The Communicability of Graphical Alternatives to Tabular Displays of Statistical Simulation Studies

PubMed Central

Cook, Alex R.; Teo, Shanice W. L.

2011-01-01

Simulation studies are often used to assess the frequency properties and optimality of statistical methods. They are typically reported in tables, which may contain hundreds of figures to be contrasted over multiple dimensions. To assess the degree to which these tables are fit for purpose, we performed a randomised cross-over experiment in which statisticians were asked to extract information from (i) such a table sourced from the literature and (ii) a graphical adaptation designed by the authors, and were timed and assessed for accuracy. We developed hierarchical models accounting for differences between individuals of different experience levels (under- and post-graduate), within experience levels, and between different table-graph pairs. In our experiment, information could be extracted quicker and, for less experienced participants, more accurately from graphical presentations than tabular displays. We also performed a literature review to assess the prevalence of hard-to-interpret design features in tables of simulation studies in three popular statistics journals, finding that many are presented innumerately. We recommend simulation studies be presented in graphical form. PMID:22132184

The communicability of graphical alternatives to tabular displays of statistical simulation studies.

PubMed

Cook, Alex R; Teo, Shanice W L

2011-01-01

Simulation studies are often used to assess the frequency properties and optimality of statistical methods. They are typically reported in tables, which may contain hundreds of figures to be contrasted over multiple dimensions. To assess the degree to which these tables are fit for purpose, we performed a randomised cross-over experiment in which statisticians were asked to extract information from (i) such a table sourced from the literature and (ii) a graphical adaptation designed by the authors, and were timed and assessed for accuracy. We developed hierarchical models accounting for differences between individuals of different experience levels (under- and post-graduate), within experience levels, and between different table-graph pairs. In our experiment, information could be extracted quicker and, for less experienced participants, more accurately from graphical presentations than tabular displays. We also performed a literature review to assess the prevalence of hard-to-interpret design features in tables of simulation studies in three popular statistics journals, finding that many are presented innumerately. We recommend simulation studies be presented in graphical form.

Assessment of Flood Mitigation Solutions Using a Hydrological Model and Refined 2D Hydrodynamic Simulations

NASA Astrophysics Data System (ADS)

Khuat Duy, B.; Archambeau, P.; Dewals, B. J.; Erpicum, S.; Pirotton, M.

2009-04-01

Following recurrent inundation problems on the Berwinne catchment, in Belgium, a combined hydrologic and hydrodynamic study has been carried out in order to find adequate solutions for the floods mitigation. Thanks to detailed 2D simulations, the effectiveness of the solutions can be assessed not only in terms of discharge and height reductions in the river, but also with other aspects such as the inundated surfaces reduction and the decrease of inundated buildings and roads. The study is carried out in successive phases. First, the hydrological runoffs are generated using a physically based and spatially distributed multi-layer model solving depth-integrated equations for overland flow, subsurface flow and baseflow. Real floods events are simulated using rainfall series collected at 8 stations (over 20 years of available data). The hydrological inputs are routed through the river network (and through the sewage network if relevant) with the 1D component of the modelling system, which solves the Saint-Venant equations for both free-surface and pressurized flows in a unified way. On the main part of the river, the measured river cross-sections are included in the modelling, and existing structures along the river (such as bridges, sluices or pipes) are modelled explicitely with specific cross sections. Two gauging stations with over 15 years of continuous measurements allow the calibration of both the hydrologic and hydrodynamic models. Second, the flood mitigation solutions are tested in the simulations in the case of an extreme flooding event, and their effects are assessed using detailed 2D simulations on a few selected sensitive areas. The digital elevation model comes from an airborne laser survey with a spatial resolution of 1 point per square metre and is completed in the river bed with a bathymetry interpolated from cross-section data. The upstream discharge is extracted from the 1D simulation for the selected rainfall event. The study carried out with this methodology allowed to assess the suggested solutions with multiple effectiveness criteria and therefore constitutes a very useful support for decision makers.

Enriched Air Nitrox Breathing Reduces Venous Gas Bubbles after Simulated SCUBA Diving: A Double-Blind Cross-Over Randomized Trial.

PubMed

Souday, Vincent; Koning, Nick J; Perez, Bruno; Grelon, Fabien; Mercat, Alain; Boer, Christa; Seegers, Valérie; Radermacher, Peter; Asfar, Pierre

2016-01-01

To test the hypothesis whether enriched air nitrox (EAN) breathing during simulated diving reduces decompression stress when compared to compressed air breathing as assessed by intravascular bubble formation after decompression. Human volunteers underwent a first simulated dive breathing compressed air to include subjects prone to post-decompression venous gas bubbling. Twelve subjects prone to bubbling underwent a double-blind, randomized, cross-over trial including one simulated dive breathing compressed air, and one dive breathing EAN (36% O2) in a hyperbaric chamber, with identical diving profiles (28 msw for 55 minutes). Intravascular bubble formation was assessed after decompression using pulmonary artery pulsed Doppler. Twelve subjects showing high bubble production were included for the cross-over trial, and all completed the experimental protocol. In the randomized protocol, EAN significantly reduced the bubble score at all time points (cumulative bubble scores: 1 [0-3.5] vs. 8 [4.5-10]; P < 0.001). Three decompression incidents, all presenting as cutaneous itching, occurred in the air versus zero in the EAN group (P = 0.217). Weak correlations were observed between bubble scores and age or body mass index, respectively. EAN breathing markedly reduces venous gas bubble emboli after decompression in volunteers selected for susceptibility for intravascular bubble formation. When using similar diving profiles and avoiding oxygen toxicity limits, EAN increases safety of diving as compared to compressed air breathing. ISRCTN 31681480.

Seasonal and interannual cross-shelf transport over the Texas and Louisiana continental shelf

NASA Astrophysics Data System (ADS)

Thyng, Kristen M.; Hetland, Robert D.

2018-05-01

Numerical drifters are tracked in a hydrodynamic simulation of circulation over the Texas-Louisiana shelf to analyze patterns in cross-shelf transport of materials. While the important forcing mechanisms in the region (wind, river, and deep eddies) and associated flow patterns are known, the resultant material transport is less well understood. The primary metric used in the calculations is the percent of drifters released within a region that cross the 100 m isobath. Results of the analysis indicate that, averaged over the eleven years of the simulation, there are two regions on the shelf - over the Texas shelf during winter, and over the Louisiana shelf in summer - with increased seasonal probability for offshore transport. Among the two other distinct regions, the big bend region in Texas has increased probability for onshore transport, and the Mississippi Delta region has an increase in offshore transport, for both seasons. Some of these regions of offshore transport have marked interannual variability. This interannual variability is correlated to interannual changes in forcing conditions. Winter transport off of the Texas shelf is correlated with winter mean wind direction, with more northerly winds enhancing offshore transport; summer transport off the Louisiana shelf is correlated with Mississippi River discharge.

Flexible chain molecules in the marginal and concentrated regimes: universal static scaling laws and cross-over predictions.

PubMed

Laso, Manuel; Karayiannis, Nikos Ch

2008-05-07

We present predictions for the static scaling exponents and for the cross-over polymer volumetric fractions in the marginal and concentrated solution regimes. Corrections for finite chain length are made. Predictions are based on an analysis of correlated fluctuations in density and chain length, in a semigrand ensemble in which mers and solvent sites exchange identities. Cross-over volumetric fractions are found to be chain length independent to first order, although reciprocal-N corrections are also estimated. Predicted scaling exponents and cross-over regimes are compared with available data from extensive off-lattice Monte Carlo simulations [Karayiannis and Laso, Phys. Rev. Lett. 100, 050602 (2008)] on freely jointed, hard-sphere chains of average lengths from N=12-500 and at packing densities from dilute ones up to the maximally random jammed state.

Transition path time distributions for Lévy flights

NASA Astrophysics Data System (ADS)

Janakiraman, Deepika

2018-07-01

This paper presents a study of transition path time distributions for Lévy noise-induced barrier crossing. Transition paths are short segments of the reactive trajectories and span the barrier region of the potential without spilling into the reactant/product wells. The time taken to traverse this segment is referred to as the transition path time. Since the transition path is devoid of excursions in the minimum, the corresponding time will give the exclusive barrier crossing time, unlike . This work explores the distribution of transition path times for superdiffusive barrier crossing, analytically. This is made possible by approximating the barrier by an inverted parabola. Using this approximation, the distributions are evaluated in both over- and under-damped limits of friction. The short-time behaviour of the distributions, provide analytical evidence for single-step transition events—a feature in Lévy-barrier crossing as observed in prior simulation studies. The average transition path time is calculated as a function of the Lévy index (α), and the optimal value of α leading to minimum average transition path time is discussed, in both the limits of friction. Langevin dynamics simulations corroborating with the analytical results are also presented.

Evaluation of CMIP5 continental precipitation simulations relative to satellite-based gauge-adjusted observations

NASA Astrophysics Data System (ADS)

Mehran, A.; AghaKouchak, A.; Phillips, T. J.

2014-02-01

The objective of this study is to cross-validate 34 Coupled Model Intercomparison Project Phase 5 (CMIP5) historical simulations of precipitation against the Global Precipitation Climatology Project (GPCP) data, quantifying model pattern discrepancies, and biases for both entire distributions and their upper tails. The results of the volumetric hit index (VHI) analysis of the total monthly precipitation amounts show that most CMIP5 simulations are in good agreement with GPCP patterns in many areas but that their replication of observed precipitation over arid regions and certain subcontinental regions (e.g., northern Eurasia, eastern Russia, and central Australia) is problematical. Overall, the VHI of the multimodel ensemble mean and median also are superior to that of the individual CMIP5 models. However, at high quantiles of reference data (75th and 90th percentiles), all climate models display low skill in simulating precipitation, except over North America, the Amazon, and Central Africa. Analyses of total bias (B) in CMIP5 simulations reveal that most models overestimate precipitation over regions of complex topography (e.g., western North and South America and southern Africa and Asia), while underestimating it over arid regions. Also, while most climate model simulations show low biases over Europe, intermodel variations in bias over Australia and Amazonia are considerable. The quantile bias analyses indicate that CMIP5 simulations are even more biased at high quantiles of precipitation. It is found that a simple mean field bias removal improves the overall B and VHI values but does not make a significant improvement at high quantiles of precipitation.

Effects of cross-linking on partitioning of nanoparticles into a polymer brush: Coarse-grained simulations test simple approximate theories

NASA Astrophysics Data System (ADS)

Ozmaian, Masoumeh; Jasnow, David; Eskandari Nasrabad, Afshin; Zilman, Anton; Coalson, Rob D.

2018-01-01

The effect of cohesive contacts or, equivalently, dynamical cross-linking on the equilibrium morphology of a polymer brush infiltrated by nanoparticles that are attracted to the polymer strands is studied for plane-grafted brushes using coarse-grained molecular dynamics and approximate statistical mechanical models. In particular, the Alexander-de Gennes (AdG) and Strong Stretching Theory (SST) mean-field theory (MFT) models are considered. It is found that for values of the MFT cross-link strength interaction parameter beyond a certain threshold, both AdG and SST models predict that the polymer brush will be in a compact state of nearly uniform density packed next to the grafting surface over a wide range of solution phase nanoparticle concentrations. Coarse grained molecular dynamics simulations confirm this prediction, for both small nanoparticles (nanoparticle volume = monomer volume) and large nanoparticles (nanoparticle volume = 27 × monomer volume). Simulation results for these cross-linked systems are compared with analogous results for systems with no cross-linking. At the same solution phase nanoparticle concentration, strong cross-linking results in additional compression of the brush relative to the non-crosslinked analog and, at all but the lowest concentrations, to a lesser degree of infiltration by nanoparticles. For large nanoparticles, the monomer density profiles show clear oscillations moving outwards from the grafting surface, corresponding to a degree of layering of the absorbed nanoparticles in the brush as they pack against the grafting surface.

A study of internal energy relaxation in shocks using molecular dynamics based models

NASA Astrophysics Data System (ADS)

Li, Zheng; Parsons, Neal; Levin, Deborah A.

2015-10-01

Recent potential energy surfaces (PESs) for the N2 + N and N2 + N2 systems are used in molecular dynamics (MD) to simulate rates of vibrational and rotational relaxations for conditions that occur in hypersonic flows. For both chemical systems, it is found that the rotational relaxation number increases with the translational temperature and decreases as the rotational temperature approaches the translational temperature. The vibrational relaxation number is observed to decrease with translational temperature and approaches the rotational relaxation number in the high temperature region. The rotational and vibrational relaxation numbers are generally larger in the N2 + N2 system. MD-quasi-classical trajectory (QCT) with the PESs is also used to calculate the V-T transition cross sections, the collision cross section, and the dissociation cross section for each collision pair. Direct simulation Monte Carlo (DSMC) results for hypersonic flow over a blunt body with the total collision cross section from MD/QCT simulations, Larsen-Borgnakke with new relaxation numbers, and the N2 dissociation rate from MD/QCT show a profile with a decreased translational temperature and a rotational temperature close to vibrational temperature. The results demonstrate that many of the physical models employed in DSMC should be revised as fundamental potential energy surfaces suitable for high temperature conditions become available.

Physical models, cross sections, and numerical approximations used in MCNP and GEANT4 Monte Carlo codes for photon and electron absorbed fraction calculation.

PubMed

Yoriyaz, Hélio; Moralles, Maurício; Siqueira, Paulo de Tarso Dalledone; Guimarães, Carla da Costa; Cintra, Felipe Belonsi; dos Santos, Adimir

2009-11-01

Radiopharmaceutical applications in nuclear medicine require a detailed dosimetry estimate of the radiation energy delivered to the human tissues. Over the past years, several publications addressed the problem of internal dose estimate in volumes of several sizes considering photon and electron sources. Most of them used Monte Carlo radiation transport codes. Despite the widespread use of these codes due to the variety of resources and potentials they offered to carry out dose calculations, several aspects like physical models, cross sections, and numerical approximations used in the simulations still remain an object of study. Accurate dose estimate depends on the correct selection of a set of simulation options that should be carefully chosen. This article presents an analysis of several simulation options provided by two of the most used codes worldwide: MCNP and GEANT4. For this purpose, comparisons of absorbed fraction estimates obtained with different physical models, cross sections, and numerical approximations are presented for spheres of several sizes and composed as five different biological tissues. Considerable discrepancies have been found in some cases not only between the different codes but also between different cross sections and algorithms in the same code. Maximum differences found between the two codes are 5.0% and 10%, respectively, for photons and electrons. Even for simple problems as spheres and uniform radiation sources, the set of parameters chosen by any Monte Carlo code significantly affects the final results of a simulation, demonstrating the importance of the correct choice of parameters in the simulation.

Temperature dependence of creep compliance of highly cross-linked epoxy: A molecular simulation study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khabaz, Fardin, E-mail: rajesh.khare@ttu.edu; Khare, Ketan S., E-mail: rajesh.khare@ttu.edu; Khare, Rajesh, E-mail: rajesh.khare@ttu.edu

2014-05-15

We have used molecular dynamics (MD) simulations to study the effect of temperature on the creep compliance of neat cross-linked epoxy. Experimental studies of mechanical behavior of cross-linked epoxy in literature commonly report creep compliance values, whereas molecular simulations of these systems have primarily focused on the Young’s modulus. In this work, in order to obtain a more direct comparison between experiments and simulations, atomistically detailed models of the cross-linked epoxy are used to study their creep compliance as a function of temperature using MD simulations. The creep tests are performed by applying a constant tensile stress and monitoring themore » resulting strain in the system. Our results show that simulated values of creep compliance increase with an increase in both time and temperature. We believe that such calculations of the creep compliance, along with the use of time temperature superposition, hold great promise in connecting the molecular insight obtained from molecular simulation at small length- and time-scales with the experimental behavior of such materials. To the best of our knowledge, this work is the first reported effort that investigates the creep compliance behavior of cross-linked epoxy using MD simulations.« less

A cross-assessment of CCI-ECVs and RCSM simulations over the Mediterranean area

NASA Astrophysics Data System (ADS)

D'Errico, Miriam; Planton, Serge; Nabat, Pierre

2017-04-01

A first objective of this study, conducted in the framework of the Climate Modelling Users Group (CMUG), one of the projects of the European Space Agency Climate Change Initiative (ESA CCI) program, is a cross-assessment of simulations of a Med-CORDEX regional climate system model (CNRM-RCSM5) and a sub-set of atmosphere, marine and surface interrelated Satellite-Derived Essential Climate Variables (CCI-ECVs) (i.e. sea surface temperature, sea level, aerosols and soil moisture content) over the Mediterranean area. The consistency between the model and the CCI-ECVs is evaluated through the analysis of a climate specific event that can be observed with the CCI-ECVs, in atmospheric reanalysis and reproduced in the RCSM simulations. In this presentation we focus on the July 2006 heat wave that affected the western part of the Mediterranean continental and marine area. The application of a spectral nudging method using ERA-Interim reanalysis in our simulation allows to reproduce this event with a proper chronology. As a result we show that the consistency between the simulated model aerosol optical depth and the ECV products (being produced by the ESA Aerosol CCI project consortium) depends on the choice of the algorithm used to infer the variable from the satellite observations. In particular the heat wave main characteristics become consistent between the model and the satellite-derived observations for sea surface temperature, soil moisture and sea level. The link between the atmospheric circulation and the aerosols distribution is also investigated.

Laparoscopic simulation training in gynaecology: Current provision and staff attitudes - a cross-sectional survey.

PubMed

Burden, Christy; Fox, Robert; Hinshaw, Kim; Draycott, Timothy J; James, Mark

2016-01-01

The objectives of this study were to explore current provision of laparoscopic simulation training, and to determine attitudes of trainers and trainees to the role of simulators in surgical training across the UK. An anonymous cross-sectional survey with cluster sampling was developed and circulated. All Royal College of Obstetricians and Gynaecologists (RCOG) Training Programme Directors (TPD), College Tutors (RCT) and Trainee representatives (TR) across the UK were invited to participate. One hundred and ninety-six obstetricians and gynaecologists participated. Sixty-three percent of hospitals had at least one box trainer, and 14.6% had least one virtual-reality simulator. Only 9.3% and 3.6% stated that trainees used a structured curriculum on box and virtual-reality simulators, respectively. Respondents working in a Large/Teaching hospital (p = 0.008) were more likely to agree that simulators enhance surgical training. Eighty-nine percent agreed that simulators improve the quality of training, and should be mandatory or desirable for junior trainees. Consultants (p = 0.003) and respondents over 40 years (p = 0.011) were more likely to hold that a simulation test should be undertaken before live operation. Our data demonstrated, therefore, that availability of laparoscopic simulators is inconsistent, with limited use of mandatory structured curricula. In contrast, both trainers and trainees recognise a need for greater use of laparoscopic simulation for surgical training.

Contact area of rough spheres: Large scale simulations and simple scaling laws

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pastewka, Lars, E-mail: lars.pastewka@kit.edu; Department of Physics and Astronomy, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218; Robbins, Mark O., E-mail: mr@pha.jhu.edu

2016-05-30

We use molecular simulations to study the nonadhesive and adhesive atomic-scale contact of rough spheres with radii ranging from nanometers to micrometers over more than ten orders of magnitude in applied normal load. At the lowest loads, the interfacial mechanics is governed by the contact mechanics of the first asperity that touches. The dependence of contact area on normal force becomes linear at intermediate loads and crosses over to Hertzian at the largest loads. By combining theories for the limiting cases of nominally flat rough surfaces and smooth spheres, we provide parameter-free analytical expressions for contact area over the wholemore » range of loads. Our results establish a range of validity for common approximations that neglect curvature or roughness in modeling objects on scales from atomic force microscope tips to ball bearings.« less

Effect of aggregation form on bioavailability of zeaxanthin in humans: a randomised cross-over study.

PubMed

Hempel, Judith; Fischer, Anja; Fischer, Monique; Högel, Josef; Bosy-Westphal, Anja; Carle, Reinhold; Schweiggert, Ralf M

2017-11-01

Carotenoid bioavailability from plant and animal food is highly variable depending on numerous factors such as the physical deposition form of carotenoids. As the carotenoid zeaxanthin is believed to play an important role in eye and brain health, we sought to compare the human bioavailability of an H-aggregated with that of a J-aggregated deposition form of zeaxanthin encapsulated into identical formulation matrices. A randomised two-way cross-over study with sixteen participants was designed to compare the post-prandial bioavailability of an H-aggregated zeaxanthin and a J-aggregated zeaxanthin dipalmitate formulation, both delivering 10 mg of free zeaxanthin. Carotenoid levels in TAG-rich lipoprotein fractions were analysed over 9·5 h after test meal consumption. Bioavailability from the J-aggregated formulation (AUC=55·9 nmol h/l) was 23 % higher than from the H-aggregated one (AUC=45·5 nmol h/l), although being only marginally significant (P=0·064). Furthermore, the same formulations were subjected to an internationally recognised in vitro digestion protocol to reveal potential strengths and weaknesses of simulated digestions. In agreement with our human study, liberation of zeaxanthin from the J-aggregated formulation into the simulated duodenal fluids was superior to that from the H-aggregated form. However, micellization rate (bioaccessibility) of the J-aggregated zeaxanthin dipalmitate was lower than that of the H-aggregated zeaxanthin, being contradictory to our in vivo results. An insufficient ester cleavage during simulated digestion was suggested to be the root cause for these observations. In brief, combining our in vitro and in vivo observations, the effect of the different aggregation forms on human bioavailability was lower than expected.

Broadband high-efficiency half-wave plate: a supercell-based plasmonic metasurface approach.

PubMed

Ding, Fei; Wang, Zhuoxian; He, Sailing; Shalaev, Vladimir M; Kildishev, Alexander V

2015-04-28

We design, fabricate, and experimentally demonstrate an ultrathin, broadband half-wave plate in the near-infrared range using a plasmonic metasurface. The simulated results show that the linear polarization conversion efficiency is over 97% with over 90% reflectance across an 800 nm bandwidth. Moreover, simulated and experimental results indicate that such broadband and high-efficiency performance is also sustained over a wide range of incident angles. To further obtain a background-free half-wave plate, we arrange such a plate as a periodic array of integrated supercells made of several plasmonic antennas with high linear polarization conversion efficiency, consequently achieving a reflection-phase gradient for the cross-polarized beam. In this design, the anomalous (cross-polarized) and the normal (copolarized) reflected beams become spatially separated, hence enabling highly efficient and robust, background-free polarization conversion along with broadband operation. Our results provide strategies for creating compact, integrated, and high-performance plasmonic circuits and devices.

Micro X-Ray Computed Tomography Mass Loss Assessment of Different UHMWPE: A Hip Joint Simulator Study on Standard vs. Cross-Linked Polyethylene

PubMed Central

Zanini, Filippo; Carmignato, Simone

2017-01-01

More than 60.000 hip arthroplasty are performed every year in Italy. Although Ultra-High-Molecular-Weight-Polyethylene remains the most used material as acetabular cup, wear of this material induces over time in vivo a foreign-body response and consequently osteolysis, pain, and the need of implant revision. Furthermore, oxidative wear of the polyethylene provoke several and severe failures. To solve these problems, highly cross-linked polyethylene and Vitamin-E-stabilized polyethylene were introduced in the last years. In in vitro experiments, various efforts have been made to compare the wear behavior of standard PE and vitamin-E infused liners. In this study we compared the in vitro wear behavior of two different configurations of cross-linked polyethylene (with and without the add of Vitamin E) vs. the standard polyethylene acetabular cups. The aim of the present study was to validate a micro X-ray computed tomography technique to assess the wear of different commercially available, polyethylene’s acetabular cups after wear simulation; in particular, the gravimetric method was used to provide reference wear values. The agreement between the two methods is documented in this paper. PMID:28107468

A single spacecraft method to study the spatial profiles inside the magnetopause

NASA Astrophysics Data System (ADS)

Dorville, Nicolas; Belmont, Gerard; Rezeau, Laurence; Aunai, Nicolas; Retino, Alessandro

2013-04-01

Previous magnetopause observations have revealed that the tangential magnetic field often rotates over C-shaped hodograms during the boundary crossing. Using observations of magnetopause crossings by the ESA Cluster mission and a simulation developed at LPP by Nicolas Aunai, we developed a single spacecraft method using the temporal information on the magnetic field in such crossings, complemented by the ion data. We can so obtain a 1D spatial parameter to characterize the depth in the layer and study the structure of the magnetopause as a function of this parameter. This allows using one single spacecraft magnetic data, completed by ion data at large temporal scales, to study the spatial structure of the boundary, and access scales that the particle temporal measurements of the four spacecraft do not permit. To obtain the normal direction and position, we first initialize our computations thanks to the standard MVABC method. Then we use the magnetic field data in the current layer, and suppose it is 1D, rotating in the tangential plane along an ellipse, with an angle variation essentially linear in space, with small sinusoidal perturbations. Making the assumption that the normal velocity of ions is dominated by the motion of the boundary and that the internal structure of the magnetopause is stationary over the duration of a crossing, we can compute the best normal direction and parameters of the model with CIS velocity and FGM magnetic field data, and so derive the spatial position of the spacecraft in the boundary. This method, which has been tested on the simulation data, could be applied successfully on several magnetopause crossings observed by Cluster. It directly gives a thickness and a normal direction, and permits to establish spatial profiles of all the physical quantities inside the boundary. It can be used to better understand the internal structure of the boundary, its physical properties and behavior regarding the flux conservation equations. The obtained results are compared with the results of other methods.

Numerical analysis of the dynamic interaction between wheel set and turnout crossing using the explicit finite element method

NASA Astrophysics Data System (ADS)

Xin, L.; Markine, V. L.; Shevtsov, I. Y.

2016-03-01

A three-dimensional (3-D) explicit dynamic finite element (FE) model is developed to simulate the impact of the wheel on the crossing nose. The model consists of a wheel set moving over the turnout crossing. Realistic wheel, wing rail and crossing geometries have been used in the model. Using this model the dynamic responses of the system such as the contact forces between the wheel and the crossing, crossing nose displacements and accelerations, stresses in rail material as well as in sleepers and ballast can be obtained. Detailed analysis of the wheel set and crossing interaction using the local contact stress state in the rail is possible as well, which provides a good basis for prediction of the long-term behaviour of the crossing (fatigue analysis). In order to tune and validate the FE model field measurements conducted on several turnouts in the railway network in the Netherlands are used here. The parametric study including variations of the crossing nose geometries performed here demonstrates the capabilities of the developed model. The results of the validation and parametric study are presented and discussed.

Micro Blowing Simulations Using a Coupled Finite-Volume Lattice-Boltzman n L ES Approach

NASA Technical Reports Server (NTRS)

Menon, S.; Feiz, H.

1990-01-01

Three dimensional large-eddy simulations (LES) of single and multiple jet-in-cross-flow (JICF) are conducted using the 19-bit Lattice Boltzmann Equation (LBE) method coupled with a conventional finite-volume (FV) scheme. In this coupled LBE-FV approach, the LBE-LES is employed to simulate the flow inside the jet nozzles while the FV-LES is used to simulate the crossflow. The key application area is the use of this technique is to study the micro blowing technique (MBT) for drag control similar to the recent experiments at NASA/GRC. It is necessary to resolve the flow inside the micro-blowing and suction holes with high resolution without being restricted by the FV time-step restriction. The coupled LBE-FV-LES approach achieves this objectives in a computationally efficient manner. A single jet in crossflow case is used for validation purpose and the results are compared with experimental data and full LBE-LES simulation. Good agreement with data is obtained. Subsequently, MBT over a flat plate with porosity of 25% is simulated using 9 jets in a compressible cross flow at a Mach number of 0.4. It is shown that MBT suppresses the near-wall vortices and reduces the skin friction by up to 50 percent. This is in good agreement with experimental data.

Effect of intruder mass on collisions with hard binaries. II - Dependence on impact parameter and computations of the interaction cross sections

NASA Astrophysics Data System (ADS)

Hills, J. G.

1992-06-01

Over 125,000 encounters between a hard binary with equal mass, components and orbital eccentricity of 0, and intruders with solar masses ranging from 0.01 to 10,000 are simulated. Each encounter was followed up to a maximum of 5 x 10 exp 6 integration steps to allow long-term 'resonances', temporary trinary systems, to break into a binary and a single star. These simulations were done over a range of impact parameters to find the cross sections for various processes occurring in these encounters. A critical impact parameter found in these simulations is the one beyond which no exchange collisions can occur. The energy exchange between the binary and a massive intruder decreases greatly in collisions with Rmin of not less than Rc. The semimajor axes and orbital eccentricity of the surviving binary also drops rapidly at Rc in encounters with massive intruders. The formation of temporary trinary systems is important for all intruder masses.

Investigation of novel fractal shape of the nano-aperture as a metasurface for bio sensing application

NASA Astrophysics Data System (ADS)

Heydari, Samaneh; Rastan, Iman; Parvin, Amin; Pirooj, Azadeh; Zarrabi, Ferdows B.

2017-01-01

Recently, nano-aperture is noticed due to its good transmission in the optical regime. Also, the nano-apertures are developed at the metasurface design for circular polarization; for this aim, various shapes of the nano-aperture are suggested. To reach this objective, we have developed a novel Jerusalem cross fractal shape for a mid-infrared application. We have simulated various formations of the nano-fractal Jerusalem cross based on a simple cross to show the effect of nano-aperture shape on electrical field enhancement in the near-field which is important in spectroscopy and optical imaging. In addition, we have used a single layer graphene over the aperture as a coat for making reconfigurable characteristic also creating a membrane for placement of nano-particle over the aperture. Implementation of the graphene is an amendment to the transfer of the nano-apertures. The biological materials with a thickness of 80 nm have been placed over the graphene layer and the Figures of Merits (FOM) have been obtained. Additionally, the prototype of nano-antenna is independent from incident wave polarization. The Finite Difference Time Domain (FDTD) calculations have been implemented in the simulation and modeling the nano-apertures.

Assessing self-care and social function using a computer adaptive testing version of the pediatric evaluation of disability inventory.

PubMed

Coster, Wendy J; Haley, Stephen M; Ni, Pengsheng; Dumas, Helene M; Fragala-Pinkham, Maria A

2008-04-01

To examine score agreement, validity, precision, and response burden of a prototype computer adaptive testing (CAT) version of the self-care and social function scales of the Pediatric Evaluation of Disability Inventory compared with the full-length version of these scales. Computer simulation analysis of cross-sectional and longitudinal retrospective data; cross-sectional prospective study. Pediatric rehabilitation hospital, including inpatient acute rehabilitation, day school program, outpatient clinics; community-based day care, preschool, and children's homes. Children with disabilities (n=469) and 412 children with no disabilities (analytic sample); 38 children with disabilities and 35 children without disabilities (cross-validation sample). Not applicable. Summary scores from prototype CAT applications of each scale using 15-, 10-, and 5-item stopping rules; scores from the full-length self-care and social function scales; time (in seconds) to complete assessments and respondent ratings of burden. Scores from both computer simulations and field administration of the prototype CATs were highly consistent with scores from full-length administration (r range, .94-.99). Using computer simulation of retrospective data, discriminant validity, and sensitivity to change of the CATs closely approximated that of the full-length scales, especially when the 15- and 10-item stopping rules were applied. In the cross-validation study the time to administer both CATs was 4 minutes, compared with over 16 minutes to complete the full-length scales. Self-care and social function score estimates from CAT administration are highly comparable with those obtained from full-length scale administration, with small losses in validity and precision and substantial decreases in administration time.

Computational simulation of laboratory-scale volcanic jets

NASA Astrophysics Data System (ADS)

Solovitz, S.; Van Eaton, A. R.; Mastin, L. G.; Herzog, M.

2017-12-01

Volcanic eruptions produce ash clouds that may travel great distances, significantly impacting aviation and communities downwind. Atmospheric hazard forecasting relies partly on numerical models of the flow physics, which incorporate data from eruption observations and analogue laboratory tests. As numerical tools continue to increase in complexity, they must be validated to fine-tune their effectiveness. Since eruptions are relatively infrequent and challenging to observe in great detail, analogue experiments can provide important insights into expected behavior over a wide range of input conditions. Unfortunately, laboratory-scale jets cannot easily attain the high Reynolds numbers ( 109) of natural volcanic eruption columns. Comparisons between the computational models and analogue experiments can help bridge this gap. In this study, we investigate a 3-D volcanic plume model, the Active Tracer High-resolution Atmospheric Model (ATHAM), which has been used to simulate a variety of eruptions. However, it has not been previously validated using laboratory-scale data. We conducted numerical simulations of three flows that we have studied in the laboratory: a vertical jet in a quiescent environment, a vertical jet in horizontal cross flow, and a particle-laden jet. We considered Reynolds numbers from 10,000 to 50,000, jet-to-cross flow velocity ratios of 2 to 10, and particle mass loadings of up to 25% of the exit mass flow rate. Vertical jet simulations produce Gaussian velocity profiles in the near exit region by 3 diameters downstream, matching the mean experimental profiles. Simulations of air entrainment are of the correct order of magnitude, but they show decreasing entrainment with vertical distance from the vent. Cross flow simulations reproduce experimental trajectories for the jet centerline initially, although confinement appears to impact the response later. Particle-laden simulations display minimal variation in concentration profiles between cases with different mass loadings and size distributions, indicating that differences in particle behavior may not be evident at this laboratory scale.

Analysis of vehicle dynamics under sadden cross wind

NASA Astrophysics Data System (ADS)

Walczak, S.

2016-09-01

In this paper, the way of calculating aerodynamic forces acting on a vehicle passing in the region of sadden cross wind was presented. The CarDyn, a vehicle dynamics simulation program, developed by the author was used. The effects of the cross wind were studied with a fixed steering wheel simulation. On the base of computer simulations the car cross wind sensitivity were determined, and vehicle responses such as lateral offset, side acceleration and yaw angular velocity are presented.

An Experimental Investigation of Intermittent Flow and Strain Burst Scaling Behavior in LiF Crystals During Microcompression Testing (Preprint)

DTIC Science & Technology

2010-01-01

or in more general terms, as a result of dislocation nucleation, motion, multiplication, and interaction). Nonetheless, state-of-the-art simulation ...computational power, together with under-developed physics within the simulation codes (i.e. cross-slip, climb, crystal rotations and patterning to...name a few), prevent realistic dislocation simulations over temporal and spatial domains that are readily accessible by experimental methods [9, 10

Adapting a Driving Simulator to Study Pedestrians' Street-Crossing Decisions: A Feasibility Study.

PubMed

Jäger, M; Nyffeler, T; Müri, R; Mosimann, U P; Nef, T

2015-01-01

The decision when to cross a street safely is a challenging task that poses high demands on perception and cognition. Both can be affected by normal aging, neurodegenerative disorder, and brain injury, and there is an increasing interest in studying street-crossing decisions. In this article, we describe how driving simulators can be modified to study pedestrians' street-crossing decisions. The driving simulator's projection system and the virtual driving environment were used to present street-crossing scenarios to the participants. New sensors were added to measure when the test person starts to cross the street. Outcome measures were feasibility, usability, task performance, and visual exploration behavior, and were measured in 15 younger persons, 15 older persons, and 5 post-stroke patients. The experiments showed that the test is feasible and usable, and the selected difficulty level was appropriate. Significant differences in the number of crashes between young participants and patients (p = .001) as well as between healthy older participants and patients (p = .003) were found. When the approaching vehicle's speed is high, significant differences between younger and older participants were found as well (p = .038). Overall, the new test setup was well accepted, and we demonstrated that driving simulators can be used to study pedestrians' street-crossing decisions.

Atomistic modeling of thermomechanical properties of SWNT/Epoxy nanocomposites

NASA Astrophysics Data System (ADS)

Fasanella, Nicholas; Sundararaghavan, Veera

2015-09-01

Molecular dynamics simulations are performed to compute thermomechanical properties of cured epoxy resins reinforced with pristine and covalently functionalized carbon nanotubes. A DGEBA-DDS epoxy network was built using the ‘dendrimer’ growth approach where 75% of available epoxy sites were cross-linked. The epoxy model is verified through comparisons to experiments, and simulations are performed on nanotube reinforced cross-linked epoxy matrix using the CVFF force field in LAMMPS. Full stiffness matrices and linear coefficient of thermal expansion vectors are obtained for the nanocomposite. Large increases in stiffness and large decreases in thermal expansion were seen along the direction of the nanotube for both nanocomposite systems when compared to neat epoxy. The direction transverse to nanotube saw a 40% increase in stiffness due to covalent functionalization over neat epoxy at 1 K whereas the pristine nanotube system only saw a 7% increase due to van der Waals effects. The functionalized SWNT/epoxy nanocomposite showed an additional 42% decrease in thermal expansion along the nanotube direction when compared to the pristine SWNT/epoxy nanocomposite. The stiffness matrices are rotated over every possible orientation to simulate the effects of an isotropic system of randomly oriented nanotubes in the epoxy. The randomly oriented covalently functionalized SWNT/Epoxy nanocomposites showed substantial improvements over the plain epoxy in terms of higher stiffness (200% increase) and lower thermal expansion (32% reduction). Through MD simulations, we develop means to build simulation cells, perform annealing to reach correct densities, compute thermomechanical properties and compare with experiments.

Simulation and Feedback in Health Education: A Mixed Methods Study Comparing Three Simulation Modalities.

PubMed

Tait, Lauren; Lee, Kenneth; Rasiah, Rohan; Cooper, Joyce M; Ling, Tristan; Geelan, Benjamin; Bindoff, Ivan

2018-05-03

Background . There are numerous approaches to simulating a patient encounter in pharmacy education. However, little direct comparison between these approaches has been undertaken. Our objective was to investigate student experiences, satisfaction, and feedback preferences between three scenario simulation modalities (paper-, actor-, and computer-based). Methods . We conducted a mixed methods study with randomized cross-over of simulation modalities on final-year Australian graduate-entry Master of Pharmacy students. Participants completed case-based scenarios within each of three simulation modalities, with feedback provided at the completion of each scenario in a format corresponding to each simulation modality. A post-simulation questionnaire collected qualitative and quantitative responses pertaining to participant satisfaction, experiences, and feedback preferences. Results . Participants reported similar levels satisfaction across all three modalities. However, each modality resulted in unique positive and negative experiences, such as student disengagement with paper-based scenarios. Conclusion . Importantly, the themes of guidance and opportunity for peer discussion underlie the best forms of feedback for students. The provision of feedback following simulation should be carefully considered and delivered, with all three simulation modalities producing both positive and negative experiences in regard to their feedback format.

Robust estimation procedure in panel data model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shariff, Nurul Sima Mohamad; Hamzah, Nor Aishah

2014-06-19

The panel data modeling has received a great attention in econometric research recently. This is due to the availability of data sources and the interest to study cross sections of individuals observed over time. However, the problems may arise in modeling the panel in the presence of cross sectional dependence and outliers. Even though there are few methods that take into consideration the presence of cross sectional dependence in the panel, the methods may provide inconsistent parameter estimates and inferences when outliers occur in the panel. As such, an alternative method that is robust to outliers and cross sectional dependencemore » is introduced in this paper. The properties and construction of the confidence interval for the parameter estimates are also considered in this paper. The robustness of the procedure is investigated and comparisons are made to the existing method via simulation studies. Our results have shown that robust approach is able to produce an accurate and reliable parameter estimates under the condition considered.« less

Large-scale structure perturbation theory without losing stream crossing

NASA Astrophysics Data System (ADS)

McDonald, Patrick; Vlah, Zvonimir

2018-01-01

We suggest an approach to perturbative calculations of large-scale clustering in the Universe that includes from the start the stream crossing (multiple velocities for mass elements at a single position) that is lost in traditional calculations. Starting from a functional integral over displacement, the perturbative series expansion is in deviations from (truncated) Zel'dovich evolution, with terms that can be computed exactly even for stream-crossed displacements. We evaluate the one-loop formulas for displacement and density power spectra numerically in 1D, finding dramatic improvement in agreement with N-body simulations compared to the Zel'dovich power spectrum (which is exact in 1D up to stream crossing). Beyond 1D, our approach could represent an improvement over previous expansions even aside from the inclusion of stream crossing, but we have not investigated this numerically. In the process we show how to achieve effective-theory-like regulation of small-scale fluctuations without free parameters.

Manual transmission enhances attention and driving performance of ADHD adolescent males: pilot study.

PubMed

Cox, Daniel J; Punja, Mohan; Powers, Katie; Merkel, R Lawrence; Burket, Roger; Moore, Melissa; Thorndike, Frances; Kovatchev, Boris

2006-11-01

Inattention is a major contributor to driving mishaps and is especially problematic among adolescent drivers with ADHD, possibly contributing to their 2 to 4 times higher incidence of collisions. Manual transmission has been demonstrated to be associated with greater arousal. This study tests the hypotheses that manual transmission, compared to automatic transmission, would be associated with better attention and performance on a driving simulator. Ten adolescent drivers with ADHD practice driving on the simulator in the manual and automatic mode. Employing a single-blind, cross-over design, participants drive the simulator at 19:30 and 22:30 hr for 30 min in both transmissions and rate their attention to driving. Subjectively, participants report being more attentive while driving in manual transmission mode. Objectively, participants drive safer in the manual transmission mode. Although in need of replication, this pilot study suggests a behavioral intervention to improve driving performance among ADHD adolescents.

Study of the homogeneity of the current distribution in a dielectric barrier discharge in air by means of a segmented electrode

DOE Office of Scientific and Technical Information (OSTI.GOV)

Malashin, M. V., E-mail: m-malashin@mail.ru; Moshkunov, S. I.; Khomich, V. Yu.

2016-02-15

The current distribution in a dielectric barrier discharge in atmospheric-pressure air at a natural humidity of 40–60% was studied experimentally with a time resolution of 200 ps. The experimental results are interpreted by means of numerically simulating the discharge electric circuit. The obtained results indicate that the discharge operating in the volumetric mode develops simultaneously over the entire transverse cross section of the discharge gap.

Cross-diffusion-driven hydrodynamic instabilities in a double-layer system: General classification and nonlinear simulations

NASA Astrophysics Data System (ADS)

Budroni, M. A.

2015-12-01

Cross diffusion, whereby a flux of a given species entrains the diffusive transport of another species, can trigger buoyancy-driven hydrodynamic instabilities at the interface of initially stable stratifications. Starting from a simple three-component case, we introduce a theoretical framework to classify cross-diffusion-induced hydrodynamic phenomena in two-layer stratifications under the action of the gravitational field. A cross-diffusion-convection (CDC) model is derived by coupling the fickian diffusion formalism to Stokes equations. In order to isolate the effect of cross-diffusion in the convective destabilization of a double-layer system, we impose a starting concentration jump of one species in the bottom layer while the other one is homogeneously distributed over the spatial domain. This initial configuration avoids the concurrence of classic Rayleigh-Taylor or differential-diffusion convective instabilities, and it also allows us to activate selectively the cross-diffusion feedback by which the heterogeneously distributed species influences the diffusive transport of the other species. We identify two types of hydrodynamic modes [the negative cross-diffusion-driven convection (NCC) and the positive cross-diffusion-driven convection (PCC)], corresponding to the sign of this operational cross-diffusion term. By studying the space-time density profiles along the gravitational axis we obtain analytical conditions for the onset of convection in terms of two important parameters only: the operational cross-diffusivity and the buoyancy ratio, giving the relative contribution of the two species to the global density. The general classification of the NCC and PCC scenarios in such parameter space is supported by numerical simulations of the fully nonlinear CDC problem. The resulting convective patterns compare favorably with recent experimental results found in microemulsion systems.

Effect of baffle spacing and baffle cut on thermal-hydraulic characteristics of the fluid flow

NASA Astrophysics Data System (ADS)

Chernyateva, R. R.

2018-01-01

This article presents the results of investigations of the influence of baffle spacing and baffle cut on the size of dead zone formed near the cross baffles using numerical simulation methods. It is showed the structure of an additional baffle plate which can be used to reduce the dead zone and smoother flow distribution over the cross section.

Bayesian Population Genomic Inference of Crossing Over and Gene Conversion

PubMed Central

Padhukasahasram, Badri; Rannala, Bruce

2011-01-01

Meiotic recombination is a fundamental cellular mechanism in sexually reproducing organisms and its different forms, crossing over and gene conversion both play an important role in shaping genetic variation in populations. Here, we describe a coalescent-based full-likelihood Markov chain Monte Carlo (MCMC) method for jointly estimating the crossing-over, gene-conversion, and mean tract length parameters from population genomic data under a Bayesian framework. Although computationally more expensive than methods that use approximate likelihoods, the relative efficiency of our method is expected to be optimal in theory. Furthermore, it is also possible to obtain a posterior sample of genealogies for the data using this method. We first check the performance of the new method on simulated data and verify its correctness. We also extend the method for inference under models with variable gene-conversion and crossing-over rates and demonstrate its ability to identify recombination hotspots. Then, we apply the method to two empirical data sets that were sequenced in the telomeric regions of the X chromosome of Drosophila melanogaster. Our results indicate that gene conversion occurs more frequently than crossing over in the su-w and su-s gene sequences while the local rates of crossing over as inferred by our program are not low. The mean tract lengths for gene-conversion events are estimated to be ∼70 bp and 430 bp, respectively, for these data sets. Finally, we discuss ideas and optimizations for reducing the execution time of our algorithm. PMID:21840857

Effects of cervical arthrodesis and arthroplasty on neck response during a simulated frontal automobile collision.

PubMed

White, Nicholas A; Moreno, Daniel P; Brown, Philip J; Gayzik, F Scott; Hsu, Wesley; Powers, Alexander K; Stitzel, Joel D

2014-09-01

Whereas arthrodesis is the most common surgical intervention for the treatment of symptomatic cervical degenerative disc disease, arthroplasty has become increasingly more popular over the past decade. Although literature exists comparing the effects of anterior cervical discectomy and fusion and cervical total disc replacement (CTDR) on neck kinematics and loading, the vast majority of these studies apply only quasi-static, noninjurious loading conditions to a segment of the cervical spine. The objective of this study was to investigate the effects of arthrodesis and arthroplasty on biomechanical neck response during a simulated frontal automobile collision with air bag deployment. This study used a full-body, 50th percentile seated male finite element (FE) model to evaluate neck response during a dynamic impact event. The cervical spine was modified to simulate either an arthrodesis or arthroplasty procedure at C5-C6. Five simulations of a belted driver, subjected to a 13.3 m/s ΔV frontal impact with air bag deployment, were run in LS-DYNA with the Global Human Body Models Consortium full-body FE model. The first simulation used the original model, with no modifications to the neck, whereas the remaining four were modified to represent either interbody arthrodesis or arthroplasty of C5-C6. Cross-sectional forces and moments at the C5 and C6 cervical levels of the neck, along with interbody and facet forces between C5 and C6, were reported. Adjacent-level, cross-sectional neck loading was maintained in all simulations without exceeding any established injury thresholds. Interbody compression was greatest for the CTDRs, and interbody tension occurred only in the fused and nonmodified spines. Some interbody separation occurred between the superior and inferior components of the CTDRs during flexion-induced tension of the cervical spine, increasing the facet loads. This study evaluated the effects of C5-C6 cervical arthrodesis and arthroplasty on neck response during a simulated frontal automobile impact. Although cervical arthrodesis and arthroplasty at C5-C6 did not appear to significantly alter the adjacent-level, cross-sectional neck responses during a simulated frontal automobile impact, key differences were noted in the interbody and facet loading. Copyright © 2014 Elsevier Inc. All rights reserved.

[Structural Damage to the Hamstring Graft due to Interaction with Fixation Material and its Effect on Biomechanical Properties of ACL Reconstruction].

PubMed

Kautzner, J; Držík, M; Handl, M; Povýšil, C; Kos, P; Trč, T; Havlas, V

2017-01-01

PURPOSE OF THE STUDY Hamstring grafts are commonly used for ACL reconstruction. The purpose of our study is to determine the effects of the suspension fixation compared to graft cross-pinning transfixation, and the effect(s) of structural damage during the preparation of the graft on biomechanical properties of the graft. MATERIAL AND METHODS The design of the study is a cadaveric biomechanical laboratory study. 38 fresh-frozen human hamstring specimens from 19 cadaveric donors were used. The grafts were tested for their loading properties. One half of each specimen was suspended over a 3.3mm pin, the other half was cross-pinned by a 3.3mm pin to simulate the graft cross-pinning technique. Single impact testing was performed and the failure force, elongation and acceleration/deceleration of each graft was recorded and the loading force vs. elongation of the graft specimens was calculated. Results for suspended and cross-pinned grafts were analysed using ANOVA method, comparing the grafts from each donor. RESULTS The ultimate strength of a double-strand gracilis graft was 1287 ± 134 N when suspended over a pin, the strength of a cross-pinned graft was 833 ± 111 N. For double-strand semitendinosus grafts the strengths were 1883 ± 198 and 997 ± 234 N, respectively. Thus, the failure load for the cross-pinning method is only 64.7% or 52.9% for the suspension method. DISCUSSION Structural damage to the graft significantly reduces the graft strength. Also, extensive suturing during preparation of the graft reduces its strength. CONCLUSIONS Fixation methods that do not interfere with the graft's structure should be used to reduce the risk of graft failure. Key words: ACL reconstruction, hamstring graft, biomechanical testing.

Experimental Errors in QSAR Modeling Sets: What We Can Do and What We Cannot Do.

