In terms of yield values, variability characteristics, and climatic response, the agricultural territory of Khakassia can be divided into three zones: (1) the Northern Zone, where crops yield has a high positive response to the amount of precipitation, May-July, and a moderately negative one to the temperatures of the same period; (2) the Central Zone, where crops yield depends mainly on temperatures; and (3) the Southern Zone, where climate has the least expressed impact on yield. The dominant pattern in the crops yield is caused by water stress during periods of high temperatures and low moisture supply with heat stress as additional reason. Differences between zones are due to combinations of temperature latitudinal gradient, precipitation altitudinal gradient, and the presence of a well-developed hydrological network and the irrigational system as moisture sources in the Central Zone. More detailed analysis shows differences in the climatic sensitivity of crops during phases of their vegetative growth and grain development and, to a lesser extent, during harvesting period. Multifactor linear regression models were constructed to estimate climate- and autocorrelation-induced variability of the crops yield. These models allowed prediction of the possibility of yield decreasing by at least 2-11% in the next decade due to increasing of the regional summer temperatures.

[Effects of different crop rotations on growth of continuous cropping sorghum and its rhizosphere soil micro-environment.

PubMed

Wang, Jin Song; Fan, Fang Fang; Guo, Jun; Wu, Ai Lian; Dong, Er Wei; Bai, Wen Bin; Jiao, Xiao Yan

2016-07-01

The effects of crop rotation on sorghum [Sorghum biocolor (L) Moench] growth, rhizosphere microbial community and the activity of soil enzymes for successive crops of sorghum were evaluated. Five years of continuous monoculture sorghum as the control (CK) was compared to alfalfa and scallion planted in the fourth year. The results showed that incorporation of alfalfa and scallion into the rotation significantly improved sorghum shoot growth. Specifically, sorghum grain yield increased by 16.5% in the alfalfa rotation plots compared to the CK. The rotations also increased sorghum root system growth, with alfalfa or scallion rotation increasing sorghum total root length by 0.3 and 0.4 times, total root surface area by 0.6 and 0.5 times, root volume by 1.2 and 0.6 times, and root biomass by 1.0 and 0.3 times, respectively. Alfalfa rotation also expanded sorghum root distribution below the 10 cm soil depth. A Biolog analysis on biome functions in the sorghum flowering period indicated significantly higher microbial activity in the rotation plots. The alfalfa and scallion rotation increased the Shannon index by 0.2 and 0.1 times compared to the CK, and improved the sucrose activity in the rhizosphere soil. It was concluded that including alfalfa in rotation with sorghum improved sorghum rhizosphere soil environment, enhanced soil microbial enzyme activity, alleviated the obstacle of continuous cropping and thus increased the sorghum yield.

Evolution of the Crop Rhizosphere: Impact of Domestication on Root Exudates in Tetraploid Wheat (Triticum turgidum L.)

PubMed Central

Iannucci, Anna; Fragasso, Mariagiovanna; Beleggia, Romina; Nigro, Franca; Papa, Roberto

2017-01-01

Domestication has induced major genetic changes in crop plants to satisfy human needs and as a consequence of adaptation to agroecosystems. This adaptation might have affected root exudate composition, which can influence the interactions in the rhizosphere. Here, using two different soil types (sand, soil), we provide an original example of the impact of domestication and crop evolution on root exudate composition through metabolite profiling of root exudates for a panel of 10 wheat genotypes that correspond to the key steps in domestication of tetraploid wheat (wild emmer, emmer, durum wheat). Our data show that soil type can dramatically affect the composition of root exudates in the rhizosphere. Moreover, the composition of the rhizosphere metabolites is associated with differences among the genotypes of the wheat domestication groups, as seen by the high heritability of some of the metabolites. Overall, we show that domestication and breeding have had major effects on root exudates in the rhizosphere, which suggests the adaptive nature of these changes. PMID:29326736

The Evolution of Root Zone Storage Capacity after Land Use Change

NASA Astrophysics Data System (ADS)

Nijzink, Remko C.; Hutton, Christopher; Pechlivanidis, Ilias; Capell, René; Arheimer, Berit; Wagener, Thorsten; Savenije, Hubert H. G.; Hrachowitz, Markus

2016-04-01

Root zone storage capacity forms a crucial parameter in ecosystem functioning as it is the key parameter that determines the partitioning between runoff and transpiration. There is increasing evidence from several case studies for specific plants that vegetation adapts to the critical situation of droughts. For example, trees will, on the long term, try to improve their internal hydraulic conductivity after droughts, for example by allocating more biomass for roots. In spite of this understanding, the water storage capacity in the root zone is often treated as constant in hydrological models. In this study, it was hypothesized that root zone storage capacities are altered by deforestation and the regrowth of the ecosystem. Three deforested sub catchments as well as not affected, nearby control catchments of the experimental forests of HJ Andrews and Hubbard Brook were selected for this purpose. Root zone storage capacities were on the one hand estimated by a climate-based approach similar to Gao et al. (2014), making use of simple water balance considerations to determine the evaporative demand of the system. In this way, the maximum deficit between evaporative demand and precipitation allows a robust estimation of the root zone storage capacity. On the other hand, three conceptual hydrological models (FLEX, HYPE, HYMOD) were calibrated in a moving window approach for all catchments. The obtained model parameter values representing the root zone storage capacities of the individual catchments for each moving window period were then compared to the estimates derived from climate data for the same periods. Model- and climate-derived estimates of root zone storage capacities both showed a similar evolution. In the deforested catchments, considerable reductions of the root zone storage capacities, compared to the pre-treatment situation and control catchments, were observed. In addition, the years after forest clearing were characterized by a gradual recovery of the root zone storage capacities, converging to new equilibrium conditions and linked to forest regrowth. Further trend analysis suggested a relatively quick hydrological recovery between 5 and 15 years in the study catchments. The results lend evidence to the role of both, climate and vegetation dynamics for the development of root zone systems and their controlling influence on hydrological response dynamics.

Use of thermal infrared and colour infrared imagery to detect crop moisture stress. [Alberta, Canada

NASA Technical Reports Server (NTRS)

Mckenzie, R. C.; Clark, N. F.; Cihlar, J. (Principal Investigator)

1979-01-01

The author has identified the following significant results. In the presence of variable plant cover (primarily percent cover) and variable available water content, the remotely sensed apparent temperatures correlate closely with plant cover and poorly with soil water. To the extent that plant cover is not systematically related to available soil water, available water in the root zone values may not be reliably predicted from the thermal infrared data. On the other hand, if plant cover is uniform and the soil surface is shown in a minor way, the thermal data indicate plant stress and consequently available water in the soil profile.

Identification of tree-crop rootstocks with resistance to Armillaria root disease.

USDA-ARS?s Scientific Manuscript database

Armillaria root disease attacks a broad range of tree crops in California. Instead of re-tooling ineffective conventional controls, namely soil fumigation, we focused on identification of Armillaria-resistant Juglans rootstocks, as part of a collaborative project to identify rootstocks with resistan...

Starch grains reveal early root crop horticulture in the Panamanian tropical forest.

PubMed

Piperno, D R; Ranere, A J; Holst, I; Hansell, P

2000-10-19

Native American populations are known to have cultivated a large number of plants and domesticated them for their starch-rich underground organs. Suggestions that the likely source of many of these crops, the tropical forest, was an early and influential centre of plant husbandry have long been controversial because the organic remains of roots and tubers are poorly preserved in archaeological sediments from the humid tropics. Here we report the occurrence of starch grains identifiable as manioc (Manihot esculenta Crantz), yams (Dioscorea sp.) and arrowroot (Maranta arundinacea L.) on assemblages of plant milling stones from preceramic horizons at the Aguadulce Shelter, Panama, dated between 7,000 and 5,000 years before present (BP). The artefacts also contain maize starch (Zea mays L.), indicating that early horticultural systems in this region were mixtures of root and seed crops. The data provide the earliest direct evidence for root crop cultivation in the Americas, and support an ancient and independent emergence of plant domestication in the lowland Neotropical forest.

Rhizo-lysimetry: facilities for the simultaneous study of root behaviour and resource use by agricultural crop and pasture systems

PubMed Central

2013-01-01

Background Rhizo-lysimeters offer unique advantages for the study of plants and their interactions with soils. In this paper, an existing facility at Charles Sturt University in Wagga Wagga Australia is described in detail and its potential to conduct both ecophysiological and ecohydrological research in the study of root interactions of agricultural crops and pastures is quantitatively assessed. This is of significance to future crop research efforts in southern Australia, in light of recent significant long-term drought events, as well as potential impacts of climate change as predicted for the region. The rhizo-lysimeter root research facility has recently been expanded to accommodate larger research projects over multiple years and cropping rotations. Results Lucerne, a widely-grown perennial pasture in southern Australia, developed an expansive root system to a depth of 0.9 m over a twelve month period. Its deeper roots particularly at 2.05 m continued to expand for the duration of the experiment. In succeeding experiments, canola, a commonly grown annual crop, developed a more extensive (approximately 300%) root system than wheat, but exhibited a slower rate of root elongation at rates of 7.47 x 10–3 m day–1 for canola and 1.04 x10–2 m day–1 for wheat. A time domain reflectometry (TDR) network was designed to accurately assess changes in soil water content, and could assess water content change to within 5% of the amount of water applied. Conclusions The rhizo-lysimetry system provided robust estimates of root growth and soil water change under conditions representative of a field setting. This is currently one of a very limited number of global research facilities able to perform experimentation under field conditions and is the largest root research experimental laboratory in the southern hemisphere. PMID:23363534

A new generic plant growth model framework (PMF): Simulating distributed dynamic interaction of biomass production and its interaction with water and nutrients fluxes

NASA Astrophysics Data System (ADS)

Multsch, Sebastian; Kraft, Philipp; Frede, Hans-Georg; Breuer, Lutz

2010-05-01

Today, crop models have a widespread application in natural sciences, because plant growth interacts and modifies the environment. Transport processes involve water and nutrient uptake from the saturated and unsaturated zone in the pedosphere. Turnover processes include the conversion of dead root biomass into organic matter. Transpiration and the interception of radiation influence the energy exchange between atmosphere and biosphere. But many more feedback mechanisms might be of interest, including erosion, soil compaction or trace gas exchanges. Most of the existing crop models have a closed structure and do not provide interfaces or code design elements for easy data transfer or process exchange with other models during runtime. Changes in the model structure, the inclusion of alternative process descriptions or the implementation of additional functionalities requires a lot of coding. The same is true if models are being upscaled from field to landscape or catchment scale. We therefore conclude that future integrated model developments would benefit from a model structure that has the following requirements: replaceability, expandability and independency. In addition to these requirements we also propose the interactivity of models, which means that models that are being coupled are highly interacting and depending on each other, i.e. the model should be open for influences from other independent models and react on influences directly. Hence, a model which consists of building blocks seems to be reasonable. The aim of the study is the presentation of the new crop model type, the plant growth model framework, PMF. The software concept refers to an object-oriented approach, which is developed with the Unified Modeling Language (UML). The model is implemented with Python, a high level object-oriented programming language. The integration of the models with a setup code enables the data transfer on the computer memory level and direct exchange of information about changing boundary conditions. The crop model concept refers to two main elements. A plant model, which represents an abstract network of plant organs and processes and a process library, which holds mathematical solutions for the growth processes. Growth processes were mainly taken from existing, well known crop models such as SUCROS and CERES. The crop specific properties of root architecture are described based on a maximum rooting depth and a vertical growth rate. The biomass distribution depends on an interactive allocation process due to the soil layers with a daily time step. In order to show the performance and capabilities of PMF, the model is coupled with the Catchment Modeling Framework (CMF) and the simple nitrogen mineralization model DeComp. The main feature of the integrated model set up is the interaction between root growth, water uptake and nitrogen supply of the soil. We show a virtual case study on the hillslope scale and spatially dependence of water and nitrogen stress based on topographic position and seasonal development.

Transient Proliferation of Proanthocyanidin-Accumulating Cells on the Epidermal Apex Contributes to Highly Aluminum-Resistant Root Elongation in Camphor Tree1[W

PubMed Central

Osawa, Hiroki; Endo, Izuki; Hara, Yukari; Matsushima, Yuki; Tange, Takeshi

2011-01-01

Aluminum (Al) is a harmful element that rapidly inhibits the elongation of plant roots in acidic soils. The release of organic anions explains Al resistance in annual crops, but the mechanisms that are responsible for superior Al resistance in some woody plants remain unclear. We examined cell properties at the surface layer of the root apex in the camphor tree (Cinnamomum camphora) to understand its high Al resistance mechanism. Exposure to 500 μm Al for 8 d, more than 20-fold higher concentration and longer duration than what soybean (Glycine max) can tolerate, only reduced root elongation in the camphor tree to 64% of the control despite the slight induction of citrate release. In addition, Al content in the root apices was maintained at low levels. Histochemical profiling revealed that proanthocyanidin (PA)-accumulating cells were present at the adjacent outer layer of epidermis cells at the root apex, having distinctive zones for cell division and the early phase of cell expansion. Then the PA cells were gradually detached off the root, leaving thin debris behind, and the root surface was replaced with the elongating epidermis cells at the 3- to 4-mm region behind the tip. Al did not affect the proliferation of PA cells or epidermis cells, except for the delay in the start of expansion and the accelerated detachment of the former. In soybean roots, the innermost lateral root cap cells were absent in both PA accumulation and active cell division and failed to protect the epidermal cell expansion at 25 μm Al. These results suggest that transient proliferation and detachment of PA cells may facilitate the expansion of epidermis cells away from Al during root elongation in camphor tree. PMID:21045123

Transient proliferation of proanthocyanidin-accumulating cells on the epidermal apex contributes to highly aluminum-resistant root elongation in camphor tree.

PubMed

Osawa, Hiroki; Endo, Izuki; Hara, Yukari; Matsushima, Yuki; Tange, Takeshi

2011-01-01

Aluminum (Al) is a harmful element that rapidly inhibits the elongation of plant roots in acidic soils. The release of organic anions explains Al resistance in annual crops, but the mechanisms that are responsible for superior Al resistance in some woody plants remain unclear. We examined cell properties at the surface layer of the root apex in the camphor tree (Cinnamomum camphora) to understand its high Al resistance mechanism. Exposure to 500 μm Al for 8 d, more than 20-fold higher concentration and longer duration than what soybean (Glycine max) can tolerate, only reduced root elongation in the camphor tree to 64% of the control despite the slight induction of citrate release. In addition, Al content in the root apices was maintained at low levels. Histochemical profiling revealed that proanthocyanidin (PA)-accumulating cells were present at the adjacent outer layer of epidermis cells at the root apex, having distinctive zones for cell division and the early phase of cell expansion. Then the PA cells were gradually detached off the root, leaving thin debris behind, and the root surface was replaced with the elongating epidermis cells at the 3- to 4-mm region behind the tip. Al did not affect the proliferation of PA cells or epidermis cells, except for the delay in the start of expansion and the accelerated detachment of the former. In soybean roots, the innermost lateral root cap cells were absent in both PA accumulation and active cell division and failed to protect the epidermal cell expansion at 25 μm Al. These results suggest that transient proliferation and detachment of PA cells may facilitate the expansion of epidermis cells away from Al during root elongation in camphor tree.

Root Apex Transition Zone As Oscillatory Zone

PubMed Central

Baluška, František; Mancuso, Stefano

2013-01-01

Root apex of higher plants shows very high sensitivity to environmental stimuli. The root cap acts as the most prominent plant sensory organ; sensing diverse physical parameters such as gravity, light, humidity, oxygen, and critical inorganic nutrients. However, the motoric responses to these stimuli are accomplished in the elongation region. This spatial discrepancy was solved when we have discovered and characterized the transition zone which is interpolated between the apical meristem and the subapical elongation zone. Cells of this zone are very active in the cytoskeletal rearrangements, endocytosis and endocytic vesicle recycling, as well as in electric activities. Here we discuss the oscillatory nature of the transition zone which, together with several other features of this zone, suggest that it acts as some kind of command center. In accordance with the early proposal of Charles and Francis Darwin, cells of this root zone receive sensory information from the root cap and instruct the motoric responses of cells in the elongation zone. PMID:24106493

Influence of ecohydrologic feedbacks from simulated crop growth on integrated regional hydrologic simulations under climate scenarios

NASA Astrophysics Data System (ADS)

van Walsum, P. E. V.; Supit, I.

2012-06-01

Hydrologic climate change modelling is hampered by climate-dependent model parameterizations. To reduce this dependency, we extended the regional hydrologic modelling framework SIMGRO to host a two-way coupling between the soil moisture model MetaSWAP and the crop growth simulation model WOFOST, accounting for ecohydrologic feedbacks in terms of radiation fraction that reaches the soil, crop coefficient, interception fraction of rainfall, interception storage capacity, and root zone depth. Except for the last, these feedbacks are dependent on the leaf area index (LAI). The influence of regional groundwater on crop growth is included via a coupling to MODFLOW. Two versions of the MetaSWAP-WOFOST coupling were set up: one with exogenous vegetation parameters, the "static" model, and one with endogenous crop growth simulation, the "dynamic" model. Parameterization of the static and dynamic models ensured that for the current climate the simulated long-term averages of actual evapotranspiration are the same for both models. Simulations were made for two climate scenarios and two crops: grass and potato. In the dynamic model, higher temperatures in a warm year under the current climate resulted in accelerated crop development, and in the case of potato a shorter growing season, thus partly avoiding the late summer heat. The static model has a higher potential transpiration; depending on the available soil moisture, this translates to a higher actual transpiration. This difference between static and dynamic models is enlarged by climate change in combination with higher CO2 concentrations. Including the dynamic crop simulation gives for potato (and other annual arable land crops) systematically higher effects on the predicted recharge change due to climate change. Crop yields from soils with poor water retention capacities strongly depend on capillary rise if moisture supply from other sources is limited. Thus, including a crop simulation model in an integrated hydrologic simulation provides a valuable addition for hydrologic modelling as well as for crop modelling.

Evolution of Root Zone Storage after Land Use Change

NASA Astrophysics Data System (ADS)

Nijzink, R.; Hutton, C.; Capell, R.; Pechlivanidis, I.; Hrachowitz, M.; Savenije, H.

2015-12-01

It has been acknowledged for some time that a coupling exists between vegetation, climate and hydrological processes (e.g. Eagleson, 1982a, Rodriguez-Iturbe,2001 ). Recently, Gao et al.(2014) demonstrated that one of the core parameters of hydrological functioning, the catchment-scale root zone water storage capacity, can be estimated based on climate data alone. It was shown that ecosystems develop root zone storage capacities that allow vegetation to bridge droughts with return periods of about 20 years. As a consequence, assuming that the evaporative demand determines the root zone storage capacity, land use changes, such as deforestation, should have an effect on the development of this capacity . In this study it was tested to which extent deforestation affects root zone storage capacities. To do so, four different hydrological models were calibrated in a moving window approach after deforestation occurred. In this way, model based estimates of the storage capacity in time were obtained. This was compared with short term estimates of root zone storage capacities based on a climate based method similar to Gao et al.(2014). In addition, the equilibrium root zone storage capacity was determined with the total time series of an unaffected control catchment. Preliminary results indicate that models tend to adjust their storage capacity to the values found by the climate based method. This is strong evidence that the root zone storage is determined by the evaporative demand of vegetation. Besides, root zones storage capacities develop towards an equilibrium value where the ecosystem is in balance, further highlighting the evolving, time dynamic character of hydrological systems.

Genomic Regions Influencing Seminal Root Traits in Barley.

PubMed

Robinson, Hannah; Hickey, Lee; Richard, Cecile; Mace, Emma; Kelly, Alison; Borrell, Andrew; Franckowiak, Jerome; Fox, Glen

2016-03-01

Water availability is a major limiting factor for crop production, making drought adaptation and its many component traits a desirable attribute of plant cultivars. Previous studies in cereal crops indicate that root traits expressed at early plant developmental stages, such as seminal root angle and root number, are associated with water extraction at different depths. Here, we conducted the first study to map seminal root traits in barley ( L.). Using a recently developed high-throughput phenotyping method, a panel of 30 barley genotypes and a doubled-haploid (DH) population (ND24260 × 'Flagship') comprising 330 lines genotyped with diversity array technology (DArT) markers were evaluated for seminal root angle (deviation from vertical) and root number under controlled environmental conditions. A high degree of phenotypic variation was observed in the panel of 30 genotypes: 13.5 to 82.2 and 3.6 to 6.9° for root angle and root number, respectively. A similar range was observed in the DH population: 16.4 to 70.5 and 3.6 to 6.5° for root angle and number, respectively. Seven quantitative trait loci (QTL) for seminal root traits (root angle, two QTL; root number, five QTL) were detected in the DH population. A major QTL influencing both root angle and root number (/) was positioned on chromosome 5HL. Across-species analysis identified 10 common genes underlying root trait QTL in barley, wheat ( L.), and sorghum [ (L.) Moench]. Here, we provide insight into seminal root phenotypes and provide a first look at the genetics controlling these traits in barley. Copyright © 2016 Crop Science Society of America.

Monitoring and Characterizing Crop Root Systems Using Electrical Impedance Tomography (EIT)

NASA Astrophysics Data System (ADS)

Weigand, M.; Kemna, A.

2016-12-01

A better understanding of root-soil interactions and associated processes is essential to achieve progress in crop breeding and management, prompting the need for high-resolution and non-destructive characterization methods. Such methods are still lacking, in particular for characterizing root growth and function in the field. A promising technique in this respect is electrical impedance tomography (EIT), which provides images of the low-frequency electrical conduction and polarization properties and thus can be used to investigate polarization processes occurring within and in the direct vicinity of roots under the influence of an external alternating electric field. This approach takes advantage of the well-known polarization properties associated with electrical double layers forming at membranes of cells and cell clusters. However, upscaling these processes to the scale of an impedance, or complex conductivity, spectrum of the whole root system is not trivial given the lack of electrical root models, the complexity of root systems, and the occurrence of additional larger-scale, ion-selective, and therefore polarizable, structures such as the Casparian strip. We here present results from several EIT laboratory studies on rhizotrons with crop root systems in aqueous solutions. Based on optimized experimental and data analysis procedures, enabling the imaging of the weak signals encountered in our studies, we found systematic spatial and temporal changes of both the magnitude and the shape of the spectral polarization signatures during nutrient deprivation and in response to the decapitation of plants. Consistent, but relatively weak, spectral impedance changes were also observed over diurnal cycles. Our results provide evidence for the capability of EIT to non-invasively image and monitor root systems at the rhizotron scale. They further suggest that EIT is a promising tool for imaging, characterizing, and monitoring crop roots at the field scale.

Cell Wall Pectin and its Methyl-esterification in Transition Zone Determine Al Resistance in Cultivars of Pea (Pisum sativum)

PubMed Central

Li, Xuewen; Li, Yalin; Qu, Mei; Xiao, Hongdong; Feng, Yingming; Liu, Jiayou; Wu, Lishu; Yu, Min

2016-01-01

The initial response of plants to aluminum (Al) is the inhibition of root elongation, while the transition zone is the most Al sensitive zone in the root apex, which may sense the presence of Al and regulate the responses of root to Al toxicity. In the present study, the effect of Al treatment (30 μM, 24 h) on root growth, Al accumulation, and properties of cell wall of two pea (Pisum sativum L.) cultivars, cv Onward (Al-resistant) and cv Sima (Al-sensitive), were studied to disclose whether the response of root transition zone to Al toxicity determines Al resistance in pea cultivars. The lower relative root elongation (RRE) and higher Al content were founded in cv Sima compared with cv Onward, which were related to Al-induced the increase of pectin in root segments of both cultivars. The increase of pectin is more prominent in Al-sensitive cultivar than in Al-resistant cultivar. Aluminum toxicity also induced the increase of pectin methylesterases (PME), which is 2.2 times in root transition zone in Al-sensitive cv Sima to that of Al resistant cv Onward, thus led to higher demethylesterified pectin content in root transition zone of Al-sensitive cv Sima. The higher demethylesterified pectin content in root transition zone resulted in more Al accumulation in the cell wall and cytosol in Al-sensitive cv Sima. Our results provide evidence that the increase of pectin content and PME activity under Al toxicity cooperates to determine Al sensitivity in root transition zone that confers Al resistance in cultivars of pea (Pisum sativum). PMID:26870060

Nematodes in Dryland Field Crops in the Semiarid Pacific Northwest United States

PubMed Central

Smiley, Richard W.; Merrifield, Kathy; Patterson, Lisa-Marie; Whittaker, Ruth G.; Gourlie, Jennifer A.; Easley, Sandra A.

2004-01-01

Soils and roots of field crops in low-rainfall regions of the Pacific Northwest were surveyed for populations of plantparasitic and non-plant-parasitic nematodes. Lesion nematodes (Pratylenchus species) were recovered from 123 of 130 non-irrigated and 18 of 18 irrigated fields. Pratylenchus neglectus was more prevalent than P. thornei, but mixed populations were common. Population densities in soil were affected by crop frequency and rotation but not by tillage or soil type (P < 0.05). Many fields (25%) cropped more frequently than 2 of 4 years had potentially damaging populations of lesion nematodes. Pratylenchus neglectus density in winter wheat roots was inversely correlated with grain yield (r2 = 0.64, P = 0.002), providing the first field-derived evidence that Pratylenchus is economically important in Pacific Northwest dryland field crops. Stunt nematodes (Tylenchorhynchus clarus and Geocenamus brevidens) were detected in 35% of fields and were occasionally present in high numbers. Few fields were infested with pin (Paratylenchus species) and root-knot (Meloidogyne naasi and M. chitwoodi) nematodes. Nematodes detected previously but not during this survey included cereal cyst (Heterodera avenae), dagger (Xiphinema species), and root-gall (Subanguina radicicola) nematodes. PMID:19262788

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lucash, M.S.; Farnsworth, B.; Winner, W.E.

This study tests the potential for interactions between root-zone temperature and CO{sub 2} for plants which co-occur in a habitat where root-zone temperature fluctuate throughout the day. Controlled environment studies were conducted to expose desert plants to combinations of low or high root zone temperatures and low or high CO{sub 2}. Artemisia tridentata, Sitanion hystrix, and Stipa thurberiana were chosen for study to represent eastern Oregon plants that differ in their life history strategies. Seeds were planted in pots containing native soils and were grown in environmentally controlled growth chambers for three months. Growth treatments were either ambient (380 ppm)more » or high (580 ppm) CO{sub 2} concentration and high (18{degrees}C) or low (13{degrees} C) root-zone temperature. A. tridentata (a perennial shrub) was relatively unresponsive to treatments. Growth of S. hystrix and S. thurberiana (both C{sub 3} grasses) was stimulated by root-zone warming at both ambient and elevated CO{sub 2} levels. CO{sub 2} stimulated growth occurred for both grass species at low root-zone temperatures but only for S. thurberiana at high root-zone temperatures. Biomass increases from elevated CO{sub 2} were enhanced by root-zone warming indicating treatment interactions. Leaf-level photosynthesis measurements were consistent across species, but could not explain growth responses to treatments. These studies indicate that grasses may be more responsive to environmental change than co-occurring shrubs.« less

Rhizosphere Microbiomes Modulated by Pre-crops Assisted Plants in Defense Against Plant-Parasitic Nematodes

PubMed Central

Elhady, Ahmed; Adss, Shimaa; Hallmann, Johannes; Heuer, Holger

2018-01-01

Plant-parasitic nematodes cause considerable damage to crop plants. The rhizosphere microbiome can affect invasion and reproductive success of plant-parasitic nematodes, thus affecting plant damage. In this study, we investigated how the transplanted rhizosphere microbiome from different crops affect plant-parasitic nematodes on soybean or tomato, and whether the plant’s own microbiome from the rhizosphere protects it better than the microbiome from fallow soil. Soybean plants growing in sterilized substrate were inoculated with the microbiome extracted from the rhizosphere of soybean, maize, or tomato. Controls were inoculated with extracts from bulk soil, or not inoculated. After the microbiome was established, the root lesion nematode Pratylenchus penetrans was added. Root invasion of P. penetrans was significantly reduced on soybean plants inoculated with the microbiome from maize or soybean compared to tomato or bulk soil, or the uninoculated control. In the analogous experiment with tomato plants inoculated with either P. penetrans or the root knot nematode Meloidogyne incognita, the rhizosphere microbiomes of maize and tomato reduced root invasion by P. penetrans and M. incognita compared to microbiomes from soybean or bulk soil. Reproduction of M. incognita on tomato followed the same trend, and it was best suppressed by the tomato rhizosphere microbiome. In split-root experiments with soybean and tomato plants, a systemic effect of the inoculated rhizosphere microbiomes on root invasion of P. penetrans was shown. Furthermore, some transplanted microbiomes slightly enhanced plant growth compared to uninoculated plants. The microbiomes from maize rhizosphere and bulk soil increased the fresh weights of roots and shoots of soybean plants, and microbiomes from soybean rhizosphere and bulk soil increased the fresh weights of roots and shoots of tomato plants. Nematode invasion did not affect plant growth in these short-term experiments. In conclusion, this study highlights the importance of the rhizosphere microbiome in protecting crops against plant-parasitic nematodes. An effect of pre-crops on the rhizosphere microbiome might be harnessed to enhance the resistance of crops towards plant-parasitic nematodes. However, nematode-suppressive effects of a particular microbiome may not necessarily coincide with improvement of plant growth in the absence of plant-parasitic nematodes. PMID:29915566

Effect of Continuous Cropping Generations on Each Component Biomass of Poplar Seedlings during Different Growth Periods

PubMed Central

Xia, Jiangbao; Zhang, Shuyong; Li, Tian; Liu, Xia; Zhang, Ronghua; Zhang, Guangcan

2014-01-01

In order to investigate the change rules and response characteristics of growth status on each component of poplar seedling followed by continuous cropping generations and growth period, we clear the biomass distribution pattern of poplar seedling, adapt continuous cropping, and provide theoretical foundation and technical reference on cultivation management of poplar seedling, the first generation, second generation, and third generation continuous cropping poplar seedlings were taken as study objects, and the whole poplar seedling was harvested to measure and analyze the change of each component biomass on different growth period poplar leaves, newly emerging branches, trunks and root system, and so forth. The results showed that the whole biomass of poplar seedling decreased significantly with the leaf area and its ratio increased, and the growth was inhibited obviously. The biomass aboveground was more than that underground. The ratios of leaf biomass and newly emerging branches biomass of first continuous cropping poplar seedling were relatively high. With the continuous cropping generations and growth cycle increasing, poplar seedling had a growth strategy to improve the ratio of root-shoot and root-leaf to adapt the limited soil nutrient of continuous cropping. PMID:25401150

Is rhizosphere remediation sufficient for sustainable revegetation of mine tailings?

PubMed Central

Huang, Longbin; Baumgartl, Thomas; Mulligan, David

2012-01-01

Background Revegetation of mine tailings (fine-grained waste material) starts with the reconstruction of root zones, consisting of a rhizosphere horizon (mostly topsoil and/or amended tailings) and the support horizon beneath (i.e. equivalent to subsoil – mostly tailings), which must be physically and hydro-geochemically stable. This review aims to discuss key processes involved in the development of functional root zones within the context of direct revegetation of tailings and introduces a conceptual process of rehabilitating structure and function in the root zones based on a state transition model. Scope Field studies on the revegetation of tailings (from processing base metal ore and bauxite residues) are reviewed. Particular focus is given to tailings' properties that limit remediation effectiveness. Aspects of root zone reconstruction and vegetation responses are also discussed. Conclusions When reconstructing a root zone system, it is critical to restore physical structure and hydraulic functions across the whole root zone system. Only effective and holistically restored systems can control hydro-geochemical mobility of acutely and chronically toxic factors from the underlying horizon and maintain hydro-geochemical stability in the rhizosphere. Thereafter, soil biological capacity and ecological linkages (i.e. carbon and nutrient cycling) may be rehabilitated to integrate the root zones with revegetated plant communities into sustainable plant ecosystems. A conceptual framework of system transitions between the critical states of root zone development has been proposed. This will illustrate the rehabilitation process in root zone reconstruction and development for direct revegetation with sustainable plant communities. Sustainable phytostabilization of tailings requires the systematic consideration of hydro-geochemical interactions between the rhizosphere and the underlying supporting horizon. It further requires effective remediation strategies to develop hydro-geochemically stable and biologically functional root zones, which can facilitate the recovery of the microbial community and ecological linkages with revegetated plant communities. PMID:22648878

Potential of Leguminous Cover Crops in Management of a Mixed Population of Root-knot Nematodes (Meloidogyne spp.)

PubMed Central

Osei, Kingsley; Gowen, Simon R.; Pembroke, Barbara; Brandenburg, Rick L.; Jordan, David L.

2010-01-01

Root-knot nematode is an important pest in agricultural production worldwide. Crop rotation is the only management strategy in some production systems, especially for resource poor farmers in developing countries. A series of experiments was conducted in the laboratory with several leguminous cover crops to investigate their potential for managing a mixture of root-knot nematodes (Meloidogyne arenaria, M. incognita, M. javanica). The root-knot nematode mixture failed to multiply on Mucuna pruriens and Crotalaria spectabilis but on Dolichos lablab the population increased more than 2- fold when inoculated with 500 and 1,000 nematodes per plant. There was no root-galling on M. pruriens and C. spectabilis but the gall rating was noted on D. lablab. Greater mortality of juvenile root-knot nematodes occurred when exposed to eluants of roots and leaves of leguminous crops than those of tomato; 48.7% of juveniles died after 72 h exposure to root eluant of C. spectabilis. The leaf eluant of D. lablab was toxic to nematodes but the root eluant was not. Thus, different parts of a botanical contain different active ingredients or different concentrations of the same active ingredient. The numbers of root-knot nematode eggs that hatched in root exudates of M. pruriens and C. spectabilis were significantly lower (20% and 26%) than in distilled water, tomato and P. vulgaris root exudates (83%, 72% and 89%) respectively. Tomato lacks nematotoxic compounds found in M. pruriens and C. spectabilis. Three months after inoculating plants with 1,000 root-knot nematode juveniles the populations in pots with M. pruriens, C. spectabilis and C. retusa had been reduced by approximately 79%, 85% and 86% respectively; compared with an increase of 262% nematodes in pots with Phaseolus vulgaris. There was significant reduction of 90% nematodes in fallow pots with no growing plant. The results from this study demonstrate that some leguminous species contain compounds that either kill root-knot nematodes or interfere with hatching and affect their capacity to invade and develop within their roots. M. pruriens, C. spectabilis and C. retusa could be used with effect to decrease a mixed field populations of root-knot nematodes. PMID:22736854

The evolution of root-zone moisture capacities after deforestation: a step towards hydrological predictions under change?

NASA Astrophysics Data System (ADS)

Nijzink, Remko; Hutton, Christopher; Pechlivanidis, Ilias; Capell, René; Arheimer, Berit; Freer, Jim; Han, Dawei; Wagener, Thorsten; McGuire, Kevin; Savenije, Hubert; Hrachowitz, Markus

2016-12-01

The core component of many hydrological systems, the moisture storage capacity available to vegetation, is impossible to observe directly at the catchment scale and is typically treated as a calibration parameter or obtained from a priori available soil characteristics combined with estimates of rooting depth. Often this parameter is considered to remain constant in time. Using long-term data (30-40 years) from three experimental catchments that underwent significant land cover change, we tested the hypotheses that: (1) the root-zone storage capacity significantly changes after deforestation, (2) changes in the root-zone storage capacity can to a large extent explain post-treatment changes to the hydrological regimes and that (3) a time-dynamic formulation of the root-zone storage can improve the performance of a hydrological model.A recently introduced method to estimate catchment-scale root-zone storage capacities based on climate data (i.e. observed rainfall and an estimate of transpiration) was used to reproduce the temporal evolution of root-zone storage capacity under change. Briefly, the maximum deficit that arises from the difference between cumulative daily precipitation and transpiration can be considered as a proxy for root-zone storage capacity. This value was compared to the value obtained from four different conceptual hydrological models that were calibrated for consecutive 2-year windows.It was found that water-balance-derived root-zone storage capacities were similar to the values obtained from calibration of the hydrological models. A sharp decline in root-zone storage capacity was observed after deforestation, followed by a gradual recovery, for two of the three catchments. Trend analysis suggested hydrological recovery periods between 5 and 13 years after deforestation. In a proof-of-concept analysis, one of the hydrological models was adapted to allow dynamically changing root-zone storage capacities, following the observed changes due to deforestation. Although the overall performance of the modified model did not considerably change, in 51 % of all the evaluated hydrological signatures, considering all three catchments, improvements were observed when adding a time-variant representation of the root-zone storage to the model.In summary, it is shown that root-zone moisture storage capacities can be highly affected by deforestation and climatic influences and that a simple method exclusively based on climate data can not only provide robust, catchment-scale estimates of this critical parameter, but also reflect its time-dynamic behaviour after deforestation.

Impact of switching crop type on water and solute fluxes in deep vadose zone

NASA Astrophysics Data System (ADS)

Turkeltaub, T.; Kurtzman, D.; Russak, E. E.; Dahan, O.

2015-12-01

Switching crop type and consequently changing irrigation and fertilization regimes lead to alterations in deep percolation and solute concentrations of pore water. Herein, observations from the deep vadose zone and model simulations demonstrate the changes in water, chloride, and nitrate fluxes under a commercial greenhouse following the change from tomato to lettuce cropping. The site, located above a phreatic aquifer, was monitored for 5 years. A vadose-zone monitoring system was implemented under the greenhouse and provided continuous data on both temporal variations in water content and chemical composition of the pore water at multiple depths in the deep vadose zone (up to 20 m). Following crop switching, a significant reduction in chloride concentration and dramatic increase in nitrate were observed across the unsaturated zone. The changes in chemical composition of the vadose-zone pore water appeared as sequential breakthroughs across the unsaturated zone, initiating at land surface and propagating down toward the water table. Today, 3 years after switching the crops, penetration of the impact exceeds 10 m depth. Variations in the isotopic composition of nitrate (18O and 15N) in water samples obtained from the entire vadose zone clearly support a fast leaching process and mobilization of solutes across the unsaturated zone following the change in crop type. Water flow and chloride transport models were calibrated to observations acquired during an enhanced infiltration experiment. Forward simulation runs were performed with the calibrated models, constrained to tomato and lettuce cultivation regimes as surface boundary conditions. Predicted chloride and nitrate concentrations were in agreement with the observed concentrations. The simulated water drainage and nitrogen leaching implied that the observed changes are an outcome of recommended agricultural management practices.

Can diversity in root architecture explain plant water use efficiency? A modeling study

PubMed Central

Tron, Stefania; Bodner, Gernot; Laio, Francesco; Ridolfi, Luca; Leitner, Daniel

2015-01-01

Drought stress is a dominant constraint to crop production. Breeding crops with adapted root systems for effective uptake of water represents a novel strategy to increase crop drought resistance. Due to complex interaction between root traits and high diversity of hydrological conditions, modeling provides important information for trait based selection. In this work we use a root architecture model combined with a soil-hydrological model to analyze whether there is a root system ideotype of general adaptation to drought or water uptake efficiency of root systems is a function of specific hydrological conditions. This was done by modeling transpiration of 48 root architectures in 16 drought scenarios with distinct soil textures, rainfall distributions, and initial soil moisture availability. We find that the efficiency in water uptake of root architecture is strictly dependent on the hydrological scenario. Even dense and deep root systems are not superior in water uptake under all hydrological scenarios. Our results demonstrate that mere architectural description is insufficient to find root systems of optimum functionality. We find that in environments with sufficient rainfall before the growing season, root depth represents the key trait for the exploration of stored water, especially in fine soils. Root density, instead, especially near the soil surface, becomes the most relevant trait for exploiting soil moisture when plant water supply is mainly provided by rainfall events during the root system development. We therefore concluded that trait based root breeding has to consider root systems with specific adaptation to the hydrology of the target environment. PMID:26412932

Can diversity in root architecture explain plant water use efficiency? A modeling study.

PubMed

Tron, Stefania; Bodner, Gernot; Laio, Francesco; Ridolfi, Luca; Leitner, Daniel

2015-09-24

Drought stress is a dominant constraint to crop production. Breeding crops with adapted root systems for effective uptake of water represents a novel strategy to increase crop drought resistance. Due to complex interaction between root traits and high diversity of hydrological conditions, modeling provides important information for trait based selection. In this work we use a root architecture model combined with a soil-hydrological model to analyze whether there is a root system ideotype of general adaptation to drought or water uptake efficiency of root systems is a function of specific hydrological conditions. This was done by modeling transpiration of 48 root architectures in 16 drought scenarios with distinct soil textures, rainfall distributions, and initial soil moisture availability. We find that the efficiency in water uptake of root architecture is strictly dependent on the hydrological scenario. Even dense and deep root systems are not superior in water uptake under all hydrological scenarios. Our results demonstrate that mere architectural description is insufficient to find root systems of optimum functionality. We find that in environments with sufficient rainfall before the growing season, root depth represents the key trait for the exploration of stored water, especially in fine soils. Root density, instead, especially near the soil surface, becomes the most relevant trait for exploiting soil moisture when plant water supply is mainly provided by rainfall events during the root system development. We therefore concluded that trait based root breeding has to consider root systems with specific adaptation to the hydrology of the target environment.

Enhancing phosphorus and zinc acquisition efficiency in rice: a critical review of root traits and their potential utility in rice breeding.

PubMed

Rose, T J; Impa, S M; Rose, M T; Pariasca-Tanaka, J; Mori, A; Heuer, S; Johnson-Beebout, S E; Wissuwa, M

2013-07-01

Rice is the world's most important cereal crop and phosphorus (P) and zinc (Zn) deficiency are major constraints to its production. Where fertilizer is applied to overcome these nutritional constraints it comes at substantial cost to farmers and the efficiency of fertilizer use is low. Breeding crops that are efficient at acquiring P and Zn from native soil reserves or fertilizer sources has been advocated as a cost-effective solution, but would benefit from knowledge of genes and mechanisms that confer enhanced uptake of these nutrients by roots. This review discusses root traits that have been linked to P and Zn uptake in rice, including traits that increase mobilization of P/Zn from soils, increase the volume of soil explored by roots or root surface area to recapture solubilized nutrients, enhance the rate of P/Zn uptake across the root membrane, and whole-plant traits that affect root growth and nutrient capture. In particular, this review focuses on the potential for these traits to be exploited through breeding programmes to produce nutrient-efficient crop cultivars. Few root traits have so far been used successfully in plant breeding for enhanced P and Zn uptake in rice or any other crop. Insufficient genotypic variation for traits or the failure to enhance nutrient uptake under realistic field conditions are likely reasons for the limited success. More emphasis is needed on field studies in mapping populations or association panels to identify those traits and underlying genes that are able to enhance nutrient acquisition beyond the level already present in most cultivars.

Nitrogen Fertilization Effects on Productivity and Nitrogen Loss in Three Grass-Based Perennial Bioenergy Cropping Systems

PubMed Central

Duran, Brianna E. L.; Duncan, David S.; Oates, Lawrence G.; Kucharik, Christopher J.; Jackson, Randall D.

2016-01-01

Nitrogen (N) fertilization can greatly improve plant productivity but needs to be carefully managed to avoid harmful environmental impacts. Nutrient management guidelines aimed at reducing harmful forms of N loss such as nitrous oxide (N2O) emissions and nitrate (NO3-) leaching have been tailored for many cropping systems. The developing bioenergy industry is likely to make use of novel cropping systems, such as polycultures of perennial species, for which we have limited nutrient management experience. We studied how a switchgrass (Panicum virgatum) monoculture, a 5-species native grass mixture and an 18-species restored prairie responded to annual fertilizer applications of 56 kg N ha-1 in a field-scale agronomic trial in south-central Wisconsin over a 2-year period. We observed greater fertilizer-induced N2O emissions and sub-rooting zone NO3- concentrations in the switchgrass monoculture than in either polyculture. Fertilization increased aboveground net primary productivity in the polycultures, but not in the switchgrass monoculture. Switchgrass was generally more productive, while the two polycultures did not differ from each other in productivity or N loss. Our results highlight differences between polycultures and a switchgrass monoculture in responding to N fertilization. PMID:26991790

Nutrient concentrations within and below root zones from applied chicken manure in selected Hawaiian soils.

PubMed

Ahmad, Amjad A; Fares, Ali; Abbas, Farhat; Deenik, Jonathan L

2009-11-01

The objective of this study was to evaluate the effects of chicken manure (CM) application rates on nutrient concentrations within and below the root zone of sweet corn (Zea mays L. subsp. mays) under Hawaiian conditions. The research was conducted in leeward (Poamoho) and windward (Waimanalo) areas of Oahu, Hawaii, where contrasts exist in both climatic and soil conditions. Suction cup were used to collect soil solutions from 30 and 60 cm depths. Soil solutions were collected six times during the growing season at each location and analyzed for different nutrients (N, P, K, Ca, Mg, Na, Fe, Mn, Zn, and Cu), nitrate-nitrogen (NO(3)-N), ammonium-nitrogen (NH(4)-N), electrical conductivity (EC), and pH. Analysis showed that CM rates significantly affected the concentration of macro-nutrients below the root zone at Poamoho and within the root zone at Waimanalo. In general, nutrient concentration increased with the increasing rates of CM application. There was a significant effect of CM on micro-nutrients except below the root zone at Poamoho. CM significantly affected NO(3)-N concentration within the root zone for 15, 60 days after planting (DAP) at Poamoho, and 16, 28 DAP at Waimanalo. The effect was also significant on total nitrogen (N) concentration in the root zone across the two growing seasons at Waimanalo. There was a highly significant correlation between total N and NO(3)-N, and EC within and below the root zone.

Long-distance abscisic acid signalling under different vertical soil moisture gradients depends on bulk root water potential and average soil water content in the root zone.

PubMed

Puértolas, Jaime; Alcobendas, Rosalía; Alarcón, Juan J; Dodd, Ian C

2013-08-01

To determine how root-to-shoot abscisic acid (ABA) signalling is regulated by vertical soil moisture gradients, root ABA concentration ([ABA](root)), the fraction of root water uptake from, and root water potential of different parts of the root zone, along with bulk root water potential, were measured to test various predictive models of root xylem ABA concentration [RX-ABA](sap). Beans (Phaseolus vulgaris L. cv. Nassau) were grown in soil columns and received different irrigation treatments (top and basal watering, and withholding water for varying lengths of time) to induce different vertical soil moisture gradients. Root water uptake was measured at four positions within the column by continuously recording volumetric soil water content (θv). Average θv was inversely related to bulk root water potential (Ψ(root)). In turn, Ψ(root) was correlated with both average [ABA](root) and [RX-ABA](sap). Despite large gradients in θv, [ABA](root) and root water potential was homogenous within the root zone. Consequently, unlike some split-root studies, root water uptake fraction from layers with different soil moisture did not influence xylem sap (ABA). This suggests two different patterns of ABA signalling, depending on how soil moisture heterogeneity is distributed within the root zone, which might have implications for implementing water-saving irrigation techniques. © 2013 John Wiley & Sons Ltd.

Modelling of adaptation processes of crops to water and nitrogen stress

NASA Astrophysics Data System (ADS)

Kovács, Géza J.

In the early 1980s the author published interpretations of his observations on special adaptation processes of crops (“Zichy” experiment). Those days it was not yet possible to include these details into a crop model. The knowledge has grown about the systems of crops and their environment, now it is appropriate to test those hypothesis by systems models. The 4M system model used in this study was developed by RISSAC modelling team lead by the author. 4M is based on CERES model family and the advices of the “father” of CERES, J.T. Ritchie. 4M aims to include a lot of results from Hungarian agricultural research. Some observations of “Zichy” experiment needed explanations but there were shortages of information on some parts of the system in order to test the hypothesis. Observations were as it follows: (1) The growth of above ground maize biomass slowed down in both years after a heavy rainy period. (2) Following the rainy period there was a fast drop of nitrate content in the soil and (3) following this time the water content of soil decreased with a fast rate approaching the wilting point. (4) When maize reacted on the emerging water stress there was a second (and even deeper) slow down of growth of above ground biomass. (5) The consequences of the stormy period was more dramatic in the second year of the experiment (1979), there was 3 t ha -1 loss of biomass and 2.5 t ha -1 loss of grain yield relative to 1978. (6) There was a significant difference in the time of stormy rain: in 1978 it occurred post-anthesis while in 1979 it occurred just prior to anthesis. Hypothesis tested here were as it follows: (1) The cause of observed growth stress reaction was a fast nitrate leaching from the rooted zone. (2) The crops cannot take up all the mineral nitrogen measured in a soil probe, the major limit is the mass flow to the roots controlled by transpiration and nitrogen concentration of soil solution. (3) “Leaching of soil by a flush of rain leads to increased the rate of transpiration in a developed crop stand”. (4) The very well fertilized (“spoiled”) plants had weak root system. In N and water stress the plant changed its carbon distribution to the advantage of root growth, and as a result, the above ground growth slowed down. (5) Pre-anthesis N deficiency had set a limit for later compensation of yield that can be simulated by poor fertilization of grains. New process model components are introduced and tested here as it follows: (1) algorithm for N uptake using the concept of mass flow to the roots controlled by transpiration and nitrogen concentration of soil solution, (2) changes of distribution and redistribution pattern of assimilates to different plant organs influenced by nitrogen and water stress, (3) modification of grain numbers controlled by N stress prior to anthesis. Results showed that hypotheses 1 and 3 was false, hypothesis 2 is true but needs modifications taking the behavior of NH 4 into consideration, hypotheses 4 and 5 are true but more evidences are needed.

Global root zone storage capacity from satellite-based evaporation

NASA Astrophysics Data System (ADS)

Wang-Erlandsson, Lan; Bastiaanssen, Wim G. M.; Gao, Hongkai; Jägermeyr, Jonas; Senay, Gabriel B.; van Dijk, Albert I. J. M.; Guerschman, Juan P.; Keys, Patrick W.; Gordon, Line J.; Savenije, Hubert H. G.

2016-04-01

This study presents an "Earth observation-based" method for estimating root zone storage capacity - a critical, yet uncertain parameter in hydrological and land surface modelling. By assuming that vegetation optimises its root zone storage capacity to bridge critical dry periods, we were able to use state-of-the-art satellite-based evaporation data computed with independent energy balance equations to derive gridded root zone storage capacity at global scale. This approach does not require soil or vegetation information, is model independent, and is in principle scale independent. In contrast to a traditional look-up table approach, our method captures the variability in root zone storage capacity within land cover types, including in rainforests where direct measurements of root depths otherwise are scarce. Implementing the estimated root zone storage capacity in the global hydrological model STEAM (Simple Terrestrial Evaporation to Atmosphere Model) improved evaporation simulation overall, and in particular during the least evaporating months in sub-humid to humid regions with moderate to high seasonality. Our results suggest that several forest types are able to create a large storage to buffer for severe droughts (with a very long return period), in contrast to, for example, savannahs and woody savannahs (medium length return period), as well as grasslands, shrublands, and croplands (very short return period). The presented method to estimate root zone storage capacity eliminates the need for poor resolution soil and rooting depth data that form a limitation for achieving progress in the global land surface modelling community.

Productivity and nutrient cycling in bioenergy cropping systems

NASA Astrophysics Data System (ADS)

Heggenstaller, Andrew Howard

One of the greatest obstacles confronting large-scale biomass production for energy applications is the development of cropping systems that balance the need for increased productive capacity with the maintenance of other critical ecosystem functions including nutrient cycling and retention. To address questions of productivity and nutrient dynamics in bioenergy cropping systems, we conducted two sets of field experiments during 2005-2007, investigating annual and perennial cropping systems designed to generate biomass energy feedstocks. In the first experiment we evaluated productivity and crop and soil nutrient dynamics in three prototypical bioenergy double-crop systems, and in a conventionally managed sole-crop corn system. Double-cropping systems included fall-seeded forage triticale (x Triticosecale Wittmack), succeeded by one of three summer-adapted crops: corn (Zea mays L.), sorghum-sudangrass [Sorghum bicolor (L.) Moench], or sunn hemp (Crotalaria juncea L.). Total dry matter production was greater for triticale/corn and triticale/sorghum-sudangrass compared to sole-crop corn. Functional growth analysis revealed that photosynthetic duration was more important than photosynthetic efficiency in determining biomass productivity of sole-crop corn and double-crop triticale/corn, and that greater yield in the tiritcale/corn system was the outcome of photosynthesis occurring over an extended duration. Increased growth duration in double-crop systems was also associated with reductions in potentially leachable soil nitrogen relative to sole-crop corn. However, nutrient removal in harvested biomass was also greater in the double-crop systems, indicating that over the long-term, double-cropping would mandate increased fertilizer inputs. In a second experiment we assessed the effects of N fertilization on biomass and nutrient partitioning between aboveground and belowground crop components, and on carbon storage by four perennial, warm-season grasses: big bluestem (Andropogon geradii Vitman), switchgrass (Panicum virgatum L.), indiangrass [ Sorghastrum nutans (L.) Nash], and eastern gamagrass (Tripsacum dactyloides L.). Generally, the optimum rate of fertilization for biomass yield by the grasses was 140 kg N ha-1. Nitrogen inputs also had pronounced but grass-specific effects on biomass and nutrient partitioning, and on carbon storage. For big bluestem and switchgrass, 140 kg N ha -1. maximized root biomass, favored allocation of nutrients to roots over shoots, and led to net increases in carbon storage over the study duration. In contrast, for indiangrass and eastern gamagrass, root biomass and root nutrient allocation were generally adversely affected by N fertilization and carbon storage increased only with 0 or 65 kg N ha-1. For all grasses, 220 kg N ha -1 tended to shift allocation of nutrients to shoots over roots and resulted in no net increase in carbon storage. Optimal nitrogen management strategies for perennial, warm-season grass energy crops should take into consideration the effects of N on biomass yield as well as factors such as nutrient and carbon balance that will also impact economic feasibility and environmental sustainability.

The High Level of Aluminum Resistance in Signalgrass Is Not Associated with Known Mechanisms of External Aluminum Detoxification in Root Apices1

PubMed Central

Wenzl, Peter; Patiño, Gloria M.; Chaves, Alba L.; Mayer, Jorge E.; Rao, Idupulapati M.

2001-01-01

Al resistance of signalgrass (Brachiaria decumbens Stapf cv Basilisk), a widely sown tropical forage grass, is outstanding compared with the closely related ruzigrass (Brachiaria ruziziensis Germain and Evrard cv Common) and Al-resistant genotypes of graminaceous crops such as wheat, triticale, and maize. Secretion of organic acids and phosphate by root apices and alkalinization of the apical rhizosphere are commonly believed to be important mechanisms of Al resistance. However, root apices of signalgrass secreted only moderately larger quantities of organic acids than did those of ruzigrass, and efflux from signalgrass apices was three to 30 times smaller than from apices of Al-resistant genotypes of buckwheat, maize, and wheat (all much more sensitive to Al than signalgrass). In the presence, but not absence, of Al, root apices of signalgrass alkalinized the rhizosphere more than did those of ruzigrass. The latter was associated with a shortening of the alkalinizing zone in Al-intoxicated apices of ruzigrass, indicating that differences in alkalinizing power were a consequence, not a cause of, differential Al resistance. These data indicate that the main mechanism of Al resistance in signalgrass does not involve external detoxification of Al. Therefore, highly effective resistance mechanisms based on different physiological strategies appear to operate in this species. PMID:11244126

Effects of Rainfall-Induced Topsoil Structure Changes on Root-Zone Moisture Regime during the Dry Period

NASA Astrophysics Data System (ADS)

Wang, Feng; Chen, Jiazhou; Lin, Lirong

2018-01-01

Rainfall erosion and subsequent intermittent drought are serious barriers for agricultural production in the subtropical red soil region of China. Although it is widely recognized that rainfall-induced soil structure degradation reduced soil water storage and water-holding capacity, the effects of variation of the rainfall-induced topsoil structure on the subsequent soil water regime during the dry period is still rarely considered. The objective of this study was to ascertain the way of rainfall-induced topsoil structure changes on the subsequent soil water regime during the dry period. In a three-year-long experiment, six practices (CK, only crop; SM, straw mulching; PAM, polyacrylamide surface application; B, contour Bahia-grass strip; SPAM, straw mulching and polyacrylamide surface application; and BPAM, contour Bahia-grass strip and polyacrylamide surface application) were conducted at an 8° farmland with planting summer maize resulting in different topsoil structure and root-zone moisture, to establish and reveal the quantitatively relationship between the factors of topsoil structure and soil drought. Rainfall erosion significantly increased the soil crust coverage, and decreased the WSA 0.25, 0-30 mm soil porosity and mean pore size. There was no significant difference during the raining stage of root-zone water storage between CK and other practices. An index of soil drought intensity ( I) and degree ( D) was established using soil water loss rate and soil drought severity. The larger value of I means a higher rate of water loss. The larger value of D means more severe drought. During the dry period, I and D were significantly higher in CK than in other practices. I and D had significantly positively correlation with the crust size and crust coverage, and negatively with WSA 0.25, 15-30 mm soil porosity and mean pore size. Among of soil structure factors, the soil porosity had the largest effect on I and D. The rainfall-induced topsoil structure changes greatly deteriorated the root-zone regime during the dry period mainly due to significant increasing soil water loss but little improving the raining stage of soil water storage. Straw mulching had greater effects than other practices in alleviating rainfall-induced erosion and intermittent drought, and could be a better strategy applied for this region.

The Development of RoBuST: An integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae

USDA-ARS?s Scientific Manuscript database

Root and bulb vegetables (RBV) include carrots, celeriac, parsnips (Apiaceae), onions, garlic, and leek (Alliaceae) – food crops that are grown globally and consumed worldwide. Few data analysis platforms are currently available where data collection, annotation and integration initiatives are focus...

Resistant Citrullus lanatus var. citroides Rootstocks for Managing Root-knot Nematodes in Grafted Watermelon

USDA-ARS?s Scientific Manuscript database

Southern root-knot nematode (RKN), Meloidogyne incognita, is an important re-emerging pest of watermelon. Several factors have contributed to re-emergence of RKN including: 1) ban of methyl bromide for soil fumigation; 2) reduced land area for crop rotation; and 3) continuous cropping of cucurbits u...

The Value of SMAP Soil Moisture Observations For Agricultural Applications

NASA Astrophysics Data System (ADS)

Mladenova, I. E.; Bolten, J. D.; Crow, W.; Reynolds, C. A.

2017-12-01

Knowledge of the amount of soil moisture (SM) in the root zone (RZ) is critical source of information for crop analysts and agricultural agencies as it controls crop development and crop condition changes and can largely impact end-of-season yield. Foreign Agricultural Services (FAS), a subdivision of U.S. Department of Agriculture (USDA) that is in charge with providing information on current and expected global crop supply and demand estimates, has been relying on RZSM estimates generated by the modified two-layer Palmer model, which has been enhanced to allow the assimilation of satellite-based soil moisture data. Generally the accuracy of model-based soil moisture estimates is dependent on the precision of the forcing data that drives the model and more specifically, the accuracy of the precipitation data. Data assimilation gives the opportunity to correct for such precipitation-related inaccuracies and enhance the quality of the model estimates. Here we demonstrate the value of ingesting passive-based soil moisture observations derived from the Soil Moisture Active Passive (SMAP) mission. In terms of agriculture, general understanding is that the change in soil moisture conditions precede the change in vegetation status, suggesting that soil moisture can be used as an early indicator of expected crop conditions. Therefore, we assess the accuracy of the SMAP enhanced Palmer model by examining the lag rank cross-correlation coefficient between the model generated soil moisture observations and the Normalized Difference Vegetation Index (NDVI).

Comparison of measured changes in seasonal soil water content by rainfed maize-bean intercrop and component cropping systems in a semi-arid region of southern Africa

NASA Astrophysics Data System (ADS)

Ogindo, H. O.; Walker, S.

Seasonal water content fluctuation within the effective root zone was monitored during the growing season for a maize-bean intercrop (IMB), sole maize (SM) and sole bean (SB) in Free State Province, Republic of South Africa. Comparisons were undertaken for progressive depths of extraction 0-300 mm; 300-600 mm and 600-900 mm respectively. These enabled the understanding of water extraction behavior of the cropping systems within the different soil layers including the topsoil surface normally influenced by soil surface evaporation. Additive intercrops have been known to conserve water, largely due to the early high leaf area index and the higher total leaf area. In this study, the combined effect of the intercrop components seemed to lower the total water demand by the intercrop compared to the sole crops. During the two seasons (2000/2001 and 2001/2002) the drained upper limit (DUL) and crop lower limits (CLL) were determined. The maize-bean intercrop, sole maize and sole bean had CLL of 141 mm/m, 149 mm/m and 159 mm/m respectively. The DUL was 262 mm/m for the site and therefore the potential plant extractable soil water for the cropping systems were: 121 mm/m (IMB); 114 mm/m (SM) and 103 mm/m (SB). Overall, the intercrop did not have significantly different total soil water extraction during both seasons, although it was additive, showing that it had higher water to biomass conversion.

Major Crop Species Show Differential Balance between Root Morphological and Physiological Responses to Variable Phosphorus Supply

PubMed Central

Lyu, Yang; Tang, Hongliang; Li, Haigang; Zhang, Fusuo; Rengel, Zed; Whalley, William R.; Shen, Jianbo

2016-01-01

The relationship between root morphological and physiological responses to variable P supply in different plant species is poorly understood. We compared root morphological and physiological responses to P supply in seven crop species (Zea mays, Triticum aestivum, Brassica napus, Lupinus albus, Glycine max, Vicia faba, Cicer arietinum) treated with or without 100 mg P kg-1 in two soils (acidic and calcareous). Phosphorus deficiency decreased root length more in fibrous root species (Zea mays, Triticum aestivum, Brassica napus) than legumes. Zea mays and Triticum aestivum had higher root/shoot biomass ratio and Brassica napus had higher specific root length compared to legumes, whereas legumes (except soybean) had higher carboxylate exudation than fibrous root species. Lupinus albus exhibited the highest P-acquisition efficiency due to high exudation of carboxylates and acid phosphatases. Lupinus albus and Cicer arietinum depended mostly on root exudation (i.e., physiological response) to enhance P acquisition, whereas Zea mays, Triticum aestivum and Brassica napus had higher root morphology dependence, with Glycine max and Vicia faba in between. Principal component analysis using six morphological and six physiological responses identified root size and diameter as the most important morphological traits, whereas important physiological responses included carboxylate exudation, and P-acquisition and P-utilization efficiency followed by rhizosphere soil pH and acid phosphatase activity. In conclusion, plant species can be grouped on the basis of their response to soil P being primarily via root architectural or exudation plasticity, suggesting a potential benefit of crop-specific root-trait-based management to cope with variable soil P supply in sustainable grain production. PMID:28066491

Is it working? A look at the changing nutrient practices in Oregon's Southern Willamette Valley Groundwater Management Area

NASA Astrophysics Data System (ADS)

Pearlstein, S.; Compton, J.; Eldridge, A.; Henning, A.; Selker, J. S.; Brooks, J. R.; Schmitz, D.

2016-12-01

Groundwater nitrate contamination affects thousands of households in the southern Willamette Valley and many more across the Pacific Northwest. The southern Willamette Valley Groundwater Management Area (SWV GWMA) was established in 2004 due to nitrate levels in the groundwater exceeding the human health standard of 10 mg nitrate-N L-1. Much of the nitrogen inputs to the GWMA comes from agricultural nitrogen use, and thus efforts to reduce N inputs to groundwater are focused upon improving N management. Previous work in the 1990s in the Willamette Valley by researchers at Oregon State University determined the importance of cover crops and irrigation practices and made recommendations to the local farm community for reducing nitrogen (N) leaching. We are currently re-sampling many of the same fields studied by OSU to examine the influence of current crops and nutrient management practices on nitrate leaching below the rooting zone. This study represents important crops currently grown in the GWMA and includes four grass fields, three vegetable row-crop fields, two peppermint and wheat fields, and one each of hazelnuts and blueberries. New nutrient management practices include slow release fertilizers and precision agriculture approaches in some of the fields. Results from the first two years of sampling show nitrate leaching is lower in some crops like row crops grown for seed and higher in others like perennial rye grass seed when compared to the 1990s data. We will use field-level N input-output balances in order to determine the N use efficiency and compare this across crops and over time. The goal of this project is to provide information and tools that will help farmers, managers and conservation groups quantify the water quality benefits of management practices they are conducting or funding.

Soil-plant water status and wine quality: the case study of Aglianico wine (the ZOViSA project)

NASA Astrophysics Data System (ADS)

Bonfante, Antonello; Manna, Piero; Albrizio, Rossella; Basile, Angelo; Agrillo, Antonietta; De Mascellis, Roberto; Caputo, Pellegrina; Delle Cave, Aniello; Gambuti, Angelita; Giorio, Pasquale; Guida, Gianpiero; Minieri, Luciana; Moio, Luigi; Orefice, Nadia; Terribile, Fabio

2014-05-01

The terroir analysis, aiming to achieve a better use of environmental features with respect to plant requirement and wine production, needs to be strongly rooted on hydropedology. In fact, the relations between wine quality and soil moisture regime during the cropping season is well established. The ZOViSA Project (Viticultural zoning at farm scale) tests a new physically oriented approach to terroir analysis based on the relations between the soil-plant water status and wine quality. The project is conducted in southern Italy in the farm Quintodecimo of Mirabella Eclano (AV) located in the Campania region, devoted to quality Aglianico red wine production (DOC). The soil spatial distribution of study area (about 3 ha) was recognized by classical soil survey and geophysics scan by EM38DD; then the soil-plant water status was monitored for three years in two experimental plots from two different soils (Cambisol and Calcisol). Daily climate variables (temperature, solar radiation, rainfall, wind), daily soil water variables (through TDR probes and tensiometers), crop development (biometric and physiological parameters), and grape must and wine quality were monitored. The agro-hydrological model SWAP was calibrated and applied in the two experimental plots to estimate soil-plant water status in different crop phenological stages. The effects of crop water status on crop response and wine quality was evaluated in two different pedo-systems, comparing the crop water stress index with both: crop physiological measurements (leaf gas exchange, leaf water potential, chlorophyll content, LAI measurement), grape bunches measurements (berry weight, sugar content, titratable acidity, etc.) and wine quality (aromatic response). Finally a "spatial application" of the model was carried out and different terroirs defined.

Modeling and assessing field irrigation water use in a canal system of Hetao, upper Yellow River basin: Application to maize, sunflower and watermelon

NASA Astrophysics Data System (ADS)

Ren, Dongyang; Xu, Xu; Hao, Yuanyuan; Huang, Guanhua

2016-01-01

Water saving in irrigation is a key issue in the upper Yellow River basin. Excessive irrigation leads to water waste, water table rising and increased salinity. Land fragmentation associated with a large dispersion of crops adds to the agro-hydrological complexity of the irrigation system. The model HYDRUS-1D, coupled with the FAO-56 dual crop coefficient approach (dualKc), was applied to simulate the water and salt movement processes. Field experiments were conducted for maize, sunflower and watermelon crops in the command area of a typical irrigation canal system in Hetao Irrigation District during 2012 and 2013. The model was calibrated and validated in three crop fields using two-year experimental data. Simulations of soil moisture, salinity concentration and crop yield fitted well with the observations. The irrigation water use was then evaluated and results showed that large amounts of irrigation water percolated due to over-irrigation but their reuse through capillary rise was also quite large. That reuse was facilitated by the dispersion of crops throughout largely fragmented field, thus with fields reusing water percolated from nearby areas due to the rapid lateral migration of groundwater. Beneficial water use could be improved when taking this aspect into account, which was not considered in previous researches. The non-beneficial evaporation and salt accumulation into the root zone were found to significantly increase during non-growth periods due to the shallow water tables. It could be concluded that when applying water saving measures, close attention should be paid to cropping pattern distribution and groundwater control in association with irrigation scheduling and technique improvement.

[Effects of tillage practices on root spatial distribution and yield of spring wheat and pea in the dry land farming areas of central Gansu, China].

PubMed

Zhang, Ming Jun; Li, Ling Ling; Xie, Jun Hong; Peng, Zheng Kai; Ren, Jin Hu

2017-12-01

A field experiment was conducted to explore the mechanism of cultivation measures in affecting crop yield by investigating root distribution in spring wheat-pea rotation based on a long-term conservation tillage practices in a farming region of Gansu. The results showed that with the develo-pment of growth period, the total root length, root surface area of spring wheat and pea showed a consistent trend of increase after initial decrease and reached the maximum at flowering stage. Higher root distribution was found in the 0-10 cm soil layer at seedling and 10-30 cm soil layer at flowering and maturity stages in spring wheat, while in the field pea, higher root distribution was found in the 0-10 cm soil layer at seedling and maturity, and in the 10-30 cm soil layer at flowering stages. No tillage with straw mulching and plastic mulching increased the root length and root surface area. Compared with conventional tillage in spring wheat and field pea, root length increased by 35.9% to 92.6%, and root surface area increased by 43.2% to 162.4%, respectively. No tillage with straw mulching and plastic mulching optimized spring wheat and pea root system distribution, compared with conventional tillage, increased spring wheat and field pea root length and root surface area ratio at 0-10 cm depths at the seedling stage, the root distribution at deeper depths increased significantly at flowering and maturity stages, and no tillage with straw mulching increased root length and root surface area ratio by 3.3% and 9.7% respectively, in 30-80 cm soil layer at the flowering stage. The total root length, root surface area and yield had significantly positive correlation for spring wheat in each growth period, and the total root length and pea yield also had significant positive correlation. No tillage with straw mulching and plastic mulching boosted yield of spring wheat and pea by 23.4%-38.7% compared with the conventional tillage, and the water use efficiency was increased by 13.7%-28.5%. It was concluded that no-till farming and straw mulching (plastic) could increase crop root length and root surface area, optimize the spatial distribution of roots in the soil, enhance crop root layer absorption ability, so as to improve crop yield and water utilization.

Heterogeneity and topsoil depletion due to tillage erosion and soil co-extraction with root vegetables: a serious threat to sustainable agricultural land use in the UK

NASA Astrophysics Data System (ADS)

Quine, Timothy; van Oost, Kristof

2010-05-01

The term soil erosion has become almost synonymous with water erosion and yet tillage erosion and soil loss with root crop harvest, although less visible, may be responsible for the majority of the on-site costs of soil erosion in many arable areas of the UK. The study reported here is a first attempt to model soil erosion associated with these processes in England and Wales, at the National scale. A GIS-based modelling approach in the Arc/Info environment is employed in order to meet the requirement for large-scale evaluation of erosion severity. Existing models that have been subject to independent test are used or adapted and widely available data is employed in model parameterisation. Tillage erosion is simulated using a diffusion-type model and a slope curvature index derived from coarse-scale topographic data. The curvature index is calibrated by statistical comparison to curvature values derived from a high resolution digital terrain model. Soil loss with root crop harvest is simulated using information concerning patterns of sugar beet and potato cultivation and estimation of soil moisture during the crop harvest season. Soil loss associated with root crop harvest may be as high as 1 t ha-1 year-1 if land is permanently used for root crops in a 3 year rotation. However, when the arable area of the UK is considered as a whole root crop harvest is responsible for a mean rate of soil loss of approximately 0.1 t ha-1 year-1. Tillage erosion is found to be the dominant process of soil redistribution and onsite erosion on arable land, in comparison with both soil loss through root crop harvest and with long-term water erosion rates. Mean gross rates of tillage erosion were found to be 3.7 t ha-1 year-1, representing approximately 7.4 t ha-1 year-1 erosion and the same rate of deposition. Soil redistribution at these rates is generating an heterogeneous soilscape in which continued functioning for food and fibre production may be jeopardized. These problems may be exacerbated by increased water stress in eroded soils if climate change does, as predicted, result in hotter and drier summers.

A Pipeline for 3D Digital Optical Phenotyping Plant Root System Architecture

NASA Astrophysics Data System (ADS)

Davis, T. W.; Shaw, N. M.; Schneider, D. J.; Shaff, J. E.; Larson, B. G.; Craft, E. J.; Liu, Z.; Kochian, L. V.; Piñeros, M. A.

2017-12-01

This work presents a new pipeline for digital optical phenotyping the root system architecture of agricultural crops. The pipeline begins with a 3D root-system imaging apparatus for hydroponically grown crop lines of interest. The apparatus acts as a self-containing dark room, which includes an imaging tank, motorized rotating bearing and digital camera. The pipeline continues with the Plant Root Imaging and Data Acquisition (PRIDA) software, which is responsible for image capturing and storage. Once root images have been captured, image post-processing is performed using the Plant Root Imaging Analysis (PRIA) command-line tool, which extracts root pixels from color images. Following the pre-processing binarization of digital root images, 3D trait characterization is performed using the next-generation RootReader3D software. RootReader3D measures global root system architecture traits, such as total root system volume and length, total number of roots, and maximum rooting depth and width. While designed to work together, the four stages of the phenotyping pipeline are modular and stand-alone, which provides flexibility and adaptability for various research endeavors.

Genetic diversity of root system architecture in response to drought stress in grain legumes.

PubMed

Ye, Heng; Roorkiwal, Manish; Valliyodan, Babu; Zhou, Lijuan; Chen, Pengyin; Varshney, Rajeev K; Nguyen, Henry T

2018-06-06

Climate change has increased the occurrence of extreme weather patterns globally, causing significant reductions in crop production, and hence threatening food security. In order to meet the food demand of the growing world population, a faster rate of genetic gains leading to productivity enhancement for major crops is required. Grain legumes are an essential commodity in optimal human diets and animal feed because of their unique nutritional composition. Currently, limited water is a major constraint in grain legume production. Root system architecture (RSA) is an important developmental and agronomic trait, which plays vital roles in plant adaptation and productivity under water-limited environments. A deep and proliferative root system helps extract sufficient water and nutrients under these stress conditions. The integrated genetics and genomics approach to dissect molecular processes from genome to phenome is key to achieve increased water capture and use efficiency through developing better root systems. Success in crop improvement under drought depends on discovery and utilization of genetic variations existing in the germplasm. In this review, we summarize current progress in the genetic diversity in major legume crops, quantitative trait loci (QTLs) associated with RSA, and the importance and applications of recent discoveries associated with the beneficial root traits towards better RSA for enhanced drought tolerance and yield.

Breeding crop plants with deep roots: their role in sustainable carbon, nutrient and water sequestration.

PubMed

Kell, Douglas B

2011-09-01

The soil represents a reservoir that contains at least twice as much carbon as does the atmosphere, yet (apart from 'root crops') mainly just the above-ground plant biomass is harvested in agriculture, and plant photosynthesis represents the effective origin of the overwhelming bulk of soil carbon. However, present estimates of the carbon sequestration potential of soils are based more on what is happening now than what might be changed by active agricultural intervention, and tend to concentrate only on the first metre of soil depth. Breeding crop plants with deeper and bushy root ecosystems could simultaneously improve both the soil structure and its steady-state carbon, water and nutrient retention, as well as sustainable plant yields. The carbon that can be sequestered in the steady state by increasing the rooting depths of crop plants and grasses from, say, 1 m to 2 m depends significantly on its lifetime(s) in different molecular forms in the soil, but calculations (http://dbkgroup.org/carbonsequestration/rootsystem.html) suggest that this breeding strategy could have a hugely beneficial effect in stabilizing atmospheric CO(2). This sets an important research agenda, and the breeding of plants with improved and deep rooting habits and architectures is a goal well worth pursuing.

Root development of winter wheat in erosion-affected soils depending on the position in a hummocky ground moraine soil landscape

NASA Astrophysics Data System (ADS)

Herbrich, Marcus; Gerke, Horst H.; Sommer, Michael

2017-04-01

The soil water uptake by crops is a key process in the hydrological cycle of agricultural ecosystems. In the arable hummocky ground moraines soil landscapes, an erosion-induced spatial differentiation of soil types has been established due to water and tillage erosion. Crop development may reflect soil landscape patterns and erosion-induced soil profile modifications, respectively, by increased or reduced plant and root growth. The objective was analyze field data of the root density and the root lengths of winter wheat for a non-eroded reference soil at the plateau (Albic Luvisol), an extremely eroded soil at steep midslope (Calcaric Regosol), and depositional soil at the footslope (Colluvic Regosol) using the minirhizotron technique. From 9/14 to 8/15 results indicate that root density values were highest for the Colluvic Regosol, followed by the Albic Luvisol and lowest for the Calcaric Regosol. In turn, the lowest maximum root penetration depth was found in the Colluvic Regosol because of the relatively high and fluctuating water table at this landscape position. The analyzed field root data revealed positive relations to above-ground plant parameters and corroborated the hypothesis that the crop root system was reflecting erosion-induced soil profile modifications. When accounting for the position-specific root development, the simulation of water and solute movement suggested differences in the balances as compared to assuming a spatially uniform development.

Phytotoxicity of water-soluble substances from alfalfa and barley soil extracts on four crop species.

PubMed

Read, J J; Jensen, E H

1989-02-01

Problems associated with continuously planting alfalfa (Medicago saliva L.) or seeding to thicken depleted alfalfa stands may be due to autotoxicity, an intraspecific form of allelopathy. A bioassay approach was utilized to characterize the specificity and chemical nature of phytotoxins in extracts of alfalfa soils as compared to fallow soil or soil where a cereal was the previous crop. In germination chamber experiments, water-soluble substances present in methanol extracts of soil cropped to alfalfa or barley (Hordeum vulgare L.) decreased seedling root length of alfalfa L-720, winter wheat (Triticum aestivum L. Nugaines) and radish (Raphanus sativa L. Crimson Giant). Five days after germination, seedling dry weights of alfalfa and radish in alfalfa soil extracts were lower compared to wheat or red clover (Trifolium pralense L. Kenland). Growth of red clover was not significantly reduced by soil extracts from cropped soil. Extracts of crop residue screened from soil cropped to alfalfa or barley significantly reduced seedling root length; extracts of alfalfa residue caused a greater inhibition of seedling dry weight than extracts of barely residue. A phytotoxic, unidentified substance present in extracts of crop residue screened from alfalfa soil, which inhibited seedling root length of alfalfa, was isolated by thin-layer chromatography (TLC). Residues from a soil cropped continuously to alfalfa for 10 years had the greatest phytotoxic activity.

Analysis of changes in relative elemental growth rate patterns in the elongation zone of Arabidopsis roots upon gravistimulation

NASA Technical Reports Server (NTRS)

Mullen, J. L.; Ishikawa, H.; Evans, M. L.

1998-01-01

Although Arabidopsis is an important system for studying root physiology, the localized growth patterns of its roots have not been well defined, particularly during tropic responses. In order to characterize growth rate profiles along the apex of primary roots of Arabidopsis thaliana (L.) Heynh (ecotype Columbia) we applied small charcoal particles to the root surface and analyzed their displacement during growth using an automated video digitizer system with custom software for tracking the markers. When growing vertically, the maximum elongation rate occurred 481 +/- 50 microns back from the extreme tip of the root (tip of root cap), and the elongation zone extended back to 912 +/- 137 microns. The distal elongation zone (DEZ) has previously been described as the apical region of the elongation zone in which the relative elemental growth rate (REGR) is < or = 30% of the peak rate in the central elongation zone. By this definition, our data indicate that the basal limit of the DEZ was located 248 +/- 30 microns from the root tip. However, after gravistimulation, the growth patterns of the root changed. Within the first hour of graviresponse, the basal limit of the DEZ and the position of peak REGR shifted apically on the upper flank of the root. This was due to a combination of increased growth in the DEZ and growth inhibition in the central elongation zone. On the lower flank, the basal limit of the DEZ shifted basipetally as the REGR decreased. These factors set up the gradient of growth rate across the root, which drives curvature.

Enhancing phosphorus and zinc acquisition efficiency in rice: a critical review of root traits and their potential utility in rice breeding

PubMed Central

Rose, T. J.; Impa, S. M.; Rose, M. T.; Pariasca-Tanaka, J.; Mori, A.; Heuer, S.; Johnson-Beebout, S. E.; Wissuwa, M.

2013-01-01

Background Rice is the world's most important cereal crop and phosphorus (P) and zinc (Zn) deficiency are major constraints to its production. Where fertilizer is applied to overcome these nutritional constraints it comes at substantial cost to farmers and the efficiency of fertilizer use is low. Breeding crops that are efficient at acquiring P and Zn from native soil reserves or fertilizer sources has been advocated as a cost-effective solution, but would benefit from knowledge of genes and mechanisms that confer enhanced uptake of these nutrients by roots. Scope This review discusses root traits that have been linked to P and Zn uptake in rice, including traits that increase mobilization of P/Zn from soils, increase the volume of soil explored by roots or root surface area to recapture solubilized nutrients, enhance the rate of P/Zn uptake across the root membrane, and whole-plant traits that affect root growth and nutrient capture. In particular, this review focuses on the potential for these traits to be exploited through breeding programmes to produce nutrient-efficient crop cultivars. Conclusions Few root traits have so far been used successfully in plant breeding for enhanced P and Zn uptake in rice or any other crop. Insufficient genotypic variation for traits or the failure to enhance nutrient uptake under realistic field conditions are likely reasons for the limited success. More emphasis is needed on field studies in mapping populations or association panels to identify those traits and underlying genes that are able to enhance nutrient acquisition beyond the level already present in most cultivars. PMID:23071218

Root-zone temperature and water availability affect early root growth of planted longleaf pine

Treesearch

M.A. Sword

1995-01-01

Longleaf pine seedlings from three seed sources were exposed to three root-zone temperatures and three levels of water availability for 28 days. Root growth declined as temperature and water availability decreased. Root growth differed by seed source. Results suggest that subtle changes in the regeneration environment may influence early root growth of longleaf pine...

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming.

PubMed

Hartman, Kyle; van der Heijden, Marcel G A; Wittwer, Raphaël A; Banerjee, Samiran; Walser, Jean-Claude; Schlaeppi, Klaus

2018-01-16

Harnessing beneficial microbes presents a promising strategy to optimize plant growth and agricultural sustainability. Little is known to which extent and how specifically soil and plant microbiomes can be manipulated through different cropping practices. Here, we investigated soil and wheat root microbial communities in a cropping system experiment consisting of conventional and organic managements, both with different tillage intensities. While microbial richness was marginally affected, we found pronounced cropping effects on community composition, which were specific for the respective microbiomes. Soil bacterial communities were primarily structured by tillage, whereas soil fungal communities responded mainly to management type with additional effects by tillage. In roots, management type was also the driving factor for bacteria but not for fungi, which were generally determined by changes in tillage intensity. To quantify an "effect size" for microbiota manipulation, we found that about 10% of variation in microbial communities was explained by the tested cropping practices. Cropping sensitive microbes were taxonomically diverse, and they responded in guilds of taxa to the specific practices. These microbes also included frequent community members or members co-occurring with many other microbes in the community, suggesting that cropping practices may allow manipulation of influential community members. Understanding the abundance patterns of cropping sensitive microbes presents the basis towards developing microbiota management strategies for smart farming. For future targeted microbiota management-e.g., to foster certain microbes with specific agricultural practices-a next step will be to identify the functional traits of the cropping sensitive microbes.

Quantifying long-term responses of crop yield and nitrate leaching in an intensive farmland using agro-eco-environmental model.

PubMed

Sun, Mei; Huo, Zailin; Zheng, Yanxia; Dai, Xiaoqin; Feng, Shaoyuan; Mao, Xiaomin

2018-02-01

Quantitatively ascertaining and analyzing long-term responses of crop yield and nitrate leaching on varying irrigation and fertilization treatments are focal points for guaranteeing crop yield and reducing nitrogen loss. The calibrated agricultural-hydrological RZWQM2 model was used to explore the long-term (2003-2013) transport processes of water and nitrogen and the nitrate leaching amount into groundwater in summer maize and winter wheat rotation field in typical intensive plant area in the North China Plain, Daxing district of Beijing. Simulation results showed that application rates of irrigation and nitrogen fertilizer have couple effects on crop yields and nitrogen leaching of root zone. When both the irrigation and fertilizer for summer maize and winter wheat were 400mm and 400kgNha -1 , respectively, nitrate leaching into groundwater accounted for 47.9% of application amount of nitrogen fertilizer. When application amount of irrigation is 200mm and fertilization is 200kgNha -1 , NUPE (nitrogen uptake efficiency), NUE (nitrogen use efficiency), NPFP (nitrogen partial factor productivity), and W pi (irrigation water productive efficiency) were in general higher than that under other irrigation and fertilization condition (irrigation from 104-400mm, fertilizer 104-400kgNha -1 ). Irrigation bigger than 200mm could shorten the response time of nitrate leaching in deeper soil layer in different irrigation treatment. Copyright © 2017 Elsevier B.V. All rights reserved.

Weed Growth and Efficacy of Pre-Applied Herbicides in Alternative Rooting Substrates Used in Container-Grown Nursery Crops

USDA-ARS?s Scientific Manuscript database

Container-grown nursery crops in the Southeastern United States are typically grown in a rooting substrate comprised primarily of the ground bark of pine trees. However pine bark is becoming less available and more costly due to changes in production and marketed practices within Southeastern pine f...

Movement of endogenous calcium in the elongating zone of graviresponding roots of Zea mays

NASA Technical Reports Server (NTRS)

Moore, R.; Cameron, I. L.; Smith, N. K.

1989-01-01

Endogenous calcium (Ca) accumulates along the lower side of the elongating zone of horizontally oriented roots of Zea mays cv. Yellow Dent. This accumulation of Ca correlates positively with the onset of gravicurvature, and occurs in the cytoplasm, cell walls and mucilage of epidermal cells. Corresponding changes in endogenous Ca do not occur in cortical cells of the elongating zone of intact roots. These results indicate that the calcium asymmetries associated with root gravicurvature occur in the outermost layers of the root.

Root-knot nematode management in double-cropped plasticulture vegetables.

PubMed

Desaeger, J A; Csinos, A S

2006-03-01

Combination treatments of chisel-injected fumigants (methyl bromide, 1,3-D, metam sodium, and chloropicrin) on a first crop, followed by drip-applied fumigants (metam sodium and 1,3-D +/- chloropicrin) on a second crop, with and without oxamyl drip applications were evaluated for control of Meloidogyne incognita in three different tests (2002 to 2004) in Tifton, GA. First crops were eggplant or tomato, and second crops were cantaloupe, squash, or jalapeno pepper. Double-cropped vegetables suffered much greater root-knot nematode (RKN) pressure than first crops, and almost-total yield loss occurred when second crops received no nematicide treatment. On a first crop of eggplant, all fumigants provided good nematode control and average yield increases of 10% to 15 %. On second crops, higher application rates and fumigant combinations (metam sodium and 1,3-D +/- chloropicrin) improved RKN control and increased yields on average by 20% to 35 % compared to the nonfumigated control. Oxamyl increased yields of the first crop in 2003 on average by 10% to 15% but had no effect in 2004 when RKN failed to establish itself. On double-cropped squash in 2003, oxamyl following fumigation provided significant additional reduction in nematode infection and increased squash yields on average by 30% to 75%.

Comparison of Satellite-based Basal and Adjusted Evapotranspiration for Several California Crops

NASA Astrophysics Data System (ADS)

Johnson, L.; Lund, C.; Melton, F. S.

2013-12-01

There is a continuing need to develop new sources of information on agricultural crop water consumption in the arid Western U.S. Pursuant to the California Water Conservation Act of 2009, for instance, the stakeholder community has developed a set of quantitative indicators involving measurement of evapotranspiration (ET) or crop consumptive use (Calif. Dept. Water Resources, 2012). Fraction of reference ET (or, crop coefficients) can be estimated from a biophysical description of the crop canopy involving green fractional cover (Fc) and height as per the FAO-56 practice standard of Allen et al. (1998). The current study involved 19 fields in California's San Joaquin Valley and Central Coast during 2011-12, growing a variety of specialty and commodity crops: lettuce, raisin, tomato, almond, melon, winegrape, garlic, peach, orange, cotton, corn and wheat. Most crops were on surface or subsurface drip, though micro-jet, sprinkler and flood were represented as well. Fc was retrospectively estimated every 8-16 days by optical satellite data and interpolated to a daily timestep. Crop height was derived as a capped linear function of Fc using published guideline maxima. These variables were used to generate daily basal crop coefficients (Kcb) per field through most or all of each respective growth cycle by the density coefficient approach of Allen & Pereira (2009). A soil water balance model for both topsoil and root zone, based on FAO-56 and using on-site measurements of applied irrigation and precipitation, was used to develop daily soil evaporation and crop water stress coefficients (Ke, Ks). Key meteorological variables (wind speed, relative humidity) were extracted from the California Irrigation Management Information System (CIMIS) for climate correction. Basal crop ET (ETcb) was then derived from Kcb using CIMIS reference ET. Adjusted crop ET (ETc_adj) was estimated by the dual coefficient approach involving Kcb, Ke, and incorporating Ks. Cumulative ETc_adj throughout each monitoring period was lower than cumulative ETb for most crops, indicating that effect of water stress tended to exceed that of soil evaporation relative to basal conditions. We present results from the analysis and discuss implications for operational use of satellite-based Kcb and ETcb estimates for agricultural water resource management.