PubMed

Zhao, Linlin; Wang, Wenyi; Sedykh, Alexander; Zhu, Hao

2017-06-30

Numerous chemical data sets have become available for quantitative structure-activity relationship (QSAR) modeling studies. However, the quality of different data sources may be different based on the nature of experimental protocols. Therefore, potential experimental errors in the modeling sets may lead to the development of poor QSAR models and further affect the predictions of new compounds. In this study, we explored the relationship between the ratio of questionable data in the modeling sets, which was obtained by simulating experimental errors, and the QSAR modeling performance. To this end, we used eight data sets (four continuous endpoints and four categorical endpoints) that have been extensively curated both in-house and by our collaborators to create over 1800 various QSAR models. Each data set was duplicated to create several new modeling sets with different ratios of simulated experimental errors (i.e., randomizing the activities of part of the compounds) in the modeling process. A fivefold cross-validation process was used to evaluate the modeling performance, which deteriorates when the ratio of experimental errors increases. All of the resulting models were also used to predict external sets of new compounds, which were excluded at the beginning of the modeling process. The modeling results showed that the compounds with relatively large prediction errors in cross-validation processes are likely to be those with simulated experimental errors. However, after removing a certain number of compounds with large prediction errors in the cross-validation process, the external predictions of new compounds did not show improvement. Our conclusion is that the QSAR predictions, especially consensus predictions, can identify compounds with potential experimental errors. But removing those compounds by the cross-validation procedure is not a reasonable means to improve model predictivity due to overfitting.

Experimental Errors in QSAR Modeling Sets: What We Can Do and What We Cannot Do

PubMed Central

2017-01-01

Numerous chemical data sets have become available for quantitative structure–activity relationship (QSAR) modeling studies. However, the quality of different data sources may be different based on the nature of experimental protocols. Therefore, potential experimental errors in the modeling sets may lead to the development of poor QSAR models and further affect the predictions of new compounds. In this study, we explored the relationship between the ratio of questionable data in the modeling sets, which was obtained by simulating experimental errors, and the QSAR modeling performance. To this end, we used eight data sets (four continuous endpoints and four categorical endpoints) that have been extensively curated both in-house and by our collaborators to create over 1800 various QSAR models. Each data set was duplicated to create several new modeling sets with different ratios of simulated experimental errors (i.e., randomizing the activities of part of the compounds) in the modeling process. A fivefold cross-validation process was used to evaluate the modeling performance, which deteriorates when the ratio of experimental errors increases. All of the resulting models were also used to predict external sets of new compounds, which were excluded at the beginning of the modeling process. The modeling results showed that the compounds with relatively large prediction errors in cross-validation processes are likely to be those with simulated experimental errors. However, after removing a certain number of compounds with large prediction errors in the cross-validation process, the external predictions of new compounds did not show improvement. Our conclusion is that the QSAR predictions, especially consensus predictions, can identify compounds with potential experimental errors. But removing those compounds by the cross-validation procedure is not a reasonable means to improve model predictivity due to overfitting. PMID:28691113

Assessing self-care and social function using a computer adaptive testing version of the Pediatric Evaluation of Disability Inventory Accepted for Publication, Archives of Physical Medicine and Rehabilitation

PubMed Central

Coster, Wendy J.; Haley, Stephen M.; Ni, Pengsheng; Dumas, Helene M.; Fragala-Pinkham, Maria A.

2009-01-01

Objective To examine score agreement, validity, precision, and response burden of a prototype computer adaptive testing (CAT) version of the Self-Care and Social Function scales of the Pediatric Evaluation of Disability Inventory (PEDI) compared to the full-length version of these scales. Design Computer simulation analysis of cross-sectional and longitudinal retrospective data; cross-sectional prospective study. Settings Pediatric rehabilitation hospital, including inpatient acute rehabilitation, day school program, outpatient clinics; community-based day care, preschool, and children’s homes. Participants Four hundred sixty-nine children with disabilities and 412 children with no disabilities (analytic sample); 38 children with disabilities and 35 children without disabilities (cross-validation sample). Interventions Not applicable. Main Outcome Measures Summary scores from prototype CAT applications of each scale using 15-, 10-, and 5-item stopping rules; scores from the full-length Self-Care and Social Function scales; time (in seconds) to complete assessments and respondent ratings of burden. Results Scores from both computer simulations and field administration of the prototype CATs were highly consistent with scores from full-length administration (all r’s between .94 and .99). Using computer simulation of retrospective data, discriminant validity and sensitivity to change of the CATs closely approximated that of the full-length scales, especially when the 15- and 10-item stopping rules were applied. In the cross-validation study the time to administer both CATs was 4 minutes, compared to over 16 minutes to complete the full-length scales. Conclusions Self-care and Social Function score estimates from CAT administration are highly comparable to those obtained from full-length scale administration, with small losses in validity and precision and substantial decreases in administration time. PMID:18373991

Effects of valerian on subjective sedation, field sobriety testing and driving simulator performance.

PubMed

Thomas, Kelan; Canedo, Joanne; Perry, Paul J; Doroudgar, Shadi; Lopes, Ingrid; Chuang, Hannah Mae; Bohnert, Kimberly

2016-07-01

The availability of herbal medicines over-the-counter (OTC) has increased the use of natural products for self-treatment. Valerian has been used to effectively treat generalized anxiety disorder and insomnia. Studies suggest that valerenic acid may increase gamma-aminobutyric acid (GABA) modulation in the brain. Benzodiazepines have a similar mechanism of action and have been linked to an increased risk of hospitalizations due to traffic accidents. Despite the risk of somnolence, the safety of driving while under the influence of valerian remains unknown. The purpose of the study was to determine the effects of a one-time valerian 1600mg dose on subjective sedation effects, standardized field sobriety testing (SFST) and driving simulator performance parameters. The study design was a randomized, placebo-controlled, double-blind, cross-over trial. For each session, participants received either a dose of valerian or placebo. The outcome measures included a simple visual reaction test (SVRT), subjective sleepiness scales, SFST performance scores, and driving simulator performance parameters. There were no significant differences in the SVRT or sleepiness scales between placebo and valerian exposures, but the study may have been underpowered. SFST total and individual test failure rates were not significantly different between the two exposures. The driving simulator performance parameters were equivalent between the two exposure conditions. A one-time valerian 1600mg dose, often used to treat insomnia, does not appear to impair driving simulator performance after acute ingestion. Copyright © 2016 Elsevier Ltd. All rights reserved.

Two-Photon Absorption Properties of Gold Fluorescent Protein: A Combined Molecular Dynamics and Quantum Chemistry Study.

PubMed

Şimşek, Yusuf; Brown, Alex

2018-06-07

Molecular dynamics (MD) simulations were carried out to obtain the conformational changes of the chromophore in the gold fluorescent protein (PDB ID: 1OXF ). To obtain two-photon absorption (TPA) cross-sections, time dependent density functional theory (TD-DFT) computations were performed for chromophore geometries sampled along the trajectory. The TD-DFT computations used the CAM-B3LYP functional and 6-31+G(d) basis set. Results showed that two dihedral angles change remarkably over the simulation time. TPA cross-sections were found to average 13.82 GM for the excitation to S 1 computed from the equilibrium geometries; however, extending the structures with a water molecule and GLU residue, which make H bonds with the chromophore molecule, increased excitation energies and TPA cross-sections significantly. Besides the effects of the surrounding residues and the dihedrals on the spectroscopic properties, some bond lengths affected the excitation energies and the TPA cross-sections significantly (up to ±25-30%), while the effects of the bond angles were smaller (±5%). Overall the present results provide insight into the effects of the conformational flexibility on TPA (with gold fluorescent protein as a specific example) and suggest that further experimental measurements of TPA for the gold fluorescent protein should be undertaken.

How do children learn to cross the street? The process of pedestrian safety training

PubMed Central

Schwebel, David C.; Shen, Jiabin; McClure, Leslie A.

2016-01-01

Objective Pedestrian injuries are a leading cause of child death, and may be reduced by training children to cross streets more safely. Such training is most effective when children receive repeated practice at the complex cognitive-perceptual task of judging moving traffic and selecting safe crossing gaps, but there is limited data on how much practice is required for children to reach adult levels of functioning. Using existing data, we examined how children’s pedestrian skill changed over the course of six pedestrian safety training sessions, each comprised of 45 crossings within a virtual pedestrian environment. Methods As part of a randomized controlled trial on pedestrian safety training, 59 children ages 7-8 crossed the street within a semi-immersive virtual pedestrian environment 270 times over a 3-week period (6 sessions of 45 crossings each). Feedback was provided after each crossing, and traffic speed and density was advanced as children’s skill improved. Post-intervention pedestrian behavior was assessed a week later in the virtual environment and compared to adult behavior with identical traffic patterns. Results Over the course of training, children entered traffic gaps more quickly and chose tighter gaps to cross within; their crossing efficiency appeared to increase. By the end of training, some aspects of children’s pedestrian behavior was comparable to adult behavior but other aspects were not, indicating the training was worthwhile but insufficient for most children to achieve adult levels of functioning. Conclusions Repeated practice in a simulated pedestrian environment helps children learn aspects of safe and efficient pedestrian behavior. Six twice-weekly training sessions of 45 crossings each were insufficient for children to reach adult pedestrian functioning, however, and future research should continue to study the trajectory and quantity of child pedestrian safety training needed for children to become competent pedestrians. PMID:26760077

Microstructurally Based Cross-slip Mechanisms and Their Effects on Dislocation Microstructure Evolution in fcc Crystals

DTIC Science & Technology

2015-01-01

still necessary. One such model that could bridge this gap is discrete dis- location dynamics ( DDD ) simulations, in which both the time- and length-scale...limitations from atomic simulations are greatly reduced. Over the past two decades, two-dimen- sional (2D) and three-dimensional (3D) DDD methods have...dislocation ensem- bles according to physics-based rules [27–34]. The physics that can be incorporated in DDD simulations can range http://dx.doi.org

Modular Aquatic Simulation System 1D

DOE Office of Scientific and Technical Information (OSTI.GOV)

2017-04-19

MASS1 simulates open channel hydrodynamics and transport in branched channel networks, using cross-section averaged forms of the continuity, momentum, and convection diffusion equations. Thermal energy transport (temperature), including meteorological influences is supported. The thermodynamics of total dissolved gas (TDG) can be directly simulated. MASS1 has been developed over the last 20 years. It is currently being used on DOE projects that require MASS1 to beopen source. Hence, the authors would like to distribute MASS1 in source form.

The effect of cross linking density on the mechanical properties and structure of the epoxy polymers: molecular dynamics simulation.

PubMed

Shokuhfar, Ali; Arab, Behrouz

2013-09-01

Recently, great attention has been focused on using epoxy polymers in different fields such as aerospace, automotive, biotechnology, and electronics, owing to their superior properties. In this study, the classical molecular dynamics (MD) was used to simulate the cross linking of diglycidyl ether of bisphenol-A (DGEBA) with diethylenetriamine (DETA) curing agent, and to study the behavior of resulted epoxy polymer with different conversion rates. The constant-strain (static) approach was then applied to calculate the mechanical properties (Bulk, shear and Young's moduli, elastic stiffness constants, and Poisson's ratio) of the uncured and cross-linked systems. Estimated material properties were found to be in good agreement with experimental observations. Moreover, the dependency of mechanical properties on the cross linking density was investigated and revealed improvements in the mechanical properties with increasing the cross linking density. The radial distribution function (RDF) was also used to study the evolution of local structures of the simulated systems as a function of cross linking density.

Effects of cross-bridge compliance on the force-velocity relationship and muscle power output

PubMed Central

Fenwick, Axel J.; Wood, Alexander M.

2017-01-01

Muscles produce force and power by utilizing chemical energy through ATP hydrolysis. During concentric contractions (shortening), muscles generate less force compared to isometric contractions, but consume greater amounts of energy as shortening velocity increases. Conversely, more force is generated and less energy is consumed during eccentric muscle contractions (lengthening). This relationship between force, energy use, and the velocity of contraction has important implications for understanding muscle efficiency, but the molecular mechanisms underlying this behavior remain poorly understood. Here we used spatially-explicit, multi-filament models of Ca2+-regulated force production within a half-sarcomere to simulate how force production, energy utilization, and the number of bound cross-bridges are affected by dynamic changes in sarcomere length. These computational simulations show that cross-bridge binding increased during slow-velocity concentric and eccentric contractions, compared to isometric contractions. Over the full ranges of velocities that we simulated, cross-bridge cycling and energy utilization (i.e. ATPase rates) increased during shortening, and decreased during lengthening. These findings are consistent with the Fenn effect, but arise from a complicated relationship between velocity-dependent cross-bridge recruitment and cross-bridge cycling kinetics. We also investigated how force production, power output, and energy utilization varied with cross-bridge and myofilament compliance, which is impossible to address under typical experimental conditions. These important simulations show that increasing cross-bridge compliance resulted in greater cross-bridge binding and ATPase activity, but less force was generated per cross-bridge and throughout the sarcomere. These data indicate that the efficiency of force production decreases in a velocity-dependent manner, and that this behavior is sensitive to cross-bridge compliance. In contrast, significant effects of myofilament compliance on force production were only observed during isometric contractions, suggesting that changes in myofilament compliance may not influence power output during non-isometric contractions as greatly as changes in cross-bridge compliance. These findings advance our understanding of how cross-bridge and myofilament properties underlie velocity-dependent changes in contractile efficiency during muscle movement. PMID:29284062

Effects of cross-bridge compliance on the force-velocity relationship and muscle power output.

PubMed

Fenwick, Axel J; Wood, Alexander M; Tanner, Bertrand C W

2017-01-01

Muscles produce force and power by utilizing chemical energy through ATP hydrolysis. During concentric contractions (shortening), muscles generate less force compared to isometric contractions, but consume greater amounts of energy as shortening velocity increases. Conversely, more force is generated and less energy is consumed during eccentric muscle contractions (lengthening). This relationship between force, energy use, and the velocity of contraction has important implications for understanding muscle efficiency, but the molecular mechanisms underlying this behavior remain poorly understood. Here we used spatially-explicit, multi-filament models of Ca2+-regulated force production within a half-sarcomere to simulate how force production, energy utilization, and the number of bound cross-bridges are affected by dynamic changes in sarcomere length. These computational simulations show that cross-bridge binding increased during slow-velocity concentric and eccentric contractions, compared to isometric contractions. Over the full ranges of velocities that we simulated, cross-bridge cycling and energy utilization (i.e. ATPase rates) increased during shortening, and decreased during lengthening. These findings are consistent with the Fenn effect, but arise from a complicated relationship between velocity-dependent cross-bridge recruitment and cross-bridge cycling kinetics. We also investigated how force production, power output, and energy utilization varied with cross-bridge and myofilament compliance, which is impossible to address under typical experimental conditions. These important simulations show that increasing cross-bridge compliance resulted in greater cross-bridge binding and ATPase activity, but less force was generated per cross-bridge and throughout the sarcomere. These data indicate that the efficiency of force production decreases in a velocity-dependent manner, and that this behavior is sensitive to cross-bridge compliance. In contrast, significant effects of myofilament compliance on force production were only observed during isometric contractions, suggesting that changes in myofilament compliance may not influence power output during non-isometric contractions as greatly as changes in cross-bridge compliance. These findings advance our understanding of how cross-bridge and myofilament properties underlie velocity-dependent changes in contractile efficiency during muscle movement.

Pilot age and expertise predict flight simulator performance: a 3-year longitudinal study.

PubMed

Taylor, Joy L; Kennedy, Quinn; Noda, Art; Yesavage, Jerome A

2007-02-27

Expert knowledge may compensate for age-related declines in basic cognitive and sensory-motor abilities in some skill domains. We investigated the influence of age and aviation expertise (indexed by Federal Aviation Administration pilot ratings) on longitudinal flight simulator performance. Over a 3-year period, 118 general aviation pilots aged 40 to 69 years were tested annually, in which their flight performance was scored in terms of 1) executing air-traffic controller communications; 2) traffic avoidance; 3) scanning cockpit instruments; 4) executing an approach to landing; and 5) a flight summary score. More expert pilots had better flight summary scores at baseline and showed less decline over time. Secondary analyses revealed that expertise effects were most evident in the accuracy of executing aviation communications, the measure on which performance declined most sharply over time. Regarding age, even though older pilots initially performed worse than younger pilots, over time older pilots showed less decline in flight summary scores than younger pilots. Secondary analyses revealed that the oldest pilots did well over time because their traffic avoidance performance improved more vs younger pilots. These longitudinal findings support previous cross-sectional studies in aviation as well as non-aviation domains, which demonstrated the advantageous effect of prior experience and specialized expertise on older adults' skilled cognitive performances.

Cross-flow shearing effects on the trajectory of highly buoyant bent-over plumes

NASA Astrophysics Data System (ADS)

Tohidi, Ali; Kaye, Nigel Berkeley; Gollner, Michael J.

2017-11-01

The dynamics of highly buoyant plumes in cross-flow is ubiquitous throughout both industrial and environmental phenomena. The rise of smoke from a chimney, wastewater discharge into river currents, and dispersion of wildfire plumes are only a few instances. There have been many previous studies investigating the behavior of jets and highly buoyant plumes in cross-flow. So far, however, very little attention has been paid to the role of shearing effects in the boundary layer on the plume trajectory, particularly on the rise height. Numerical simulations and dimensional analysis are conducted to characterize the near- and far-field behavior of a highly buoyant plume in a boundary layer cross-flow. The results show that shear in the cross-flow leads to large differences in the rise height of the plume in relation to a uniform cross-flow, especially at far-field. This material is based upon work supported by the National Science Foundation under Grant No.1200560. Any opinions, findings, and conclusions or recommendations expressed in the material are of the authors and do not necessarily reflect the views of NSF.

Direct simulation of heat transfer in a turbulent swept flow over a wire in a channel

NASA Astrophysics Data System (ADS)

Ranjan, Reetesh; Pantano, Carlos; Fischer, Paul; Siegel, Andrew

2009-11-01

We present results from direct numerical simulations of heat transfer (considered as a passive scalar) in a turbulent swept flow across a thin, cylindrical wire in a channel. This model mimics the flow through the wire-wrapped fuel pins typical of fast neutron reactor designs. Mean flow develops both along the wire and across the wire, leading to the formation of a turbulent cross-flow regime in the channel. This leads to improvement in heat transfer properties of the channel surface due to enhancement in mixing. The friction Reynolds number in the axial direction is approximately 305. Cross-flow friction Reynolds numbers ranging from 0 to 115 are examined. Two passive scalars at Prandtl number of 1.0 and 0.01 respectively, are simulated in this study. Constant flux boundary conditions are used along the walls of the channel and adiabatic conditions are used along the surface of the wire. The numerical method uses spectral elements in the plane perpendicular to the wire axis and Fourier decomposition in the direction of the axis of the wire. The simulations use up to 107 million collocation points and were performed at the Argonne Leadership BG/P supercomputer. The passive scalar field statistics are investigated, including mean scalar field, turbulence statistics and instantaneous surface scalar distribution.

Simulation of Cross-border Impacts Resulting from Classical Swine Fever Epidemics within the Netherlands and Germany.

PubMed

Hop, G E; Mourits, M C M; Oude Lansink, A G J M; Saatkamp, H W

2016-02-01

The cross-border region of the Netherlands (NL) and the two German states of North Rhine Westphalia (NRW) and Lower Saxony (LS) is a large and highly integrated livestock production area. This region increasingly develops towards a single epidemiological area in which disease introduction is a shared veterinary and, consequently, economic risk. The objectives of this study were to examine classical swine fever (CSF) control strategies' veterinary and direct economic impacts for NL, NRW and LS given the current production structure and to analyse CSF's cross-border causes and impacts within the NL-NRW-LS region. The course of the epidemic was simulated by the use of InterSpread Plus, whereas economic analysis was restricted to calculating disease control costs and costs directly resulting from the control measures applied. Three veterinary control strategies were considered: a strategy based on the minimum EU requirements, a vaccination and a depopulation strategy based on NL and GER's contingency plans. Regardless of the veterinary control strategy, simulated outbreak sizes and durations for 2010 were much smaller than those simulated previously, using data from over 10 years ago. For example, worst-case outbreaks (50th percentile) in NL resulted in 30-40 infected farms and lasted for two to four and a half months; associated direct costs and direct consequential costs ranged from €24.7 to 28.6 million and €11.7 to 26.7 million, respectively. Both vaccination and depopulation strategies were efficient in controlling outbreaks, especially large outbreaks, whereas the EU minimum strategy was especially deficient in controlling worst-case outbreaks. Both vaccination and depopulation strategies resulted in low direct costs and direct consequential costs. The probability of cross-border disease spread was relatively low, and cross-border spread resulted in small, short outbreaks in neighbouring countries. Few opportunities for further cross-border harmonization and collaboration were identified, including the implementation of cross-border regions (free and diseased regions regardless of the border) in case of outbreaks within close proximity of the border, and more and quicker sharing of information across the border. It was expected, however, that collaboration to mitigate the market effects of an epidemic will create more opportunities to lower the impact of CSF outbreaks in a cross-border context. © 2014 Blackwell Verlag GmbH.

Choosing appropriate analysis methods for cluster randomised cross-over trials with a binary outcome.

PubMed

Morgan, Katy E; Forbes, Andrew B; Keogh, Ruth H; Jairath, Vipul; Kahan, Brennan C

2017-01-30

In cluster randomised cross-over (CRXO) trials, clusters receive multiple treatments in a randomised sequence over time. In such trials, there is usual correlation between patients in the same cluster. In addition, within a cluster, patients in the same period may be more similar to each other than to patients in other periods. We demonstrate that it is necessary to account for these correlations in the analysis to obtain correct Type I error rates. We then use simulation to compare different methods of analysing a binary outcome from a two-period CRXO design. Our simulations demonstrated that hierarchical models without random effects for period-within-cluster, which do not account for any extra within-period correlation, performed poorly with greatly inflated Type I errors in many scenarios. In scenarios where extra within-period correlation was present, a hierarchical model with random effects for cluster and period-within-cluster only had correct Type I errors when there were large numbers of clusters; with small numbers of clusters, the error rate was inflated. We also found that generalised estimating equations did not give correct error rates in any scenarios considered. An unweighted cluster-level summary regression performed best overall, maintaining an error rate close to 5% for all scenarios, although it lost power when extra within-period correlation was present, especially for small numbers of clusters. Results from our simulation study show that it is important to model both levels of clustering in CRXO trials, and that any extra within-period correlation should be accounted for. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

An Equivalent cross-section Framework for improving computational efficiency in Distributed Hydrologic Modelling

NASA Astrophysics Data System (ADS)

Khan, Urooj; Tuteja, Narendra; Ajami, Hoori; Sharma, Ashish

2014-05-01

While the potential uses and benefits of distributed catchment simulation models is undeniable, their practical usage is often hindered by the computational resources they demand. To reduce the computational time/effort in distributed hydrological modelling, a new approach of modelling over an equivalent cross-section is investigated where topographical and physiographic properties of first-order sub-basins are aggregated to constitute modelling elements. To formulate an equivalent cross-section, a homogenization test is conducted to assess the loss in accuracy when averaging topographic and physiographic variables, i.e. length, slope, soil depth and soil type. The homogenization test indicates that the accuracy lost in weighting the soil type is greatest, therefore it needs to be weighted in a systematic manner to formulate equivalent cross-sections. If the soil type remains the same within the sub-basin, a single equivalent cross-section is formulated for the entire sub-basin. If the soil type follows a specific pattern, i.e. different soil types near the centre of the river, middle of hillslope and ridge line, three equivalent cross-sections (left bank, right bank and head water) are required. If the soil types are complex and do not follow any specific pattern, multiple equivalent cross-sections are required based on the number of soil types. The equivalent cross-sections are formulated for a series of first order sub-basins by implementing different weighting methods of topographic and physiographic variables of landforms within the entire or part of a hillslope. The formulated equivalent cross-sections are then simulated using a 2-dimensional, Richards' equation based distributed hydrological model. The simulated fluxes are multiplied by the weighted area of each equivalent cross-section to calculate the total fluxes from the sub-basins. The simulated fluxes include horizontal flow, transpiration, soil evaporation, deep drainage and soil moisture. To assess the accuracy of equivalent cross-section approach, the sub-basins are also divided into equally spaced multiple hillslope cross-sections. These cross-sections are simulated in a fully distributed settings using the 2-dimensional, Richards' equation based distributed hydrological model. The simulated fluxes are multiplied by the contributing area of each cross-section to get total fluxes from each sub-basin referred as reference fluxes. The equivalent cross-section approach is investigated for seven first order sub-basins of the McLaughlin catchment of the Snowy River, NSW, Australia, and evaluated in Wagga-Wagga experimental catchment. Our results show that the simulated fluxes using an equivalent cross-section approach are very close to the reference fluxes whereas computational time is reduced of the order of ~4 to ~22 times in comparison to the fully distributed settings. The transpiration and soil evaporation are the dominant fluxes and constitute ~85% of actual rainfall. Overall, the accuracy achieved in dominant fluxes is higher than the other fluxes. The simulated soil moistures from equivalent cross-section approach are compared with the in-situ soil moisture observations in the Wagga-Wagga experimental catchment in NSW, and results found to be consistent. Our results illustrate that the equivalent cross-section approach reduces the computational time significantly while maintaining the same order of accuracy in predicting the hydrological fluxes. As a result, this approach provides a great potential for implementation of distributed hydrological models at regional scales.

Combined caffeine and bright light reduces dangerous driving in sleep-deprived healthy volunteers: a pilot cross-over randomised controlled trial.

PubMed

Hartley, S L; Barbot, F; Machou, M; Lejaille, M; Moreau, B; Vaugier, I; Lofaso, F; Quera-Salva, M A

2013-06-01

To explore the effects of caffeine and bright light therapy on simulated nighttime driving in sleep-deprived healthy volunteers. Twelve male healthy volunteers aged 20 to 50 years participated in a randomized cross-over study of simulated nighttime driving at a sleep laboratory, followed by recovery sleep with polysomnography at home. The volunteers received variable combinations of caffeine 200mg (C+), caffeine placebo (C-), bright light 10,000 lux (L+), and bright light placebo<50 lux (L-), in four sessions (C+L+, C+L-, C-L+, C-L-), in random order with a wash-out period of 7 days. Treatments were given at 1 a.m. and testing was performed at 1:30 a.m., 3 a.m., 4 a.m., and 6 a.m. Lane drifting was the primary outcome measure. Other measures were reaction times, self-rated fatigue, sleepiness and recovery sleep. Without treatment, lane drifting increased throughout the night, and objective and subjective vigilance declined. Paired comparisons showed that lane drifting was significantly worse at 6 a.m. and at 4 a.m. than at 1:30 a.m. There was a global treatment effect on lane drifting. Lane drifting at 6 a.m. was significantly decreased with C+L+ compared to C-L-. Bright light therapy combined with caffeine administered at 1 a.m. decreased lane drifting by healthy volunteers during simulated nighttime driving. Copyright © 2013 Elsevier Masson SAS. All rights reserved.

Simulation of vertical dynamic vehicle-track interaction in a railway crossing using Green's functions

NASA Astrophysics Data System (ADS)

Li, X.; Torstensson, P. T.; Nielsen, J. C. O.

2017-12-01

Vertical dynamic vehicle-track interaction in the through route of a railway crossing is simulated in the time domain based on a Green's function approach for the track in combination with an implementation of Kalker's variational method to solve the non-Hertzian, and potentially multiple, wheel-rail contact. The track is described by a linear, three-dimensional and non-periodic finite element model of a railway turnout accounting for the variations in rail cross-sections and sleeper lengths, and including baseplates and resilient elements. To reduce calculation time due to the complexity of the track model, involving a large number of elements and degrees-of-freedom, a complex-valued modal superposition with a truncated mode set is applied before the impulse response functions are calculated at various positions along the crossing panel. The variation in three-dimensional contact geometry of the crossing and wheel is described by linear surface elements. In each time step of the contact detection algorithm, the lateral position of the wheelset centre is prescribed but the contact positions on wheel and rail are not, allowing for an accurate prediction of the wheel transition between wing rail and crossing rail. The method is demonstrated by calculating the wheel-rail impact load and contact stress distribution for a nominal S1002 wheel profile passing over a nominal crossing geometry. A parameter study is performed to determine the influence of vehicle speed, rail pad stiffness, lateral wheelset position and wheel profile on the impact load generated at the crossing. It is shown that the magnitude of the impact load is more influenced the wheel-rail contact geometry than by the selection of rail pad stiffness.

CAGE IIIA Distributed Simulation Design Methodology

DTIC Science & Technology

2014-05-01

2 VHF Very High Frequency VLC Video LAN Codec – an Open-source cross-platform multimedia player and framework VM Virtual Machine VOIP Voice Over...Implementing Defence Experimentation (GUIDEx). The key challenges for this methodology are with understanding how to: • design it o define the...operation and to be available in the other nation’s simulations. The challenge for the CAGE campaign of experiments is to continue to build upon this

Large-scale structure perturbation theory without losing stream crossing

DOE PAGES

McDonald, Patrick; Vlah, Zvonimir

2018-01-10

Here, we suggest an approach to perturbative calculations of large-scale clustering in the Universe that includes from the start the stream crossing (multiple velocities for mass elements at a single position) that is lost in traditional calculations. Starting from a functional integral over displacement, the perturbative series expansion is in deviations from (truncated) Zel’dovich evolution, with terms that can be computed exactly even for stream-crossed displacements. We evaluate the one-loop formulas for displacement and density power spectra numerically in 1D, finding dramatic improvement in agreement with N-body simulations compared to the Zel’dovich power spectrum (which is exact in 1D upmore » to stream crossing). Beyond 1D, our approach could represent an improvement over previous expansions even aside from the inclusion of stream crossing, but we have not investigated this numerically. In the process we show how to achieve effective-theory-like regulation of small-scale fluctuations without free parameters.« less

Large-scale structure perturbation theory without losing stream crossing

DOE Office of Scientific and Technical Information (OSTI.GOV)

McDonald, Patrick; Vlah, Zvonimir

Here, we suggest an approach to perturbative calculations of large-scale clustering in the Universe that includes from the start the stream crossing (multiple velocities for mass elements at a single position) that is lost in traditional calculations. Starting from a functional integral over displacement, the perturbative series expansion is in deviations from (truncated) Zel’dovich evolution, with terms that can be computed exactly even for stream-crossed displacements. We evaluate the one-loop formulas for displacement and density power spectra numerically in 1D, finding dramatic improvement in agreement with N-body simulations compared to the Zel’dovich power spectrum (which is exact in 1D upmore » to stream crossing). Beyond 1D, our approach could represent an improvement over previous expansions even aside from the inclusion of stream crossing, but we have not investigated this numerically. In the process we show how to achieve effective-theory-like regulation of small-scale fluctuations without free parameters.« less

Determination of Vertical Borehole and Geological Formation Properties using the Crossed Contour Method.

PubMed

Leyde, Brian P; Klein, Sanford A; Nellis, Gregory F; Skye, Harrison

2017-03-01

This paper presents a new method called the Crossed Contour Method for determining the effective properties (borehole radius and ground thermal conductivity) of a vertical ground-coupled heat exchanger. The borehole radius is used as a proxy for the overall borehole thermal resistance. The method has been applied to both simulated and experimental borehole Thermal Response Test (TRT) data using the Duct Storage vertical ground heat exchanger model implemented in the TRansient SYstems Simulation software (TRNSYS). The Crossed Contour Method generates a parametric grid of simulated TRT data for different combinations of borehole radius and ground thermal conductivity in a series of time windows. The error between the average of the simulated and experimental bore field inlet and outlet temperatures is calculated for each set of borehole properties within each time window. Using these data, contours of the minimum error are constructed in the parameter space of borehole radius and ground thermal conductivity. When all of the minimum error contours for each time window are superimposed, the point where the contours cross (intersect) identifies the effective borehole properties for the model that most closely represents the experimental data in every time window and thus over the entire length of the experimental data set. The computed borehole properties are compared with results from existing model inversion methods including the Ground Property Measurement (GPM) software developed by Oak Ridge National Laboratory, and the Line Source Model.

Cross-layer restoration with software defined networking based on IP over optical transport networks

NASA Astrophysics Data System (ADS)

Yang, Hui; Cheng, Lei; Deng, Junni; Zhao, Yongli; Zhang, Jie; Lee, Young

2015-10-01

The IP over optical transport network is a very promising networking architecture applied to the interconnection of geographically distributed data centers due to the performance guarantee of low delay, huge bandwidth and high reliability at a low cost. It can enable efficient resource utilization and support heterogeneous bandwidth demands in highly-available, cost-effective and energy-effective manner. In case of cross-layer link failure, to ensure a high-level quality of service (QoS) for user request after the failure becomes a research focus. In this paper, we propose a novel cross-layer restoration scheme for data center services with software defined networking based on IP over optical network. The cross-layer restoration scheme can enable joint optimization of IP network and optical network resources, and enhance the data center service restoration responsiveness to the dynamic end-to-end service demands. We quantitatively evaluate the feasibility and performances through the simulation under heavy traffic load scenario in terms of path blocking probability and path restoration latency. Numeric results show that the cross-layer restoration scheme improves the recovery success rate and minimizes the overall recovery time.

Simulations of Flooding on Pea River and Whitewater Creek in the Vicinity of the Proposed Elba Bypass at Elba, Alabama

USGS Publications Warehouse

Hedgecock, T. Scott

2003-01-01

A two-dimensional finite-element surface-water model was used to study the effects of proposed modifications to the State Highway 203 corridor (proposed Elba Bypass/relocated U.S. Highway 84) on water-surface elevations and flow distributions during flooding in the Pea River and Whitewater Creek Basins at Elba, Coffee County, Alabama. Flooding was first simulated for the March 17, 1990, flood, using the 1990 flood-plain conditions to calibrate the model to match measured data collected by the U.S. Geological Survey and the U.S. Army Corps of Engineers after the flood. After model calibration, the effects of flooding were simulated for four scenarios: (1) floods having the 50- and 100-year recurrence intervals for the existing flood-plain, bridge, highway, and levee conditions; (2) floods having the 50- and 100-year recurrence intervals for the existing flood-plain and levee conditions with the State Highway 203 embankment and bridge removed; (3) floods having the 50- and 100-year recurrence intervals for the existing flood-plain, bridge, and highway conditions with proposed modifications (elevating) to the levee; and (4) floods having the 50- and 100-year recurrence intervals for the proposed conditions reflecting the Elba Bypass and modified levee. The simulation of floodflow for the Pea River and Whitewater Creek flood of March 17, 1990, in the study reach compared closely to flood profile data obtained after the flood. The flood of March 17, 1990, had an estimated peak discharge of 58,000 cubic feet per second at the gage (just below the confluence) and was estimated to be between a 50-year and 100-year flood event. The estimated peak discharge for Pea River and Whitewater Creek was 40,000 and 42,000 cubic feet per second, respectively. Simulation of floodflows for the 50-year flood (51,400 cubic feet per second) at the gage for existing flood-plain, bridge, highway, and levee conditions indicated that about 31 percent of the peak flow was conveyed by the State Highway 203 bridge over Whitewater Creek, approximately 12 percent overtopped the State Highway 203 embankment, and about 57 percent was conveyed by the Pea River flood plain east of State Highway 125. For this simulation, flow from Pea River (2,380 cubic feet per second) overtopped State Highway 125 and crossed over into the Whitewater Creek flood plain north of State Highway 203, creating one common flood plain. The water-surface elevation estimated at the downstream side of the State Highway 203 bridge crossing Whitewater Creek was 202.82 feet. The girders for both the State Highway 203 and U.S. Highway 84 bridges were partially submerged, but U.S. Highway 84 was not overtopped. For the 100-year flood (63,500 cubic feet per second) at the gage, the simulation indicated that about 25 percent of the peak flow was conveyed by the State Highway 203 bridge over Whitewater Creek, approximately 24 percent overtopped the State Highway 203 embankment, and about 51 percent was conveyed by the Pea River flood plain east of State Highway 125. The existing levee adjacent to Whitewater Creek was overtopped by a flow of 3,200 cubic feet per second during the 100-year flood. For this simulation, flow from Pea River (6,710 cubic feet per second) overtopped State Highway 125 and crossed over into the Whitewater Creek flood plain north of State Highway 203. The water-surface elevation estimated at the downstream side of the State Highway 203 bridge crossing Whitewater Creek was 205.60 feet. The girders for both the State Highway 203 and U.S. Highway 84 bridges were partially submerged, and the west end of the U.S. Highway 84 bridge was overtopped. Simulation of floodflows for the 50-year flood at the gage for existing flood-plain and levee conditions, but with the State Highway 203 embankment and bridge removed, yielded a lower water-surface elevation (202.90 feet) upstream of this bridge than that computed for the existing conditions. For the 100-year flood, the simulation indi

Estimation of parameters related to vaccine efficacy and dengue transmission from two large phase III studies.

PubMed

Coudeville, Laurent; Baurin, Nicolas; Vergu, Elisabeta

2016-12-07

A tetravalent dengue vaccine was shown to be efficacious against symptomatic dengue in two phase III efficacy studies performed in five Asian and five Latin American countries. The objective here was to estimate key parameters of a dengue transmission model using the data collected during these studies. Parameter estimation was based on a Sequential Monte Carlo approach and used a cohort version of the transmission model. Serotype-specific basic reproduction numbers were derived for each country. Parameters related to serotype interactions included duration of cross-protection and level of cross-enhancement characterized by differences in symptomaticity for primary, secondary and post-secondary infections. We tested several vaccine efficacy profiles and simulated the evolution of vaccine efficacy over time for the scenarios providing the best fit to the data. Two reference scenarios were identified. The first included temporary cross-protection and the second combined cross-protection and cross-enhancement upon wild-type infection and following vaccination. Both scenarios were associated with differences in efficacy by serotype, higher efficacy for pre-exposed subjects and against severe dengue, increase in efficacy with doses for naïve subjects and by a more important waning of vaccine protection for subjects when naïve than when pre-exposed. Over 20 years, the median reduction of dengue risk induced by the direct protection conferred by the vaccine ranged from 24% to 47% according to country for the first scenario and from 34% to 54% for the second. Our study is an important first step in deriving a general framework that combines disease dynamics and mechanisms of vaccine protection that could be used to assess the impact of vaccination at a population level. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Simulation of Relationship between ENSO and winter precipitation over Western Himalayas: Application of Regional climate model (RegT-Band)

NASA Astrophysics Data System (ADS)

Tiwari, P. R.; Mohanty, U. C.; Dey, S.; Acharaya, N.; Sinha, P.

2012-12-01

Precipitation over the Western Himalayas region during winter is mainly associated with the passage of midlatitude synoptic systems known as western disturbances (WDs). Recently, many observational and modeling studies reported that the relationship of the Indian southwest monsoon rainfall with El Niño- Southern Oscillation (ENSO) has weakened since around 1980. But, in contrast, only very few observational studies are reported so far to examine the relationship between ENSO and the winter precipitation over the Western Himalayas region from December to February (DJF). But there is a huge gap of modeling this phenomenon. So keeping in view of the absence of modeling studies, an attempt is made to simulate the relationship between wintertime precipitations associated with large scale global forcing of ENSO over the Western Himalayas. In the present study, RegT-Band, a tropical band version of the regional climate model RegCM4 is integrated for a set of 5 El Niño (1986-87, 1991-92, 1997-98, 2002-03, 2009-10) and 4 La Niña (1984-85, 1988-89, 1999-2000, 2007-08) years with the observed sea-surface temperature and lateral boundary condition. The domain extends from 50° S to 50° N and covers the entire tropics at a grid spacing of about 45 km, i.e. it includes lateral boundary forcing only at the southern and northern boundaries. The performance evaluation of the model in capturing the large scale fields followed by ENSO response with wintertime precipitation over the Western Himalayas region has been carried out by using National Center for Environmental Prediction (NCEP)-Department of Energy (DOE) reanalysis 2 (NNRP2) data (2.5° x 2.5°) and Aphrodite precipitation data (0.25° x 0.25°). The model is able to delineate the mean circulation associated with ENSO over the region during DJF reasonably well and shows strong southwesterly to northwesterly wind flow, which is there in verification analysis also. The vertical structure of the low as well as upper level air circulation for the ENSO regimes has been also studied. For this purpose, a longitudional cross-section of the seasonal sectorial mean of the zonal and meridional winds is analyzed form NNRP2 and RegT-Band model simulations. The model simulated zonal wind is in good agreement with verification analysis however core speed of subtropical Westerly Jet Stream in upper level (around 150 hPa) is overestimated by the model. Further, the sectorial cross section of meridional wind indicates that the wind around 200 hPa is stronger during ENSO years, and this feature is emphasized well in the model simulation. So the upper and lower level sartorial components of wind supports the argument of strengthening of circulation associated with ENSO, and hence enhanced precipitation during ENSO-winter precipitation relationship. So our preliminary study indicates that the tropical band version of the regional climate model can be effectively used for the better understanding of these large scale global forcing's. This can improve the predictability of precipitation over this region and so it might help to come out with better socio-economic tools. Key words: Winter precipitation, El-Nino-southern oscillation, RegCM4, ENSO response and RegT-Band.

A Simplified Finite Element Simulation for Straightening Process of Thin-Walled Tube

NASA Astrophysics Data System (ADS)

Zhang, Ziqian; Yang, Huilin

2017-12-01

The finite element simulation is an effective way for the study of thin-walled tube in the two cross rolls straightening process. To determine the accurate radius of curvature of the roll profile more efficiently, a simplified finite element model based on the technical parameters of an actual two cross roll straightening machine, was developed to simulate the complex straightening process. Then a dynamic simulation was carried out using ANSYS LS-DYNA program. The result implied that the simplified finite element model was reasonable for simulate the two cross rolls straightening process, and can be obtained the radius of curvature of the roll profile with the tube’s straightness 2 mm/m.

Rip Current Velocity Structure in Drifter Trajectories and Numerical Simulations

NASA Astrophysics Data System (ADS)

Schmidt, W. E.; Slinn, D. N.

2008-12-01

Estimates of rip current velocity and cross-shore structure were made using surfzone drifters, bathymetric surveys, and rectified video images. Over 60 rip current trajectories were observed during a three year period at a Southern California beach in July 2000, 2001, and 2002. Incident wave heights (Hs) immediately offshore (~7 m depth) were obtained by initializing a refraction model with data from nearby directional wave buoys, and varied from 0.3 to 1.0 m. Tide levels varied over approximately 1 m and winds were light. Numerical simulations using the non-linear shallow water equations and modeled over measured bathymetry also produced similar flows and statistics. Time series of drifter position, sampled at 1 Hz, were first-differenced to produce velocity time series. Maximum observed velocities varied between 25 and 80 cm s-1, whereas model maximum velocities were lower by a factor 2 to 3. When velocity maxima were non-dimensionalized by respective trajectory mean velocity, both observed and modeled values varied between 1.5 and 3.5. Cross-shore location of rip current velocity maxima for both shore-normal and shore-oblique rip currents were strongly coincident with the surfzone edge (Xb), as determined by rectified video (observations) or breakpoint (model). Once outside of the surfzone, observed and modeled rip current velocities decreased to 10% of their peak values within 2 surfzone widths of the shoreline, a useful definition of rip current cross-shore extent.

Computational methods to predict railcar response to track cross-level variations

DOT National Transportation Integrated Search

1976-09-01

The rocking response of railroad freight cars to track cross-level variations is studied using: (1) a reduced complexity digital simulation model, and (2) a quasi-linear describing function analysis. The reduced complexity digital simulation model em...

Numerical simulation of tornadoes' meteorological conditions over Greece: A case study of tornadic activity over NW Peloponnese on March 25, 2009

NASA Astrophysics Data System (ADS)

Matsangouras, Ioannis T.; Nastos, Panagiotis T.; Pytharoulis, Ioannis

2014-05-01

Recent research revealed that NW Peloponnese, Greece is an area that favours pre-frontal tornadic incidence. This study presents the results of the synoptic analysis of the meteorological conditions during a tornado event over NW Peloponnese on March 25, 2009. Further, the role of topography in tornado genesis is examined. The tornado was formed approximately at 10:30 UTC, south-west of Vardas village, crossed the Nea Manolada and faded away at Lappas village, causing several damage. The length of its track was approximately 9-10 km and this tornado was characterized as F2 (Fujita scale) or T4-T5 in TORRO intensity scale. Synoptic analysis was based on ECMWF datasets, as well as on daily composite mean and anomaly of the geopotential heights at the middle and lower troposphere from NCEP/NCAR reanalysis. In addition, numerous datasets derived from weather observations and remote sensing were used in order to interpret better the examined extreme event. Finally, a numerical simulation was performed using the non-hydrostatic Weather Research and Forecasting model (WRF), initialized with ECMWF gridded analyses, with telescoping nested grids that allow the representation of atmospheric circulations ranging from the synoptic scale down to the meso-scale. In the numerical simulations the topography of the inner grid was modified by: a) 0% (actual topography) and b) -100% (without topography).

Formation mechanism of glyoxal-DNA adduct, a DNA cross-link precursor.

PubMed

Vilanova, B; Fernández, D; Casasnovas, R; Pomar, A M; Alvarez-Idaboy, J R; Hernández-Haro, N; Grand, A; Adrover, M; Donoso, J; Frau, J; Muñoz, F; Ortega-Castro, J

2017-05-01

DNA nucleobases undergo non-enzymatic glycation to nucleobase adducts which can play important roles in vivo. In this work, we conducted a comprehensive experimental and theoretical kinetic study of the mechanisms of formation of glyoxal-guanine adducts over a wide pH range in order to elucidate the molecular basis for the glycation process. Also, we performed molecular dynamics simulations to investigate how open or cyclic glyoxal-guanine adducts can cause structural changes in an oligonucleotide model. A thermodynamic study of other glycating agents including methylglyoxal, acrolein, crotonaldehyde, 4-hydroxynonenal and 3-deoxyglucosone revealed that, at neutral pH, cyclic adducts were more stable than open adducts; at basic pH, however, the open adducts of 3-deoxyglucosone, methylglyoxal and glyoxal were more stable than their cyclic counterparts. This result can be ascribed to the ability of the adducts to cross-link DNA. The new insights may contribute to improve our understanding of the connection between glycation and DNA cross-linking. Copyright © 2017 Elsevier B.V. All rights reserved.

Prediction, Refinement and Persistency of Transmembrane Helix Dimers in Lipid Bilayers using Implicit and Explicit Solvent/Lipid Representations: Microsecond Molecular Dynamics Simulations of ErbB1/B2 and EphA1

PubMed Central

Zhang, Liqun; Sodt, Alexander J.; Venable, Richard M.; Pastor, Richard W.; Buck, Matthias

2012-01-01

All-atom simulations are carried out on ErbB1/B2 and EphA1 transmembrane helix dimers in lipid bilayers starting from their solution/DMPC bicelle NMR structures. Over the course of microsecond trajectories, the structures remain in close proximity to the initial configuration and satisfy the great majority of experimental tertiary contact restraints. These results further validate CHARMM protein/lipid force fields and simulation protocols on Anton. Separately, dimer conformations are generated using replica exchange in conjunction with an implicit solvent and lipid representation. The implicit model requires further improvement, and this study investigates whether lengthy all-atom molecular dynamics simulations can alleviate the shortcomings of the initial conditions. The simulations correct many of the deficiencies. For example excessive helix twisting is eliminated over a period of hundreds of nanoseconds. The helix tilt, crossing angles and dimer contacts approximate those of the NMR derived structure, although the detailed contact surface remains off-set for one of two helices in both systems. Hence, even microsecond simulations are not long enough for extensive helix rotations. The alternate structures can be rationalized with reference to interaction motifs and may represent still sought after receptor states that are important in ErbB1/B2 and EphA1 signaling. PMID:23042146

Cognitive-Motor Interference in an Ecologically Valid Street Crossing Scenario.

PubMed

Janouch, Christin; Drescher, Uwe; Wechsler, Konstantin; Haeger, Mathias; Bock, Otmar; Voelcker-Rehage, Claudia

2018-01-01

Laboratory-based research revealed that gait involves higher cognitive processes, leading to performance impairments when executed with a concurrent loading task. Deficits are especially pronounced in older adults. Theoretical approaches like the multiple resource model highlight the role of task similarity and associated attention distribution problems. It has been shown that in cases where these distribution problems are perceived relevant to participant's risk of falls, older adults prioritize gait and posture over the concurrent loading task. Here we investigate whether findings on task similarity and task prioritization can be transferred to an ecologically valid scenario. Sixty-three younger adults (20-30 years of age) and 61 older adults (65-75 years of age) participated in a virtual street crossing simulation. The participants' task was to identify suitable gaps that would allow them to cross a simulated two way street safely. Therefore, participants walked on a manual treadmill that transferred their forward motion to forward displacements in a virtual city. The task was presented as a single task (crossing only) and as a multitask. In the multitask condition participants were asked, among others, to type in three digit numbers that were presented either visually or auditorily. We found that for both age groups, street crossing as well as typing performance suffered under multitasking conditions. Impairments were especially pronounced for older adults (e.g., longer crossing initiation phase, more missed opportunities). However, younger and older adults did not differ in the speed and success rate of crossing. Further, deficits were stronger in the visual compared to the auditory task modality for most parameters. Our findings conform to earlier studies that found an age-related decline in multitasking performance in less realistic scenarios. However, task similarity effects were inconsistent and question the validity of the multiple resource model within ecologically valid scenarios.

Excitation of vibrational quanta in furfural by intermediate-energy electrons

NASA Astrophysics Data System (ADS)

Jones, D. B.; Neves, R. F. C.; Lopes, M. C. A.; da Costa, R. F.; Varella, M. T. do N.; Bettega, M. H. F.; Lima, M. A. P.; García, G.; Blanco, F.; Brunger, M. J.