Organization of cortical microtubules in graviresponding maize roots

NASA Technical Reports Server (NTRS)

Blancaflor, E. B.; Hasenstein, K. H.

1993-01-01

Immunofluorescence labeling of cortical microtubules (MTs) was used to investigate the relationship between MT arrangement and changes in growth rate of the upper and lower sides of horizontally placed roots of maize (Zea mays L. cv. Merit). Cap cells and cells of the elongation zone of roots grown vertically in light or darkness showed MT arrangements that were transverse (perpendicular) to the growth direction. Microtubules of cells basal to the elongation zone typically showed oblique orientation. Two hours after horizontal reorientation, cap cells of gravicompetent, light-grown and curving roots contained MTs parallel to the gravity vector. The MT arrangement on the upper side of the elongation zone remained transverse but the MTs of the outer four to five layers of cortical cells along the lower side of the elongation zone showed reorientation parallel to the axis of the root. The MTs of the lower epidermis retained their transverse orientation. Dark-grown roots did not curve and did not show reorientation of MTs in cells of the root cap or elongation zone. The data indicate that MT depolymerization and reorientation is correlated with reduction in growth rate, and that MT reorientation is one of the steps of growth control of graviresponding roots.

Apoplastic Alkalinization Is Instrumental for the Inhibition of Cell Elongation in the Arabidopsis Root by the Ethylene Precursor 1-Aminocyclopropane-1-Carboxylic Acid1[W][OA

PubMed Central

Staal, Marten; De Cnodder, Tinne; Simon, Damien; Vandenbussche, Filip; Van Der Straeten, Dominique; Verbelen, Jean-Pierre; Elzenga, Theo; Vissenberg, Kris

2011-01-01

In Arabidopsis (Arabidopsis thaliana; Columbia-0) roots, the so-called zone of cell elongation comprises two clearly different domains: the transition zone, a postmeristematic region (approximately 200–450 μm proximal of the root tip) with a low rate of elongation, and a fast elongation zone, the adjacent proximal region (450 μm away from the root tip up to the first root hair) with a high rate of elongation. In this study, the surface pH was measured in both zones using the microelectrode ion flux estimation technique. The surface pH is highest in the apical part of the transition zone and is lowest at the basal part of the fast elongation zone. Fast cell elongation is inhibited within minutes by the ethylene precursor 1-aminocyclopropane-1-carboxylic acid; concomitantly, apoplastic alkalinization occurs in the affected root zone. Fusicoccin, an activator of the plasma membrane H+-ATPase, can partially rescue this inhibition of cell elongation, whereas the inhibitor N,N′-dicyclohexylcarbodiimide does not further reduce the maximal cell length. Microelectrode ion flux estimation experiments with auxin mutants lead to the final conclusion that control of the activity state of plasma membrane H+-ATPases is one of the mechanisms by which ethylene, via auxin, affects the final cell length in the root. PMID:21282405

SMERGE: A multi-decadal root-zone soil moisture product for CONUS

NASA Astrophysics Data System (ADS)

Crow, W. T.; Dong, J.; Tobin, K. J.; Torres, R.

2017-12-01

Multi-decadal root-zone soil moisture products are of value for a range of water resource and climate applications. The NASA-funded root-zone soil moisture merging project (SMERGE) seeks to develop such products through the optimal merging of land surface model predictions with surface soil moisture retrievals acquired from multi-sensor remote sensing products. This presentation will describe the creation and validation of a daily, multi-decadal (1979-2015), vertically-integrated (both surface to 40 cm and surface to 100 cm), 0.125-degree root-zone product over the contiguous United States (CONUS). The modeling backbone of the system is based on hourly root-zone soil moisture simulations generated by the Noah model (v3.2) operating within the North American Land Data Assimilation System (NLDAS-2). Remotely-sensed surface soil moisture retrievals are taken from the multi-sensor European Space Agency Climate Change Initiative soil moisture data set (ESA CCI SM). In particular, the talk will detail: 1) the exponential smoothing approach used to convert surface ESA CCI SM retrievals into root-zone soil moisture estimates, 2) the averaging technique applied to merge (temporally-sporadic) remotely-sensed with (continuous) NLDAS-2 land surface model estimates of root-zone soil moisture into the unified SMERGE product, and 3) the validation of the SMERGE product using long-term, ground-based soil moisture datasets available within CONUS.

Assessment of allelopathic properties of Aloe ferox Mill. on turnip, beetroot and carrot.

PubMed

Arowosegbe, Sunday; Afolayan, Anthony J

2012-01-01

Turnip (Brassica rapa var. rapa L.), beetroot (Beta vulgaris L.) and carrot (Daucus carota L.) are common vegetables in South Africa. The allelopathic potential of aqueous leaf and root extracts of Aloe ferox Mill.- a highly valued medicinal plant- was evaluated against seed germination and seedling growth of the three vegetables in Petri dish experiments. The extracts were tested at concentrations of 2, 4, 6, 8, and 10 mg/mL. Leaf extract concentrations above 4 mg/mL inhibited the germination of all the crops, while the root extract had no significant effect on germination irrespective of concentration. Interestingly, the lowest concentration of leaf extract stimulated root length elongation of beetroot by 31.71%. Other concentrations significantly inhibited both root and shoot growth of the vegetable crops except the turnip shoot. The most sensitive crop was carrot, with percentage inhibition ranging from 29.15 to 100% for root and shoot lengths. Lower percentage inhibition was observed for the root extract than the leaf extract against shoot growth of beetroot and carrot. The results from this study suggested the presence of allelochemicals mostly in the leaves of A. ferox that could inhibit the growth of the turnip, beetroot and carrot.

Speciation Matters: Bioavailability of Silver and Silver Sulfide Nanoparticles to Alfalfa (Medicago sativa).

PubMed

Stegemeier, John P; Schwab, Fabienne; Colman, Benjamin P; Webb, Samuel M; Newville, Matthew; Lanzirotti, Antonio; Winkler, Christopher; Wiesner, Mark R; Lowry, Gregory V

2015-07-21

Terrestrial crops are directly exposed to silver nanoparticles (Ag-NPs) and their environmentally transformed analog silver sulfide nanoparticles (Ag2S-NPs) when wastewater treatment biosolids are applied as fertilizer to agricultural soils. This leads to a need to understand their bioavailability to plants. In the present study, the mechanisms of uptake and distribution of silver in alfalfa (Medicago sativa) were quantified and visualized upon hydroponic exposure to Ag-NPs, Ag2S-NPs, and AgNO3 at 3 mg total Ag/L. Total silver uptake was measured in dried roots and shoots, and the spatial distribution of elements was investigated using transmission electron microscopy (TEM) and synchrotron-based X-ray imaging techniques. Despite large differences in release of Ag(+) ions from the particles, Ag-NPs, Ag2S-NPs, and Ag(+) became associated with plant roots to a similar degree, and exhibited similarly limited (<1%) amounts of translocation of silver into the shoot system. X-ray fluorescence (XRF) mapping revealed differences in the distribution of Ag into roots for each treatment. Silver nanoparticles mainly accumulated in the (columella) border cells and elongation zone, whereas Ag(+) accumulated more uniformly throughout the root. In contrast, Ag2S-NPs remained largely adhered to the root exterior, and the presence of cytoplasmic nano-SixOy aggregates was observed. Exclusively in roots exposed to particulate silver, NPs smaller than the originally dosed NPs were identified by TEM in the cell walls. The apparent accumulation of Ag in the root apoplast determined by XRF, and the presence of small NPs in root cell walls suggests uptake of partially dissolved NPs and translocation along the apoplast.

The role of the distal elongation zone in the response of maize roots to auxin and gravity

NASA Technical Reports Server (NTRS)

Ishikawa, H.; Evans, M. L.

1993-01-01

We used a video digitizer system to (a) measure changes in the pattern of longitudinal surface extension in primary roots of maize (Zea mays L.) upon application and withdrawal of auxin and (b) compare these patterns during gravitropism in control roots and roots pretreated with auxin. Special attention was paid to the distal elongation zone (DEZ), arbitrarily defined as the region between the meristem and the point within the elongation zone at which the rate of elongation reaches 0.3 of the peak rate. For roots in aqueous solution, the basal limit of the DEZ is about 2.5 mm behind the tip of the root cap. Auxin suppressed elongation throughout the elongation zone, but, after 1 to 3 h, elongation resumed, primarily as a result of induction of rapid elongation in the DEZ. Withdrawal of auxin during the period of strong inhibition resulted in exceptionally rapid elongation attributable to the initiation of rapid elongation in the DEZ plus recovery in the main elongation zone. Gravistimulation of auxin-inhibited roots induced rapid elongation in the DEZ along the top of the root. This resulted in rapid gravitropism even though the elongation rate of the root was zero before gravistimulation. The results indicate that cells of the DEZ differ from cells in the bulk of the elongation zone with respect to auxin sensitivity and that DEZ cells play an important role in gravitropism.

Observation and Modelling of Soil Water Content Towards Improved Performance Indicators of Large Irrigation Schemes

NASA Astrophysics Data System (ADS)

Labbassi, Kamal; Akdim, Nadia; Alfieri, Silvia Maria; Menenti, Massimo

2014-05-01

Irrigation performance may be evaluated for different objectives such as equity, adequacy, or effectiveness. We are using two performance indicators: IP2 measures the consistency of the allocation of the irrigation water with gross Crop Water requirements, while IP3 measures the effectiveness of irrigation by evaluating the increase in crop transpiration between the case of no irrigation and the case of different levels of irrigation. To evaluate IP3 we need to calculate the soil water balance for the two cases. We have developed a system based on the hydrological model SWAP (Soil Water atmosphere Plant) to calculate spatial and temporal patterns of crop transpiration T(x, y, t) and of the vertical distribution of soil water content θ(x, y, z, t). On one hand, in the absence of ground measurement of soil water content to validate and evaluate the precision of the estimated one, a possibility would be to use satellite retrievals of top soil water content, such as the data to be provided by SMAP. On the other hand, to calculate IP3 we need root zone rather than top soil water content. In principle, we could use the model SWAP to establish a relationship between the top soil and root zone water content. Such relationship could be a simple empirical one or a data assimilation procedure. In our study area (Doukkala- Morocco) we have assessed the consistency of the water allocation with the actual irrigated area and crop water requirements (CWR) by using a combination of multispectral satellite image time series (i,e RapidEye (REIS), SPOT4 (HRVIR1) and Landsat 8 (OLI) images acquired during the 2012/2013 agricultural season). To obtain IP2 (x, y, t) we need to determine ETc (x, y, t). We have applied two (semi)empirical approaches: the first one is the Kc-NDVI method, based on the correlation between the Near Difference Vegetation Index (NDVI) and the value of crop coefficient (kc); the second one is the analytical approach based on the direct application of Penman-Monteith equation with reflectance-based estimates of canopy biophysical variables, such as surface albedo (r), leaf area index (LAI) and crop height (hc). The validation of spatial results using the dual crop coefficient approach (kcb) showed that the satellite-based estimates of ETc corresponded well with ground-based ETc i.e, R²=0.75 and RMSE=0.79 versus R²=0.73 and RMSE=0.89 for respectively kc-NDVI and analytical approach. To monitor IP3 (x, y, t) with the SWAP model we mapped soil hydrological properties combining soil maps with grain size analysis of a number of samples, and agricultural crops using multi-temporal classification of NDVI time series. The assessment of irrigation performance in term of adequacy between requirement and allocation showed that CWR are much larger than water supply for entire area, this mismatch is improved in the beginning of the growing season by means of Irrigation water requirement (IWR) and even more using the net irrigation water requirement (NIWR) estimated using SWAP model. We expect that the availability of SMAP data products will significantly improve the reliability and temporal sampling of our indicators.

Ethylene Inhibits Root Elongation during Alkaline Stress through AUXIN1 and Associated Changes in Auxin Accumulation.

PubMed

Li, Juan; Xu, Heng-Hao; Liu, Wen-Cheng; Zhang, Xiao-Wei; Lu, Ying-Tang

2015-08-01

Soil alkalinity causes major reductions in yield and quality of crops worldwide. The plant root is the first organ sensing soil alkalinity, which results in shorter primary roots. However, the mechanism underlying alkaline stress-mediated inhibition of root elongation remains to be further elucidated. Here, we report that alkaline conditions inhibit primary root elongation of Arabidopsis (Arabidopsis thaliana) seedlings by reducing cell division potential in the meristem zones and that ethylene signaling affects this process. The ethylene perception antagonist silver (Ag(+)) alleviated the inhibition of root elongation by alkaline stress. Moreover, the ethylene signaling mutants ethylene response1-3 (etr1-3), ethylene insensitive2 (ein2), and ein3-1 showed less reduction in root length under alkaline conditions, indicating a reduced sensitivity to alkalinity. Ethylene biosynthesis also was found to play a role in alkaline stress-mediated root inhibition; the ethylene overproducer1-1 mutant, which overproduces ethylene because of increased stability of 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE5, was hypersensitive to alkaline stress. In addition, the ethylene biosynthesis inhibitor cobalt (Co(2+)) suppressed alkaline stress-mediated inhibition of root elongation. We further found that alkaline stress caused an increase in auxin levels by promoting expression of auxin biosynthesis-related genes, but the increase in auxin levels was reduced in the roots of the etr1-3 and ein3-1 mutants and in Ag(+)/Co(2+)-treated wild-type plants. Additional genetic and physiological data showed that AUXIN1 (AUX1) was involved in alkaline stress-mediated inhibition of root elongation. Taken together, our results reveal that ethylene modulates alkaline stress-mediated inhibition of root growth by increasing auxin accumulation by stimulating the expression of AUX1 and auxin biosynthesis-related genes. © 2015 American Society of Plant Biologists. All Rights Reserved.

[Allelopathy of garlic root exudates on different receiver vegetables].

PubMed

Zhou, Yan-li; Cheng, Zhi-hui; Meng, Huan-wen

2007-01-01

By the method of tissue culture under sterilized condition, this paper studied the allelopathy of garlic root exudates on lettuce, hot pepper, radish, cucumber, Chinese cabbage, and tomato. The results showed that garlic root exudates had no evident effects on the germination rate, germination index, shoot height, and protective enzyme system of test crops, but significantly increased the root length, aboveground fresh mass, and root fresh mass of lettuce, with the RIs being +0.163, +0.106, +0.318, respectively. The exudates also increased the root length of Chinese cabbage, with a RI of +0.120. For other test crops, no significant difference was observed between the treatments and the control. Garlic root exudates significantly increased the chlorophyll content and root activity of the receiver vegetables. The strongest promotion effects were found on chlorophyll content in radish, with RI being +0.282, and on root activity of cucumber, with RI being +0.184. The exudates promoted the nutrient absorption of all the receiver vegetables.

Overestimation of Crop Root Biomass in Field Experiments Due to Extraneous Organic Matter.

PubMed

Hirte, Juliane; Leifeld, Jens; Abiven, Samuel; Oberholzer, Hans-Rudolf; Hammelehle, Andreas; Mayer, Jochen

2017-01-01

Root biomass is one of the most relevant root parameters for studies of plant response to environmental change, soil carbon modeling or estimations of soil carbon sequestration. A major source of error in root biomass quantification of agricultural crops in the field is the presence of extraneous organic matter in soil: dead roots from previous crops, weed roots, incorporated above ground plant residues and organic soil amendments, or remnants of soil fauna. Using the isotopic difference between recent maize root biomass and predominantly C3-derived extraneous organic matter, we determined the proportions of maize root biomass carbon of total carbon in root samples from the Swiss long-term field trial "DOK." We additionally evaluated the effects of agricultural management (bio-organic and conventional), sampling depth (0-0.25, 0.25-0.5, 0.5-0.75 m) and position (within and between maize rows), and root size class (coarse and fine roots) as defined by sieve mesh size (2 and 0.5 mm) on those proportions, and quantified the success rate of manual exclusion of extraneous organic matter from root samples. Only 60% of the root mass that we retrieved from field soil cores was actual maize root biomass from the current season. While the proportions of maize root biomass carbon were not affected by agricultural management, they increased consistently with soil depth, were higher within than between maize rows, and were higher in coarse (>2 mm) than in fine (≤2 and >0.5) root samples. The success rate of manual exclusion of extraneous organic matter from root samples was related to agricultural management and, at best, about 60%. We assume that the composition of extraneous organic matter is strongly influenced by agricultural management and soil depth and governs the effect size of the investigated factors. Extraneous organic matter may result in severe overestimation of recovered root biomass and has, therefore, large implications for soil carbon modeling and estimations of the climate change mitigation potential of soils.

Glyphosate in Runoff Waters and in the Root-Zone: A Review

PubMed Central

Saunders, Lyndsay E.; Pezeshki, Reza

2015-01-01

Glyphosate is the most commonly-used herbicide in the world. The present review summarizes the discovery, prevalence, chemical and physical properties, mode of action and effects in plants, glyphosate resistance and the environmental fate of glyphosate. Numerous studies are reviewed that demonstrate that glyphosate may run off of fields where it is applied, while other studies provide evidence that plant roots can take up glyphosate. Non-target vegetation may be exposed to glyphosate in the root-zone, where it has the potential to remove aqueous glyphosate from the system. Further study on the effects of root-zone glyphosate on non-target vegetation is required to develop best management practices for land managers seeking to ameliorate the effects of root-zone glyphosate exposure. PMID:29051473

Root production, distribution, and turnover in conventional and organic northern highbush blueberry systems

USDA-ARS?s Scientific Manuscript database

Northern highbush blueberry is a shallow-rooted crop with very fine, fibrous roots. Recently, we installed minirhizotrons (root observation tubes) in a conventional and an organic blueberry planting in western Oregon. We wanted to know exactly when and where new roots were being produced and determi...

Root production, distribution, and turnover in conventional and organic northern highbush blueberry systems

USDA-ARS?s Scientific Manuscript database

Northern highbush blueberry (Vaccinium corymbosum L.) is a shallow-rooted crop with very fine, fibrous roots. Recently, we installed minirhizotrons (root observation tubes) in a conventional and an organic blueberry planting in western Oregon. We wanted to know exactly when and where new roots were ...

Cold temperature delays wound healing in postharvest sugarbeet roots

USDA-ARS?s Scientific Manuscript database

Storage temperature affects the rate and extent of wound-healing in a number of root and tuber crops. The effect of storage temperature on wound-healing in sugarbeet (Beta vulgaris L.) roots, however, is largely unknown. Wound-healing of sugarbeet roots was investigated using surface-abraded roots s...

Soil Carbon Budget During Establishment of Short Rotation Woody Crops

NASA Astrophysics Data System (ADS)

Coleman, M. D.

2003-12-01

Carbon budgets were monitored following forest harvest and during re-establishment of short rotation woody crops. Soil CO2 efflux was monitored using infared gas analyzer methods, fine root production was estimated with minirhizotrons, above ground litter inputs were trapped, coarse root inputs were estimated with developed allometric relationships, and soil carbon pools were measured in loblolly pine and cottonwood plantations. Our carbon budget allows evaluation of errors, as well as quantifying pools and fluxes in developing stands during non-steady-state conditions. Soil CO2 efflux was larger than the combined inputs from aboveground litter fall and root production. Fine-root production increased during stand development; however, mortality was not yet equivalent to production, showing the belowground carbon budget was not yet in equilibrium and root carbon standing crop was accruing. Belowground production was greater in cottonwood than pine, but the level of pine soil CO2 efflux was equal to or greater than that of cottonwood, indicating heterotrophic respiration was higher for pine. Comparison of unaccounted efflux with soil organic carbon changes provides verification of loss or accrual.

Plant/soil concentration ratios for paired field and garden crops, with emphasis on iodine and the role of soil adhesion.

PubMed

Sheppard, S C; Long, J M; Sanipelli, B

2010-12-01

In the effort to predict the risks associated with contaminated soils, considerable reliance is placed on plant/soil concentration ratio (CR) values measured at sites other than the contaminated site. This inevitably results in the need to extrapolate among the many soil and plant types. There are few studies that compare CR among plant types that encompass both field and garden crops. Here, CRs for 40 elements were measured for 25 crops from farm and garden sites chosen so the grain crops were in close proximity to the gardens. Special emphasis was placed on iodine (I) because data for this element are sparse. For many elements, there were consistent trends among CRs for the various crop types, with leafy crops > root crops ≥ fruit crops ≈ seed crops. Exceptions included CR values for As, K, Se and Zn which were highest in the seed crops. The correlation of CRs from one plant type to another was evident only when there was a wide range in soil concentrations. In comparing CRs between crop types, it became apparent that the relationships differed for the rare earth elements (REE), which also had very low CR values. The CRs for root and leafy crops of REE converged to a minimum value. This was attributed to soil adhesion, despite the samples being washed, and the average soil adhesion for root crops was 500 mg soil kg⁻¹ dry plant and for leafy crops was 5 g kg⁻¹. Across elements, the log CR was negatively correlated with log Kd (the soil solid/liquid partition coefficient), as expected. Although, this correlation is expected, measures of correlation coefficients suitable for stochastic risk assessment are not frequently reported. The results suggest that r ≈ -0.7 would be appropriate for risk assessment. Copyright © 2010 Elsevier Ltd. All rights reserved.

Ground Albedo Neutron Sensing (GANS) method for measurements of soil moisture in cropped fields

NASA Astrophysics Data System (ADS)

Andres Rivera Villarreyes, Carlos; Baroni, Gabriele; Oswald, Sascha E.

2013-04-01

Measurement of soil moisture at the plot or hill-slope scale is an important link between local vadose zone hydrology and catchment hydrology. However, so far only few methods are on the way to close this gap between point measurements and remote sensing. This study evaluates the applicability of the Ground Albedo Neutron Sensing (GANS) for integral quantification of seasonal soil moisture in the root zone at the scale of a field or small watershed, making use of the crucial role of hydrogen as neutron moderator relative to other landscape materials. GANS measurements were performed at two locations in Germany under different vegetative situations and seasonal conditions. Ground albedo neutrons were measured at (i) a lowland Bornim farmland (Brandenburg) cropped with sunflower in 2011 and winter rye in 2012, and (ii) a mountainous farmland catchment (Schaefertal, Harz Mountains) since middle 2011. At both sites depth profiles of soil moisture were measured at several locations in parallel by frequency domain reflectometry (FDR) for comparison and calibration. Initially, calibration parameters derived from a previous study with corn cover were tested under sunflower and winter rye periods at the same farmland. GANS soil moisture based on these parameters showed a large discrepancy compared to classical soil moisture measurements. Therefore, two new calibration approaches and four different ways of integration the soil moisture profile to an integral value for GANS were evaluated in this study. This included different sets of calibration parameters based on different growing periods of sunflower. New calibration parameters showed a good agreement with FDR network during sunflower period (RMSE = 0.023 m3 m-3), but they underestimated soil moisture in the winter rye period. The GANS approach resulted to be highly affected by temporal changes of biomass and crop types which suggest the need of neutron corrections for long-term observations with crop rotation. Finally, Bornim sunflower parameters were transferred to Schaefertal catchment for further evaluation. This study proves GANS potential to close the measurement gap between point scale and remote sensing scale; however, its calibration needs to be adapted for vegetation in cropped fields.

Effect of length of interval between cereal rye cover crop termination and corn planting on seedling root disease and corn growth

USDA-ARS?s Scientific Manuscript database

Cereal rye cover crops terminated immediately before corn planting can sometimes reduce corn population, early growth, and yield. We hypothesized that cereal rye may act as a green bridge for corn pathogens and may increase corn seedling root disease. A field experiment was conducted over two years ...

Agriculture and groundwater nitrate contamination in the Seine basin. The STICS-MODCOU modelling chain.

PubMed

Ledoux, E; Gomez, E; Monget, J M; Viavattene, C; Viennot, P; Ducharne, A; Benoit, M; Mignolet, C; Schott, C; Mary, B

2007-04-01

A software package is presented here to predict the fate of nitrogen fertilizers and the transport of nitrate from the rooting zone of agricultural areas to surface water and groundwater in the Seine basin, taking into account the long residence times of water and nitrate in the unsaturated and aquifer systems. Information on pedological characteristics, land use and farming practices is used to determine the spatial units to be considered. These data are converted into input data for the crop model STICS which simulates the water and nitrogen balances in the soil-plant system with a daily time-step. A spatial application of STICS has been derived at the catchment scale which computes the water and nitrate fluxes at the bottom of the rooting zone. These fluxes are integrated into a surface and groundwater coupled model MODCOU which calculates the daily water balance in the hydrological system, the flow in the rivers and the piezometric variations in the aquifers, using standard climatic data (rainfall, PET). The transport of nitrate and the evolution of nitrate contamination in groundwater and to rivers is computed by the model NEWSAM. This modelling chain is a valuable tool to predict the evolution of crop productivity and nitrate contamination according to various scenarios modifying farming practices and/or climatic changes. Data for the period 1970-2000 are used to simulate the past evolution of nitrogen contamination. The method has been validated using available data bases of nitrate concentrations in the three main aquifers of the Paris basin (Oligocene, Eocene and chalk). The approach has then been used to predict the future evolution of nitrogen contamination up to 2015. A statistical approach allowed estimating the probability of transgression of different concentration thresholds in various areas in the basin. The model is also used to evaluate the cost of the damage resulting of the treatment of drinking water at the scale of a groundwater management unit in the Seine river basin.

Evaluation of a Soil Moisture Data Assimilation System Over West Africa

NASA Astrophysics Data System (ADS)

Bolten, J. D.; Crow, W.; Zhan, X.; Jackson, T.; Reynolds, C.

2009-05-01

A crucial requirement of global crop yield forecasts by the U.S. Department of Agriculture (USDA) International Production Assessment Division (IPAD) is the regional characterization of surface and sub-surface soil moisture. However, due to the spatial heterogeneity and dynamic nature of precipitation events and resulting soil moisture, accurate estimation of regional land surface-atmosphere interactions based sparse ground measurements is difficult. IPAD estimates global soil moisture using daily estimates of minimum and maximum temperature and precipitation applied to a modified Palmer two-layer soil moisture model which calculates the daily amount of soil moisture withdrawn by evapotranspiration and replenished by precipitation. We attempt to improve upon the existing system by applying an Ensemble Kalman filter (EnKF) data assimilation system to integrate surface soil moisture retrievals from the NASA Advanced Microwave Scanning Radiometer (AMSR-E) into the USDA soil moisture model. This work aims at evaluating the utility of merging satellite-retrieved soil moisture estimates with the IPAD two-layer soil moisture model used within the DBMS. We present a quantitative analysis of the assimilated soil moisture product over West Africa (9°N- 20°N; 20°W-20°E). This region contains many key agricultural areas and has a high agro- meteorological gradient from desert and semi-arid vegetation in the North, to grassland, trees and crops in the South, thus providing an ideal location for evaluating the assimilated soil moisture product over multiple land cover types and conditions. A data denial experimental approach is utilized to isolate the added utility of integrating remotely-sensed soil moisture by comparing assimilated soil moisture results obtained using (relatively) low-quality precipitation products obtained from real-time satellite imagery to baseline model runs forced with higher quality rainfall. An analysis of root-zone anomalies for each model simulation suggests that the assimilation of AMSR-E surface soil moisture retrievals can add significant value to USDA root-zone predictions derived from real-time satellite precipitation products.

From model to crop: functional analysis of a STAY-GREEN gene in the model legume Medicago truncatula and effective use of the gene for alfalfa improvement.

PubMed

Zhou, Chuanen; Han, Lu; Pislariu, Catalina; Nakashima, Jin; Fu, Chunxiang; Jiang, Qingzhen; Quan, Li; Blancaflor, Elison B; Tang, Yuhong; Bouton, Joseph H; Udvardi, Michael; Xia, Guangmin; Wang, Zeng-Yu

2011-11-01

Medicago truncatula has been developed into a model legume. Its close relative alfalfa (Medicago sativa) is the most widely grown forage legume crop in the United States. By screening a large population of M. truncatula mutants tagged with the transposable element of tobacco (Nicotiana tabacum) cell type1 (Tnt1), we identified a mutant line (NF2089) that maintained green leaves and showed green anthers, central carpels, mature pods, and seeds during senescence. Genetic and molecular analyses revealed that the mutation was caused by Tnt1 insertion in a STAY-GREEN (MtSGR) gene. Transcript profiling analysis of the mutant showed that loss of the MtSGR function affected the expression of a large number of genes involved in different biological processes. Further analyses revealed that SGR is implicated in nodule development and senescence. MtSGR expression was detected across all nodule developmental zones and was higher in the senescence zone. The number of young nodules on the mutant roots was higher than in the wild type. Expression levels of several nodule senescence markers were reduced in the sgr mutant. Based on the MtSGR sequence, an alfalfa SGR gene (MsSGR) was cloned, and transgenic alfalfa lines were produced by RNA interference. Silencing of MsSGR led to the production of stay-green transgenic alfalfa. This beneficial trait offers the opportunity to produce premium alfalfa hay with a more greenish appearance. In addition, most of the transgenic alfalfa lines retained more than 50% of chlorophylls during senescence and had increased crude protein content. This study illustrates the effective use of knowledge gained from a model system for the genetic improvement of an important commercial crop.

From Model to Crop: Functional Analysis of a STAY-GREEN Gene in the Model Legume Medicago truncatula and Effective Use of the Gene for Alfalfa Improvement1[W][OA

PubMed Central

Zhou, Chuanen; Han, Lu; Pislariu, Catalina; Nakashima, Jin; Fu, Chunxiang; Jiang, Qingzhen; Quan, Li; Blancaflor, Elison B.; Tang, Yuhong; Bouton, Joseph H.; Udvardi, Michael; Xia, Guangmin; Wang, Zeng-Yu

2011-01-01

Medicago truncatula has been developed into a model legume. Its close relative alfalfa (Medicago sativa) is the most widely grown forage legume crop in the United States. By screening a large population of M. truncatula mutants tagged with the transposable element of tobacco (Nicotiana tabacum) cell type1 (Tnt1), we identified a mutant line (NF2089) that maintained green leaves and showed green anthers, central carpels, mature pods, and seeds during senescence. Genetic and molecular analyses revealed that the mutation was caused by Tnt1 insertion in a STAY-GREEN (MtSGR) gene. Transcript profiling analysis of the mutant showed that loss of the MtSGR function affected the expression of a large number of genes involved in different biological processes. Further analyses revealed that SGR is implicated in nodule development and senescence. MtSGR expression was detected across all nodule developmental zones and was higher in the senescence zone. The number of young nodules on the mutant roots was higher than in the wild type. Expression levels of several nodule senescence markers were reduced in the sgr mutant. Based on the MtSGR sequence, an alfalfa SGR gene (MsSGR) was cloned, and transgenic alfalfa lines were produced by RNA interference. Silencing of MsSGR led to the production of stay-green transgenic alfalfa. This beneficial trait offers the opportunity to produce premium alfalfa hay with a more greenish appearance. In addition, most of the transgenic alfalfa lines retained more than 50% of chlorophylls during senescence and had increased crude protein content. This study illustrates the effective use of knowledge gained from a model system for the genetic improvement of an important commercial crop. PMID:21957014

Differentiating Wheat Genotypes by Bayesian Hierarchical Nonlinear Mixed Modeling of Wheat Root Density.

PubMed

Wasson, Anton P; Chiu, Grace S; Zwart, Alexander B; Binns, Timothy R

2017-01-01

Ensuring future food security for a growing population while climate change and urban sprawl put pressure on agricultural land will require sustainable intensification of current farming practices. For the crop breeder this means producing higher crop yields with less resources due to greater environmental stresses. While easy gains in crop yield have been made mostly "above ground," little progress has been made "below ground"; and yet it is these root system traits that can improve productivity and resistance to drought stress. Wheat pre-breeders use soil coring and core-break counts to phenotype root architecture traits, with data collected on rooting density for hundreds of genotypes in small increments of depth. The measured densities are both large datasets and highly variable even within the same genotype, hence, any rigorous, comprehensive statistical analysis of such complex field data would be technically challenging. Traditionally, most attributes of the field data are therefore discarded in favor of simple numerical summary descriptors which retain much of the high variability exhibited by the raw data. This poses practical challenges: although plant scientists have established that root traits do drive resource capture in crops, traits that are more randomly (rather than genetically) determined are difficult to breed for. In this paper we develop a hierarchical nonlinear mixed modeling approach that utilizes the complete field data for wheat genotypes to fit, under the Bayesian paradigm, an "idealized" relative intensity function for the root distribution over depth. Our approach was used to determine heritability : how much of the variation between field samples was purely random vs. being mechanistically driven by the plant genetics? Based on the genotypic intensity functions, the overall heritability estimate was 0.62 (95% Bayesian confidence interval was 0.52 to 0.71). Despite root count profiles that were statistically very noisy, our approach led to denoised profiles which exhibited rigorously discernible phenotypic traits. Profile-specific traits could be representative of a genotype, and thus, used as a quantitative tool to associate phenotypic traits with specific genotypes. This would allow breeders to select for whole root system distributions appropriate for sustainable intensification, and inform policy for mitigating crop yield risk and food insecurity.

Effects of Management Practices on Meloidogyne incognita and Snap Bean Yield.

PubMed

Smittle, D A; Johnson, A W

1982-01-01

Phenamiphos applied at 6.7 kg ai/ha through a solid set or a center pivot irrigation system with 28 mm of water effectively controlled root-knot nematodes, Meloidogyne incognita, and resulted in greater snap bean growth and yields irrespective of growing season, tillage method, or cover crop system. The percentage yield increases attributed to this method of M. incognita control over nontreated controls were 45% in the spring crop, and 90% and 409% in the fall crops following winter rye and fallow, respectively. Root galling was not affected by tillage systems or cover crop, but disk tillage resulted in over 50% reduction in bean yield compared with yields from the subsoil-bed tillage system.

A Bayesian approach to infer nitrogen loading rates from crop and land-use types surrounding private wells in the Central Valley, California

NASA Astrophysics Data System (ADS)

Ransom, Katherine M.; Bell, Andrew M.; Barber, Quinn E.; Kourakos, George; Harter, Thomas

2018-05-01

This study is focused on nitrogen loading from a wide variety of crop and land-use types in the Central Valley, California, USA, an intensively farmed region with high agricultural crop diversity. Nitrogen loading rates for several crop types have been measured based on field-scale experiments, and recent research has calculated nitrogen loading rates for crops throughout the Central Valley based on a mass balance approach. However, research is lacking to infer nitrogen loading rates for the broad diversity of crop and land-use types directly from groundwater nitrate measurements. Relating groundwater nitrate measurements to specific crops must account for the uncertainty about and multiplicity in contributing crops (and other land uses) to individual well measurements, and for the variability of nitrogen loading within farms and from farm to farm for the same crop type. In this study, we developed a Bayesian regression model that allowed us to estimate land-use-specific groundwater nitrogen loading rate probability distributions for 15 crop and land-use groups based on a database of recent nitrate measurements from 2149 private wells in the Central Valley. The water and natural, rice, and alfalfa and pasture groups had the lowest median estimated nitrogen loading rates, each with a median estimate below 5 kg N ha-1 yr-1. Confined animal feeding operations (dairies) and citrus and subtropical crops had the greatest median estimated nitrogen loading rates at approximately 269 and 65 kg N ha-1 yr-1, respectively. In general, our probability-based estimates compare favorably with previous direct measurements and with mass-balance-based estimates of nitrogen loading. Nitrogen mass-balance-based estimates are larger than our groundwater nitrate derived estimates for manured and nonmanured forage, nuts, cotton, tree fruit, and rice crops. These discrepancies are thought to be due to groundwater age mixing, dilution from infiltrating river water, or denitrification between the time when nitrogen leaves the root zone (point of reference for mass-balance-derived loading) and the time and location of groundwater measurement.

Farming system context drives the value of deep wheat roots in semi-arid environments

PubMed Central

Lilley, Julianne M.; Kirkegaard, John A.

2016-01-01

The capture of subsoil water by wheat roots can make a valuable contribution to grain yield on deep soils. More extensive root systems can capture more water, but leave the soil in a drier state, potentially limiting water availability to subsequent crops. To evaluate the importance of these legacy effects, a long-term simulation analysis at eight sites in the semi-arid environment of Australia compared the yield of standard wheat cultivars with cultivars that were (i) modified to have root systems which extract more water at depth and/or (ii) sown earlier to increase the duration of the vegetative period and hence rooting depth. We compared simulations with and without annual resetting of soil water to investigate the legacy effects of drier subsoils related to modified root systems. Simulated mean yield benefits from modified root systems declined from 0.1–0.6 t ha−1 when annually reset, to 0–0.2 t ha−1 in the continuous simulation due to a legacy of drier soils (mean 0–32mm) at subsequent crop sowing. For continuous simulations, predicted yield benefits of >0.2 t ha−1 from more extensive root systems were rare (3–10% of years) at sites with shallow soils (<1.0 m), but occurred in 14–44% of years at sites with deeper soils (1.6–2.5 m). Earlier sowing had a larger impact than modified root systems on water uptake (14–31 vs 2–17mm) and mean yield increase (up to 0.7 vs 0–0.2 t ha−1) and the benefits occurred on deep and shallow soils and in more years (9–79 vs 3–44%). Increasing the proportion of crops in the sequence which dry the subsoil extensively has implications for the farming system productivity, and the crop sequence must be managed tactically to optimize overall system benefits. PMID:26976814

Farming system context drives the value of deep wheat roots in semi-arid environments.

PubMed

Lilley, Julianne M; Kirkegaard, John A

2016-06-01

The capture of subsoil water by wheat roots can make a valuable contribution to grain yield on deep soils. More extensive root systems can capture more water, but leave the soil in a drier state, potentially limiting water availability to subsequent crops. To evaluate the importance of these legacy effects, a long-term simulation analysis at eight sites in the semi-arid environment of Australia compared the yield of standard wheat cultivars with cultivars that were (i) modified to have root systems which extract more water at depth and/or (ii) sown earlier to increase the duration of the vegetative period and hence rooting depth. We compared simulations with and without annual resetting of soil water to investigate the legacy effects of drier subsoils related to modified root systems. Simulated mean yield benefits from modified root systems declined from 0.1-0.6 t ha(-1) when annually reset, to 0-0.2 t ha(-1) in the continuous simulation due to a legacy of drier soils (mean 0-32mm) at subsequent crop sowing. For continuous simulations, predicted yield benefits of >0.2 t ha(-1) from more extensive root systems were rare (3-10% of years) at sites with shallow soils (<1.0 m), but occurred in 14-44% of years at sites with deeper soils (1.6-2.5 m). Earlier sowing had a larger impact than modified root systems on water uptake (14-31 vs 2-17mm) and mean yield increase (up to 0.7 vs 0-0.2 t ha(-1)) and the benefits occurred on deep and shallow soils and in more years (9-79 vs 3-44%). Increasing the proportion of crops in the sequence which dry the subsoil extensively has implications for the farming system productivity, and the crop sequence must be managed tactically to optimize overall system benefits. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Neural Network-Based Retrieval of Surface and Root Zone Soil Moisture using Multi-Frequency Remotely-Sensed Observations

NASA Astrophysics Data System (ADS)

Hamed Alemohammad, Seyed; Kolassa, Jana; Prigent, Catherine; Aires, Filipe; Gentine, Pierre

2017-04-01

Knowledge of root zone soil moisture is essential in studying plant's response to different stress conditions since plant photosynthetic activity and transpiration rate are constrained by the water available through their roots. Current global root zone soil moisture estimates are based on either outputs from physical models constrained by observations, or assimilation of remotely-sensed microwave-based surface soil moisture estimates with physical model outputs. However, quality of these estimates are limited by the accuracy of the model representations of physical processes (such as radiative transfer, infiltration, percolation, and evapotranspiration) as well as errors in the estimates of the surface parameters. Additionally, statistical approaches provide an alternative efficient platform to develop root zone soil moisture retrieval algorithms from remotely-sensed observations. In this study, we present a new neural network based retrieval algorithm to estimate surface and root zone soil moisture from passive microwave observations of SMAP satellite (L-band) and AMSR2 instrument (X-band). SMAP early morning observations are ideal for surface soil moisture retrieval. AMSR2 mid-night observations are used here as an indicator of plant hydraulic properties that are related to root zone soil moisture. The combined observations from SMAP and AMSR2 together with other ancillary observations including the Solar-Induced Fluorescence (SIF) estimates from GOME-2 instrument provide necessary information to estimate surface and root zone soil moisture. The algorithm is applied to observations from the first 18 months of SMAP mission and retrievals are validated against in-situ observations and other global datasets.

Root biomass, root/shoot ratio, and soil water content under perennial grasses with different nitrogen rates

USDA-ARS?s Scientific Manuscript database

Roots help in soil water and nutrient uptake and provide C input for soil C sequestration, but information on root biomass of bioenergy perennial grasses is lacking. Root/shoot ratios are used to estimate crop root biomass and C inputs, but the values for perennial grasses are also scanty. We examin...

Microscopic characterization of orchid mycorrhizal fungi: Scleroderma as a putative novel orchid mycorrhizal fungus of Vanilla in different crop systems.

PubMed

González-Chávez, Ma Del Carmen A; Torres-Cruz, Terry J; Sánchez, Samantha Albarrán; Carrillo-González, Rogelio; Carrillo-López, Luis Manuel; Porras-Alfaro, Andrea

2018-02-01

Vanilla is an orchid of economic importance widely cultivated in tropical regions and native to Mexico. We sampled three species of Vanilla (V. planifolia, V. pompona, and V. insignis) in different crop systems. We studied the effect of crop system on the abundance, type of fungi, and quality of pelotons found in the roots using light and electron microscopy and direct sequencing of mycorrhizal structures. Fungi were identified directly from pelotons obtained from terrestrial roots of vanilla plants in the flowering stage. Root samples were collected from plants in crop systems located in the Totonacapan area in Mexico (states of Puebla and Veracruz). DNA was extracted directly from 40 pelotons and amplified using ITS rRNA sequencing. Peloton-like structures were observed, presenting a combination of active pelotons characterized by abundant hyphal coils and pelotons in various stages of degradation. The most active pelotons were observed in crop systems throughout living tutors (host tree) in comparison with roots collected from dead or artificial tutors. Fungi identified directly from pelotons included Scleroderma areolatum, a common ectomycorrhizal fungus that has not been reported as a mycorrhizal symbiont in orchids. Direct amplification of pelotons also yielded common plant pathogens, including Fusarium and Pyrenophora seminiperda, especially in those sites with low colonization rates, and where large numbers of degraded pelotons were observed. This research reports for the first time the potential colonization of Vanilla by Scleroderma, as a putative orchid mycorrhizal symbiont in four sites in Mexico and the influence of crop system on mycorrhizal colonization on this orchid.

Endophytic fungi occurring in fennel, lettuce, chicory, and celery--commercial crops in southern Italy.

PubMed

D'Amico, Margherita; Frisullo, Salvatore; Cirulli, Matteo

2008-01-01

The occurrence of endophytic fungi in fennel, lettuce, chicory, and celery crops was investigated in southern Italy. A total of 186 symptomless plants was randomly collected and sampled at the stage of commercial ripeness. Fungal species of Acremonium, Alternaria, Fusarium, and Plectosporium were detected in all four crops; Plectosporium tabacinum was the most common in all crop species and surveyed sites. The effect of eight endophytic isolates (five belonging to Plectosporium tabacinum and three to three species of Acremonium) inoculated on lettuce plants grown in gnotobiosis was assessed by recording plant height, root length and dry weight, collar diameter, root necrosis, and leaf yellowing. P. tabacinum and three species of Acremonium, inoculated on gnotobiotically grown lettuce plants, showed pathogenic activity that varied with the fungal isolate. Lettuce plants inoculated with the isolates Ak of Acremonium kiliense, Ac of Acremonium cucurbitacearum, and P35 of P. tabacinum showed an increased root growth, compared to the non-inoculated control. The high frequency of P. tabacinum isolation recorded in lettuce plants collected in Bari and Metaponto, and in fennel plants from Foggia agricultural districts, suggests a relationship not only between a crop species and P. tabacinum, but also between the occurrence of the endophyte and the crop rotation history of the soil.

Annual and Perennial Alleyway Cover Crops Vary in Their Effects on Pratylenchus penetrans in Pacific Northwest Red Raspberry (Rubus idaeus)

PubMed Central

Rudolph, Rachel E.; Zasada, Inga A.; DeVetter, Lisa W.