2015-12-01

We report cross sections for electron-impact excitation of vibrational quanta in furfural, at intermediate incident electron energies (20, 30, and 40 eV). The present differential cross sections are measured over the scattered electron angular range 10°-90°, with corresponding integral cross sections subsequently being determined. Furfural is a viable plant-derived alternative to petrochemicals, being produced via low-temperature plasma treatment of biomass. Current yields, however, need to be significantly improved, possibly through modelling, with the present cross sections being an important component of such simulations. To the best of our knowledge, there are no other cross sections for vibrational excitation of furfural available in the literature, so the present data are valuable for this important molecule.

The Effect of a Simulated Commercial Flight Environment with Hypoxia and Low Humidity on Clotting, Platelet, and Endothelial Function in Participants with Type 2 Diabetes - A Cross-over Study.

PubMed

Konya, Judit; Al Qaissi, Ahmed; Sathyapalan, Thozhukat; Ajjan, Ramzi; Madden, Leigh; Naseem, Khalid M; Garrett, Andrew Thomas; Kilpatrick, Eric; Atkin, Stephen L

2018-01-01

To determine if clotting, platelet, and endothelial function were affected by simulated short-haul commercial air flight conditions (SF) in participants with type 2 diabetes (T2DM) compared to controls. 10 participants with T2DM (7 females, 3 males) and 10 controls (3 females, 7 males) completed the study. Participants were randomized to either spend 2 h in an environmental chamber at sea level conditions (temperature: 23°C, oxygen concentration 21%, humidity 45%), or subject to a simulated 2-h simulated flight (SF: temperature: 23°C, oxygen concentration 15%, humidity 15%), and crossed over 7 days later. Main outcome measures: clot formation and clot lysis parameters, functional platelet activation markers, and endothelial function measured by reactive hyperemia index (RHI) by EndoPAT and serum microparticles. Comparing baseline with SF conditions, clot maximal absorption was increased in controls (0.375 ± 0.05 vs. 0.39 ± 0.05, p  < 0.05) and participants with T2DM (0.378 ± 0.089 vs. 0.397 ± 0.089, p  < 0.01), while increased basal platelet activation for both fibrinogen binding and P-selectin expression ( p  < 0.05) was seen in participants with T2DM. Parameters of clot formation and clot lysis, stimulated platelet function (stimulated platelet response to ADP and sensitivity to prostacyclin), and endothelial function were unchanged. While SF resulted in the potential of denser clot formation with enhanced basal platelet activation in T2DM, the dynamic clotting, platelet, and endothelial markers were not affected, suggesting that short-haul commercial flying adds no additional hazard for venous thromboembolism for participants with T2DM compared to controls.

Modeling wet deposition of acid substances over the PRD region in China

NASA Astrophysics Data System (ADS)

Lu, Xingcheng; Fung, Jimmy Chi Hung; Wu, Dongwei

2015-12-01

The Pearl River Delta (PRD) region in southern China has suffered heavily from acid rain in the last 10 years due to the anthropogenic emission of sulfur dioxide and nitrogen dioxide. Several measurement-based studies about this issue have been conducted to analyze the chemical composition of precipitation in this area. However, no detailed, high resolution numerical simulation regarding this topic has ever been done in this region. In this study, the WRF-SMOKE-CMAQ system was applied to simulate the wet deposition of acid substances (SO42- and NO3-) in the PRD region from 2009 to 2011 with a resolution of 3 km. The simulation output agreed well with the observation data. Our results showed that Guangzhou was the city most affected by acid rain in this region. The ratio of non-sea-salt sulfate to nitrate indicated that the acid rain in this region belonged to the sulfate-nitrate mixed type. The source apportionment result suggests that point source and super regional source are the ones that contribute the pollutants most in the rain water over PRD Region. The sulfate and nitrate input to some reservoirs via wet deposition was also estimated based on the model simulation. Our results suggest that further cross-city cooperation and emission reduction are needed to further curb acid rain in this region.

Social context modulates cognitive markers in Obsessive-Compulsive Disorder.

PubMed

Santamaría-García, Hernando; Soriano-Mas, Carles; Burgaleta, Miguel; Ayneto, Alba; Alonso, Pino; Menchón, José M; Cardoner, Narcis; Sebastián-Gallés, Nuria

2017-08-03

Error monitoring, cognitive control and motor inhibition control are proposed as cognitive alterations disrupted in obsessive-compulsive disorder (OCD). OCD has also been associated with an increased sensitivity to social evaluations. The effect of a social simulation over electrophysiological indices of cognitive alterations in OCD was examined. A case-control cross-sectional study measuring event-related potentials (ERP) for error monitoring (Error-Related Negativity), cognitive control (N2) and motor control (LRP) was conducted. We analyzed twenty OCD patients and twenty control participants. ERP were recorded during a social game consisting of a visual discrimination task, which was performed in the presence of a simulated superior or an inferior player. Significant social effects (different ERP amplitudes in Superior vs. Inferior player conditions) were found for OCD patients, but not for controls, in all ERP components. Performing the task against a simulated inferior player reduced abnormal ERP responses in OCD to levels observed in controls. The hierarchy-induced ERP effects were accompanied effects over reaction times in OCD patients. Social context modulates signatures of abnormal cognitive functioning in OCD, therefore experiencing a social superiority position impacts over cognitive processes in OCD such as error monitoring mechanisms. These results open the door for the research of new therapeutic choices.

Thermal conductivity of cross-linked polyethylene from molecular dynamics simulation

NASA Astrophysics Data System (ADS)

Xiong, Xue; Yang, Ming; Liu, Changlin; Li, Xiaobo; Tang, Dawei

2017-07-01

The thermal conductivity of cross-linked bulk polyethylene is studied using molecular dynamics simulation. The atomic structure of the cross-linked polyethylene (PEX) is generated through simulated bond formation using LAMMPS. The thermal conductivity of PEX is studied with different degrees of crosslinking, chain length, and tensile strain. Generally, the thermal conductivity increases with the increasing degree of crosslinking. When the length of the primitive chain increases, the thermal conductivity increases linearly. When the polymer is stretched along one direction, the thermal conductivity increases in the stretched direction and decreases in the direction perpendicular to it. However, the thermal conductivity varies slightly when the polymer is stretched in three directions simultaneously.

Effect of caffeine on cycling time-trial performance in the heat.

PubMed

Pitchford, Nathan W; Fell, James W; Leveritt, Michael D; Desbrow, Ben; Shing, Cecilia M

2014-07-01

The purpose of this investigation was to determine whether a moderate dose of caffeine would improve a laboratory simulated cycling time-trial in the heat. Nine well-trained male subjects (VO2max 64.4±6.8mLmin(-1)kg(-1), peak power output 378±40W) completed one familiarisation and two experimental laboratory simulated cycling time-trials in environmental conditions of 35°C and 25% RH 90min after consuming either caffeine (3mgkg(-1) BW) or placebo, in a double blind, cross-over study. Time-trial performance was faster in the caffeine trial compared with the placebo trial (mean±SD, 3806±359s versus 4079±333s, p=0.06, 90%CI 42-500s, 86% likelihood of benefit, d=-0.79). Caffeine ingestion was associated with small to moderate increases in average heart rate (p=0.178, d=0.39), VO2 (p=0.154, d=0.45), respiratory exchange ratio (p=0.292, d=0.35) and core temperature (p=0.616, d=0.22) when compared to placebo, however, these were not statistically significant. Average RPE during the caffeine supplemented time-trial was not significantly different from placebo (p=0.41, d=-0.13). Caffeine supplementation at 3mgkg(-1) BW resulted in a worthwhile improvement in cycling time-trial performance in the heat. Double-blind cross-over study. Copyright © 2013 Sports Medicine Australia. Published by Elsevier Ltd. All rights reserved.

Development of a cross-section based stream package for MODFLOW

NASA Astrophysics Data System (ADS)

Ou, G.; Chen, X.; Irmak, A.

2012-12-01

Accurate simulation of stream-aquifer interactions for wide rivers using the streamflow routing package in MODFLOW is very challenging. To better represent a wide river spanning over multiple model grid cells, a Cross-Section based streamflow Routing (CSR) package is developed and incorporated into MODFLOW to simulate the interaction between streams and aquifers. In the CSR package, a stream segment is represented as a four-point polygon instead of a polyline which is traditionally used in streamflow routing simulation. Each stream segment is composed of upstream and downstream cross-sections. A cross-section consists of a number of streambed points possessing coordinates, streambed thicknesses and streambed hydraulic conductivities to describe the streambed geometry and hydraulic properties. The left and right end points are used to determine the locations of the stream segments. According to the cross-section geometry and hydraulic properties, CSR calculates the new stream stage at the cross-section using the Brent's method to solve the Manning's Equation. A module is developed to automatically compute the area of the stream segment polygon on each intersected MODFLOW grid cell as the upstream and downstream stages change. The stream stage and streambed hydraulic properties of model grids are interpolated based on the streambed points. Streambed leakage is computed as a function of streambed conductance and difference between the groundwater level and stream stage. The Muskingum-Cunge flow routing scheme with variable parameters is used to simulate the streamflow as the groundwater (discharge or recharge) contributes as lateral flows. An example is used to illustrate the capabilities of the CSR package. The result shows that the CSR is applicable to describing the spatial and temporal variation in the interaction between streams and aquifers. The input data become simple due to that the internal program automatically interpolates the cross-section data to each model grid cell.

Determination of Vertical Borehole and Geological Formation Properties using the Crossed Contour Method

PubMed Central

Leyde, Brian P.; Klein, Sanford A; Nellis, Gregory F.; Skye, Harrison

2017-01-01

This paper presents a new method called the Crossed Contour Method for determining the effective properties (borehole radius and ground thermal conductivity) of a vertical ground-coupled heat exchanger. The borehole radius is used as a proxy for the overall borehole thermal resistance. The method has been applied to both simulated and experimental borehole Thermal Response Test (TRT) data using the Duct Storage vertical ground heat exchanger model implemented in the TRansient SYstems Simulation software (TRNSYS). The Crossed Contour Method generates a parametric grid of simulated TRT data for different combinations of borehole radius and ground thermal conductivity in a series of time windows. The error between the average of the simulated and experimental bore field inlet and outlet temperatures is calculated for each set of borehole properties within each time window. Using these data, contours of the minimum error are constructed in the parameter space of borehole radius and ground thermal conductivity. When all of the minimum error contours for each time window are superimposed, the point where the contours cross (intersect) identifies the effective borehole properties for the model that most closely represents the experimental data in every time window and thus over the entire length of the experimental data set. The computed borehole properties are compared with results from existing model inversion methods including the Ground Property Measurement (GPM) software developed by Oak Ridge National Laboratory, and the Line Source Model. PMID:28785125

Hybrid LES/RANS Simulation of Transverse Sonic Injection into a Mach 2 Flow

NASA Technical Reports Server (NTRS)

Boles, John A.; Edwards, Jack R.; Baurle, Robert A.

2008-01-01

A computational study of transverse sonic injection of air and helium into a Mach 1.98 cross-flow is presented. A hybrid large-eddy simulation / Reynolds-averaged Navier-Stokes (LES/RANS) turbulence model is used, with the two-equation Menter baseline (Menter-BSL) closure for the RANS part of the flow and a Smagorinsky-type model for the LES part of the flow. A time-dependent blending function, dependent on modeled turbulence variables, is used to shift the closure from RANS to LES. Turbulent structures are initiated and sustained through the use of a recycling / rescaling technique. Two higher-order discretizations, the Piecewise Parabolic Method (PPM) of Colella and Woodward, and the SONIC-A ENO scheme of Suresh and Huyhn are used in the study. The results using the hybrid model show reasonably good agreement with time-averaged Mie scattering data and with experimental surface pressure distributions, even though the penetration of the jet into the cross-flow is slightly over-predicted. The LES/RANS results are used to examine the validity of commonly-used assumptions of constant Schmidt and Prandtl numbers in the intense mixing zone downstream of the injection location.

Testing cross-phenotype effects of rare variants in longitudinal studies of complex traits.

PubMed

Rudra, Pratyaydipta; Broadaway, K Alaine; Ware, Erin B; Jhun, Min A; Bielak, Lawrence F; Zhao, Wei; Smith, Jennifer A; Peyser, Patricia A; Kardia, Sharon L R; Epstein, Michael P; Ghosh, Debashis

2018-06-01

Many gene mapping studies of complex traits have identified genes or variants that influence multiple phenotypes. With the advent of next-generation sequencing technology, there has been substantial interest in identifying rare variants in genes that possess cross-phenotype effects. In the presence of such effects, modeling both the phenotypes and rare variants collectively using multivariate models can achieve higher statistical power compared to univariate methods that either model each phenotype separately or perform separate tests for each variant. Several studies collect phenotypic data over time and using such longitudinal data can further increase the power to detect genetic associations. Although rare-variant approaches exist for testing cross-phenotype effects at a single time point, there is no analogous method for performing such analyses using longitudinal outcomes. In order to fill this important gap, we propose an extension of Gene Association with Multiple Traits (GAMuT) test, a method for cross-phenotype analysis of rare variants using a framework based on the distance covariance. The approach allows for both binary and continuous phenotypes and can also adjust for covariates. Our simple adjustment to the GAMuT test allows it to handle longitudinal data and to gain power by exploiting temporal correlation. The approach is computationally efficient and applicable on a genome-wide scale due to the use of a closed-form test whose significance can be evaluated analytically. We use simulated data to demonstrate that our method has favorable power over competing approaches and also apply our approach to exome chip data from the Genetic Epidemiology Network of Arteriopathy. © 2018 WILEY PERIODICALS, INC.

Empirical evaluation of data normalization methods for molecular classification.

PubMed

Huang, Huei-Chung; Qin, Li-Xuan

2018-01-01

Data artifacts due to variations in experimental handling are ubiquitous in microarray studies, and they can lead to biased and irreproducible findings. A popular approach to correct for such artifacts is through post hoc data adjustment such as data normalization. Statistical methods for data normalization have been developed and evaluated primarily for the discovery of individual molecular biomarkers. Their performance has rarely been studied for the development of multi-marker molecular classifiers-an increasingly important application of microarrays in the era of personalized medicine. In this study, we set out to evaluate the performance of three commonly used methods for data normalization in the context of molecular classification, using extensive simulations based on re-sampling from a unique pair of microRNA microarray datasets for the same set of samples. The data and code for our simulations are freely available as R packages at GitHub. In the presence of confounding handling effects, all three normalization methods tended to improve the accuracy of the classifier when evaluated in an independent test data. The level of improvement and the relative performance among the normalization methods depended on the relative level of molecular signal, the distributional pattern of handling effects (e.g., location shift vs scale change), and the statistical method used for building the classifier. In addition, cross-validation was associated with biased estimation of classification accuracy in the over-optimistic direction for all three normalization methods. Normalization may improve the accuracy of molecular classification for data with confounding handling effects; however, it cannot circumvent the over-optimistic findings associated with cross-validation for assessing classification accuracy.

Ray tracing study of rising tone EMIC-triggered emissions

NASA Astrophysics Data System (ADS)

Hanzelka, Miroslav; Santolík, Ondřej; Grison, Benjamin; Cornilleau-Wehrlin, Nicole

2017-04-01

ElectroMagnetic Ion Cyclotron (EMIC) triggered emissions have been subject of extensive theoretical and experimental research in last years. These emissions are characterized by high coherence values and a frequency range of 0.5 - 2.0 Hz, close to local helium gyrofrequency. We perform ray tracing case studies of rising tone EMIC-triggered emissions observed by the Cluster spacecraft in both nightside and dayside regions off the equatorial plane. By comparison of simulated and measured wave properties, namely wave vector orientation, group velocity, dispersion and ellipticity of polarization, we determine possible source locations. Diffusive equilibrium density model and other, semi-empirical models are used with ion composition inferred from cross-over frequencies. Ray tracing simulations are done in cold plasma approximation with inclusion of Landau and cyclotron damping. Various widths, locations and profiles of plasmapause are tested.

Comparison of forcing functions in magnetohydrodynamics

NASA Astrophysics Data System (ADS)

McKay, Mairi E.; Linkmann, Moritz; Clark, Daniel; Chalupa, Adam A.; Berera, Arjun

2017-11-01

Results are presented of direct numerical simulations of incompressible, homogeneous magnetohydrodynamic turbulence without a mean magnetic field, subject to different mechanical forcing functions commonly used in the literature. Specifically, the forces are negative damping (which uses the large-scale velocity field as a forcing function), a nonhelical random force, and a nonhelical static sinusoidal force (analogous to helical ABC forcing). The time evolution of the three ideal invariants (energy, magnetic helicity, and cross helicity), the time-averaged energy spectra, the energy ratios, and the dissipation ratios are examined. All three forcing functions produce qualitatively similar steady states with regard to the time evolution of the energy and magnetic helicity. However, differences in the cross-helicity evolution are observed, particularly in the case of the static sinusoidal method of energy injection. Indeed, an ensemble of sinusoidally forced simulations with identical parameters shows significant variations in the cross helicity over long time periods, casting some doubt on the validity of the principle of ergodicity in systems in which the injection of helicity cannot be controlled. Cross helicity can unexpectedly enter the system through the forcing function and must be carefully monitored.

Evaluating a Cross-Continent EU Simulation

ERIC Educational Resources Information Center

Jones, Rebecca

2008-01-01

Assessment of learning outcomes and evaluation of teaching methods are necessary in order to ensure that students are learning the lessons that faculty believe they are conveying. Quantitative data on the effectiveness of various pedagogical methods allows faculty to make adjustments to classes over time. Regular assessment of student learning…

Chest Compression With Personal Protective Equipment During Cardiopulmonary Resuscitation: A Randomized Crossover Simulation Study.

PubMed

Chen, Jie; Lu, Kai-Zhi; Yi, Bin; Chen, Yan

2016-04-01

Following a chemical, biological, radiation, and nuclear incident, prompt cardiopulmonary resuscitation (CPR) procedure is essential for patients who suffer cardiac arrest. But CPR when wearing personal protection equipment (PPE) before decontamination becomes a challenge for healthcare workers (HCW). Although previous studies have assessed the impact of PPE on airway management, there is little research available regarding the quality of chest compression (CC) when wearing PPE.A present randomized cross-over simulation study was designed to evaluate the effect of PPE on CC performance using mannequins.The study was set in one university medical center in the China.Forty anesthesia residents participated in this randomized cross-over study.Each participant performed 2 min of CC on a manikin with and without PPE, respectively. Participants were randomized into 2 groups that either performed CC with PPE first, followed by a trial without PPE after a 180-min rest, or vice versa.CPR recording technology was used to objectively quantify the quality of CC. Additionally, participants' physiological parameters and subjective fatigue score values were recorded.With the use of PPE, a significant decrease of the percentage of effective compressions (41.3 ± 17.1% with PPE vs 67.5 ± 15.6% without PPE, P < 0.001) and the percentage of adequate compressions (67.7 ± 18.9% with PPE vs 80.7 ± 15.5% without PPE, P < 0.001) were observed. Furthermore, the increases in heart rate, mean arterial pressure, and subjective fatigue score values were more obvious with the use of PPE (all P < 0.01).We found significant deterioration of CC performance in HCW with the use of a level-C PPE, which may be a disadvantage for enhancing survival of cardiac arrest.

Pilot age and expertise predict flight simulator performance

PubMed Central

Kennedy, Quinn; Noda, Art; Yesavage, Jerome A.

2010-01-01

Background Expert knowledge may compensate for age-related declines in basic cognitive and sensory-motor abilities in some skill domains. We investigated the influence of age and aviation expertise (indexed by Federal Aviation Administration pilot ratings) on longitudinal flight simulator performance. Methods Over a 3-year period, 118 general aviation pilots aged 40 to 69 years were tested annually, in which their flight performance was scored in terms of 1) executing air-traffic controller communications; 2) traffic avoidance; 3) scanning cockpit instruments; 4) executing an approach to landing; and 5) a flight summary score. Results More expert pilots had better flight summary scores at baseline and showed less decline over time. Secondary analyses revealed that expertise effects were most evident in the accuracy of executing aviation communications, the measure on which performance declined most sharply over time. Regarding age, even though older pilots initially performed worse than younger pilots, over time older pilots showed less decline in flight summary scores than younger pilots. Secondary analyses revealed that the oldest pilots did well over time because their traffic avoidance performance improved more vs younger pilots. Conclusions These longitudinal findings support previous cross-sectional studies in aviation as well as non-aviation domains, which demonstrated the advantageous effect of prior experience and specialized expertise on older adults’ skilled cognitive performances. PMID:17325270

Optimization of linear and branched alkane interactions with water to simulate hydrophobic hydration

NASA Astrophysics Data System (ADS)

Ashbaugh, Henry S.; Liu, Lixin; Surampudi, Lalitanand N.

2011-08-01

Previous studies of simple gas hydration have demonstrated that the accuracy of molecular simulations at capturing the thermodynamic signatures of hydrophobic hydration is linked both to the fidelity of the water model at replicating the experimental liquid density at ambient pressure and an accounting of polarization interactions between the solute and water. We extend those studies to examine alkane hydration using the transferable potentials for phase equilibria united-atom model for linear and branched alkanes, developed to reproduce alkane phase behavior, and the TIP4P/2005 model for water, which provides one of the best descriptions of liquid water for the available fixed-point charge models. Alkane site/water oxygen Lennard-Jones cross interactions were optimized to reproduce the experimental alkane hydration free energies over a range of temperatures. The optimized model reproduces the hydration free energies of the fitted alkanes with a root mean square difference between simulation and experiment of 0.06 kcal/mol over a wide temperature range, compared to 0.44 kcal/mol for the parent model. The optimized model accurately reproduces the temperature dependence of hydrophobic hydration, as characterized by the hydration enthalpies, entropies, and heat capacities, as well as the pressure response, as characterized by partial molar volumes.

Average absorption cross-section of the human body measured at 1-12 GHz in a reverberant chamber: results of a human volunteer study

NASA Astrophysics Data System (ADS)

Flintoft, I. D.; Robinson, M. P.; Melia, G. C. R.; Marvin, A. C.; Dawson, J. F.

2014-07-01

The electromagnetic absorption cross-section (ACS) averaged over polarization and angle-of-incidence of 60 ungrounded adult subjects was measured at microwave frequencies of 1-12 GHz in a reverberation chamber. Average ACS is important in non-ionizing dosimetry and exposure studies, and is closely related to the whole-body averaged specific absorption rate (WBSAR). The average ACS was measured with a statistical uncertainty of less than 3% and high frequency resolution for individuals with a range of body shapes and sizes allowing the statistical distribution of WBSAR over a real population with individual internal and external morphologies to be determined. The average ACS of all subjects was found to vary from 0.15 to 0.4 m2 for an individual subject it falls with frequency over 1-6 GHz, and then rises slowly over the 6-12 GHz range in which few other studies have been conducted. Average ACS and WBSAR are then used as a surrogate for worst-case ACS/WBSAR, in order to study their variability across a real population compared to literature results from simulations using numerical phantoms with a limited range of anatomies. Correlations with body morphological parameters such as height, mass and waist circumference have been investigated: the strongest correlation is with body surface area (BSA) at all frequencies above 1 GHz, however direct proportionality to BSA is not established until above 5 GHz. When the average ACS is normalized to the BSA, the resulting absorption efficiency shows a negative correlation with the estimated thickness of subcutaneous body fat. Surrogate models and statistical analysis of the measurement data are presented and compared to similar models from the literature. The overall dispersion of measured average WBSAR of the sample of the UK population studied is consistent with the dispersion of simulated worst-case WBSAR across multiple numerical phantom families. The statistical results obtained allow the calibration of human exposure assessments made with particular phantoms to a population with a range of individual morphologies.

Average absorption cross-section of the human body measured at 1-12 GHz in a reverberant chamber: results of a human volunteer study.

PubMed

Flintoft, I D; Robinson, M P; Melia, G C R; Marvin, A C; Dawson, J F

2014-07-07

The electromagnetic absorption cross-section (ACS) averaged over polarization and angle-of-incidence of 60 ungrounded adult subjects was measured at microwave frequencies of 1-12 GHz in a reverberation chamber. Average ACS is important in non-ionizing dosimetry and exposure studies, and is closely related to the whole-body averaged specific absorption rate (WBSAR). The average ACS was measured with a statistical uncertainty of less than 3% and high frequency resolution for individuals with a range of body shapes and sizes allowing the statistical distribution of WBSAR over a real population with individual internal and external morphologies to be determined. The average ACS of all subjects was found to vary from 0.15 to 0.4 m(2); for an individual subject it falls with frequency over 1-6 GHz, and then rises slowly over the 6-12 GHz range in which few other studies have been conducted. Average ACS and WBSAR are then used as a surrogate for worst-case ACS/WBSAR, in order to study their variability across a real population compared to literature results from simulations using numerical phantoms with a limited range of anatomies. Correlations with body morphological parameters such as height, mass and waist circumference have been investigated: the strongest correlation is with body surface area (BSA) at all frequencies above 1 GHz, however direct proportionality to BSA is not established until above 5 GHz. When the average ACS is normalized to the BSA, the resulting absorption efficiency shows a negative correlation with the estimated thickness of subcutaneous body fat. Surrogate models and statistical analysis of the measurement data are presented and compared to similar models from the literature. The overall dispersion of measured average WBSAR of the sample of the UK population studied is consistent with the dispersion of simulated worst-case WBSAR across multiple numerical phantom families. The statistical results obtained allow the calibration of human exposure assessments made with particular phantoms to a population with a range of individual morphologies.

Optimizing disk registration algorithms for nanobeam electron diffraction strain mapping

DOE PAGES

Pekin, Thomas C.; Gammer, Christoph; Ciston, Jim; ...

2017-01-28

Scanning nanobeam electron diffraction strain mapping is a technique by which the positions of diffracted disks sampled at the nanoscale over a crystalline sample can be used to reconstruct a strain map over a large area. However, it is important that the disk positions are measured accurately, as their positions relative to a reference are directly used to calculate strain. Here in this study, we compare several correlation methods using both simulated and experimental data in order to directly probe susceptibility to measurement error due to non-uniform diffracted disk illumination structure. We found that prefiltering the diffraction patterns with amore » Sobel filter before performing cross correlation or performing a square-root magnitude weighted phase correlation returned the best results when inner disk structure was present. Lastly, we have tested these methods both on simulated datasets, and experimental data from unstrained silicon as well as a twin grain boundary in 304 stainless steel.« less

Dynamics of cross-bridge cycling, ATP hydrolysis, force generation, and deformation in cardiac muscle

PubMed Central

Tewari, Shivendra G.; Bugenhagen, Scott M.; Palmer, Bradley M.; Beard, Daniel A.

2015-01-01

Despite extensive study over the past six decades the coupling of chemical reaction and mechanical processes in muscle dynamics is not well understood. We lack a theoretical description of how chemical processes (metabolite binding, ATP hydrolysis) influence and are influenced by mechanical processes (deformation and force generation). To address this need, a mathematical model of the muscle cross-bridge (XB) cycle based on Huxley’s sliding filament theory is developed that explicitly accounts for the chemical transformation events and the influence of strain on state transitions. The model is identified based on elastic and viscous moduli data from mouse and rat myocardial strips over a range of perturbation frequencies, and MgATP and inorganic phosphate (Pi) concentrations. Simulations of the identified model reproduce the observed effects of MgATP and MgADP on the rate of force development. Furthermore, simulations reveal that the rate of force re-development measured in slack-restretch experiments is not directly proportional to the rate of XB cycling. For these experiments, the model predicts that the observed increase in the rate of force generation with increased Pi concentration is due to inhibition of cycle turnover by Pi. Finally, the model captures the observed phenomena of force yielding suggesting that it is a result of rapid detachment of stretched attached myosin heads. PMID:25681584

Evaluating the design of satellite scanning radiometers for earth radiation budget measurements with system simulations. Part 1: Instantaneous estimates

NASA Technical Reports Server (NTRS)

Stowe, Larry; Ardanuy, Philip; Hucek, Richard; Abel, Peter; Jacobowitz, Herbert

1991-01-01

A set of system simulations was performed to evaluate candidate scanner configurations to fly as a part of the Earth Radiation Budget Instrument (ERBI) on the polar platforms during the 1990's. The simulation is considered of instantaneous sampling (without diurnal averaging) of the longwave and shortwave fluxes at the top of the atmosphere (TOA). After measurement and subsequent inversion to the TOA, the measured fluxes were compared to the reference fluxes for 2.5 deg lat/long resolution targets. The reference fluxes at this resolution are obtained by integrating over the 25 x 25 = 625 grid elements in each target. The differences between each of these two resultant spatially averaged sets of target measurements (errors) are taken and then statistically summarized. Five instruments are considered: (1) the Conically Scanning Radiometer (CSR); (2) the ERBE Cross Track Scanner; (3) the Nimbus-7 Biaxial Scanner; (4) the Clouds and Earth's Radiant Energy System Instrument (CERES-1); and (5) the Active Cavity Array (ACA). Identical studies of instantaneous error were completed for many days, two seasons, and several satellite equator crossing longitudes. The longwave flux errors were found to have the same space and time characteristics as for the shortwave fluxes, but the errors are only about 25 pct. of the shortwave errors.

Evolution of Precipitation Structure During the November DYNAMO MJO Event: Cloud-Resolving Model Intercomparison and Cross Validation Using Radar Observations

NASA Astrophysics Data System (ADS)

Li, Xiaowen; Janiga, Matthew A.; Wang, Shuguang; Tao, Wei-Kuo; Rowe, Angela; Xu, Weixin; Liu, Chuntao; Matsui, Toshihisa; Zhang, Chidong

2018-04-01

Evolution of precipitation structures are simulated and compared with radar observations for the November Madden-Julian Oscillation (MJO) event during the DYNAmics of the MJO (DYNAMO) field campaign. Three ground-based, ship-borne, and spaceborne precipitation radars and three cloud-resolving models (CRMs) driven by observed large-scale forcing are used to study precipitation structures at different locations over the central equatorial Indian Ocean. Convective strength is represented by 0-dBZ echo-top heights, and convective organization by contiguous 17-dBZ areas. The multi-radar and multi-model framework allows for more stringent model validations. The emphasis is on testing models' ability to simulate subtle differences observed at different radar sites when the MJO event passed through. The results show that CRMs forced by site-specific large-scale forcing can reproduce not only common features in cloud populations but also subtle variations observed by different radars. The comparisons also revealed common deficiencies in CRM simulations where they underestimate radar echo-top heights for the strongest convection within large, organized precipitation features. Cross validations with multiple radars and models also enable quantitative comparisons in CRM sensitivity studies using different large-scale forcing, microphysical schemes and parameters, resolutions, and domain sizes. In terms of radar echo-top height temporal variations, many model sensitivity tests have better correlations than radar/model comparisons, indicating robustness in model performance on this aspect. It is further shown that well-validated model simulations could be used to constrain uncertainties in observed echo-top heights when the low-resolution surveillance scanning strategy is used.

Molecular-dynamics simulation of mutual diffusion in nonideal liquid mixtures

NASA Astrophysics Data System (ADS)

Rowley, R. L.; Stoker, J. M.; Giles, N. F.

1991-05-01

The mutual-diffusion coefficients, D 12, of n-hexane, n-heptane, and n-octane in chloroform were modeled using equilibrium molecular-dynamics (MD) simulations of simple Lennard-Jones (LJ) fluids. Pure-component LJ parameters were obtained by comparison of simulations to experimental self-diffusion coefficients. While values of “effective” LJ parameters are not expected to simulate accurately diverse thermophysical properties over a wide range of conditions, it was recently shown that effective parameters obtained from pure self-diffusion coefficients can accurately model mutual diffusion in ideal, liquid mixtures. In this work, similar simulations are used to model diffusion in nonideal mixtures. The same combining rules used in the previous study for the cross-interaction parameters were found to be adequate to represent the composition dependence of D 12. The effect of alkane chain length on D 12 is also correctly predicted by the simulations. A commonly used assumption in empirical correlations of D 12, that its kinetic portion is a simple, compositional average of the intradiffusion coefficients, is inconsistent with the simulation results. In fact, the value of the kinetic portion of D 12 was often outside the range of values bracketed by the two intradiffusion coefficients for the nonideal system modeled here.

Characterization of Interactions between Surface Water and Near-Stream Groundwater along Fish Creek, Teton County, Wyoming, by Using Heat as a Tracer

USGS Publications Warehouse

Eddy-Miller, Cheryl A.; Wheeler, Jerrod D.; Essaid, Hedeff I.

2009-01-01

Fish Creek, a tributary of the Snake River, is about 25 river kilometers long and is located in Teton County in western Wyoming near the town of Wilson. Local residents began observing an increase in the growth of algae and aquatic plants in the stream during the last decade. Due to the known importance of groundwater to surface water in the area, the U.S. Geological Survey (USGS), in cooperation with the Teton Conservation District, conducted a study to characterize the interactions between surface water and near-stream groundwater along Fish Creek. The study has two main objectives: (1) develop an improved spatial and temporal understanding of water flow (fluxes) between surface water and groundwater, and (2) use a two-dimensional groundwater-flow and heat-transport model to interpret observed temperature and hydraulic-head distributions and to describe groundwater flow near Fish Creek. The study is intended to augment hydrologic information derived from previously published results of a seepage investigation on Fish Creek. Seepage measurements provide spatially averaged gains and losses over an entire reach for one point in time, whereas continuous temperature and water-level measurements provide continuous estimates of gain and loss at a specific location. Stage, water-level, and temperature data were collected from surface water and from piezometers completed in an alluvial aquifer at three cross sections on Fish Creek at Teton Village, Resor's Bridge, and Wilson from October 2004 to October 2006. The flow and energy (heat) transport model VS2DH was used to simulate flow through the streambed of Fish Creek at the Teton Village cross section from April 15 to October 14, 2006, (183 recharge periods) and at the Resor's Bridge and Wilson cross sections from June 6, 2005, to October 14, 2006 (496 recharge periods). A trial-and-error technique was used to determine the best match between simulated and measured data. These results were then used to calibrate the cross-sectional models and determine horizontal and vertical hydraulic conductivities. The fluxes of groundwater into the stream or fluxes of stream water into the alluvial aquifer were estimated by using the calibrated VS2DH model for each cross section. Results of the simulations indicated that surface water/groundwater interaction and hydraulic properties were different at the three cross sections. At the most upstream cross section, Teton Village, Fish Creek flowed intermittently and continually gained relatively large quantities of water from April through September. During other times of the year, the stream was dry near the cross section. Saturated hydraulic conductivity set at 1x10-4 m/s in both the horizontal and vertical directions resulted in the best match between simulated and measured temperatures. The Resor's Bridge cross section, about midway between the other two cross sections, was near the point where perennial flow begins. At this cross section, the stream gained water from groundwater during high flow in late spring and summer, was near equilibrium with groundwater during August and September, and lost water to groundwater during the remainder of the year. Horizontal hydraulic conductivity set at 5x10-5 m/s and vertical hydraulic conductivity set at 1x10-5 m/s resulted in the best match between simulated and measured temperatures. The Wilson cross section, the most downstream site, was at USGS streamflow-gaging station 13016450. This part of the stream is perennial and was almost always gaining a small volume of water from groundwater. Saturated hydraulic conductivity set at 1x10-4 m/s in the horizontal direction and at 5x10-6 m/s in the vertical direction resulted in the best match between simulated and measured temperatures. Quantitative values of the flux from groundwater into surface water were estimated by using VS2DH and ranged from 1.1 to 6.6 cubic meters per day (m3/d) at the Teton Village cross section, from -3.8 to 7.4 m3/d at t

Numerical simulations of an impinging liquid spray in a cross-flow

NASA Astrophysics Data System (ADS)

Gomatam, Sreekar; Vengadesan, S.; Chakravarthy, S. R.

2017-11-01

The characteristics of a liquid spray in a uniform cross-flow field are numerically simulated in this study. A hollow cone liquid spray is injected perpendicular to the air stream flowing through a rectangular duct under room temperature and pressure. An Eulerian-Lagrangian framework is adopted to simulate the spray in cross-flow phenomenon. The cross-flow velocity is varied from 6-12 m/s while the liquid injection pressure is varied from 0.3-0.6 MPa. The liquid droplets from the injected spray undergo breakup and/or coalescence further in the cross-flow. Moreover, the spray injected into the cross-flow impinges on the opposite wall resulting in the formation of a liquid film. This liquid film disintegrates further into discrete droplets because of the impingement of the droplets from the spray and the shear from the cross-flow. The overall distribution of the droplets in the cross-flow for varying conditions is studied in detail. The evolution of the liquid film with space and time for varying conditions is also investigated. Suitable sub-models are used to numerically model the droplet break-up, coalescence, liquid film formation and disintegration, splashing of the droplets on the film and subsequent formation of daughter droplets. Department of Applied Mechanics, Indian Inst of Tech-Madras.

Investigation of Microphysical Parameters within Winter and Summer Type Precipitation Events over Mountainous [Complex] Terrain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stalker, James R.; Bossert, James E.

1997-12-31

In this study we investigate complex terrain effects on precipitation with RAMS for both in winter and summer cases from a microphysical perspective. We consider a two dimensional east-west topographic cross section in New Mexico representative of the Jemez mountains on the west and the Sangre de Cristo mountains on the east. Located between these two ranges is the Rio Grande Valley. In these two dimensional experiments, variations in DSDs are considered to simulate total precipitation that closely duplicate observed precipitation.

Robust mode space approach for atomistic modeling of realistically large nanowire transistors

NASA Astrophysics Data System (ADS)

Huang, Jun Z.; Ilatikhameneh, Hesameddin; Povolotskyi, Michael; Klimeck, Gerhard

2018-01-01

Nanoelectronic transistors have reached 3D length scales in which the number of atoms is countable. Truly atomistic device representations are needed to capture the essential functionalities of the devices. Atomistic quantum transport simulations of realistically extended devices are, however, computationally very demanding. The widely used mode space (MS) approach can significantly reduce the numerical cost, but a good MS basis is usually very hard to obtain for atomistic full-band models. In this work, a robust and parallel algorithm is developed to optimize the MS basis for atomistic nanowires. This enables engineering-level, reliable tight binding non-equilibrium Green's function simulation of nanowire metal-oxide-semiconductor field-effect transistor (MOSFET) with a realistic cross section of 10 nm × 10 nm using a small computer cluster. This approach is applied to compare the performance of InGaAs and Si nanowire n-type MOSFETs (nMOSFETs) with various channel lengths and cross sections. Simulation results with full-band accuracy indicate that InGaAs nanowire nMOSFETs have no drive current advantage over their Si counterparts for cross sections up to about 10 nm × 10 nm.

Safety evaluation model of urban cross-river tunnel based on driving simulation.

PubMed

Ma, Yingqi; Lu, Linjun; Lu, Jian John

2017-09-01

Currently, Shanghai urban cross-river tunnels have three principal characteristics: increased traffic, a high accident rate and rapidly developing construction. Because of their complex geographic and hydrological characteristics, the alignment conditions in urban cross-river tunnels are more complicated than in highway tunnels, so a safety evaluation of urban cross-river tunnels is necessary to suggest follow-up construction and changes in operational management. A driving risk index (DRI) for urban cross-river tunnels was proposed in this study. An index system was also constructed, combining eight factors derived from the output of a driving simulator regarding three aspects of risk due to following, lateral accidents and driver workload. Analytic hierarchy process methods and expert marking and normalization processing were applied to construct a mathematical model for the DRI. The driving simulator was used to simulate 12 Shanghai urban cross-river tunnels and a relationship was obtained between the DRI for the tunnels and the corresponding accident rate (AR) via a regression analysis. The regression analysis results showed that the relationship between the DRI and the AR mapped to an exponential function with a high degree of fit. In the absence of detailed accident data, a safety evaluation model based on factors derived from a driving simulation can effectively assess the driving risk in urban cross-river tunnels constructed or in design.

Simulation of water-surface elevations for a hypothetical 100-year peak flow in Birch Creek at the Idaho National Engineering and Environmental Laboratory, Idaho

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berenbrock, C.; Kjelstrom, L.C.

1997-10-01

Delineation of areas at the Idaho National Engineering and Environmental Laboratory that would be inundated by a 100-year peak flow in Birch Creek is needed by the US Department of Energy to fulfill flood-plain regulatory requirements. Birch Creek flows southward about 40 miles through an alluvium-filled valley onto the northern part of the Idaho National Engineering and Environmental laboratory site on the eastern Snake River Plain. The lower 10-mile reach of Birch Creek that ends in Birch Creek Playa near several Idaho National Engineering and Environmental Laboratory facilities is of particular concern. Twenty-six channel cross sections were surveyed to developmore » and apply a hydraulic model to simulate water-surface elevations for a hypothetical 100-year peak flow in Birch Creek. Model simulation of the 100-year peak flow (700 cubic feet per second) in reaches upstream from State Highway 22 indicated that flow was confined within channels even when all flow was routed to one channel. Where the highway crosses Birch Creek, about 315 cubic feet per second of water was estimated to move downstream--115 cubic feet per second through a culvert and 200 cubic feet per second over the highway. Simulated water-surface elevation at this crossing was 0.8 foot higher than the elevation of the highway. The remaining 385 cubic feet per second flowed southwestward in a trench along the north side of the highway. Flow also was simulated with the culvert removed. The exact location of flood boundaries on Birch Creek could not be determined because of the highly braided channel and the many anthropogenic features (such as the trench, highway, and diversion channels) in the study area that affect flood hydraulics and flow. Because flood boundaries could not be located exactly, only a generalized flood-prone map was developed.« less

SWMF Global Magnetosphere Simulations of January 2005: Geomagnetic Indices and Cross-Polar Cap Potential

DOE PAGES

Haiducek, John D.; Welling, Daniel T.; Ganushkina, Natalia Y.; ...

2017-10-30

We simulated the entire month of January, 2005 using the Space Weather Modeling Framework (SWMF) with observed solar wind data as input. We conducted this simulation with and without an inner magnetosphere model, and tested two different grid resolutions. We evaluated the model's accuracy in predicting Kp, Sym-H, AL, and cross polar cap potential (CPCP). We find that the model does an excellent job of predicting the Sym-H index, with an RMSE of 17-18 nT. Kp is predicted well during storm-time conditions, but over-predicted during quiet times by a margin of 1 to 1.7 Kp units. AL is predicted reasonablymore » well on average, with an RMSE of 230-270 nT. However, the model reaches the largest negative AL values significantly less often than the observations. The model tended to over-predict CPCP, with RMSE values on the order of 46-48 kV. We found the results to be insensitive to grid resoution, with the exception of the rate of occurrence for strongly negative AL values. As a result, the use of the inner magnetosphere component, however, affected results significantly, with all quantities except CPCP improved notably when the inner magnetosphere model was on.« less

SWMF Global Magnetosphere Simulations of January 2005: Geomagnetic Indices and Cross-Polar Cap Potential

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haiducek, John D.; Welling, Daniel T.; Ganushkina, Natalia Y.

We simulated the entire month of January, 2005 using the Space Weather Modeling Framework (SWMF) with observed solar wind data as input. We conducted this simulation with and without an inner magnetosphere model, and tested two different grid resolutions. We evaluated the model's accuracy in predicting Kp, Sym-H, AL, and cross polar cap potential (CPCP). We find that the model does an excellent job of predicting the Sym-H index, with an RMSE of 17-18 nT. Kp is predicted well during storm-time conditions, but over-predicted during quiet times by a margin of 1 to 1.7 Kp units. AL is predicted reasonablymore » well on average, with an RMSE of 230-270 nT. However, the model reaches the largest negative AL values significantly less often than the observations. The model tended to over-predict CPCP, with RMSE values on the order of 46-48 kV. We found the results to be insensitive to grid resoution, with the exception of the rate of occurrence for strongly negative AL values. As a result, the use of the inner magnetosphere component, however, affected results significantly, with all quantities except CPCP improved notably when the inner magnetosphere model was on.« less

Distribution and radiative forcing of Asian dust and anthropogenic aerosols from East Asia simulated by SPRINTARS

NASA Astrophysics Data System (ADS)

Takemura, T.; Nakajima, T.; Uno, I.

2002-12-01

A three-dimensional aerosol transport-radiation model, SPRINTARS (Spectral Radiation-Transport Model for Aerosol Species), has been developed based on an atmospheric general circulation model of the Center for Climate System Research, University of Tokyo/National Institute for Environmental Studies, Japan to research the effects of aerosols on the climate system and atmospheric environment. SPRINTARS successfully simulates the long-range transport of the large-scale Asian dust storms from East Asia to North America by crossing the North Pacific Ocean in springtime 2001 and 2002. It is found from the calculated dust optical thickness that 10 to 20% of Asian dust around Japan reached North America. The simulation also reveals the importance of anthropogenic aerosols, which are carbonaceous and sulfate aerosols emitted from the industrialized areas in the East Asian continent, to air turbidity during the large-scale Asian dust storms. The simulated results are compared with a volume of observation data regarding the aerosol characteristics over East Asia in the spring of 2001 acquired by the intensive observation campaigns of ACE-Asia (Asian Pacific Regional Aerosol Characterization Experiment) and APEX (Asian Atmospheric Particulate Environmental Change Studies). The comparisons are carried out not only for aerosol concentrations but also for aerosol optical properties, such as optical thickness, Angstrom exponent which is a size index calculated by the log-slope exponent of the optical thickness between two wavelengths, and single scattering albedo. The consistence of Angstrom exponent between the simulation and observations means the reasonable simulation of the ratio of anthropogenic aerosols to Asian dust, which supports the suggestion by the simulation on the importance of anthropogenic aerosols to air turbidity during the large-scale Asian dust storms. SPRINTARS simultaneously calculates the aerosol direct and indirect radiative forcings. The direct radiative forcing of Asian dust at the tropopause is negative over ocean, on the other hand, positive over deserts, snow, and sea ice in the clear-sky condition. The simulation also shows that it depends not only on aerosol mass concentrations but also on the vertical profiles of aerosols and cloud water.

A cross-national study to objectively evaluate the quality of diverse simulation approaches for undergraduate nursing students.

PubMed

Kable, Ashley K; Levett-Jones, Tracy L; Arthur, Carol; Reid-Searl, Kerry; Humphreys, Melanie; Morris, Sara; Walsh, Pauline; Witton, Nicola J

2018-01-01

The aim of this paper is to report the results of a cross-national study that evaluated a range of simulation sessions using an observation schedule developed from evidence-based quality indicators. Observational data were collected from 17 simulation sessions conducted for undergraduate nursing students at three universities in Australia and the United Kingdom. The observation schedule contained 27 questions that rated simulation quality. Data were collected by direct observation and from video recordings of the simulation sessions. Results indicated that the highest quality scores were for provision of learning objectives prior to the simulation session (90%) and debriefing (72%). Student preparatiosn and orientation (67%) and perceived realism and fidelity (67%) were scored lower than other components of the simulation sessions. This observational study proved to be an effective strategy to identify areas of strength and those needing further development to improve simulation sessions. Copyright © 2017 Elsevier Ltd. All rights reserved.

A systematic examination of preoperative surgery warm-up routines.

PubMed

Pike, T W; Pathak, S; Mushtaq, F; Wilkie, R M; Mon-Williams, M; Lodge, J P A

2017-05-01

Recent evidence indicates that a preoperative warm-up is a potentially useful tool in facilitating performance. But what factors drive such improvements and how should a warm-up be implemented? In order to address these issues, we adopted a two-pronged approach: (1) we conducted a systematic review of the literature to identify existing studies utilising preoperative simulation techniques; (2) we performed task analysis to identify the constituent parts of effective warm-ups. We identified five randomised control trials, four randomised cross-over trials and four case series. The majority of these studies reviewed surgical performance following preoperative simulation relative to performance without simulation. Four studies reported outcome measures in real patients and the remainder reported simulated outcome measures. All but one of the studies found that preoperative simulation improves operative outcomes-but this improvement was not found across all measured parameters. While the reviewed studies had a number of methodological issues, the global data indicate that preoperative simulation has substantial potential to improve surgical performance. Analysis of the task characteristics of successful interventions indicated that the majority of these studies employed warm-ups that focused on the visual motor elements of surgery. However, there was no theoretical or empirical basis to inform the design of the intervention in any of these studies. There is an urgent need for a more rigorous approach to the development of "warm-up" routines if the potential value of preoperative simulation is to be understood and realised. We propose that such interventions need to be grounded in theory and empirical evidence on human motor performance.

Simulations in Cyber-Security: A Review of Cognitive Modeling of Network Attackers, Defenders, and Users.

PubMed

Veksler, Vladislav D; Buchler, Norbou; Hoffman, Blaine E; Cassenti, Daniel N; Sample, Char; Sugrim, Shridat

2018-01-01

Computational models of cognitive processes may be employed in cyber-security tools, experiments, and simulations to address human agency and effective decision-making in keeping computational networks secure. Cognitive modeling can addresses multi-disciplinary cyber-security challenges requiring cross-cutting approaches over the human and computational sciences such as the following: (a) adversarial reasoning and behavioral game theory to predict attacker subjective utilities and decision likelihood distributions, (b) human factors of cyber tools to address human system integration challenges, estimation of defender cognitive states, and opportunities for automation, (c) dynamic simulations involving attacker, defender, and user models to enhance studies of cyber epidemiology and cyber hygiene, and (d) training effectiveness research and training scenarios to address human cyber-security performance, maturation of cyber-security skill sets, and effective decision-making. Models may be initially constructed at the group-level based on mean tendencies of each subject's subgroup, based on known statistics such as specific skill proficiencies, demographic characteristics, and cultural factors. For more precise and accurate predictions, cognitive models may be fine-tuned to each individual attacker, defender, or user profile, and updated over time (based on recorded behavior) via techniques such as model tracing and dynamic parameter fitting.

Complex behaviour in complex terrain - Modelling bird migration in a high resolution wind field across mountainous terrain to simulate observed patterns.

PubMed

Aurbach, Annika; Schmid, Baptiste; Liechti, Felix; Chokani, Ndaona; Abhari, Reza

2018-06-03

Crossing of large ecological barriers, such as mountains, is in terms of energy considered to be a demanding and critical step during bird migration. Besides forming a geographical barrier, mountains have a profound impact on the resulting wind flow. We use a novel framework of mathematical models to investigate the influences of wind and topography on nocturnal passerine bird behaviour, and to assess the energy costs for different flight strategies for crossing the Jura Mountains. The mathematical models include three biological models of bird behaviour: i) wind drift compensation; ii) adaptation of flight height for favourable winds; and, iii) avoidance of obstacles (cross over and/or circumvention of an obstacle following a minimum energy expenditure strategy), which are assessed separately and in combination. Further, we use a mesoscale weather model for high-resolution predictions of the wind fields. We simulate the broad front nocturnal passerine migration for autumn nights with peak migration intensities. The bird densities retrieved from a weather radar are used as the initial intensities and to specify the vertical distributions of the simulated birds. It is shown that migration over complex terrain represents the most expensive flight option in terms of energy expenditure, and wind is seen to be the main factor that influences the energy expenditure in the bird's preferred flight direction. Further, the combined effects of wind and orography lead to a high concentration of migratory birds within the favourable wind conditions of the Swiss lowlands and north of the Jura Mountains. Copyright © 2018 Elsevier Ltd. All rights reserved.

Effect of reconstruction methods and x-ray tube current–time product on nodule detection in an anthropomorphic thorax phantom: A crossed-modality JAFROC observer study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thompson, J. D., E-mail: j.d.thompson@salford.ac.uk; Chakraborty, D. P.; Szczepura, K.

Purpose: To evaluate nodule detection in an anthropomorphic chest phantom in computed tomography (CT) images reconstructed with adaptive iterative dose reduction 3D (AIDR{sup 3D}) and filtered back projection (FBP) over a range of tube current–time product (mAs). Methods: Two phantoms were used in this study: (i) an anthropomorphic chest phantom was loaded with spherical simulated nodules of 5, 8, 10, and 12 mm in diameter and +100, −630, and −800 Hounsfield units electron density; this would generate CT images for the observer study; (ii) a whole-body dosimetry verification phantom was used to ultimately estimate effective dose and risk according tomore » the model of the BEIR VII committee. Both phantoms were scanned over a mAs range (10, 20, 30, and 40), while all other acquisition parameters remained constant. Images were reconstructed with both AIDR{sup 3D} and FBP. For the observer study, 34 normal cases (no nodules) and 34 abnormal cases (containing 1–3 nodules, mean 1.35 ± 0.54) were chosen. Eleven observers evaluated images from all mAs and reconstruction methods under the free-response paradigm. A crossed-modality jackknife alternative free-response operating characteristic (JAFROC) analysis method was developed for data analysis, averaging data over the two factors influencing nodule detection in this study: mAs and image reconstruction (AIDR{sup 3D} or FBP). A Bonferroni correction was applied and the threshold for declaring significance was set at 0.025 to maintain the overall probability of Type I error at α = 0.05. Contrast-to-noise (CNR) was also measured for all nodules and evaluated by a linear least squares analysis. Results: For random-reader fixed-case crossed-modality JAFROC analysis, there was no significant difference in nodule detection between AIDR{sup 3D} and FBP when data were averaged over mAs [F(1, 10) = 0.08, p = 0.789]. However, when data were averaged over reconstruction methods, a significant difference was seen between multiple pairs of mAs settings [F(3, 30) = 15.96, p < 0.001]. Measurements of effective dose and effective risk showed the expected linear dependence on mAs. Nodule CNR was statistically higher for simulated nodules on images reconstructed with AIDR{sup 3D} (p < 0.001). Conclusions: No significant difference in nodule detection performance was demonstrated between images reconstructed with FBP and AIDR{sup 3D}. mAs was found to influence nodule detection, though further work is required for dose optimization.« less

Extension of the Haseman-Elston regression model to longitudinal data.

PubMed

Won, Sungho; Elston, Robert C; Park, Taesung

2006-01-01

We propose an extension to longitudinal data of the Haseman and Elston regression method for linkage analysis. The proposed model is a mixed model having several random effects. As response variable, we investigate the sibship sample mean corrected cross-product (smHE) and the BLUP-mean corrected cross product (pmHE), comparing them with the original squared difference (oHE), the overall mean corrected cross-product (rHE), and the weighted average of the squared difference and the squared mean-corrected sum (wHE). The proposed model allows for the correlation structure of longitudinal data. Also, the model can test for gene x time interaction to discover genetic variation over time. The model was applied in an analysis of the Genetic Analysis Workshop 13 (GAW13) simulated dataset for a quantitative trait simulating systolic blood pressure. Independence models did not preserve the test sizes, while the mixed models with both family and sibpair random effects tended to preserve size well. Copyright 2006 S. Karger AG, Basel.

The level crossing rates and associated statistical properties of a random frequency response function

NASA Astrophysics Data System (ADS)

Langley, Robin S.

2018-03-01

This work is concerned with the statistical properties of the frequency response function of the energy of a random system. Earlier studies have considered the statistical distribution of the function at a single frequency, or alternatively the statistics of a band-average of the function. In contrast the present analysis considers the statistical fluctuations over a frequency band, and results are obtained for the mean rate at which the function crosses a specified level (or equivalently, the average number of times the level is crossed within the band). Results are also obtained for the probability of crossing a specified level at least once, the mean rate of occurrence of peaks, and the mean trough-to-peak height. The analysis is based on the assumption that the natural frequencies and mode shapes of the system have statistical properties that are governed by the Gaussian Orthogonal Ensemble (GOE), and the validity of this assumption is demonstrated by comparison with numerical simulations for a random plate. The work has application to the assessment of the performance of dynamic systems that are sensitive to random imperfections.

Genomic selection using beef commercial carcass phenotypes.

PubMed

Todd, D L; Roughsedge, T; Woolliams, J A

2014-03-01

In this study, an industry terminal breeding goal was used in a deterministic simulation, using selection index methodology, to predict genetic gain in a beef population modelled on the UK pedigree Limousin, when using genomic selection (GS) and incorporating phenotype information from novel commercial carcass traits. The effect of genotype-environment interaction was investigated by including the model variations of the genetic correlation between purebred and commercial cross-bred performance (ρX). Three genomic scenarios were considered: (1) genomic breeding values (GBV)+estimated breeding values (EBV) for existing selection traits; (2) GBV for three novel commercial carcass traits+EBV in existing traits; and (3) GBV for novel and existing traits plus EBV for existing traits. Each of the three scenarios was simulated for a range of training population (TP) sizes and with three values of ρX. Scenarios 2 and 3 predicted substantially higher percentage increases over current selection than Scenario 1. A TP of 2000 sires, each with 20 commercial progeny with carcass phenotypes, and assuming a ρX of 0.7, is predicted to increase gain by 40% over current selection in Scenario 3. The percentage increase in gain over current selection increased with decreasing ρX; however, the effect of varying ρX was reduced at high TP sizes for Scenarios 2 and 3. A further non-genomic scenario (4) was considered simulating a conventional population-wide progeny test using EBV only. With 20 commercial cross-bred progenies per sire, similar gain was predicted to Scenario 3 with TP=5000 and ρX=1.0. The range of increases in genetic gain predicted for terminal traits when using GS are of similar magnitude to those observed after the implementation of BLUP technology in the United Kingdom. It is concluded that implementation of GS in a terminal sire breeding goal, using purebred phenotypes alone, will be sub-optimal compared with the inclusion of novel commercial carcass phenotypes in genomic evaluations.

Understanding the role of moisture transport on the dry bias in indian monsoon simulations by CFSv2

NASA Astrophysics Data System (ADS)

Sahana, A. S.; Pathak, Amey; Roxy, M. K.; Ghosh, Subimal

2018-02-01

We analyse the bias present in the Indian Summer Monsoon Rainfall (ISMR), as simulated by Climate Forecast System Model 2 (CFSv2), the operational model used for monsoon forecasts in India. In the simulations, the precipitation intensity is redistributed within the ITCZ band with southward shifts of precipitation maxima. We observe weakening of maximum intensity of precipitation over the region between 20°N and 14°N. In the simulations by CFSv2, there exists two rain bands: the northern one located slightly southward compared to reanalysis dataset and the southern one over the equator with intensified precipitation. This results in dry bias over land and wet bias over the ocean. We use a Dynamic Recycling Model, based on Lagrangian approach, to investigate the role of various moisture sources in generating these biases. We find that, the dry bias during June exists due to the delayed monsoon onset and reduced moisture flow from the Arabian Sea. As the monsoon progresses, deficiency in the simulated contributions from South Indian Ocean becomes the key source of bias. The reduced supply of moisture from oceanic sources is primarily attributed to the weaker northward transport of moisture flux from the Southern Ocean, associated with a weaker southward energy flux. Inefficiency of the model in simulating the heating in Tibetan plateau during the pre-monsoon period leads to this reduced cross equatorial energy flow. We also find that, towards the end of monsoon season, moisture contributions from land sources namely, Ganga Basin and North-Eastern forests become significant and underestimations of the same in the simulations by CFSv2 result into biases over Central and Eastern India.

An analytical solution for Dean flow in curved ducts with rectangular cross section

NASA Astrophysics Data System (ADS)

Norouzi, M.; Biglari, N.

2013-05-01

In this paper, a full analytical solution for incompressible flow inside the curved ducts with rectangular cross-section is presented for the first time. The perturbation method is applied to solve the governing equations and curvature ratio is considered as the perturbation parameter. The previous perturbation solutions are usually restricted to the flow in curved circular or annular pipes related to the overly complex form of solutions or singularity situation for flow in curved ducts with non-circular shapes of cross section. This issue specifies the importance of analytical studies in the field of Dean flow inside the non-circular ducts. In this study, the main flow velocity, stream function of lateral velocities (secondary flows), and flow resistance ratio in rectangular curved ducts are obtained analytically. The effect of duct curvature and aspect ratio on flow field is investigated as well. Moreover, it is important to mention that the current analytical solution is able to simulate the Taylor-Görtler and Dean vortices (vortices in stable and unstable situations) in curved channels.

Shear thinning effects on blood flow in straight and curved tubes

NASA Astrophysics Data System (ADS)

Cherry, Erica M.; Eaton, John K.

2013-07-01

Simulations were performed to determine the magnitude and types of errors one can expect when approximating blood in large arteries as a Newtonian fluid, particularly in the presence of secondary flows. This was accomplished by running steady simulations of blood flow in straight and curved tubes using both Newtonian and shear-thinning viscosity models. In the shear-thinning simulations, the viscosity was modeled as a shear rate-dependent function fit to experimental data. Simulations in straight tubes were modeled after physiologically relevant arterial flows, and flow parameters for the curved tube simulations were chosen to examine a variety of secondary flow strengths. The diameters ranged from 1 mm to 10 mm and the Reynolds numbers from 24 to 1500. Pressure and velocity data are reported for all simulations. In the straight tube simulations, the shear-thinning flows had flattened velocity profiles and higher pressure gradients compared to the Newtonian simulations. In the curved tube flows, the shear-thinning simulations tended to have blunted axial velocity profiles, decreased secondary flow strengths, and decreased axial vorticity compared to the Newtonian simulations. The cross-sectionally averaged pressure drops in the curved tubes were higher in the shear-thinning flows at low Reynolds number but lower at high Reynolds number. The maximum deviation in secondary flow magnitude averaged over the cross sectional area was 19% of the maximum secondary flow and the maximum deviation in axial vorticity was 25% of the maximum vorticity.

Hydrodynamic boundary condition of water on hydrophobic surfaces.

PubMed

Schaeffel, David; Yordanov, Stoyan; Schmelzeisen, Marcus; Yamamoto, Tetsuya; Kappl, Michael; Schmitz, Roman; Dünweg, Burkhard; Butt, Hans-Jürgen; Koynov, Kaloian

2013-05-01

By combining total internal reflection fluorescence cross-correlation spectroscopy with Brownian dynamics simulations, we were able to measure the hydrodynamic boundary condition of water flowing over a smooth solid surface with exceptional accuracy. We analyzed the flow of aqueous electrolytes over glass coated with a layer of poly(dimethylsiloxane) (advancing contact angle Θ = 108°) or perfluorosilane (Θ = 113°). Within an error of better than 10 nm the slip length was indistinguishable from zero on all surfaces.

Total Cross Sections as a Surrogate for Neutron Capture: An Opportunity to Accurately Constrain (n,γ) Cross Sections for Nuclides Beyond the Reach of Direct Measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koehler, Paul E.

2014-03-05

There are many (n,γ) cross sections of great interest to radiochemical diagnostics and to nuclear astrophysics which are beyond the reach of current measurement techniques, and likely to remain so for the foreseeable future. In contrast, total neutron cross sections currently are feasible for many of these nuclides and provide almost all the information needed to accurately calculate the (n,γ) cross sections via the nuclear statistical model (NSM). I demonstrate this for the case of 151Sm; NSM calculations constrained using average resonance parameters obtained from total cross section measurements made in 1975, are in excellent agreement with recent 151Sm (n,γ)more » measurements across a wide range of energy. Furthermore, I demonstrate through simulations that total cross section measurements can be made at the Manuel Lujan Jr. Neutron Scattering Center at the Los Alamos Neutron Science Center for samples as small as 10μg. Samples of this size should be attainable for many nuclides of interest. Finally, I estimate that over half of the radionuclides identified ~20 years ago as having (n,γ) cross sections of importance to s-process nucleosynthesis studies (24/43) and radiochemical diagnostics (11/19), almost none of which have been measured, can be constrained using this technique.« less

Geology and ground-water resources in the Zebulon area, Georgia

USGS Publications Warehouse

Chapman, M.J.; Milby, B.J.; Peck, M.F.

1993-01-01

The current (1991) surface-water source of drinking-water supply for the city of Zebulon, Pike County, Georgia, no longer provides an adequate water supply and periodically does not meet water-quality standards. The hydrogeology of crystalline rocks in the Zebulon area was evaluated to assess the potential of ground-water resources as a supplemental or alternative source of water to present surface-water supplies. As part of the ground-water resource evaluation, well location and construction data were compiled, a geologic map was constructed, and ground water was sampled and analyzed. Three mappable geologic units delineated during this study provide a basic understanding of hydrogeologic settings in the Zebulon area. Rock types include a variety of aluminosilicate schists, granitic rocks, amphibolites/honblende gneisses, and gondites. Several geologic features that may enhance ground-water availability were identified in the study area. These features include contacts between contrasting rock types, where a high degree of differential weathering has occurred, and well-developed structural features, such as foliation and jointing are present. High-yielding wells (greater than 25 gallons per minute) and low-yielding wells (less than one gallon per minute) were located in all three geologic units in a variety of topographic settings. Well yields range from less than one gallon per minute to 250 gallons per minute. The variable total depths and wide ranges of casing depths of the high-yielding wells are indicative of variations in depths to water-bearing zones and regolith thicknesses, respectively. The depth of water-bearing zones is highly variable, even on a local scale. Analyses of ground-water samples indicate that the distribution of iron concentration is as variable as well yield in the study area and does not seem to be related to a particular rock type. Iron concentrations in ground-water samples ranged from 0.02 to 5.3 milligrams per liter. Both iron concentration and well yield vary substantially over a relatively small area. Implementation and Verification of a One-Dimensional, Unsteady-Flow Model for Spring Brook near Warrenville, Illinois By Mary J. Turner, Anthony P. Pulokas, and Audrey L. Ishii Abstract A one-dimensional, unsteady-flow model, Full EQuations (FEQ) model, based on de Saint-Venant equations for dynamic flow in open channels, was calibrated and verified for a 0.75-mile reach of Spring Brook, a tributary to the West Branch Du Page River, near Warrenville in northeastern Illinois. The model was used to simulate streamflow in a small urban stream reach with two short culverts, one with overbank flow around the culvert during high flows. Streamflow data were collected on the reach during three high-flow periods. Data from one period were used to calibrate the model, and data from the other two periods were used to verify the model. Stages and discharges over the periods were simulated, and the results were compared graphically with stage and discharge data collected at 10 sites in the study reach. Errors in simulated stage and discharge were small except when debris, not represented in the model, clogged the culvert. The effects of changes in physical and computational model parameters also were studied. The model was insensit'lve to replacement of measured cross sections with interpolated cross sections, especially if the measured thalweg elevation was preserved. Variation of the roughness, slope, and length of the culvert over-bank section, as well as the chosen representative measured cross section, caused only slight changes in the simulated peak stage and discharge. Changes in the modeled culvert area caused large differences in the simulated highflows in the vicinity of the culvert, whereas simulated low flows were unaffected. At all flows, the misrepresentation of the culvert area caused the simulated water-surface elevations to deviate from the measured elevations, especially on the falling

Investigation of Altitude Starting and Acceleration Characteristics of J47 Turbojet Engine

NASA Technical Reports Server (NTRS)

Golladay, Richard L; Bloomer, Harry E

1951-01-01

An investigation was conducted on an axial-flow-compressor type turbojet engine in the NACA Lewis altitude wind tunnel to determine the operational characteristics of several ignition systems, cross-fire tube configurations and fuel systems over a range of simulated flight conditions. The opposite-polarity-type spark plug provided the most satisfactory ignition. Increasing the cross-fire-tube diameter improved intercombustor flame propagation. At high windmilling speeds, accelerations to approximately 6200 rpm could be made at a preset constant throttle position. The use of a variable-area nozzle reduced acceleration time.

The influence of simulator input conditions on the wear of total knee replacements: An experimental and computational study

PubMed Central

Brockett, Claire L; Abdelgaied, Abdellatif; Haythornthwaite, Tony; Hardaker, Catherine; Fisher, John; Jennings, Louise M

2016-01-01

Advancements in knee replacement design, material and sterilisation processes have provided improved clinical results. However, surface wear of the polyethylene leading to osteolysis is still considered the longer-term risk factor. Experimental wear simulation is an established method for evaluating the wear performance of total joint replacements. The aim of this study was to investigate the influence of simulation input conditions, specifically input kinematic magnitudes, waveforms and directions of motion and position of the femoral centre of rotation, on the wear performance of a fixed-bearing total knee replacement through a combined experimental and computational approach. Studies were completed using conventional and moderately cross-linked polyethylene to determine whether the influence of these simulation input conditions varied with material. The position of the femoral centre of rotation and the input kinematics were shown to have a significant influence on the wear rates. Similar trends were shown for both the conventional and moderately cross-linked polyethylene materials, although lower wear rates were found for the moderately cross-linked polyethylene due to the higher level of cross-linking. The most important factor influencing the wear was the position of the relative contact point at the femoral component and tibial insert interface. This was dependent on the combination of input displacement magnitudes, waveforms, direction of motion and femoral centre of rotation. This study provides further evidence that in order to study variables such as design and material in total knee replacement, it is important to carefully control knee simulation conditions. This can be more effectively achieved through the use of displacement control simulation. PMID:27160561

A review of the LATEX project: mesoscale to submesoscale processes in a coastal environment

NASA Astrophysics Data System (ADS)

Petrenko, Anne A.; Doglioli, Andrea M.; Nencioli, Francesco; Kersalé, Marion; Hu, Ziyuan; d'Ovidio, Francesco

2017-04-01

The main objective of the LAgrangian Transport EXperiment (LATEX) project was to study the influence of coastal mesoscale and submesoscale physical processes on circulation dynamics, cross-shelf exchanges, and biogeochemistry in the western continental shelf of the Gulf of Lion, Northwestern Mediterranean Sea. LATEX was a five-year multidisciplinary project based on the combined analysis of numerical model simulations and multi-platform field experiments. The model component included a ten-year realistic 3D numerical simulation, with a 1 km horizontal resolution over the gulf, nested in a coarser 3 km resolution model. The in situ component involved four cruises, including a large-scale multidisciplinary campaign with two research vessels in 2010. This review concentrates on the physics results of LATEX, addressing three main subjects: (1) the investigation of the mesoscale to submesoscale processes. The eddies are elliptic, baroclinic, and anticyclonic; the strong thermal and saline front is density compensated. Their generation processes are studied; (2) the development of sampling strategies for their direct observations. LATEX has implemented an adaptive strategy Lagrangian tool, with a reference software available on the web, to perform offshore campaigns in a Lagrangian framework; (3) the quantification of horizontal mixing and cross-shelf exchanges. Lateral diffusivity coefficients, calculated in various ways including a novel technique, are in the range classically encountered for their associated scales. Cross-shelf fluxes have been calculated, after retrieving the near-inertial oscillation contribution. Further perspectives are discussed, especially for the ongoing challenge of studying submesoscale features remotely and from in situ data.

On the role of tropopause folds in summertime tropospheric ozone over the eastern Mediterranean and the Middle East

NASA Astrophysics Data System (ADS)

Akritidis, Dimitris; Pozzer, Andrea; Zanis, Prodromos; Tyrlis, Evangelos; Škerlak, Bojan; Sprenger, Michael; Lelieveld, Jos

2016-11-01

We study the contribution of tropopause folds in the summertime pool of tropospheric ozone over the eastern Mediterranean and the Middle East (EMME) with the aid of the ECHAM5/MESSy Atmospheric Chemistry (EMAC) model. Tropopause fold events in EMAC simulations were identified with a 3-D labeling algorithm that detects folds at grid points where multiple crossings of the dynamical tropopause are computed. Subsequently the events featuring the largest horizontal and vertical extent were selected for further study. For the selection of these events we identified a significant contribution of the stratospheric ozone reservoir to the high concentrations of ozone in the middle and lower free troposphere over the EMME. A distinct increase of ozone is found over the EMME in the middle troposphere during summer as a result of the fold activity, shifting towards the southeast and decreasing altitude. We find that the interannual variability of near-surface ozone over the eastern Mediterranean (EM) during summer is related to that of both tropopause folds and ozone in the free troposphere.

Multibaseline gravitational wave radiometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Talukder, Dipongkar; Bose, Sukanta; Mitra, Sanjit

2011-03-15

We present a statistic for the detection of stochastic gravitational wave backgrounds (SGWBs) using radiometry with a network of multiple baselines. We also quantitatively compare the sensitivities of existing baselines and their network to SGWBs. We assess how the measurement accuracy of signal parameters, e.g., the sky position of a localized source, can improve when using a network of baselines, as compared to any of the single participating baselines. The search statistic itself is derived from the likelihood ratio of the cross correlation of the data across all possible baselines in a detector network and is optimal in Gaussian noise.more » Specifically, it is the likelihood ratio maximized over the strength of the SGWB and is called the maximized-likelihood ratio (MLR). One of the main advantages of using the MLR over past search strategies for inferring the presence or absence of a signal is that the former does not require the deconvolution of the cross correlation statistic. Therefore, it does not suffer from errors inherent to the deconvolution procedure and is especially useful for detecting weak sources. In the limit of a single baseline, it reduces to the detection statistic studied by Ballmer [Classical Quantum Gravity 23, S179 (2006).] and Mitra et al.[Phys. Rev. D 77, 042002 (2008).]. Unlike past studies, here the MLR statistic enables us to compare quantitatively the performances of a variety of baselines searching for a SGWB signal in (simulated) data. Although we use simulated noise and SGWB signals for making these comparisons, our method can be straightforwardly applied on real data.« less

Coupled simulations and comparison with multi-lidar measurements of the wind flow over a double-ridge

NASA Astrophysics Data System (ADS)

Veiga Rodrigues, C.; Palma, JMLM; Vasiljević, N.; Courtney, M.; Mann, J.

2016-09-01

The wind flow over a double-ridge site has been numerically simulated with a nested model- chain coupling, down to horizontal resolutions of 40 m. The results were compared with field measurements attained using a triple-lidar instrument, the long-range WindScanner system, which allowed measurements up to 500 m height and the mapping of the wind speed onto a two-dimensional transect crossing the valley. The site, known as Serra do Perdigão, is located in central Portugal and consists of two parallel ridges 1.4 km apart with height differences of 200 m in between, being characterized by rough terrain and forested areas. The analysis was restricted to June 10th 2015, for which measurements and simulations both predicted gravity wave activity, the later showing formation of rotors in the lee of both ridges and some events of wave breaking above the ridge top.

Attitude control/momentum management of the Space Station Freedom for large angle torque-equilibrium-attitude configurations

NASA Technical Reports Server (NTRS)

Parlos, Alexander G.; Sunkel, John W.

1990-01-01

An attitude-control and momentum-management (ACMM) system for the Space Station in a large-angle torque-equilibrium-attitude (TEA) configuration is developed analytically and demonstrated by means of numerical simulations. The equations of motion for a rigid-body Space Station model are outlined; linearized equations for an arbitrary TEA (resulting from misalignment of control and body axes) are derived; the general requirements for an ACMM are summarized; and a pole-placement linear-quadratic regulator solution based on scheduled gains is proposed. Results are presented in graphs for (1) simulations based on configuration MB3 (showing the importance of accounting for the cross-inertia terms in the TEA estimate) and (2) simulations of a stepwise change from configuration MB3 to the 'assembly complete' stage over 130 orbits (indicating that the present ACCM scheme maintains sufficient control over slowly varying Space Station dynamics).

A simulation of cross-country skiing on varying terrain by using a mathematical power balance model

PubMed Central

Moxnes, John F; Sandbakk, Øyvind; Hausken, Kjell

2013-01-01

The current study simulated cross-country skiing on varying terrain by using a power balance model. By applying the hypothetical inductive deductive method, we compared the simulated position along the track with actual skiing on snow, and calculated the theoretical effect of friction and air drag on skiing performance. As input values in the model, air drag and friction were estimated from the literature, whereas the model included relationships between heart rate, metabolic rate, and work rate based on the treadmill roller-ski testing of an elite cross-country skier. We verified this procedure by testing four models of metabolic rate against experimental data on the treadmill. The experimental data corresponded well with the simulations, with the best fit when work rate was increased on uphill and decreased on downhill terrain. The simulations predicted that skiing time increases by 3%–4% when either friction or air drag increases by 10%. In conclusion, the power balance model was found to be a useful tool for predicting how various factors influence racing performance in cross-country skiing. PMID:24379718

A simulation of cross-country skiing on varying terrain by using a mathematical power balance model.

PubMed

Moxnes, John F; Sandbakk, Oyvind; Hausken, Kjell

2013-01-01

The current study simulated cross-country skiing on varying terrain by using a power balance model. By applying the hypothetical inductive deductive method, we compared the simulated position along the track with actual skiing on snow, and calculated the theoretical effect of friction and air drag on skiing performance. As input values in the model, air drag and friction were estimated from the literature, whereas the model included relationships between heart rate, metabolic rate, and work rate based on the treadmill roller-ski testing of an elite cross-country skier. We verified this procedure by testing four models of metabolic rate against experimental data on the treadmill. The experimental data corresponded well with the simulations, with the best fit when work rate was increased on uphill and decreased on downhill terrain. The simulations predicted that skiing time increases by 3%-4% when either friction or air drag increases by 10%. In conclusion, the power balance model was found to be a useful tool for predicting how various factors influence racing performance in cross-country skiing.

Intravenous volume tomographic pulmonary angiography imaging

NASA Astrophysics Data System (ADS)

Ning, Ruola; Strang, John G.; Chen, Biao; Conover, David L.; Yu, Rongfeng

1999-05-01

This study presents a new intravenous (IV) tomographic angiography imaging technique, called intravenous volume tomographic digital angiography (VTDA) for cross sectional pulmonary angiography. While the advantages of IV-VTDA over spiral CT in terms of volume scanning time and resolution have been validated and reported in our previous papers for head and neck vascular imaging, the superiority of IV-VTDA over spiral CT for cross sectional pulmonary angiography has not been explored yet. The purpose of this study is to demonstrate the advantage of isotropic resolution of IV-VTDA in the x, y and z directions through phantom and animal studies, and to explore its clinical application for detecting clots in pulmonary angiography. A prototype image intensifier-based VTDA imaging system has been designed and constructed by modifying a GE 8800 CT scanner. This system was used for a series of phantom and dog studies. A pulmonary vascular phantom was designed and constructed. The phantom was scanned using the prototype VTDA system for direct 3D reconstruction. Then the same phantom was scanned using a GE CT/i spiral CT scanner using the routine pulmonary CT angiography protocols. IV contrast injection and volume scanning protocols were developed during the dog studies. Both VTDA reconstructed images and spiral CT images of the specially designed phantom were analyzed and compared. The detectability of simulated vessels and clots was assessed as the function of iodine concentration levels, oriented angles, and diameters of the vessels and clots. A set of 3D VTDA reconstruction images of dog pulmonary arteries was obtained with different IV injection rates and isotropic resolution in the x, y and z directions. The results of clot detection studies in dog pulmonary arteries have also been shown. This study presents a new tomographic IV angiography imaging technique for cross sectional pulmonary angiography. The results of phantom and animal studies indicate that IV-VTDA is superior to spiral CT for cross sectional pulmonary angiography.

Cognitive—Motor Interference in an Ecologically Valid Street Crossing Scenario

PubMed Central

Janouch, Christin; Drescher, Uwe; Wechsler, Konstantin; Haeger, Mathias; Bock, Otmar; Voelcker-Rehage, Claudia

2018-01-01

Laboratory-based research revealed that gait involves higher cognitive processes, leading to performance impairments when executed with a concurrent loading task. Deficits are especially pronounced in older adults. Theoretical approaches like the multiple resource model highlight the role of task similarity and associated attention distribution problems. It has been shown that in cases where these distribution problems are perceived relevant to participant's risk of falls, older adults prioritize gait and posture over the concurrent loading task. Here we investigate whether findings on task similarity and task prioritization can be transferred to an ecologically valid scenario. Sixty-three younger adults (20–30 years of age) and 61 older adults (65–75 years of age) participated in a virtual street crossing simulation. The participants' task was to identify suitable gaps that would allow them to cross a simulated two way street safely. Therefore, participants walked on a manual treadmill that transferred their forward motion to forward displacements in a virtual city. The task was presented as a single task (crossing only) and as a multitask. In the multitask condition participants were asked, among others, to type in three digit numbers that were presented either visually or auditorily. We found that for both age groups, street crossing as well as typing performance suffered under multitasking conditions. Impairments were especially pronounced for older adults (e.g., longer crossing initiation phase, more missed opportunities). However, younger and older adults did not differ in the speed and success rate of crossing. Further, deficits were stronger in the visual compared to the auditory task modality for most parameters. Our findings conform to earlier studies that found an age-related decline in multitasking performance in less realistic scenarios. However, task similarity effects were inconsistent and question the validity of the multiple resource model within ecologically valid scenarios. PMID:29774001

Scattering of a cross-polarized linear wave by a soliton at an optical event horizon in a birefringent nanophotonic waveguide.

PubMed

Ciret, Charles; Gorza, Simon-Pierre

2016-06-15

The scattering of a linear wave on an optical event horizon, induced by a cross-polarized soliton, is experimentally and numerically investigated in integrated structures. The experiments are performed in a dispersion-engineered birefringent silicon nanophotonic waveguide. In stark contrast with copolarized waves, the large difference between the group velocity of the two cross-polarized waves enables a frequency conversion almost independent of the soliton wavelength. It is shown that the generated idler is only shifted by 10 nm around 1550 nm over a pump tuning range of 350 nm. Simulations using two coupled full vectorial nonlinear Schrödinger equations fully support the experimental results.

Empirical evaluation of data normalization methods for molecular classification

PubMed Central

Huang, Huei-Chung

2018-01-01

Background Data artifacts due to variations in experimental handling are ubiquitous in microarray studies, and they can lead to biased and irreproducible findings. A popular approach to correct for such artifacts is through post hoc data adjustment such as data normalization. Statistical methods for data normalization have been developed and evaluated primarily for the discovery of individual molecular biomarkers. Their performance has rarely been studied for the development of multi-marker molecular classifiers—an increasingly important application of microarrays in the era of personalized medicine. Methods In this study, we set out to evaluate the performance of three commonly used methods for data normalization in the context of molecular classification, using extensive simulations based on re-sampling from a unique pair of microRNA microarray datasets for the same set of samples. The data and code for our simulations are freely available as R packages at GitHub. Results In the presence of confounding handling effects, all three normalization methods tended to improve the accuracy of the classifier when evaluated in an independent test data. The level of improvement and the relative performance among the normalization methods depended on the relative level of molecular signal, the distributional pattern of handling effects (e.g., location shift vs scale change), and the statistical method used for building the classifier. In addition, cross-validation was associated with biased estimation of classification accuracy in the over-optimistic direction for all three normalization methods. Conclusion Normalization may improve the accuracy of molecular classification for data with confounding handling effects; however, it cannot circumvent the over-optimistic findings associated with cross-validation for assessing classification accuracy. PMID:29666754

Vertical Transport by Coastal Mesoscale Convective Systems

NASA Astrophysics Data System (ADS)

Lombardo, K.; Kading, T.

2016-12-01

This work is part of an ongoing investigation of coastal mesoscale convective systems (MCSs), including changes in vertical transport of boundary layer air by storms moving from inland to offshore. The density of a storm's cold pool versus that of the offshore marine atmospheric boundary layer (MABL), in part, determines the ability of the storm to successfully cross the coast, the mechanism driving storm propagation, and the ability of the storm to lift air from the boundary layer aloft. The ability of an MCS to overturn boundary layer air can be especially important over the eastern US seaboard, where warm season coastal MCSs are relatively common and where large coastal population centers generate concentrated regions of pollution. Recent work numerically simulating idealized MCSs in a coastal environment has provided some insight into the physical mechanisms governing MCS coastal crossing success and the impact on vertical transport of boundary layer air. Storms are simulated using a cloud resolving model initialized with atmospheric conditions representative of a Mid-Atlantic environment. Simulations are run in 2-D at 250 m horizontal resolution with a vertical resolution stretched from 100 m in the boundary layer to 250 m aloft. The left half of the 800 km domain is configured to represent land, while the right half is assigned as water. Sensitivity experiments are conducted to quantify the influence of varying MABL structure on MCS coastal crossing success and air transport, with MABL values representative of those observed over the western Mid-Atlantic during warm season. Preliminary results indicate that when the density of the cold pool is much greater than the MABL, the storm successfully crosses the coastline, with lifting of surface parcels, which ascend through the troposphere. When the density of the cold pool is similar to that of the MABL, parcels within the MABL remain at low levels, though parcels above the MABL ascend through the troposphere.

Ab initio state-specific N2 + O dissociation and exchange modeling for molecular simulations

NASA Astrophysics Data System (ADS)

Luo, Han; Kulakhmetov, Marat; Alexeenko, Alina

2017-02-01

Quasi-classical trajectory (QCT) calculations are used in this work to calculate state-specific N2(X1Σ ) +O(3P ) →2 N(4S ) +O(3P ) dissociation and N2(X1Σ ) +O(3P ) →NO(X2Π ) +N(4S ) exchange cross sections and rates based on the 13A″ and 13A' ab initio potential energy surface by Gamallo et al. [J. Chem. Phys. 119, 2545-2556 (2003)]. The calculations consider translational energies up to 23 eV and temperatures between 1000 K and 20 000 K. Vibrational favoring is observed for dissociation reaction at the whole range of collision energies and for exchange reaction around the dissociation limit. For the same collision energy, cross sections for v = 30 are 4 to 6 times larger than those for the ground state. The exchange reaction has an effective activation energy that is dependent on the initial rovibrational level, which is different from dissociation reaction. In addition, the exchange cross sections have a maximum when the total collision energy (TCE) approaches dissociation energy. The calculations are used to generate compact QCT-derived state-specific dissociation (QCT-SSD) and QCT-derived state-specific exchange (QCT-SSE) models, which describe over 1 × 106 cross sections with about 150 model parameters. The models can be used directly within direct simulation Monte Carlo and computational fluid dynamics simulations. Rate constants predicted by the new models are compared to the experimental measurements, direct QCT calculations and predictions by other models that include: TCE model, Bose-Candler QCT-based exchange model, Macheret-Fridman dissociation model, Macheret's exchange model, and Park's two-temperature model. The new models match QCT-calculated and experimental rates within 30% under nonequilibrium conditions while other models under predict by over an order of magnitude under vibrationally-cold conditions.

Optimal Sparse Upstream Sensor Placement for Hydrokinetic Turbines

NASA Astrophysics Data System (ADS)

Cavagnaro, Robert; Strom, Benjamin; Ross, Hannah; Hill, Craig; Polagye, Brian

2016-11-01

Accurate measurement of the flow field incident upon a hydrokinetic turbine is critical for performance evaluation during testing and setting boundary conditions in simulation. Additionally, turbine controllers may leverage real-time flow measurements. Particle image velocimetry (PIV) is capable of rendering a flow field over a wide spatial domain in a controlled, laboratory environment. However, PIV's lack of suitability for natural marine environments, high cost, and intensive post-processing diminish its potential for control applications. Conversely, sensors such as acoustic Doppler velocimeters (ADVs), are designed for field deployment and real-time measurement, but over a small spatial domain. Sparsity-promoting regression analysis such as LASSO is utilized to improve the efficacy of point measurements for real-time applications by determining optimal spatial placement for a small number of ADVs using a training set of PIV velocity fields and turbine data. The study is conducted in a flume (0.8 m2 cross-sectional area, 1 m/s flow) with laboratory-scale axial and cross-flow turbines. Predicted turbine performance utilizing the optimal sparse sensor network and associated regression model is compared to actual performance with corresponding PIV measurements.

Calibration Matters: Advances in Strapdown Airborne Gravimetry

NASA Astrophysics Data System (ADS)

Becker, D.

2015-12-01

Using a commercial navigation-grade strapdown inertial measurement unit (IMU) for airborne gravimetry can be advantageous in terms of cost, handling, and space consumption compared to the classical stable-platform spring gravimeters. Up to now, however, large sensor errors made it impossible to reach the mGal-level using such type IMUs as they are not designed or optimized for this kind of application. Apart from a proper error-modeling in the filtering process, specific calibration methods that are tailored to the application of aerogravity may help to bridge this gap and to improve their performance. Based on simulations, a quantitative analysis is presented on how much IMU sensor errors, as biases, scale factors, cross couplings, and thermal drifts distort the determination of gravity and the deflection of the vertical (DOV). Several lab and in-field calibration methods are briefly discussed, and calibration results are shown for an iMAR RQH unit. In particular, a thermal lab calibration of its QA2000 accelerometers greatly improved the long-term drift behavior. Latest results from four recent airborne gravimetry campaigns confirm the effectiveness of the calibrations applied, with cross-over accuracies reaching 1.0 mGal (0.6 mGal after cross-over adjustment) and DOV accuracies reaching 1.1 arc seconds after cross-over adjustment.

A comparative study of inelastic scattering models at energy levels ranging from 0.5 keV to 10 keV

NASA Astrophysics Data System (ADS)

Hu, Chia-Yu; Lin, Chun-Hung

2017-03-01

Six models, including a single-scattering model, four hybrid models, and one dielectric function model, were evaluated using Monte Carlo simulations for aluminum and copper at incident beam energies ranging from 0.5 keV to 10 keV. The inelastic mean free path, mean energy loss per unit path length, and backscattering coefficients obtained by these models are compared and discussed to understand the merits of the various models. ANOVA (analysis of variance) statistical models were used to quantify the effects of inelastic cross section and energy loss models on the basis of the simulated results deviation from the experimental data for the inelastic mean free path, the mean energy loss per unit path length, and the backscattering coefficient, as well as their correlations. This work in this study is believed to be the first application of ANOVA models towards evaluating inelastic electron beam scattering models. This approach is an improvement over the traditional approach which involves only visual estimation of the difference between the experimental data and simulated results. The data suggests that the optimization of the effective electron number per atom, binding energy, and cut-off energy of an inelastic model for different materials at different beam energies is more important than the selection of inelastic models for Monte Carlo electron scattering simulation. During the simulations, parameters in the equations should be tuned according to different materials for different beam energies rather than merely employing default parameters for an arbitrary material. Energy loss models and cross-section formulas are not the main factors influencing energy loss. Comparison of the deviation of the simulated results from the experimental data shows a significant correlation (p < 0.05) between the backscattering coefficient and energy loss per unit path length. The inclusion of backscattering electrons generated by both primary and secondary electrons for backscattering coefficient simulation is recommended for elements with high atomic numbers. In hybrid models, introducing the inner shell ionization model improves the accuracy of simulated results.

Virtual reality as a tool for cross-cultural communication: an example from military team training

NASA Astrophysics Data System (ADS)

Downes-Martin, Stephen; Long, Mark; Alexander, Joanna R.

1992-06-01

A major problem with communication across cultures, whether professional or national, is that simple language translation if often insufficient to communicate the concepts. This is especially true when the communicators come from highly specialized fields of knowledge or from national cultures with long histories of divergence. This problem becomes critical when the goal of the communication is national negotiation dealing with such high risk items as arms negotiation or trade wars. Virtual Reality technology has considerable potential for facilitating communication across cultures, by immersing the communicators within multiple visual representations of the concepts, and providing control over those representations. Military distributed team training provides a model for virtual reality suitable for cross cultural communication such as negotiation. In both team training and negotiation, the participants must cooperate, agree on a set of goals, and achieve mastery over the concepts being negotiated. Team training technologies suitable for supporting cross cultural negotiation exist (branch wargaming, computer image generation and visualization, distributed simulation), and have developed along different lines than traditional virtual reality technology. Team training de-emphasizes the realism of physiological interfaces between the human and the virtual reality, and emphasizes the interaction of humans with each other and with intelligent simulated agents within the virtual reality. This approach to virtual reality is suggested as being more fruitful for future work.

How can you capture cultural dynamics?

PubMed Central

Kashima, Yoshihisa

2014-01-01

Cross-cultural comparison is a critical method by which we can examine the interaction between culture and psychological processes. However, comparative methods tend to overlook cultural dynamics – the formation, maintenance, and transformation of cultures over time. The present article gives a brief overview of four different types of research designs that have been used to examine cultural dynamics in the literature: (1) cross-temporal methods that trace medium- to long-term changes in a culture; (2) cross-generational methods that explore medium-term implications of cultural transmission; (3) experimental simulation methods that investigate micro-level mechanisms of cultural dynamics; and (4) formal models and computer simulation methods often used to investigate long-term and macro-level implications of micro-level mechanisms. These methods differ in terms of level of analysis for which they are designed (micro vs. macro-level), scale of time for which they are typically used (short-, medium-, or long-term), and direction of inference (deductive vs. empirical method) that they imply. The paper describes examples of these methods, discuss their strengths and weaknesses, and point to their complementarity in inquiries about cultural change. Because cultural dynamics research is about meaning over time, issues deriving from interpretation of meaning and temporal distance between researchers and objects of inquiry can pose threats to the validity of the research and its findings. The methodological question about hermeneutic circle is recalled and further inquiries are encouraged. PMID:25309476

Simulating trait evolution for cross-cultural comparison.

PubMed

Nunn, Charles L; Arnold, Christian; Matthews, Luke; Borgerhoff Mulder, Monique

2010-12-12

Cross-cultural anthropologists have increasingly used phylogenetic methods to study cultural variation. Because cultural behaviours can be transmitted horizontally among socially defined groups, however, it is important to assess whether phylogeny-based methods--which were developed to study vertically transmitted traits among biological taxa--are appropriate for studying group-level cultural variation. Here, we describe a spatially explicit simulation model that can be used to generate data with known degrees of horizontal donation. We review previous results from this model showing that horizontal transmission increases the type I error rate of phylogenetically independent contrasts in studies of correlated evolution. These conclusions apply to cases in which two traits are transmitted as a pair, but horizontal transmission may be less problematic when traits are unlinked. We also use the simulation model to investigate whether measures of homology (the consistency index and the retention index) can detect horizontal transmission of cultural traits. Higher rates of evolutionary change have a stronger depressive impact on measures of homology than higher rates of horizontal transmission; thus, low consistency or retention indices are not necessarily indicative of 'ethnogenesis'. Collectively, these studies demonstrate the importance of using simulations to assess the validity of methods in cross-cultural research.

Comment on "Analysis of single-layer metamaterial absorber with reflection theory" [J. Appl. Phys. 117, 154906 (2015)

NASA Astrophysics Data System (ADS)

Tung, Nguyen Thanh

2016-03-01

In a recent paper, Xiong et al. [J. Appl. Phys. 117, 154906 (2015)] presented the simulated results of a Jerusalem-cross structure in an attempt to elaborate their proposed reflection theory for metamaterial absorbers. Noting that even at non-resonant frequencies the real part of the permeability shows an over-high average value and its imaginary part drops abruptly from positivity to negativity, we argue that their simulated results are unphysical, resulting from an incomplete understanding of the retrieval procedure.

Simulation of the modern arctic climate by the NCAR CCM1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bromwich, D.H.; Tzeng, R.Y.; Parish, T.R.

The NCAR CCM1's simulation of the modern arctic climate is evaluated by comparing a five-year seasonal cycle simulation with the ECMWF global analyses. The sea level pressure (SLP), storm tracks, vertical cross section of height, 500-hPa height, total energy budget, and moisture budget are analyzed to investigate the biases in the simulated arctic climate. The results show that the model simulates anomalously low SLP, too much activity, and anomalously strong baroclinicity to the west of Greenland and vice versa to the east of Greenland. This bias is mainly attributed to the model's topographic representation of Greenland. First, the broadened Greenlandmore » topography in the model distorts the path of cyclone waves over the North Atlantic Ocean. Second, the model oversimulates the ridge over Greenland, which intensifies its blocking effect and steers the cyclone waves clockwise around it and hence produces an artificial [open quotes]circum-Greenland[close quotes] trough. These biases are significantly alleviated when the horizontal resolution increases to T42. Over the Arctic basin, the modal simulates large amounts of low-level (stratus) clouds in winter and almost no stratus in summer, which is opposite to the observations. This bias is mainly due to the location of the simulated SLP features and the negative anomaly of storm activity, which prevent the transport of moisture into this region during summer but favor this transport in winter. 26 refs., 14 figs., 42 tabs.« less

Bistatic radar cross section of a perfectly conducting rhombus-shaped flat plate

NASA Astrophysics Data System (ADS)

Fenn, Alan J.

1990-05-01

The bistatic radar cross section of a perfectly conducting flat plate that has a rhombus shape (equilateral parallelogram) is investigated. The Ohio State University electromagnetic surface patch code (ESP version 4) is used to compute the theoretical bistatic radar cross section of a 35- x 27-in rhombus plate at 1.3 GHz over the bistatic angles 15 deg to 142 deg. The ESP-4 computer code is a method of moments FORTRAN-77 program which can analyze general configurations of plates and wires. This code has been installed and modified at Lincoln Laboratory on a SUN 3 computer network. Details of the code modifications are described. Comparisons of the method of moments simulations and measurements of the rhombus plate are made. It is shown that the ESP-4 computer code provides a high degree of accuracy in the calculation of copolarized and cross-polarized bistatic radar cross section patterns.

A cross-validation package driving Netica with python

USGS Publications Warehouse

Fienen, Michael N.; Plant, Nathaniel G.

2014-01-01

Bayesian networks (BNs) are powerful tools for probabilistically simulating natural systems and emulating process models. Cross validation is a technique to avoid overfitting resulting from overly complex BNs. Overfitting reduces predictive skill. Cross-validation for BNs is known but rarely implemented due partly to a lack of software tools designed to work with available BN packages. CVNetica is open-source, written in Python, and extends the Netica software package to perform cross-validation and read, rebuild, and learn BNs from data. Insights gained from cross-validation and implications on prediction versus description are illustrated with: a data-driven oceanographic application; and a model-emulation application. These examples show that overfitting occurs when BNs become more complex than allowed by supporting data and overfitting incurs computational costs as well as causing a reduction in prediction skill. CVNetica evaluates overfitting using several complexity metrics (we used level of discretization) and its impact on performance metrics (we used skill).

Fault activation and induced seismicity in geological carbon storage – Lessons learned from recent modeling studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rutqvist, Jonny; Rinaldi, Antonio P.; Cappa, Frederic

In the light of current concerns related to induced seismicity associated with geological carbon sequestration (GCS), this paper summarizes lessons learned from recent modeling studies on fault activation, induced seismicity, and potential for leakage associated with deep underground carbon dioxide (CO 2) injection. Model simulations demonstrate that seismic events large enough to be felt by humans require brittle fault properties and continuous fault permeability allowing pressure to be distributed over a large fault patch to be ruptured at once. Heterogeneous fault properties, which are commonly encountered in faults intersecting multilayered shale/sandstone sequences, effectively reduce the likelihood of inducing felt seismicitymore » and also effectively impede upward CO 2 leakage. A number of simulations show that even a sizable seismic event that could be felt may not be capable of opening a new flow path across the entire thickness of an overlying caprock and it is very unlikely to cross a system of multiple overlying caprock units. Site-specific model simulations of the In Salah CO 2 storage demonstration site showed that deep fractured zone responses and associated microseismicity occurred in the brittle fractured sandstone reservoir, but at a very substantial reservoir overpressure close to the magnitude of the least principal stress. We conclude by emphasizing the importance of site investigation to characterize rock properties and if at all possible to avoid brittle rock such as proximity of crystalline basement or sites in hard and brittle sedimentary sequences that are more prone to injection-induced seismicity and permanent damage.« less

Fault activation and induced seismicity in geological carbon storage – Lessons learned from recent modeling studies

DOE PAGES

Rutqvist, Jonny; Rinaldi, Antonio P.; Cappa, Frederic; ...