2017-01-01

Cover crops can provide many benefits to agroecosystems, such as lessening soil erosion and increasing water infiltration. However, cover crop use is not common in established red raspberry (Rubus idaeus) fields in the Pacific Northwest. Raspberry growers are concerned about resource competition between the cover crop and raspberry crop, as well as increasing population densities of the plant-parasitic nematode Pratylenchus penetrans, which has a wide host range and has been shown to reduce raspberry plant vigor and yield. A 2-yr study was conducted in an established ‘Meeker’ raspberry field in northwest Washington to evaluate the effects of nine alleyway cover crops, mowed weed cover, and the industry standard of bare cultivated soil on P. penetrans population dynamics, raspberry yield, and fruit quality. The host status for P. penetrans of cover crops included in the field experiment, as well as Brassica juncea ‘Pacific Gold’ and Sinapis alba ‘Ida Gold’, was also evaluated in greenhouse experiments. In the field experiment, P. penetrans population densities did not increase in alleyway cover crop roots over time or in alleyway soil surrounding cover crop roots (means range from 0 to 116 P. penetrans/100 g of soil) compared with the bare cultivated control (means range from 2 to 55 P. penetrans/100 g of soil). Pratylenchus penetrans populations did not increase over time in raspberry grown adjacent to alleyways with cover crops (means range from 1,081 to 6,120 P. penetrans/g of root) compared with those grown adjacent to bare cultivated soil alleyways (means range from 2,391 to 5,536 P. penetrans/g of root). Raspberry grown adjacent to bare cultivated soil did not have significantly higher yield or fruit quality than raspberry grown adjacent to cover crops in either year of the experiment. In the greenhouse assays, ‘Norwest 553’ wheat and a perennial ryegrass mix were poor hosts for P. penetrans, whereas ‘Nora’ and ‘TAM 606’ oat and ‘Pacific Gold’ and ‘Ida Gold’ mustard were good hosts. These results support the idea that the potential benefits of alleyway cover crops outweigh the potential risk of increasing P. penetrans population densities and do not compromise raspberry yield or fruit quality. PMID:29353934

Medial meniscus anatomy-from basic science to treatment.

PubMed

Śmigielski, Robert; Becker, Roland; Zdanowicz, Urszula; Ciszek, Bogdan

2015-01-01

This paper focuses on the anatomical attachment of the medial meniscus. Detailed anatomical dissections have been performed and illustrated. Five zones can be distinguished in regard to the meniscus attachments anatomy: zone 1 (of the anterior root), zone 2 (anteromedial zone), zone 3 (the medial zone), zone 4 (the posterior zone) and the zone 5 (of the posterior root). The understanding of the meniscal anatomy is especially crucial for meniscus repair but also for correct fixation of the anterior and posterior horn of the medial meniscus.

Parallel evolution of storage roots in Morning Glories (Convolvulaceae)

USDA-ARS?s Scientific Manuscript database

Storage roots are an ecologically and agriculturally important plant trait. In morning glories, storage roots are well characterized in the crop species sweetpotato. Storage roots have evolved numerous times across the morning glory family. This study aims to understand whether this was through para...

Rooting out Defense Mechanisms in Wheat against Plant Parasitic Nematodes

USDA-ARS?s Scientific Manuscript database

Root-lesion nematodes (Pratylenchus spp.) are soil borne pathogens of many important agricultural crops including wheat. Pratylenchus invade root cells and feed using a stylet, resulting in cell death. Common signs of Pratylenchus damage are root lesions, girdling, and lack of lateral branching. ...

Aquaporins and root water uptake

USDA-ARS?s Scientific Manuscript database

Water is one of the most critical resources limiting plant growth and crop productivity, and root water uptake is an important aspect of plant physiology governing plant water use and stress tolerance. Pathways of root water uptake are complex and are affected by root structure and physiological res...

Growth Chambers on the International Space Station for Large Plants

NASA Technical Reports Server (NTRS)

Massa, G. D.; Wheeler, R. M.; Morrow, R. C.; Levine, H. G.

2016-01-01

The International Space Station (ISS) now has platforms for conducting research on horticultural plant species under LED lighting, and those capabilities continue to expand. The 'Veggie' vegetable production system was deployed to the ISS as an applied research platform for food production in space. Veggie is capable of growing a wide array of horticultural crops. It was designed for low power usage, low launch mass and stowage volume, and minimal crew time requirements. The Veggie flight hardware consists of a light cap containing red (630 nm), blue, (455 nm) and green (530 nm) LEDs. Interfacing with the light cap is an extendable bellows/baseplate for enclosing the plant canopy. A second large plant growth chamber, the Advanced Plant Habitat (APH), is will fly to the ISS in 2017. APH will be a fully controllable environment for high-quality plant physiological research. APH will control light (quality, level, and timing), temperature, CO2, relative humidity, and irrigation, while scrubbing any cabin or plant-derived ethylene and other volatile organic compounds. Additional capabilities include sensing of leaf temperature and root zone moisture, root zone temperature, and oxygen concentration. The light cap will have red (630 nm), blue (450 nm), green (525 nm), far red (730 nm) and broad spectrum white LEDs (4100K). There will be several internal cameras (visible and IR) to monitor and record plant growth and operations. Veggie and APH are available for research proposals.

In-situ atrazine biodegradation dynamics in wheat (Triticum) crops under variable hydrologic regime.

PubMed

la Cecilia, Daniele; Maggi, Federico

2017-08-01

A comprehensive biodegradation reaction network of atrazine (ATZ) and its 18 byproducts was coupled to the nitrogen cycle and integrated in a computational solver to assess the in-situ biodegradation effectiveness and leaching along a 5m deep soil cultivated with wheat in West Wyalong, New South Wales, Australia. Biodegradation removed 97.7% of 2kg/ha ATZ yearly applications in the root zone, but removal substantially decreased at increasing depths; dechlorination removed 79% of ATZ in aerobic conditions and 18% in anaerobic conditions, whereas deethylation and oxidation removed only 0.11% and 0.15% of ATZ, respectively. The residual Cl mass fraction in ATZ and 4 byproducts was 2.4% of the applied mass. ATZ half-life ranged from 150 to 247days in the soil surface. ATZ reached 5m soil depth within 200years and its concentration increased from 1×10 -6 to 4×10 -6 mg/kg dry-soil over time. The correlation between ATZ specific biomass degradation affinity Φ 0 and half-life t 1/2 , although relatively uncertain for both hydrolyzing and oxidizing bacteria, suggested that microorganisms with high Φ 0 led to low ATZ t 1/2 . Greater ATZ applications were balanced by small nonlinear increments of ATZ biodegraded fraction within the root zone and therefore less ATZ leached into the shallow aquifer. Copyright © 2017 Elsevier B.V. All rights reserved.

In-situ atrazine biodegradation dynamics in wheat (Triticum) crops under variable hydrologic regime

NASA Astrophysics Data System (ADS)

la Cecilia, Daniele; Maggi, Federico

2017-08-01

A comprehensive biodegradation reaction network of atrazine (ATZ) and its 18 byproducts was coupled to the nitrogen cycle and integrated in a computational solver to assess the in-situ biodegradation effectiveness and leaching along a 5 m deep soil cultivated with wheat in West Wyalong, New South Wales, Australia. Biodegradation removed 97.7% of 2 kg/ha ATZ yearly applications in the root zone, but removal substantially decreased at increasing depths; dechlorination removed 79% of ATZ in aerobic conditions and 18% in anaerobic conditions, whereas deethylation and oxidation removed only 0.11% and 0.15% of ATZ, respectively. The residual Cl mass fraction in ATZ and 4 byproducts was 2.4% of the applied mass. ATZ half-life ranged from 150 to 247 days in the soil surface. ATZ reached 5 m soil depth within 200 years and its concentration increased from 1 ×10-6 to 4 ×10-6 mg/kgdry-soil over time. The correlation between ATZ specific biomass degradation affinity Φ0 and half-life t1/2, although relatively uncertain for both hydrolyzing and oxidizing bacteria, suggested that microorganisms with high Φ0 led to low ATZ t1/2. Greater ATZ applications were balanced by small nonlinear increments of ATZ biodegraded fraction within the root zone and therefore less ATZ leached into the shallow aquifer.

Effect of different cover crops on C and N cycling in sorghum NT systems.

PubMed

Frasier, Ileana; Quiroga, Alberto; Noellemeyer, Elke

2016-08-15

In many no-till (NT) systems, residue input is low and fallow periods excessive, for which reasons soil degradation occurs. Cover crops could improve organic matter, biological activity, and soil structure. In order to study changes in soil carbon, nitrogen and microbial biomass a field experiment (2010-2012) was set up with sorghum (Sorghum bicolor Moench.) monoculture and with cover crops. Treatments were control (NT with bare fallow), rye (Secale cereale L.) (R), rye with nitrogen fertilization (R+N), vetch (Vicia villosa Roth.) (V), and rye-vetch mixture (VR) cover crops. A completely randomized block design with 4 replicates was used. Soil was sampled once a year at 0.06 and 0.12m depth for total C, microbial biomass carbon (MBC) and-nitrogen (MBN) determinations. Shoot and root biomass of sorghum and cover crops, litter biomass, and their respective carbon and nitrogen contents were determined. Soil temperatures at 0.06 and 0.12m depth, volumetric water contents and nitrate concentrations were determined at sowing, and harvest of each crop, and during sorghum's vegetative phase. NT led to a small increase in MBC and MBN, despite low litter and root biomass residue. Cover crops increased litter, root biomass, total C, MBC, and MBN. Relationships between MBC, MBN, and root-C and -N adjusted to logistic models (R(2)=0.61 and 0.43 for C and N respectively). Litter cover improved soil moisture to 45-50% water filled pore space and soil temperatures not exceeding 25°C during the warmest month. Microbial biomass stabilized at 20.1gCm(-2) and 1.9gNm(-2) in the upper 0.06m. Soil litter disappearance was a good indicator of mineral N availability. These findings support the view that cover crops, specifically legumes in NT systems can increase soil ecosystem services related to water and carbon storage, habitat for biodiversity, and nutrient availability. Copyright © 2016 Elsevier B.V. All rights reserved.

Plant responses to heterogeneous salinity: growth of the halophyte Atriplex nummularia is determined by the root-weighted mean salinity of the root zone

PubMed Central

Bazihizina, Nadia

2012-01-01

Soil salinity is generally spatially heterogeneous, but our understanding of halophyte physiology under such conditions is limited. The growth and physiology of the dicotyledonous halophyte Atriplex nummularia was evaluated in split-root experiments to test whether growth is determined by: (i) the lowest; (ii) the highest; or (iii) the mean salinity of the root zone. In two experiments, plants were grown with uniform salinities or horizontally heterogeneous salinities (10–450mM NaCl in the low-salt side and 670mM in the high-salt side, or 10mM NaCl in the low-salt side and 500–1500mM in the high-salt side). The combined data showed that growth and gas exchange parameters responded most closely to the root-weighted mean salinity rather than to the lowest, mean, or highest salinity in the root zone. In contrast, midday shoot water potentials were determined by the lowest salinity in the root zone, consistent with most water being taken from the least negative water potential source. With uniform salinity, maximum shoot growth was at 120–230mM NaCl; ~90% of maximum growth occurred at 10mM and 450mM NaCl. Exposure of part of the roots to 1500mM NaCl resulted in an enhanced (+40%) root growth on the low-salt side, which lowered root-weighted mean salinity and enabled the maintenance of shoot growth. Atriplex nummularia grew even with extreme salinity in part of the roots, as long as the root-weighted mean salinity of the root zone was within the 10–450mM range. PMID:23125356

Plant responses to heterogeneous salinity: growth of the halophyte Atriplex nummularia is determined by the root-weighted mean salinity of the root zone.

PubMed

Bazihizina, Nadia; Barrett-Lennard, Edward G; Colmer, Timothy D

2012-11-01

Soil salinity is generally spatially heterogeneous, but our understanding of halophyte physiology under such conditions is limited. The growth and physiology of the dicotyledonous halophyte Atriplex nummularia was evaluated in split-root experiments to test whether growth is determined by: (i) the lowest; (ii) the highest; or (iii) the mean salinity of the root zone. In two experiments, plants were grown with uniform salinities or horizontally heterogeneous salinities (10-450 mM NaCl in the low-salt side and 670 mM in the high-salt side, or 10 mM NaCl in the low-salt side and 500-1500 mM in the high-salt side). The combined data showed that growth and gas exchange parameters responded most closely to the root-weighted mean salinity rather than to the lowest, mean, or highest salinity in the root zone. In contrast, midday shoot water potentials were determined by the lowest salinity in the root zone, consistent with most water being taken from the least negative water potential source. With uniform salinity, maximum shoot growth was at 120-230 mM NaCl; ~90% of maximum growth occurred at 10 mM and 450 mM NaCl. Exposure of part of the roots to 1500 mM NaCl resulted in an enhanced (+40%) root growth on the low-salt side, which lowered root-weighted mean salinity and enabled the maintenance of shoot growth. Atriplex nummularia grew even with extreme salinity in part of the roots, as long as the root-weighted mean salinity of the root zone was within the 10-450 mM range.

Martian base agriculture: The effect of low gravity on water flow, nutrient cycles, and microbial biomass dynamics

NASA Astrophysics Data System (ADS)

Maggi, Federico; Pallud, Céline

2010-11-01

The latest advances in bioregenerative strategies for long-term life support in extraterrestrial outposts such as on Mars have indicated soil-based cropping as an effective approach for waste decomposition, carbon sequestration, oxygen production, and water biofiltration as compared to hydroponics and aeroponics cropping. However, it is still unknown if cropping using soil systems could be sustainable in a Martian greenhouse under a gravity of 0.38 g. The most challenging aspects are linked to the gravity-induced soil water flow; because water is crucial in driving nutrient and oxygen transport in both liquid and gaseous phases, a gravitational acceleration lower than g = 9.806 m s -2 could lead to suffocation of microorganisms and roots, with concomitant emissions of toxic gases. The effect of Martian gravity on soil processes was investigated using a highly mechanistic model previously tested for terrestrial crops that couples soil hydraulics and nutrient biogeochemistry. Net leaching of NO3- solute, gaseous fluxes of NH 3, CO 2, N 2O, NO and N 2, depth concentrations of O 2, CO 2 and dissolved organic carbon (DOC), and pH in the root zone were calculated for a bioregenerative cropping unit under gravitational acceleration of Earth and for its homologous on Mars, but under 0.38 g. The two cropping units were treated with the same fertilizer type and rate, and with the same irrigation regime, but under different initial soil moisture content. Martian gravity reduced water and solute leaching by about 90% compared to Earth. This higher water holding capacity in soil under Martian gravity led to moisture content and nutrient concentrations that favoured the metabolism of various microbial functional groups, whose density increased by 5-10% on Mars as compared to Earth. Denitrification rates became substantially more important than on Earth and ultimately resulted in 60%, 200% and 1200% higher emissions of NO, N 2O and N 2 gases, respectively. Similarly, O 2 and DOC were consumed more rapidly in the Martian soil and resulted in about 10% increase in CO 2 emissions. More generally, Martian cropping would require 90% less water for irrigation than on Earth, being therefore favourable for water recycling treatment; in addition, a substantially lower nutrient supply from external sources such as fertilizers would not compromise nutrient delivery to soil microorganisms, but would reduce the large N gas emissions observed in this study.

The Dynamics of Sediment Oxygenation in Marsh Rhizospheres

NASA Astrophysics Data System (ADS)

Koop-Jakobsen, K.

2014-12-01

Many marsh grasses are capable of internal oxygen transport from aboveground sources to belowground roots and rhizomes, where oxygen may leak across the rhizodermis and oxygenate the surrounding sediment. In the field, the extent of sediment oxygenation in marshes was assessed in the rhizosphere of the marsh grass; Spartina anglica, inserting 70 optical fiber oxygen sensors into the rhizosphere. Two locations with S. anglica growing in different sediment types were investigated. No oxygen was detected in the rhizospheres indicating that belowground sediment oxygenation in S. anglica has a limited effect on the bulk anoxic sediment and is restricted to sediment in the immediate vicinity of the roots. In the laboratory, the presence of 1.5mm wide and 16mm long oxic root zones was demonstrated around root tips of S. anglica growing in permeable sandy sediment using planar optodes recording 2D-images of the oxygen distribution. Oxic root zones in S. anglica growing in tidal flat deposits were significantly smaller. The size of oxic roots zones was highly dynamic and affected by tidal inundations as well as light availability. Atmospheric air was the primary oxygen source for belowground sediment oxygenation, whereas photosynthetic oxygen production only played a minor role for the size of the oxic root zones during air-exposure of the aboveground biomass. During tidal inundations (1.5 h) completely submerging the aboveground biomass cutting off access to atmospheric oxygen, the size of oxic root zones were reduced significantly in the light and oxic root zones were completely eliminated in darkness. Sediment oxygenation in the rhizospheres of marsh grasses is of significant importance for marshes ability to retain inorganic nitrogen before it reaches the coastal waters. The presence of oxic roots zones promotes coupled nitrification-denitrification at depth in the sediment, which can account for more than 80% of the total denitrification in marshes.

Root-Knot Nematode Management in Double-Cropped Plasticulture Vegetables

PubMed Central

Desaeger, J. A.; Csinos, A. S.

2006-01-01

Combination treatments of chisel-injected fumigants (methyl bromide, 1,3-D, metam sodium, and chloropicrin) on a first crop, followed by drip-applied fumigants (metam sodium and 1,3-D ± chloropicrin) on a second crop, with and without oxamyl drip applications were evaluated for control of Meloidogyne incognita in three different tests (2002 to 2004) in Tifton, GA. First crops were eggplant or tomato, and second crops were cantaloupe, squash, or jalapeno pepper. Double-cropped vegetables suffered much greater root-knot nematode (RKN) pressure than first crops, and almost-total yield loss occurred when second crops received no nematicide treatment. On a first crop of eggplant, all fumigants provided good nematode control and average yield increases of 10% to 15 %. On second crops, higher application rates and fumigant combinations (metam sodium and 1,3-D ± chloropicrin) improved RKN control and increased yields on average by 20% to 35 % compared to the nonfumigated control. Oxamyl increased yields of the first crop in 2003 on average by 10% to 15% but had no effect in 2004 when RKN failed to establish itself. On double-cropped squash in 2003, oxamyl following fumigation provided significant additional reduction in nematode infection and increased squash yields on average by 30% to 75%. PMID:19259431

Nitrogen Fertilization Effects on Productivity and Nitrogen Loss in Three Grass-Based Perennial Bioenergy Cropping Systems

DOE PAGES

Duran, Brianna E. L.; Duncan, David S.; Oates, Lawrence G.; ...

2016-03-18

Nitrogen (N) fertilization can greatly improve plant productivity but needs to be carefully managed to avoid harmful environmental impacts. Nutrient management guidelines aimed at reducing harmful forms of N loss such as nitrous oxide (N 2O) emissions and nitrate (NO 3 -) leaching have been tailored for many cropping systems. The developing bioenergy industry is likely to make use of novel cropping systems, such as polycultures of perennial species, for which we have limited nutrient management experience. We studied how a switchgrass (Panicum virgatum) monoculture, a 5-species native grass mixture and an 18- species restored prairie responded to annual fertilizermore » applications of 56 kg N ha -1 in a fieldscale agronomic trial in south-central Wisconsin over a 2-year period.We observed greater fertilizer-induced N 2O emissions and sub-rooting zone NO 3 - concentrations in the switchgrass monoculture than in either polyculture. Fertilization increased aboveground net primary productivity in the polycultures, but not in the switchgrass monoculture. Switchgrass was generally more productive, while the two polycultures did not differ from each other in productivity or N loss. In conclusion, our results highlight differences between polycultures and a switchgrass monoculture in responding to N fertilization.« less

From experiments to simulations: tracing Na+ distribution around roots under different transpiration rates and salinity levels

NASA Astrophysics Data System (ADS)

Perelman, Adi; Jorda, Helena; Vanderborght, Jan; Pohlmeier, Andreas; Lazarovitch, Naftali

2017-04-01

When salinity increases beyond a certain threshold it will result in reduced crop yield at a fixed rate, according to Maas and Hoffman model (1976). Thus, there is a great importance of predicting salinization and its impact on crops. Current models do not consider the impact of environmental conditions on plants salt tolerance, even though these conditions are affecting plant water uptake and therefore salt accumulation around the roots. Different factors, such as transpiration rates, can influence the plant sensitivity to salinity by influencing salt concentrations around the roots. Better parametrization of a model can help improving predicting the real effects of salinity on crop growth and yield. The aim of this research is to study Na+ distribution around roots at different scales using different non-invasive methods, and study how this distribution is being affected by transpiration rate and plant water uptake. Results from tomato plants growing on Rhizoslides (capillary paper growth system), show that Na+ concentration is higher at the root- substrate interface, compared with the bulk. Also, Na+ accumulation around the roots decreased under low transpiration rate, which is supporting our hypothesis. Additionally, Rhizoslides enable to study roots' growth rate and architecture under different salinity levels. Root system architecture was retrieved from photos taken during the experiment and enabled us to incorporate real root systems into a simulation. To observe the correlation of root system architectures and Na+ distribution in three dimensions, we used magnetic resonance imaging (MRI). MRI provides fine resolution of Na+ accumulation around a single root without disturbing the root system. With time, Na+ was accumulating only where roots were found in the soil and later on around specific roots. These data are being used for model calibration, which is expected to predict root water uptake in saline soils for different climatic conditions and different soil water availabilities.

Cover crop and CO2 emissions

USDA-ARS?s Scientific Manuscript database

Agricultural land management practices account for about 50% of soil organic carbon (SOC) loss. Restoring SOC is important to soil productivity and fertility. Management strategies to rebuild SOC include addition of manure or other organic amendments, increasing root biomass from crops, leaving crop...

The locations and amounts of endogenous ions and elements in the cap and elongating zone of horizontally oriented roots of Zea mays L.: an electron-probe EDS study

NASA Technical Reports Server (NTRS)

Moore, R.; Cameron, I. L.; Hunter, K. E.; Olmos, D.; Smith, N. K.

1987-01-01

We used quantitative electron-probe energy-dispersive x-ray microanalysis to localize endogenous Na, Cl, K, P, S, Mg and Ca in cryofixed and freeze-dried cryosections of the cap (i.e. the putative site of graviperception) and elongating zone (i.e. site of gravicurvature) of horizontally oriented roots of Zea mays. Ca, Na, Cl, K and Mg accumulate along the lower side of caps of horizontally oriented roots. The most dramatic asymmetries of these ions occur in the apoplast, especially the mucilage. We could not detect any significant differences in the concentrations of these ions in the central cytoplasm of columella cells along the upper and lower sides of caps of horizontally-oriented roots. However, the increased amounts of Na, Cl, K and Mg in the longitudinal walls of columella cells along the lower side of the cap suggest that these ions may move down through the columella tissue of horizontally-oriented roots. Ca also accumulates (largely in the mucilage) along the lower side of the elongating zone of horizontally-oriented roots, while Na, P, Cl and K tend to accumulate along the upper side of the elongating zone. Of these ions, only K increases in concentration in the cytoplasm and longitudinal walls of cortical cells in the upper vs lower sides of the elongating zone. These results indicate that (1) gravity-induced asymmetries of ions differ significantly in the cap and elongating zone of graviresponding roots, (2) Ca accumulates along the lower side of the cap and elongating zone of graviresponding roots, (3) increased growth of the upper side of the elongating zone of horizontally-oriented roots correlates positively with increased amounts of K in the cytoplasm and longitudinal walls of cortical cells, and (4) the apoplast (especially the mucilage) may be an important component of the pathway via which ions move in graviresponding rots of Zea mays. These results are discussed relative to mechanisms for graviperception and gravicurvature of roots.

Root-zone temperature and nitrogen affect the yield and secondary metabolite concentration of fall- and spring-grown, high-density leaf lettuce.

PubMed

Bumgarner, Natalie R; Scheerens, Joseph C; Mullen, Robert W; Bennett, Mark A; Ling, Peter P; Kleinhenz, Matthew D

2012-01-15

Understanding the effects of temperature and nitrogen levels on key variables, particularly under field conditions during cool seasons of temperate climates, is important. Here, we document the impact of root-zone heating and nitrogen (N) fertility on the accumulation and composition of fall- and spring-grown lettuce biomass. A novel, scalable field system was employed. Direct-seeded plots containing a uniform, semi-solid, and nearly stable rooting medium were established outdoors in 2009 and 2010; each contained one of eight combinations of root-zone heating (-/+) and N fertility (0, 72, 144, and 576 mg day(-1)). Root-zone heating increased but withholding N decreased biomass accumulation in both years. Low N supplies were also associated with greater anthocyanin and total antioxidant power but lower N and phosphorus levels. Tissue chlorophyll a and vitamin C levels tracked root-zone temperature and N fertility more closely in 2009 and 2010, respectively. Experimentally imposed root-zone temperature and N levels influenced the amount and properties of fall- and spring-grown lettuce tissue. Ambient conditions, however, dictated which of these factors exerted the greatest effect on the variables measured. Collectively, the results point to the potential for gains in system sustainability and productivity, including with respect to supplying human nutritional units. Copyright © 2011 Society of Chemical Industry.

Grasses suppress shoot-borne roots to conserve water during drought

PubMed Central

Sebastian, Jose; Yee, Muh-Ching; Goudinho Viana, Willian; Rellán-Álvarez, Rubén; Feldman, Max; Priest, Henry D.; Trontin, Charlotte; Lee, Tak; Jiang, Hui; Mockler, Todd C.

2016-01-01

Many important crops are members of the Poaceae family, which develop root systems characterized by a high degree of root initiation from the belowground basal nodes of the shoot, termed the crown. Although this postembryonic shoot-borne root system represents the major conduit for water uptake, little is known about the effect of water availability on its development. Here we demonstrate that in the model C4 grass Setaria viridis, the crown locally senses water availability and suppresses postemergence crown root growth under a water deficit. This response was observed in field and growth room environments and in all grass species tested. Luminescence-based imaging of root systems grown in soil-like media revealed a shift in root growth from crown-derived to primary root-derived branches, suggesting that primary root-dominated architecture can be induced in S. viridis under certain stress conditions. Crown roots of Zea mays and Setaria italica, domesticated relatives of teosinte and S. viridis, respectively, show reduced sensitivity to water deficit, suggesting that this response might have been influenced by human selection. Enhanced water status of maize mutants lacking crown roots suggests that under a water deficit, stronger suppression of crown roots actually may benefit crop productivity. PMID:27422554

Physiological response and sulfur metabolism of the V. dahliae-infected tomato plants in tomato/potato onion companion cropping.

PubMed

Fu, Xuepeng; Li, Chunxia; Zhou, Xingang; Liu, Shouwei; Wu, Fengzhi

2016-11-03

Companion cropping with potato onions (Allium cepa var. agrogatum Don.) can enhance the disease resistance of tomato plants (Solanum lycopersicum) to Verticillium dahliae infection by increasing the expressions of genes related to disease resistance. However, it is not clear how tomato plants physiologically respond to V. dahliae infection and what roles sulfur plays in the disease-resistance. Pot experiments were performed to examine changes in the physiology and sulfur metabolism of tomato roots infected by V. dahliae under the companion cropping (tomato/potato onion). The results showed that the companion cropping increased the content of total phenol, lignin and glutathione and increased the activities of peroxidase, polyphenol oxidase and phenylalanine ammonia lyase in the roots of tomato plants. RNA-seq analysis showed that the expressions of genes involved in sulfur uptake and assimilation, and the formation of sulfur-containing defense compounds (SDCs) were up-regulated in the V. dahlia-infected tomatoes in the companion cropping. In addition, the interactions among tomato, potato onion and V. dahliae induced the expression of the high- affinity sulfate transporter gene in the tomato roots. These results suggest that sulfur may play important roles in tomato disease resistance against V. dahliae.

Microbial antagonism as a potential solution for controlling selected root pathogens of crops

NASA Astrophysics Data System (ADS)

Cooper, Sarah; Agnew, Linda; Pereg, Lily

2016-04-01

Root pathogens of crops can cause large reduction in yield, however, there is a limited range of effective methods to control such pathogens. Soilborne pathogens that infect roots often need to survive in the rhizosphere, where there is high competition from other organisms. In such hot spots of microbial activity and growth, supported by root exudates, microbes have evolved antagonistic mechanisms that give them competitive advantages in winning the limited resources. Among these mechanisms is antibiosis, with production of some significant antifungal compounds including, antibiotics, volatile organic compounds, hydrogen cyanide and lytic enzymes. Some of these mechanisms may suppress disease through controlling the growth of root pathogens. In this project we isolated various fungi and bacteria that suppress the growth of cotton pathogens in vitro. The pathogen-suppressive microbes were isolated from cotton production soils that are under different management strategies, with and without the use of organic amendments. The potential of pathogen-suppressing microbes for controlling the black root rot disease, caused by the soilborne pathogen Thielaviopsis basicola, was confirmed using soil assays. We identified isolates with potential use as inoculant for cotton production in Australia. Having isolated a diverse group of antagonistic microbes enhances the probability that some would survive well in the soil and provide an alternative approach to address the problem of root disease affecting agricultural crops.

Leaf water status and root system water flux of shortleaf pine (Pinus echinata Mill.) seedlings in relation to new root growth after transplanting

Treesearch

John C. Brissette; Jim L. Chambers

1992-01-01

Water relations and root growth of shortleaf pine (Pinus echinata Mill.) were studied four weeks after seedlings from a half-sib family had been transplanted to one of three regimes of soil water availability at a root zone temperature of either 15 or 20 °C. About one-third of the variation in new root growth was explained by the root zone...

Effects of agricultural land-management practices on water quality in northeastern Guilford County, North Carolina, 1985-90

USGS Publications Warehouse

Harned, Douglas A.

1995-01-01

The effects of selected agricultural land-management practices on water quality were assessed in a comparative study of four small basins in the Piedmont province of North Carolina. Agricultural practices, such as tillage and applications of fertilizer and pesticides, are major sources of sediment, nutrients, and pesticides in surface water, and of nutrients and pesticides in ground water. The four study basins included two adjacent row-crop fields, a mixed land-use basin, and a forested basin. One of the row-crop fields (7.4 acres) was farmed by using conservation land-management (CLM) practices, which included strip cropping, contour plowing, field borders, and grassed waterways. The other row-crop field (4.8 acres) was farmed by using standard land-management (SLM) practices, which included continuous cropping, straight-row plowing without regard to land topography, and poorly maintained waterways. The mixed land-use basin (665 acres) was monitored to compare water quality in surface water as SLM practices were converted to CLM practices during the project. The forested basin (44 acres) provided background surface-water hydrologic and chemical-quality conditions. Surface-water flow was reduced by 18 percent by CLM practices compared to surface-water flow from the SLM practices basin. The thickness of the unsaturated zone in the row-crop basins ranged from a few feet to 25 feet. Areas with thick unsaturated zones have a greater capacity to intercept and store nutrients and pesticides than do areas with thinner zones. Sediment concentrations and yields for the SLM practices basin were considerably higher than those for the other basins. The median sediment concentration in surface water for the SLM basin was 3.4 times that of the CLM basin, 8.2 times that of the mixed land-use basin, and 38.4 times that of the forested basin. The total sediment yield for the SLM basin was 2.3 times that observed for the CLM basin, 14.1 times that observed for the mixed land-use basin, and 19.5 times the yield observed for the forested basin. Nutrient concentrations in surface water from the row-crop and mixed land-use basins were higher than those measured in the forested basin and in precipitation collected near the row-crop basins. The SLM basin generally had the highest concentrations of total nitrogen, nitrite plus nitrate, total phosphorus (equivalent to the mixed land-use basin), and potassium. Nutrient concentrations in soil water and ground water were less than concentrations in surface water for the row-crop basins. Nutrient concentrations generally were at least slightly below the root zone (3-foot depth) and in ground water. Differences in nutrient yields among basins had patterns similar to those observed for nutrient concentrations. The total nitrogen yield for the SLM basin was 1.2 times the yield for the CLM basin, 1.9 times the yield for the mixed land-use basin, and 4.2 times the yield for the forested basin. The total phosphorus yield for the SLM basin was 1.7 times the yield for the CLM basin, 3.3 times the yield for the mixed land-use basin, and 7.8 times the yield for the forested basin. No significant differences in pesticide concentrations in surface water were identified between those measured in the SLM basin and those measured in the CLM basin. Significantly higher pesticide concentrations were observed at the row-crop basins compared with those observed at the mixed land-use basin probably because sampling sites for the row-crop basins were closer to the pesticide sources. No pesticides were detected in the forested basin. Comparisons of pesticide concentrations in soil from the two row-crop basins indicated some differences. Concentrations of the soil pesticides isopropalin and flumetralin were higher in the SLM basin than in the CLM basin. The surface-water quality of the mixed land-use basin generally was less affected by agricultural nonpoint sources than that of the smaller row-crop b

Non-invasive monitoring of below ground cassava storage root bulking by ground penetrating radar technology

NASA Astrophysics Data System (ADS)

Ruiz Vera, U. M.; Larson, T. H.; Mwakanyamale, K. E.; Grennan, A. K.; Souza, A. P.; Ort, D. R.; Balikian, R. J.

2017-12-01

Agriculture needs a new technological revolution to be able to meet the food demands, to overcome weather and natural hazards events, and to monitor better crop productivity. Advanced technologies used in other fields have recently been applied in agriculture. Thus, imagine instrumentation has been applied to phenotype above-ground biomass and predict yield. However, the capability to monitor belowground biomass is still limited. There are some existing technologies available, for example the ground penetrating radar (GPR) which has been used widely in the area of geology and civil engineering to detect different kind of formations under the ground without the disruption of the soil. GPR technology has been used also to monitor tree roots but as yet not crop roots. Some limitation are that the GPR cannot discern roots smaller than 2 cm in diameter, but it make it feasible for application in tuber crops like Cassava since harvest diameter is greater than 4 cm. The objective of this research is to test the availability to use GPR technology to monitor the growth of cassava roots by testing this technique in the greenhouse and in the field. So far, results from the greenhouse suggest that GPR can detect mature roots of cassava and this data could be used to predict biomass.

Profiling of differentially expressed genes critical to storage root development in hydroponically and in-vitro grown sweetpotato for space farming

NASA Astrophysics Data System (ADS)

Egnin, M.; Gao, H.; He, G.; Woullard, F.; Mortley, D.; Scoffield, J.; Bey, B.; Quain, M.; Prakash, C. S.; Bonsi, C.

Environment is known to have significant effects on the nutrient content and quality of crop plants especially through its impact on the temporal and spatial expression of genes Little is known about the molecular changes and harvest index in plants in response to microgravity Sweetpotato underline Ipomoea underline batatas L Lam is one of the most important root crops and an excellent NASA crop for space farming to provide essential nutrients to sustain human life on long-term space missions The initiation and development of storage root formation is one of the most critical processes determining yield of sweetpotato The molecular mechanism of storage root initiation and development in sweetpotato is poorly understood To this end knowledge of gravity perception the genetic and molecular nature of the induction process of storage root will tremendously help improve on sweetpotato harvest index for space farming cDNA-AFLP techniques were employed to investigate temporal and spatial expressions to gain molecular insights and identify transcripts differentially expressed during early stages of sweetpotato storage root development Two hydroponically grown cultivars using Nutrient Film Technology NFT and microstorage roots were evaluated TU-82-155 an early maturing 90 DAP with orange flesh and tinge red skin and PI318846-3 a late maturing 135 DAP with white flesh and off-yellow skin were compared for differential genes expression during storage root development at 14 21 28 35 and 45 DAP Total RNA was isolated from

Root growth, water uptake, and sap flow of winter wheat in response to different soil water conditions

NASA Astrophysics Data System (ADS)

Cai, Gaochao; Vanderborght, Jan; Langensiepen, Matthias; Schnepf, Andrea; Hüging, Hubert; Vereecken, Harry

2018-04-01

How much water can be taken up by roots and how this depends on the root and water distributions in the root zone are important questions that need to be answered to describe water fluxes in the soil-plant-atmosphere system. Physically based root water uptake (RWU) models that relate RWU to transpiration, root density, and water potential distributions have been developed but used or tested far less. This study aims at evaluating the simulated RWU of winter wheat using the empirical Feddes-Jarvis (FJ) model and the physically based Couvreur (C) model for different soil water conditions and soil textures compared to sap flow measurements. Soil water content (SWC), water potential, and root development were monitored noninvasively at six soil depths in two rhizotron facilities that were constructed in two soil textures: stony vs. silty, with each of three water treatments: sheltered, rainfed, and irrigated. Soil and root parameters of the two models were derived from inverse modeling and simulated RWU was compared with sap flow measurements for validation. The different soil types and water treatments resulted in different crop biomass, root densities, and root distributions with depth. The two models simulated the lowest RWU in the sheltered plot of the stony soil where RWU was also lower than the potential RWU. In the silty soil, simulated RWU was equal to the potential uptake for all treatments. The variation of simulated RWU among the different plots agreed well with measured sap flow but the C model predicted the ratios of the transpiration fluxes in the two soil types slightly better than the FJ model. The root hydraulic parameters of the C model could be constrained by the field data but not the water stress parameters of the FJ model. This was attributed to differences in root densities between the different soils and treatments which are accounted for by the C model, whereas the FJ model only considers normalized root densities. The impact of differences in root density on RWU could be accounted for directly by the physically based RWU model but not by empirical models that use normalized root density functions.

Crop-associated virus reduces the rooting depth of non-crop perennial native grass more than non-crop-associated virus with known viral suppressor of RNA silencing (VSR).

PubMed

Malmstrom, Carolyn M; Bigelow, Patrick; Trębicki, Piotr; Busch, Anna K; Friel, Colleen; Cole, Ellen; Abdel-Azim, Heba; Phillippo, Colin; Alexander, Helen M

2017-09-15

As agricultural acreage expanded and came to dominate landscapes across the world, viruses gained opportunities to move between crop and wild native plants. In the Midwestern USA, virus exchange currently occurs between widespread annual Poaceae crops and remnant native perennial prairie grasses now under consideration as bioenergy feedstocks. In this region, the common aphid species Rhopalosiphum padi L. (the bird cherry-oat aphid) transmits several virus species in the family Luteoviridae, including Barley yellow dwarf virus (BYDV-PAV, genus Luteovirus) and Cereal yellow dwarf virus (CYDV-RPV and -RPS, genus Polerovirus). The yellow dwarf virus (YDV) species in these two genera share genetic similarities in their 3'-ends, but diverge in the 5'-regions. Most notably, CYDVs encode a P0 viral suppressor of RNA silencing (VSR) absent in BYDV-PAV. Because BYDV-PAV has been reported more frequently in annual cereals and CYDVs in perennial non-crop grasses, we examine the hypothesis that the viruses' genetic differences reflect different affinities for crop and non-crop hosts. Specifically, we ask (i) whether CYDVs might persist within and affect a native non-crop grass more strongly than BYDV-PAV, on the grounds that the polerovirus VSR could better moderate the defenses of a well-defended perennial, and (ii) whether the opposite pattern of effects might occur in a less defended annual crop. Because previous work found that the VSR of CYDV-RPS possessed greater silencing suppressor efficiency than that of CYDV-RPV, we further explored (iii) whether a novel grass-associated CYDV-RPS isolate would influence a native non-crop grass more strongly than a comparable CYDV-RPV isolate. In growth chamber studies, we found support for this hypothesis: only grass-associated CYDV-RPS stunted the shoots and crowns of Panicum virgatum L. (switchgrass), a perennial native North American prairie grass, whereas crop-associated BYDV-PAV (and coinfection with BYDV-PAV and CYDV-RPS) most stunted annual Avena sativa L. (oats). These findings suggest that some of the diversity in grass-infecting Luteoviridae reflects viral capacity to modulate defenses in different host types. Intriguingly, while all virus treatments also reduced root production in both host species, only crop-associated BYDV-PAV (or co-infection) reduced rooting depths. Such root effects may increase host susceptibility to drought, and indicate that BYDV-PAV pathogenicity is determined by something other than a P0 VSR. These findings contribute to growing evidence that pathogenic crop-associated viruses may harm native species as well as crops. Critical next questions include the extent to which crop-associated selection pressures drive viral pathogenesis. Copyright © 2017 Elsevier B.V. All rights reserved.

Prone to fix: Resilience of the active nitrogen-fixing rice root microbiome

NASA Astrophysics Data System (ADS)

Hurek, Thomas; Sabale, Mugdha; Sarkar, Abhijit; Pees, Tobias; Reinhold-Hurek, Barbara

2016-04-01

Due to water consumption, many lowland rice areas in Asia are undergoing a transition that involves adoption of new management strategies, with crop rotations encompassing a non-flooded crop, including maize. Shifting from flooded to non-flooded cropping is likely to affect microbial nitrogen cycling. For analysis of the root-associated microbiome of rice and maize in response to flooding or nitrogen fertilizer, we combine methods of microbial ecology (Next-Generation sequencing of amplicons), and a reductionist approach with pure cultures of the endophytic diazotroph Azoarus sp.. Field plots of the ICON project (Introducing non-flooded crops in rice-dominated landscapes: Impact on Carbon, nitrogen and water budgets) at the International Rice Research Institute in the Philippines were analyzed. Root-associated activity of nitrogenase gene expression was assessed by quantitative RT-PCR of nifH. For rice, expression levels were surprisingly stable, in response to non-flooded versus flooded conditions, or in response to conventional nitrogen fertilizer applications versus lack of N-fertilizer. In contrast, the active diazotrophic population of maize roots was not resistant to N-fertilization, nifH expression strongly decreased. Concordant changes in the diazotrophic resident or active communities were detected by nifH amplicon sequence analysis, based on bacterial DNA or mRNA, respectively. For high-resolution analyses of the endobiome in gnotobiotic culture, we developed a dual fluorescence reporter system for Azoarcus sp. BH72 which allows to quantify and visualize epi- and endophytic gene expression by concfocal microscopy (CLSM). This allowed us to demonstrate sites of active nitrogen fixation (gene expression) in association with rice roots. We confirmed that at low nitrogen fertilizer levels, endophytic nifH gene expression persisted in rice roots, while it was repressed in maize roots. This supports our observation of remarkable stability of nitrogen fixation in association with rice roots.

Cytokinin-dependent secondary growth determines root biomass in radish (Raphanus sativus L.)

PubMed Central

Jang, Geupil; Lee, Jung-Hun; Rastogi, Khushboo; Park, Suhyoung; Oh, Sang-Hun; Lee, Ji-Young

2015-01-01

The root serves as an essential organ in plant growth by taking up nutrients and water from the soil and supporting the rest of the plant body. Some plant species utilize roots as storage organs. Sweet potatoes (Ipomoea batatas), cassava (Manihot esculenta), and radish (Raphanus sativus), for example, are important root crops. However, how their root growth is regulated remains unknown. In this study, we characterized the relationship between cambium and radial root growth in radish. Through a comparative analysis with Arabidopsis root expression data, we identified putative cambium-enriched transcription factors in radish and analysed their expression in representative inbred lines featuring distinctive radial growth. We found that cell proliferation activities in the cambium positively correlated with radial growth and final yields of radish roots. Expression analysis of candidate transcription factor genes revealed that some genes are differentially expressed between inbred lines and that the difference is due to the distinct cytokinin response. Taken together, we have demonstrated for the first time, to the best of our knowledge, that cytokinin-dependent radial growth plays a key role in the yields of root crops. PMID:25979997

2,4-diacetylphloroglucinol alters plant root development.

PubMed

Brazelton, Jessica N; Pfeufer, Emily E; Sweat, Teresa A; Gardener, Brian B McSpadden; Coenen, Catharina

2008-10-01

Pseudomonas fluorescens isolates containing the phlD gene can protect crops from root pathogens, at least in part through production of the antibiotic 2,4-diacetylphloroglucinol (DAPG). However, the action mechanisms of DAPG are not fully understood, and effects of this antibiotic on host root systems have not been characterized in detail. DAPG inhibited primary root growth and stimulated lateral root production in tomato seedlings. Roots of the auxin-resistant diageotropica mutant of tomato demonstrated reduced DAPG sensitivity with regards to inhibition of primary root growth and induction of root branching. Additionally, applications of exogenous DAPG, at concentrations previously found in the rhizosphere of plants inoculated with DAPG-producing pseudomonads, inhibited the activation of an auxin-inducible GH3 promoter::luciferase reporter gene construct in transgenic tobacco hypocotyls. In this model system, supernatants of 17 phlD+ P. fluorescens isolates had inhibitory effects on luciferase activity similar to synthetic DAPG. In addition, a phlD() mutant strain, unable to produce DAPG, demonstrated delayed inhibitory effects compared with the parent wild-type strain. These results indicate that DAPG can alter crop root architecture by interacting with an auxin-dependent signaling pathway.

Azadirachtin powder for control of root-knot nematodes in tomato

USDA-ARS?s Scientific Manuscript database

USDA ARS Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, 64 Nowelo St., Hilo, HI 96720. Root-knot nematodes cause root galling and yield reductions in many vegetable crops, including tomato. Three organic treatments to improve root growth and reduce nematode infestation were eval...

Impact of water quality and irrigation management on soil salinization in the Drâa valley of Morocco.

NASA Astrophysics Data System (ADS)

Beff, L.; Descamps, C.; Dufey, J.; Bielders, C.

2009-04-01

Under the arid climatic conditions of the Drâa valley in southern Morocco, irrigation is essential for crop production. Two sources of water are available to farmers: (1) moderate salinity water from the Oued Drâa (classified as C3-S1 in the USDA irrigation water classification diagram) which is available only a few times per year following discrete releases from the Mansour Eddahbi dam, and (2) high salinity water from wells (C4-S2). Soil salinization is frequently observed, principally on plots irrigated with well water. As Oued water is available in insufficient amounts, strategies must be devised to use well and Oued water judiciously, without inducing severe salinization. The salinization risk under wheat production was evaluated using the HP1 program (Jacques and Šimůnek, 2005) for different combinations of the two main water sources, different irrigation frequencies and irrigation volumes. The soil was a sandy clay loam (topsoil) to sandy loam (40 cm depth). Soil hydrodynamic properties were derived from in situ measurements and lab measurements on undisturbed soil samples. The HP1 model was parameterized for wheat growth and 12 scenarios were run for 10 year periods using local climatic data. Water quality was measured or estimated on the basis of water samples in wells and various Oueds, and the soil chemical properties were determined. Depending on the scenario, soil salinity in the mean root zone increased from less than 1 meq/100g of soil to more than 5 meq/100g of soil over a ten year period. Salt accumulation was more pronounced at 45 cm soil depth, which is half of the maximum rooting depth, and when well water was preferentially used. Maximum crop yield (water transpired / potential water transpired) was achieved for five scenarios but this implied the use of well water to satisfy the crop water requirements. The usual Drâa Valley irrigation scenario, with five, 84 mm dam water applications per year, lead to a 25% yield loss. Adding the amount of well water needed to satisfy the crop water requirements as well as the leaching requirement had the lowest impact on soil salinization but resulted in a very low water use efficiency of 0.2 (water transpired / water added). This demonstrates the importance of using larger amounts of water than plant water requirements in this region in order to leach out salt of the root zone. However, in arid region, water is often limited and thus farmers can not afford to waste it. In that case, it is necessary to find a compromise between salinization, sodification and saving water. References: Jacques D., Šimůnek J. (2005). User Manual of the Multicomponent Variably-Saturated Flow and Transport Model HP1. Waste and Disposal Department, Mol, Belgium. USDA, United States Department of Agriculture (1969). Diagnosis and Improvement of Saline and Alkali Soils. United States Salinity Laboratory Staff, Agriculture Handbook No. 60, 160p.

Influence of Organic Amendment and Compaction on Nutrient Dynamics in a Saturated Saline-Sodic Soil from the Riparian Zone.

PubMed

Miller, J J; Bremer, E; Curtis, T

2016-07-01

Cattle grazing in wet riparian pastures may influence nutrient dynamics due to nutrient deposition in feces and urine, soil compaction, and vegetation loss. We conducted a lab incubation study with a saline-sodic riparian soil to study nutrient (N, P, S, Fe, Mn, Cu, and Zn) dynamics in soil pore water using Plant Root Simulator (PRS) probes and release of nutrients into the overlying ponded water during flooding. The treatment factors were organic amendment (manure, roots, and unamended control), compaction (compacted, uncompacted), and burial time (3, 7, and 14 d). Amendment treatment had the greatest impact on nutrient dynamics, followed by burial time, whereas compaction had little impact. The findings generally supported our hypothesis that organic amendments should first increase nitrate loss, then increase Mn mobility, then Fe mobility and associated release of P, and finally increase sulfate loss. Declines in nitrate due to amendment addition were small because nitrate was at low levels in all treatments due to high denitrification potential instead of being released to soil pore water or overlying water. Addition of organic amendment strongly increased Mn and Fe concentrations in overlying water and of adsorbed Fe on PRS probes but only increased Mn on PRS probes on Day 3 due to subsequent displacement from ion exchange membranes. Transport of P to overlying water was increased by organic amendment addition but less so for manure than roots despite higher P on PRS probes. The findings showed that saline-sodic soils in riparian zones are generally a nutrient source for P and are a nutrient sink for N as measured using PRS probes after 3 to 7 d of flooding. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Pests, diseases and crop protection practices in the smallholder sweetpotato production system of the highlands of Papua New Guinea

PubMed Central

Liu, Jian; Johnson, Anne C.; Woruba, Deane N.; Kirchhof, Gunnar; Fujinuma, Ryosuke; Sirabis, William; Jeffery, Yapo; Akkinapally, Ramakrishna

2016-01-01

Sweetpotato (Ipomea batatans) is a food crop of global significance. The storage roots and foliage of crop are attacked by a wide range of pests and diseases. Whilst these are generally well controlled in developed countries using approaches such as clean planting material and monitoring with pheromone traps to guide insecticide use, research into methods suitable for developing countries has lagged. In Papua New Guinea (PNG), sweetpotato is grown extensively as a subsistence crop and commercial production as a cash crop is developing. We report results from a survey of 33 smallholder producers located in the Highlands of PNG where the crop is of particular importance. Surveys of interviewees’ crops showed high levels of pest and disease impact to foliage, stems and storage roots, especially in crops that were several years old. Weevils (Curculionidae) were reportedly the most damaging pests and scab (caused by the fungus Elisnoe batatus) the most damaging disease. Most producers reported root damage from the former and foliar damage from the latter but the general level of knowledge of pest and disease types was low. Despite the apparency of pest and disease signs and symptoms and recognition of their importance by farmers, a large majority of producers reported practiced no active pest or disease management. This was despite low numbers of farmers reporting use of traditional cultural practices including phytosanitary measures and insecticidal plants that had the scope for far wider use. Only one respondent reported use of insecticide though pesticides were available in nearby cities. This low level of pest and disease management in most cases, likely due to paucity in biological and technical knowledge among growers, hampers efforts to establish food security and constrains the development of sweetpotato as a cash crop. PMID:27957387

Pests, diseases and crop protection practices in the smallholder sweetpotato production system of the highlands of Papua New Guinea.

PubMed

Gurr, Geoff M; Liu, Jian; Johnson, Anne C; Woruba, Deane N; Kirchhof, Gunnar; Fujinuma, Ryosuke; Sirabis, William; Jeffery, Yapo; Akkinapally, Ramakrishna

2016-01-01

Sweetpotato ( Ipomea batatans ) is a food crop of global significance. The storage roots and foliage of crop are attacked by a wide range of pests and diseases. Whilst these are generally well controlled in developed countries using approaches such as clean planting material and monitoring with pheromone traps to guide insecticide use, research into methods suitable for developing countries has lagged. In Papua New Guinea (PNG), sweetpotato is grown extensively as a subsistence crop and commercial production as a cash crop is developing. We report results from a survey of 33 smallholder producers located in the Highlands of PNG where the crop is of particular importance. Surveys of interviewees' crops showed high levels of pest and disease impact to foliage, stems and storage roots, especially in crops that were several years old. Weevils (Curculionidae) were reportedly the most damaging pests and scab (caused by the fungus Elisnoe batatus ) the most damaging disease. Most producers reported root damage from the former and foliar damage from the latter but the general level of knowledge of pest and disease types was low. Despite the apparency of pest and disease signs and symptoms and recognition of their importance by farmers, a large majority of producers reported practiced no active pest or disease management. This was despite low numbers of farmers reporting use of traditional cultural practices including phytosanitary measures and insecticidal plants that had the scope for far wider use. Only one respondent reported use of insecticide though pesticides were available in nearby cities. This low level of pest and disease management in most cases, likely due to paucity in biological and technical knowledge among growers, hampers efforts to establish food security and constrains the development of sweetpotato as a cash crop.

Effects of crop load on distribution and utilization of 13C and 15N and fruit quality for dwarf apple trees.

PubMed

Ding, Ning; Chen, Qian; Zhu, Zhanling; Peng, Ling; Ge, Shunfeng; Jiang, Yuanmao

2017-10-26

In order to define the effects of fruit crop load on the distribution and utilization of carbon and nitrogen in dwarf apple trees, we conducted three crop load levels (High-crop load, 6 fruits per trunk cross-sectional area (cm 2 , TCA)), Medium-crop load (4 fruits cm -2 TCA), Low-crop load (2 fruits cm -2 TCA)) in 2014 and 2015. The results indicated that the 15 N derived from fertilizer (Ndff) values of fruits decreased with the reduction of crop load, but the Ndff values of annual branches, leaves and roots increased. The plant 15 N-urea utilization rates on Medium and Low-crop load were 1.12-1.35 times higher than the High-crop load. With the reduction of crop load, the distribution rate of 13 C and 15 N in fruits was gradually reduced, but in contrast, the distribution of 13 C and 15 N gradually increased in annual branches, leaves and roots. Compared with High-crop load, the Medium and Low-crop load significantly improved fruit quality p < 0.05. Hence, controlling fruit load effectively regulated the distribution of carbon and nitrogen in plants, improved the nitrogen utilization rate and fruit quality. The appropriate crop load level for mature M.26 interstocks apple orchards was deemed to be 4.0 fruits cm -2 TCA.

Forecasting changes in water quality in rivers associated with growing biofuels in the Arkansas-White-Red river drainage, USA

DOE PAGES

Jager, Henriette I.; Baskaran, Latha M.; Schweizer, Peter E.; ...

2014-05-15

We study that the mid-section of the Arkansas-White-Red (AWR) river basin near the 100 th parallel is particularly promising for sustainable biomass production using cellulosic perennial crops and residues. Along this longitudinal band, precipitation becomes limiting to competing crops that require irrigation from an increasingly depleted groundwater aquifer. In addition, the deep-rooted perennial, switchgrass, produces modest-to-high yields in this region with minimal inputs and could compete against alternative crops and land uses at relatively low cost. Previous studies have also suggested that switchgrass and other perennial feedstocks offer environmentally benign alternatives to corn and corn stover. However, water quality implicationsmore » remain a significant concern for conversion of marginal lands to bioenergy production because excess nutrients produced by agriculture for food or for energy contribute to eutrophication in the dead-zone in the Gulf of Mexico. This study addresses water quality implications for the AWR river basin. We used the SWAT model to compare water quality in rivers draining a baseline, pre-cellulosic-bioenergy and post-cellulosic-bioenergy landscapes for 2022 and 2030. Simulated water quality responses varied across the region, but with a net tendency toward decreased amounts of nutrient and sediment, particularly in subbasins with large areas of bioenergy crops in 2030 future scenarios. We conclude that water quality is one aspect of sustainability for which cellulosic bioenergy production in this region holds promise.« less

Soil water nitrate concentrations in giant cane and forest riparian buffer zones

Treesearch

Jon E. Schoonover; Karl W. J. Williard; James J. Zaczek; Jean C. Mangun; Andrew D. Carver

2003-01-01

Soil water nitrate concentrations in giant cane and forest riparian buffer zones along Cypress Creek in southern Illinois were compared to determine if the riparian zones were sources or sinks for nitrogen in the rooting zone. Suction lysimeters were used to collect soil water samples from the lower rooting zone in each of the two vegetation types. The cane riparian...

Integration of root phenes revealed by intensive phenotyping of root system architecture, anatomy, and physiology in cereals

NASA Astrophysics Data System (ADS)

York, Larry

2015-04-01

Food insecurity is among the greatest challenges humanity will face in the 21st century. Agricultural production in much of the world is constrained by the natural infertility of soil which restrains crops from reaching their yield potential. In developed nations, fertilizer inputs pollute air and water and contribute to climate change and environmental degradation. In poor nations low soil fertility is a primary constraint to food security and economic development. Water is almost always limiting crop growth in any system. Increasing the acquisition efficiency of soil resources is one method by which crop yields could be increased without the use of more fertilizers or irrigation. Cereals are the most widely grown crops, both in terms of land area and in yield, so optimizing uptake efficiency of cereals is an important goal. Roots are the primary interface between plant and soil and are responsible for the uptake of soil resources. The deployment of roots in space and time comprises root system architecture (RSA). Cereal RSA is a complex phenotype that aggregates many elemental phenes (elemental units of phenotype). Integration of root phenes will be determined by interactions through their effects on soil foraging and plant metabolism. Many architectural, metabolic, and physiological root phenes have been identified in maize, including: nodal root number, nodal root growth angle, lateral root density, lateral root length, aerenchyma, cortical cell size and number, and nitrate uptake kinetics. The utility of these phenes needs confirmation in maize and in other cereals. The maize root system is composed of an embryonic root system and nodal roots that emerge in successive whorls as the plant develops, and is similar to other cereals. Current phenotyping platforms often ignore the inner whorls and instead focus on the most visible outer whorls after excavating a maize root crown from soil. Here, an intensive phenotyping platform evaluating phenes of all nodal root whorls in maize is introduced, and field work demonstrated how the variation within the root crown has functional significance for nitrogen acquisition. Nodal root number was decomposed to more elemental phenes including the number of nodes and the occupancies of each node. Simulations demonstrated that root systems forming fewer nodal roots and with delayed emergence perform well in low nitrogen soils. Nitrate uptake kinetics (NUK) also varied within the maize root system, and simulations showing a lack of interaction between NUK and RSA reflects a knowledge gap in the costs of NUK at the molecular level. Finally, maize RSA among hybrids from different era periods over the past 100 years suggests evolution towards more nitrogen efficient root phene states. This work will be discussed within the context of next-generation root phenotyping of cereals, the dilemma between extensive and intensive phenotyping, and the need for linking across scales and methods.

Uptake and distribution of bisphenol A and nonylphenol in vegetable crops irrigated with reclaimed water.

PubMed

Lu, Jian; Wu, Jun; Stoffella, Peter J; Wilson, P Chris

2015-01-01

The potential uptake and distribution of bisphenol A (BPA) and nonylphenol (NP) (from reclaimed irrigation water) in edible crops was investigated. BPA and NP were spiked into simulated reclaimed water at environmentally relevant concentrations. Two crops (lettuce, Lactuca sativa and tomato, Lycopersicon esculentum) were grown hydroponically in a greenhouse using the spiked irrigation water under two irrigation exposure scenarios (overhead foliar exposure and subsurface root exposure). BPA concentrations in tomato fruit were 26.6 ± 5.8 (root exposure) and 18.3 ± 3.5 (foliar exposure) μg kg(-1), while concentrations in lettuce leaves were 80.6 ± 23.1 (root exposure) and 128.9 ± 17.4 (foliar exposure) μg kg(-1). NP concentrations in tomato fruit were 46.1 ± 6.6 (root exposure) and 24.6 ± 6.4 (foliar exposure) μg kg(-1), while concentrations in lettuce leaves were 144.1 ± 9.2 (root exposure) and 195.0 ± 16.9 (foliar exposure) μg kg(-1). BPA was relatively mobile in lettuce plants regardless of exposure route. Limited mobility was observed for NP in both crops and BPA in tomatoes. The estimated daily intake of BPA and NP through consumption of vegetables irrigated with reclaimed water ranged from 8.9-62.9 to 11.9-95.1 μg, respectively, depending on the exposure route. Copyright © 2014 Elsevier B.V. All rights reserved.

Combined acid rain and lanthanum pollution and its potential ecological risk for nitrogen assimilation in soybean seedling roots.

PubMed

Zhang, Fan; Cheng, Mengzhu; Sun, Zhaoguo; Wang, Lihong; Zhou, Qing; Huang, Xiaohua

2017-12-01

Rare earth elements (REEs) are used in various fields, resulting in their accumulation in the environment. This accumulation has affected the survival and distribution of crops in various ways. Acid rain is a serious global environmental problem. The combined effects on crops from these two types of pollution have been reported, but the effects on crop root nitrogen assimilation are rarely known. To explore the impact of combined contamination from these two pollutants on crop nitrogen assimilation, the soybean seedlings were treated with simulated environmental pollution from acid rain and a representative rare earth ion, lanthanum ion (La 3+ ), then the indexes related to plant nitrogen assimilation process in roots were determined. The results showed that combined treatment with pH 4.5 acid rain and 0.08 mM La 3+ promoted nitrogen assimilation synergistically, while the other combined treatments all showed inhibitory effects. Moreover, acid rain aggravated the inhibitory effect of 1.20 or 0.40 mM La 3+ on nitrogen assimilation in soybean seedling roots. Thus, the effects of acid rain and La 3+ on crops depended on the combination levels of acid rain intensity and La 3+ concentration. Acid rain increases the bioavailability of La 3+ , and the combined effects of these two pollutants were more serious than that of either pollutant alone. These results provide new evidence in favor of limiting overuse of REEs in agriculture. This work also provides a new framework for ecological risk assessment of combined acid rain and REEs pollution on soybean crops. Copyright © 2017 Elsevier Ltd. All rights reserved.

Overestimation of Crop Root Biomass in Field Experiments Due to Extraneous Organic Matter

PubMed Central

Hirte, Juliane; Leifeld, Jens; Abiven, Samuel; Oberholzer, Hans-Rudolf; Hammelehle, Andreas; Mayer, Jochen

2017-01-01

Root biomass is one of the most relevant root parameters for studies of plant response to environmental change, soil carbon modeling or estimations of soil carbon sequestration. A major source of error in root biomass quantification of agricultural crops in the field is the presence of extraneous organic matter in soil: dead roots from previous crops, weed roots, incorporated above ground plant residues and organic soil amendments, or remnants of soil fauna. Using the isotopic difference between recent maize root biomass and predominantly C3-derived extraneous organic matter, we determined the proportions of maize root biomass carbon of total carbon in root samples from the Swiss long-term field trial “DOK.” We additionally evaluated the effects of agricultural management (bio-organic and conventional), sampling depth (0–0.25, 0.25–0.5, 0.5–0.75 m) and position (within and between maize rows), and root size class (coarse and fine roots) as defined by sieve mesh size (2 and 0.5 mm) on those proportions, and quantified the success rate of manual exclusion of extraneous organic matter from root samples. Only 60% of the root mass that we retrieved from field soil cores was actual maize root biomass from the current season. While the proportions of maize root biomass carbon were not affected by agricultural management, they increased consistently with soil depth, were higher within than between maize rows, and were higher in coarse (>2 mm) than in fine (≤2 and >0.5) root samples. The success rate of manual exclusion of extraneous organic matter from root samples was related to agricultural management and, at best, about 60%. We assume that the composition of extraneous organic matter is strongly influenced by agricultural management and soil depth and governs the effect size of the investigated factors. Extraneous organic matter may result in severe overestimation of recovered root biomass and has, therefore, large implications for soil carbon modeling and estimations of the climate change mitigation potential of soils. PMID:28298919

Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification

PubMed Central

Qu, Lianghuan; Wu, Chunyan; Zhang, Fei; Wu, Yangyang; Fang, Chuanying; Jin, Cheng; Liu, Xianqing; Luo, Jie

2016-01-01

Pectin synthesis and modification are vital for plant development, although the underlying mechanisms are still not well understood. Here, we report the functional characterization of the OsTSD2 gene, which encodes a putative methyltransferase in rice. All three independent T-DNA insertion lines of OsTSD2 displayed dwarf phenotypes and serial alterations in different zones of the root. These alterations included abnormal cellular adhesion and schizogenous aerenchyma formation in the meristematic zone, inhibited root elongation in the elongation zone, and higher lateral root density in the mature zone. Immunofluorescence (with LM19) and Ruthenium Red staining of the roots showed that unesterified homogalacturonan (HG) was increased in Ostsd2 mutants. Biochemical analysis of cell wall pectin polysaccharides revealed that both the monosaccharide composition and the uronic acid content were decreased in Ostsd2 mutants. Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification. A hypothesis to explain the relationship among OsTSD2, pectin methylesterification, and root development is proposed, based on pectin’s function in regional cell extension/division in a zone-dependent manner. PMID:27497286

Induction of curvature in maize roots by calcium or by thigmostimulation: role of the postmitotic isodiametric growth zone

NASA Technical Reports Server (NTRS)

Ishikawa, H.; Evans, M. L.

1992-01-01

We examined the response of primary roots of maize (Zea mays L. cv Merit) to unilateral application of calcium with particular attention to the site of application, the dependence on growth rate, and possible contributions of thigmotropic stimulation during application. Unilateral application of agar to the root cap induced negative curvature whether or not the agar contained calcium. This apparent thigmotropic response was enhanced by including calcium in the agar. Curvature away from objects applied unilaterally to the extreme root tip occurred both in intact and detipped roots. When agar containing calcium chloride was applied to one side of the postmitotic isodiametric growth zone ( a region between the apical meristem and the elongation zone), the root curved toward the side of application. This response could not be induced by plain agar. We conclude that curvature away from calcium applied to the root tip results from a thigmotropic response to stimulation during application. In contrast, curvature toward the calcium applied to the postmitotic isodiametric growth zone results from direct calcium-induced inhibition of growth.

Responses of root physiological characteristics and yield of sweet potato to humic acid urea fertilizer

PubMed Central

Kou, Meng; Tang, Zhonghou; Zhang, Aijun; Li, Hongmin; Wei, Meng

2017-01-01

Humic acid (HA), not only promote the growth of crop roots, they can be combined with nitrogen (N) to increase fertilizer use efficiency and yield. However, the effects of HA urea fertilizer (HA-N) on root growth and yield of sweet potato has not been widely investigated. Xushu 28 was used as the experimental crop to investigate the effects of HA-N on root morphology, active oxygen metabolism and yield under field conditions. Results showed that nitrogen application alone was not beneficial for root growth and storage root formation during the early growth stage. HA-N significantly increased the dry weight of the root system, promoted differentiation from adventitious root to storage root, and increased the overall root activity, total root length, root diameter, root surface area, as well as root volume. HA-N thus increased the activity of superoxide dismutase (SOD), peroxidase (POD), and Catalase (CAT) as well as increasing the soluble protein content of roots and decreasing the malondialdehyde (MDA) content. HA-N significantly increased both the number of storage roots per plant increased by 14.01%, and the average fresh weight per storage root increased by 13.7%, while the yield was also obviously increased by 29.56%. In this study, HA-N increased yield through a synergistic increase of biological yield and harvest index. PMID:29253886

Perfluoroalkyl acid distribution in various plant compartments ...

EPA Pesticide Factsheets

Crop uptake of perfluoroalkyl acids (PFAAs) from biosolids-amended soil has been identified as a potential pathway for PFAA entry into the terrestrial food chain. This study compared the uptake of PFAAs in greenhouse-grown radish (Raphanus sativus), celery (Apium graveolens var.dulce), tomato (Lycopersicon lycopersicum), and sugar snap pea (Pisum sativum var. macrocarpon) from an industrially impacted biosolids-amended soil, a municipal biosolids­ amended soil, and a control soil. Individual concentrations of PFAAs, on a dry weight basis, in mature, edible portions of crops grown in soil amended with PFAA industrially impacted biosolids were highest for perfluorooctanoate (PFOA; 67 ng/g) in radish root, perfluorobutanoate (PFBA;232 ng/g) in celery shoot, and PFBA (150 ng/g) in pea fruit. Comparatively, PFAA concentrations in edible compartments of crops grown in the municipal biosolids-amended soil and in the control soil were less than 25 ng/g. Bioaccumulation factors (BAFs) were calculated for the root, shoot, and fruit compartments (as applicable) of all crops grown in the industrially impacted soil. BAFs were highest for PFBA in the shoots of all crops, as well as in the fruit compartment of pea. Root­ soil concentration factors (RCFs) for tomato and pea were independent of PFAA chain length, while radish and celery RCFs showed a slight decrease with increasing chain length. Shoot-soil concentration factors (SCFs) for all crops showed a decrease with incre

Advancements in Root Growth Measurement Technologies and Observation Capabilities for Container-Grown Plants.

PubMed

Judd, Lesley A; Jackson, Brian E; Fonteno, William C

2015-07-03

The study, characterization, observation, and quantification of plant root growth and root systems (Rhizometrics) has been and remains an important area of research in all disciplines of plant science. In the horticultural industry, a large portion of the crops grown annually are grown in pot culture. Root growth is a critical component in overall plant performance during production in containers, and therefore it is important to understand the factors that influence and/or possible enhance it. Quantifying root growth has varied over the last several decades with each method of quantification changing in its reliability of measurement and variation among the results. Methods such as root drawings, pin boards, rhizotrons, and minirhizotrons initiated the aptitude to measure roots with field crops, and have been expanded to container-grown plants. However, many of the published research methods are monotonous and time-consuming. More recently, computer programs have increased in use as technology advances and measuring characteristics of root growth becomes easier. These programs are instrumental in analyzing various root growth characteristics, from root diameter and length of individual roots to branching angle and topological depth of the root architecture. This review delves into the expanding technologies involved with expertly measuring root growth of plants in containers, and the advantages and disadvantages that remain.

Advancements in Root Growth Measurement Technologies and Observation Capabilities for Container-Grown Plants

PubMed Central

Judd, Lesley A.; Jackson, Brian E.; Fonteno, William C.

2015-01-01

The study, characterization, observation, and quantification of plant root growth and root systems (Rhizometrics) has been and remains an important area of research in all disciplines of plant science. In the horticultural industry, a large portion of the crops grown annually are grown in pot culture. Root growth is a critical component in overall plant performance during production in containers, and therefore it is important to understand the factors that influence and/or possible enhance it. Quantifying root growth has varied over the last several decades with each method of quantification changing in its reliability of measurement and variation among the results. Methods such as root drawings, pin boards, rhizotrons, and minirhizotrons initiated the aptitude to measure roots with field crops, and have been expanded to container-grown plants. However, many of the published research methods are monotonous and time-consuming. More recently, computer programs have increased in use as technology advances and measuring characteristics of root growth becomes easier. These programs are instrumental in analyzing various root growth characteristics, from root diameter and length of individual roots to branching angle and topological depth of the root architecture. This review delves into the expanding technologies involved with expertly measuring root growth of plants in containers, and the advantages and disadvantages that remain. PMID:27135334

Differentiating Wheat Genotypes by Bayesian Hierarchical Nonlinear Mixed Modeling of Wheat Root Density

PubMed Central

Wasson, Anton P.; Chiu, Grace S.; Zwart, Alexander B.; Binns, Timothy R.

2017-01-01

Ensuring future food security for a growing population while climate change and urban sprawl put pressure on agricultural land will require sustainable intensification of current farming practices. For the crop breeder this means producing higher crop yields with less resources due to greater environmental stresses. While easy gains in crop yield have been made mostly “above ground,” little progress has been made “below ground”; and yet it is these root system traits that can improve productivity and resistance to drought stress. Wheat pre-breeders use soil coring and core-break counts to phenotype root architecture traits, with data collected on rooting density for hundreds of genotypes in small increments of depth. The measured densities are both large datasets and highly variable even within the same genotype, hence, any rigorous, comprehensive statistical analysis of such complex field data would be technically challenging. Traditionally, most attributes of the field data are therefore discarded in favor of simple numerical summary descriptors which retain much of the high variability exhibited by the raw data. This poses practical challenges: although plant scientists have established that root traits do drive resource capture in crops, traits that are more randomly (rather than genetically) determined are difficult to breed for. In this paper we develop a hierarchical nonlinear mixed modeling approach that utilizes the complete field data for wheat genotypes to fit, under the Bayesian paradigm, an “idealized” relative intensity function for the root distribution over depth. Our approach was used to determine heritability: how much of the variation between field samples was purely random vs. being mechanistically driven by the plant genetics? Based on the genotypic intensity functions, the overall heritability estimate was 0.62 (95% Bayesian confidence interval was 0.52 to 0.71). Despite root count profiles that were statistically very noisy, our approach led to denoised profiles which exhibited rigorously discernible phenotypic traits. Profile-specific traits could be representative of a genotype, and thus, used as a quantitative tool to associate phenotypic traits with specific genotypes. This would allow breeders to select for whole root system distributions appropriate for sustainable intensification, and inform policy for mitigating crop yield risk and food insecurity. PMID:28303148

Common and distinguishing features of the bacterial and fungal communities in biological soil crusts and shrub root zone soils

USGS Publications Warehouse

Steven, Blaire; Gallegos-Graves, La Verne; Yeager, Chris; Belnap, Jayne; Kuske, Cheryl R.

2013-01-01

Soil microbial communities in dryland ecosystems play important roles as root associates of the widely spaced plants and as the dominant members of biological soil crusts (biocrusts) colonizing the plant interspaces. We employed rRNA gene sequencing (bacterial 16S/fungal large subunit) and shotgun metagenomic sequencing to compare the microbial communities inhabiting the root zones of the dominant shrub, Larrea tridentata (creosote bush), and the interspace biocrusts in a Mojave desert shrubland within the Nevada Free Air CO2 Enrichment (FACE) experiment. Most of the numerically abundant bacteria and fungi were present in both the biocrusts and root zones, although the proportional abundance of those members differed significantly between habitats. Biocrust bacteria were predominantly Cyanobacteria while root zones harbored significantly more Actinobacteria and Proteobacteria. Pezizomycetes fungi dominated the biocrusts while Dothideomycetes were highest in root zones. Functional gene abundances in metagenome sequence datasets reflected the taxonomic differences noted in the 16S rRNA datasets. For example, functional categories related to photosynthesis, circadian clock proteins, and heterocyst-associated genes were enriched in the biocrusts, where populations of Cyanobacteria were larger. Genes related to potassium metabolism were also more abundant in the biocrusts, suggesting differences in nutrient cycling between biocrusts and root zones. Finally, ten years of elevated atmospheric CO2 did not result in large shifts in taxonomic composition of the bacterial or fungal communities or the functional gene inventories in the shotgun metagenomes.

Root Tip Shape Governs Root Elongation Rate under Increased Soil Strength1[OPEN

PubMed Central

Kirchgessner, Norbert; Walter, Achim

2017-01-01

Increased soil strength due to soil compaction or soil drying is a major limitation to root growth and crop productivity. Roots need to exert higher penetration force, resulting in increased penetration stress when elongating in soils of greater strength. This study aimed to quantify how the genotypic diversity of root tip geometry and root diameter influences root elongation under different levels of soil strength and to determine the extent to which roots adjust to increased soil strength. Fourteen wheat (Triticum aestivum) varieties were grown in soil columns packed to three bulk densities representing low, moderate, and high soil strength. Under moderate and high soil strength, smaller root tip radius-to-length ratio was correlated with higher genotypic root elongation rate, whereas root diameter was not related to genotypic root elongation. Based on cavity expansion theory, it was found that smaller root tip radius-to-length ratio reduced penetration stress, thus enabling higher root elongation rates in soils with greater strength. Furthermore, it was observed that roots could only partially adjust to increased soil strength. Root thickening was bounded by a maximum diameter, and root tips did not become more acute in response to increased soil strength. The obtained results demonstrated that root tip geometry is a pivotal trait governing root penetration stress and root elongation rate in soils of greater strength. Hence, root tip shape needs to be taken into account when selecting for crop varieties that may tolerate high soil strength. PMID:28600344

Efficacy of Fluensulfone in a Tomato–Cucumber Double Cropping System

PubMed Central

Morris, Kelly A.; Langston, David B.; Dickson, Donald W.; Davis, Richard F.; Timper, Patricia; Noe, James P.

2015-01-01

Vegetable crops in the southeastern United States are commonly grown on plastic mulch with two crop cycles produced on a single mulch application. Field trials were conducted in 2013 and 2014 in two locations to evaluate the efficacy of fluensulfone for controlling Meloidogyne spp. when applied through drip irrigation to cucumber in a tomato–cucumber double-cropping system. In the spring tomato crop, 1,3-dichloropropene (1,3-D), fluensulfone, and a resistant cultivar significantly decreased root galling by 91%, 73%, and 97%, respectively, compared to the untreated control. Tomato plots from the spring were divided into split plots for the fall where the main plots were the spring treatment and the subplots were cucumber either treated with fluensulfone (3.0 kg a.i./ha. via drip irrigation) or left untreated. The fall application of fluensulfone improved cucumber vigor and reduced gall ratings compared to untreated subplots. Fluensulfone reduced damage from root-knot nematodes when applied to the first crop as well as provided additional protection to the second crop when it was applied through a drip system. PMID:26941459

Graviresponsiveness of surgically altered primary roots of Zea mays

NASA Technical Reports Server (NTRS)

Maimon, E.; Moore, R.

1991-01-01

We examined the gravitropic responses of surgically altered primary roots of Zea mays to determine the route by which gravitropic inhibitors move from the root tip to the elongating zone. Horizontally oriented roots, from which a 1-mm-wide girdle of epidermis plus 2-10 layers of cortex were removed from the apex of the elongating zone, curve downward. However, curvature occurred only apical to the girdle. Filling the girdle with mucilage-like material transmits curvature beyond the girdle. Vertically oriented roots with a half-girdle' (i.e. the epidermis and 2-10 layers of the cortex removed from half of the circumference of the apex of the elongating zone) curve away from the girdle. Inserting the half-girdle at the base of the elongating zone induces curvature towards the girdle. Filling the half-circumference girdles with mucilage-like material reduced curvature significantly. Stripping the epidermis and outer 2-5 layers of cortex from the terminal 1.5 cm of one side of a primary root induces curvature towards the cut, irrespective of the root's orientation to gravity. This effect is not due to desiccation since treated roots submerged in water also curved towards their cut surface. Coating a root's cut surface with a mucilage-like substance minimizes curvature. These results suggest that the outer cell-layers of the root, especially the epidermis, play an important role in root gravicurvature, and the gravitropic signals emanating from the root tip can move apoplastically through mucilage.

Grasses suppress shoot-borne roots to conserve water during drought

USDA-ARS?s Scientific Manuscript database

Many important crops are members of the Poaceae family, and develop fibrous root systems characterized by a high-degree of root initiation from the basal nodes of the shoot, termed the crown. While this post-embryonic shoot-borne root system represents the major conduit for water uptake, little is k...

Cell wall compositional changes during incubation of plant roots measured by mid-infrared diffuse reflectance spectroscopy and fiber analysis

USDA-ARS?s Scientific Manuscript database

Plant roots, particularly the constituents of root cell walls (hemicellulose, cellulose and lignin), are important contributors to soil organic matter. Little is known about the cell wall composition of many important crop species or compositional changes as roots decay. The objectives of this stu...

Spatial regression between soil surface elevation, water storage in root zone and biomass productivity of alfalfa within an irrigated field

NASA Astrophysics Data System (ADS)

Zeyliger, Anatoly; Ermolaeva, Olga

2014-05-01

Efficiency of water use for the irrigation purposes is connected to the variety of circumstances, factors and processes appearing along the transportation path of water from its sources to the root zone of the plant. Water efficiency of agricultural irrigation is connected with variety of circumstances, the impacts and the processes occurring during the transportation of water from water sources to plant root zone. Agrohydrological processes occur directly at the irrigated field, these processes linked to the infiltration of the applied water subsequent redistribution of the infiltrated water within the root zone. One of them are agrohydrological processes occurring directly on an irrigated field, connected with infiltration of water applied for irrigation to the soil, and the subsequent redistribution of infiltrated water in the root zone. These processes have the strongly pronounced spatial character depending on the one hand from a spatial variation of some hydrological characteristics of soils, and from other hand with distribution of volume of irrigation water on a surface of the area of an irrigated field closely linked with irrigation technology used. The combination of water application parameters with agrohydrological characteristics of soils and agricultural vegetation in each point at the surface of an irrigated field leads to formation of a vector field of intensity of irrigation water. In an ideal situation, such velocity field on a soil surface should represent uniform set of vertically directed collinear vectors. Thus values of these vectors should be equal to infiltration intensities of water inflows on a soil surface. In soil profile the field of formed intensities of a water flow should lead to formation in it of a water storage accessible to root system of irrigated crops. In practice this ideal scheme undergoes a lot of changes. These changes have the different nature, the reasons of occurrence and degree of influence on the processes connected with formation of water flow and water storage. The major changes are formed as a result of imposing of the intensity fields on a soil surface and its field capillary infiltration rate. Excess of the first intensity over the second in each point of soil surface leads to formation of a layer of intensity of water not infiltrated in soil. Thus generate the new field of vectors of intensity which can consist of vertically directed vector of speed of evaporation, a quasi horizontal vector of intensity of a surface water flow and quasi vertical vector of intensity of a preferential flow directed downwards. Principal cause of excess of irrigation water application intensity over capillary infiltration rate can be on the one hand spatial non-uniformity of irrigation water application, and with other spatial variability of capillary infiltration rate, connected with spatial variability of water storage in the top layers of soil. As a result the spatial redistribution of irrigation water over irrigated filed forms distortions of ideal model of irrigation water storage in root zone of soil profile. The major differences consist in increasing of water storage in the depressions of a relief of an irrigated field and accordingly in their reduction on elevated zones of a relief, as well as losses of irrigation water outside of boundaries of a root zone of an irrigated field, in vertical, and horizontal directions. One of key parameters characterizing interaction between irrigation technology and soil state an irrigated field are intensity of water application, intensity and volume of a capillary infiltration, the water storage in root zone at the moment of infiltration starting and a topography of an irrigated field. Fnalyzing of spatial links between these characteristics a special research had been carried out on irrigated by sprinkler machine called Fregate at alfalfa field during the summer of 2012. This research carried out at experimental farm of the research institute VolgNIIGiM situated at a left bank of Volga River of Saratov Region of Russia (N51.384650°, E46.055890°). The digital elevation model of soil surface has been created, as well as monitoring of spatial water storage with EM 38 device and of a biomass were carried out. Layers of corresponding spatial data have been created and analyzed. The carried out analysis of spatial regresses has shown presence of links between productivity of a biomass of a alfalfa, water storage and topography. The obtained results shows the significance to include spatial characteristics of the topography and water storage to the irrigation models, as well as adaptation of sprinkler technology to allow differentiate the volume and rate of the applied water within the field. Special attention should be done to quantify relationships between uniform technology of water application by sprinkler and spatial nonuniformity of moisture storage (zoning of high soil moisture in depressions) in soil and as consequence of infiltration capacity.

Development of Molecular Markers in Safflower (Carthamus tinctorius L.)

USDA-ARS?s Scientific Manuscript database

Safflower (Carthamus tinctorius L.) is an oilseed crop considered to be one of the most drought tolerant crops in the world. An extensive rooting system gives safflower the ability to utilize water unavailable to most crops and scavenge nutrients leached down the soil profile. Recently characterized...

Soil Functional Zone Management: A Vehicle for Enhancing Production and Soil Ecosystem Services in Row-Crop Agroecosystems.

PubMed

Williams, Alwyn; Kane, Daniel A; Ewing, Patrick M; Atwood, Lesley W; Jilling, Andrea; Li, Meng; Lou, Yi; Davis, Adam S; Grandy, A Stuart; Huerd, Sheri C; Hunter, Mitchell C; Koide, Roger T; Mortensen, David A; Smith, Richard G; Snapp, Sieglinde S; Spokas, Kurt A; Yannarell, Anthony C; Jordan, Nicholas R

2016-01-01

There is increasing global demand for food, bioenergy feedstocks and a wide variety of bio-based products. In response, agriculture has advanced production, but is increasingly depleting soil regulating and supporting ecosystem services. New production systems have emerged, such as no-tillage, that can enhance soil services but may limit yields. Moving forward, agricultural systems must reduce trade-offs between production and soil services. Soil functional zone management (SFZM) is a novel strategy for developing sustainable production systems that attempts to integrate the benefits of conventional, intensive agriculture, and no-tillage. SFZM creates distinct functional zones within crop row and inter-row spaces. By incorporating decimeter-scale spatial and temporal heterogeneity, SFZM attempts to foster greater soil biodiversity and integrate complementary soil processes at the sub-field level. Such integration maximizes soil services by creating zones of 'active turnover', optimized for crop growth and yield (provisioning services); and adjacent zones of 'soil building', that promote soil structure development, carbon storage, and moisture regulation (regulating and supporting services). These zones allow SFZM to secure existing agricultural productivity while avoiding or minimizing trade-offs with soil ecosystem services. Moreover, the specific properties of SFZM may enable sustainable increases in provisioning services via temporal intensification (expanding the portion of the year during which harvestable crops are grown). We present a conceptual model of 'virtuous cycles', illustrating how increases in crop yields within SFZM systems could create self-reinforcing feedback processes with desirable effects, including mitigation of trade-offs between yield maximization and soil ecosystem services. Through the creation of functionally distinct but interacting zones, SFZM may provide a vehicle for optimizing the delivery of multiple goods and services in agricultural systems, allowing sustainable temporal intensification while protecting and enhancing soil functioning.

Soil Functional Zone Management: A Vehicle for Enhancing Production and Soil Ecosystem Services in Row-Crop Agroecosystems

PubMed Central

Williams, Alwyn; Kane, Daniel A.; Ewing, Patrick M.; Atwood, Lesley W.; Jilling, Andrea; Li, Meng; Lou, Yi; Davis, Adam S.; Grandy, A. Stuart; Huerd, Sheri C.; Hunter, Mitchell C.; Koide, Roger T.; Mortensen, David A.; Smith, Richard G.; Snapp, Sieglinde S.; Spokas, Kurt A.; Yannarell, Anthony C.; Jordan, Nicholas R.

2016-01-01

There is increasing global demand for food, bioenergy feedstocks and a wide variety of bio-based products. In response, agriculture has advanced production, but is increasingly depleting soil regulating and supporting ecosystem services. New production systems have emerged, such as no-tillage, that can enhance soil services but may limit yields. Moving forward, agricultural systems must reduce trade-offs between production and soil services. Soil functional zone management (SFZM) is a novel strategy for developing sustainable production systems that attempts to integrate the benefits of conventional, intensive agriculture, and no-tillage. SFZM creates distinct functional zones within crop row and inter-row spaces. By incorporating decimeter-scale spatial and temporal heterogeneity, SFZM attempts to foster greater soil biodiversity and integrate complementary soil processes at the sub-field level. Such integration maximizes soil services by creating zones of ‘active turnover’, optimized for crop growth and yield (provisioning services); and adjacent zones of ‘soil building’, that promote soil structure development, carbon storage, and moisture regulation (regulating and supporting services). These zones allow SFZM to secure existing agricultural productivity while avoiding or minimizing trade-offs with soil ecosystem services. Moreover, the specific properties of SFZM may enable sustainable increases in provisioning services via temporal intensification (expanding the portion of the year during which harvestable crops are grown). We present a conceptual model of ‘virtuous cycles’, illustrating how increases in crop yields within SFZM systems could create self-reinforcing feedback processes with desirable effects, including mitigation of trade-offs between yield maximization and soil ecosystem services. Through the creation of functionally distinct but interacting zones, SFZM may provide a vehicle for optimizing the delivery of multiple goods and services in agricultural systems, allowing sustainable temporal intensification while protecting and enhancing soil functioning. PMID:26904043

A bacterial-type ABC transporter is involved in aluminum tolerance in rice.

PubMed

Huang, Chao Feng; Yamaji, Naoki; Mitani, Namiki; Yano, Masahiro; Nagamura, Yoshiaki; Ma, Jian Feng

2009-02-01

Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. Here, we report that two genes, STAR1 (for sensitive to Al rhizotoxicity1) and STAR2, are responsible for Al tolerance in rice. STAR1 encodes a nucleotide binding domain, while STAR2 encodes a transmembrane domain, of a bacterial-type ATP binding cassette (ABC) transporter. Disruption of either gene resulted in hypersensitivity to aluminum toxicity. Both STAR1 and STAR2 are expressed mainly in the roots and are specifically induced by Al exposure. Expression in onion epidermal cells, rice protoplasts, and yeast showed that STAR1 interacts with STAR2 to form a complex that localizes to the vesicle membranes of all root cells, except for those in the epidermal layer of the mature zone. When expressed together in Xenopus laevis oocytes, STAR1/2 shows efflux transport activity specific for UDP-glucose. Furthermore, addition of exogenous UDP-glucose rescued root growth in the star1 mutant exposed to Al. These results indicate that STAR1 and STAR2 form a complex that functions as an ABC transporter, which is required for detoxification of Al in rice. The ABC transporter transports UDP-glucose, which may be used to modify the cell wall.