2016-09-20

In the light of current concerns related to induced seismicity associated with geological carbon sequestration (GCS), this paper summarizes lessons learned from recent modeling studies on fault activation, induced seismicity, and potential for leakage associated with deep underground carbon dioxide (CO 2) injection. Model simulations demonstrate that seismic events large enough to be felt by humans require brittle fault properties and continuous fault permeability allowing pressure to be distributed over a large fault patch to be ruptured at once. Heterogeneous fault properties, which are commonly encountered in faults intersecting multilayered shale/sandstone sequences, effectively reduce the likelihood of inducing felt seismicitymore » and also effectively impede upward CO 2 leakage. A number of simulations show that even a sizable seismic event that could be felt may not be capable of opening a new flow path across the entire thickness of an overlying caprock and it is very unlikely to cross a system of multiple overlying caprock units. Site-specific model simulations of the In Salah CO 2 storage demonstration site showed that deep fractured zone responses and associated microseismicity occurred in the brittle fractured sandstone reservoir, but at a very substantial reservoir overpressure close to the magnitude of the least principal stress. We conclude by emphasizing the importance of site investigation to characterize rock properties and if at all possible to avoid brittle rock such as proximity of crystalline basement or sites in hard and brittle sedimentary sequences that are more prone to injection-induced seismicity and permanent damage.« less

Fully Resolved Simulations of Particle-Bed-Turbulence Interactions in Oscillatory Flows

NASA Astrophysics Data System (ADS)

Apte, S.; Ghodke, C.

2017-12-01

Particle-resolved direct numerical simulations (DNS) are performed to investigate the behavior of an oscillatory flow field over a bed of closely packed fixed spherical particles for a range of Reynolds numbers in transitional and rough turbulent flow regime. Presence of roughness leads to a substantial modification of the underlying boundary layer mechanism resulting in increased bed shear stress, reduction in the near-bed anisotropy, modification of the near-bed sweep and ejection motions along with marked changes in turbulent energy transport mechanisms. Characterization of such resulting flow field is performed by studying statistical descriptions of the near-bed turbulence for different roughness parameters. A double-averaging technique is employed to reveal spatial inhomogeneities at the roughness scale that provide alternate paths of energy transport in the turbulent kinetic energy (TKE) budget. Spatio-temporal characteristics of unsteady particle forces by studying their spatial distribution, temporal auto-correlations, frequency spectra, cross-correlations with near-bed turbulent flow variables and intermittency intermittency in the forces using the concept of impulse are investigated in detail. These first principle simulations provide substantial insights into the modeling of incipient motion of sediments.

The use of molecular dynamics simulations to evaluate the DNA sequence-selectivity of G-A cross-linking PBD-duocarmycin dimers.

PubMed

Jackson, Paul J M; Rahman, Khondaker M; Thurston, David E

2017-01-01

The pyrrolobenzodiazepine (PBD) and duocarmycin families are DNA-interactive agents that covalently bond to guanine (G) and adenine (A) bases, respectively, and that have been joined together to create synthetic dimers capable of cross-linking G-G, A-A, and G-A bases. Three G-A alkylating dimers have been reported in publications to date, with defined DNA-binding sites proposed for two of them. In this study we have used molecular dynamics simulations to elucidate preferred DNA-binding sites for the three published molecular types. For the PBD-CPI dimer UTA-6026 (1), our simulations correctly predicted its favoured binding site (i.e., 5'-C(G)AATTA-3') as identified by DNA cleavage studies. However, for the PBD-CI molecule ('Compound 11', 3), we were unable to reconcile the results of our simulations with the reported preferred cross-linking sequence (5'-ATTTTCC(G)-3'). We found that the molecule is too short to span the five base pairs between the A and G bases as claimed, but should target instead a sequence such as 5'-ATTTC(G)-3' with two less base pairs between the reacting G and A residues. Our simulation results for this hybrid dimer are also in accord with the very low interstrand cross-linking and in vitro cytotoxicity activities reported for it. Although a preferred cross-linking sequence was not reported for the third hybrid dimer ('27eS', 2), our simulations predict that it should span two base pairs between covalently reacting G and A bases (e.g., 5'-GTAT(A)-3'). Copyright © 2016. Published by Elsevier Ltd.

Maximum drag reduction asymptotes and the cross-over to the Newtonian plug

NASA Astrophysics Data System (ADS)

Benzi, R.; de Angelis, E.; L'Vov, V. S.; Procaccia, I.; Tiberkevich, V.

2006-03-01

We employ the full FENE-P model of the hydrodynamics of a dilute polymer solution to derive a theoretical approach to drag reduction in wall-bounded turbulence. We recapture the results of a recent simplified theory which derived the universal maximum drag reduction (MDR) asymptote, and complement that theory with a discussion of the cross-over from the MDR to the Newtonian plug when the drag reduction saturates. The FENE-P model gives rise to a rather complex theory due to the interaction of the velocity field with the polymeric conformation tensor, making analytic estimates quite taxing. To overcome this we develop the theory in a computer-assisted manner, checking at each point the analytic estimates by direct numerical simulations (DNS) of viscoelastic turbulence in a channel.

Changes in the shoreline at Paradip Port, India in response to climate change

NASA Astrophysics Data System (ADS)

Gopikrishna, B.; Deo, M. C.

2018-02-01

One of the popular methods to predict shoreline shifts into the future involves use of a shoreline evolution model driven by the historical wave climate. It is however understood by now that historical wave conditions might substantially change in future in response to climate change induced by the global warming. The future shoreline changes as well as sediment transport therefore need to be determined with the help of future projections of wave climate. In this work this is done at the port of Paradip situated along the east coast of India. The high resolution wind resulting from a climate modelling experiment called: CORDEX, South Asia, was used to simulate waves over two time-slices of 25 years each in past and future. The wave simulations were carried out with the help of a numerical wave model. Thereafter, rates of longshore sediment transport as well as shoreline shifts were determined over past and future using a numerical shoreline model. It was found that at Paradip Port the net littoral drift per metre width of cross-shore might go up by 37% and so also the net accumulated drift over the entire cross-shore width by 71%. This could be caused by an increase in the mean significant wave height of around 32% and also by changes in the frequency and direction of waves. The intensification of waves in turn might result from an increase in the mean wind speed of around 19%. Similarly, the horizontal extent of the beach accretion and erosion at the port's southern breakwater might go up by 4 m and 8 m, respectively, from the current level in another 25 years. This study should be useful in framing future port management strategies.

Formation of 2D nanoparticles with block structure in simultaneous electric explosion of conductors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kryzhevich, Dmitrij S., E-mail: kryzhev@ispms.ru, E-mail: kost@ispms.ru; Zolnikov, Konstantin P., E-mail: kryzhev@ispms.ru, E-mail: kost@ispms.ru; Abdrashitov, Andrei V.

2014-11-14

A molecular dynamics simulation of nanoparticle formation in simultaneous electric explosion of conductors is performed. Interatomic interaction is described using potentials calculated in the framework of the embedded atom method. High-rate heating results in failure of the conductors with the formation of nanoparticles. The influence of the heating rate, temperature distribution over the specimen cross-section and the distance between simultaneously exploded conductors on the structure of formed nanoparticles is studied. The calculation results show that the electric explosion of conductors allows the formation of nanoparticles with block structure.

Temporo-spatial gait parameters during street crossing conditions: a comparison between younger and older adults.

PubMed

Vieira, Edgar R; Lim, Hyun-Hwa; Brunt, Denis; Hallal, Camilla Z; Kinsey, Laura; Errington, Lisa; Gonçalves, Mauro

2015-02-01

Most traffic accidents involving pedestrians happen during street crossing. Safe street crossing by older adults requires complex planning and imposes high cognitive demands. Understanding how street crossing situations affect younger and older adults' gait is important to create evidence-based policies, education and training. The objective of this study was to develop and test a method to evaluate temporo-spatial gait parameters of younger and older adults during simulated street crossing situations. Twenty-two younger (25±2 years old) and 22 older adults (73±6 years old) who lived independently in the community completed 3 walking trials at preferred gait speed and during simulated street crossing with regular and with reduced time. There were significant differences between groups (p<0.001) and conditions (p<0.001). Older adults' street crossing walking speed was higher than their preferred speed (p<0.001). Gait during simulated street crossing resulted in significant and progressive gait changes. The methods developed and tested can be used to (1) evaluate if people are at risk of falls and accidents during street crossing situations, (2) to compare among different groups, and (3) to help establish appropriate times for older pedestrians to cross streets safely. The current time to cross streets is too short even for healthy older adults. Copyright © 2014 Elsevier B.V. All rights reserved.

Level-crossing statistics of the horizontal wind speed in the planetary surface boundary layer

NASA Astrophysics Data System (ADS)

Edwards, Paul J.; Hurst, Robert B.

2001-09-01

The probability density of the times for which the horizontal wind remains above or below a given threshold speed is of some interest in the fields of renewable energy generation and pollutant dispersal. However there appear to be no analytic or conceptual models which account for the observed power law form of the distribution of these episode lengths over a range of over three decades, from a few tens of seconds to a day or more. We reanalyze high resolution wind data and demonstrate the fractal character of the point process generated by the wind speed level crossings. We simulate the fluctuating wind speed by a Markov process which approximates the characteristics of the real (non-Markovian) wind and successfully generates a power law distribution of episode lengths. However, fundamental questions concerning the physical basis for this behavior and the connection between the properties of a continuous-time stochastic process and the fractal statistics of the point process generated by its level crossings remain unanswered.

Cross-Layer Adaptive Feedback Scheduling of Wireless Control Systems

PubMed Central

Xia, Feng; Ma, Longhua; Peng, Chen; Sun, Youxian; Dong, Jinxiang

2008-01-01

There is a trend towards using wireless technologies in networked control systems. However, the adverse properties of the radio channels make it difficult to design and implement control systems in wireless environments. To attack the uncertainty in available communication resources in wireless control systems closed over WLAN, a cross-layer adaptive feedback scheduling (CLAFS) scheme is developed, which takes advantage of the co-design of control and wireless communications. By exploiting cross-layer design, CLAFS adjusts the sampling periods of control systems at the application layer based on information about deadline miss ratio and transmission rate from the physical layer. Within the framework of feedback scheduling, the control performance is maximized through controlling the deadline miss ratio. Key design parameters of the feedback scheduler are adapted to dynamic changes in the channel condition. An event-driven invocation mechanism for the feedback scheduler is also developed. Simulation results show that the proposed approach is efficient in dealing with channel capacity variations and noise interference, thus providing an enabling technology for control over WLAN. PMID:27879934

A compressible multiphase framework for simulating supersonic atomization

NASA Astrophysics Data System (ADS)

Regele, Jonathan D.; Garrick, Daniel P.; Hosseinzadeh-Nik, Zahra; Aslani, Mohamad; Owkes, Mark

2016-11-01

The study of atomization in supersonic combustors is critical in designing efficient and high performance scramjets. Numerical methods incorporating surface tension effects have largely focused on the incompressible regime as most atomization applications occur at low Mach numbers. Simulating surface tension effects in high speed compressible flow requires robust numerical methods that can handle discontinuities caused by both material interfaces and shocks. A shock capturing/diffused interface method is developed to simulate high-speed compressible gas-liquid flows with surface tension effects using the five-equation model. This includes developments that account for the interfacial pressure jump that occurs in the presence of surface tension. A simple and efficient method for computing local interface curvature is developed and an acoustic non-dimensional scaling for the surface tension force is proposed. The method successfully captures a variety of droplet breakup modes over a range of Weber numbers and demonstrates the impact of surface tension in countering droplet deformation in both subsonic and supersonic cross flows.

13C Nuclear magnetic resonance studies of kerogen from Cretaceous black shales thermally altered by basaltic intrusions and laboratory simulations

USGS Publications Warehouse

Dennis, L.W.; Maciel, G.E.; Hatcher, P.G.; Simoneit, B.R.T.

1982-01-01

Cretaceous black shales from DSDP Leg 41, Site 368 in the Eastern Atlantic Ocean were thermally altered during the Miocene by an intrusive basalt. The sediments overlying and underlying the intrusive body were subjected to high temperatures (up to ~ 500??C) and, as a result, their kerogen was significantly altered. The extent of this alteration has been determined by examination by means of 13C nuclear magnetic resonance, using cross polarization/magic-angle spinning (CP/MAS). Results indicate that the kerogen becomes progressively more aromatic in the vicinity of the intrusive body. Laboratory heating experiments, simulating the thermal effects of the basaltic intrusion, produced similar results on unaltered shale from the drill core. The 13C CP/MAS results appear to provide a good measure of thermal alteration. ?? 1982.

Simulation of Plasma Transport in a Toroidal Annulus with TEMPEST

NASA Astrophysics Data System (ADS)

Xiong, Z.

2005-10-01

TEMPEST is an edge gyro-kinetic continuum code currently under development at LLNL to study boundary plasma transport over a region extending from inside the H-mode pedestal across the separatrix to the divertor plates. Here we report simulation results from the 4D (θ, ψ, E, μ) TEMPEST, for benchmark purpose, in an annulus region immediately inside the separatrix of a large aspect ratio, circular cross-section tokamak. Besides the normal poloidal trapping regions, there are radial inaccessible regions at a fixed poloid angle, energy and magnetic moment due to the radial variation of the B field. To handle such cases, a fifth-order WENO differencing scheme is used in the radial direction. The particle and heat transport coefficients are obtained for different collisional regimes and compared with the neo-classical transport theory.

When will European countries exceed the 2°C temperature increase?

NASA Astrophysics Data System (ADS)

Caminade, C.; Morse, A. P.

2012-04-01

Climatologists all agree that an increase of 2°C at global scale could have serious socio-economic consequences for the future. The Cancun agreement in 2010 officially stated that "With a view to reducing global greenhouse gas emissions so as to hold the increase in global average temperature below 2 °C above pre- industrial levels . . . Parties should take urgent action to meet this long-term goal." Recent studies highlighted that this threshold is likely to be reached by 2060 at global scale if we follow the higher greenhouse gases emission scenarios. However, this threshold might be crossed earlier over lands, by 2040, for Europe, Asia, North Africa and Canada. This study aims to highlight when this threshold might be reached at the country level for members states of the European Union. A large ensemble of regional climate model simulations driven by the SRESA1B emission scenario carried out within the ENSEMBLES project framework for the European continent is employed to achieve such a task. Results corroborate that the European continent is likely to warm faster than the global average temperatures, with the multi-model ensemble mean crossing the 2°C threshold by 2045-2055. Regionally, Eastern Europe, Scandinavia and the Mediterranean basin are likely to cross that threshold earlier than northwestern/central Europe. As an example of these regional differences, Cyprus is likely to experience a 2°C increase during the mid 2040s while this might happen over Ireland during the late 21st century.

Effects of Subsensory Noise and Fatigue on Knee Landing and Cross-over Cutting Biomechanics in Male Athletes.

PubMed

Qu, Xingda; Jiang, Jianxin; Hu, Xinyao

2018-06-01

The objective of this study was to examine the effects of subsensory noise and fatigue on knee biomechanics during the athletic task of landing followed by cross-over cutting. A total of 32 healthy male athletes participated in the study. They were evenly divided into 2 groups: no fatigue group and fatigue group. Fatigue was induced to the lower extremity by a repetitive squatting exercise in the fatigue group. Subsensory noise was generated by linear miniature vibrators bilaterally placed around the knee joints. During data collection, the participants were instructed to perform landing followed by cross-over cutting in both the subsensory on and off conditions. Dependent variables were selected to assess knee biomechanics in the phases of landing and cross-over cutting, separately. Results showed that fatigue resulted in larger knee flexion during landing and larger knee internal rotation during cross-over cutting. Subsensory noise was found to reduce knee rotation impulse during cross-over cutting. These findings suggest that cross-over cutting is more dangerous than landing in the fatigue condition, and subsensory noise may lead to changes in knee biomechanics consistent with reduced risk of anterior cruciate ligament injuries, but the changes may be task-specific.

A comprehensive combined experimental and computational framework for pre-clinical wear simulation of total knee replacements.

PubMed

Abdelgaied, A; Fisher, J; Jennings, L M

2018-02-01

A more robust pre-clinical wear simulation framework is required in order to simulate wider and higher ranges of activities, observed in different patient populations such as younger more active patients. Such a framework will help to understand and address the reported higher failure rates for younger and more active patients (National_Joint_Registry, 2016). The current study has developed and validated a comprehensive combined experimental and computational framework for pre-clinical wear simulation of total knee replacements (TKR). The input mechanical (elastic modulus and Poisson's ratio) and wear parameters of the moderately cross-linked ultra-high molecular weight polyethylene (UHMWPE) bearing material were independently measured from experimental studies under realistic test conditions, similar to the loading conditions found in the total knee replacements. The wear predictions from the computational wear simulation were validated against the direct experimental wear measurements for size 3 Sigma curved total knee replacements (DePuy, UK) in an independent experimental wear simulation study under three different daily activities; walking, deep squat, and stairs ascending kinematic conditions. The measured compressive mechanical properties of the moderately cross-linked UHMWPE material were more than 20% lower than that reported in the literature under tensile test conditions. The pin-on-plate wear coefficient of moderately cross-linked UHMWPE was significantly dependant of the contact stress and the degree of cross-shear at the articulating surfaces. The computational wear predictions for the TKR from the current framework were consistent and in a good agreement with the independent full TKR experimental wear simulation measurements, with 0.94 coefficient of determination of the framework. In addition, the comprehensive combined experimental and computational framework was able to explain the complex experimental wear trends from the three different daily activities investigated. Therefore, such a framework can be adopted as a pre-clinical simulation approach to optimise different designs, materials, as well as patient's specific total knee replacements for a range of activities. Copyright © 2017. Published by Elsevier Ltd.

Simulations in Cyber-Security: A Review of Cognitive Modeling of Network Attackers, Defenders, and Users

PubMed Central

Veksler, Vladislav D.; Buchler, Norbou; Hoffman, Blaine E.; Cassenti, Daniel N.; Sample, Char; Sugrim, Shridat

2018-01-01

Computational models of cognitive processes may be employed in cyber-security tools, experiments, and simulations to address human agency and effective decision-making in keeping computational networks secure. Cognitive modeling can addresses multi-disciplinary cyber-security challenges requiring cross-cutting approaches over the human and computational sciences such as the following: (a) adversarial reasoning and behavioral game theory to predict attacker subjective utilities and decision likelihood distributions, (b) human factors of cyber tools to address human system integration challenges, estimation of defender cognitive states, and opportunities for automation, (c) dynamic simulations involving attacker, defender, and user models to enhance studies of cyber epidemiology and cyber hygiene, and (d) training effectiveness research and training scenarios to address human cyber-security performance, maturation of cyber-security skill sets, and effective decision-making. Models may be initially constructed at the group-level based on mean tendencies of each subject's subgroup, based on known statistics such as specific skill proficiencies, demographic characteristics, and cultural factors. For more precise and accurate predictions, cognitive models may be fine-tuned to each individual attacker, defender, or user profile, and updated over time (based on recorded behavior) via techniques such as model tracing and dynamic parameter fitting. PMID:29867661

Inhibition of crossed-beam energy transfer induced by expansion-velocity fluctuations

NASA Astrophysics Data System (ADS)

Neuville, C.; Glize, K.; Loiseau, P.; Masson-Laborde, P.-E.; Debayle, A.; Casanova, M.; Baccou, C.; Labaune, C.; Depierreux, S.

2018-04-01

Crossed-beam energy transfer between three laser beams has been experimentally investigated in a flowing plasma. Time-evolution measurements of the amplification of a first beam by a second beam highlighted the inhibition of energy transfer by hydrodynamic modifications of the plasma in the crossing volume due to the propagation of a third beam. According to 3D simulations and an analytical model, it appears that the long-wavelength expansion-velocity fluctuations produced by the propagation of the third beam in the crossing volume are responsible for this mitigation of energy transfer. This effect could be a cause of the over-estimation of the amount of the transferred energy in indirect-drive inertial confinement fusion experiments. Besides, tuning such long-wavelength fluctuations could be a way to completely inhibit CBET at the laser entrance holes of hohlraums.

Local Atmospheric Response to an Open-Ocean Polynya in a High-Resolution Climate Model

DOE PAGES

Weijer, Wilbert; Veneziani, Milena; Stössel, Achim; ...

2017-03-01

For this scientific paper, we study the atmospheric response to an open-ocean polynya in the Southern Ocean by analyzing the results from an atmospheric and oceanic synoptic-scale resolving Community Earth System Model (CESM) simulation. While coarser-resolution versions of CESM generally do not produce open-ocean polynyas in the Southern Ocean, they do emerge and disappear on interannual timescales in the synoptic-scale simulation. This provides an ideal opportunity to study the polynya’s impact on the overlying and surrounding atmosphere. This has been pursued here by investigating the seasonal cycle of differences of surface and air-column variables between polynya and non-polynya years. Ourmore » results indicate significant local impacts on turbulent heat fluxes, precipitation, cloud characteristics, and radiative fluxes. In particular, we find that clouds over polynyas are optically thicker and higher than clouds over sea ice during non-polynya years. Although the lower albedo of polynyas significantly increases the net shortwave absorption, the enhanced cloud brightness tempers this increase by almost 50%. Also, in this model, enhanced longwave radiation emitted from the warmer surface of polynyas is balanced by stronger downwelling fluxes from the thicker cloud deck. Impacts are found to be sensitive to the synoptic wind direction. Strongest regional impacts are found when northeasterly winds cross the polynya and interact with katabatic winds. Finally, surface air pressure anomalies over the polynya are only found to be significant when cold, dry air masses strike over the polynya, i.e. in case of southerly winds.« less

Local Atmospheric Response to an Open-Ocean Polynya in a High-Resolution Climate Model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weijer, Wilbert; Veneziani, Milena; Stössel, Achim

For this scientific paper, we study the atmospheric response to an open-ocean polynya in the Southern Ocean by analyzing the results from an atmospheric and oceanic synoptic-scale resolving Community Earth System Model (CESM) simulation. While coarser-resolution versions of CESM generally do not produce open-ocean polynyas in the Southern Ocean, they do emerge and disappear on interannual timescales in the synoptic-scale simulation. This provides an ideal opportunity to study the polynya’s impact on the overlying and surrounding atmosphere. This has been pursued here by investigating the seasonal cycle of differences of surface and air-column variables between polynya and non-polynya years. Ourmore » results indicate significant local impacts on turbulent heat fluxes, precipitation, cloud characteristics, and radiative fluxes. In particular, we find that clouds over polynyas are optically thicker and higher than clouds over sea ice during non-polynya years. Although the lower albedo of polynyas significantly increases the net shortwave absorption, the enhanced cloud brightness tempers this increase by almost 50%. Also, in this model, enhanced longwave radiation emitted from the warmer surface of polynyas is balanced by stronger downwelling fluxes from the thicker cloud deck. Impacts are found to be sensitive to the synoptic wind direction. Strongest regional impacts are found when northeasterly winds cross the polynya and interact with katabatic winds. Finally, surface air pressure anomalies over the polynya are only found to be significant when cold, dry air masses strike over the polynya, i.e. in case of southerly winds.« less

A Numerical Simulation of a Normal Sonic Jet into a Hypersonic Cross-Flow

NASA Technical Reports Server (NTRS)

Jeffries, Damon K.; Krishnamurthy, Ramesh; Chandra, Suresh

1997-01-01

This study involves numerical modeling of a normal sonic jet injection into a hypersonic cross-flow. The numerical code used for simulation is GASP (General Aerodynamic Simulation Program.) First the numerical predictions are compared with well established solutions for compressible laminar flow. Then comparisons are made with non-injection test case measurements of surface pressure distributions. Good agreement with the measurements is observed. Currently comparisons are underway with the injection case. All the experimental data were generated at the Southampton University Light Piston Isentropic Compression Tube.

Evaluation of Classifier Performance for Multiclass Phenotype Discrimination in Untargeted Metabolomics.

PubMed

Trainor, Patrick J; DeFilippis, Andrew P; Rai, Shesh N

2017-06-21

Statistical classification is a critical component of utilizing metabolomics data for examining the molecular determinants of phenotypes. Despite this, a comprehensive and rigorous evaluation of the accuracy of classification techniques for phenotype discrimination given metabolomics data has not been conducted. We conducted such an evaluation using both simulated and real metabolomics datasets, comparing Partial Least Squares-Discriminant Analysis (PLS-DA), Sparse PLS-DA, Random Forests, Support Vector Machines (SVM), Artificial Neural Network, k -Nearest Neighbors ( k -NN), and Naïve Bayes classification techniques for discrimination. We evaluated the techniques on simulated data generated to mimic global untargeted metabolomics data by incorporating realistic block-wise correlation and partial correlation structures for mimicking the correlations and metabolite clustering generated by biological processes. Over the simulation studies, covariance structures, means, and effect sizes were stochastically varied to provide consistent estimates of classifier performance over a wide range of possible scenarios. The effects of the presence of non-normal error distributions, the introduction of biological and technical outliers, unbalanced phenotype allocation, missing values due to abundances below a limit of detection, and the effect of prior-significance filtering (dimension reduction) were evaluated via simulation. In each simulation, classifier parameters, such as the number of hidden nodes in a Neural Network, were optimized by cross-validation to minimize the probability of detecting spurious results due to poorly tuned classifiers. Classifier performance was then evaluated using real metabolomics datasets of varying sample medium, sample size, and experimental design. We report that in the most realistic simulation studies that incorporated non-normal error distributions, unbalanced phenotype allocation, outliers, missing values, and dimension reduction, classifier performance (least to greatest error) was ranked as follows: SVM, Random Forest, Naïve Bayes, sPLS-DA, Neural Networks, PLS-DA and k -NN classifiers. When non-normal error distributions were introduced, the performance of PLS-DA and k -NN classifiers deteriorated further relative to the remaining techniques. Over the real datasets, a trend of better performance of SVM and Random Forest classifier performance was observed.

Large-scale stress factors affecting coral reefs: open ocean sea surface temperature and surface seawater aragonite saturation over the next 400 years

NASA Astrophysics Data System (ADS)

Meissner, K. J.; Lippmann, T.; Sen Gupta, A.

2012-06-01

One-third of the world's coral reefs have disappeared over the last 30 years, and a further third is under threat today from various stress factors. The main global stress factors on coral reefs have been identified as changes in sea surface temperature (SST) and changes in surface seawater aragonite saturation (Ωarag). Here, we use a climate model of intermediate complexity, which includes an ocean general circulation model and a fully coupled carbon cycle, in conjunction with present-day observations of inter-annual SST variability to investigate three IPCC representative concentration pathways (RCP 3PD, RCP 4.5, and RCP 8.5), and their impact on the environmental stressors of coral reefs related to open ocean SST and open ocean Ωarag over the next 400 years. Our simulations show that for the RCP 4.5 and 8.5 scenarios, the threshold of 3.3 for zonal and annual mean Ωarag would be crossed in the first half of this century. By year 2030, 66-85% of the reef locations considered in this study would experience severe bleaching events at least once every 10 years. Regardless of the concentration pathway, virtually every reef considered in this study (>97%) would experience severe thermal stress by year 2050. In all our simulations, changes in surface seawater aragonite saturation lead changes in temperatures.

A FLUKA simulation of the KLOE electromagnetic calorimeter

NASA Astrophysics Data System (ADS)

Di Micco, B.; Branchini, P.; Ferrari, A.; Loffredo, S.; Passeri, A.; Patera, V.

2007-10-01

We present the simulation of the KLOE calorimeter with the FLUKA Monte Carlo program. The response of the detector to electromagnetic showers has been studied and compared with the publicly available KLOE data. The energy and the time resolution of the electromagnetic clusters is in good agreement with the data. The simulation has been also used to study a possible improvement of the KLOE calorimeter using multianode photo-multipliers. An HAMAMATSU R7600-M16 photomultiplier has been assembled in order to determine the whole cross talk matrix that has been included in the simulation. The cross talk matrix takes into account the effects of a realistic photo-multiplier's electronics and of its coupling to the active material. The performance of the modified readout has been compared to the usual KLOE configuration.

Study on the measures of tunnels side-crossing bridge based on sheltering effects of isolation piles

NASA Astrophysics Data System (ADS)

Tang, Jian; Liu, Jun yan; Liu, Yan

2017-08-01

Based on the transit line 3, we studied the effect of the bridge piles crossed closely from the side by the shield tunnel. Using the three-dimensional finite element numerical analysis software Midas GTS/NX, we analyzed the effect of shield tunnel on pile deformation, statistics are obtained that under the condition of pile, subgrade reinforcement and ground changes. The calculation results show that in the condition of reinforcement, the new tunnel shield crossing through the pile caused longitudinal disturbance of the tunnel surrounding strata along the tunnel, where the soil over the area is within a certain range of pile and settlement deformation of surface subsidence occurs, changing the surface roughly to the shape of “V”. The maximum value appears above the shield tunnel and the value is high. In combination with engineering geology, hydrogeology and environment factors, this paper adopted isolation pile reinforcement to the pile, and the simulated results show that, pile settlement was significantly reduced under the condition of pile reinforcement. The calculation results show the rationality of the reinforcement scheme to a certain extent, which provides a theoretical basis for the similar tunnel.

Monte Carlo study of x-ray cross talk in a variable resolution x-ray detector

NASA Astrophysics Data System (ADS)

Melnyk, Roman; DiBianca, Frank A.

2003-06-01

A variable resolution x-ray (VRX) detector provides a great increase in the spatial resolution of a CT scanner. An important factor that limits the spatial resolution of the detector is x-ray cross-talk. A theoretical study of the x-ray cross-talk is presented in this paper. In the study, two types of the x-ray cross-talk were considered: inter-cell and inter-arm cross-talk. Both types of the x-ray cross-talk were simulated, using the Monte Carlo method, as functions of the detector field of view (FOV). The simulation was repeated for lead and tungsten separators between detector cells. The inter-cell x-ray cross-talk was maximum at the 34-36 cm FOV, but it was low at small and the maximum FOVs. The inter-arm x-ray cross-talk was high at small and medium FOVs, but it was greatly reduced when variable width collimators were placed on the front surfaces of the detector. The inter-cell, but not inter-arm, x-ray cross-talk was lower for tungsten than for lead separators. From the results, x-ray cross-talk in a VRX detector can be minimized by imaging all objects between 24 cm and 40 cm in diameter with the 40 cm FOV, using tungsten separators, and placing variable width collimators in front of the detector.

A critique of the cross-lagged panel model.

PubMed

Hamaker, Ellen L; Kuiper, Rebecca M; Grasman, Raoul P P P

2015-03-01

The cross-lagged panel model (CLPM) is believed by many to overcome the problems associated with the use of cross-lagged correlations as a way to study causal influences in longitudinal panel data. The current article, however, shows that if stability of constructs is to some extent of a trait-like, time-invariant nature, the autoregressive relationships of the CLPM fail to adequately account for this. As a result, the lagged parameters that are obtained with the CLPM do not represent the actual within-person relationships over time, and this may lead to erroneous conclusions regarding the presence, predominance, and sign of causal influences. In this article we present an alternative model that separates the within-person process from stable between-person differences through the inclusion of random intercepts, and we discuss how this model is related to existing structural equation models that include cross-lagged relationships. We derive the analytical relationship between the cross-lagged parameters from the CLPM and the alternative model, and use simulations to demonstrate the spurious results that may arise when using the CLPM to analyze data that include stable, trait-like individual differences. We also present a modeling strategy to avoid this pitfall and illustrate this using an empirical data set. The implications for both existing and future cross-lagged panel research are discussed. (c) 2015 APA, all rights reserved).

HVOSM Studies of Cross-Slope Break on Highway Curves. Phase II Task C

DOT National Transportation Integrated Search

1982-05-01

This research was conducted to investigate the operational effects of cross-slope breaks on highway curves. These breaks are created by the superelevation of the traveled way and the adverse shoulder slope. HVOSM simulation studies were performed on ...

Evaluation of surgical training in the era of simulation

PubMed Central

Shaharan, Shazrinizam; Neary, Paul

2014-01-01

AIM: To assess where we currently stand in relation to simulator-based training within modern surgical training curricula. METHODS: A systematic literature search was performed in PubMed database using keywords “simulation”, “skills assessment” and “surgery”. The studies retrieved were examined according to the inclusion and exclusion criteria. Time period reviewed was 2000 to 2013. The methodology of skills assessment was examined. RESULTS: Five hundred and fifteen articles focussed upon simulator based skills assessment. Fifty-two articles were identified that dealt with technical skills assessment in general surgery. Five articles assessed open skills, 37 assessed laparoscopic skills, 4 articles assessed both open and laparoscopic skills and 6 assessed endoscopic skills. Only 12 articles were found to be integrating simulators in the surgical training curricula. Observational assessment tools, in the form of Objective Structured Assessment of Technical Skills (OSATS) dominated the literature. CONCLUSION: Observational tools such as OSATS remain the top assessment instrument in surgical training especially in open technical skills. Unlike the aviation industry, simulation based assessment has only now begun to cross the threshold of incorporation into mainstream skills training. Over the next decade we expect the promise of simulator-based training to finally take flight and begin an exciting voyage of discovery for surgical trainees. PMID:25228946

Injection in the lower stratosphere of biomass fire emissions followed by long-range transport: a MOZAIC case study

NASA Astrophysics Data System (ADS)

Cammas, J.-P.; Brioude, J.; Chaboureau, J.-P.; Duron, J.; Mari, C.; Mascart, P.; Nédélec, P.; Smit, H.; Pätz, H.-W.; Volz-Thomas, A.; Stohl, A.; Fromm, M.

2008-12-01

This paper analyses a stratospheric injection by deep convection of biomass fire emissions over North America (Alaska, Yukon and Northwest Territories) on 24 June 2004 and its long-range transport over the eastern coast of the United States and the eastern Atlantic. The case study is done using MOZAIC observations of ozone, carbon monoxide, nitrogen oxides (NOx+PAN) and water vapour during the crossing of the southernmost tip of an upper level trough over the Eastern Atlantic on 30 June 03:00 UTC and 10:00 UTC and in a vertical profile over Washington DC on 30 June 17:00 UTC, and by lidar observations of aerosol backscattering at Madison (University of Wisconsin) on 28 June. Attribution of the plumes to the boreal fires is achieved by backward simulations with a Lagrangian particle dispersion model (FLEXPART). A simulation with the Meso-NH model for the source region shows that a boundary layer tracer, mimicking the boreal forest fire smoke, is lofted into the lowermost stratosphere (2-5 pvu layer) during the diurnal convective cycle. The isentropic levels (above 335 K) correspond to those of the downstream MOZAIC observations. The parameterized convective detrainment flux is intense enough to fill the volume of a model mesh (20 km horizontal, 500 m vertical) above the tropopause with pure boundary layer air in a time period compatible with the convective diurnal cycle, i.e. about 5 h. The maximum instantaneous detrainment fluxes deposited about 15-20% of the initial boundary layer tracer concentration at 335 K, which according to the 275-ppbv carbon monoxide maximum mixing ratio observed by MOZAIC over eastern Atlantic, would be associated with a 1.4-1.8 ppmv carbon monoxide mixing ratio in the boundary layer over the source region.

Concentration data and dimensionality in groundwater models: evaluation using inverse modelling

USGS Publications Warehouse

Barlebo, H.C.; Hill, M.C.; Rosbjerg, D.; Jensen, K.H.

1998-01-01

A three-dimensional inverse groundwater flow and transport model that fits hydraulic-head and concentration data simultaneously using nonlinear regression is presented and applied to a layered sand and silt groundwater system beneath the Grindsted Landfill in Denmark. The aquifer is composed of rather homogeneous hydrogeologic layers. Two issues common to groundwater flow and transport modelling are investigated: 1) The accuracy of simulated concentrations in the case of calibration with head data alone; and 2) The advantages and disadvantages of using a two-dimensional cross-sectional model instead of a three-dimensional model to simulate contaminant transport when the source is at the land surface. Results show that using only hydraulic heads in the nonlinear regression produces a simulated plume that is profoundly different from what is obtained in a calibration using both hydraulic-head and concentration data. The present study provides a well-documented example of the differences that can occur. Representing the system as a two-dimensional cross-section obviously omits some of the system dynamics. It was, however, possible to obtain a simulated plume cross-section that matched the actual plume cross-section well. The two-dimensional model execution times were about a seventh of those for the three-dimensional model, but some difficulties were encountered in representing the spatially variable source concentrations and less precise simulated concentrations were calculated by the two-dimensional model compared to the three-dimensional model. Summed up, the present study indicates that three dimensional modelling using both hydraulic heads and concentrations in the calibration should be preferred in the considered type of transport studies.

Modeling Evolution of the Chandeleur Barrier Islands, Southeastern Louisiana: Initial Exploration of a Possible Threshold Crossing

NASA Astrophysics Data System (ADS)

Moore, L. J.; List, J. H.; Williams, S. J.

2007-12-01

Airborne photographic and lidar observations of the 72 km-long Chandeleur Island arc in southeastern Louisiana since August 2005 indicate that large volumes of sediment were removed from the islands during and following Hurricane Katrina and suggest that a return to pre-storm island configuration may be unlikely. Others have suggested, based on recent field observations, that the southern portion of the Chandeleur Islands may be showing signs of becoming an inner shelf shoal. In contrast to these observations, plentiful sand has been observed in the nearshore farther to the north; based on this finding it has been suggested that at least the northern portion of the Chandeleur Islands may be poised for recovery. Given the range of observations, it is unclear if Hurricane Katrina initiated a threshold crossing in the Chandeleurs causing the subaerial, landward- migrating barrier islands to begin evolving as submerged sand shoals. If a threshold crossing has not yet occurred and the Chandeleurs do recover from the impact of Hurricane Katrina, it remains uncertain how imminent a threshold crossing may be. To better understand the potential future evolution of the Chandeleur Islands and to assess the combination of factors that are likely to cause a threshold crossing in this environment, a series of initial model experiments are being conducted using the morphological-behavior model GEOMBEST. This model simulates the evolution of coastal morphology and stratigraphy resulting from changes in relative sea level and sediment supply, and provides insight into how barriers evolve over time scales ranging from decades to millennia. Vibracore logs, geophysical records, bathymetric surveys, and lidar surveys provide data necessary to design the model domain, while sediment budget studies, estimates of sea-level rise rates, and measurements of shoreline change rates provide input and calibration parameters. Late Holocene model runs simulate the evolution of 42 km-long North Chandeleur Island as it migrated from the distal end of the St. Bernard Delta to its modern position. Building on the late Holocene simulation, we present a series of initial, multi-decadal forward model experiments that assess the combination of factors, including relative sea-level rise rates, sediment supply rates, and geologic framework, that are likely to initiate a threshold crossing in the Chandeleur Islands.

A Study of the December 1992 Westerly Wind Burst Event during TOGA COARE

NASA Technical Reports Server (NTRS)

Chen, Chaing; Tao, Wei-Kuo; Duffy, Dean G.; Lai, George S.; Lin, Po-Hsiung

1999-01-01

Using the Penn State/NCAR MM5 mesoscale model, a westerly wind burst (WWB) that occurred during the period from 19 to 30 December 1992 over the Tropical Ocean Global Atmosphere Coupled Ocean-Atmosphere Response Experiment (TOGA COARE) has been simulated and compared with observation. This event is characterized by the presence of super cloud clusters and the occurrence of a major WWB that extended over the western and central Pacific Ocean. Although several of the observed convective systems were not precisely simulated by MM5, the model did capture many other observed characteristics, such as the explosive development of convection, the cyclonic circulation and the WWB. The WWB resulted from the coalescence of three types of tropical disturbances. The first type was a low-level westerly jet (LWJ) that developed at the equator and may be associated with the eastward propagation of an ISO (Intraseasonal Oscillation). The second type featured an easterly wave-like disturbance that originated in the south central Pacific Ocean and propagated westward. Finally, the third type involved a cross-equatorial flow that deflected Northern Hemispheric easterlies into the Southern Hemisphere and may be caused by inertial instability. These disturbances worked in concert, resulting in intense convection over the TOGA COARE region. Once intense convection developed, a large-scale circulation was produced over the western Pacific warm pool, propagated eastward, and initiated a WWB.

Driving Chemical Reactions in Plasmonic Nanogaps with Electrohydrodynamic Flow.

PubMed

Thrift, William J; Nguyen, Cuong Q; Darvishzadeh-Varcheie, Mahsa; Zare, Siavash; Sharac, Nicholas; Sanderson, Robert N; Dupper, Torin J; Hochbaum, Allon I; Capolino, Filippo; Abdolhosseini Qomi, Mohammad Javad; Ragan, Regina

2017-11-28

Nanoparticles from colloidal solution-with controlled composition, size, and shape-serve as excellent building blocks for plasmonic devices and metasurfaces. However, understanding hierarchical driving forces affecting the geometry of oligomers and interparticle gap spacings is still needed to fabricate high-density architectures over large areas. Here, electrohydrodynamic (EHD) flow is used as a long-range driving force to enable carbodiimide cross-linking between nanospheres and produces oligomers exhibiting sub-nanometer gap spacing over mm 2 areas. Anhydride linkers between nanospheres are observed via surface-enhanced Raman scattering (SERS) spectroscopy. The anhydride linkers are cleavable via nucleophilic substitution and enable placement of nucleophilic molecules in electromagnetic hotspots. Atomistic simulations elucidate that the transient attractive force provided by EHD flow is needed to provide a sufficient residence time for anhydride cross-linking to overcome slow reaction kinetics. This synergistic analysis shows assembly involves an interplay between long-range driving forces increasing nanoparticle-nanoparticle interactions and probability that ligands are in proximity to overcome activation energy barriers associated with short-range chemical reactions. Absorption spectroscopy and electromagnetic full-wave simulations show that variations in nanogap spacing have a greater influence on optical response than variations in close-packed oligomer geometry. The EHD flow-anhydride cross-linking assembly method enables close-packed oligomers with uniform gap spacings that produce uniform SERS enhancement factors. These results demonstrate the efficacy of colloidal driving forces to selectively enable chemical reactions leading to future assembly platforms for large-area nanodevices.

Oscillating flow and heat transfer in a channel with sudden cross section change

NASA Technical Reports Server (NTRS)

Ibrahim, Mounir; Hashim, Waqar

1993-01-01

We have computationally examined oscillating flow (zero mean) between two parallel plates with a sudden change in cross section. The flow was assumed to be laminar incompressible with the inflow velocity uniform over the channel cross section but varying sinusoidally with time. The cases studied cover wide ranges of Re(sub max) (from 187.5 to 2000), Va (from 1 to 10.66), the expansion ratio (1:2 and 1:4) and A(sub r) (2 and 4). Also, three different geometric cases were discussed: (1) asymmetric expansion/contraction; (2) symmetric expansion/contraction; and (3) symmetric blunt body. For these oscillating flow conditions, the fluid undergoes sudden expansion in one-half of the cycle and sudden contraction inthe other half. The instantaneous friction factor, for some ranges of Re(sub max) and Va, deviated substantially from the steady-state friction factor for the same flow parameters. A region has been identified below which the flow is laminar quasi-steady. A videotape showing computer simulations of the oscillating flow demonstrates the usefulness of the current analyses in providing information on the transient hydraulic phenomena.

Using Kokkos for Performant Cross-Platform Acceleration of Liquid Rocket Simulations

DTIC Science & Technology

2017-05-08

NUMBER (Include area code) 08 May 2017 Briefing Charts 05 April 2017 - 08 May 2017 Using Kokkos for Performant Cross-Platform Acceleration of Liquid ...ERC Incorporated RQRC AFRL-West Using Kokkos for Performant Cross-Platform Acceleration of Liquid Rocket Simulations 2DISTRIBUTION A: Approved for... Liquid Rocket Combustion Simulation SPACE simulation of rotating detonation engine (courtesy of Dr. Christopher Lietz) 3DISTRIBUTION A: Approved

A simulation study on garment manufacturing process

NASA Astrophysics Data System (ADS)

Liong, Choong-Yeun; Rahim, Nur Azreen Abdul

2015-02-01

Garment industry is an important industry and continues to evolve in order to meet the consumers' high demands. Therefore, elements of innovation and improvement are important. In this work, research studies were conducted at a local company in order to model the sewing process of clothes manufacturing by using simulation modeling. Clothes manufacturing at the company involves 14 main processes, which are connecting the pattern, center sewing and side neating, pockets sewing, backside-sewing, attaching the front and back, sleeves preparation, attaching the sleeves and over lock, collar preparation, collar sewing, bottomedge sewing, buttonholing sewing, removing excess thread, marking button, and button cross sewing. Those fourteen processes are operated by six tailors only. The last four sets of processes are done by a single tailor. Data collection was conducted by on site observation and the probability distribution of processing time for each of the processes is determined by using @Risk's Bestfit. Then a simulation model is developed using Arena Software based on the data collected. Animated simulation model is developed in order to facilitate understanding and verifying that the model represents the actual system. With such model, what if analysis and different scenarios of operations can be experimented with virtually. The animation and improvement models will be presented in further work.

Modeling flow around bluff bodies and predicting urban dispersion using large eddy simulation.

PubMed

Tseng, Yu-Heng; Meneveau, Charles; Parlange, Marc B

2006-04-15

Modeling air pollutant transport and dispersion in urban environments is especially challenging due to complex ground topography. In this study, we describe a large eddy simulation (LES) tool including a new dynamic subgrid closure and boundary treatment to model urban dispersion problems. The numerical model is developed, validated, and extended to a realistic urban layout. In such applications fairly coarse grids must be used in which each building can be represented using relatively few grid-points only. By carrying out LES of flow around a square cylinder and of flow over surface-mounted cubes, the coarsest resolution required to resolve the bluff body's cross section while still producing meaningful results is established. Specifically, we perform grid refinement studies showing that at least 6-8 grid points across the bluff body are required for reasonable results. The performance of several subgrid models is also compared. Although effects of the subgrid models on the mean flow are found to be small, dynamic Lagrangian models give a physically more realistic subgrid-scale (SGS) viscosity field. When scale-dependence is taken into consideration, these models lead to more realistic resolved fluctuating velocities and spectra. These results set the minimum grid resolution and subgrid model requirements needed to apply LES in simulations of neutral atmospheric boundary layer flow and scalar transport over a realistic urban geometry. The results also illustrate the advantages of LES over traditional modeling approaches, particularly its ability to take into account the complex boundary details and the unsteady nature of atmospheric boundary layer flow. Thus LES can be used to evaluate probabilities of extreme events (such as probabilities of exceeding threshold pollutant concentrations). Some comments about computer resources required for LES are also included.

Measurements of photo-nuclear jet production in Pb + Pb collisions with ATLAS

DOE PAGES

Angerami, Aaron

2017-09-25

Ultra-peripheral heavy ion collisions provide a unique opportunity to study the parton distributions in the colliding nuclei via the measurement of photo-nuclear jet production. An analysis of jet production in ultra-peripheral Pb+Pb collisions at √ sNN = 5.02 TeV performed using data collected with the ATLAS detector in 2015 is described. The data set corresponds to a total Pb+Pb integrated luminosity of 0.38 nb -1. The ultra-peripheral collisions are selected using a combination of forward neutron and rapidity gap requirements. The cross-sections, not unfolded for detector response, are compared to results from Pythia Monte Carlo simulations re-weighted to match amore » photon spectrum obtained from the STARlight model. As a result, qualitative agreement between data and these simulations is observed over a broad kinematic range suggesting that using these collisions to measure nuclear parton distributions is experimentally realisable.« less

Friction Stir Welding in Wrought and Cast Aluminum Alloys: Heat Transfer Modeling and Thermal History Analysis

NASA Astrophysics Data System (ADS)

Pan, Yi; Lados, Diana A.

2017-02-01

Friction stir welding (FSW) is a technique that can be used for materials joining and local microstructural refinement. Owing to the solid-state character of the process, FSW has significant advantages over traditional fusion welding, including reduced part distortion and overheating. In this study, a novel heat transfer model was developed to predict weld temperature distributions and quantify peak temperatures under various combinations of processing parameters for different wrought and cast Al alloys. Specifically, an analytical analysis was first developed to characterize and predict heat generation rate within the weld nugget, and then a two-dimensional (2D) numerical simulation was performed to evaluate the temperature distribution in the weld cross-section and top-view planes. A further three-dimensional (3D) simulation was developed based on the heat generation analysis. The model was validated by measuring actual temperatures near the weld nugget using thermocouples, and good agreement was obtained for all studied materials and conditions.

Determination of Optimum Sanitizer Levels for Prevention of Salmonella Cross-Contamination of Mature Round Tomatoes in a Laboratory Model Flume System.