Crop Rotation and Races of Meloidogyne incognita in Cotton Root-knot Management

PubMed Central

Kirkpatrick, T. L.; Sasser, J. N.

1984-01-01

The influence o f various crop rotations and nematode inoculum levels on subsequent population densities of Meloidogyne incognita races 1 and 3 were studied in microplots. Ten different 3-year sequences o f cotton, corn, peanut, or soybean, all with cotton as the 3rd-year crop, were grown in microplots infested with each race. Cotton monoculture, two seasons o f corn, or cotton followed by corn resulted in high race 3 population densities and severe root galling on cotton the 3rd year. Peanut for 2 years preceding cotton most effectively decreased the race 3 population and root galls on cotton the 3rd year. Race 1 did not significantly influence cotton growth or yield at initial populations of up to 5,000 eggs/500 cm³ soil. At 5,000 eggs/500 cm³, cotton growth was suppressed by race 3 but yield was not affected. PMID:19294030

Erosion control in orchards and vineyards by a new soil and cover crop management method

NASA Astrophysics Data System (ADS)

Hartl, Wilfried; Guettler, Hans; Auer, Karl; Erhart, Eva

2016-04-01

Cover crops are the basis for an erosion-free soil management in orchards and vineyards. The soil cover provided by the foliage and the intensive root formation counteract erosion. Cover crops provide the soil microfauna with fresh organic matter which improves soil structure and porosity. The water demand of cover crops, however, may pose problems for the water supply of the trees and vines in dry seasons. Therefore it is necessary to adjust the growth of the cover crops to the actual water conditions. In years with ample precipitation cover crops may be allowed lush vegetative growth till flowering and formation of seeds. In dry years, the growth of the cover crop must be restricted to stop the competition for water, sometimes even by cutting off the cover crop roots. The course of the weather is incalculable and rainfall may be very variable during the year, so it is sometimes necessary to adust the cover crop management several times a year. A new special equipment, which can perform all the tasks necessary for the flexible cover crop management has been developed together with the agricultural machinery manufacturers Bodenwerkstatt Ertl-Auer GmbH and Güttler GmbH. The GreenManager® device consists of three modules, namely a specific type of cultivator, a harrow and a prismatic roller with seeding equipment, which can be used separately or in combination. The GreenManager® can reduce cover crops by flattening the plants in the whole row middle, by bringing down the cover crops with the harrow, or by horizontally cutting the cover crop roots a few centimetres beneath the soil surface in the central part of the row middle or in the whole row middle. These measures reduce the water competition by cover crops without generating further losses of soil moisture through intensive soil cultivation. At the same time the risk of soil erosion is kept to a minimum, because the soil remains covered by dead plant biomass. In one passage the GreenManager® can direct-drill large-grain cover crop seeds and simultaneously cut the roots of the standing vegetation in the row middle, plus at the same time sow small-grain seeds over the whole middle. The large grains are placed several centimetres deep with the cultivator, while the small grains are spread on the surface in a seedbed prepared by the prismatic roller or the harrow module. So it is secured that on rewetting of the soil the next generation of cover crops will be established straight away. In all cases, however, the soil remains covered with living or dead plant biomass, so that the erosion risk is minimized. Uppermost goals of the flexible cover crop management are the well-being of the fruit trees and vines and maximum erosion protection of the soil.

Transition zone cells reach G2 phase before initiating elongation in maize root apex

PubMed Central

Alarcón, M. Victoria

2017-01-01

ABSTRACT Root elongation requires cell divisions in the meristematic zone and cell elongation in the elongation zone. The boundary between dividing and elongating cells is called the transition zone. In the meristem zone, initial cells are continuously dividing, but on the basal side of the meristem cells exit the meristem through the transition zone and enter in the elongation zone, where they stop division and rapidly elongate. Throughout this journey cells are accompanied by changes in cell cycle progression. Flow cytometry analysis showed that meristematic cells are in cycle, but exit when they enter the elongation zone. In addition, the percentage of cells in G2 phase (4C) strongly increased from the meristem to the elongation zone. However, we did not observe remarkable changes in the percentage of cells in cell cycle phases along the entire elongation zone. These results suggest that meristematic cells in maize root apex stop the cell cycle in G2 phase after leaving the meristem. PMID:28495964

Plant roots: understanding structure and function in an ocean of complexity

PubMed Central

Ryan, Peter R.; Delhaize, Emmanuel; Watt, Michelle; Richardson, Alan E.

2016-01-01

Background The structure and function of plant roots and their interactions with soil are exciting scientific frontiers that will ultimately reveal much about our natural systems, global water and mineral and carbon cycles, and help secure food supplies into the future. This Special Issue presents a collection of papers that address topics at the forefront of our understanding of root biology. Scope These papers investigate how roots cope with drought, nutrient deficiencies, toxicities and soil compaction as well as the interactions that roots have with soil microorganisms. Roots of model plant species, annual crops and perennial species are studied in short-term experiments through to multi-year trials. Spatial scales range from the gene up to farming systems and nutrient cycling. The diverse, integrated approaches described by these studies encompass root genetics as applied to soil management, as well as documenting the signalling processes occurring between roots and shoots and between roots and soil. Conclusions This Special Issue on roots presents invited reviews and research papers covering a span of topics ranging from fundamental aspects of anatomy, growth and water uptake to roots in crop and pasture systems. Understanding root structure and function and adaptation to the abiotic and biotic stresses encountered in field conditions is important for sustainable agricultural production and better management of natural systems.

Effects of arsenic toxicity on morphological characters in blackgram (Vigna mungo L.) during early growth stage.

PubMed

Shamim, M Z; Pandey, A

2017-07-31

Blackgram is an important pulse crop of the tropic and sub-tropic area and has been identified as a potential crop in many countries. In the south-East Asia arsenic toxicity in soil and water is one of the most environmental problems. Crop productivity is highly affected by cultivation in arsenic polluted soil or irrigation through arsenic polluted water. The present study was conducted to evaluate the effect of arsenic (As) on fresh shoot length, fresh shoot weight, fresh root length, fresh shoot weight and total fresh biomass, The results indicate that root length is more affected than shoot length due to arsenic toxicity. The fresh shoot weight observed was more affected than fresh root weight. This study indicates that arsenic toxicity causes the deleterious effect on blackgram growth. The toxic effect of blackgram depends on the genotypic variability. Some blackgram genotypes show very less toxic effect of arsenic due to its genetic makeup. Experimental findings of study indicate that longer root length and more shoot weight in arsenic stress condition may be tolerant blackgram genotype to arsenic toxicity.

Use of pepper crop residues for the control of root-knot nematodes.

PubMed

Piedra Buena, A; García-Alvarez, A; Díez-Rojo, M A; Ros, C; Fernández, P; Lacasa, A; Bello, A

2007-11-01

The biofumigant effect of pepper crop residues (PCR) for controlling Meloidogyne incognita populations was evaluated. Under laboratory conditions, 0, 5, 10 and 20 g PCR were applied to 500 g nematode infested soil, with four replicates per treatment. After 20 days at 25 degrees C, PCR reduced significantly M. incognita populations and root galling indices in susceptible tomato cv. Marmande, and increased K, N and organic C in soil. In the field, biofumigation with PCR combined with fresh animal manures (with and without plastic cover), methyl bromide, and a control were evaluated through root galling indices on a pepper crop. Each treatment, except for the control, had a grafted and non-grafted susceptible pepper sub-treatment, with three replicates. Root galling indices were lower, and yields higher, on grafted plants, biofumigation with PCR and plastic cover, with similar values as MB treatment, suggesting that biofumigation with PCR is an efficient non-chemical alternative to control M. incognita populations, especially when applied with plastic cover, nitrogen-rich organic matter and followed by grafting on resistant pepper.

Farmer's response to changing climate in North East India

NASA Astrophysics Data System (ADS)

De, Utpal Kumar

2015-02-01

Diversification of land use in the cultivation of various crops provides an alternative way to moderate the climate risk. By choosing alternative crops that are resilient to various weather parameters, farmers can reduce the crop damage and achieve optimum output from their limited land resources. Apart from other adaptation measures, crop diversity can reflect farmers' response towards changing climate uncertainty. This paper tries to examine the changing climatic condition through spatio-temporal variation of two important weather variables (precipitation and temperature) in the largest North-East Indian state, Assam, since 1950. It is examined by the variation in crop diversification index. We have used (1) Herfindahl Index for measuring degree of diversification and (2) locational quotient for measuring the changes in the regional crop concentration. The results show that, in almost all the districts, crop specialization has been taking place slowly and that happened mostly in the last phase of our study. The hilly and backward districts recorded more diversification but towards lower value crops. It goes against the normal feature of crop diversification where farmers diversify in favour of high value crops. Employing ordinary least squares method and/or Fixed Effect model, irrigation is found to have significant impact on crop diversification; while the flood plain zones and hill zones are found to have better progress in this regard, which has been due to the survival necessity of poor farmers living the zone. Thus crop diversity does not reflect very significant response from the farmers' side towards changing weather factors (except rainfall) though they have significant impact on the productivity of various crops, and thus profitability. The study thus suggests the necessity for rapid and suitable diversification as alternative climate change mitigation in the long run.

Role of Subsurface Physics in the Assimilation of Surface Soil Moisture Observations

NASA Technical Reports Server (NTRS)

Reichle, R. H.

2010-01-01

Root zone soil moisture controls the land-atmosphere exchange of water and energy and exhibits memory that may be useful for climate prediction at monthly scales. Assimilation of satellite-based surface soil moisture observations into a land surface model is an effective way to estimate large-scale root zone soil moisture. The propagation of surface information into deeper soil layers depends on the model-specific representation of subsurface physics that is used in the assimilation system. In a suite of experiments we assimilate synthetic surface soil moisture observations into four different models (Catchment, Mosaic, Noah and CLM) using the Ensemble Kalman Filter. We demonstrate that identical twin experiments significantly overestimate the information that can be obtained from the assimilation of surface soil moisture observations. The second key result indicates that the potential of surface soil moisture assimilation to improve root zone information is higher when the surface to root zone coupling is stronger. Our experiments also suggest that (faced with unknown true subsurface physics) overestimating surface to root zone coupling in the assimilation system provides more robust skill improvements in the root zone compared with underestimating the coupling. When CLM is excluded from the analysis, the skill improvements from using models with different vertical coupling strengths are comparable for different subsurface truths. Finally, the skill improvements through assimilation were found to be sensitive to the regional climate and soil types.

The Farm Process Version 2 (FMP2) for MODFLOW-2005 - Modifications and Upgrades to FMP1

USGS Publications Warehouse

Schmid, Wolfgang; Hanson, R.T.

2009-01-01

The ability to dynamically simulate the integrated supply-and-demand components of irrigated agricultural is needed to thoroughly understand the interrelation between surface water and groundwater flow in areas where the water-use by vegetation is an important component of the water budget. To meet this need, the computer program Farm Process (FMP1) was updated and refined for use with the U.S. Geological Survey's MODFLOW-2005 groundwater-flow model, and is referred to as MF2005-FMP2. The updated program allows the simulation, analysis, and management of nearly all components of human and natural water use. MF2005-FMP2 represents a complete hydrologic model that fully links the movement and use of groundwater, surface water, and imported water for water consumption of irrigated agriculture, but also of urban use, and of natural vegetation. Supply and demand components of water use are analyzed under demand-driven and supply-constrained conditions. From large- to small-scale settings, the MF2005-FMP2 has the unique set of capabilities to simulate and analyze historical, present, and future conditions. MF2005-FMP2 facilitates the analysis of agricultural water use where little data is available for pumpage, land use, or agricultural information. The features presented in this new version of FMP2 along with the linkages to the Streamflow Routing (SFR), Multi-Node Well (MNW), and Unsaturated Zone Flow (UZF) Packages prevents mass loss to an open system and helps to account for 'all of the water everywhere and all of the time'. The first version, FMP1 for MODFLOW-2000, is limited to (a) transpiration uptake from unsaturated root zones, (b) on-farm efficiency defined solely by farm and not by crop type, (c) a simulation of water use and returnflows related only to irrigated agriculture and not also to non-irrigated vegetation, (d) a definition of consumptive use as potential crop evapotranspiration, (e) percolation being instantly recharged to the uppermost active aquifer, (f) automatic routing of returnflow from runoff either to reaches of tributary stream segments adjacent to a farm or to one reach nearest to the farm's lowest elevation, (g) farm-well pumping from cell locations regardless of whether an irrigation requirement from these cells exists or not, and (h) specified non-routed water transfers from an undefined source outside the model domain. All of these limitations are overcome in MF2005-FMP2. The new features include (a) simulation of transpiration uptake from variably saturated, fully saturated, or ponded root zones (for example, for crops like rice or riparian vegetation), (b) definition of on-farm efficiency not only by farm but also by crop, (c) simulation of water use and returnflow from non-irrigated vegetation (for example, rain-fed agriculture or native vegetation), (d) use of crop coefficients and reference evapotranspiration, (e) simulation of the delay between percolation from farms through the unsaturated zone and recharge into the uppermost active aquifer by linking FMP2 to the UZF Package, (f) an option to manually control the routing of returnflow from farm runoff to streams, (g) an option to limit pumping to wells located only in cells where an irrigation requirement exists, and (h) simulation of water transfers to farms from a series of well fields (for example, recovery well field of an aquifer-storage-and-recovery system, ASR). In addition to the output of an economic budget for each farm between irrigation demand and supply ('Farm Demand and Supply Budget' in FMP1), a new output option called 'Farm Budget' was created for FMP2, which allows the user to track all physical flows into and out of a water accounting unit at all times. Such a unit can represent individual farms, farming districts, natural areas, or urban areas. The example model demonstrates the application of MF2005-FMP2 with delayed recharge through an unsaturated zone, rejected infiltration in a riparian area, changes in de

The Root Transition Zone: A Hot Spot for Signal Crosstalk.

PubMed

Kong, Xiangpei; Liu, Guangchao; Liu, Jiajia; Ding, Zhaojun

2018-05-01

The root transition zone (TZ), located between the apical meristem and basal elongation region, has a unique role in root growth and development. The root TZ is not only the active site for hormone crosstalk, but also the perception site for various environmental cues, such as aluminum (Al) stress and low phosphate (Pi) stress. We propose that the root TZ is a hot spot for the integration of diverse inputs from endogenous (hormonal) and exogenous (sensorial) stimuli to control root growth. Copyright © 2018 Elsevier Ltd. All rights reserved.

Physiological response and sulfur metabolism of the V. dahliae-infected tomato plants in tomato/potato onion companion cropping

PubMed Central

Fu, Xuepeng; Li, Chunxia; Zhou, Xingang; Liu, Shouwei; Wu, Fengzhi

2016-01-01

Companion cropping with potato onions (Allium cepa var. agrogatum Don.) can enhance the disease resistance of tomato plants (Solanum lycopersicum) to Verticillium dahliae infection by increasing the expressions of genes related to disease resistance. However, it is not clear how tomato plants physiologically respond to V. dahliae infection and what roles sulfur plays in the disease-resistance. Pot experiments were performed to examine changes in the physiology and sulfur metabolism of tomato roots infected by V. dahliae under the companion cropping (tomato/potato onion). The results showed that the companion cropping increased the content of total phenol, lignin and glutathione and increased the activities of peroxidase, polyphenol oxidase and phenylalanine ammonia lyase in the roots of tomato plants. RNA-seq analysis showed that the expressions of genes involved in sulfur uptake and assimilation, and the formation of sulfur-containing defense compounds (SDCs) were up-regulated in the V. dahlia-infected tomatoes in the companion cropping. In addition, the interactions among tomato, potato onion and V. dahliae induced the expression of the high- affinity sulfate transporter gene in the tomato roots. These results suggest that sulfur may play important roles in tomato disease resistance against V. dahliae. PMID:27808257

Dynamics of oxygen and carbon dioxide in rhizospheres of Lobelia dortmanna - a planar optode study of belowground gas exchange between plants and sediment.

PubMed

Lenzewski, Nikola; Mueller, Peter; Meier, Robert Johannes; Liebsch, Gregor; Jensen, Kai; Koop-Jakobsen, Ketil

2018-04-01

Root-mediated CO 2 uptake, O 2 release and their effects on O 2 and CO 2 dynamics in the rhizosphere of Lobelia dortmanna were investigated. Novel planar optode technology, imaging CO 2 and O 2 distribution around single roots, provided insights into the spatiotemporal patterns of gas exchange between roots, sediment and microbial community. In light, O 2 release and CO 2 uptake were pronounced, resulting in a distinct oxygenated zone (radius: c. 3 mm) and a CO 2 -depleted zone (radius: c. 2 mm) around roots. Simultaneously, however, microbial CO 2 production was stimulated within a larger zone around the roots (radius: c. 10 mm). This gave rise to a distinct pattern with a CO 2 minimum at the root surface and a CO 2 maximum c. 2 mm away from the root. In darkness, CO 2 uptake ceased, and the CO 2 -depleted zone disappeared within 2 h. By contrast, the oxygenated root zone remained even after 8 h, but diminished markedly over time. A tight coupling between photosynthetic processes and the spatiotemporal dynamics of O 2 and CO 2 in the rhizosphere of Lobelia was demonstrated, and we suggest that O 2 -induced stimulation of the microbial community in the sediment increases the supply of inorganic carbon for photosynthesis by building up a CO 2 reservoir in the rhizosphere. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

Utilization of urea, ammonia, nitrite, and nitrate by crop plants in a Controlled Ecological Life Support System (CELSS)

NASA Technical Reports Server (NTRS)

Huffaker, R. C.; Rains, D. W.; Qualset, C. O.

1982-01-01

The utilization of nitrogen compounds by crop plants is studied. The selection of crop varieties for efficient production using urea, ammonia, nitrite, and nitrate, and the assimilation of mixed nitrogen sources by cereal leaves and roots are discussed.

Soil profile organic carbon as affected by tillage and cropping systems

USDA-ARS?s Scientific Manuscript database

Reports on the long-term effects of tillage and cropping systems on soil organic carbon (SOC) sequestration in the entire rooting profile are limited. A long-term experiment with three cropping systems [continuous corn (CC), continuous soybean (CSB), and soybean-corn (SB-C)] in six primary tillage s...

Crop residues for advanced biofuels workshop: A synposis

USDA-ARS?s Scientific Manuscript database

Crop residues are being harvested for a variety of purposes including their use as livestock feed and to produce advanced biofuels. Crop residue harvesting, by definition, reduces the potential annual carbon input to the soil from aboveground biomass but does not affect input from plant roots. The m...

7 CFR 319.59-1 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-01-01

... triticale (Triticum aestivum X Secale cereale) used for consumption or processing. Hay. Host crops cut and... host crop. Host crops. Plants or plant parts, including grain, seed, or hay, of wheat (Triticum..., a vine, a cutting, a graft, a scion, a bud, a bulb, a root, and a seed. Seed. Wheat (Triticum...

7 CFR 319.59-1 - Definitions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... triticale (Triticum aestivum X Secale cereale) used for consumption or processing. Hay. Host crops cut and... host crop. Host crops. Plants or plant parts, including grain, seed, or hay, of wheat (Triticum..., a vine, a cutting, a graft, a scion, a bud, a bulb, a root, and a seed. Seed. Wheat (Triticum...

7 CFR 319.59-1 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-01-01

... triticale (Triticum aestivum X Secale cereale) used for consumption or processing. Hay. Host crops cut and... host crop. Host crops. Plants or plant parts, including grain, seed, or hay, of wheat (Triticum..., a vine, a cutting, a graft, a scion, a bud, a bulb, a root, and a seed. Seed. Wheat (Triticum...

7 CFR 319.59-1 - Definitions.

Code of Federal Regulations, 2013 CFR

2013-01-01

... triticale (Triticum aestivum X Secale cereale) used for consumption or processing. Hay. Host crops cut and... host crop. Host crops. Plants or plant parts, including grain, seed, or hay, of wheat (Triticum..., a vine, a cutting, a graft, a scion, a bud, a bulb, a root, and a seed. Seed. Wheat (Triticum...

Beta vulgaris crop types: Genomic signatures of selection (GSS) using next generation sequencing of pooled samples

USDA-ARS?s Scientific Manuscript database

Beta vulgaris crop types represent highly diverged populations with distinct phenotypes resulting from long-term selection. Differential end use in the crop types includes: leaf quality (chard/leaf beet), root enlargement and biomass, (table beet, fodder beet, sugar beet), and secondary metabolite a...

Dynamic precision phenotyping reveals mechanism of crop tolerance to root herbivory

USDA-ARS?s Scientific Manuscript database

The western corn rootworm, Diabrotica virgifera virgifera (LeConte) is a major pest of maize, Zea mays L. Over the years, this pest has repeatedly shown its resilience and adaptability not only to traditional crop management strategies including chemical pesticides and crop rotation, but also to de...

Root Gravitropism: Quantification, Challenges, and Solutions.

PubMed

Muller, Lukas; Bennett, Malcolm J; French, Andy; Wells, Darren M; Swarup, Ranjan

2018-01-01

Better understanding of root traits such as root angle and root gravitropism will be crucial for development of crops with improved resource use efficiency. This chapter describes a high-throughput, automated image analysis method to trace Arabidopsis (Arabidopsis thaliana) seedling roots grown on agar plates. The method combines a "particle-filtering algorithm with a graph-based method" to trace the center line of a root and can be adopted for the analysis of several root parameters such as length, curvature, and stimulus from original root traces.

Study of Biometric Datum of Green Manure Crops in the Process of Biological Soil Reclamation on the Territory of Coal Producer Ojsc “Mine No 12”In The Kemerovo Region

NASA Astrophysics Data System (ADS)

Yakovchenko, M. A.; Pinchuk, L. G.; Kolosolapova, A. A.; Alankina, D. N.

2017-05-01

The article presents the results of a study of green manure crops of different kinds, it is determined that the best growth results were obtained with incorporation of hydrogel in the substratum, and particularly in the clay, so as due to the amount of moisture in the substratum, clay is more hygroscopic and physico-chemical properties of hydrogel significantly increase moisture capacity of the substratum. Sowing field germination of all crops is much higher in the clay then in soil. Territories with the hydrogel usage showed a greater plant density per 1m2. Almost all crops with the major growth of herb were sowed in the clay with hydrogel addition, the crops height increased by 2.5 times. The only exception was Rye, the difference in height between its plants in “soil + hydrogel” and “clay+hydrogel” was less than 1%. It was registered that the root growth of Phacelia in “clay+hydrogel” increased by 2.5 times. While the root growth of Rump, on the contrary, increased in mellow soil with hydrogel by 43%. Other kinds of crops did not perform any difference in their root length. The increase of herbage in mixtures of green manure crops was negligible, whereas mono-sowing of such crops as Esparcet, Rump and Buckwheat showed the greatest increase of herbage in comparison to the soil lots and other sowing variants. The greatest increase of herbage among lots without hydrogel addition was performed on the clay ones: Esparcet - 250%, Buckwheat - 172% Rump - 123% Phacelia - 77.5%. The best results of herbage accumulation were showed by Esparcet, Buckwheat, Rump, Phacelia.

Identifying the transition to the maturation zone in three ecotypes of Arabidopsis thaliana roots.

PubMed

Cajero Sánchez, Wendy; García-Ponce, Berenice; Sánchez, María de la Paz; Álvarez-Buylla, Elena R; Garay-Arroyo, Adriana

2018-01-01

The Arabidopsis thaliana (hereafter Arabidopsis) root has become a useful model for studying how organ morphogenesis emerge from the coordination and balance of cell proliferation and differentiation, as both processes may be observed and quantified in the root at different stages of development. Hence, being able to objectively identify and delimit the different stages of root development has been very important. Up to now, three different zones along the longitudinal axis of the primary root of Arabidopsis, have been identified: the root apical meristematic zone (RAM) with two domains [the proliferative (PD) and the transition domain (TD)], the elongation zone (EZ) and the maturation zone (MZ). We previously reported a method to quantify the length of the cells of the meristematic and the elongation zone, as well as the boundaries or transitions between the root domains along the growing part of the Arabidopsis root. In this study, we provide a more accurate criterion to identify the MZ. Traditionally, the transition between the EZ to the MZ has been established by the emergence of the first root-hair bulge in the epidermis, because this emergence coincides with cell maturation in this cell type. But we have found here that after the emergence of the first root-hair bulge some cells continue to elongate and we have confirmed this in three different Arabidopsis ecotypes. We established the limit between the EZ and the MZ by looking for the closest cortical cell with a longer length than the average cell length of 10 cells after the cortical cell closest to the epidermal cell with the first root-hair bulge in these three ecotypes. In Col-0 and Ws this cell is four cells above the one with the root hair bulge and, in the Ler ecotype, this cell is five cells above. To unambiguously identifying the site at which cells stop elongating and attain their final length and fate at the MZ, we propose to calculate the length of completely elongated cortical cells counting 10 cells starting from the sixth cell above the cortical cell closest to the epidermal cell with the first root-hair bulge. We validated this proposal in the three ecotypes analyzed and consider that this proposal may aid at having a more objective way to characterize root phenotypes and compare among them.

Identifying the transition to the maturation zone in three ecotypes of Arabidopsis thaliana roots

PubMed Central

Cajero Sánchez, Wendy; García-Ponce, Berenice; Sánchez, María de la Paz; Álvarez-Buylla, Elena R.; Garay-Arroyo, Adriana

2018-01-01

ABSTRACT The Arabidopsis thaliana (hereafter Arabidopsis) root has become a useful model for studying how organ morphogenesis emerge from the coordination and balance of cell proliferation and differentiation, as both processes may be observed and quantified in the root at different stages of development. Hence, being able to objectively identify and delimit the different stages of root development has been very important. Up to now, three different zones along the longitudinal axis of the primary root of Arabidopsis, have been identified: the root apical meristematic zone (RAM) with two domains [the proliferative (PD) and the transition domain (TD)], the elongation zone (EZ) and the maturation zone (MZ). We previously reported a method to quantify the length of the cells of the meristematic and the elongation zone, as well as the boundaries or transitions between the root domains along the growing part of the Arabidopsis root. In this study, we provide a more accurate criterion to identify the MZ. Traditionally, the transition between the EZ to the MZ has been established by the emergence of the first root-hair bulge in the epidermis, because this emergence coincides with cell maturation in this cell type. But we have found here that after the emergence of the first root-hair bulge some cells continue to elongate and we have confirmed this in three different Arabidopsis ecotypes. We established the limit between the EZ and the MZ by looking for the closest cortical cell with a longer length than the average cell length of 10 cells after the cortical cell closest to the epidermal cell with the first root-hair bulge in these three ecotypes. In Col-0 and Ws this cell is four cells above the one with the root hair bulge and, in the Ler ecotype, this cell is five cells above. To unambiguously identifying the site at which cells stop elongating and attain their final length and fate at the MZ, we propose to calculate the length of completely elongated cortical cells counting 10 cells starting from the sixth cell above the cortical cell closest to the epidermal cell with the first root-hair bulge. We validated this proposal in the three ecotypes analyzed and consider that this proposal may aid at having a more objective way to characterize root phenotypes and compare among them. PMID:29497470

Using Hydrus 2-D to assess the emitters optimal position for Eggplants under surface and subsurface drip irrigation

NASA Astrophysics Data System (ADS)

Ghazouani, Hiba; Autovino, Dario; Douh, Boutheina; Boujelben, Abdel Hamid; Provenznao, Giuseppe; Rallo, Giovanni

2014-05-01

The main objective of the work is to assess the emitters optimal position for Eggplant crop (Solanum melongena L.) in a sandy loam soil irrigated with surface or subsurface drip irrigation systems, by means of field measurements and simulations carried out with Hydrus-2D model. Initially, the performance of the model is evaluated on the basis of the comparison between simulated soil water contents (SWC) and the corresponding measured in two plots, in which laterals with coextruded emitters are laid on the soil surface (T0) and at 20 cm depth (T20), respectively. In order to choose the best position of the lateral, the results of different simulation runs, carried out by changing the installation depth of the lateral (5 cm, 15 cm and 45 cm) were compared in terms of ratio between actual transpiration and total amount of water provided during the entire growing season (WUE). Experiments were carried out, from April to June 2007, at Institut Supérieur Agronomique de Chott Mériem (Sousse, Tunisia). In the two plots, plants were spaced 0.40 m along the row and 1.2 m between the rows. Each plot was irrigated by means of laterals with coextruded emitters spaced 0.40 m and discharging a flow rate equal to 4.0 l h-1 at a nominal pressure of 100 kPa. In each plot, spatial and temporal variability of SWCs were acquired with a Time Domain Reflectometry probe (Trime-FM3), on a total of four 70 cm long access tubes, installed along the direction perpendicular to the plant row, at distances of 0, 20, 40 and 60 cm from the emitter. Irrigation water was supplied, accounting for the rainfall, every 7-10 days at the beginning of the crop cycle (March-April) and approximately once a week during the following stages till the harvesting (May-June), for a total of 15 one-hour watering. To run the model, soil evaporation, Ep, and crop transpiration, Tp were determined according to the modified FAO Penman-Monteith equation and the dual crop coefficient approach, whereas soil hydraulics and rooting system parameters were experimentally determined. Simulated SWCs resulted fairly close to the corresponding measured at different distances from the emitter and therefore the model was able to predict SWCs in the root zone with values of the Root Mean Square Error generally lower than 4%. This result is consequent to the appropriate schematization of the root distribution, as well as of the root water uptake. Simulations also evidenced the contribute of soil evaporation losses when laterals are installed from the soil surface to a 20 cm depth, whereas significant water losses by deep percolation occured at the highest installation depth. The values of WUE associated to the different examined installation depths tend to a very slight increase when the position of the lateral rises from 0 to 15 cm and start to decrease for the higher depths.

Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.

PubMed

Qu, Lianghuan; Wu, Chunyan; Zhang, Fei; Wu, Yangyang; Fang, Chuanying; Jin, Cheng; Liu, Xianqing; Luo, Jie

2016-10-01

Pectin synthesis and modification are vital for plant development, although the underlying mechanisms are still not well understood. Here, we report the functional characterization of the OsTSD2 gene, which encodes a putative methyltransferase in rice. All three independent T-DNA insertion lines of OsTSD2 displayed dwarf phenotypes and serial alterations in different zones of the root. These alterations included abnormal cellular adhesion and schizogenous aerenchyma formation in the meristematic zone, inhibited root elongation in the elongation zone, and higher lateral root density in the mature zone. Immunofluorescence (with LM19) and Ruthenium Red staining of the roots showed that unesterified homogalacturonan (HG) was increased in Ostsd2 mutants. Biochemical analysis of cell wall pectin polysaccharides revealed that both the monosaccharide composition and the uronic acid content were decreased in Ostsd2 mutants. Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification. A hypothesis to explain the relationship among OsTSD2, pectin methylesterification, and root development is proposed, based on pectin's function in regional cell extension/division in a zone-dependent manner. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Effect of selenium application on arsenic uptake in rice (Oryza sativa L.).

PubMed

Kaur, Sumandeep; Singh, Dhanwinder; Singh, Kuldip

2017-09-01

Alluvial aquifers of the agrarian state of Punjab of southwestern arid zone used for irrigation of rice crops are rich in arsenic concentration. In the present study, rice (Oryza sativa L.) crops were raised in pots in a greenhouse with a purpose to study whether selenium (Se) application was effective in ameliorating As uptake. The rice crop was irrigated with arsenic laced water (0, 2.5, 5.0, 10.0 μM As L -1 ) throughout the growing period, without and with selenium (0.05 and 0.10 mg kg -1 ) added through mustard biomass, grown ex situ in seleniferous soil. Arsenic uptake and dry matter yield in different parts of the rice crop were assayed after application of As alone and simultaneous supplementations (As + Se). An antagonistic interaction between Se and As was observed. Addition of As through irrigation water significantly reduced yield of rice grain, straw and root. However, subsequent addition of Se helped in mitigating the harmful effect of As and countered the yield reduction caused due to As toxicity. The effect of Se on dry matter yield was more pronounced at its higher dose (0.10 mg kg -1 ) as compared to its lower dose (0.05 mg kg -1 ). The presence of Se either alone or added along with As significantly reduced the As concentration and its uptake by different parts of rice and higher reduction in As concentration was observed with addition of the highest level of applied Se (0.10 mg kg -1 ). Our observations indicated that Se supplementation might be favourable to reduce As accumulation and toxicity in rice crops.

Rainwater harvesting and management in rainfed agricultural systems in sub-Saharan Africa - A review

NASA Astrophysics Data System (ADS)

Biazin, Birhanu; Sterk, Geert; Temesgen, Melesse; Abdulkedir, Abdu; Stroosnijder, Leo

Agricultural water scarcity in the predominantly rainfed agricultural system of sub-Saharan Africa (SSA) is more related to the variability of rainfall and excessive non-productive losses, than the total annual precipitation in the growing season. Less than 15% of the terrestrial precipitation takes the form of productive ‘green’ transpiration. Hence, rainwater harvesting and management (RWHM) technologies hold a significant potential for improving rainwater-use efficiency and sustaining rainfed agriculture in the region. This paper outlines the various RWHM techniques being practiced in SSA, and reviews recent research results on the performance of selected practices. So far, micro-catchment and in situ rainwater harvesting techniques are more common than rainwater irrigation techniques from macro-catchment systems. Depending on rainfall patterns and local soil characteristics, appropriate application of in situ and micro-catchment techniques could improve the soil water content of the rooting zone by up to 30%. Up to sixfold crop yields have been obtained through combinations of rainwater harvesting and fertiliser use, as compared to traditional practices. Supplemental irrigation of rainfed agriculture through rainwater harvesting not only reduces the risk of total crop failure due to dry spells, but also substantially improves water and crop productivity. Depending on the type of crop and the seasonal rainfall pattern, the application of RWHM techniques makes net profits more possible, compared to the meagre profit or net loss of existing systems. Implementation of rainwater harvesting may allow cereal-based smallholder farmers to shift to diversified crops, hence improving household food security, dietary status, and economic return. The much needed green revolution and adaptations to climate change in SSA should blend rainwater harvesting ideals with agronomic principles. More efforts are needed to improve the indigenous practices, and to disseminate best practices on a wider scale.

Push-Pull: Chemical Ecology-Based Integrated Pest Management Technology.

PubMed

Khan, Zeyaur; Midega, Charles A O; Hooper, Antony; Pickett, John

2016-07-01

Lepidopterous stemborers, and parasitic striga weeds belonging to the family Orobanchaceae, attack cereal crops in sub-Saharan Africa causing severe yield losses. The smallholder farmers are resource constrained and unable to afford expensive chemicals for crop protection. The push-pull technology, a chemical ecology- based cropping system, is developed for integrated pest and weed management in cereal-livestock farming systems. Appropriate plants were selected that naturally emit signaling chemicals (semiochemicals). Plants highly attractive for stemborer egg laying were selected and employed as trap crops (pull), to draw pests away from the main crop. Plants that repelled stemborer females were selected as intercrops (push). The stemborers are attracted to the trap plant, and are repelled from the main cereal crop using a repellent intercrop (push). Root exudates of leguminous repellent intercrops also effectively control the parasitic striga weed through an allelopathic mechanism. Their root exudates contain flavonoid compounds some of which stimulate germination of Striga hermonthica seeds, such as Uncinanone B, and others that dramatically inhibit their attachment to host roots, such as Uncinanone C and a number of di-C-glycosylflavones (di-CGFs), resulting in suicidal germination. The intercrop also improves soil fertility through nitrogen fixation, natural mulching, improved biomass, and control of erosion. Both companion plants provide high value animal fodder, facilitating milk production and diversifying farmers' income sources. The technology is appropriate to smallholder mixed cropping systems in Africa. Adopted by about 125,000 farmers to date in eastern Africa, it effectively addresses major production constraints, significantly increases maize yields, and is economical as it is based on locally available plants, not expensive external inputs.

From Experiments to Simulations: Downscaling Measurements of Na+ Distribution at the Root-Soil Interface

NASA Astrophysics Data System (ADS)

Perelman, A.; Guerra, H. J.; Pohlmeier, A. J.; Vanderborght, J.; Lazarovitch, N.

2017-12-01

When salinity increases beyond a certain threshold, crop yield will decrease at a fixed rate, according to the Maas and Hoffman model (1976). Thus, it is highly important to predict salinization and its impact on crops. Current models do not consider the impact of the transpiration rate on plant salt tolerance, although it affects plant water uptake and thus salt accumulation around the roots, consequently influencing the plant's sensitivity to salinity. Better model parametrization can improve the prediction of real salinity effects on crop growth and yield. The aim of this research is to study Na+ distribution around roots at different scales using different non-invasive methods, and to examine how this distribution is affected by the transpiration rate and plant water uptake. Results from tomato plants that were grown on rhizoslides (a capillary paper growth system) showed that the Na+ concentration was higher at the root-substrate interface than in the bulk. Also, Na+ accumulation around the roots decreased under a low transpiration rate, supporting our hypothesis. The rhizoslides enabled the root growth rate and architecture to be studied under different salinity levels. The root system architecture was retrieved from photos taken during the experiment, enabling us to incorporate real root systems into a simulation. Magnetic resonance imaging (MRI) was used to observe correlations between root system architectures and Na+ distribution. The MRI provided fine resolution of the Na+ accumulation around a single root without disturbing the root system. With time, Na+ accumulated only where roots were found in the soil and later around specific roots. Rhizoslides allow the root systems of larger plants to be investigated, but this method is limited by the medium (paper) and the dimension (2D). The MRI can create a 3D image of Na+ accumulation in soil on a microscopic scale. These data are being used for model calibration, which is expected to enable the prediction of root water uptake in saline soils for different climatic conditions and different soil water availabilities.

Shifts and disruptions in resource-use trait syndromes during the evolution of herbaceous crops.

PubMed

Milla, Rubén; Morente-López, Javier; Alonso-Rodrigo, J Miguel; Martín-Robles, Nieves; Chapin, F Stuart

2014-10-22

Trait-based ecology predicts that evolution in high-resource agricultural environments should select for suites of traits that enable fast resource acquisition and rapid canopy closure. However, crop breeding targets specific agronomic attributes rather than broad trait syndromes. Breeding for specific traits, together with evolution in high-resource environments, might lead to reduced phenotypic integration, according to predictions from the ecological literature. We provide the first comprehensive test of these hypotheses, based on a trait-screening programme of 30 herbaceous crops and their wild progenitors. During crop evolution plants became larger, which enabled them to compete more effectively for light, but they had poorly integrated phenotypes. In a subset of six herbaceous crop species investigated in greater depth, competitiveness for light increased during early plant domestication, whereas diminished phenotypic integration occurred later during crop improvement. Mass-specific leaf and root traits relevant to resource-use strategies (e.g. specific leaf area or tissue density of fine roots) changed during crop evolution, but in diverse and contrasting directions and magnitudes, depending on the crop species. Reductions in phenotypic integration and overinvestment in traits involved in competition for light may affect the chances of upgrading modern herbaceous crops to face current climatic and food security challenges. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Comparative transcriptome profiling of potassium starvation responsiveness in two contrasting watermelon genotypes.

PubMed

Fan, Molin; Huang, Yuan; Zhong, Yaqin; Kong, Qiusheng; Xie, Junjun; Niu, Mengliang; Xu, Yong; Bie, Zhilong

2014-02-01

Potassium (K) is one of the essential nutrients for crops, and K⁺ deficiency highly restricts crop yield and quality. Watermelon [Citrullus lanatus (Thunb.) Matsum. & Nakai] is an economically important crop that often suffers from K⁺ deficiency. To elucidate the underlying tolerance mechanism of watermelon to K⁺ deficiency and to improve K efficiency of watermelon and other crops in the future, two watermelon genotypes, namely, YS and 8424, that exhibit contrasting K efficiencies were studied to compare their response mechanisms to K⁺ deficiency. YS was more tolerant of K⁺ deficiency and displayed less inhibited root growth than 8424. Roots of YS and 8424 seedlings with or without K⁺ supply were harvested at 6 and 120 h after treatment (HAT), and their transcriptomes were analyzed by Illumina RNA sequencing. Different regulation mechanisms of the root K⁺-uptake genes for short- and long-term stress were observed. Genes involved in jasmonic acid and reactive oxygen species production; Ca²⁺ and receptor-like kinase signaling; lignin biosynthesis; and other stress-related genes were repressed in YS, whereas a large number of such stress-related genes were induced in 8424 at 120 HAT. These results suggested that repressed defense and stress response can save energy for better root growth in YS, which can facilitate K⁺ uptake and increase K efficiency and tolerance to K⁺ deficiency. This study presents the first global root transcriptome in watermelon and provides new insights into the molecular mechanisms underlying tolerance to K⁺ deficiency of K-efficient watermelon genotypes.

Breeding crop plants with deep roots: their role in sustainable carbon, nutrient and water sequestration

PubMed Central

Kell, Douglas B.

2011-01-01

Background The soil represents a reservoir that contains at least twice as much carbon as does the atmosphere, yet (apart from ‘root crops’) mainly just the above-ground plant biomass is harvested in agriculture, and plant photosynthesis represents the effective origin of the overwhelming bulk of soil carbon. However, present estimates of the carbon sequestration potential of soils are based more on what is happening now than what might be changed by active agricultural intervention, and tend to concentrate only on the first metre of soil depth. Scope Breeding crop plants with deeper and bushy root ecosystems could simultaneously improve both the soil structure and its steady-state carbon, water and nutrient retention, as well as sustainable plant yields. The carbon that can be sequestered in the steady state by increasing the rooting depths of crop plants and grasses from, say, 1 m to 2 m depends significantly on its lifetime(s) in different molecular forms in the soil, but calculations (http://dbkgroup.org/carbonsequestration/rootsystem.html) suggest that this breeding strategy could have a hugely beneficial effect in stabilizing atmospheric CO2. This sets an important research agenda, and the breeding of plants with improved and deep rooting habits and architectures is a goal well worth pursuing. PMID:21813565

Tests for Transmission of Prunus Necrotic Ringspot and Two Nepoviruses by Criconemella xenoplax

PubMed Central

Yuan, W-Q.; Barnett, O. W.; Westcott, S. W.; Scott, S. W.

1990-01-01

In two of three trials, detectable color reactions in ELISA for Prunus necrotic ringspot virus (PNRSV) were observed for Criconemella xenoplax handpicked from the root zone of infected peach trees. Criconemella xenoplax (500/pot) handpicked from root zones of peach trees infected with PNRSV failed to transmit the virus to cucumber or peach seedlings. The nematode also failed to transmit tomato ringspot (TomRSV) or tobacco ringspot viruses between cucumbers, although Xiphinema americanum transmitted TomRSV under the same conditions. Plants of peach, cucumber, Chenopodium quinoa, and Catharanthus roseus were not infected by PNRSV when grown in soil containing C. xenoplax collected from root zones of PNRSV-infected trees. Shirofugen cherry scions budded on Mazzard cherry seedling rootstocks remained symptomless when transplanted into root zones of PNRSV-infected trees. Virus transmission was not detected by ELISA when C. xenoplax individuals were observed to feed on cucumber root explants that were infected with PNRSV and subsequently fed on roots of Prunus besseyi in agar cultures. Even if virus transmission by C. xenoplax occurs via contamination rather than by a specific mechanism, it must be rare. PMID:19287748

Tests for Transmission of Prunus Necrotic Ringspot and Two Nepoviruses by Criconemella xenoplax.

PubMed

Yuan, W Q; Barnett, O W; Westcott, S W; Scott, S W

1990-10-01

In two of three trials, detectable color reactions in ELISA for Prunus necrotic ringspot virus (PNRSV) were observed for Criconemella xenoplax handpicked from the root zone of infected peach trees. Criconemella xenoplax (500/pot) handpicked from root zones of peach trees infected with PNRSV failed to transmit the virus to cucumber or peach seedlings. The nematode also failed to transmit tomato ringspot (TomRSV) or tobacco ringspot viruses between cucumbers, although Xiphinema americanum transmitted TomRSV under the same conditions. Plants of peach, cucumber, Chenopodium quinoa, and Catharanthus roseus were not infected by PNRSV when grown in soil containing C. xenoplax collected from root zones of PNRSV-infected trees. Shirofugen cherry scions budded on Mazzard cherry seedling rootstocks remained symptomless when transplanted into root zones of PNRSV-infected trees. Virus transmission was not detected by ELISA when C. xenoplax individuals were observed to feed on cucumber root explants that were infected with PNRSV and subsequently fed on roots of Prunus besseyi in agar cultures. Even if virus transmission by C. xenoplax occurs via contamination rather than by a specific mechanism, it must be rare.

Multi-frequency electrical impedance tomography as a non-invasive tool to characterize and monitor crop root systems

NASA Astrophysics Data System (ADS)

Weigand, Maximilian; Kemna, Andreas

2017-02-01

A better understanding of root-soil interactions and associated processes is essential in achieving progress in crop breeding and management, prompting the need for high-resolution and non-destructive characterization methods. To date, such methods are still lacking or restricted by technical constraints, in particular the charactization and monitoring of root growth and function in the field. A promising technique in this respect is electrical impedance tomography (EIT), which utilizes low-frequency (< 1 kHz)- electrical conduction- and polarization properties in an imaging framework. It is well established that cells and cell clusters exhibit an electrical polarization response in alternating electric-current fields due to electrical double layers which form at cell membranes. This double layer is directly related to the electrical surface properties of the membrane, which in turn are influenced by nutrient dynamics (fluxes and concentrations on both sides of the membranes). Therefore, it can be assumed that the electrical polarization properties of roots are inherently related to ion uptake and translocation processes in the root systems. We hereby propose broadband (mHz to hundreds of Hz) multi-frequency EIT as a non-invasive methodological approach for the monitoring and physiological, i.e., functional, characterization of crop root systems. The approach combines the spatial-resolution capability of an imaging method with the diagnostic potential of electrical-impedance spectroscopy. The capability of multi-frequency EIT to characterize and monitor crop root systems was investigated in a rhizotron laboratory experiment, in which the root system of oilseed plants was monitored in a water-filled rhizotron, that is, in a nutrient-deprived environment. We found a low-frequency polarization response of the root system, which enabled the successful delineation of its spatial extension. The magnitude of the overall polarization response decreased along with the physiological decay of the root system due to the stress situation. Spectral polarization parameters, as derived from a pixel-based Debye decomposition analysis of the multi-frequency imaging results, reveal systematic changes in the spatial and spectral electrical response of the root system. In particular, quantified mean relaxation times (of the order of 10 ms) indicate changes in the length scales on which the polarization processes took place in the root system, as a response to the prolonged induced stress situation. Our results demonstrate that broadband EIT is a capable, non-invasive method to image root system extension as well as to monitor changes associated with the root physiological processes. Given its applicability on both laboratory and field scales, our results suggest an enormous potential of the method for the structural and functional imaging of root systems for various applications. This particularly holds for the field scale, where corresponding methods are highly desired but to date are lacking.

Interference of allelopathic rice with paddy weeds at the root level.

PubMed

Yang, X-F; Kong, C-H

2017-07-01

Despite increasing knowledge of the involvement of allelopathy in negative interactions among plants, relatively little is known about its action at the root level. This study aims to enhance understanding of interactions of roots between a crop and associated weeds via allelopathy. Based on a series of experiments with window rhizoboxes and root segregation methods, we examined root placement patterns and root interactions between allelopathic rice and major paddy weeds Cyperus difformis, Echinochloa crus-galli, Eclipta prostrata, Leptochloa chinensis and Oryza sativa (weedy rice). Allelopathic rice inhibited growth of paddy weed roots more than shoots regardless of species. Furthermore, allelopathic rice significantly reduced total root length, total root area, maximum root width and maximum root depth of paddy weeds, while the weeds adjusted horizontal and vertical placement of their roots in response to the presence of allelopathic rice. With the exception of O. sativa (weedy rice), root growth of weeds avoided expanding towards allelopathic rice. Compared with root contact, root segregation significantly increased inhibition of E. crus-galli, E. prostrata and L. chinensis through an increase in rice allelochemicals. In particular, their root exudates induced production of rice allelochemicals. However, similar results were not observed in C. difformis and O. sativa (weedy rice) with either root segregation or root exudate application. The results demonstrate that allelopathic rice interferes with paddy weeds by altering root placement patterns and root interactions. This is the first case of a root behavioural strategy in crop-weed allelopathic interaction. © 2017 German Botanical Society and The Royal Botanical Society of the Netherlands.

Evidence of root zone hypoxia in Brassica rapa L. grown in microgravity.

PubMed

Stout, S C; Porterfield, D M; Briarty, L G; Kuang, A; Musgrave, M E

2001-03-01

A series of experiments was conducted aboard the U.S. space shuttle and the Mir space station to evaluate microgravity-induced root zone hypoxia in rapid-cycling Brassica (Brassica rapa L.), using both root and foliar indicators of low-oxygen stress to the root zone. Root systems from two groups of plants 15 and 30 d after planting, grown in a phenolic foam nutrient delivery system on the shuttle (STS-87), were harvested and fixed for microscopy or frozen for enzyme assays immediately postflight or following a ground-based control. Activities of fermentative enzymes were measured as indicators of root zone hypoxia and metabolism. Following 16 d of microgravity, ADH (alcohol dehydrogenase) activity was increased in the spaceflight roots 47% and 475% in the 15-d-old and 30-d-old plants, respectively, relative to the ground control. Cytochemical localization showed ADH activity in only the root tips of the space-grown plants. Shoots from plants that were grown from seed in flight in a particulate medium on the Mir station were harvested at 13 d after planting and quick-frozen and stored in flight in a gaseous nitrogen freezer or chemically fixed in flight for subsequent microscopy. When compared to material from a high-fidelity ground control, concentrations of shoot sucrose and total soluble carbohydrate were significantly greater in the spaceflight treatment according to enzymatic carbohydrate analysis. Stereological analysis of micrographs of sections from leaf and cotyledon tissue fixed in flight and compared with ground controls indicated no changes in the volume of protoplast, cell wall, and intercellular space in parenchyma cells. Within the protoplasm, the volume occupied by starch was threefold higher in the spaceflight than in the ground control, with a concomitant decrease in vacuolar volume in the spaceflight treatment. Both induction of fermentative enzyme activity in roots and accumulation of carbohydrates in foliage have been repeatedly shown to occur in response to root zone oxygen deprivation. These results indicate that root zone hypoxia is a persistent challenge in spaceflight plant growth experiments and may be caused by microgravity-induced changes in fluid and gas distribution.

Evidence of root zone hypoxia in Brassica rapa L. grown in microgravity

NASA Technical Reports Server (NTRS)

Stout, S. C.; Porterfield, D. M.; Briarty, L. G.; Kuang, A.; Musgrave, M. E.

2001-01-01

A series of experiments was conducted aboard the U.S. space shuttle and the Mir space station to evaluate microgravity-induced root zone hypoxia in rapid-cycling Brassica (Brassica rapa L.), using both root and foliar indicators of low-oxygen stress to the root zone. Root systems from two groups of plants 15 and 30 d after planting, grown in a phenolic foam nutrient delivery system on the shuttle (STS-87), were harvested and fixed for microscopy or frozen for enzyme assays immediately postflight or following a ground-based control. Activities of fermentative enzymes were measured as indicators of root zone hypoxia and metabolism. Following 16 d of microgravity, ADH (alcohol dehydrogenase) activity was increased in the spaceflight roots 47% and 475% in the 15-d-old and 30-d-old plants, respectively, relative to the ground control. Cytochemical localization showed ADH activity in only the root tips of the space-grown plants. Shoots from plants that were grown from seed in flight in a particulate medium on the Mir station were harvested at 13 d after planting and quick-frozen and stored in flight in a gaseous nitrogen freezer or chemically fixed in flight for subsequent microscopy. When compared to material from a high-fidelity ground control, concentrations of shoot sucrose and total soluble carbohydrate were significantly greater in the spaceflight treatment according to enzymatic carbohydrate analysis. Stereological analysis of micrographs of sections from leaf and cotyledon tissue fixed in flight and compared with ground controls indicated no changes in the volume of protoplast, cell wall, and intercellular space in parenchyma cells. Within the protoplasm, the volume occupied by starch was threefold higher in the spaceflight than in the ground control, with a concomitant decrease in vacuolar volume in the spaceflight treatment. Both induction of fermentative enzyme activity in roots and accumulation of carbohydrates in foliage have been repeatedly shown to occur in response to root zone oxygen deprivation. These results indicate that root zone hypoxia is a persistent challenge in spaceflight plant growth experiments and may be caused by microgravity-induced changes in fluid and gas distribution.

Labelling plants the Chernobyl way: A new approach for mapping rhizodeposition and biopore reuse

NASA Astrophysics Data System (ADS)

Banfield, Callum; Kuzyakov, Yakov

2016-04-01

A novel approach for mapping root distribution and rhizodeposition using 137Cs and 14C was applied. By immersing cut leaves into vials containing 137CsCl solution, the 137Cs label is taken up and partly released into the rhizosphere, where it strongly binds to soil particles, thus labelling the distribution of root channels in the long term. Reuse of root channels in crop rotations can be determined by labelling the first crop with 137Cs and the following crop with 14C. Imaging of the β- radiation with strongly differing energies differentiates active roots growing in existing root channels (14C + 137Cs activity) from roots growing in bulk soil (14C activity only). The feasibility of the approach was shown in a pot experiment with ten plants of two species, Cichorium intybus L., and Medicago sativa L. The same plants were each labelled with 100 kBq of 137CsCl and after one week with 500 kBq of 14CO2. 96 h later pots were cut horizontally at 6 cm depth. After the first 137Cs + 14C imaging of the cut surface, imaging was repeated with three layers of plastic film between the cut surface and the plate for complete shielding of 14C β- radiation to the background level, producing an image of the 137Cs distribution. Subtracting the second image from the first gave the 14C image. Both species allocated 18 - 22% of the 137Cs and about 30 - 40% of 14C activity below ground. Intensities far above the detection limit suggest that this approach is applicable to map the root system by 137Cs and to obtain root size distributions through image processing. The rhizosphere boundary was defined by the point at which rhizodeposited 14C activity declined to 5% of the activity of the root centre. Medicago showed 25% smaller rhizosphere extension than Cichorium, demonstrating that plant-specific rhizodeposition patterns can be distinguished. Our new approach is appropriate to visualise processes and hotspots on multiple scales: Heterogeneous rhizodeposition, as well as size and counts of roots and biopores formed by these in various soil depths can be determined. Finally, biopore reuse in crop rotations can be visualised.

Growth Chambers on the International Space Station for Large Plants

NASA Technical Reports Server (NTRS)

Massa, Gioia D.; Wheeler, Raymond M.; Morrow, Robert C.; Levine, Howard G.

2016-01-01

The International Space Station (ISS) now has platforms for conducting research on horticultural plant species under LED (Light Emitting Diodes) lighting, and those capabilities continue to expand. The Veggie vegetable production system was deployed to the ISS as an applied research platform for food production in space. Veggie is capable of growing a wide array of horticultural crops. It was designed for low power usage, low launch mass and stowage volume, and minimal crew time requirements. The Veggie flight hardware consists of a light cap containing red (630 nanometers), blue, (455 nanometers) and green (530 nanometers) LEDs. Interfacing with the light cap is an extendable bellowsbaseplate for enclosing the plant canopy. A second large plant growth chamber, the Advanced Plant Habitat (APH), is will fly to the ISS in 2017. APH will be a fully controllable environment for high-quality plant physiological research. APH will control light (quality, level, and timing), temperature, CO2, relative humidity, and irrigation, while scrubbing any cabin or plant-derived ethylene and other volatile organic compounds. Additional capabilities include sensing of leaf temperature and root zone moisture, root zone temperature, and oxygen concentration. The light cap will have red (630 nm), blue (450 nm), green (525 nm), far red (730 nm) and broad spectrum white LEDs (4100K). There will be several internal cameras (visible and IR) to monitor and record plant growth and operations. Veggie and APH are available for research proposals.

Corn stover harvest increases herbicide movement to subsurface drains - Root Zone Water Quality Model simulations.

PubMed

Shipitalo, Martin J; Malone, Robert W; Ma, Liwang; Nolan, Bernard T; Kanwar, Rameshwar S; Shaner, Dale L; Pederson, Carl H

2016-06-01

Crop residue removal for bioenergy production can alter soil hydrologic properties and the movement of agrochemicals to subsurface drains. The Root Zone Water Quality Model (RZWQM), previously calibrated using measured flow and atrazine concentrations in drainage from a 0.4 ha chisel-tilled plot, was used to investigate effects of 50 and 100% corn (Zea mays L.) stover harvest and the accompanying reductions in soil crust hydraulic conductivity and total macroporosity on transport of atrazine, metolachlor and metolachlor oxanilic acid (OXA). The model accurately simulated field-measured metolachlor transport in drainage. A 3 year simulation indicated that 50% residue removal reduced subsurface drainage by 31% and increased atrazine and metolachlor transport in drainage 4-5-fold when surface crust conductivity and macroporosity were reduced by 25%. Based on its measured sorption coefficient, approximately twofold reductions in OXA losses were simulated with residue removal. The RZWQM indicated that, if corn stover harvest reduces crust conductivity and soil macroporosity, losses of atrazine and metolachlor in subsurface drainage will increase owing to reduced sorption related to more water moving through fewer macropores. Losses of the metolachlor degradation product OXA will decrease as a result of the more rapid movement of the parent compound into the soil. Published 2015. This article is a U.S. Government work and is in the public domain in the USA. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

A porous stainless steel membrane system for extraterrestrial crop production

NASA Technical Reports Server (NTRS)

Koontz, H. V.; Prince, R. P.; Berry, W. L.; Knott, W. M. (Principal Investigator)

1990-01-01

A system was developed in which nutrient flow to plant roots is controlled by a thin (0.98 or 1.18 mm) porous (0.2 or 0.5 microns) stainless steel sheet membrane. The flow of nutrient solution through the membrane is controlled by adjusting the relative negative pressure on the nutrient solution side of the membrane. Thus, the nutrient solution is contained by the membrane and cannot escape from the compartment even under microgravity conditions if the appropriate pressure gradient across the membrane is maintained. Plant roots grow directly on the top surface of the membrane and pull the nutrient solution through this membrane interface. The volume of nutrient solution required by this system for plant growth is relatively small, since the plenum, which contains the nutrient solution in contact with the membrane, needs only to be of sufficient size to provide for uniform flow to all parts of the membrane. Solution not passing through the membrane to the root zone is recirculated through a reservoir where pH and nutrient levels are controlled. The size of the solution reservoir depends on the sophistication of the replenishment system. The roots on the surface of the membrane are covered with a polyethylene film (white on top, black on bottom) to maintain a high relative humidity and also limit light to prevent algal growth. Seeds are sown directly on the stainless steel membrane under the holes in the polyethylene film that allow a pathway for the shoots.

Impact of catch crop mixtures and soils on microbial diversity and nitrogen cycling communities in agroecosystems

NASA Astrophysics Data System (ADS)

Burbano, Claudia S.; Große, Julia; Hurek, Thomas; Reinhold-Hurek, Barbara

2017-04-01

In light of the projected world's population growth, food supplies will necessary have to increase. Soils are an essential component for achieving this expansion and its quality and fertility are crucial for bio-economic productivity. Catch crops can be an option to preserve or even improve soil productivity because of their effect on soil fertility and health. A long-term field experiment of the CATCHY project (Catch-cropping as an agrarian tool for continuing soil health and yield-increase) with two contrasting crop rotations was established in two different locations in Northern and Southern Germany. Single catch crops (white mustard, Egyptian clover, phacelia and bristle oat), catch crop mixtures (a mixture of the above and a commercial mixture) and main crops (wheat and maize) have been grown. To investigate how catch crops can affect the microbial diversity and particularly the microbial nitrogen cycling communities, we are studying first the short-term effect of different catch crop mixtures on the microbiomes associated with soils and roots. We compared these microbiomes with wheat plants, representing the microbial community before a catch crop treatment. Roots, rhizosphere and bulk soils were collected from representative samples of wheat plants from one field. The same compartments were also sampled from one fallow treatment and three catch crops variants from three fields each. The variants consisted of white mustard and the two catch crop mixtures. All fields were sampled by triplicate. Quantitative analyses were carried out by qPCR based on key functional marker genes for mineralization (ureC), nitrification (amoA), dissimilatory nitrate and nitrite reduction to ammonium -DNRA- (nrfA), denitrification (nirK, nirS, nosZ), and nitrogen fixation (nifH). These genes were targeted at the DNA and RNA level for the characterization of the microbial population and the actual transcription activity, respectively. We detected the presence and activity of microbial populations capable of performing all the main processes of the N-cycle except DNRA. In bulk soils the expression levels of genes for nitrification and denitrification were significantly higher in Northern than in Southern Germany. In contrast, the expression level of amoA genes in the rhizosphere were significantly higher in Southern than in Northern Germany, suggesting that amoA genes may be controlled by the plant and that this control is dependent on location as well. The microbial population structure was studied using rRNA and nifH amplicon sequencing of DNA extracts obtained from root, rhizosphere and bulk soils of wheat plants and catch crops. DNAs were sequenced using the Illumina platform (MiSeq platform). The OTU-based analysis showed that microbiomes from the three compartments studied were distinct in both locations. Additionally, the taxonomic-based analysis revealed also how plant roots selected for particular bacteria and excluded others. For example, wheat selected for β-Proteobacteria making up 35% of the bacterial community in roots but only 10% in bulk soil. These preliminary results indicate that location and catch crop treatments may have large effects on composition and activity of microbial communities and may be suitable to identify microbial functions which help to maintain or improve soil fertility and plant yield.

Breakdown of middle lamella pectin by (●) OH during rapid abscission in Azolla.

PubMed

Yamada, Yoshiya; Koibuchi, Mizuki; Miyamoto, Kensuke; Ueda, Junichi; Uheda, Eiji

2015-08-01

Azolla, a small water fern, abscises its roots and branches within 30 min upon treatment with various stresses. This study was conducted to test whether, in the rapid abscission that occurs in Azolla, breakdown of wall components of abscission zone cells by (●) OH is involved. Experimentally generated (●) OH caused the rapid separation of abscission zone cells from detached roots and the rapid shedding of roots from whole plants. Electron microscopic observations revealed that (●) OH rapidly and selectively dissolved a well-developed middle lamella between abscission zone cells and resultantly caused rapid cell separation and shedding. Treatment of abscission zones of Impatiens leaf petiole with (●) OH also accelerated the separation of abscission zone cells. However, compared with that of Azolla roots, accelerative effects in Impatiens were weak. A large amount of (●) OH was cytochemically detected in abscission zone cells both of Azolla roots and of Impatiens leaf petioles. These results suggest that (●) OH is involved in the cell separation process not only in the rapid abscission in Azolla but also in the abscission of Impatiens. However, for rapid abscission to occur, a well-developed middle lamella, a unique structure, which is sensitive to the attack of (●) OH, might be needed. © 2015 John Wiley & Sons Ltd.

Roots of symptom-free leguminous cover crop and living mulch species harbor diverse Fusarium communities that show highly variable aggressiveness on pea (Pisum sativum)

PubMed Central

Baćanović-Šišić, Jelena; Karlovsky, Petr; Wittwer, Raphaël; Walder, Florian; Campiglia, Enio; Radicetti, Emanuele; Friberg, Hanna; Baresel, Jörg Peter; Finckh, Maria R.

2018-01-01

Leguminous cover crop and living mulch species show not only great potential for providing multiple beneficial services to agro-ecosystems, but may also present pathological risks for other crops in rotations through shared pathogens, especially those of the genus Fusarium. Disease severity on roots of subterranean clover, white clover, winter and summer vetch grown as cover crop and living mulch species across five European sites as well as the frequency, distribution and aggressiveness to pea of Fusarium spp. recovered from the roots were assessed in 2013 and 2014. Disease symptoms were very low at all sites. Nevertheless, out of 1480 asymptomatic roots, 670 isolates of 14 Fusarium spp. were recovered. The most frequently isolated species in both years from all hosts were F. oxysporum and F. avenaceum accounting for 69% of total isolation percentage. They were common at the Swiss, Italian and German sites, whereas at the Swedish site F. oxysporum dominated and F. avenaceum occurred only rarely. The agressiveness and effect on pea biomass were tested in greenhouse assays for 72 isolates of six Fusarium species. Isolates of F. avenaceum caused severe root rot symptoms with mean severity index (DI) of 82 and 74% mean biomass reduction compared to the non-inoculated control. Fusarium oxysporum and F. solani isolates were higly variable in agressiveness and their impact on pea biomass. DI varied between 15 and 50 and biomass changes relative to the non-inoculated control -40% to +10%. Isolates of F. tricinctum, F. acuminatum and F. equiseti were non to weakly agressive often enhancing pea biomass. This study shows that some of the major pea pathogens are characterized by high ecological plasticity and have the ability to endophytically colonize the hosts studied that thus may serve as inoculum reservoir for susceptible main legume grain crops such as pea. PMID:29444142

Use-Exposure Relationships of Pesticides for Aquatic Risk Assessment

PubMed Central

Luo, Yuzhou; Spurlock, Frank; Deng, Xin; Gill, Sheryl; Goh, Kean

2011-01-01

Field-scale environmental models have been widely used in aquatic exposure assessments of pesticides. Those models usually require a large set of input parameters and separate simulations for each pesticide in evaluation. In this study, a simple use-exposure relationship is developed based on regression analysis of stochastic simulation results generated from the Pesticide Root-Zone Model (PRZM). The developed mathematical relationship estimates edge-of-field peak concentrations of pesticides from aerobic soil metabolism half-life (AERO), organic carbon-normalized soil sorption coefficient (KOC), and application rate (RATE). In a case study of California crop scenarios, the relationships explained 90–95% of the variances in the peak concentrations of dissolved pesticides as predicted by PRZM simulations for a 30-year period. KOC was identified as the governing parameter in determining the relative magnitudes of pesticide exposures in a given crop scenario. The results of model application also indicated that the effects of chemical fate processes such as partitioning and degradation on pesticide exposure were similar among crop scenarios, while the cross-scenario variations were mainly associated with the landscape characteristics, such as organic carbon contents and curve numbers. With a minimum set of input data, the use-exposure relationships proposed in this study could be used in screening procedures for potential water quality impacts from the off-site movement of pesticides. PMID:21483772

Effects of cover crops with potential for use in anaerobic soil disinfestation (asd) on reproduction of meloidogyne spp.

USDA-ARS?s Scientific Manuscript database

Several cover crops were assessed for their susceptibility to invasion and galling by three species of root-knot nematode, Meloidogyne arenaria, M. incognita, and M. javanica. Crops were selected based on their potential for use as the organic amendment component in anaerobic soil disinfestation (AS...

Effect of UV-B light on total soluble phenolic contents of various whole and fresh-cut specialty crops

USDA-ARS?s Scientific Manuscript database

BACKGROUND: The effect of ultraviolet-B (UV-B) light treatment on total soluble phenolic contents (TSP) of various whole and fresh-cut specialty crops was evaluated. Whole fruits (strawberries, blueberries, grapes), vegetables (cherry tomatoes, white sweet corn) and root crops (sweet potatoes, colo...

Selection of root-zone media for higher plant cultivation in space.

PubMed

Guo, Shuang-sheng; Ai, Wei-dang; Zhao, Cheng-jian; Han, Li-jun; Wang, Jian-xiao

2004-04-01

To investigate the cultivating effects of several mineral matters used as root-zone media for higher plant growth in space. Four kinds of artificial and natural mineral matters were used as plant root-zone media based on lots of investigation and analysis. Nutrient liquid was delivered into the media by a long capillary material, and roots of plants obtained nutrition and water from the media. The related parameters such as plant height and photosynthetic efficiency were measured and analyzed. The growing effect in a mixture of coarse and fine ceramic particles with equal quantity proportion was the best, that in fine ceramic particles was the second best, that in clinoptilolite particles was the third and that in diorite particles was the last. The mixture of coarse and fine ceramic particles with equal quantity possesses not only fine capillary action, but also good aerating ability, and therefore is capable of being utilized as an effective root-zone media for higher plants intended to be grown in space.

Analysis of the community compositions of rhizosphere fungi in soybeans continuous cropping fields.

PubMed

Bai, Li; Cui, Jiaqi; Jie, Weiguang; Cai, Baiyan

2015-11-01

We used rhizosphere soil sampled from one field during zero year and two years of continuous cropping of high-protein soybean to analyze the taxonomic community compositions of fungi during periods of high-incidence of root rot. Our objectives were to identify the dominant pathogens in order to provide a theoretical basis for the study of pathogenesis as well as control tactics for soybean root rot induced by continuous cropping. A total of 17,801 modified internal transcribed spacer (ITS) sequences were obtained from three different soybean rhizosphere soil samples after zero year and 1 or 2 years of continuous cropping using 454 high-throughput sequencing. The dominant eumycote fungal were identified to be Ascomycota and Basidiomycota in the three soil samples. Continuous cropping of soybean affected the diversity of fungi in rhizosphere soils and increased the abundance of Thelebolus and Mortierellales significantly. Thanatephorus, Fusarium, and Alternaria were identified to be the dominant pathogenic fungal genera in rhizosphere soil from continuously cropped soybean fields. Copyright © 2015 Elsevier GmbH. All rights reserved.

Vadose zone microbiology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kieft, Thomas L.; Brockman, Fred J.

2001-01-17

The vadose zone is defined as the portion of the terrestrial subsurface that extends from the land surface downward to the water table. As such, it comprises the surface soil (the rooting zone), the underlying subsoil, and the capillary fringe that directly overlies the water table. The unsaturated zone between the rooting zone and the capillary fringe is termed the "intermediate zone" (Chapelle, 1993). The vadose zone has also been defined as the unsaturated zone, since the sediment pores and/or rock fractures are generally not completely water filled, but instead contain both water and air. The latter characteristic results inmore » the term "zone of aeration" to describe the vadose zone. The terms "vadose zone," "unsaturated zone", and "zone of aeration" are nearly synonymous, except that the vadose zone may contain regions of perched water that are actually saturated. The term "subsoil" has also been used for studies of shallow areas of the subsurface immediately below the rooting zone. This review focuses almost exclusively on the unsaturated region beneath the soil layer since there is already an extensive body of literature on surface soil microbial communities and process, e.g., Paul and Clark (1989), Metting (1993), Richter and Markowitz, (1995), and Sylvia et al. (1998); whereas the deeper strata of the unsaturated zone have only recently come under scrutiny for their microbiological properties.« less

Fagopyrum esculentum Alters Its Root Exudation after Amaranthus retroflexus Recognition and Suppresses Weed Growth

PubMed Central

Gfeller, Aurélie; Glauser, Gaétan; Etter, Clément; Signarbieux, Constant; Wirth, Judith

2018-01-01

Weed control by crops through growth suppressive root exudates is a promising alternative to herbicides. Buckwheat (Fagopyrum esculentum) is known for its weed suppression and redroot pigweed (Amaranthus retroflexus) control is probably partly due to allelopathic root exudates. This work studies whether other weeds are also suppressed by buckwheat and if the presence of weeds is necessary to induce growth repression. Buckwheat and different weeds were co-cultivated in soil, separating roots by a mesh allowing to study effects due to diffusion. Buckwheat suppressed growth of pigweed, goosefoot and barnyard grass by 53, 42, and 77% respectively without physical root interactions, probably through allelopathic compounds. Root exudates were obtained from sand cultures of buckwheat (BK), pigweed (P), and a buckwheat/pigweed mixed culture (BK-P). BK-P root exudates inhibited pigweed root growth by 49%. Characterization of root exudates by UHPLC-HRMS and principal component analysis revealed that BK and BK-P had a different metabolic profile suggesting that buckwheat changes its root exudation in the presence of pigweed indicating heterospecific recognition. Among the 15 different markers, which were more abundant in BK-P, tryptophan was identified and four others were tentatively identified. Our findings might contribute to the selection of crops with weed suppressive effects. PMID:29445385

Fagopyrum esculentum Alters Its Root Exudation after Amaranthus retroflexus Recognition and Suppresses Weed Growth.

PubMed

Gfeller, Aurélie; Glauser, Gaétan; Etter, Clément; Signarbieux, Constant; Wirth, Judith

2018-01-01

Weed control by crops through growth suppressive root exudates is a promising alternative to herbicides. Buckwheat ( Fagopyrum esculentum ) is known for its weed suppression and redroot pigweed ( Amaranthus retroflexus ) control is probably partly due to allelopathic root exudates. This work studies whether other weeds are also suppressed by buckwheat and if the presence of weeds is necessary to induce growth repression. Buckwheat and different weeds were co-cultivated in soil, separating roots by a mesh allowing to study effects due to diffusion. Buckwheat suppressed growth of pigweed, goosefoot and barnyard grass by 53, 42, and 77% respectively without physical root interactions, probably through allelopathic compounds. Root exudates were obtained from sand cultures of buckwheat (BK), pigweed (P), and a buckwheat/pigweed mixed culture (BK-P). BK-P root exudates inhibited pigweed root growth by 49%. Characterization of root exudates by UHPLC-HRMS and principal component analysis revealed that BK and BK-P had a different metabolic profile suggesting that buckwheat changes its root exudation in the presence of pigweed indicating heterospecific recognition. Among the 15 different markers, which were more abundant in BK-P, tryptophan was identified and four others were tentatively identified. Our findings might contribute to the selection of crops with weed suppressive effects.

Comparison of simulations of land-use specific water demand and irrigation water supply by MF-FMP and IWFM

USGS Publications Warehouse

Schmid, Wolfgang; Dogural, Emin; Hanson, Randall T.; Kadir, Tariq; Chung, Francis

2011-01-01

Two hydrologic models, MODFLOW with the Farm Process (MF-FMP) and the Integrated Water Flow Model (IWFM), are compared with respect to each model’s capabilities of simulating land-use hydrologic processes, surface-water routing, and groundwater flow. Of major concern among the land-use processes was the consumption of water through evaporation and transpiration by plants. The comparison of MF-FMP and IWFM was conducted and completed using a realistic hypothetical case study. Both models simulate the water demand for water-accounting units resulting from evapotranspiration and inefficiency losses and, for irrigated units, the supply from surface-water deliveries and groundwater pumpage. The MF-FMP simulates reductions in evapotranspiration owing to anoxia and wilting, and separately considers land-use-related evaporation and transpiration; IWFM simulates reductions in evapotranspiration related to the depletion of soil moisture. The models simulate inefficiency losses from precipitation and irrigation water applications to runoff and deep percolation differently. MF-FMP calculates the crop irrigation requirement and total farm delivery requirement, and then subtracts inefficiency losses from runoff and deep percolation. In IWFM, inefficiency losses to surface runoff from irrigation and precipitation are computed and subtracted from the total irrigation and precipitation before the crop irrigation requirement is estimated. Inefficiency losses in terms of deep percolation are computed simultaneously with the crop irrigation requirement. The seepage from streamflow routing also is computed differently and can affect certain hydrologic settings and magnitudes ofstreamflow infiltration. MF-FMP assumes steady-state conditions in the root zone; therefore, changes in soil moisture within the root zone are not calculated. IWFM simulates changes in the root zone in both irrigated and non-irrigated natural vegetation. Changes in soil moisture are more significant for non-irrigated natural vegetation areas than in the irrigated areas. Therefore, to facilitate the comparison of models, the changes in soil moisture are only simulated by IWFM for the natural vegetation areas, and soil-moisture parameters in irrigated regions in IWFM were specified at constant values . The IWFM total simulated changes in soil moisture that are related to natural vegetation areas vary from stress period to stress period but are small over the entire two-year period of simulation. In the hypothetical case study, IWFM simulates more evapotranspiration and return flows and less streamflow infiltration than MF-FMP. This causes more simulated surface-water diversions upstream and less simulated water available to downstream farms in IWFM compared to MF-FMP. The evapotranspiration simulated by the two models is well correlated even though the quantity is different. The different approaches used to simulate soil moisture, evapotranspiration, and inefficient losses yield different results for deep percolation and pumpage. In IWFM, deep percolation is a function of soil moisture; therefore, the constant soil-moisture requirement for irrigated regions, assumed for this comparison, results in a constant deep percolation rate. This led to poor correlation with the variable deep percolation rates simulated in MF-FMP, where the deep percolation rate, a fraction of inefficiency losses from precipitation and irrigation, is a function of quasi-steady state infiltration for each soil type and a function of groundwater head. Similarly, the larger simulated evapotranspiration in IWFM is mainly responsible for larger simulated groundwater pumpage demands and related lower groundwater levels in IWFM compared to MF-FMP. Because of the differences in features between MF-FMP and IWFM, the user may find that for certain hydrologic settings one model is better suited than the other. The performance of MF-FMP and IWFM in this particular hypothetical test case, with a fixed framework composed of common initial and boundary conditions and input parameter values, does not necessarily predict the performance of MF-FMP and IWFM in a real-world situation with variable framework and parameter values. These differences may affect the evaluation of policies, projects, or water-balance analysis for some hydrologic settings. Generally, both models are powerful tools that simulate a connected system of aquifer, stream networks, land surface, root zone, and runoff processes. MF-FMP simulated the hypothetical test case in about 4 minutes compared to about 58 minutes for IWFM.

Modelling water uptake efficiency of root systems

NASA Astrophysics Data System (ADS)

Leitner, Daniel; Tron, Stefania; Schröder, Natalie; Bodner, Gernot; Javaux, Mathieu; Vanderborght, Jan; Vereecken, Harry; Schnepf, Andrea

2016-04-01

Water uptake is crucial for plant productivity. Trait based breeding for more water efficient crops will enable a sustainable agricultural management under specific pedoclimatic conditions, and can increase drought resistance of plants. Mathematical modelling can be used to find suitable root system traits for better water uptake efficiency defined as amount of water taken up per unit of root biomass. This approach requires large simulation times and large number of simulation runs, since we test different root systems under different pedoclimatic conditions. In this work, we model water movement by the 1-dimensional Richards equation with the soil hydraulic properties described according to the van Genuchten model. Climatic conditions serve as the upper boundary condition. The root system grows during the simulation period and water uptake is calculated via a sink term (after Tron et al. 2015). The goal of this work is to compare different free software tools based on different numerical schemes to solve the model. We compare implementations using DUMUX (based on finite volumes), Hydrus 1D (based on finite elements), and a Matlab implementation of Van Dam, J. C., & Feddes 2000 (based on finite differences). We analyse the methods for accuracy, speed and flexibility. Using this model case study, we can clearly show the impact of various root system traits on water uptake efficiency. Furthermore, we can quantify frequent simplifications that are introduced in the modelling step like considering a static root system instead of a growing one, or considering a sink term based on root density instead of considering the full root hydraulic model (Javaux et al. 2008). References Tron, S., Bodner, G., Laio, F., Ridolfi, L., & Leitner, D. (2015). Can diversity in root architecture explain plant water use efficiency? A modeling study. Ecological modelling, 312, 200-210. Van Dam, J. C., & Feddes, R. A. (2000). Numerical simulation of infiltration, evaporation and shallow groundwater levels with the Richards equation. Journal of Hydrology, 233(1), 72-85. Javaux, M., Schröder, T., Vanderborght, J., & Vereecken, H. (2008). Use of a three-dimensional detailed modeling approach for predicting root water uptake. Vadose Zone Journal, 7(3), 1079-1088.

Origin of the Words Denoting Some of the Most Ancient Old World Pulse Crops and Their Diversity in Modern European Languages

PubMed Central

Mikić, Aleksandar

2012-01-01

This preliminary research was aimed at finding the roots in various Eurasian proto-languages directly related to pulses and giving the words denoting the same in modern European languages. Six Proto-Indo-European roots were indentified, namely arnk(')- (‘a leguminous plant’), *bhabh- (‘field bean’), * (‘a kernel of leguminous plant’, ‘pea’), ghArs- (‘a leguminous plant’), *kek- (‘pea’) and *lent- (‘lentil’). No Proto-Uralic root was attested save hypothetically *kača (‘pea’), while there were two Proto-Altaic roots, *bŭkrV (‘pea’) and * (‘lentil’). The Proto-Caucasianx root * denoted pea, while another one, *hōwł(ā) (‘bean’, ‘lentil’) and the Proto-Basque root *iłha-r (‘pea’, ‘bean’, ‘vetch’) could have a common Proto-Sino-Caucasian ancestor, *hVwłV (‘bean’) within the hypothetic Dené-Caucasian language superfamily. The Modern Maltese preserved the memory of two Proto-Semitic roots, *'adaš- (‘lentil’) and *pūl- (‘field bean’). The presented results prove that the most ancient Eurasian pulse crops were well-known and extensively cultivated by the ancestors of all modern European nations. The attested lexicological continuum witnesses the existence of a millennia-long links between the peoples of Eurasia to their mutual benefit. This research is meant to encourage interdisciplinary concerted actions between plant scientists dealing with crop evolution and biodiversity, archaeobotanists and language historians. PMID:22973458

Irrigation Differentially Impacts Populations of Indigenous Antibiotic-Producing Pseudomonas spp. in the Rhizosphere of Wheat

PubMed Central

Mavrodi, Olga V.; Mavrodi, Dmitri V.; Parejko, James A.; Thomashow, Linda S.

2012-01-01

This work determined the impact of irrigation on the seasonal dynamics of populations of Pseudomonas spp. producing the antibiotics phenazine-1-carboxylic acid (Phz+) and 2,4-diacetylphloroglucinol (Phl+) in the rhizosphere of wheat grown in the low-precipitation zone (150 to 300 mm annually) of the Columbia Plateau of the Inland Pacific Northwest. Population sizes and plant colonization frequencies of Phz+ and Phl+ Pseudomonas spp. were determined in winter and spring wheat collected during the growing seasons from 2008 to 2009 from selected commercial dryland and irrigated fields in central Washington State. Only Phz+ bacteria were detected on dryland winter wheat, with populations ranging from 4.8 to 6.3 log CFU g−1 of root and rhizosphere colonization frequencies of 67 to 100%. The ranges of population densities of Phl+ and Phz+ Pseudomonas spp. recovered from wheat grown under irrigation were similar, but 58 to 100% of root systems were colonized by Phl+ bacteria whereas only 8 to 50% of plants harbored Phz+ bacteria. In addition, Phz+ Pseudomonas spp. were abundant in the rhizosphere of native plant species growing in nonirrigated areas adjacent to the sampled dryland wheat fields. This is the first report that documents the impact of irrigation on indigenous populations of two closely related groups of antibiotic-producing pseudomonads that coinhabit the rhizosphere of an economically important cereal crop. These results demonstrate how crop management practices can influence indigenous populations of antibiotic-producing pseudomonads with the capacity to suppress soilborne diseases of wheat. PMID:22389379

First report of the stubby root nematode Paratrichodorus allius on sugar beet in Minnesota

USDA-ARS?s Scientific Manuscript database

Stubby root nematodes (Paratrichodorus and Trichodorus) are migratory ectoparasites that feed on roots, transmit tobraviruses, and cause significant crop loss. In June 2015, three soil samples from a sugar beet field near Felton (Clay County), MN were submitted to the Nematology Laboratory at North ...

Sugar Beet, Energy Beet, and Industrial Beet

USDA-ARS?s Scientific Manuscript database

Sugar beet (Beta vulgaris) is a temperate root crop grown primarily as a source of sucrose for human diets. Breeding has focused on sucrose yield, which is simply the product of total root yield times the proportion of sucrose in the harvested roots, minus loss of sucrose in molasses due to impuriti...

Colonization of Clonostachys rosea on soybean root inoculated with Fusarium graminearum

USDA-ARS?s Scientific Manuscript database

Soybean root rot, caused by Fusarium graminearum, is a devastating disease. Clonostachys rosea has been reported to have protection against plant pathogens in different crops. The objectives of this study were to determine if a strain of C. rosea (ACM941) can colonize soybean root that were inocula...

Field and laboratory root growth and development of Lesquerella germplasm

USDA-ARS?s Scientific Manuscript database

Lesquerella roots have not been fully characterized as compared to other crop species. There is initial information gathered on root trait variation in young seedling grown in laboratory settings but studies to determine if the results can be extrapolated in field grown plants are lacking. We report...

Evaluation of Sentinel-2A satellite imagery for mapping cotton root rot

USDA-ARS?s Scientific Manuscript database

Cotton (Gossypium hirsutum L.) is an economically important crop that is highly susceptible to cotton root rot. Remote sensing technology provides a useful and effective means for detecting and mapping cotton root rot infestations in cotton fields. This research assessed the potential of 10-m Sentin...

Adventitious Root Formation of Forest Trees and Horticultural Plants - From Genes to Applications

USDA-ARS?s Scientific Manuscript database

Adventitious root formation is a key step in the clonal propagation of forest trees and horticultural crops. Difficulties in forming adventitious roots (ARs) on stem cuttings and plants produced in vitro hinders the propagation of elite trees and efficient production of many horticultural plant spec...

ELEVATED CO2 AND ELEVATED TEMPERATURE HAVE NO EFFECT ON DOUGLAS-FIR FINE-ROOT DYNAMICS IN NITROGEN-POOR SOIL

EPA Science Inventory

Here, we investigate fine-root production, mortality and standing crop of Douglas-fir (Pseudotsuga menziesii) seedlings exposed to elevated atmospheric CO2 and elevated air temperature. We hypothesized that these treatments would increase fine-root production, but that mortality ...

Biology, biological control and molecular genetics of root diseases of wheat and barley

USDA-ARS?s Scientific Manuscript database

Root diseases cause billions of dollars annually in losses to cereal growers. Resistance to foliar diseases is common, but resistance to root diseases is rare. Soilborne pathogens of cereals are managed through crop rotation, tillage, and chemical seed treatments. However, plants also defend themsel...

Storage root of cassava: Morphological types, anatomy, formation, growth, development and harvest time

USDA-ARS?s Scientific Manuscript database

Cassava (Manihot esculenta, Crantz) is considered a starchy root crop that provides staple food for millions of people in tropical and subtropical regions of the world. Research efforts are directed towards genetic breeding and cultivation of cassava to improve cassava storage root starch production...

BIOLOGY, BIOLOGICAL CONTROL AND MOLECULAR GENETICS OF ROOT DISEASES OF WHEAT AND BARLEY. BIOLOGY, BIOLOGICAL CONTROL AND MOLECULAR GENETICS OF ROOT DISEASES OF WHEAT AND BARLEY.

USDA-ARS?s Scientific Manuscript database

Root diseases cause billions of dollars annually in losses to cereal growers. Resistance to foliar diseases is common, but resistance to root diseases is rare. Soilborne pathogens of cereals are managed through crop rotation, tillage, and chemical seed treatments. However, plants also defend themsel...

[Research advances in mechanism of high phosphorus use efficiency of plants].

PubMed

Ma, Xiangqing; Liang, Xia

2004-04-01

Phosphorus deficiency is one of the main factors influencing agricultural and forestry productions. Fertilization and soil improvement are the major measures to meet the demand of phosphorus for crops in traditional agriculture and forestry management. Recently, the plants with high phosphorus use efficiency have been discovered to replace the traditional measures to improve phosphorus use efficiency of crops. This paper reviewed the research advances in the morphological, physiological and genetics mechanisms of plants with high phosphorus use efficiency. There were three mechanisms for the plants with high phosphorus use efficiency to grow under phosphorus stress: (1) under low phosphorus stress, the root morphology would change (root system grew fast, root axes became small, the number and density of lateral root increased) and more photosynthesis products would transport from the crown to the root, (2) under low phosphorus stress, plant root exudation increased, mycorrhizae invaded into root system, the feature of root absorption kinetics changed, and the internal phosphorus cycling of plant reinforced to tolerate phosphorus deficiency, and (3) under long selection stress of low phosphorus, some plants would form the genetic properties of phosphorus nutrition that could exploit the hardly soluble phosphorus in the soil.