PubMed

Sreedharan, Aswathy; Li, You; De, Jaysankar; Gutierrez, Alan; Silverberg, Rachael; Schneider, Keith R

2017-09-01

Salmonella has been reported to be involved in several foodborne illness outbreaks, many of which resulted from consumption of raw tomatoes. This research aimed to optimize and evaluate the concentration of free chlorine (hypochlorous acid [HOCl]) used as a sanitizer to prevent cross-contamination of tomatoes inoculated with a cocktail of five rifampin-resistant Salmonella enterica serovars in a laboratory-based model flume system. Organic load, prepared using sterilized Scotts Premium Topsoil, was added in different quantities to the flume wash water to simulate real-world packinghouse conditions. In a typical packinghouse operation utilizing a recirculating flume system, the organic matter washed from tomato surfaces accumulates over time. In this study, different concentrations (0, 25, 50, 75, and 100 ppm) of HOCl were used as sanitizers under three organic load conditions (0, 650, and 1,000 mg/L chemical oxygen demand). Results showed that 100 ppm of HOCl was necessary to prevent Salmonella cross-contamination of uninoculated tomatoes in the model flume system in the presence of organic loading. Also, when treated with 100 ppm of HOCl, Salmonella levels were reduced by >4.5 log CFU per tomato from inoculated tomatoes in the presence of organic load. At 75 ppm of HOCl, Salmonella cross-contamination was prevented, but only in the absence of organic loading. In studies in which plate counts were negative, whole tomato enrichment studies were performed. No cross-contamination of uninoculated tomatoes was recorded when 100 ppm of HOCl was used, even in the presence of high organic load (1,000 mg/L chemical oxygen demand). Although sanitizer application reduces contamination on tomato surfaces, the primary function of sanitizers in the wash water is to prevent cross-contamination.

Recovering the colour-dependent albedo of exoplanets with high-resolution spectroscopy: from ESPRESSO to the ELT.

NASA Astrophysics Data System (ADS)

Martins, J. H. C.; Figueira, P.; Santos, N. C.; Melo, C.; Garcia Muñoz, A.; Faria, J.; Pepe, F.; Lovis, C.

2018-05-01

The characterization of planetary atmospheres is a daunting task, pushing current observing facilities to their limits. The next generation of high-resolution spectrographs mounted on large telescopes - such as ESPRESSO@VLT and HIRES@ELT - will allow us to probe and characterize exoplanetary atmospheres in greater detail than possible to this point. We present a method that permits the recovery of the colour-dependent reflectivity of exoplanets from high-resolution spectroscopic observations. Determining the wavelength-dependent albedo will provide insight into the chemical properties and weather of the exoplanet atmospheres. For this work, we simulated ESPRESSO@VLT and HIRES@ELT high-resolution observations of known planetary systems with several albedo configurations. We demonstrate how the cross correlation technique applied to theses simulated observations can be used to successfully recover the geometric albedo of exoplanets over a range of wavelengths. In all cases, we were able to recover the wavelength dependent albedo of the simulated exoplanets and distinguish between several atmospheric models representing different atmospheric configurations. In brief, we demonstrate that the cross correlation technique allows for the recovery of exoplanetary albedo functions from optical observations with the next generation of high-resolution spectrographs that will be mounted on large telescopes with reasonable exposure times. Its recovery will permit the characterization of exoplanetary atmospheres in terms of composition and dynamics and consolidates the cross correlation technique as a powerful tool for exoplanet characterization.

Quantitative EEG analysis using error reduction ratio-causality test; validation on simulated and real EEG data.

PubMed

Sarrigiannis, Ptolemaios G; Zhao, Yifan; Wei, Hua-Liang; Billings, Stephen A; Fotheringham, Jayne; Hadjivassiliou, Marios

2014-01-01

To introduce a new method of quantitative EEG analysis in the time domain, the error reduction ratio (ERR)-causality test. To compare performance against cross-correlation and coherence with phase measures. A simulation example was used as a gold standard to assess the performance of ERR-causality, against cross-correlation and coherence. The methods were then applied to real EEG data. Analysis of both simulated and real EEG data demonstrates that ERR-causality successfully detects dynamically evolving changes between two signals, with very high time resolution, dependent on the sampling rate of the data. Our method can properly detect both linear and non-linear effects, encountered during analysis of focal and generalised seizures. We introduce a new quantitative EEG method of analysis. It detects real time levels of synchronisation in the linear and non-linear domains. It computes directionality of information flow with corresponding time lags. This novel dynamic real time EEG signal analysis unveils hidden neural network interactions with a very high time resolution. These interactions cannot be adequately resolved by the traditional methods of coherence and cross-correlation, which provide limited results in the presence of non-linear effects and lack fidelity for changes appearing over small periods of time. Copyright © 2013 International Federation of Clinical Neurophysiology. Published by Elsevier Ireland Ltd. All rights reserved.

Bioprosthetic heart valve heterograft biomaterials: structure, mechanical behavior and computational simulation.

PubMed

Sacks, Michael S; Mirnajafi, Ali; Sun, Wei; Schmidt, Paul

2006-11-01

The present review surveys significant developments in the biomechanical characterization and computational simulation of biologically derived chemically cross-linked soft tissues, or 'heterograft' biomaterials, used in replacement bioprosthetic heart valve (BHV). A survey of mechanical characterization techniques, relevant mechanical properties and computational simulation approaches is presented for both the source tissues and cross-linked biomaterials. Since durability remains the critical problem with current bioprostheses, changes with the mechanical behavior with fatigue are also presented. Moreover, given the complex nature of the mechanical properties of heterograft biomaterials it is not surprising that most constitutive (stress-strain) models, historically used to characterize their behavior, were oversimplified. Simulations of BHV function utilizing these models have inevitably been inaccurate. Thus, more recent finite element simulations utilizing nonlinear constitutive models, which achieve greater model fidelity, are reviewed. An important conclusion of this review is the need for accurate constitutive models, rigorously validated with appropriate experimental data, in order that the design benefits of computational models can be realized. Finally, for at least the coming 20 years, BHVs fabricated from heterograft biomaterials will continue to be extensively used, and will probably remain as the dominant valve design. We should thus recognize that rational, scientifically based approaches to BHV biomaterial development and design can lead to significantly improved BHV, over the coming decades, which can potentially impact millions of patients worldwide with heart valve disease.

Ocean acoustic interferometry.

PubMed

Brooks, Laura A; Gerstoft, Peter

2007-06-01

Ocean acoustic interferometry refers to an approach whereby signals recorded from a line of sources are used to infer the Green's function between two receivers. An approximation of the time domain Green's function is obtained by summing, over all source positions (stacking), the cross-correlations between the receivers. Within this paper a stationary phase argument is used to describe the relationship between the stacked cross-correlations from a line of vertical sources, located in the same vertical plane as two receivers, and the Green's function between the receivers. Theory and simulations demonstrate the approach and are in agreement with those of a modal based approach presented by others. Results indicate that the stacked cross-correlations can be directly related to the shaded Green's function, so long as the modal continuum of any sediment layers is negligible.

Cross-flow turbines: physical and numerical model studies towards improved array simulations

NASA Astrophysics Data System (ADS)

Wosnik, M.; Bachant, P.

2015-12-01

Cross-flow, or vertical-axis turbines, show potential in marine hydrokinetic (MHK) and wind energy applications. As turbine designs mature, the research focus is shifting from individual devices towards improving turbine array layouts for maximizing overall power output, i.e., minimizing wake interference for axial-flow turbines, or taking advantage of constructive wake interaction for cross-flow turbines. Numerical simulations are generally better suited to explore the turbine array design parameter space, as physical model studies of large arrays at large model scale would be expensive. However, since the computing power available today is not sufficient to conduct simulations of the flow in and around large arrays of turbines with fully resolved turbine geometries, the turbines' interaction with the energy resource needs to be parameterized, or modeled. Most models in use today, e.g. actuator disk, are not able to predict the unique wake structure generated by cross-flow turbines. Experiments were carried out using a high-resolution turbine test bed in a large cross-section tow tank, designed to achieve sufficiently high Reynolds numbers for the results to be Reynolds number independent with respect to turbine performance and wake statistics, such that they can be reliably extrapolated to full scale and used for model validation. To improve parameterization in array simulations, an actuator line model (ALM) was developed to provide a computationally feasible method for simulating full turbine arrays inside Navier--Stokes models. The ALM predicts turbine loading with the blade element method combined with sub-models for dynamic stall and flow curvature. The open-source software is written as an extension library for the OpenFOAM CFD package, which allows the ALM body force to be applied to their standard RANS and LES solvers. Turbine forcing is also applied to volume of fluid (VOF) models, e.g., for predicting free surface effects on submerged MHK devices. An additional sub-model is considered for injecting turbulence model scalar quantities based on actuator line element loading. Results are presented for the simulation of performance and wake dynamics of axial- and cross-flow turbines and compared with experiments and body-fitted mesh, blade-resolving CFD. Supported by NSF-CBET grant 1150797.

Broadband cross-polarization-based heteronuclear dipolar recoupling for structural and dynamic NMR studies of rigid and soft solids

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kharkov, B. B.; Chizhik, V. I.; Dvinskikh, S. V., E-mail: sergeid@kth.se

2016-01-21

Dipolar recoupling is an essential part of current solid-state NMR methodology for probing atomic-resolution structure and dynamics in solids and soft matter. Recently described magic-echo amplitude- and phase-modulated cross-polarization heteronuclear recoupling strategy aims at efficient and robust recoupling in the entire range of coupling constants both in rigid and highly dynamic molecules. In the present study, the properties of this recoupling technique are investigated by theoretical analysis, spin-dynamics simulation, and experimentally. The resonance conditions and the efficiency of suppressing the rf field errors are examined and compared to those for other recoupling sequences based on similar principles. The experimental datamore » obtained in a variety of rigid and soft solids illustrate the scope of the method and corroborate the results of analytical and numerical calculations. The technique benefits from the dipolar resolution over a wider range of coupling constants compared to that in other state-of-the-art methods and thus is advantageous in studies of complex solids with a broad range of dynamic processes and molecular mobility degrees.« less

An analog method of cross-talk compensation for a RGB wavelength division multiplexed optical link

NASA Astrophysics Data System (ADS)

Chisholm, George; Leveneur, Jérôme; Futter, John; Kennedy, John

2018-06-01

Pulse-width modulation (PWM) over optical fiber can be a very advantageous data transmission approach when an electrically isolated data link is required. The use of wavelength division multiplexing allows multiple data streams to be sent through a single fiber independently. The present investigation aims to demonstrate a novel approach to reduce cross-talk in a three-channel RGB optical link without the need for complex optical componentry. An op-amp circuit is developed to reduce the cross-talk so that the resolution of the PWM data is preserved. An iterative Monte-Carlo simulation approach is used to optimize the op-amp circuit. The approach is developed for a set of three PWM Hall effect magnetometers with 12-bit resolution and 128 Hz sampling rate. We show that, in these conditions, the loss of resolution due to cross-talk is prevented. We also show that the cross-talk compensation allows the RGB PWM link to outperform other transmission schemes.

Radar cross-section reduction based on an iterative fast Fourier transform optimized metasurface

NASA Astrophysics Data System (ADS)

Song, Yi-Chuan; Ding, Jun; Guo, Chen-Jiang; Ren, Yu-Hui; Zhang, Jia-Kai

2016-07-01

A novel polarization insensitive metasurface with over 25 dB monostatic radar cross-section (RCS) reduction is introduced. The proposed metasurface is comprised of carefully arranged unit cells with spatially varied dimension, which enables approximate uniform diffusion of incoming electromagnetic (EM) energy and reduces the threat from bistatic radar system. An iterative fast Fourier transform (FFT) method for conventional antenna array pattern synthesis is innovatively applied to find the best unit cell geometry parameter arrangement. Finally, a metasurface sample is fabricated and tested to validate RCS reduction behavior predicted by full wave simulation software Ansys HFSSTM and marvelous agreement is observed.

Finite element simulation of thickness changes in laminate during thermoforming

NASA Astrophysics Data System (ADS)

White, K. D.; Sherwood, J. A.

2017-10-01

This paper discusses a numerical investigation of thickness changes of Dyneema HB80, a cross-ply thermoplastic lamina, during a helmet thermoforming process. The main mode of deformation during the preform phase of manufacture is in-plane shearing of the fabric. A laminate undergoes varying degrees of shear to conform to the geometric variations over the surface of the preform shape. Decreases in areal coverage that occur with increases in the local shear angle will lead to a resulting increase in local thickness. During the consolidation phase, multiple preform layers are compressed in a set of matched tools, and the compounding of the thickness variations can adversely affect the uniformity of pressure distribution between matched die tooling. Pressure variations over the surface of the part can lead to incomplete consolidation of the ply stack, as well as weakened, resin-rich areas. Because wrinkling of the composite reinforcement, incomplete consolidation and resin-rich areas can result in a compromised structural performance, it is important that the manufacturing process be well understood so it can be designed to mitigate formation of such defects. In the current work, the material properties derived from shear, bending and tensile tests are implemented in a finite element model of the cross-ply lamina. The finite element model uses a hybrid discrete mesoscopic approach, and deep-draw forming of the material is simulated to investigate its formability to a hemispherical geometry. Thickening of the lamina resulting from shear deformation is investigated and incorporated into models single-layer preform simulations. The simulation results are used to inform the design of multiple-layer preforms to mitigate the development of thin regions and out-of-plane waves to ensure complete, uniform consolidation.

Electroproduction of hyperons at low momentum transfer

NASA Astrophysics Data System (ADS)

Acha, Armando R.

A high resolution study of the H(e,e'K+)Λ,Sigma 0 reaction was performed at Hall A, TJNAF as part of the hypernuclear experiment E94-107. One important ingredient to the measurement of the hypernuclear cross section is the elementary cross section for production of hyperons, Λ and Sigma0. This reaction was studied using a hydrogen (i.e. a proton) target. Data were taken at very low Q2 (˜0.07 (GeV/c) 2) and W˜2.2 GeV. Kaons were detected along the direction of q, the momentum transferred by the incident electron (thetaCM˜6°). In addition, there are few data available regarding electroproduction of hyperons at low Q2 and thetaCM and the available theoretical models differ significantly in this kinematical region of W. The measurement of the elementary cross section was performed by scaling the Monte Carlo cross section (MCEEP) with the experimental-to-simulated yield ratio. The Monte Carlo cross section includes an experimental fit and extrapolation from the existing data for electroproduction of hyperons. Moreover, the estimated transverse component of the electroproduction cross section of H(e,e'K+)Λ was compared to the different predictions of the theoretical models and exisiting data curves for photoproductions of hyperons. None of the models fully describe the cross-section results over the entire angular range. Furthermore, measurements of the Sigma 0/Λ production ratio were performed at theta CM˜6°, where data are not available. Finally, data for the measurements of the differential cross sections and the Sigma 0/Λ production were binned in Q2, W and thetaCM to understand the dependence on these variables. These results are not only a fundamental contribution to the hypernuclear spectroscopy studies but also an important experimental measurement to constrain existing theoretical models for the elementary reaction.

Nested large-eddy simulations of nighttime shear-instability waves and transient warming in a steep valley

NASA Astrophysics Data System (ADS)

Zhou, Bowen; Chow, Fotini

2012-11-01

This numerical study investigates the nighttime flow dynamics in a steep valley. The Owens Valley in California is highly complex, and represents a challenging terrain for large-eddy simulations (LES). To ensure a faithful representation of the nighttime atmospheric boundary layer (ABL), realistic external boundary conditions are provided through grid nesting. The model obtains initial and lateral boundary conditions from reanalysis data, and bottom boundary conditions from a land-surface model. We demonstrate the ability to extend a mesoscale model to LES resolutions through a systematic grid-nesting framework, achieving accurate simulations of the stable ABL over complex terrain. Nighttime cold-air flow was channeled through a gap on the valley sidewall. The resulting katabatic current induced a cross-valley flow. Directional shear against the down-valley flow in the lower layers of the valley led to breaking Kelvin-Helmholtz waves at the interface, which is captured only on the LES grid. Later that night, the flow transitioned from down-slope to down-valley near the western sidewall, leading to a transient warming episode. Simulation results are verified against field observations and reveal good spatial and temporal precision. Supported by NSF grant ATM-0645784.

Decorrelation dynamics and spectra in drift-Alfven turbulence

NASA Astrophysics Data System (ADS)

Fernandez Garcia, Eduardo

Motivated by the inability of one-fluid magnetohydrodynamics (MHD) to explain key turbulence characteristics in systems ranging from the solar wind and interstellar medium to fusion devices like the reversed field pinch, this thesis studies magnetic turbulence using a drift-Alfven model that extends MHD by including electron density dynamics. Electron effects play a significant role in the dynamics by changing the structure of turbulent decorrelation in the Alfvenic regime (where fast Alfvenic propagation provides the fastest decorrelation of the system): besides the familiar counter-propagating Alfvenic branches of MHD, an additional branch tied to the diamagnetic and eddy-turn- over rates enters in the turbulent response. This kinematic branch gives hydrodynamic features to turbulence that is otherwise strongly magnetic. Magnetic features are observed in the RMS frequency, energy partitions, cross-field energy transfer and in the turbulent response, whereas hydrodynamic features appear in the average frequency, self-field transfer, turbulent response and finally the wavenumber spectrum. These features are studied via renormalized closure theory and numerical simulation. The closure calculation naturally incorporates the eigenmode structure of the turbulent response in specifying spectral energy balance equations for the magnetic, kinetic and internal (density) energies. Alfvenic terms proportional to cross correlations and involved in cross field transfer compete with eddy-turn-over, self transfer, auto-correlation terms. In the steady state, the kinematic terms dominate the energy balances and yield a 5/3 Kolmogorov spectrum (as observed in the interstellar medium) for the three field energies in the strong turbulence, long wavelength limit. Alfvenic terms establish equipartition of kinetic and magnetic energies. In the limit where wavelengths are short compared to the gyroradius, the Alfvenic terms equipartition the internal and magnetic energies resulting in a steep (-2) spectrum fall-off for those energies while the largely uncoupled kinetic modes still obey a 5/3 law. From the numerical simulations, the response function of drift-Alfven turbulence is measured. Here, a statistical ensemble is constructed from small perturbations of the turbulent amplitudes at fixed wavenumber. The decorrelation structure born out of the eigenmode calculation is verified in the numerical measurement.

The Impact of Sea Surface Temperature on Organized Convective Storms Crossing over Coastlines

NASA Astrophysics Data System (ADS)

Lombardo, K.

2016-02-01

As organized coastal convective storms develop over land and move over the coastal ocean, their storm-scale structures, intensity, and associated weather threats evolve. This study aims to quantify the impact of sea surface temperature on the fundamental mechanisms controlling the evolution of coastal quasi-linear convective systems (QLCSs) as they move offshore. Results from this work will contribute to the improved predictability of these coastal, potentially severe warm season storms. The current work systematically studies the interaction between QLCSs and marine atmospheric boundary layers (MABLs) associated with the coastal ocean in an idealized numerical framework. The initial simulations are run in 2-dimensions, with a 250 m horizontal resolution and a vertical resolution ranging from 100 m in the lowest 3000 m stretched to 250 m at the top of the 20 km domain. To create a numerical environment representative of a coastal region, the western half of the 800 km domain is configured to represent a land surface, while the eastern half represents a water surface. A series of sensitivity experiments are conducted to explore the influence of sea surface temperature and the overlying MABL on coastal QLCSs. Sea surface temperature values are selected to represent values observed within the Mid-Atlantic Bight coastal waters, including 5oC (min SST - January), 14oC (early summer), and 23oC (late summer). The numerical MABL is allowed to develop through surface heat fluxes. Preliminary simulations indicate that SST influences storm structure, with the stratiform precipitation shield becoming progressively wider as SST increases. SST also impacts propagation speed; once the storms are over the water, the early and late summer QLCSs move more quickly than the min SST storm. The physical mechanisms contributing to these and other differences will be discussed.

Design of a polarization-independent, wide-angle, broadband visible absorber

NASA Astrophysics Data System (ADS)

Jia, Xiuli; Wang, Xiaoou

2018-01-01

Many optical systems benefit from elements that can absorb a broad range of wavelengths over a wide range of angles, independent of polarization. In this paper, we present a polarization-independent, wide-angle, broadband absorber in the visible regime that exploits strong symmetric and asymmetric resonance modes of electromagnetic dipoles. It makes use of a bilayer cross-pattern structure which is simple, having five layers that include two stacks of metal ribbon in cross-patterns, two dielectric spacers and a metal reflecting layer. Simulations show that the design exhibits a significantly enhanced absorption property when compared to a device with a bilayer metal film structure or any other complex structure of cross-patterns that have no intersection angle. The maximum absorption efficiency of the device is 100% at resonances, and its absorption characteristics can be maintained over a wide range of angles of incidence - up to ± 60° - regardless of the incident polarization. This strategy can, in principle, be applied to other material systems and could be useful in diverse applications, including thermal emitters, photovoltaics and photodetectors.

Double-layered microstrip metamaterial beam scanning leaky wave antenna with consistent gain and low cross-polarization

NASA Astrophysics Data System (ADS)

An, Yong-li; Tan, Yi-li; Zhang, Hong-bo; Wu, Guo-cheng

2017-12-01

In this paper, a novel double-layered microstrip metamaterial beam scanning leaky wave antenna (LWA) is proposed and investigated to achieve consistent gain and low cross-polarization. Thanks to the continuous phase constant changing from negative to positive values over the passband of the double-layered microstrip metamaterial, the proposed LWA, which consists of 20 identical microstrip metamaterial unit cells, can obtain a continuous beam scanning property from backward to forward directions. The proposed LWA is fabricated and measured. The measured results show that the fabricated antenna obtains a continuous beam scanning angle of 140° over the operating frequency band of 3.80-5.25 GHz (32%), the measured 3 dB gain bandwidth is 30.17% with maximum gain of 11.7 dB. Besides, the measured cross-polarization of the fabricated antenna keeps at a level of at least 30 dB below the co-polarization across the entire radiation region. Moreover, the measured and simulated results are in good agreement with each other, indicating the significance and effectiveness of this method.

Virtual reality and live simulation: a comparison between two simulation tools for assessing mass casualty triage skills.

PubMed

Luigi Ingrassia, Pier; Ragazzoni, Luca; Carenzo, Luca; Colombo, Davide; Ripoll Gallardo, Alba; Della Corte, Francesco

2015-04-01

This study tested the hypothesis that virtual reality simulation is equivalent to live simulation for testing naive medical students' abilities to perform mass casualty triage using the Simple Triage and Rapid Treatment (START) algorithm in a simulated disaster scenario and to detect the improvement in these skills after a teaching session. Fifty-six students in their last year of medical school were randomized into two groups (A and B). The same scenario, a car accident, was developed identically on the two simulation methodologies: virtual reality and live simulation. On day 1, group A was exposed to the live scenario and group B was exposed to the virtual reality scenario, aiming to triage 10 victims. On day 2, all students attended a 2-h lecture on mass casualty triage, specifically the START triage method. On day 3, groups A and B were crossed over. The groups' abilities to perform mass casualty triage in terms of triage accuracy, intervention correctness, and speed in the scenarios were assessed. Triage and lifesaving treatment scores were assessed equally by virtual reality and live simulation on day 1 and on day 3. Both simulation methodologies detected an improvement in triage accuracy and treatment correctness from day 1 to day 3 (P<0.001). The time to complete each scenario and its decrease from day 1 to day 3 were detected equally in the two groups (P<0.05). Virtual reality simulation proved to be a valuable tool, equivalent to live simulation, to test medical students' abilities to perform mass casualty triage and to detect improvement in such skills.

Multigeneration Cross-Contamination of Mail with Bacillus anthracis Spores

PubMed Central

Edmonds, Jason; Lindquist, H. D. Alan; Sabol, Jonathan; Martinez, Kenneth; Shadomy, Sean; Cymet, Tyler; Emanuel, Peter

2016-01-01

The release of biological agents, including those which could be used in biowarfare or bioterrorism in large urban areas, has been a concern for governments for nearly three decades. Previous incidents from Sverdlosk and the postal anthrax attack of 2001 have raised questions on the mechanism of spread of Bacillus anthracis spores as an aerosol or contaminant. Prior studies have demonstrated that Bacillus atrophaeus is easily transferred through simulated mail handing, but no reports have demonstrated this ability with Bacillus anthracis spores, which have morphological differences that may affect adhesion properties between spore and formite. In this study, equipment developed to simulate interactions across three generations of envelopes subjected to tumbling and mixing was used to evaluate the potential for cross-contamination of B. anthracis spores in simulated mail handling. In these experiments, we found that the potential for cross-contamination through letter tumbling from one generation to the next varied between generations while the presence of a fluidizer had no statistical impact on the transfer of material. Likewise, the presence or absence of a fluidizer had no statistically significant impact on cross-contamination levels or reaerosolization from letter opening. PMID:27123934

Analysis of dead zone sources in a closed-loop fiber optic gyroscope.

PubMed

Chong, Kyoung-Ho; Choi, Woo-Seok; Chong, Kil-To

2016-01-01

Analysis of the dead zone is among the intensive studies in a closed-loop fiber optic gyroscope. In a dead zone, a gyroscope cannot detect any rotation and produces a zero bias. In this study, an analysis of dead zone sources is performed in simulation and experiments. In general, the problem is mainly due to electrical cross coupling and phase modulation drift. Electrical cross coupling is caused by interference between modulation voltage and the photodetector. The cross-coupled signal produces spurious gyro bias and leads to a dead zone if it is larger than the input rate. Phase modulation drift as another dead zone source is due to the electrode contamination, the piezoelectric effect of the LiNbO3 substrate, or to organic fouling. This modulation drift lasts for a short or long period of time like a lead-lag filter response and produces gyro bias error, noise spikes, or dead zone. For a more detailed analysis, the cross-coupling effect and modulation phase drift are modeled as a filter and are simulated in both the open-loop and closed-loop modes. The sources of dead zone are more clearly analyzed in the simulation and experimental results.

DIF Analysis with Multilevel Data: A Simulation Study Using the Latent Variable Approach

ERIC Educational Resources Information Center

Jin, Ying; Eason, Hershel

2016-01-01

The effects of mean ability difference (MAD) and short tests on the performance of various DIF methods have been studied extensively in previous simulation studies. Their effects, however, have not been studied under multilevel data structure. MAD was frequently observed in large-scale cross-country comparison studies where the primary sampling…

The practical Pomeron for high energy proton collimation

NASA Astrophysics Data System (ADS)

Appleby, R. B.; Barlow, R. J.; Molson, J. G.; Serluca, M.; Toader, A.

2016-10-01

We present a model which describes proton scattering data from ISR to Tevatron energies, and which can be applied to collimation in high energy accelerators, such as the LHC and FCC. Collimators remove beam halo particles, so that they do not impinge on vulnerable regions of the machine, such as the superconducting magnets and the experimental areas. In simulating the effect of the collimator jaws it is crucial to model the scattering of protons at small momentum transfer t, as these protons can subsequently survive several turns of the ring before being lost. At high energies these soft processes are well described by Pomeron exchange models. We study the behaviour of elastic and single-diffractive dissociation cross sections over a wide range of energy, and show that the model can be used as a global description of the wide variety of high energy elastic and diffractive data presently available. In particular it models low mass diffraction dissociation, where a rich resonance structure is present, and thus predicts the differential and integrated cross sections in the kinematical range appropriate to the LHC. We incorporate the physics of this model into the beam tracking code MERLIN and use it to simulate the resulting loss maps of the beam halo lost in the collimators in the LHC.

An approach for accurate simulation of liquid mixing in a T-shaped micromixer.

PubMed

Matsunaga, Takuya; Lee, Ho-Joon; Nishino, Koichi

2013-04-21

In this paper, we propose a new computational method for efficient evaluation of the fluid mixing behaviour in a T-shaped micromixer with a rectangular cross section at high Schmidt number under steady state conditions. Our approach enables a low-cost high-quality simulation based on tracking of fluid particles for convective fluid mixing and posterior solving of a model of the species equation for molecular diffusion. The examined parameter range is Re = 1.33 × 10(-2) to 240 at Sc = 3600. The proposed method is shown to simulate well the mixing quality even in the engulfment regime, where the ordinary grid-based simulation is not able to obtain accurate solutions with affordable mesh sizes due to the numerical diffusion at high Sc. The obtained results agree well with a backward random-walk Monte Carlo simulation, by which the accuracy of the proposed method is verified. For further investigation of the characteristics of the proposed method, the Sc dependency is examined in a wide range of Sc from 10 to 3600 at Re = 200. The study reveals that the model discrepancy error emerges more significantly in the concentration distribution at lower Sc, while the resulting mixing quality is accurate over the entire range.

Using the power balance model to simulate cross-country skiing on varying terrain.

PubMed

Moxnes, John F; Sandbakk, Oyvind; Hausken, Kjell

2014-01-01

The current study adapts the power balance model to simulate cross-country skiing on varying terrain. We assumed that the skier's locomotive power at a self-chosen pace is a function of speed, which is impacted by friction, incline, air drag, and mass. An elite male skier's position along the track during ski skating was simulated and compared with his experimental data. As input values in the model, air drag and friction were estimated from the literature based on the skier's mass, snow conditions, and speed. We regard the fit as good, since the difference in racing time between simulations and measurements was 2 seconds of the 815 seconds racing time, with acceptable fit both in uphill and downhill terrain. Using this model, we estimated the influence of changes in various factors such as air drag, friction, and body mass on performance. In conclusion, the power balance model with locomotive power as a function of speed was found to be a valid tool for analyzing performance in cross-country skiing.

Reynolds number invariance of the structure inclination angle in wall turbulence.

PubMed

Marusic, Ivan; Heuer, Weston D C

2007-09-14

Cross correlations of the fluctuating wall-shear stress and the streamwise velocity in the logarithmic region of turbulent boundary layers are reported over 3 orders of magnitude change in Reynolds number. These results are obtained using hot-film and hot-wire anemometry in a wind tunnel facility, and sonic anemometers and a purpose-built wall-shear stress sensor in the near-neutral atmospheric surface layer on the salt flats of Utah's western desert. The direct measurement of fluctuating wall-shear stress in the atmospheric surface layer has not been available before. Structure inclination angles are inferred from the cross correlation results and are found to be invariant over the large range of Reynolds number. The findings justify the prior use of low Reynolds number experiments for obtaining structure angles for near-wall models in the large-eddy simulation of atmospheric surface layer flows.

Microscopic theory of topologically entangled fluids of rigid macromolecules

NASA Astrophysics Data System (ADS)

Sussman, Daniel M.; Schweizer, Kenneth S.

2011-06-01

We present a first-principles theory for the slow dynamics of a fluid of entangling rigid crosses of zero excluded volume based on a generalization of the dynamic mean-field approach of Szamel for infinitely thin nonrotating rods. The latter theory exactly includes topological constraints at the two-body collision level and self-consistently renormalizes an effective diffusion tensor to account for many-body effects. Remarkably, it predicts scaling laws consistent with the phenomenological reptation-tube predictions of Doi and Edwards for the long-time diffusion and the localization length in the heavily entangled limit. We generalize this approach to a different macromolecular architecture, infinitely thin three-dimensional crosses, and also extend the range of densities over which a dynamic localization length can be calculated for rods. Ideal gases of nonrotating crosses have recently received attention in computer simulations and are relevant as a simple model of both a strong-glass former and entangling star-branched polymers. Comparisons of our theory with these simulations reveal reasonable agreement for the magnitude and reduced density dependence of the localization length and also the self-diffusion constant if the consequences of local density fluctuations are taken into account.

Ultra-wideband circular-polarization converter with micro-split Jerusalem-cross metasurfaces

NASA Astrophysics Data System (ADS)

Gao, Xi; Yu, Xing-Yang; Cao, Wei-Ping; Jiang, Yan-Nan; Yu, Xin-Hua

2016-12-01

An ultrathin micro-split Jerusalem-cross metasurface is proposed in this paper, which can efficiently convert the linear polarization of electromagnetic (EM) wave into the circular polarization in ultra-wideband. By symmetrically employing two micro-splits on the horizontal arm (in the x direction) of the Jerusalem-cross structure, the bandwidth of the proposed device is significantly extended. Both simulated and experimental results show that the proposed metasurface is able to convert linearly polarized waves into circularly polarized waves in a frequency range from 12.4 GHz to 21 GHz, with an axis ratio better than 1 dB. The simulated results also show that such a broadband and high-performance are maintained over a wide range of incident angle. The presented polarization converter can be used in a number of areas, such as spectroscopy and wireless communications. Project supported by the National Natural Science Foundation of China (Grant Nos. 61461016 and 61661012), the Natural Science Foundation of Guangxi Zhuang Autonomous Region, China (Grant Nos. 2014GXNSFAA118366, 2014GXNSFAA118283, and 2015jjBB7002), and the Innovation Project of Graduate Education of Guilin University of Electronic Technology, China (Grant No. 2016YJCX82).

An Inexpensive Method to Simulate a Monohybrid Cross Using Wild-Type Zebrafish ("Danio rerio")

ERIC Educational Resources Information Center

Lassiter, Christopher S.

2010-01-01

Monohybrid crosses are taught in biology labs across the country using peas and corn. Students studying monohybrid crosses using zebrafish ("Danio rerio") would encounter a new model organism, and those interested in human or veterinary medicine would have increased interest. To this end, our college has implemented a laboratory exercise at the…

Micro-wear features on unique 100-Mrad cups: two retrieved cups compared to hip simulator wear study.

PubMed

Yamamoto, Kengo; Masaoka, Toshinori; Manaka, Masakazu; Oonishi, Hironobu; Clarke, Ian; Shoji, Hiromu; Kawanabe, Keiichi; Imakiire, Atsuhiro

2004-04-01

We studied the micro-wear phenomena of unique, extensively cross-linked polyethylene cups (cross-linked with 1,000 kGy-irradiation) that had been used briefly in Japan. Two retrievals (at 15 years) came from the Japanese "SOM" hip system (implanted 1971-78). These were compared to a set of 0 kGy and 500-1,500 kGy cups run in our hip simulator. The polyethylene cups that had not been cross-linked had the greatest wear. The worn areas had a burnished appearance and were clearly separated from the unworn region by a distinct ridge-line. The worn areas had lost all machine tracks, showed a large amount of UHMWPE 'flow', and long PE fibrils. The associated surface rippling was degraded. These features were considered synonymous with severe polyethylene wear. In contrast, the worn areas in the very cross-linked cups had a visibly matte surface and no ridge-line. Micro-examination showed that the machine tracks were still present. Ripple formations were less obvious than in the cups that were not cross-linked, polyethylene surface fibrils were scarcer and all the fibrils were much smaller than in the cups that were not crosslinked. Our two retrieved cups and the simulator cups confirmed the greater wear-resistance of very cross-linked polyethylene. It should also be noted that the SOM cup design and processing were unique and differed greatly from that of modern polyethylene cups.

Brownian dynamics simulations of insulin microspheres formation

NASA Astrophysics Data System (ADS)

Li, Wei; Chakrabarti, Amit; Gunton, James

2010-03-01

Recent experiments have indicated a novel, aqueous process of microsphere insulin fabrication based on controlled phase separation of protein from water-soluble polymers. We investigate the insulin microsphere crystal formation from insulin-PEG-water systems via 3D Brownian Dynamics simulations. We use the two component Asakura-Oosawa model to simulate the kinetics of this colloid polymer mixture. We first perform a deep quench below the liquid-crystal boundary that leads to fractal formation. We next heat the system to obtain a break-up of the fractal clusters and subsequently cool the system to obtain a spherical aggregation of droplets with a relatively narrow size distribution. We analyze the structure factor S(q) to identify the cluster dimension. S(q) crosses over from a power law q dependence of 1.8 (in agreement with DLCA) to 4 as q increases, which shows the evolution from fractal to spherical clusters. By studying the bond-order parameters, we find the phase transition from liquid-like droplets to crystals which exhibit local HCP and FCC order. This work is supported by grants from the NSF and Mathers Foundation.

The Sensitivity of Numerical Simulations of Cloud-Topped Boundary Layers to Cross-Grid Flow

NASA Astrophysics Data System (ADS)

Wyant, Matthew C.; Bretherton, Christopher S.; Blossey, Peter N.

2018-02-01

In mesoscale and global atmospheric simulations with large horizontal domains, strong horizontal flow across the grid is often unavoidable, but its effects on cloud-topped boundary layers have received comparatively little study. Here the effects of cross-grid flow on large-eddy simulations of stratocumulus and trade-cumulus marine boundary layers are studied across a range of grid resolutions (horizontal × vertical) between 500 m × 20 m and 35 m × 5 m. Three cases are simulated: DYCOMS nocturnal stratocumulus, BOMEX trade cumulus, and a GCSS stratocumulus-to-trade cumulus case. Simulations are performed with a stationary grid (with 4-8 m s-1 horizontal winds blowing through the cyclic domain) and a moving grid (equivalent to subtracting off a fixed vertically uniform horizontal wind) approximately matching the mean boundary-layer wind speed. For stratocumulus clouds, cross-grid flow produces two primary effects on stratocumulus clouds: a filtering of fine-scale resolved turbulent eddies, which reduces stratocumulus cloud-top entrainment, and a vertical broadening of the stratocumulus-top inversion which enhances cloud-top entrainment. With a coarse (20 m) vertical grid, the former effect dominates and leads to strong increases in cloud cover and LWP, especially as horizontal resolution is coarsened. With a finer (5 m) vertical grid, the latter effect is stronger and leads to small reductions in cloud cover and LWP. For the BOMEX trade cumulus case, cross-grid flow tends to produce fewer and larger clouds with higher LWP, especially for coarser vertical grid spacing. The results presented are robust to choice of scalar advection scheme and Courant number.

Wind-Tunnel Tests of a Portion of a PV-2 Helicopter Rotor Blade

NASA Technical Reports Server (NTRS)

Kemp, William B., Jr.

1945-01-01

A portion of a PV-2 helicopter rotor blade has been tested in the 6- by 6-foot test section of the Langley stability tunnel to determine if the aerodynamic characteristics were seriously affected by cross flow or fabric distortion. The outer portion of the blade was tested as a reflection plane model pivoted about the tunnel wall to obtain various angles of cross flow over the blade. Because the tunnel wall acts as a plane of sytry, the measured aerodynamic characteristics correspond to those of an airfoil having various angles of sweepforward and sweepback. Tests were made with the vents on the lower surface open and also with the vents sealed and the internal pressure held at -20 inches of water producing an internal pressure coefficient of -1.059. The change in contour resulting from the range of internal pressures used had very little effect on the aerodynamic characteristics of the blade. The test methods were considered to simulate inadequately the flow conditions over the rotor blade because the effects of cross flow were limited to conditions corresponding to sweep of the blade. The results indicated that this type of cross flow had only minor effects on the aerodynamic characteristics of the blade. It is believed, therefore, that future tests to determine the effects on the aerodynamic characteristics of cross flow should utilize complete rotors.

Probing the Intergalactic Medium with Ly α and 21 cm Fluctuations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heneka, Caroline; Cooray, Asantha; Feng, Chang

2017-10-10

We study 21 cm and Ly α fluctuations, as well as H α , while distinguishing between Ly α emission of galactic, diffuse, and scattered intergalactic medium (IGM) origin. Cross-correlation information about the state of the IGM is obtained, testing neutral versus ionized medium cases with different tracers in a seminumerical simulation setup. In order to pave the way toward constraints on reionization history and modeling beyond power spectrum information, we explore parameter dependencies of the cross-power signal between 21 cm and Ly α , which displays a characteristic morphology and a turnover from negative to positive correlation at scalesmore » of a couple Mpc{sup −1}. In a proof of concept for the extraction of further information on the state of the IGM using different tracers, we demonstrate the use of the 21 cm and H α cross-correlation signal to determine the relative strength of galactic and IGM emission in Ly α . We conclude by showing the detectability of the 21 cm and Ly α cross-correlation signal over more than one decade in scale at high signal-to-noise ratio for upcoming probes like SKA and the proposed all-sky intensity mapping satellites SPHEREx and CDIM, while also including the Ly α damping tail and 21 cm foreground avoidance in the modeling.« less

Influence of the noise sources motion on the estimated Green's functions from ambient noise cross-correlations.

PubMed

Sabra, Karim G

2010-06-01

It has been demonstrated theoretically and experimentally that an estimate of the Green's function between two receivers can be obtained by cross-correlating acoustic (or elastic) ambient noise recorded at these two receivers. Coherent wavefronts emerge from the noise cross-correlation time function due to the accumulated contributions over time from noise sources whose propagation path pass through both receivers. Previous theoretical studies of the performance of this passive imaging technique have assumed that no relative motion between noise sources and receivers occurs. In this article, the influence of noise sources motion (e.g., aircraft or ship) on this passive imaging technique was investigated theoretically in free space, using a stationary phase approximation, for stationary receivers. The theoretical results were extended to more complex environments, in the high-frequency regime, using first-order expansions of the Green's function. Although sources motion typically degrades the performance of wideband coherent processing schemes, such as time-delay beamforming, it was found that the Green's function estimated from ambient noise cross-correlations are not expected to be significantly affected by the Doppler effect, even for supersonic sources. Numerical Monte-Carlo simulations were conducted to confirm these theoretical predictions for both cases of subsonic and supersonic moving sources.

Multimodal Pilot Behavior in Multi-Axis Tracking Tasks with Time-Varying Motion Cueing Gains

NASA Technical Reports Server (NTRS)

Zaal, P. M. T; Pool, D. M.

2014-01-01

In a large number of motion-base simulators, adaptive motion filters are utilized to maximize the use of the available motion envelope of the motion system. However, not much is known about how the time-varying characteristics of such adaptive filters affect pilots when performing manual aircraft control. This paper presents the results of a study investigating the effects of time-varying motion filter gains on pilot control behavior and performance. An experiment was performed in a motion-base simulator where participants performed a simultaneous roll and pitch tracking task, while the roll and/or pitch motion filter gains changed over time. Results indicate that performance increases over time with increasing motion gains. This increase is a result of a time-varying adaptation of pilots' equalization dynamics, characterized by increased visual and motion response gains and decreased visual lead time constants. Opposite trends are found for decreasing motion filter gains. Even though the trends in both controlled axes are found to be largely the same, effects are less significant in roll. In addition, results indicate minor cross-coupling effects between pitch and roll, where a cueing variation in one axis affects the behavior adopted in the other axis.

PHYSICAL MODELING OF CONTRACTED FLOW.

USGS Publications Warehouse

Lee, Jonathan K.

1987-01-01

Experiments on steady flow over uniform grass roughness through centered single-opening contractions were conducted in the Flood Plain Simulation Facility at the U. S. Geological Survey's Gulf Coast Hydroscience Center near Bay St. Louis, Miss. The experimental series was designed to provide data for calibrating and verifying two-dimensional, vertically averaged surface-water flow models used to simulate flow through openings in highway embankments across inundated flood plains. Water-surface elevations, point velocities, and vertical velocity profiles were obtained at selected locations for design discharges ranging from 50 to 210 cfs. Examples of observed water-surface elevations and velocity magnitudes at basin cross-sections are presented.

LANL Summer 2016 Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mendoza, Paul Michael

The Monte Carlo N-Particle (MCNP) transport code developed at Los Alamos National Laboratory (LANL) utilizes nuclear cross-section data in a compact ENDF (ACE) format. The accuracy of MCNP calculations depends on the accuracy of nuclear ACE data tables, which depends on the accuracy of the original ENDF files. There are some noticeable differences in ENDF files from one generation to the next, even among the more common fissile materials. As the next generation of ENDF files is being prepared, several software tools were developed to simulate a large number of benchmarks in MCNP (over 1000), collect data from these simulations,more » and visually represent the results.« less

The impact of population aging on medical expenses: A big data study based on the life table.

PubMed

Wang, Changying; Li, Fen; Wang, Linan; Zhou, Wentao; Zhu, Bifan; Zhang, Xiaoxi; Ding, Lingling; He, Zhimin; Song, Peipei; Jin, Chunlin

2018-01-09

This study shed light on the amount and structure of utilization and medical expenses on Shanghai permanent residents based on big data, simulated lifetime medical expenses through combining of expenses data and life table model, and explored the dynamic pattern of aging on medical expenditures. 5 years were taken as the class interval, the study collected and did the descriptive analysis on the medical services utilization and medical expenses information for all ages of Shanghai permanent residents in 2015, simulated lifetime medical expenses by using current life table and cross-section expenditure data. The results showed that in 2015, outpatient and emergency visits per capita in the elderly group (aged 60 and over) was 4.1 and 4.5 times higher than the childhood group (aged 1-14), and the youth and adult group (aged 15-59); hospitalization per capita in the elderly group was 3.0 and 3.5 times higher than the childhood group, and the youth and adult group. People survived in the 60-64 years group, their expected whole medical expenses (105,447 purchasing power parity Dollar) in the rest of their lives accounted for 75.6% of their lifetime. A similar study in Michigan, US showed that the expenses of the population aged 65 and over accounted for 1/2 of lifetime medical expenses, which is much lower than Shanghai. The medical expenses of the advanced elderly group (aged 80 and over) accounted for 38.8% of their lifetime expenses, including 38.2% in outpatient and emergency, and 39.5% in hospitalization, which was slightly higher than outpatient and emergency. There is room to economize in medical expenditures of the elderly people in Shanghai, especially controlling hospitalization expenses is the key to saving medical expenses of elderly people aged over 80 and over.

Modelling how drivers respond to a bicyclist crossing their path at an intersection: How do test track and driving simulator compare?

PubMed

Boda, Christian-Nils; Dozza, Marco; Bohman, Katarina; Thalya, Prateek; Larsson, Annika; Lubbe, Nils

2018-02-01

Bicyclist fatalities are a great concern in the European Union. Most of them are due to crashes between motorized vehicles and bicyclists at unsignalised intersections. Different countermeasures are currently being developed and implemented in order to save lives. One type of countermeasure, active safety systems, requires a deep understanding of driver behaviour to be effective without being annoying. The current study provides new knowledge about driver behaviour which can inform assessment programmes for active safety systems such as Euro NCAP. This study investigated how drivers responded to bicyclists crossing their path at an intersection. The influences of car speed and cyclist speed on the driver response process were assessed for three different crossing configurations. The same experimental protocol was tested in a fixed-base driving simulator and on a test track. A virtual model of the test track was used in the driving simulator to keep the protocol as consistent as possible across testing environments. Results show that neither car speed nor bicycle speed directly influenced the response process. The crossing configuration did not directly influence the braking response process either, but it did influence the strategy chosen by the drivers to approach the intersection. The point in time when the bicycle became visible (which depended on the car speed, the bicycle speed, and the crossing configuration) and the crossing configuration alone had the largest effects on the driver response process. Dissimilarities between test-track and driving-simulator studies were found; however, there were also interesting similarities, especially in relation to the driver braking behaviour. Drivers followed the same strategy to initiate braking, independent of the test environment. On the other hand, the test environment affected participants' strategies for releasing the gas pedal and regulating deceleration. Finally, a mathematical model, based on both experiments, is proposed to characterize driver braking behaviour in response to bicyclists crossing at intersections. This model has direct implications on what variables an in-vehicle safety system should consider and how tests in evaluation programs should be designed. Copyright © 2017 Elsevier Ltd. All rights reserved.

Perspective view over the Grand Canyon, Arizona

NASA Image and Video Library

2001-10-22

This simulated true color perspective view over the Grand Canyon was created from Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) data acquired on May 12, 2000. The Grand Canyon Village is in the lower foreground; the Bright Angel Trail crosses the Tonto Platform, before dropping down to the Colorado Village and then to the Phantom Ranch (green area across the river). Bright Angel Canyon and the North Rim dominate the view. At the top center of the image the dark blue area with light blue haze is an active forest fire. http://photojournal.jpl.nasa.gov/catalog/PIA01908

Almond Test Body. [for microwave anechoic chambers

NASA Technical Reports Server (NTRS)

Dominek, Allen K. (Inventor); Wood, Richard M. (Inventor); Gilreath, Melvin C. (Inventor)

1989-01-01

The invention is an almond shaped test body for use in measuring the performance characteristics of microwave anechoic chambers and for use as a support for components undergoing radar cross-section measurements. The novel aspect of this invention is its shape, which produces a large dynamic scattered field over large angular regions making the almond valuable for verifying the performance of microwave anechoic chambers. As a component mount, the almond exhibits a low return that does not perturb the measurement of the component and it simulates the backscatter characteristics of the component as if over an infinite ground plane.

Evaluation of the effects of school zone signs and markings on speed reduction: a driving simulator study.

PubMed

Zhao, Xiaohua; Li, Jiahui; Ma, Jianming; Rong, Jian

2016-01-01

Traffic control devices are one of the most significant factors affecting driving behavior. In China, there is a lack of installation guidelines or standards for traffic control devices in school zones. In addition, little research has been done to examine the effects of traffic control devices on driving behavior. Few guidelines have been established for implementing traffic control devices in school zones in China. This research conducted a driving simulator experiment to assess the effects of school zone signs and markings for two different types of schools. The efficiency of these traffic control devices was evaluated using four variables derived from the driving simulation, including average speed, relative speed difference, standard deviation of acceleration, and 85th percentile speed. Results showed that traffic control devices such as the Flashing Beacon and School Crossing Ahead Warning Assembly, the Reduce Speed and School Crossing Warning Assembly, and the School Crossing Ahead Pavement Markings were recommended for school zones adjacent to a major multilane roadway, which is characterized by a median strip, high traffic volume, high-speed traffic and the presence of pedestrian crossing signals. The School Crossing Ahead Pavement Markings were recommended for school zones on a minor two-lane roadway, which is characterized by low traffic volume, low speed, and no pedestrian crossing signals.