Analysis of water application efficiency and emission uniformity of drip irrigation systems based on space-time analysis of soil moisture patterns in soils

NASA Astrophysics Data System (ADS)

Shabeeb, Ahmeed; Taha, Uday; dragonetti, giovanna; Lamaddalena, Nicola; Coppola, Antonio

2016-04-01

In order to evaluate how efficiently and uniformly drip irrigation systems can deliver water to emitters distributed around a field, we need some methods for measuring/calculating water application efficiency (WAE) and emission uniformity (EU). In general, the calculation of the WAE and of other efficiency indices requires the measurement of the water stored in the root zone. Measuring water storage in soils allows directly saying how much water a given location of the field retains having received a given amount of irrigation water. And yet, due to the difficulties of measuring water content variability under an irrigation system at field scale, it is quite common using EU as a proxy indicator of the irrigation performance. This implicitly means assuming that the uniformity of water application is immediately reflected in an uniformity of water stored in the root zone. In other words, that if a site receive more water it will store more water. Nevertheless, due to the heterogeneity of soil hydrological properties the same EU may correspond to very different distributions of water stored in the soil root zone. 1) In the case of isolated drippers, the storages measured in the soil root zone layer shortly after an irrigation event may be or not different from the water height applied at the surface depending on the vertical/horizontal development of the wetted bulbs. Specifically, in the case of dominant horizontal spreading the water storage is expected to reflect the distribution of water applied at the surface. To the contrary, in the case of relatively significant vertical spreading, deep percolation fluxes (fluxes leaving the root zone) may well induce water storages in the root zone significantly different from the water applied at the surface. 2) The drippers and laterals are close enough that the wetted bulbs below adjacent drippers may interact. In this case, lateral fluxes in the soil may well induce water storages in the root zone which may be significantly uncorrelated with the uniformity of the water applied at the surface. In both the cases, the size of lateral fluxes compared to the vertical ones throughout the rooting zone depends, besides the soil hydraulic properties, on the amount of water delivered to the soil. Larger water applications produce greater spreading, but in both the horizontal and vertical directions. Increased vertical spreading may be undesirable because water moving below the active root zone can result in wasted water, loss of nutrients, and groundwater pollution.

Comparison of Coconut Coir, Rockwool, and Peat Cultivations for Tomato Production: Nutrient Balance, Plant Growth and Fruit Quality.

PubMed

Xiong, Jing; Tian, Yongqiang; Wang, Jingguo; Liu, Wei; Chen, Qing

2017-01-01

Rockwool (RC) and peat are two common substrates used worldwide in horticultural crop production. In recent years environmental and ecological concerns raised the demand for reducing the use of RC and peat. Although coconut coir (CC) has been increasingly used as an alternative to RC and peat, it is still needed to comprehensively evaluate the feasibility of CC before widely used. To meet this need, CC, RC, and peat-vermiculite (PVC) cultivations were used as tomato cultivation substrates to evaluate their effects on EC, pH and mineral ions in root-zone solution and drainage, nutrient uptake by crops, nutrient balance of cultivation system, plant growth and fruit quality. In general, CC significantly increased K and S uptake by crops, photosynthesis, individual fruit weight and total fruit yield compared to RC, and increased P and K uptake by crops and total fruit yield compared to PVC. Moreover, CC significantly increased organic acid of fruit in first truss compared to both RC and PVC. The uncredited nutrient was overally lower under CC than under RC and PVC (the lower, the better). For all substrates, the blossom-end rot (BER) of fruit increased gradually from 3rd to 13th trusses. The BER of fruit was not significantly influenced by CC compared to RC or PVC, but was sginificantly decreased by PVC compared to RC. Our results infer that CC was a potential substrate that could be widely used in tomato production. However, the inhibition of BER was still a challenge when CC was used as cultivation substrate for tomato.

Comparison of Coconut Coir, Rockwool, and Peat Cultivations for Tomato Production: Nutrient Balance, Plant Growth and Fruit Quality

PubMed Central

Xiong, Jing; Tian, Yongqiang; Wang, Jingguo; Liu, Wei; Chen, Qing

2017-01-01

Rockwool (RC) and peat are two common substrates used worldwide in horticultural crop production. In recent years environmental and ecological concerns raised the demand for reducing the use of RC and peat. Although coconut coir (CC) has been increasingly used as an alternative to RC and peat, it is still needed to comprehensively evaluate the feasibility of CC before widely used. To meet this need, CC, RC, and peat-vermiculite (PVC) cultivations were used as tomato cultivation substrates to evaluate their effects on EC, pH and mineral ions in root-zone solution and drainage, nutrient uptake by crops, nutrient balance of cultivation system, plant growth and fruit quality. In general, CC significantly increased K and S uptake by crops, photosynthesis, individual fruit weight and total fruit yield compared to RC, and increased P and K uptake by crops and total fruit yield compared to PVC. Moreover, CC significantly increased organic acid of fruit in first truss compared to both RC and PVC. The uncredited nutrient was overally lower under CC than under RC and PVC (the lower, the better). For all substrates, the blossom-end rot (BER) of fruit increased gradually from 3rd to 13th trusses. The BER of fruit was not significantly influenced by CC compared to RC or PVC, but was sginificantly decreased by PVC compared to RC. Our results infer that CC was a potential substrate that could be widely used in tomato production. However, the inhibition of BER was still a challenge when CC was used as cultivation substrate for tomato. PMID:28824665

Nutrient leaching in a Colombian savanna Oxisol amended with biochar.

PubMed

Major, Julie; Rondon, Marco; Molina, Diego; Riha, Susan J; Lehmann, Johannes

2012-01-01

Nutrient leaching in highly weathered tropical soils often poses a challenge for crop production. We investigated the effects of applying 20 t ha biochar (BC) to a Colombian savanna Oxisol on soil hydrology and nutrient leaching in field experiments. Measurements were made over the third and fourth years after a single BC application. Nutrient contents in the soil solution were measured under one maize and one soybean crop each year that were routinely fertilized with mineral fertilizers. Leaching by unsaturated water flux was calculated using soil solution sampled with suction cup lysimeters and water flux estimates generated by the model HYDRUS 1-D. No significant difference ( > 0.05) was observed in surface-saturated hydraulic conductivity or soil water retention curves, resulting in no relevant changes in water percolation after BC additions in the studied soils. However, due to differences in soil solution concentrations, leaching of inorganic N, Ca, Mg, and K measured up to a depth of 0.6 m increased ( < 0.05), whereas P leaching decreased, and leaching of all nutrients (except P) at a depth of 1.2 m was significantly reduced with BC application. Changes in leaching at 2.0 m depth with BC additions were about one order of magnitude lower than at other depths, except for P. Biochar applications increased soil solution concentrations and downward movement of nutrients in the root zone and decreased leaching of Ca, Mg, and Sr at 1.2 m, possibly by a combination of retention and crop nutrient uptake. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Hydraulic Redistribution: A Modeling Perspective

NASA Astrophysics Data System (ADS)

Daly, E.; Verma, P.; Loheide, S. P., III

2014-12-01

Roots play a key role in the soil water balance. They extract and transport water for transpiration, which usually represents the most important soil water loss in vegetated areas, and can redistribute soil water, thereby increasing transpiration rates and enhancing root nutrient uptake. We present here a two-dimensional model capable of describing two key aspects of root water uptake: root water compensation and hydraulic redistribution. Root water compensation is the ability of root systems to respond to the reduction of water uptake from areas of the soil with low soil water potential by increasing the water uptake from the roots in soil parts with higher water potential. Hydraulic redistribution is a passive transfer of water through the root system from areas of the soil with greater water potential to areas with lower water potential. Both mechanisms are driven by gradients of water potential in the soil and the roots. The inclusion of root water compensation and hydraulic redistribution in models can be achieved by describing root water uptake as a function of the difference in water potential between soil and root xylem. We use a model comprising the Richards equation for the water flow in variably saturated soils and the Darcy's equation for the water flow in the xylem. The two equations are coupled via a sink term, which is assumed to be proportional to the difference between soil and xylem water potentials. The model is applied in two case studies to describe vertical and horizontal hydraulic redistribution and the interaction between vegetation with different root depths. In the case of horizontal redistribution, the model is used to reproduce the fluxes of water across the root system of a tree subjected to uneven irrigation. This example can be extended to situations when only part of the root system has access to water, such as vegetation near creeks, trees at the edge of forests, and street trees in urban areas. The second case is inspired by recent agro-ecosystems experiments that combined different vegetation species to increase crop yield. The presence of deep rooted plants (nursing species) near shallow rooted crops (nursed species) enhanced crop growth thanks to vertical and horizontal hydraulic redistribution. The model is able to reproduce the patterns of water redistribution observed in this scenario.

Impacts of domestication on the arbuscular mycorrhizal symbiosis of 27 crop species.

PubMed

Martín-Robles, Nieves; Lehmann, Anika; Seco, Erica; Aroca, Ricardo; Rillig, Matthias C; Milla, Rubén

2018-04-01

The arbuscular mycorrhizal (AM) symbiosis is key to plant nutrition, and hence is potentially key in sustainable agriculture. Fertilization and other agricultural practices reduce soil AM fungi and root colonization. Such conditions might promote the evolution of low mycorrhizal responsive crops. Therefore, we ask if and how evolution under domestication has altered AM symbioses of crops. We measured the effect of domestication on mycorrhizal responsiveness across 27 crop species and their wild progenitors. Additionally, in a subset of 14 crops, we tested if domestication effects differed under contrasting phosphorus (P) availabilities. The response of AM symbiosis to domestication varied with P availability. On average, wild progenitors benefited from the AM symbiosis irrespective of P availability, while domesticated crops only profited under P-limited conditions. Magnitudes and directions of response were diverse among the 27 crops, and were unrelated to phylogenetic affinities or to the coordinated evolution with fine root traits. Our results indicate disruptions in the efficiency of the AM symbiosis linked to domestication. Under high fertilization, domestication could have altered the regulation of resource trafficking between AM fungi and associated plant hosts. Provided that crops are commonly raised under high fertilization, this result has important implications for sustainable agriculture. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Gravity-induced changes in intracellular potentials in elongating cortical cells of mung bean roots

NASA Technical Reports Server (NTRS)

Ishikawa, H.; Evans, M. L.

1990-01-01

Gravity-induced changes in intracellular potentials in primary roots of 2-day-old mung bean (Vigna mungo L. cv. black matpe) seedlings were investigated using glass microelectrodes held by 3-dimensional hydraulic micro-drives. The electrodes were inserted into outer cortical cells within the elongation zone. Intracellular potentials, angle of root orientation with respect to gravity, and position within the root of the impaled cortical cell were measured simultaneously. Gravistimulation caused intracellular potential changes in cortical cells of the elongation zone. When the roots were oriented vertically, the intracellular potentials of the outer cortical cells (2 mm behind the root apex) were approximately - 115 mV. When the roots were placed horizontally cortical cells on the upper side hyperpolarized to - 154 mV within 30 s while cortical cells on the lower side depolarized to about - 62 mV. This electrical asymmetry did not occur in cells of the maturation zone. Because attempts to insert the electrode into cells of the root cap were unsuccessful, these cells were not measured. The hyperpolarization of cortical cells on the upper side was greatly reduced upon application of N,N'-dicyclohexylcarbodiimide (DCCD), an inhibitor of respiratory energy coupling. When stimulated roots were returned to the vertical, the degree of hyperpolarization of cortical cells on the previous upper side decreased within 30 s and approached that of cortical cells in non-stimulated roots. This cycle of hyperpolarization/loss of hyperpolarization was repeatable at least ten times by alternately turning the root from the vertical to the horizontal and back again. The very short (<30 s) lag period of these electrical changes indicates that they may result from stimulus-perception and transduction within the elongation zone rather than from transmission of a signal from the root cap.

The initiation of lateral roots in the primary roots of maize (Zea mays L.) implies a reactivation of cell proliferation in a group of founder pericycle cells.

PubMed

Alarcón, M Victoria; Lloret, Pedro G; Martín-Partido, Gervasio; Salguero, Julio

2016-03-15

The initiation of lateral roots (LRs) has generally been viewed as a reactivation of proliferative activity in pericycle cells that are committed to initiate primordia. However, it is also possible that pericycle founder cells that initiate LRs never cease proliferative activity but rather are displaced to the most distal root zones while undertaking successive stages of LR initiation. In this study, we tested these two alternative hypotheses by examining the incorporation of 5-bromo-2'-deoxyuridine (BrdU) into the DNA of meristematic root cells of Zea mays. According to the values for the length of the cell cycle and values for cell displacement along the maize root, our results strongly suggest that pericycle cells that initiate LR primordia ceased proliferative activity upon exiting the meristematic zone. This finding is supported by the existence of a root zone between 4 and 20mm from the root cap junction, in which neither mitotic cells nor labelled nuclei were observed in phloem pericycle cells. Copyright © 2016 Elsevier GmbH. All rights reserved.

How can soil organic carbon stocks in agriculture be maintained or increased?

NASA Astrophysics Data System (ADS)

Don, Axel; Leifeld, Jens

2015-04-01

CO2 emissions from soils are 10 times higher than anthropogenic CO2 emissions from fossil burning with around 60 Pg C a-1. At the same time around 60 Pg of carbon is added to the soils as litter from roots and leaves. Thus, the balance between both fluxes is supposed to be zero for the global earth system in steady state without human perturbations. However, the global carbon flux has been altered by humans since thousands of years by extracting biomass carbon as food, feed and fiber with global estimate of 40% of net primary productivity (NPP). This fraction is low in forests but agricultural systems, in particular croplands, are systems with a high net exported carbon fraction. Soils are mainly input driven systems. Agricultural soils depend on input to compensate directly for i) respiration losses, ii) extraction of carbon (and nitrogen) and depletion (e.g. via manure) or indirectly via enhances NPP (e.g. via fertilization management). In a literature review we examined the role of biomass extraction and carbon input via roots, crop residues and amendments (manure, slurry etc.) to agricultural soil's carbon stocks. Recalcitrance of biomass carbon was found to be of minor importance for long-term carbon storage. Thus, also the impact of crop type on soil carbon dynamics seems mainly driven by the amount of crop residuals of different crop types. However, we found distinct differences in the efficiency of C input to refill depleted soil C stocks between above ground C input or below ground root litter C input, with root-C being more efficient due to slower turnover rates. We discuss the role of different measures to decrease soil carbon turnover (e.g. decreased tillage intensity) as compared to measures that increase C input (e.g. cover crops) in the light of global developments in agricultural management with ongoing specialization and segregation between catch crop production and dairy farms.

Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics.

PubMed

Das, Abhiram; Schneider, Hannah; Burridge, James; Ascanio, Ana Karine Martinez; Wojciechowski, Tobias; Topp, Christopher N; Lynch, Jonathan P; Weitz, Joshua S; Bucksch, Alexander

2015-01-01

Plant root systems are key drivers of plant function and yield. They are also under-explored targets to meet global food and energy demands. Many new technologies have been developed to characterize crop root system architecture (CRSA). These technologies have the potential to accelerate the progress in understanding the genetic control and environmental response of CRSA. Putting this potential into practice requires new methods and algorithms to analyze CRSA in digital images. Most prior approaches have solely focused on the estimation of root traits from images, yet no integrated platform exists that allows easy and intuitive access to trait extraction and analysis methods from images combined with storage solutions linked to metadata. Automated high-throughput phenotyping methods are increasingly used in laboratory-based efforts to link plant genotype with phenotype, whereas similar field-based studies remain predominantly manual low-throughput. Here, we present an open-source phenomics platform "DIRT", as a means to integrate scalable supercomputing architectures into field experiments and analysis pipelines. DIRT is an online platform that enables researchers to store images of plant roots, measure dicot and monocot root traits under field conditions, and share data and results within collaborative teams and the broader community. The DIRT platform seamlessly connects end-users with large-scale compute "commons" enabling the estimation and analysis of root phenotypes from field experiments of unprecedented size. DIRT is an automated high-throughput computing and collaboration platform for field based crop root phenomics. The platform is accessible at http://www.dirt.iplantcollaborative.org/ and hosted on the iPlant cyber-infrastructure using high-throughput grid computing resources of the Texas Advanced Computing Center (TACC). DIRT is a high volume central depository and high-throughput RSA trait computation platform for plant scientists working on crop roots. It enables scientists to store, manage and share crop root images with metadata and compute RSA traits from thousands of images in parallel. It makes high-throughput RSA trait computation available to the community with just a few button clicks. As such it enables plant scientists to spend more time on science rather than on technology. All stored and computed data is easily accessible to the public and broader scientific community. We hope that easy data accessibility will attract new tool developers and spur creative data usage that may even be applied to other fields of science.

When should irrigators invest in more water-efficient technologies as an adaptation to climate change?

NASA Astrophysics Data System (ADS)

Malek, K.; Adam, J. C.; Stockle, C.; Brady, M.; Yoder, J.

2015-12-01

The western US is expected to experience more frequent droughts with higher magnitudes and persistence due to the climate change, with potentially large impacts on agricultural productivity and the economy. Irrigated farmers have many options for minimizing drought impacts including changing crops, engaging in water markets, and switching irrigation technologies. Switching to more efficient irrigation technologies, which increase water availability in the crop root zone through reduction of irrigation losses, receives significant attention because of the promise of maintaining current production with less. However, more efficient irrigation systems are almost always more capital-intensive adaptation strategy particularly compared to changing crops or trading water. A farmer's decision to switch will depend on how much money they project to save from reducing drought damages. The objective of this study is to explore when (and under what climate change scenarios) it makes sense economically for farmers to invest in a new irrigation system. This study was performed over the Yakima River Basin (YRB) in Washington State, although the tools and information gained from this study are transferable to other watersheds in the western US. We used VIC-CropSyst, a large-scale grid-based modeling framework that simulates hydrological processes while mechanistically capturing crop water use, growth and development. The water flows simulated by VIC-CropSyst were used to run the RiverWare river system and water management model (YAK-RW), which simulates river processes and calculates regional water availability for agricultural use each day (i.e., the prorationing ratio). An automated computational platform has been developed and programed to perform the economic analysis for each grid cell, crop types and future climate projections separately, which allows us to explore whether or not implementing a new irrigation system is economically viable. Results of this study indicate that climate change could justify the investment in new irrigation systems during this century, but the timing of a farmer's response is likely to depend on a variety of factors, including changes in the frequency and magnitude of drought events, current irrigation systems, climatological characteristics within the basin, and crop type.

Retrospective Analog Year Analyses Using NASA Satellite Data to Improve USDA's World Agricultural Supply and Demand Estimates

NASA Astrophysics Data System (ADS)

Teng, W. L.; Shannon, H. D.

2011-12-01

The USDA World Agricultural Outlook Board (WAOB) is responsible for monitoring weather and climate impacts on domestic and foreign crop development. One of WAOB's primary goals is to determine the net cumulative effect of weather and climate anomalies on final crop yields. To this end, a broad array of information is consulted, including maps, charts, and time series of recent weather, climate, and crop observations; numerical output from weather and crop models; and reports from the press, USDA attachés, and foreign governments. The resulting agricultural weather assessments are published in the Weekly Weather and Crop Bulletin, to keep farmers, policy makers, and commercial agricultural interests informed of weather and climate impacts on agriculture. Because both the amount and timing of precipitation significantly impact crop yields, WAOB often uses precipitation time series to identify growing seasons with similar weather patterns and help estimate crop yields for the current growing season, based on observed yields in analog years. Although, historically, these analog years are identified through visual inspection, the qualitative nature of this methodology sometimes precludes the definitive identification of the best analog year. One goal of this study is to introduce a more rigorous, statistical approach for identifying analog years. This approach is based on a modified coefficient of determination, termed the analog index (AI). The derivation of AI will be described. Another goal of this study is to compare the performance of AI for time series derived from surface-based observations vs. satellite-based measurements (NASA TRMM and other data). Five study areas and six growing seasons of data were analyzed (2003-2007 as potential analog years and 2008 as the target year). Results thus far show that, for all five areas, crop yield estimates derived from satellite-based precipitation data are closer to measured yields than are estimates derived from surface-based precipitation measurements. Work is continuing to include satellite-based surface soil moisture data and model-assimilated root zone soil moisture. This study is part of a larger effort to improve WAOB estimates by integrating NASA remote sensing observations and research results into WAOB's decision-making environment.

Enhancing USDA's Retrospective Analog Year Analyses Using NASA Satellite Precipitation and Soil Moisture Data

NASA Astrophysics Data System (ADS)

Teng, W. L.; Shannon, H. D.

2013-12-01

The USDA World Agricultural Outlook Board (WAOB) is responsible for monitoring weather and climate impacts on domestic and foreign crop development. One of WAOB's primary goals is to determine the net cumulative effect of weather and climate anomalies on final crop yields. To this end, a broad array of information is consulted, including maps, charts, and time series of recent weather, climate, and crop observations; numerical output from weather and crop models; and reports from the press, USDA attachés, and foreign governments. The resulting agricultural weather assessments are published in the Weekly Weather and Crop Bulletin, to keep farmers, policy makers, and commercial agricultural interests informed of weather and climate impacts on agriculture. Because both the amount and timing of precipitation significantly affect crop yields, WAOB has often, as part of its operational process, used historical time series of surface-based precipitation observations to visually identify growing seasons with similar (analog) weather patterns as, and help estimate crop yields for, the current growing season. As part of a larger effort to improve WAOB estimates by integrating NASA remote sensing observations and research results into WAOB's decision-making environment, a more rigorous, statistical method for identifying analog years was developed. This method, termed the analog index (AI), is based on the Nash-Sutcliffe model efficiency coefficient. The AI was computed for five study areas and six growing seasons of data analyzed (2003-2007 as potential analog years and 2008 as the target year). Previously reported results compared the performance of AI for time series derived from surface-based observations vs. satellite-retrieved precipitation data. Those results showed that, for all five areas, crop yield estimates derived from satellite-retrieved precipitation data are closer to measured yields than are estimates derived from surface-based precipitation observations. Subsequent work has compared the relative performance of AI for time series derived from satellite-retrieved surface soil moisture data and from root zone soil moisture derived from the assimilation of surface soil moisture data into a land surface model. These results, which also showed the potential benefits of satellite data for analog year analyses, will be presented.

Critical Zone Services as a Measure for Evaluating the Trade-offs in Intensively Managed Landscapes

NASA Astrophysics Data System (ADS)

Richardson, M.; Kumar, P.

2015-12-01

The Critical Zone includes the range of biophysical processes occurring from the top of the vegetation canopy to the weathering zone below the groundwater table. These services (Field et al. 2015) provide a measure to value processes that support the goods and services from our landscapes. In intensively managed landscapes the provisioning and regulating services are being altered through anthropogenic energy inputs so as to derive more agricultural productivity from the landscapes. Land use change and other alterations to the environment result in positive and/or negative net Critical Zone services. Through studies in the Critical Zone Observatory for Intensively Managed Landscapes (IMLCZO), this research seeks to answer questions such as: Are perennial bioenergy crops or annual replaced crops better for the land and surrounding environment? How do we evaluate the products and services from the land for the energy and resources we put in? Before the economic valuation of Critical Zone services, these questions seemed abstract. However, with developments such as Critical Zone services and life cycle assessments, they are more concrete. To evaluate the trade-offs between positive and negative impacts, life cycle assessments are used to create an inventory of all the energy inputs and outputs in a landscape management system. Total energy is computed by summing the mechanical energy used to construct tile drains, fertilizer, and other processes involved in intensely managed landscapes and the chemical energy gained by the production of biofuels from bioenergy crops. A multi-layer canopy model (MLCan) computes soil, water, and nutrient outputs for each crop type, which can be translated into Critical Zone services. These values are then viewed alongside the energy inputs into the system to show the relationship between agricultural practices and their corresponding ecosystem and environmental impacts.

Continuous cropping of endangered therapeutic plants via electron beam soil-treatment and neutron tomography.

PubMed

Sim, Cheul Muu; Seong, Bong Jae; Kim, Dong Won; Kim, Yong Bum; Wi, Seung Gon; Kim, Gyuil; Oh, Hwasuk; Kim, TaeJoo; Chung, Byung Yeoup; Song, Jeong Young; Kim, Hong Gi; Oh, Sang-Keun; Shin, Young Dol; Seok, Jea Hwan; Kang, Min Young; Lee, Yunhee; Radebe, Mabuti Jacob; Kardjilov, Nikolay; Honermeier, Bernd

2018-02-01

Various medicinal plants are threatened with extinction owing to their over-exploitation and the prevalence of soil borne pathogens. In this study, soils infected with root-rot pathogens, which prevent continuous-cropping, were treated with an electron beam. The level of soil-borne fungus was reduced to ≤0.01% by soil electron beam treatment without appreciable effects on the levels of antagonistic microorganism or on the physicochemical properties of the soil. The survival rate of 4-year-old plant was higher in electron beam-treated soil (81.0%) than in fumigated (62.5%), virgin (78%), or untreated-replanting soil (0%). Additionally, under various soils conditions, neutron tomography permitted the monitoring of plant health and the detection of root pathological changes over a period of 4-6 years by quantitatively measuring root water content in situ. These methods allow continual cropping on the same soil without pesticide treatment. This is a major step toward the environmentally friendly production of endangered therapeutic herbs.

Matching roots to their environment

PubMed Central

White, Philip J.; George, Timothy S.; Gregory, Peter J.; Bengough, A. Glyn; Hallett, Paul D.; McKenzie, Blair M.

2013-01-01

Background Plants form the base of the terrestrial food chain and provide medicines, fuel, fibre and industrial materials to humans. Vascular land plants rely on their roots to acquire the water and mineral elements necessary for their survival in nature or their yield and nutritional quality in agriculture. Major biogeochemical fluxes of all elements occur through plant roots, and the roots of agricultural crops have a significant role to play in soil sustainability, carbon sequestration, reducing emissions of greenhouse gasses, and in preventing the eutrophication of water bodies associated with the application of mineral fertilizers. Scope This article provides the context for a Special Issue of Annals of Botany on ‘Matching Roots to Their Environment’. It first examines how land plants and their roots evolved, describes how the ecology of roots and their rhizospheres contributes to the acquisition of soil resources, and discusses the influence of plant roots on biogeochemical cycles. It then describes the role of roots in overcoming the constraints to crop production imposed by hostile or infertile soils, illustrates root phenotypes that improve the acquisition of mineral elements and water, and discusses high-throughput methods to screen for these traits in the laboratory, glasshouse and field. Finally, it considers whether knowledge of adaptations improving the acquisition of resources in natural environments can be used to develop root systems for sustainable agriculture in the future. PMID:23821619

Contributions of roots and rootstocks to sustainable, intensified crop production.

PubMed

Gregory, Peter J; Atkinson, Christopher J; Bengough, A Glyn; Else, Mark A; Fernández-Fernández, Felicidad; Harrison, Richard J; Schmidt, Sonja

2013-03-01

Sustainable intensification is seen as the main route for meeting the world's increasing demands for food and fibre. As demands mount for greater efficiency in the use of resources to achieve this goal, so the focus on roots and rootstocks and their role in acquiring water and nutrients, and overcoming pests and pathogens, is increasing. The purpose of this review is to explore some of the ways in which understanding root systems and their interactions with soils could contribute to the development of more sustainable systems of intensive production. Physical interactions with soil particles limit root growth if soils are dense, but root-soil contact is essential for optimal growth and uptake of water and nutrients. X-ray microtomography demonstrated that maize roots elongated more rapidly with increasing root-soil contact, as long as mechanical impedance was not limiting root elongation, while lupin was less sensitive to changes in root-soil contact. In addition to selecting for root architecture and rhizosphere properties, the growth of many plants in cultivated systems is profoundly affected by selection of an appropriate rootstock. Several mechanisms for scion control by rootstocks have been suggested, but the causal signals are still uncertain and may differ between crop species. Linkage map locations for quantitative trait loci for disease resistance and other traits of interest in rootstock breeding are becoming available. Designing root systems and rootstocks for specific environments is becoming a feasible target.

Evapotranspiration and crop coefficient of oil palm (Elaeis guineensis Jacq.) on the main nursery in a greenhouse

NASA Astrophysics Data System (ADS)

Sigalingging, R.; Sumono; Rahmansyah, N.

2018-02-01

The estimation of crop water requirement is an important part of oil palm plantation because fruit yield of oil palm can be affected by water stress. Evapotranspiration and crop coefficient of oil palm using Tenera variety at 7-12 months old was determined. Soil texture was sandy loam with 73.8 % sand, 10.8 % silt, 15.77 % clay and 1.41 % organic matter. The results showed that the oil palm getting older decreased significantly in bulk density, particle density and porosity of soil caused the root of oil palm enlarged (19.42 g to 53.37 g). This was indicated by increased the dry root weight. On the other hand, the value of evapotranspiration and crop coefficient increased significantly, that was 1.85 to 2.00 mm/day and 0.8 to 0.87 respectively.

Adapting FAO-56 Spreadsheet Program to estimate olive orchard transpiration fluxes under soil water stress condition

NASA Astrophysics Data System (ADS)

Rallo, G.; Provenzano, G.; Manzano-Juárez, J.

2012-04-01

In the Mediterranean environment, where the period of crops growth does not coincide with the rainy season, the crop is subject to water stress periods that may be amplified with improper irrigation management. Agro-hydrological models can be considered an economic and simple tool to optimize irrigation water use, mainly when water represents a limiting factor for crop production. In the last two decades, agro-hydrological physically based models have been developed to simulate mass and energy exchange processes in the soil-plant-atmosphere system (Feddes et al., 1978; Bastiaanssen et al., 2007). Unfortunately these models, although very reliable, as a consequence of the high number of required variables and the complex computational analysis, cannot often be used. Therefore, simplified agro-hydrological models may represent an useful and simple tool for practical irrigation scheduling. The main objective of the work is to assess, for an olive orchard, the suitability of FAO-56 spreadsheet agro-hydrological model to estimate a long time series of field transpiration, soil water content and crop water stress dynamic. A modification of the spreadsheet is suggested in order to adapt the simulations to a crop tolerant to water stress. In particular, by implementing a new crop water stress function, actual transpiration fluxes and an ecophysiological stress indicator, i. e. the relative transpiration, are computed in order to evaluate a plant-based irrigation scheduling parameter. Validation of the proposed amendment is carried out by means of measured sap fluxes, measured on different plants and up-scaled to plot level. Spatial and temporal variability of soil water contents in the plot was measured, at several depths, using the Diviner 2000 capacitance probe (Sentek Environmental Technologies, 2000) and TDR-100 (Campbell scientific, Inc.) system. The detailed measurements of soil water content, allowed to explore the high spatial variability of soil water content due to the combined effect of the punctual irrigation and the non-uniform root density distribution. A further validation of the plant-based irrigation-timing indicator will be carried out by considering another ecophysiological stress variable like the predawn leaf water potential. Accuracy of the model output was assessed using the Mean Absolute Difference, the Root Mean Square Difference and the efficiency index of Nash and Sutcliffe. Experimental data, recorded during three years of field observation, allowed, with a great level of detail, to investigate on the dynamic of water fluxes from the soil to atmosphere as well as to validate the proposed amendment of the FAO-56 spreadsheet. The modified model simulated with a satisfactory approximation the measured values of average soil water content in the root zone, with error of estimation equal to about 2.0%. These differences can be considered acceptable for practical applications taking into account the intrinsic variability of the data especially in the soil moisture point measurements. An error less than 1 mm was calculated in the daily transpiration estimation. A good performance was observed in the estimation of the cumulate transpiration fluxes.

Climate impacts on agricultural biomass production in the CORDEX.be project context

NASA Astrophysics Data System (ADS)

Gobin, Anne; Van Schaeybroeck, Bert; Termonia, Piet; Willems, Patrick; Van Lipzig, Nicole; Marbaix, Philippe; van Ypersele, Jean-Pascal; Fettweis, Xavier; De Ridder, Koen; Stavrakou, Trissevgeni; Luyten, Patrick; Pottiaux, Eric

2016-04-01

The most important coordinated international effort to translate the IPCC-AR5 outcomes to regional climate modelling is the so-called "COordinated Regional climate Downscaling EXperiment" (CORDEX, http://wcrp-cordex.ipsl.jussieu.fr/). CORDEX.be is a national initiative that aims at combining the Belgian climate and impact modelling research into a single network. The climate network structure is naturally imposed by the top-down data flow, from the four participating upper-air Regional Climate Modelling groups towards seven Local Impact Models (LIMs). In addition to the production of regional climate projections following the CORDEX guidelines, very high-resolution results are provided at convection-permitting resolutions of about 4 km across Belgium. These results are coupled to seven local-impact models with severity indices as output. A multi-model approach is taken that allows uncertainty estimation, a crucial aspect of climate projections for policy-making purposes. The down-scaled scenarios at 4 km resolution allow for impact assessment in different Belgian agro-ecological zones. Climate impacts on arable agriculture are quantified using REGCROP which is a regional dynamic agri-meteorological model geared towards modelling climate impact on biomass production of arable crops (Gobin, 2010, 2012). Results from previous work show that heat stress and water shortages lead to reduced crop growth, whereas increased CO2-concentrations and a prolonged growing season have a positive effect on crop yields. The interaction between these effects depend on the crop type and the field conditions. Root crops such as potato will experience increased drought stress particularly when the probability rises that sensitive crop stages coincide with dry spells. This may be aggravated when wet springs cause water logging in the field and delay planting dates. Despite lower summer precipitation projections for future climate in Belgium, winter cereal yield reductions due to drought stress will be smaller due to earlier maturity. Preliminary results will be presented using the new scenario runs for Belgium.

Evaluation of Cover Crops with Potential for Use in Anaerobic Soil Disinfestation (ASD) for Susceptibility to Three Species of Meloidogyne

USDA-ARS?s Scientific Manuscript database

Several cover crops with potential for use in tropical and subtropical regions were assessed for susceptibility to three common species of root-knot nematode, Meloidogyne arenaria, M. incognita, and M. javanica. Crops were selected based on potential use as organic amendments in anaerobic soil disin...

Evaluation of Cuphea as a rotation crop for control of western corn rootworm (Coleoptera: Chrysomelidae).

PubMed

Behle, Robert W; Isbell, Terry A

2005-12-01

The ability to prevent significant root feeding damage to corn, Zea mays L., by the western corn rootworm, Diabrotica virgifera virgifera LeConte, by crop rotation with soybean, Glycine max (L.) Merr., has been lost in portions of the Corn Belt because this pest has adapted to laying eggs in soybean fields. Cuphea spp. has been proposed as a new broadleaf crop that may provide an undesirable habitat for rootworm adults because of its sticky surface and therefore may reduce or prevent oviposition in these fields. A 4-yr study (1 yr to establish seven rotation programs followed by 3 yr of evaluation) was conducted to determine whether crop rotation with Cuphea would provide cultural control of corn rootworm. In support of Cuphea as a rotation crop, fewer beetles were captured by sticky traps in plots of Cuphea over the 4 yr of this study compared with traps in corn and soybean, suggesting that fewer eggs may be laid in plots planted to Cuphea. Also, corn grown after Cuphea was significantly taller during vegetative growth, had significantly lower root damage ratings for 2 of 3 yr, and had significantly higher yields for 2 of 3 yr compared with continuous corn plots. In contrast to these benefits, growing Cuphea did not prevent economic damage to subsequent corn crops as indicated by root damage ratings > 3.0 recorded for corn plants in plots rotated from Cuphea, and sticky trap catches that exceeded the threshold of five beetles trap(-1) day(-1). Beetle emergence from corn plots rotated from Cuphea was significantly lower, not different and significantly higher compared with beetle emergence from continuous corn plots for 2002, 2003 and 2004 growing seasons, respectively. A high number of beetles were captured by emergence cages in plots planted to Cuphea, indicating that rootworm larvae may be capable of completing larval development by feeding on roots of Cuphea, although peak emergence lagged approximately 4 wk behind peak emergence from corn. Based on these data, it is unlikely that crop rotation with Cuphea will provide consistent, economical, cultural control of corn rootworm.

76 FR 67379 - Importation of Dracaena Plants From Costa Rica

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-01

... rooting zone for plants produced by air layering) to the farthest terminal growing point. Paragraph (y)(2... the soil line (or top of the rooting zone for plants produced by air layering) to the farthest...

Microsurgical removal of epidermal and cortical cells: evidence that the gravitropic signal moves through the outer cell layers in primary roots of maize

NASA Technical Reports Server (NTRS)

Yang, R. L.; Evans, M. L.; Moore, R.

1990-01-01

There is general agreement that during root gravitropism some sort of growth-modifying signal moves from the cap to the elongation zone and that this signal ultimately induces the curvature that leads to reorientation of the root. However, there is disagreement regarding both the nature of the signal and the pathway of its movement from the root cap to the elongation zone. We examined the pathway of movement by testing gravitropism in primary roots of maize (Zea mays L.) from which narrow (0.5 mm) rings of epidermal and cortical tissue were surgically removed from various positions within the elongation zone. When roots were girdled in the apical part of the elongation zone gravitropic curvature occurred apical to the girdle but not basal to the girdle. Filling the girdle with agar allowed curvature basal to the girdle to occur. Shallow girdles, in which only two or three cell layers (epidermis plus one or two cortical cell layers) were removed, prevented or greatly delayed gravitropic curvature basal to the girdle. The results indicate that the gravitropic signal moves basipetally through the outermost cell layers, perhaps through the epidermis itself.

Comparison of different assimilation methodologies of groundwater levels to improve predictions of root zone soil moisture with an integrated terrestrial system model

NASA Astrophysics Data System (ADS)

Zhang, Hongjuan; Kurtz, Wolfgang; Kollet, Stefan; Vereecken, Harry; Franssen, Harrie-Jan Hendricks

2018-01-01

The linkage between root zone soil moisture and groundwater is either neglected or simplified in most land surface models. The fully-coupled subsurface-land surface model TerrSysMP including variably saturated groundwater dynamics is used in this work. We test and compare five data assimilation methodologies for assimilating groundwater level data via the ensemble Kalman filter (EnKF) to improve root zone soil moisture estimation with TerrSysMP. Groundwater level data are assimilated in the form of pressure head or soil moisture (set equal to porosity in the saturated zone) to update state vectors. In the five assimilation methodologies, the state vector contains either (i) pressure head, or (ii) log-transformed pressure head, or (iii) soil moisture, or (iv) pressure head for the saturated zone only, or (v) a combination of pressure head and soil moisture, pressure head for the saturated zone and soil moisture for the unsaturated zone. These methodologies are evaluated in synthetic experiments which are performed for different climate conditions, soil types and plant functional types to simulate various root zone soil moisture distributions and groundwater levels. The results demonstrate that EnKF cannot properly handle strongly skewed pressure distributions which are caused by extreme negative pressure heads in the unsaturated zone during dry periods. This problem can only be alleviated by methodology (iii), (iv) and (v). The last approach gives the best results and avoids unphysical updates related to strongly skewed pressure heads in the unsaturated zone. If groundwater level data are assimilated by methodology (iii), EnKF fails to update the state vector containing the soil moisture values if for (almost) all the realizations the observation does not bring significant new information. Synthetic experiments for the joint assimilation of groundwater levels and surface soil moisture support methodology (v) and show great potential for improving the representation of root zone soil moisture.

The effect of different initial densities of nematode (Meloidogyne javanica) on the build-up of Pasteuria penetrans population.

PubMed

Darban, Daim Ali; Pathan, Mumtaz Ali; Bhatti, Abdul Ghaffar; Maitelo, Sultan Ahmed

2005-02-01

Pasteuria penetrans will build-up faster where there is a high initial nematode density and can suppress root-knot nematode populations in the roots of tomato plants. The effect of different initial densities of nematode (Meloidogyne javanica) (150, 750, 1500, 3000) and P. penetrans infected females (F1, F3) densities (F0=control and AC=absolute control without nematode or P. penetrans inoculum) on the build-up of Pasteuria population was investigated over four crop cycles. Two major points of interest were highlighted. First, that within a confined soil volume, densities of P. penetrans can increase >100 times within 2 or 3 crop cycles. Second, from a relatively small amount of spore inoculum, infection of the host is very high. There were more infected females in the higher P. penetrans doses. The root growth data confirms the greater number of females in the controls particularly at the higher inoculum densities in the third and fourth crops. P. penetrans generally caused the fresh root weights to be higher than those in the control. P. penetrans has shown greater reduction of egg masses per plant at most densities. The effects of different initial densities of M. javanica and P. penetrans on the development of the pest and parasite populations were monitored. And no attempt was made to return the P. penetrans spores to the pots after each crop so the build-up in actual numbers of infected females and spores under natural conditions may be underestimated.

Spatial and temporal patterns of root distribution in developing stands of four woody crop species grown with drip irrigation and fertilization

Treesearch

Mark Coleman

2007-01-01

In forest trees, roots mediate such significant carbon fluxes as primary production and soil C02 efflux. Despite the central role of roots in these critical processes, information on root distribution during stand establishment is limited, yet must be described to accurately predict how various forest types, which are growing with a range of...

Mustard catch crop enhances denitrification in shallow groundwater beneath a spring barley field.

PubMed

Jahangir, M M R; Minet, E P; Johnston, P; Premrov, A; Coxon, C E; Hackett, R; Richards, K G

2014-05-01

Over-winter green cover crops have been reported to increase dissolved organic carbon (DOC) concentrations in groundwater, which can be used as an energy source for denitrifiers. This study investigates the impact of a mustard catch crop on in situ denitrification and nitrous oxide (N2O) emissions from an aquifer overlain by arable land. Denitrification rates and N2O-N/(N2O-N+N2-N) mole fractions were measured in situ with a push-pull method in shallow groundwater under a spring barley system in experimental plots with and without a mustard cover crop. The results suggest that a mustard cover crop could substantially enhance reduction of groundwater nitrate NO3--N via denitrification without significantly increasing N2O emissions. Mean total denitrification (TDN) rates below mustard cover crop and no cover crop were 7.61 and 0.002 μg kg(-1) d(-1), respectively. Estimated N2O-N/(N2O-N+N2-N) ratios, being 0.001 and 1.0 below mustard cover crop and no cover crop respectively, indicate that denitrification below mustard cover crop reduces N2O to N2, unlike the plot with no cover crop. The observed enhanced denitrification under the mustard cover crop may result from the higher groundwater DOC under mustard cover crop (1.53 mg L(-1)) than no cover crop (0.90 mg L(-1)) being added by the root exudates and root masses of mustard. This study gives insights into the missing piece in agricultural nitrogen (N) balance and groundwater derived N2O emissions under arable land and thus helps minimise the uncertainty in agricultural N and N2O-N balances. Copyright © 2013 Elsevier Ltd. All rights reserved.

Dynamics of shoot vs. root C assessed by natural 13C abundance of their biomarkers

NASA Astrophysics Data System (ADS)

Mendez-Millan, Mercedes; Dignac, Marie-France; Rumpel, Cornelia; Rasse, Daniel P.; Derenne, Sylvie

2010-05-01

Cutins and suberins are biopolyesters that have been suggested to significantly contribute to the stable pool of soil organic matter (SOM). They might be used as tracers for the above- or belowground origin of plant material. The aim of this study was to evaluate the dynamics of shoot and root-derived biomarkers in soils using a wheat/maize (C3/C4) chronosequence. Our results suggest that α,?-alkanedioic acids can be considered as root specific markers and mid-chain hydroxy acids as shoot specific markers of wheat and maize in this agricultural soil. The changes of the 13C isotopic signatures of these markers with years of maize cropping after wheat evidenced their contrasted behaviour in soil. After 12 years of maize cropping, shoot markers present in soils probably originated from old C3 vegetation suggesting that new maize cutin added to soils was mostly degraded within a year. The reasons for long-term stabilisation of shoot biomarkers remain unclear. By contrast, maize root markers were highly incorporated into SOM during the first six years of maize crop, which suggested a selective preservation of root biomass when compared to shoots, possibly due to physical protection. The contrasting distribution of the plant-specific monomers in plants and soils might be explained by different chemical mechanisms leading to selective degradation or stabilization of some biomarkers.

X-Ray Computed Tomography Reveals the Response of Root System Architecture to Soil Texture1[OPEN

PubMed Central

Rogers, Eric D.; Monaenkova, Daria; Mijar, Medhavinee; Goldman, Daniel I.

2016-01-01

Root system architecture (RSA) impacts plant fitness and crop yield by facilitating efficient nutrient and water uptake from the soil. A better understanding of the effects of soil on RSA could improve crop productivity by matching roots to their soil environment. We used x-ray computed tomography to perform a detailed three-dimensional quantification of changes in rice (Oryza sativa) RSA in response to the physical properties of a granular substrate. We characterized the RSA of eight rice cultivars in five different growth substrates and determined that RSA is the result of interactions between genotype and growth environment. We identified cultivar-specific changes in RSA in response to changing growth substrate texture. The cultivar Azucena exhibited low RSA plasticity in all growth substrates, whereas cultivar Bala root depth was a function of soil hardness. Our imaging techniques provide a framework to study RSA in different growth environments, the results of which can be used to improve root traits with agronomic potential. PMID:27208237

Nitrogen fertilizer rate affects root exudation, the rhizosphere microbiome and nitrogen-use-efficiency of maize

USDA-ARS?s Scientific Manuscript database

The composition and function of microbial communities present in the rhizosphere of crops has been linked to edaphic factors and root exudate composition. In this paper, we examined the effect of N fertilizer rate on maize root exudation, the associated rhizosphere community, and nitrogen-use-effici...