Simulating Cross-Language Priming with a Dynamic Computational Model of the Lexicon

ERIC Educational Resources Information Center

Zhao, Xiaowei; Li, Ping

2013-01-01

Cross-language priming is a widely used experimental paradigm in psycholinguistics to study how bilinguals' two languages are represented and organized. Researchers have observed a number of interesting patterns from the priming effects of both translation equivalents and semantically related word pairs across languages. In this study, we…

An effective approach for road asset management through the FDTD simulation of the GPR signal

NASA Astrophysics Data System (ADS)

Benedetto, Andrea; Pajewski, Lara; Adabi, Saba; Kusayanagi, Wolfgang; Tosti, Fabio

2015-04-01

Ground-penetrating radar is a non-destructive tool widely used in many fields of application including pavement engineering surveys. Over the last decade, the need for further breakthroughs capable to assist end-users and practitioners as decision-support systems in more effective road asset management is increasing. In more details and despite the high potential and the consolidated results obtained over years by this non-destructive tool, pavement distress manuals are still based on visual inspections, so that only the effects and not the causes of faults are generally taken into account. In this framework, the use of simulation can represent an effective solution for supporting engineers and decision-makers in understanding the deep responses of both revealed and unrevealed damages. In this study, the potential of using finite-difference time-domain simulation of the ground-penetrating radar signal is analyzed by simulating several types of flexible pavement at different center frequencies of investigation typically used for road surveys. For these purposes, the numerical simulator GprMax2D, implementing the finite-difference time-domain method, was used, proving to be a highly effective tool for detecting road faults. In more details, comparisons with simplified undisturbed modelled pavement sections were carried out showing promising agreements with theoretical expectations, and good chances for detecting the shape of damages are demonstrated. Therefore, electromagnetic modelling has proved to represent a valuable support system in diagnosing the causes of damages, even for early or unrevealed faults. Further perspectives of this research will be focused on the modelling of more complex scenarios capable to represent more accurately the real boundary conditions of road cross-sections. Acknowledgements - This work has benefited from networking activities carried out within the EU funded COST Action TU1208 "Civil Engineering Applications of Ground Penetrating Radar".

Broadband and wide-angle RCS reduction using a 2-bit coding ultrathin metasurface at terahertz frequencies

PubMed Central

Liang, Lanju; Wei, Minggui; Yan, Xin; Wei, Dequan; Liang, Dachuan; Han, Jiaguang; Ding, Xin; Zhang, GaoYa; Yao, Jianquan

2016-01-01

A novel broadband and wide-angle 2-bit coding metasurface for radar cross section (RCS) reduction is proposed and characterized at terahertz (THz) frequencies. The ultrathin metasurface is composed of four digital elements based on a metallic double cross line structure. The reflection phase difference of neighboring elements is approximately 90° over a broadband THz frequency. The mechanism of RCS reduction is achieved by optimizing the coding element sequences, which redirects the electromagnetic energies to all directions in broad frequencies. An RCS reduction of less than −10 dB bandwidth from 0.7 THz to 1.3 THz is achieved in the experimental and numerical simulations. The simulation results also show that broadband RCS reduction can be achieved at an incident angle below 60° for TE and TM polarizations under flat and curve coding metasurfaces. These results open a new approach to flexibly control THz waves and may offer widespread applications for novel THz devices. PMID:27982089

Broadband and wide-angle RCS reduction using a 2-bit coding ultrathin metasurface at terahertz frequencies.

PubMed

Liang, Lanju; Wei, Minggui; Yan, Xin; Wei, Dequan; Liang, Dachuan; Han, Jiaguang; Ding, Xin; Zhang, GaoYa; Yao, Jianquan

2016-12-16

A novel broadband and wide-angle 2-bit coding metasurface for radar cross section (RCS) reduction is proposed and characterized at terahertz (THz) frequencies. The ultrathin metasurface is composed of four digital elements based on a metallic double cross line structure. The reflection phase difference of neighboring elements is approximately 90° over a broadband THz frequency. The mechanism of RCS reduction is achieved by optimizing the coding element sequences, which redirects the electromagnetic energies to all directions in broad frequencies. An RCS reduction of less than -10 dB bandwidth from 0.7 THz to 1.3 THz is achieved in the experimental and numerical simulations. The simulation results also show that broadband RCS reduction can be achieved at an incident angle below 60° for TE and TM polarizations under flat and curve coding metasurfaces. These results open a new approach to flexibly control THz waves and may offer widespread applications for novel THz devices.

Sources and pathways of the upscale effects on the Southern Hemisphere jet in MPAS-CAM4 variable-resolution simulations

DOE PAGES

Sakaguchi, Koichi; Lu, Jian; Leung, L. Ruby; ...

2016-10-22

Impacts of regional grid refinement on large-scale circulations (“upscale effects”) were detected in a previous study that used the Model for Prediction Across Scales-Atmosphere coupled to the physics parameterizations of the Community Atmosphere Model version 4. The strongest upscale effect was identified in the Southern Hemisphere jet during austral winter. This study examines the detailed underlying processes by comparing two simulations at quasi-uniform resolutions of 30 and 120 km to three variable-resolution simulations in which the horizontal grids are regionally refined to 30 km in North America, South America, or Asia from 120 km elsewhere. In all the variable-resolution simulations,more » precipitation increases in convective areas inside the high-resolution domains, as in the reference quasi-uniform high-resolution simulation. With grid refinement encompassing the tropical Americas, the increased condensational heating expands the local divergent circulations (Hadley cell) meridionally such that their descending branch is shifted poleward, which also pushes the baroclinically unstable regions, momentum flux convergence, and the eddy-driven jet poleward. This teleconnection pathway is not found in the reference high-resolution simulation due to a strong resolution sensitivity of cloud radiative forcing that dominates the aforementioned teleconnection signals. The regional refinement over Asia enhances Rossby wave sources and strengthens the upper level southerly flow, both facilitating the cross-equatorial propagation of stationary waves. Evidence indicates that this teleconnection pathway is also found in the reference high-resolution simulation. Lastly, the result underlines the intricate diagnoses needed to understand the upscale effects in global variable-resolution simulations, with implications for science investigations using the computationally efficient modeling framework.« less

Sources and pathways of the upscale effects on the Southern Hemisphere jet in MPAS-CAM4 variable-resolution simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sakaguchi, Koichi; Lu, Jian; Leung, L. Ruby

Impacts of regional grid refinement on large-scale circulations (“upscale effects”) were detected in a previous study that used the Model for Prediction Across Scales-Atmosphere coupled to the physics parameterizations of the Community Atmosphere Model version 4. The strongest upscale effect was identified in the Southern Hemisphere jet during austral winter. This study examines the detailed underlying processes by comparing two simulations at quasi-uniform resolutions of 30 and 120 km to three variable-resolution simulations in which the horizontal grids are regionally refined to 30 km in North America, South America, or Asia from 120 km elsewhere. In all the variable-resolution simulations,more » precipitation increases in convective areas inside the high-resolution domains, as in the reference quasi-uniform high-resolution simulation. With grid refinement encompassing the tropical Americas, the increased condensational heating expands the local divergent circulations (Hadley cell) meridionally such that their descending branch is shifted poleward, which also pushes the baroclinically unstable regions, momentum flux convergence, and the eddy-driven jet poleward. This teleconnection pathway is not found in the reference high-resolution simulation due to a strong resolution sensitivity of cloud radiative forcing that dominates the aforementioned teleconnection signals. The regional refinement over Asia enhances Rossby wave sources and strengthens the upper level southerly flow, both facilitating the cross-equatorial propagation of stationary waves. Evidence indicates that this teleconnection pathway is also found in the reference high-resolution simulation. Lastly, the result underlines the intricate diagnoses needed to understand the upscale effects in global variable-resolution simulations, with implications for science investigations using the computationally efficient modeling framework.« less

An assessment of coupling algorithms for nuclear reactor core physics simulations

DOE PAGES

Hamilton, Steven; Berrill, Mark; Clarno, Kevin; ...

2016-04-01

This paper evaluates the performance of multiphysics coupling algorithms applied to a light water nuclear reactor core simulation. The simulation couples the k-eigenvalue form of the neutron transport equation with heat conduction and subchannel flow equations. We compare Picard iteration (block Gauss–Seidel) to Anderson acceleration and multiple variants of preconditioned Jacobian-free Newton–Krylov (JFNK). The performance of the methods are evaluated over a range of energy group structures and core power levels. A novel physics-based approximation to a Jacobian-vector product has been developed to mitigate the impact of expensive on-line cross section processing steps. Furthermore, numerical simulations demonstrating the efficiency ofmore » JFNK and Anderson acceleration relative to standard Picard iteration are performed on a 3D model of a nuclear fuel assembly. Both criticality (k-eigenvalue) and critical boron search problems are considered.« less

An assessment of coupling algorithms for nuclear reactor core physics simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hamilton, Steven; Berrill, Mark; Clarno, Kevin

This paper evaluates the performance of multiphysics coupling algorithms applied to a light water nuclear reactor core simulation. The simulation couples the k-eigenvalue form of the neutron transport equation with heat conduction and subchannel flow equations. We compare Picard iteration (block Gauss–Seidel) to Anderson acceleration and multiple variants of preconditioned Jacobian-free Newton–Krylov (JFNK). The performance of the methods are evaluated over a range of energy group structures and core power levels. A novel physics-based approximation to a Jacobian-vector product has been developed to mitigate the impact of expensive on-line cross section processing steps. Furthermore, numerical simulations demonstrating the efficiency ofmore » JFNK and Anderson acceleration relative to standard Picard iteration are performed on a 3D model of a nuclear fuel assembly. Both criticality (k-eigenvalue) and critical boron search problems are considered.« less

An assessment of coupling algorithms for nuclear reactor core physics simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hamilton, Steven, E-mail: hamiltonsp@ornl.gov; Berrill, Mark, E-mail: berrillma@ornl.gov; Clarno, Kevin, E-mail: clarnokt@ornl.gov

This paper evaluates the performance of multiphysics coupling algorithms applied to a light water nuclear reactor core simulation. The simulation couples the k-eigenvalue form of the neutron transport equation with heat conduction and subchannel flow equations. We compare Picard iteration (block Gauss–Seidel) to Anderson acceleration and multiple variants of preconditioned Jacobian-free Newton–Krylov (JFNK). The performance of the methods are evaluated over a range of energy group structures and core power levels. A novel physics-based approximation to a Jacobian-vector product has been developed to mitigate the impact of expensive on-line cross section processing steps. Numerical simulations demonstrating the efficiency of JFNKmore » and Anderson acceleration relative to standard Picard iteration are performed on a 3D model of a nuclear fuel assembly. Both criticality (k-eigenvalue) and critical boron search problems are considered.« less

Potential effects of deepening the St. Johns River navigation channel on saltwater intrusion in the surficial aquifer system, Jacksonville, Florida

USGS Publications Warehouse

Bellino, Jason C.; Spechler, Rick M.

2013-01-01

The U.S. Army Corps of Engineers (USACE) has proposed dredging a 13-mile reach of the St. Johns River navigation channel in Jacksonville, Florida, deepening it to depths between 50 and 54 feet below North American Vertical Datum of 1988. The dredging operation will remove about 10 feet of sediments from the surficial aquifer system, including limestone in some locations. The limestone unit, which is in the lowermost part of the surficial aquifer system, supplies water to domestic wells in the Jacksonville area. Because of density-driven hydrodynamics of the St. Johns River, saline water from the Atlantic Ocean travels upstream as a saltwater “wedge” along the bottom of the channel, where the limestone is most likely to be exposed by the proposed dredging. A study was conducted to determine the potential effects of navigation channel deepening in the St. Johns River on salinity in the adjacent surficial aquifer system. Simulations were performed with each of four cross-sectional, variable-density groundwater-flow models, developed using SEAWAT, to simulate hypothetical changes in salinity in the surficial aquifer system as a result of dredging. The cross-sectional models were designed to incorporate a range of hydrogeologic conceptualizations to estimate the effect of uncertainty in hydrogeologic properties. The cross-sectional models developed in this study do not necessarily simulate actual projected conditions; instead, the models were used to examine the potential effects of deepening the navigation channel on saltwater intrusion in the surficial aquifer system under a range of plausible hypothetical conditions. Simulated results for modeled conditions indicate that dredging will have little to no effect on salinity variations in areas upstream of currently proposed dredging activities. Results also indicate little to no effect in any part of the surficial aquifer system along the cross section near River Mile 11 or in the water-table unit along the cross section near River Mile 8. Salinity increases of up to 4.0 parts per thousand (ppt) were indicated by the model incorporating hydrogeologic conceptualizations with both a semiconfining bed over the limestone unit and a preferential flow layer within the limestone along the cross section near River Mile 8. Simulated increases in salinity greater than 0.2 ppt in this area were generally limited to portions of the limestone unit within about 75 feet of the channel on the north side of the river. The potential for saltwater to move from the river channel to the surficial aquifer system is limited, but may be present in areas where the head gradient from the aquifer to the river is small or negative and the salinity of the river is sufficient to induce density-driven advective flow into the aquifer. In some areas, simulated increases in salinity were exacerbated by the presence of laterally extensive semiconfining beds in combination with a high-conductivity preferential flow zone in the limestone unit of the surficial aquifer system and an upgradient source of saline water, such as beneath the salt marshes near Fanning Island. The volume of groundwater pumped in these areas is estimated to be low; therefore, saltwater intrusion will not substantially affect regional water supply, although users of the surficial aquifer system east of Dames Point along the northern shore of the river could be affected. Proposed dredging operations pose no risk to salinization of the Floridan aquifer system; in the study area, the intermediate confining unit ranges in thickness from more than 300 to about 500 feet and provides sufficient hydraulic separation between the surficial and Floridan aquifer systems.

Injection in the lower stratosphere of biomass fire emissions followed by long-range transport: a MOZAIC case study

NASA Astrophysics Data System (ADS)

Cammas, J.-P.; Brioude, J.; Chaboureau, J.-P.; Duron, J.; Mari, C.; Mascart, P.; Nédélec, P.; Smit, H.; Pätz, H.-W.; Volz-Thomas, A.; Stohl, A.; Fromm, M.

2009-08-01

This paper analyses a stratospheric injection by deep convection of biomass fire emissions over North America (Alaska, Yukon and Northwest Territories) on 24 June 2004 and its long-range transport over the eastern coast of the United States and the eastern Atlantic. The case study is based on airborne MOZAIC observations of ozone, carbon monoxide, nitrogen oxides and water vapour during the crossing of the southernmost tip of an upper level trough over the Eastern Atlantic on 30 June and on a vertical profile over Washington DC on 30 June, and on lidar observations of aerosol backscattering at Madison (University of Wisconsin) on 28 June. Attribution of the observed CO plumes to the boreal fires is achieved by backward simulations with a Lagrangian particle dispersion model (FLEXPART). A simulation with the Meso-NH model for the source region shows that a boundary layer tracer, mimicking the boreal forest fire smoke, is lofted into the lowermost stratosphere (2-5 pvu layer) during the diurnal convective cycle at isentropic levels (above 335 K) corresponding to those of the downstream MOZAIC observations. It is shown that the order of magnitude of the time needed by the parameterized convective detrainment flux to fill the volume of a model mesh (20 km horizontal, 500 m vertical) above the tropopause with pure boundary layer air would be about 7.5 h, i.e. a time period compatible with the convective diurnal cycle. Over the area of interest, the maximum instantaneous detrainment fluxes deposited about 15 to 20% of the initial boundary layer tracer concentration at 335 K. According to the 275-ppbv carbon monoxide maximum mixing ratio observed by MOZAIC over Eastern Atlantic, such detrainment fluxes would be associated with a 1.4-1.8 ppmv carbon monoxide mixing ratio in the boundary layer over the source region.

Double differential cross sections for proton induced electron emission from molecular analogues of DNA constituents for energies in the Bragg peak region

NASA Astrophysics Data System (ADS)

Rudek, Benedikt; Bennett, Daniel; Bug, Marion U.; Wang, Mingjie; Baek, Woon Yong; Buhr, Ticia; Hilgers, Gerhard; Champion, Christophe; Rabus, Hans

2016-09-01

For track structure simulations in the Bragg peak region, measured electron emission cross sections of DNA constituents are required as input for developing parameterized model functions representing the scattering probabilities. In the present work, double differential cross sections were measured for the electron emission from vapor-phase pyrimidine, tetrahydrofuran, and trimethyl phosphate that are structural analogues to the base, the sugar, and the phosphate residue of the DNA, respectively. The range of proton energies was from 75 keV to 135 keV, the angles ranged from 15° to 135°, and the electron energies were measured from 10 eV to 200 eV. Single differential and total electron emission cross sections are derived by integration over angle and electron energy and compared to the semi-empirical Hansen-Kocbach-Stolterfoht (HKS) model and a quantum mechanical calculation employing the first Born approximation with corrected boundary conditions (CB1). The CB1 provides the best prediction of double and single differential cross section, while total cross sections can be fitted with semi-empirical models. The cross sections of the three samples are proportional to their total number of valence electrons.

Through-the-Wall Radar Simulations for Complex Room Imaging

DTIC Science & Technology

2010-05-01

obtained by combining images from different aspect angles. We demonstrate the advantages of using cross -polarization for detecting human targets. We...3. Numerical Results 6 3.1 SAR Images from a Ground-based Radar System ..........................................................6 3.2 Using Cross ...bottom row contains the cross -correlation between the images created by the two methods. ....................16 vi Acknowledgments This study

Research on the Cross Section Precision of High-strength Steel Tube with Rectangular Section in Rotary Draw Bending

NASA Astrophysics Data System (ADS)

Yang, Hongliang; Zhao, Hao; Xing, Zhongwen

2017-11-01

For the demand of energy conservation and security improvement, high-strength steel (HSS) is increasingly being used to produce safety related automotive components. However, cross-section distortion occurs easily in bending of HSS tube with rectangular section (RS), affecting the forming precision. HSS BR1500HS tube by rotary draw bending is taken as the study object and a description method of cross-section distortion is proposed in this paper. The influence on cross-section precision of geometric parameters including cross-section position, thickness of tube, bend radius etc. are studied by experiment. Besides, simulation of the rotary draw bending of HSS tube with rectangular section by ABAQUS are carried out and compared to the experiment. The results by simulation agree well with the experiment and show that the cross-section is approximately trapezoidal after distortion; the maximum of distortion exists at 45 ∼ 60° of the bending direction; and the absolute and relative distortion values increase with the decreasing of tube thickness or bending radius. Therefore, the results can provide a reference for the design of geometric parameters of HSS tube with rectangular section in rotary draw bending.

Baryon acoustic oscillations from the complete SDSS-III Lyα-quasar cross-correlation function at z = 2.4

DOE PAGES

du Mas des Bourboux, Helion; Le Goff, Jean-Marc; Blomqvist, Michael; ...

2017-08-08

We present a measurement of baryon acoustic oscillations (BAO) in the cross-correlation of quasars with the Lyα-forest flux-transmission at a mean redshift z = 2.40. The measurement uses the complete SDSS-III data sample: 168,889 forests and 234,367 quasars from the SDSS Data Release DR12. In addition to the statistical improvement on our previous study using DR11, we have implemented numerous improvements at the analysis level allowing a more accurate measurement of this cross-correlation. We also developed the first simulations of the cross-correlation allowing us to test different aspects of our data analysis and to search for potential systematic errors inmore » the determination of the BAO peak position. We measure the two ratios D H(z = 2.40)=r d = 9.01 ± 0.36 and D M(z = 2.40)=r d = 35.7 ±1.7, where the errors include marginalization over the non-linear velocity of quasars and the metal - quasar cross-correlation contribution, among other effects. These results are within 1.8σ of the prediction of the flat-ΛCDM model describing the observed CMB anisotropies.We combine this study with the Lyα-forest auto-correlation function (Bautista et al. 2017), yielding D H(z = 2.40)=r d = 8.94 ± 0.22 and D M(z = 2.40)=r d = 36.6 ± 1.2, within 2.3σ of the same flat-ΛCDM model.« less

Baryon acoustic oscillations from the complete SDSS-III Lyα-quasar cross-correlation function at z = 2.4

DOE Office of Scientific and Technical Information (OSTI.GOV)

du Mas des Bourboux, Helion; Le Goff, Jean-Marc; Blomqvist, Michael

We present a measurement of baryon acoustic oscillations (BAO) in the cross-correlation of quasars with the Lyα-forest flux-transmission at a mean redshift z = 2.40. The measurement uses the complete SDSS-III data sample: 168,889 forests and 234,367 quasars from the SDSS Data Release DR12. In addition to the statistical improvement on our previous study using DR11, we have implemented numerous improvements at the analysis level allowing a more accurate measurement of this cross-correlation. We also developed the first simulations of the cross-correlation allowing us to test different aspects of our data analysis and to search for potential systematic errors inmore » the determination of the BAO peak position. We measure the two ratios D H(z = 2.40)=r d = 9.01 ± 0.36 and D M(z = 2.40)=r d = 35.7 ±1.7, where the errors include marginalization over the non-linear velocity of quasars and the metal - quasar cross-correlation contribution, among other effects. These results are within 1.8σ of the prediction of the flat-ΛCDM model describing the observed CMB anisotropies.We combine this study with the Lyα-forest auto-correlation function (Bautista et al. 2017), yielding D H(z = 2.40)=r d = 8.94 ± 0.22 and D M(z = 2.40)=r d = 36.6 ± 1.2, within 2.3σ of the same flat-ΛCDM model.« less

Team-Based Simulation: Toward Developing Ethical Guidelines among American and Israeli Teachers in Jewish Schools

ERIC Educational Resources Information Center

Shapira-Lishchinsky, Orly; Glanz, Jeffrey; Shaer, Anat

2016-01-01

This study attempts to explore Israeli and American teachers' perceptions based on their ethical dilemmas in Jewish schools. A cross-national study was undertaken in Jewish schools, examining fifty teachers from Israel and fifty-one teachers from the United States. Designed with team-based simulations, this study revealed strong similarities…

A Predictive Model for Microbial Counts on Beaches where Intertidal Sand is the Primary Source

PubMed Central

Feng, Zhixuan; Reniers, Ad; Haus, Brian K.; Solo-Gabriele, Helena M.; Wang, John D.; Fleming, Lora E.

2015-01-01

Human health protection at recreational beaches requires accurate and timely information on microbiological conditions to issue advisories. The objective of this study was to develop a new numerical mass balance model for enterococci levels on nonpoint source beaches. The significant advantage of this model is its easy implementation, and it provides a detailed description of the cross-shore distribution of enterococci that is useful for beach management purposes. The performance of the balance model was evaluated by comparing predicted exceedances of a beach advisory threshold value to field data, and to a traditional regression model. Both the balance model and regression equation predicted approximately 70% the advisories correctly at the knee depth and over 90% at the waist depth. The balance model has the advantage over the regression equation in its ability to simulate spatiotemporal variations of microbial levels, and it is recommended for making more informed management decisions. PMID:25840869

Trans-Pacific yellow sand transport observed in April 1998: A numerical simulation

NASA Astrophysics Data System (ADS)

Uno, Itsushi; Amano, Hiroyasu; Emori, Seita; Kinoshita, Kisei; Matsui, Ichiro; Sugimoto, Nobuo

2001-08-01

A yellow sand transport episode from the Asian continent to Japan and North America which occurred in April 1998 is simulated. A new on-line dust tracer model coupled with a regional-scale meteorological model is developed and applied to this dust storm episode. The results for two large dust events that started during April 14-15 and 19-20, 1998, have been analyzed and discussed. The first dust storm was trapped in a cutoff vortex developed over the China plain. A modeled 3-D structure of dust associated with this cutoff vortex agreed with an observed time-height cross section of dust concentration. Results show that the strong subsidence at the backside of the vortex restricted the dust layer below 3 km level. Model analysis revealed that the second dust event that started during April 19-20 over inland China was the origin of a dust episode reported over North America. The trans-Pacific dust transport simulation successfully showed the dust onset near the West Coast of North America. Elevation of the dust layer during the long-range transport was below 3 km. The model is extended to include the transport of an Asian origin anthropogenic tracer over the North Pacific Rim. Both the natural-origin mineral dust and the Asian-origin anthropogenic tracer are simultaneously transported even if their emission regions are different.

Theoretical study on ultrafast intersystem crossing of chromium(III) acetylacetonate

NASA Astrophysics Data System (ADS)

Ando, Hideo; Iuchi, Satoru; Sato, Hirofumi

2012-05-01

In the relaxation process from the 4T2g state of chromium(III) acetylacetonate, CrIII(acac)3, ultrafast intersystem crossing (ISC) competes with vibrational relaxation (VR). This contradicts the conventional cascade model, where ISC rates are slower than VR ones. We hence investigate the relaxation process with quantum chemical calculations and excited-state wavepacket simulations to obtain clues about the origins of the ultrafast ISC. It is found that a potential energy curve of the 4T2g state crosses those of the 2T1g states near the Franck-Condon region and their spin-orbit couplings are strong. Consequently, ultrafast ISC between these states is observed in the wavepacket simulation.

Investigating Deformation and Failure Mechanisms in Nanoscale Multilayer Metallic Composites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zbib, Hussein M.; Bahr, David F.

2014-10-22

Over the history of materials science there are many examples of materials discoveries that have made superlative materials; the strongest, lightest, or toughest material is almost always a goal when we invent new materials. However, often these have been a result of enormous trial and error approaches. A new methodology, one in which researchers design, from the atoms up, new ultra-strong materials for use in energy applications, is taking hold within the science and engineering community. This project focused on one particular new classification of materials; nanolaminate metallic composites. These materials, where two metallic materials are intimately bonded and layeredmore » over and over to form sheets or coatings, have been shown over the past decade to reach strengths over 10 times that of their constituents. However, they are not yet widely used in part because while extremely strong (they don’t permanently bend), they are also not particularly tough (they break relatively easily when notched). Our program took a coupled approach to investigating new materials systems within the laminate field. We used computational materials science to explore ways to institute new deformation mechanisms that occurred when a tri-layer, rather than the more common bi-layer system was created. Our predictions suggested that copper-nickel or copper-niobium composites (two very common bi-layer systems) with layer thicknesses on the order of 20 nm and then layered 100’s of times, would be less tough than a copper-nickel-niobium metallic composite of similar thicknesses. In particular, a particular mode of permanent deformation, cross-slip, could be activated only in the tri-layer system; the crystal structure of the other bi-layers would prohibit this particular mode of deformation. We then experimentally validated this predication using a wide range of tools. We utilized a DOE user facility, the Center for Integrated Nanotechnology (CINT), to fabricate, for the first time, these tri-layer composites. CINT formed nanolaminate composites were tested in tension, with bulge testing, using nanoindentation, and using micro-compression testing to demonstrate that the tri-layer films were indeed tougher and hardened more during deformation (they got stronger as we deformed them) than equivalent bi-layers. The seven graduate students, 4 post-docs and research faculty, and the two faculty co-PI’s were able to create a collaborated computational prediction and experimental validation team to demonstrate the benefits of this class of materials to the community. The computational work crossed from atomistic to bulk simulations, and the experiments coupled form nm-scale to the mm scale; closely matching the simulations. The simulations provided viable mechanisms that explained the observed results, and new experimental results were used to push the boundaries of the simulation tools. Over the life of the 7 years of this program we proved that tri-layer nanolaminate metallic composite systems exceeded the mechanical performance of bi-layer systems if the right materials were chosen, and that the mechanism responsible for this was tied to the cross slip of dislocations. With 30 journal publications resulting from this work we have broadly disseminated this family of results to the scientific community.« less

Terahertz broadband polarization converter based on metamaterials

NASA Astrophysics Data System (ADS)

Li, Yonghua; Zhao, Guozhong

2018-01-01

Based on the metamaterial composed of symmetrical split resonant ring, a broadband reflective terahertz polarization converter is proposed. The numerical simulation shows that it can rotate the polarization direction of linear polarized wave 90° in the range of 0.7-1.8THz and the polarization conversion ratio is over 90%. The reflection coefficient of the two electric field components in the diagonal direction is the same and the phase difference is 180° ,which leads to the cross-polarization rotation.In order to further study the physical mechanism of high polarization conversion, we analyze the surface current distribution of the resonant ring. The polarization converter has potential applications in terahertz wave plate and metamaterial antenna design.

Both texting and eating are associated with impaired simulated driving performance.

PubMed

Alosco, Michael L; Spitznagel, Mary Beth; Fischer, Kimberly Hall; Miller, Lindsay A; Pillai, Vivek; Hughes, Joel; Gunstad, John

2012-09-01

Distracted driving is a known contributor to traffic accidents, and many states have banned texting while driving. However, little is known about the potential accident risk of other common activities while driving, such as eating. The objective of the current study was to examine the adverse impact of eating/drinking behavior relative to texting and nondistracted behaviors on a simulated driving task. A total of 186 participants were recruited from undergraduate psychology courses over 2 semesters at Kent State University. We utilized the Kent Multidimensional Assessment Driving Simulation (K-MADS) to compare simulated driving performance among participants randomly assigned to texting (N = 45), eating (N = 45), and control (N = 96) conditions. Multivariate analyses of variance (MANOVA) were conducted to examine between-group differences on simulated driving indices. MANOVA analyses indicated that groups differed in simulated driving performance, F(14, 366) = 7.70, P < .001. Both texting and eating produced impaired driving performance relative to controls, though these behaviors had approximately equal effect. Specifically, both texting and eating groups had more collisions, pedestrian strikes, and center line crossings than controls. In addition, the texting group had more road edge excursions than either eating or control participants and the eating group missed more stop signs than controls. These findings suggest that both texting and eating are associated with poorer simulated driving performance. Future work is needed to determine whether these findings generalize to real-world driving and the development of strategies to reduce distracted driving.

Cognitive deficits are associated with poorer simulated driving in older adults with heart failure

PubMed Central

2013-01-01

Background Cognitive impairment is prevalent in older adults with heart failure (HF) and associated with reduced functional independence. HF patients appear at risk for reduced driving ability, as past work in other medical samples has shown cognitive dysfunction to be an important contributor to driving performance. The current study examined whether cognitive dysfunction was independently associated with reduced driving simulation performance in a sample of HF patients. Methods 18 persons with HF (67.72; SD = 8.56 year) completed echocardiogram and a brief neuropsychological test battery assessing global cognitive function, attention/executive function, memory and motor function. All participants then completed the Kent Multidimensional Assessment Driving Simulation (K-MADS), a driving simulator scenario with good psychometric properties. Results The sample exhibited an average Mini Mental State Examination (MMSE) score of 27.83 (SD = 2.09). Independent sample t-tests showed that HF patients performed worse than healthy adults on the driving simulation scenario. Finally, partial correlations showed worse attention/executive and motor function were independently associated with poorer driving simulation performance across several indices reflective of driving ability (i.e., centerline crossings, number of collisions, % of time over the speed limit, among others). Conclusion The current findings showed that reduced cognitive function was associated with poor simulated driving performance in older adults with HF. If replicated using behind-the-wheel testing, HF patients may be at elevated risk for unsafe driving and routine driving evaluations in this population may be warranted. PMID:24499466

Ultrathin Six-Band Polarization-Insensitive Perfect Metamaterial Absorber Based on a Cross-Cave Patch Resonator for Terahertz Waves

PubMed Central

Cheng, Yong Zhi; Huang, Mu Lin; Chen, Hao Ran; Guo, Zhen Zhong; Mao, Xue Song; Gong, Rong Zhou

2017-01-01

A simple design of an ultrathin six-band polarization-insensitive terahertz perfect metamaterial absorber (PMMA), composed of a metal cross-cave patch resonator (CCPR) placed over a ground plane, was proposed and investigated numerically. The numerical simulation results demonstrate that the average absorption peaks are up to 95% at six resonance frequencies. Owing to the ultra-narrow band resonance absorption of the structure, the designed PMMA also exhibits a higher Q factor (>65). In addition, the absorption properties can be kept stable for both normal incident transverse magnetic (TM) and transverse electric (TE) waves. The physical mechanism behind the observed high-level absorption is illustrated by the electric and power loss density distributions. The perfect absorption originates mainly from the higher-order multipolar plasmon resonance of the structure, which differs sharply from most previous studies of PMMAs. Furthermore, the resonance absorption properties of the PMMA can be modified and adjusted easily by varying the geometric parameters of the unit cell. PMID:28772951

Experimental and Numerical Study on Performance of Ducted Hydrokinetic Turbines with Pre-Swirl Stator Blades.

NASA Astrophysics Data System (ADS)

Gish, Andrew

2015-11-01

Ducts (also called shrouds) have been shown to improve performance of hydrokinetic turbines in some situations, bringing the power coefficient (Cp) closer to the Betz limit. Here we investigate optimization of the duct design as well as the addition of stator blades upstream of the turbine rotor to introduce pre-swirl in the flow. A small scale three-bladed turbine was tested in a towing tank. Three cases (bare turbine, with duct, and with duct and stators) were tested over a range of flow speeds. Important parameters include duct cross-sectional shape, blade-duct gap, stator cross-sectional shape, and stator angle. For each test, Cp was evaluated as a function of tip speed ratio (TSR). Experimental results were compared with numerical simulations. Results indicate that ducts and stators can improve performance at slower flow speeds and lower the stall speed compared to a bare turbine, but may degrade performance at higher speeds. Ongoing efforts to optimize duct and stator configurations will be discussed.

Numerical Study on Section Constitutive Relations of Members Reinforced by Steel-BFRP Composite Bars

NASA Astrophysics Data System (ADS)

Xiao, Tongliang; Qiu, Hongxing

2017-06-01

Steel-Basalt FRP Composite Bar (S-BFCB) is a new kind of substitute material for longitudinal reinforcement, with high elastic modulus, stable post-yield stiffness and excellent corrosive resistance. Based on mechanical properties of S-BFCB and the plane cross-section assumption, the moment-curvature curves of beam and column members are simulated. Some parameters such as equivalent rebar ratio, postyeild stiffness, concrete strength and axial compression ratio of column were discussed. Results show that the constitutive relation of the cross section is similar with RC member in elastic and cracking stages, while different in post-yield stage. With the increase of postyeild stiffness ratio of composite bar, the ultimate bearing capacity of component improved observably, member may turn out over-reinforced phenomenon, concrete crushing may appear before the fibersarefractured. The effect of concrete strength increase in lower postyeild stiffness ratio is not obvious than in higher. The increase of axial compression ratio has actively influence on bearing capacity of column, but decreases on the ductility.

Lessons Learned from a Cross-Model Validation between a Discrete Event Simulation Model and a Cohort State-Transition Model for Personalized Breast Cancer Treatment.

PubMed

Jahn, Beate; Rochau, Ursula; Kurzthaler, Christina; Paulden, Mike; Kluibenschädl, Martina; Arvandi, Marjan; Kühne, Felicitas; Goehler, Alexander; Krahn, Murray D; Siebert, Uwe

2016-04-01

Breast cancer is the most common malignancy among women in developed countries. We developed a model (the Oncotyrol breast cancer outcomes model) to evaluate the cost-effectiveness of a 21-gene assay when used in combination with Adjuvant! Online to support personalized decisions about the use of adjuvant chemotherapy. The goal of this study was to perform a cross-model validation. The Oncotyrol model evaluates the 21-gene assay by simulating a hypothetical cohort of 50-year-old women over a lifetime horizon using discrete event simulation. Primary model outcomes were life-years, quality-adjusted life-years (QALYs), costs, and incremental cost-effectiveness ratios (ICERs). We followed the International Society for Pharmacoeconomics and Outcomes Research-Society for Medical Decision Making (ISPOR-SMDM) best practice recommendations for validation and compared modeling results of the Oncotyrol model with the state-transition model developed by the Toronto Health Economics and Technology Assessment (THETA) Collaborative. Both models were populated with Canadian THETA model parameters, and outputs were compared. The differences between the models varied among the different validation end points. The smallest relative differences were in costs, and the greatest were in QALYs. All relative differences were less than 1.2%. The cost-effectiveness plane showed that small differences in the model structure can lead to different sets of nondominated test-treatment strategies with different efficiency frontiers. We faced several challenges: distinguishing between differences in outcomes due to different modeling techniques and initial coding errors, defining meaningful differences, and selecting measures and statistics for comparison (means, distributions, multivariate outcomes). Cross-model validation was crucial to identify and correct coding errors and to explain differences in model outcomes. In our comparison, small differences in either QALYs or costs led to changes in ICERs because of changes in the set of dominated and nondominated strategies. © The Author(s) 2015.

Spatial interpolation of forest conditions using co-conditional geostatistical simulation

Treesearch

H. Todd Mowrer

2000-01-01

In recent work the author used the geostatistical Monte Carlo technique of sequential Gaussian simulation (s.G.s.) to investigate uncertainty in a GIS analysis of potential old-growth forest areas. The current study compares this earlier technique to that of co-conditional simulation, wherein the spatial cross-correlations between variables are included. As in the...

Matrix quality and disturbance frequency drive evolution of species behavior at habitat boundaries.

PubMed

Martin, Amanda E; Fahrig, Lenore

2015-12-01

Previous theoretical studies suggest that a species' landscape should influence the evolution of its dispersal characteristics, because landscape structure affects the costs and benefits of dispersal. However, these studies have not considered the evolution of boundary crossing, that is, the tendency of animals to cross from habitat to nonhabitat ("matrix"). It is important to understand this dispersal behavior, because of its effects on the probability of population persistence. Boundary-crossing behavior drives the rate of interaction with matrix, and thus, it influences the rate of movement among populations and the risk of dispersal mortality. We used an individual-based, spatially explicit model to simulate the evolution of boundary crossing in response to landscape structure. Our simulations predict higher evolved probabilities of boundary crossing in landscapes with more habitat, less fragmented habitat, higher-quality matrix, and more frequent disturbances (i.e., fewer generations between local population extinction events). Unexpectedly, our simulations also suggest that matrix quality and disturbance frequency have much stronger effects on the evolution of boundary crossing than either habitat amount or habitat fragmentation. Our results suggest that boundary-crossing responses are most affected by the costs of dispersal through matrix and the benefits of escaping local extinction events. Evolution of optimal behavior at habitat boundaries in response to the landscape may have implications for species in human-altered landscapes, because this behavior may become suboptimal if the landscape changes faster than the species' evolutionary response to that change. Understanding how matrix quality and habitat disturbance drive evolution of behavior at boundaries, and how this in turn influences the extinction risk of species in human-altered landscapes should help us identify species of conservation concern and target them for management.

Quantifying the Role of Population Subdivision in Evolution on Rugged Fitness Landscapes

PubMed Central

Bitbol, Anne-Florence; Schwab, David J.

2014-01-01

Natural selection drives populations towards higher fitness, but crossing fitness valleys or plateaus may facilitate progress up a rugged fitness landscape involving epistasis. We investigate quantitatively the effect of subdividing an asexual population on the time it takes to cross a fitness valley or plateau. We focus on a generic and minimal model that includes only population subdivision into equivalent demes connected by global migration, and does not require significant size changes of the demes, environmental heterogeneity or specific geographic structure. We determine the optimal speedup of valley or plateau crossing that can be gained by subdivision, if the process is driven by the deme that crosses fastest. We show that isolated demes have to be in the sequential fixation regime for subdivision to significantly accelerate crossing. Using Markov chain theory, we obtain analytical expressions for the conditions under which optimal speedup is achieved: valley or plateau crossing by the subdivided population is then as fast as that of its fastest deme. We verify our analytical predictions through stochastic simulations. We demonstrate that subdivision can substantially accelerate the crossing of fitness valleys and plateaus in a wide range of parameters extending beyond the optimal window. We study the effect of varying the degree of subdivision of a population, and investigate the trade-off between the magnitude of the optimal speedup and the width of the parameter range over which it occurs. Our results, obtained for fitness valleys and plateaus, also hold for weakly beneficial intermediate mutations. Finally, we extend our work to the case of a population connected by migration to one or several smaller islands. Our results demonstrate that subdivision with migration alone can significantly accelerate the crossing of fitness valleys and plateaus, and shed light onto the quantitative conditions necessary for this to occur. PMID:25122220

DBCC Software as Database for Collisional Cross-Sections

NASA Astrophysics Data System (ADS)

Moroz, Daniel; Moroz, Paul

2014-10-01

Interactions of species, such as atoms, radicals, molecules, electrons, and photons, in plasmas used for materials processing could be very complex, and many of them could be described in terms of collisional cross-sections. Researchers involved in plasma simulations must select reasonable cross-sections for collisional processes for implementing them into their simulation codes to be able to correctly simulate plasmas. However, collisional cross-section data are difficult to obtain, and, for some collisional processes, the cross-sections are still not known. Data on collisional cross-sections can be obtained from numerous sources including numerical calculations, experiments, journal articles, conference proceedings, scientific reports, various universities' websites, national labs and centers specifically devoted to collecting data on cross-sections. The cross-sections data received from different sources could be partial, corresponding to limited energy ranges, or could even not be in agreement. The DBCC software package was designed to help researchers in collecting, comparing, and selecting cross-sections, some of which could be constructed from others or chosen as defaults. This is important as different researchers may place trust in different cross-sections or in different sources. We will discuss the details of DBCC and demonstrate how it works and why it is beneficial to researchers working on plasma simulations.

Actin cable distribution and dynamics arising from cross-linking, motor pulling, and filament turnover

PubMed Central

Tang, Haosu; Laporte, Damien; Vavylonis, Dimitrios

2014-01-01

The growth of fission yeast relies on the polymerization of actin filaments nucleated by formin For3p, which localizes at tip cortical sites. These actin filaments bundle to form actin cables that span the cell and guide the movement of vesicles toward the cell tips. A big challenge is to develop a quantitative understanding of these cellular actin structures. We used computer simulations to study the spatial and dynamical properties of actin cables. We simulated individual actin filaments as semiflexible polymers in three dimensions composed of beads connected with springs. Polymerization out of For3p cortical sites, bundling by cross-linkers, pulling by type V myosin, and severing by cofilin are simulated as growth, cross-linking, pulling, and turnover of the semiflexible polymers. With the foregoing mechanisms, the model generates actin cable structures and dynamics similar to those observed in live-cell experiments. Our simulations reproduce the particular actin cable structures in myoVΔ cells and predict the effect of increased myosin V pulling. Increasing cross-linking parameters generates thicker actin cables. It also leads to antiparallel and parallel phases with straight or curved cables, consistent with observations of cells overexpressing α-actinin. Finally, the model predicts that clustering of formins at cell tips promotes actin cable formation. PMID:25103242

Only time will tell: the changing relationships between LMX, job performance, and justice.

PubMed

Park, Sanghee; Sturman, Michael C; Vanderpool, Chelsea; Chan, Elisa

2015-05-01

Although it has been argued that leader-member exchange (LMX) is a phenomenon that develops over time, the existing LMX literature is largely cross-sectional in nature. Yet, there is a great need for unraveling how LMX develops over time. To address this issue in the LMX literature, we examine the relationships of LMX with 2 variables known for changing over time: job performance and justice perceptions. On the basis of current empirical findings, a simulation deductively shows that LMX develops over time, but differently in early stages versus more mature stages. Our findings also indicate that performance and justice trends affect LMX. Implications for LMX theory and for longitudinal research on LMX, performance, and justice are discussed. (PsycINFO Database Record (c) 2015 APA, all rights reserved).

Large-eddy simulation study of oil/gas plumes in stratified fluid with cross current

NASA Astrophysics Data System (ADS)

Yang, Di; Xiao, Shuolin; Chen, Bicheng; Chamecki, Marcelo; Meneveau, Charles

2017-11-01

Dynamics of the oil/gas plume from a subsea blowout are strongly affected by the seawater stratification and cross current. The buoyant plume entrains ambient seawater and lifts it up to higher elevations. During the rising process, the continuously increasing density difference between the entrained and ambient seawater caused by the stable stratification eventually results in a detrainment of the entrained seawater and small oil droplets at a height of maximum rise (peel height), forming a downward plume outside the rising inner plume. The presence of a cross current breaks the plume's axisymmetry and causes the outer plume to fall along the downstream side of the inner plume. The detrained seawater and oil eventually fall to a neutral buoyancy level (trap height), and disperse horizontally to form an intrusion layer. In this study, the complex plume dynamics is investigated using large-eddy simulation (LES). Various laboratory and field scale cases are simulated to explore the effect of cross current and stratification on the plume dynamics. Based on the LES data, various turbulence statistics of the plume are systematically quantified, leading to some useful insights for modeling the mean plume dynamics using integral plume models. This research is made possible by a RFP-V Grant from The Gulf of Mexico Research Initiative.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ohmi, K.

In recent high luminosity colliders, the finite crossing angle scheme becomes popular to gain the multiplicity of luminosity with multi-bunch or long bunch operation. Success of KEKB showed that the finite crossing angle scheme was no problem to achieve the beam-beam parameter up to 0.05. The authors have studied the beam-beam interactions with/without crossing angle toward higher luminosity. They discuss how the crossing angle affects the beam-beam parameter and luminosity in the present KEK B factory (KEKB) using computer simulations.

Macrosegregation Due to Convection in Al-19Cu Alloy Directionally Solidified Through an Abrupt Expansion in Cross-Section: A Comparison with Al-7Si

NASA Astrophysics Data System (ADS)

Ghods, M.; Lauer, M.; Grugel, R. N.; Tewari, S. N.; Poirier, D. R.

2017-10-01

Hypoeutectic Al-19 wt.% Cu alloys were directionally solidified at two different growth speeds in cylindrical molds that featured an abrupt increase in cross-section, from 3.2 to 9.5 mm in diameter. The effects of thermosolutal convection and shrinkage flow induced by the cross-section change on macrosegregation were investigated. Dendrite clustering and extensive radial macrosegregation were seen, particularly in the larger cross-section after expansion. Negative longitudinal macrosegregation right after the cross-section increase was observed; the extent of macrosegregation, however, decreases with increasing growth speed. Both thermal and flow effects due to cross-section change were seen to influence the radial macrosegregation immediately before, and after the expansion. Radial macrosegregation pattern was found to be changing as the mushy zone enters the larger cross-section region above the cross-section change where the solidification is in its unsteady state. The effect of the solutal expansion coefficient on macrosegregation was studied by comparing the degree of thermosolutal convection in Al-19 wt.% Cu with a previous study in which we investigated Al-7 wt.% Si. A two-dimensional model accounting for both shrinkage and thermosolutal convection was used to simulate the resulting steepling, as well as the axial and radial macrosegregation. The experimentally observed macrosegregation associated with the expansion during directional solidification is well predicted by the numerical simulations.

Study of final-state radiation in decays of Z bosons produced in $pp$ collisions at 7 TeV

DOE PAGES

Khachatryan, Vardan

2015-05-29

The differential cross sections for the production of photons in Z→μ +μ -γ decays are presented as a function of the transverse energy of the photon and its separation from the nearest muon. The data for these measurements are collected with the CMS detector and correspond to an integrated luminosity of 4.7 fb -1 of pp collisions at √s=7 TeV delivered by the CERN LHC. The cross sections are compared to simulations with powheg and pythia, where pythia is used to simulate parton showers and final-state photons. These simulations match the data to better than 5%.

Observations and simulations of specularly reflected He++ at Earth's quasiperpendicular bow shock

NASA Astrophysics Data System (ADS)

Broll, J. M.; Fuselier, S. A.; Trattner, K. J.; Anderson, B. J.; Burch, J. L.; Giles, B. L.

2016-12-01

Specular reflection of protons at Earth's quasiperpendicular bow shock is an important process for supercritical shock dissipation. Previous studies have found evidence of He++ specular reflection from reduced particle distributions downstream from the shock, but confirmation of the process for heavier ions in the shock foot was not possible due to time resolution constraints. We present He++ distributions, observed by MMS in a quasiperpendicular bow shock crossing, that are consistent with specularly reflected He++. We also investigate the He++ dynamics with test-particle simulations in a simulated shock based on this crossing and we conduct wave analysis to determine what processes lead to separate gyrotropization timescales for the transmitted and reflected populations.

The influence of size, clearance, cartilage properties, thickness and hemiarthroplasty on the contact mechanics of the hip joint with biphasic layers☆

PubMed Central

Li, Junyan; Stewart, Todd D.; Jin, Zhongmin; Wilcox, Ruth K.; Fisher, John

2013-01-01

Computational models of the natural hip joint are needed to examine and optimise tissue sparing interventions where the natural cartilage remains part of the bearing surfaces. Although the importance of interstitial fluid pressurisation in the performance of cartilage has long been recognized, few studies have investigated the time dependent interstitial fluid pressurisation in a three dimensional natural hip joint model. The primary aim of this study was to develop a finite element model of the natural hip incorporating the biphasic cartilage layers that was capable of simulating the joint response over a prolonged physiological loading period. An initial set of sensitivity studies were also undertaken to investigate the influence of hip size, clearance, cartilage properties, thickness and hemiarthroplasty on the contact mechanics of the joint. The contact stress, contact area, fluid pressure and fluid support ratio were calculated and cross-compared between models with different parameters to evaluate their influence. It was found that the model predictions for the period soon after loading were sensitive to the hip size, clearance, cartilage aggregate modulus, thickness and hemiarthroplasty, while the time dependent behaviour over 3000 s was influenced by the hip clearance and cartilage aggregate modulus, permeability, thickness and hemiarthroplasty. The modelling methods developed in this study provide a basic platform for biphasic simulation of the whole hip joint onto which more sophisticated material models or other input parameters could be added in the future. PMID:23664238

The role of simulation in urological training - A quantitative study of practice and opinions.

PubMed

Aydin, Abdullatif; Ahmed, Kamran; Shafi, Ahmed M A; Khan, Muhammad Shamim; Dasgupta, Prokar

2016-12-01

Over the past few decades, simulation-based training has rapidly been adopted by many centres for effective technical and non-technical skills training, as a supplementary method to traditional operating room experience. The aim of this study is to assess the current practice in training and seek opinion regarding the future role of simulation in urological training. A cross sectional survey was designed and distributed amongst expert and trainee urological surgeons. The survey consisted of twenty-two questions that were split into three sections; Introduction (6), Technical Skills training in urology (10) and Non-technical skills training in urology (6). A total of 91 residents and 172 specialists completed the survey. In both groups, there was an agreed consensus that laparoscopic training and exposure was insufficient as only 21% of trainees and 23% of specialists believed that they had sufficient training in this area. Furthermore, both groups lacked simulation-based training in common urological procedures including nephrectomy (62%), cystoscopy (69-74%), ureteroscopy (47-59%), transurethral resection of the prostate (56-65%) and percutaneous renal surgery (76-73%). 90% of trainees and 70% of specialists believed (agreed and strongly agreed) that there is a role for non-technical skills simulation in urological training. Simulation training has been under-used thus far and trainees face an uphill challenge to enhance their skills and technical abilities in the operating room. Simulation is recommended by both trainees and specialists and may represent one of the solutions to the challenges of safe and effective urology procedural training. Copyright © 2015 Royal College of Surgeons of Edinburgh (Scottish charity number SC005317) and Royal College of Surgeons in Ireland. Published by Elsevier Ltd. All rights reserved.

An ab initio chemical reaction model for the direct simulation Monte Carlo study of non-equilibrium nitrogen flows.

PubMed

Mankodi, T K; Bhandarkar, U V; Puranik, B P

2017-08-28

A new ab initio based chemical model for a Direct Simulation Monte Carlo (DSMC) study suitable for simulating rarefied flows with a high degree of non-equilibrium is presented. To this end, Collision Induced Dissociation (CID) cross sections for N 2 +N 2 →N 2 +2N are calculated and published using a global complete active space self-consistent field-complete active space second order perturbation theory N 4 potential energy surface and quasi-classical trajectory algorithm for high energy collisions (up to 30 eV). CID cross sections are calculated for only a selected set of ro-vibrational combinations of the two nitrogen molecules, and a fitting scheme based on spectroscopic weights is presented to interpolate the CID cross section for all possible ro-vibrational combinations. The new chemical model is validated by calculating equilibrium reaction rate coefficients that can be compared well with existing shock tube and computational results. High-enthalpy hypersonic nitrogen flows around a cylinder in the transition flow regime are simulated using DSMC to compare the predictions of the current ab initio based chemical model with the prevailing phenomenological model (the total collision energy model). The differences in the predictions are discussed.

Computational investigation of kinetics of cross-linking reactions in proteins: importance in structure prediction.

PubMed

Bandyopadhyay, Pradipta; Kuntz, Irwin D

2009-01-01

The determination of protein structure using distance constraints is a new and promising field of study. One implementation involves attaching residues of a protein using a cross-linking agent, followed by protease digestion, analysis of the resulting peptides by mass spectroscopy, and finally sequence threading to detect the protein folds. In the present work, we carry out computational modeling of the kinetics of cross-linking reactions in proteins using the master equation approach. The rate constants of the cross-linking reactions are estimated using the pKas and the solvent-accessible surface areas of the residues involved. This model is tested with fibroblast growth factor (FGF) and cytochrome C. It is consistent with the initial experimental rate data for individual lysine residues for cytochrome C. Our model captures all observed cross-links for FGF and almost 90% of the observed cross-links for cytochrome C, although it also predicts cross-links that were not observed experimentally (false positives). However, the analysis of the false positive results is complicated by the fact that experimental detection of cross-links can be difficult and may depend on specific experimental conditions such as pH, ionic strength. Receiver operator characteristic plots showed that our model does a good job in predicting the observed cross-links. Molecular dynamics simulations showed that for cytochrome C, in general, the two lysines come closer for the observed cross-links as compared to the false positive ones. For FGF, no such clear pattern exists. The kinetic model and MD simulation can be used to study proposed cross-linking protocols.

Multiscale Simulations of ALD in Cross Flow Reactors

DOE PAGES

Yanguas-Gil, Angel; Libera, Joseph A.; Elam, Jeffrey W.

2014-08-13

In this study, we have developed a multiscale simulation code that allows us to study the impact of surface chemistry on the coating of large area substrates with high surface area/high aspect-ratio features. Our code, based on open-source libraries, takes advantage of the ALD surface chemistry to achieve an extremely efficient two-way coupling between reactor and feature length scales, and it can provide simulated quartz crystal microbalance and mass spectrometry data at any point of the reactor. By combining experimental surface characterization with simple analysis of growth profiles in a tubular cross flow reactor, we are able to extract amore » minimal set of reactions to effectively model the surface chemistry, including the presence of spurious CVD, to evaluate the impact of surface chemistry on the coating of large, high surface area substrates.« less

Tidal asymmetry and residual circulation over linear sandbanks and their implication on sediment transport: a process-oriented numerical study

USGS Publications Warehouse

Sanay, Rosario; Voulgaris, George; Warner, John C.

2007-01-01

A series of process-oriented numerical simulations is carried out in order to evaluate the relative role of locally generated residual flow and overtides on net sediment transport over linear sandbanks. The idealized bathymetry and forcing are similar to those present in the Norfolk Sandbanks, North Sea. The importance of bottom drag parameterization and bank orientation with respect to the ambient flow is examined in terms of residual flow and overtide generation, and subsequent sediment transport implications are discussed. The results show that although the magnitudes of residual flow and overtides are sensitive to bottom roughness parameterization and bank orientation, the magnitude of the generated residual flow is always larger than that of the locally generated overtides. Also, net sediment transport is always dominated by the nonlinear interaction of the residual flow and the semidiurnal tidal currents, although cross-bank sediment transport can occur even in the absence of a cross-shore residual flow. On the other hand, net sediment divergence/convergence increases as the bottom drag decreases and as bank orientation increases. The sediment erosion/deposition is not symmetric about the crest of the bank, suggesting that originally symmetric banks would have the tendency to become asymmetric.

Acute effects of different light spectra on simulated night-shift work without circadian alignment.

PubMed

Canazei, Markus; Pohl, Wilfried; Bliem, Harald R; Weiss, Elisabeth M

2017-01-01

Short-wavelength and short-wavelength-enhanced light have a strong impact on night-time working performance, subjective feelings of alertness and circadian physiology. In the present study, we investigated acute effects of white light sources with varied reduced portions of short wavelengths on cognitive and visual performance, mood and cardiac output.Thirty-one healthy subjects were investigated in a balanced cross-over design under three light spectra in a simulated night-shift paradigm without circadian adaptation.Exposure to the light spectrum with the largest attenuation of short wavelengths reduced heart rate and increased vagal cardiac parameters during the night compared to the other two light spectra without deleterious effects on sustained attention, working memory and subjective alertness. In addition, colour discrimination capability was significantly decreased under this light source.To our knowledge, the present study for the first time demonstrates that polychromatic white light with reduced short wavelengths, fulfilling current lighting standards for indoor illumination, may have a positive impact on cardiac physiology of night-shift workers without detrimental consequences for cognitive performance and alertness.

The glass transition in cured epoxy thermosets: A comparative molecular dynamics study in coarse-grained and atomistic resolution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Langeloth, Michael; Böhm, Michael C.; Müller-Plathe, Florian

2015-12-28

We investigate the volumetric glass transition temperature T{sub g} in epoxy thermosets by means of molecular dynamics simulations. The epoxy thermosets consist of the resin bisphenol A diglycidyl ether and the hardener diethylenetriamine. A structure based coarse-grained (CG) force field has been derived using iterative Boltzmann inversion in order to facilitate simulations of larger length scales. We observe that T{sub g} increases clearly with the degree of cross-linking for all-atomistic (AA) and CG simulations. The transition T{sub g} in CG simulations of uncured mixtures is much lower than in AA-simulations due to the soft nature of the CG potentials, butmore » increases all the more with the formation of rigid cross-links. Additional simulations of the CG mixtures in contact with a surface show the existence of an interphase region of about 3 nm thickness in which the network properties deviate significantly from the bulk. In accordance to experimental studies, we observe that T{sub g} is reduced in this interphase region and gradually increases to its bulk value with distance from the surface. The present study shows that the glass transition is a local phenomenon that depends on the network structure in the immediate environment.« less

Particle acceleration in the dynamic magnetotail: Orbits in self-consistent three-dimensional MHD fields

NASA Technical Reports Server (NTRS)

Birn, Joachim; Hesse, Michael

1994-01-01

The acceleration of protons in a dynamically evolving magnetotail is investigated by tracing particles in the fields obtained from a three-dimensional resistive magnetohydrodynamic (MHD) simulation. The MHD simulation, representing plasmoid formation and ejection through a near-Earth reconnection process, leads to cross-tail electric fields of up to approximately 4 mV/m with integrated voltages across the tail of up to approximately 200 kV. Energization of particles takes place over a wide range along the tail, due to the large spatial extent of the increased electric field together with the finite cross-tail extent of the electric field region. Such accelerated particles appear earthward of the neutral line over a significant portion of the closed field line region inside of the separatrix, not just in the vicinity of the separatrix. Two different acceleration processes are identified: a 'quasi-potential' acceleration, due to particle motion in the direction of the cross-tail electric field, and a 'quasi-betatron' effect, which consists of multiple energy gains from repeated crossings of the acceleration region, mostly on Speiser-type orbits, in the spatially varying induced electric field. The major source region for accelerated particles in the hundreds of keV range is the central plasma sheet at the dawn flank outside the reconnection site. Since this source plasma is already hot and dense, its moderate energization by a factor of approximately 2 may be sufficient to explain the observed increases in the energetic particle fluxes. Particles from the tail are the source of beams at the plasma sheet/lobe boundary. The temporal increase in the energetic particle fluxes, estimated from the increase in energy gain, occurs on a fast timescale of a few minutes, coincident with a strong increase in B(sub z), despite the fact that the inner boundary ('injection boundary') of the distribution of energized particles is fairly smooth.

Time-Varying Loads of Co-Axial Rotor Blade Crossings

NASA Technical Reports Server (NTRS)

Schatzman, Natasha L.; Komerath, Narayanan; Romander, Ethan A.

2017-01-01

The blade crossing event of a coaxial counter-rotating rotor is a potential source of noise and impulsive blade loads. Blade crossings occur many times during each rotor revolution. In previous research by the authors, this phenomenon was analyzed by simulating two airfoils passing each other at specified speeds and vertical separation distances, using the compressible Navier-Stokes solver OVERFLOW. The simulations explored mutual aerodynamic interactions associated with thickness, circulation, and compressibility effects. Results revealed the complex nature of the aerodynamic impulses generated by upperlower airfoil interactions. In this paper, the coaxial rotor system is simulated using two trains of airfoils, vertically offset, and traveling in opposite directions. The simulation represents multiple blade crossings in a rotor revolution by specifying horizontal distances between each airfoil in the train based on the circumferential distance between blade tips. The shed vorticity from prior crossing events will affect each pair of upperlower airfoils. The aerodynamic loads on the airfoil and flow field characteristics are computed before, at, and after each airfoil crossing. Results from the multiple-airfoil simulation show noticeable changes in the airfoil aerodynamics by introducing additional fluctuation in the aerodynamic time history.

Suppression of Biodynamic Interference by Adaptive Filtering

NASA Technical Reports Server (NTRS)

Velger, M.; Merhav, S. J.; Grunwald, A. J.

1984-01-01

Preliminary experimental results obtained in moving base simulator tests are presented. Both for pursuit and compensatory tracking tasks, a strong deterioration in tracking performance due to biodynamic interference is found. The use of adaptive filtering is shown to substantially alleviate these effects, resulting in a markedly improved tracking performance and reduction in task difficulty. The effect of simulator motion and of adaptive filtering on human operator describing functions is investigated. Adaptive filtering is found to substantially increase pilot gain and cross-over frequency, implying a more tight tracking behavior. The adaptive filter is found to be effective in particular for high-gain proportional dynamics, low display forcing function power and for pursuit tracking task configurations.

Study of parameters and entrainment of a jet in cross-flow arrangement with transition at two low Reynolds numbers

NASA Astrophysics Data System (ADS)

Cárdenas, Camilo; Denev, Jordan A.; Suntz, Rainer; Bockhorn, Henning

2012-10-01

Investigation of the mixing process is one of the main issues in chemical engineering and combustion and the configuration of a jet into a cross-flow (JCF) is often employed for this purpose. Experimental data are gained for the symmetry plane in a JCF-arrangement of an air flow using a combination of particle image velocimetry (PIV) with laser-induced fluorescence (LIF). The experimental data with thoroughly measured boundary conditions are complemented with direct numerical simulations, which are based on idealized boundary conditions. Two similar cases are studied with a fixed jet-to-cross-flow velocity ratio of 3.5 and variable cross-flow Reynolds numbers equal to 4,120 and 8,240; in both cases the jet issues from the pipe at laminar conditions. This leads to a laminar-to-turbulent transition, which depends on the Reynolds number and occurs quicker for the case with higher Reynolds number in both experiments and simulations as well. It was found that the Reynolds number only slightly affects the jet trajectory, which in the case with the higher Reynolds number is slightly deeper. It is attributed to the changed boundary layer shape of the cross-flow. Leeward streamlines bend toward the jet and are responsible for the strong entrainment of cross-flow fluid into the jet. Velocity components are compared for the two Reynolds numbers at the leeward side at positions where strongest entrainment is present and a pressure minimum near the jet trajectory is found. The numerical simulations showed that entrainment is higher for the case with the higher Reynolds number. The latter is attributed to the earlier transition in this case. Fluid entrainment of the jet in cross-flow is more than twice stronger than for a similar flow of a jet issuing into a co-flowing stream. This comparison is made along the trajectory of the two jets at a distance of 5.5 jet diameters downstream and is based on the results from the direct numerical simulations and recently published experiments of a straight jet into a co-flow. Mixing is further studied by means of second-order statistics of the passive scalar variance and the Reynolds fluxes. Windward and leeward sides of the jet exhibit different signs for the time-averaged streamwise Reynolds flux < v x ' c'>. The large coherent structures which contribute to this effect are investigated by means of timely correlated instantaneous PIV-LIF camera snapshots and their contribution to the average statistics of < v x ' c'> are discussed. The discussion on mixing capabilities of the jet in cross-flow is supported by simulation results showing the instantaneous three-dimensional coherent structures defined in terms of the pressure fluctuations.

Simulated interactions of pedestrian crossings and motorized vehicles in residential areas

NASA Astrophysics Data System (ADS)

Wang, Yan; Peng, Zhongyi; Chen, Qun

2018-01-01

To evaluate whether motorized vehicles can travel through a residential area, this paper develops a cellular automata (CA) model to simulate the interactions between pedestrian crossings and motorized vehicles in a residential area. In this paper, pedestrians determine their crossing speed according to their judgments of the position and velocity of the upcoming vehicles. The pedestrians may walk slowly or quickly or even run, and the pedestrian crossing time influences the vehicle movement. In addition, the proposed model considers the safety margin time needed for pedestrians to cross, and pedestrian-vehicle conflict is considered using the vehicle collision avoidance rule. Through simulations of interactions of pedestrian crossings with motorized vehicles' movement on a typical road in a residential area, the average wait time for pedestrians to cross and the average vehicle velocity under different pedestrian crossing volumes, different vehicle flows and different maximum vehicle velocities are obtained. To avoid an excessive waiting time for pedestrians to cross, the vehicle flow should be less than 180 veh/h, which allows an average of less than 10 s of waiting time; if the vehicle flow rate is less than 36 veh/h, then the waiting time is approximately 1 s. Field observations are conducted to validate the simulation results.

Cross Sections and Transport Properties of BR- Ions in AR

NASA Astrophysics Data System (ADS)

Jovanovic, Jasmina; Stojanovic, Vladimir; Raspopovic, Zoran; Petrovic, Zoran

2014-10-01

We have used a combination of a simple semi-analytic theory - Momentum Transfer Theory (MTT) and exact Monte Carlo (MC) simulations to develop Br- in Ar momentum transfer cross section based on the available data for reduced mobility at the temperature T = 300 K over the range 10 Td <= E / N <= 300 Td. At very low energies, we have extrapolated obtained cross sections towards Langevin's cross section. Also, we have extrapolated data to somewhat higher energies based on behavior of similar ions in similar gases and by the addition of the total detachment cross section that was used from the threshold around 7.7 eV. Relatively complete set was derived which can be used in modeling of plasmas by both hybrid, particle in cell (PIC) and fluid codes. A good agreement between calculated and measured ion mobilities and longitudinal diffusion coefficients is an independent proof of the validity of the cross sections that were derived for the negative ion mobility data. In addition to transport coefficients we have also calculated the net rate coefficients of elastic scattering and detachment. Author acknowledge Ministry of Education, Science and Technology, Proj. Nos. 171037 and 410011.

Location of Opening-Out Cross-Cuts in Relation to Rockburst Hazard Conditions along the Face in the Light of Model Testing

NASA Astrophysics Data System (ADS)

Chlebowski, Dariusz; Zorychta, Andrzej; Burtan, Zbigniew; Cała, Marek

2017-03-01

The paper outlines the main objectives of the method used for assessment of rockburst hazard during longwall mining operations taking into account factors expressing the confined work conditions. Relying on analytical approach, the conditions are examined that are likely to trigger the rockburst occurrence along the face, with regards to the location of cross-cuts and taking into account the presence of past excavation and geological disorders in the overlying strata. Simulation data apply to three cases of model loading, representing the impacts of residual pillars, gobs surrounded by undisturbed blocks of coal and the presence of faults, whilst the procedure involves five possible locations of opening-out cross-cuts in relation to characteristic points in the model. Results are examined basing on variability patterns of stress concentration and energy density distribution in the proximity of the workface in the course of progressing mining operations.

Micromechanical analysis of composites with fibers distributed randomly over the transverse cross-section

NASA Astrophysics Data System (ADS)

Weng, Jingmeng; Wen, Weidong; Cui, Haitao; Chen, Bo

2018-06-01

A new method to generate the random distribution of fibers in the transverse cross-section of fiber reinforced composites with high fiber volume fraction is presented in this paper. Based on the microscopy observation of the transverse cross-sections of unidirectional composite laminates, hexagon arrangement is set as the initial arrangement status, and the initial velocity of each fiber is arbitrary at an arbitrary direction, the micro-scale representative volume element (RVE) is established by simulating perfectly elastic collision. Combined with the proposed periodic boundary conditions which are suitable for multi-axial loading, the effective elastic properties of composite materials can be predicted. The predicted properties show reasonable agreement with experimental results. By comparing the stress field of RVE with fibers distributed randomly and RVE with fibers distributed periodically, the predicted elastic modulus of RVE with fibers distributed randomly is greater than RVE with fibers distributed periodically.

Regional-specific Stochastic Simulation of Spatially-distributed Ground-motion Time Histories using Wavelet Packet Analysis

NASA Astrophysics Data System (ADS)

Huang, D.; Wang, G.

2014-12-01

Stochastic simulation of spatially distributed ground-motion time histories is important for performance-based earthquake design of geographically distributed systems. In this study, we develop a novel technique to stochastically simulate regionalized ground-motion time histories using wavelet packet analysis. First, a transient acceleration time history is characterized by wavelet-packet parameters proposed by Yamamoto and Baker (2013). The wavelet-packet parameters fully characterize ground-motion time histories in terms of energy content, time- frequency-domain characteristics and time-frequency nonstationarity. This study further investigates the spatial cross-correlations of wavelet-packet parameters based on geostatistical analysis of 1500 regionalized ground motion data from eight well-recorded earthquakes in California, Mexico, Japan and Taiwan. The linear model of coregionalization (LMC) is used to develop a permissible spatial cross-correlation model for each parameter group. The geostatistical analysis of ground-motion data from different regions reveals significant dependence of the LMC structure on regional site conditions, which can be characterized by the correlation range of Vs30 in each region. In general, the spatial correlation and cross-correlation of wavelet-packet parameters are stronger if the site condition is more homogeneous. Using the regional-specific spatial cross-correlation model and cokriging technique, wavelet packet parameters at unmeasured locations can be best estimated, and regionalized ground-motion time histories can be synthesized. Case studies and blind tests demonstrated that the simulated ground motions generally agree well with the actual recorded data, if the influence of regional-site conditions is considered. The developed method has great potential to be used in computational-based seismic analysis and loss estimation in a regional scale.

Informing conservation management about structural versus functional connectivity: a case-study of Cross River gorillas.

PubMed

Imong, Inaoyom; Robbins, Martha M; Mundry, Roger; Bergl, Richard; Kühl, Hjalmar S

2014-10-01

Connectivity among subpopulations is vital for the persistence of small and fragmented populations. For management interventions to be effective conservation planners have to make the critical distinction between structural connectivity (based on landscape structure) and functional connectivity (which considers both landscape structure and organism-specific behavioral attributes) which can differ considerably within a given context. We assessed spatial and temporal changes in structural and functional connectivity of the Cross River gorilla Gorilla gorilla diehli (CRG) population in a 12,000 km(2) landscape in the Nigeria-Cameroon border region over a 23-year period, comparing two periods: 1987-2000 and 2000-2010. Despite substantial forest connections between occupied areas, genetic evidence shows that only limited dispersal occurs among CRG subpopulations. We used remotely sensed land-cover data and simulated human pressure (using a spatially explicit agent-based model) to assess human impact on connectivity of the CRG population. We calculated cost-weighted distances between areas occupied by gorillas as measures of connectivity (structural based on land-cover only, functional based on both land-cover and simulated human pressure). Whereas structural connectivity decreased by 5% over the 23-year period, functional connectivity decreased by 11%, with both decreasing more during the latter compared to the earlier period. Our results highlight the increasing threat of isolation of CRG subpopulations due to human disturbance, and provide insight into how increasing human influence may lead to functional isolation of wildlife populations despite habitat continuity, a pressing and common issue in tropical Africa often not accounted for when deciding management interventions. In addition to quantifying threats to connectivity, our study provides crucial evidence for management authorities to identify actions that are more likely to be effective for conservation of species in human-dominated landscapes. Our approach can be easily applied to other species, regions, and scales. © 2014 Wiley Periodicals, Inc.

Wide-Field Lensing Mass Maps from Dark Energy Survey Science Verification Data

DOE PAGES

Chang, C.

2015-07-29

We present a mass map reconstructed from weak gravitational lensing shear measurements over 139 deg 2 from the Dark Energy Survey science verification data. The mass map probes both luminous and dark matter, thus providing a tool for studying cosmology. We also find good agreement between the mass map and the distribution of massive galaxy clusters identified using a red-sequence cluster finder. Potential candidates for superclusters and voids are identified using these maps. We measure the cross-correlation between the mass map and a magnitude-limited foreground galaxy sample and find a detection at the 6.8σ level with 20 arc min smoothing.more » These measurements are consistent with simulated galaxy catalogs based on N-body simulations from a cold dark matter model with a cosmological constant. This suggests low systematics uncertainties in the map. Finally, we summarize our key findings in this Letter; the detailed methodology and tests for systematics are presented in a companion paper.« less

Wide-Field Lensing Mass Maps from Dark Energy Survey Science Verification Data.

PubMed

Chang, C; Vikram, V; Jain, B; Bacon, D; Amara, A; Becker, M R; Bernstein, G; Bonnett, C; Bridle, S; Brout, D; Busha, M; Frieman, J; Gaztanaga, E; Hartley, W; Jarvis, M; Kacprzak, T; Kovács, A; Lahav, O; Lin, H; Melchior, P; Peiris, H; Rozo, E; Rykoff, E; Sánchez, C; Sheldon, E; Troxel, M A; Wechsler, R; Zuntz, J; Abbott, T; Abdalla, F B; Allam, S; Annis, J; Bauer, A H; Benoit-Lévy, A; Brooks, D; Buckley-Geer, E; Burke, D L; Capozzi, D; Carnero Rosell, A; Carrasco Kind, M; Castander, F J; Crocce, M; D'Andrea, C B; Desai, S; Diehl, H T; Dietrich, J P; Doel, P; Eifler, T F; Evrard, A E; Fausti Neto, A; Flaugher, B; Fosalba, P; Gruen, D; Gruendl, R A; Gutierrez, G; Honscheid, K; James, D; Kent, S; Kuehn, K; Kuropatkin, N; Maia, M A G; March, M; Martini, P; Merritt, K W; Miller, C J; Miquel, R; Neilsen, E; Nichol, R C; Ogando, R; Plazas, A A; Romer, A K; Roodman, A; Sako, M; Sanchez, E; Sevilla, I; Smith, R C; Soares-Santos, M; Sobreira, F; Suchyta, E; Tarle, G; Thaler, J; Thomas, D; Tucker, D; Walker, A R

2015-07-31

We present a mass map reconstructed from weak gravitational lensing shear measurements over 139  deg2 from the Dark Energy Survey science verification data. The mass map probes both luminous and dark matter, thus providing a tool for studying cosmology. We find good agreement between the mass map and the distribution of massive galaxy clusters identified using a red-sequence cluster finder. Potential candidates for superclusters and voids are identified using these maps. We measure the cross-correlation between the mass map and a magnitude-limited foreground galaxy sample and find a detection at the 6.8σ level with 20 arc min smoothing. These measurements are consistent with simulated galaxy catalogs based on N-body simulations from a cold dark matter model with a cosmological constant. This suggests low systematics uncertainties in the map. We summarize our key findings in this Letter; the detailed methodology and tests for systematics are presented in a companion paper.

Cross-flow turbines: progress report on physical and numerical model studies at large laboratory scale

NASA Astrophysics Data System (ADS)

Wosnik, Martin; Bachant, Peter

2016-11-01

Cross-flow turbines show potential in marine hydrokinetic (MHK) applications. A research focus is on accurately predicting device performance and wake evolution to improve turbine array layouts for maximizing overall power output, i.e., minimizing wake interference, or taking advantage of constructive wake interaction. Experiments were carried with large laboratory-scale cross-flow turbines D O (1 m) using a turbine test bed in a large cross-section tow tank, designed to achieve sufficiently high Reynolds numbers for the results to be Reynolds number independent with respect to turbine performance and wake statistics, such that they can be reliably extrapolated to full scale and used for model validation. Several turbines of varying solidity were employed, including the UNH Reference Vertical Axis Turbine (RVAT) and a 1:6 scale model of the DOE-Sandia Reference Model 2 (RM2) turbine. To improve parameterization in array simulations, an actuator line model (ALM) was developed to provide a computationally feasible method for simulating full turbine arrays inside Navier-Stokes models. Results are presented for the simulation of performance and wake dynamics of cross-flow turbines and compared with experiments and body-fitted mesh, blade-resolving CFD. Supported by NSF-CBET Grant 1150797, Sandia National Laboratories.

Global MHD Simulations of the Earth's Bow Shock Shape and Motion Under Variable Solar Wind Conditions

NASA Astrophysics Data System (ADS)

Mejnertsen, L.; Eastwood, J. P.; Hietala, H.; Schwartz, S. J.; Chittenden, J. P.

2018-01-01

Empirical models of the Earth's bow shock are often used to place in situ measurements in context and to understand the global behavior of the foreshock/bow shock system. They are derived statistically from spacecraft bow shock crossings and typically treat the shock surface as a conic section parameterized according to a uniform solar wind ram pressure, although more complex models exist. Here a global magnetohydrodynamic simulation is used to analyze the variability of the Earth's bow shock under real solar wind conditions. The shape and location of the bow shock is found as a function of time, and this is used to calculate the shock velocity over the shock surface. The results are compared to existing empirical models. Good agreement is found in the variability of the subsolar shock location. However, empirical models fail to reproduce the two-dimensional shape of the shock in the simulation. This is because significant solar wind variability occurs on timescales less than the transit time of a single solar wind phase front over the curved shock surface. Empirical models must therefore be used with care when interpreting spacecraft data, especially when observations are made far from the Sun-Earth line. Further analysis reveals a bias to higher shock speeds when measured by virtual spacecraft. This is attributed to the fact that the spacecraft only observes the shock when it is in motion. This must be accounted for when studying bow shock motion and variability with spacecraft data.

Simulation of SEU Cross-sections using MRED under Conditions of Limited Device Information

NASA Technical Reports Server (NTRS)

Lauenstein, J. M.; Reed, R. A.; Weller, R. A.; Mendenhall, M. H.; Warren, K. M.; Pellish, J. A.; Schrimpf, R. D.; Sierawski, B. D.; Massengill, L. W.; Dodd, P. E.;

Assessment of CMIP5 historical simulations of rainfall over Southeast Asia

NASA Astrophysics Data System (ADS)

Raghavan, Srivatsan V.; Liu, Jiandong; Nguyen, Ngoc Son; Vu, Minh Tue; Liong, Shie-Yui

2018-05-01

We present preliminary analyses of the historical (1986-2005) climate simulations of a ten-member subset of the Coupled Model Inter-comparison Project Phase 5 (CMIP5) global climate models over Southeast Asia. The objective of this study was to evaluate the general circulation models' performance in simulating the mean state of climate over this less-studied climate vulnerable region, with a focus on precipitation. Results indicate that most of the models are unable to reproduce the observed state of climate over Southeast Asia. Though the multi-model ensemble mean is a better representation of the observations, the uncertainties in the individual models are far high. There is no particular model that performed well in simulating the historical climate of Southeast Asia. There seems to be no significant influence of the spatial resolutions of the models on the quality of simulation, despite the view that higher resolution models fare better. The study results emphasize on careful consideration of models for impact studies and the need to improve the next generation of models in their ability to simulate regional climates better.

Large-Eddy Simulation Analysis of Unsteady Separation Over a Pitching Airfoil at High Reynolds Number

DTIC Science & Technology

2013-12-24

channel flow using explicit filtering and dynamic mixed models, Physics of Fluids, (08 2012): 0. doi : 10.1063/1.4745007 Satbir Singh, Donghyun You...08 2013): 0. doi : 10.1016/j.ijheatfluidflow.2013.02.008 TOTAL: 2 Received Paper TOTAL: Number of Papers published in non peer-reviewed journals...coordinate xi Cartesian coordinates y Wall-normal coordinate z Cross-stream coordinate Greek Symbols α Angle of attack δ Dirac delta function; boundary

An Experimental Study of Swirling Flows as Applied to Annular Combustors

NASA Technical Reports Server (NTRS)

Seal, Michael Damian, II

1997-01-01

This thesis presents an experimental study of swirling flows with direct applications to gas turbine combustors. Two separate flowfields were investigated: a round, swirling jet and a non-combusting annular combustor model. These studies were intended to allow both a further understanding of the behavior of general swirling flow characteristics, such as the recirculation zone, as well as to provide a base for the development of computational models. In order to determine the characteristics of swirling flows the concentration fields of a round, swirling jet were analyzed for varying amount of swirl. The experimental method used was a light scattering concentration measurement technique known as marker nephelometry. Results indicated the formation of a zone of recirculating fluid for swirl ratios (rotational speed x jet radius over mass average axial velocity) above a certain critical value. The size of this recirculation zone, as well as the spread angle of the jet, was found to increase with increase in the amount of applied swirl. The annular combustor model flowfield simulated the cold-flow characteristics of typical current annular combustors: swirl, recirculation, primary air cross jets and high levels of turbulence. The measurements in the combustor model made by the Laser Doppler Velocimetry technique, allowed the evaluation of the mean and rms velocities in the three coordinate directions, one Reynold's shear stress component and the turbulence kinetic energy: The primary cross jets were found to have a very strong effect on both the mean and turbulence flowfields. These cross jets, along with a large step change in area and wall jet inlet flow pattern, reduced the overall swirl in the test section to negligible levels. The formation of the strong recirculation zone is due mainly to the cross jets and the large step change in area. The cross jets were also found to drive a four-celled vortex-type motion (parallel to the combustor longitudinal axis) near the cross jet injection plane.

Breaking Gravity Waves Over Large-Scale Topography

NASA Astrophysics Data System (ADS)

Doyle, J. D.; Shapiro, M. A.

2002-12-01

The importance of mountain waves is underscored by the numerous studies that document the impact on the atmospheric momentum balance, turbulence generation, and the creation of severe downslope winds. As stably stratified air is forced to rise over topography, large amplitude internal gravity waves may be generated that propagate vertically, amplify and breakdown in the upper troposphere and lower stratosphere. Many of the numerical studies reported on in the literature have used two- and three-dimensional models with simple, idealized initial states to examine gravity wave breaking. In spite of the extensive previous work, many questions remain regarding gravity wave breaking in the real atmosphere. Outstanding issues that are potentially important include: turbulent mixing and wave overturning processes, mountain wave drag, downstream effects, and the mesoscale predictability of wave breaking. The current limit in our knowledge of gravity wave breaking can be partially attributed to lack of observations. During the Fronts and Atlantic Storm-Track Experiment (FASTEX), a large amplitude gravity wave was observed in the lee of Greenland on 29 January 1997. Observations taken collected during FASTEX presented a unique opportunity to study topographically forced gravity wave breaking and to assess the ability of high-resolution numerical models to predict the structure and evolution of such phenomena. Measurements from the NOAA G-4 research aircraft and high-resolution numerical simulations are used to study the evolution and dynamics of the large-amplitude gravity wave event that took place during the FASTEX. Vertical cross section analysis of dropwindsonde data, with 50-km horizontal spacing, indicates the presence of a large amplitude breaking gravity wave that extends from above the 150-hPa level to 500 hPa. Flight-level data indicate a horizontal shear of over 10-3 s-1 across the breaking wave with 25 K potential temperature perturbations. This breaking wave may have important implications for momentum flux parameterization in mesoscale models, stratospheric-tropospheric exchange dynamics as well as the dynamic sources and sinks of the ozone budget. Additionally, frequent breaking waves over Greenland are a known commercial and military aviation hazard. NRL's nonhydrostatic COAMPS^{TM}$ model is used with four nested grids with horizontal resolutions of 45 km, 15 km, 5 km and 1.67 km and 65 vertical levels to simulate the gravity wave event. The model simulation captures the temporal evolution and horizontal structure of the wave. However, the model underestimates the vertical amplitude of the wave. The model simulation suggests that the breaking wave may be triggered as a consequence of vertically propagating internal gravity waves emanating from katabatic flow near the extreme slopes of eastern Greenland. Additionally, a number of simulations that make use of a horizontally homogeneous initial state and both idealized and actual Greenland topography are performed. These simulations highlight the sensitivity of gravity wave amplification and breaking to the planetary rotation, slope of the Greenland topography, representation of turbulent mixing, and surface processes.

The impact of texting on driver behaviour at rail level crossings.

PubMed

Young, Kristie L; Lenné, Michael G; Salmon, Paul M; Stanton, Neville A

2018-05-21

A driver text messaging in the vicinity of a rail level crossing represents the merging of a high-risk, high-workload driving environment with a highly distracting secondary task. In this simulator study, we examined how texting impacts driver behaviour on approach to actively controlled urban rail level crossings. Twenty-eight participants drove a series of simulated urban routes containing rail level crossings, while sending text messages and while driving without performing a secondary task. At half of the crossings, drivers were required to respond to the crossing warnings as a train approached. Results revealed that texting on approach to rail level crossings had a detrimental impact on a range of driver behaviour measures. Specifically, texting more than doubled the amount of time spent with eyes off the forward roadway, resulting in drivers spending more than half of their approach time to rail level crossings looking away from the road. This lack of visual attention to the roadway was associated with a range of decrements in driving that may be indicative of a loss of situation awareness, including increased brake reaction time to the crossing warnings and a reduction in lateral position control. The findings have safety implications, not only for urban level crossings, but also for passive level crossings where no warnings are present to re-orient the distracted driver's attention toward an approaching train. Copyright © 2018 Elsevier Ltd. All rights reserved.

Spatio-temporal interaction between absorbing aerosols and temperature: Correlation and causality based approach

NASA Astrophysics Data System (ADS)

Dave, P.; Bhushan, M.; Venkataraman, C.

2016-12-01

Indian subcontinent, in particular, the Indo-gangetic plain (IGP) has witnessed large temperature anomalies (Ratnam et al., 2016) along with high emission of absorbing aerosols (AA) (Gazala, et al., 2005). The anomalous high temperature observed over this region may bear a relationship with high AA emissions. Different studies have been conducted to understand AA and temperature relationships (Turco et al., 1983; Hansen et al., 1997, 2005; Seinfeld 2008; Ramanathan et al. 2010b; Ban-Weiss et al., 2012). It was found that when the AA was injected in the lower- mid troposphere the surface air temperature increases while injection of AA at higher troposphere-lower stratosphere surface temperature decreases. These studies used simulation based results to establish link between AA and temperature (Hansen et al., 1997, 2005; Ban-Weiss et al., 2012). The current work focuses on identifying the causal influence of AA on temperature using observational and re-analysis data over Indian subcontinent using cross correlation (CCs) and Granger causality (GC) (Granger, 1969). Aerosol index (AI) from TOMS-OMI was used as index for AA while ERA-interim reanalysis data was used for temperature at varying altitude. Period of study was March-April-May-June (MAMJ) for years 1979-2015. CCs were calculated for all the atmospheric layers. In each layer nearby and distant pixels (>500 kms) with high CCs were identified using clustering technique. It was found that that AI and Temperature shows statistically significant cross-correlations for co-located and distant pixels and more prominently over IGP. The CCs fades away with higher altitudes. CCs analysis was followed by GC analysis to identify the lag over which AI can influence the Temperature. GC also supported the findings of CCs analysis. It is an early attempt to link persisting large temperature anomalies with absorbing aerosols and may help in identifying the role of absorbing aerosol in causing heat waves.

Using Patient Case Video Vignettes to Improve Students' Understanding of Cross-cultural Communication.

PubMed

Arif, Sally; Cryder, Brian; Mazan, Jennifer; Quiñones-Boex, Ana; Cyganska, Angelika

2017-04-01

Objective. To develop, implement, and assess whether simulated patient case videos improve students' understanding of and attitudes toward cross-cultural communication in health care. Design. Third-year pharmacy students (N=159) in a health care communications course participated in a one-hour lecture and two-hour workshop on the topic of cross-cultural communication. Three simulated pharmacist-patient case vignettes highlighting cross-cultural communication barriers, the role of active listening, appropriate use of medical interpreters, and useful models to overcome communication barriers were viewed and discussed in groups of 20 students during the workshop. Assessment. A pre-lecture and post-workshop assessed the effect on students' understanding of and attitudes toward cross-cultural communication. Understanding of cross-cultural communication concepts increased significantly, as did comfort level with providing cross-cultural care. Conclusion. Use of simulated patient case videos in conjunction with an interactive workshop improved pharmacy students' understanding of and comfort level with cross-cultural communication skills and can be useful tools for cultural competency training in the curriculum.

A study to compute integrated dpa for neutron and ion irradiation environments using SRIM-2013

NASA Astrophysics Data System (ADS)

Saha, Uttiyoarnab; Devan, K.; Ganesan, S.

2018-05-01

Displacements per atom (dpa), estimated based on the standard Norgett-Robinson-Torrens (NRT) model, is used for assessing radiation damage effects in fast reactor materials. A computer code CRaD has been indigenously developed towards establishing the infrastructure to perform improved radiation damage studies in Indian fast reactors. We propose a method for computing multigroup neutron NRT dpa cross sections based on SRIM-2013 simulations. In this method, for each neutron group, the recoil or primary knock-on atom (PKA) spectrum and its average energy are first estimated with CRaD code from ENDF/B-VII.1. This average PKA energy forms the input for SRIM simulation, wherein the recoil atom is taken as the incoming ion on the target. The NRT-dpa cross section of iron computed with "Quick" Kinchin-Pease (K-P) option of SRIM-2013 is found to agree within 10% with the standard NRT-dpa values, if damage energy from SRIM simulation is used. SRIM-2013 NRT-dpa cross sections applied to estimate the integrated dpa for Fe, Cr and Ni are in good agreement with established computer codes and data. A similar study carried out for polyatomic material, SiC, shows encouraging results. In this case, it is observed that the NRT approach with average lattice displacement energy of 25 eV coupled with the damage energies from the K-P option of SRIM-2013 gives reliable displacement cross sections and integrated dpa for various reactor spectra. The source term of neutron damage can be equivalently determined in the units of dpa by simulating self-ion bombardment. This shows that the information of primary recoils obtained from CRaD can be reliably applied to estimate the integrated dpa and damage assessment studies in accelerator-based self-ion irradiation experiments of structural materials. This study would help to advance the investigation of possible correlations between the damages induced by ions and reactor neutrons.

Simulating the characteristics of tropical cyclones over the South West Indian Ocean using a Stretched-Grid Global Climate Model

NASA Astrophysics Data System (ADS)

Maoyi, Molulaqhooa L.; Abiodun, Babatunde J.; Prusa, Joseph M.; Veitch, Jennifer J.

2018-03-01

Tropical cyclones (TCs) are one of the most devastating natural phenomena. This study examines the capability of a global climate model with grid stretching (CAM-EULAG, hereafter CEU) in simulating the characteristics of TCs over the South West Indian Ocean (SWIO). In the study, CEU is applied with a variable increment global grid that has a fine horizontal grid resolution (0.5° × 0.5°) over the SWIO and coarser resolution (1° × 1°—2° × 2.25°) over the rest of the globe. The simulation is performed for the 11 years (1999-2010) and validated against the Joint Typhoon Warning Center (JTWC) best track data, global precipitation climatology project (GPCP) satellite data, and ERA-Interim (ERAINT) reanalysis. CEU gives a realistic simulation of the SWIO climate and shows some skill in simulating the spatial distribution of TC genesis locations and tracks over the basin. However, there are some discrepancies between the observed and simulated climatic features over the Mozambique channel (MC). Over MC, CEU simulates a substantial cyclonic feature that produces a higher number of TC than observed. The dynamical structure and intensities of the CEU TCs compare well with observation, though the model struggles to produce TCs with a deep pressure centre as low as the observed. The reanalysis has the same problem. The model captures the monthly variation of TC occurrence well but struggles to reproduce the interannual variation. The results of this study have application in improving and adopting CEU for seasonal forecasting over the SWIO.

Modelling the Holderness coast, eastern England: Past, present and future

NASA Astrophysics Data System (ADS)

Barkwith, A.; Limber, P. W.; Thomas, C. W.; Murray, A.; Jordan, H. M.; Ellis, M. A.

2012-12-01

The Holderness coast of eastern Yorkshire, England, is the most rapidly eroding coastline in Europe. Erosion can locally exceed 10 m in a single year and rates average 0.5 to 3 m yr-1, generally increasing from north to south. Pinned in the north by a chalk headland, the soft till coastline has a characteristic open spiral form terminated by a spit to the south. Erosion currently threatens local communities and infrastructure, including nationally important gas installations. Interventions to restrict local erosion usually result in enhanced erosion in adjacent, unprotected sections of coast, mirroring morphology seen on the large scale. We have initiated a modelling study to investigate the key controls on the form and evolution of this coastline, and its response to climate change, building on the Coastline Evolution Model (CEM) developed at Duke University, NC. We have adapted the CEM to permit an ensemble of simulations to be undertaken, based upon modified offshore wave climates, initial conditions and forcing factors. The CEM follows a standard 1d approach, where the cross-shore is collapsed into a single data point, allowing the planform shoreline shape and dynamics to be simulated. The model facilitates study of a coast with variable erosion rates, and enables simulation of coastline evolution when sediment is supplied from an eroding shoreface. Additionally, the CEM is adapted to use an observed two year, offshore wave climate data set as input. Initial work focussed on reconstruction of current coastline shape from an ensemble of hypothetical early Holocene shoreface positions and past wave climates. First order reconstruction of shoreline shape was achieved using several differing initial conditions and wave climates. For the majority of successful simulations, a steady state was noted for proceeding years, where erosion proceeds at an equal rate along the length of the coast south of the headland. Together with a sensitivity analysis, the derivation of the current coastline provided initial conditions for the second phase of the work: simulating the morphological response of the Holderness coastline to possible future changes in climate over the next century. An ensemble of future possible wave climate perturbations was generated from predictions of the likely response of the North Sea to future climate change over the next century, and applied linearly to the observed wave climate as each simulation progressed. The ensemble output was compared to a baseline simulation, run for a century under current wave climate, to assess the impact of predicted future climate on coastal erosion. Although this study does not currently take into account the changes in storm frequency, rises in sea level or the anthropogenic inputs that could influence the results, the initial output indicates erosional rates over the next century are likely to be retarded for the Holderness coastline under a changing climate.

Plasma-Sheath-Surface Dynamics

DTIC Science & Technology

1990-09-01

Particle Simulations of Cross-Field Plasma Sheaths," Phys. Fluids B, pp 1069- 1082 , May 1990. IJ. Morey and C.K. Birdsall, "Traveling Wave-Tube Simulation...Theilhaber, "Analytic Solutions and Particle Simulations of Cross-Field Plasma Sheaths," Phys. Fluids B, pp 1069- 1082 , May 1990. S.E. Parker, and C.K

Poor chest compression quality with mechanical compressions in simulated cardiopulmonary resuscitation: a randomized, cross-over manikin study.

PubMed

Blomberg, Hans; Gedeborg, Rolf; Berglund, Lars; Karlsten, Rolf; Johansson, Jakob

2011-10-01

Mechanical chest compression devices are being implemented as an aid in cardiopulmonary resuscitation (CPR), despite lack of evidence of improved outcome. This manikin study evaluates the CPR-performance of ambulance crews, who had a mechanical chest compression device implemented in their routine clinical practice 8 months previously. The objectives were to evaluate time to first defibrillation, no-flow time, and estimate the quality of compressions. The performance of 21 ambulance crews (ambulance nurse and emergency medical technician) with the authorization to perform advanced life support was studied in an experimental, randomized cross-over study in a manikin setup. Each crew performed two identical CPR scenarios, with and without the aid of the mechanical compression device LUCAS. A computerized manikin was used for data sampling. There were no substantial differences in time to first defibrillation or no-flow time until first defibrillation. However, the fraction of adequate compressions in relation to total compressions was remarkably low in LUCAS-CPR (58%) compared to manual CPR (88%) (95% confidence interval for the difference: 13-50%). Only 12 out of the 21 ambulance crews (57%) applied the mandatory stabilization strap on the LUCAS device. The use of a mechanical compression aid was not associated with substantial differences in time to first defibrillation or no-flow time in the early phase of CPR. However, constant but poor chest compressions due to failure in recognizing and correcting a malposition of the device may counteract a potential benefit of mechanical chest compressions. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

Stable high absorption metamaterial for wide-angle incidence of terahertz wave

NASA Astrophysics Data System (ADS)

Du, Qiujiao; Zeng, Zuoxun; Xiang, Dong; Lv, Tao; Zhang, Guangyong; Yang, Hongwu

2014-04-01

We propose a metamaterial based on metallic Jerusalem cross and cross-wire structures for realizing relatively stable high absorption with respect to the wide angle incidence of both polarized terahertz (THz) waves. Numerical simulations are carried out to verify the proposed absorber. For both transverse electric and transverse magnetic polarizations, absorptions around 0.93 THz reach nearly up to unity under normal incidence and maintain above 97% over a wide incidence angle range. The THz absorber can be easily micro-fabricated due to a thickness about 40 times smaller than operating wavelength. The proposed metamaterial is a promising candidate as absorbing element in THz thermal imager, due to its wide angle, stable high absorption and very thin thickness.

Rapid equilibrium sampling initiated from nonequilibrium data.

PubMed

Huang, Xuhui; Bowman, Gregory R; Bacallado, Sergio; Pande, Vijay S

2009-11-24

Simulating the conformational dynamics of biomolecules is extremely difficult due to the rugged nature of their free energy landscapes and multiple long-lived, or metastable, states. Generalized ensemble (GE) algorithms, which have become popular in recent years, attempt to facilitate crossing between states at low temperatures by inducing a random walk in temperature space. Enthalpic barriers may be crossed more easily at high temperatures; however, entropic barriers will become more significant. This poses a problem because the dominant barriers to conformational change are entropic for many biological systems, such as the short RNA hairpin studied here. We present a new efficient algorithm for conformational sampling, called the adaptive seeding method (ASM), which uses nonequilibrium GE simulations to identify the metastable states, and seeds short simulations at constant temperature from each of them to quantitatively determine their equilibrium populations. Thus, the ASM takes advantage of the broad sampling possible with GE algorithms but generally crosses entropic barriers more efficiently during the seeding simulations at low temperature. We show that only local equilibrium is necessary for ASM, so very short seeding simulations may be used. Moreover, the ASM may be used to recover equilibrium properties from existing datasets that failed to converge, and is well suited to running on modern computer clusters.

Bivariate discrete beta Kernel graduation of mortality data.

PubMed

Mazza, Angelo; Punzo, Antonio

2015-07-01

Various parametric/nonparametric techniques have been proposed in literature to graduate mortality data as a function of age. Nonparametric approaches, as for example kernel smoothing regression, are often preferred because they do not assume any particular mortality law. Among the existing kernel smoothing approaches, the recently proposed (univariate) discrete beta kernel smoother has been shown to provide some benefits. Bivariate graduation, over age and calendar years or durations, is common practice in demography and actuarial sciences. In this paper, we generalize the discrete beta kernel smoother to the bivariate case, and we introduce an adaptive bandwidth variant that may provide additional benefits when data on exposures to the risk of death are available; furthermore, we outline a cross-validation procedure for bandwidths selection. Using simulations studies, we compare the bivariate approach proposed here with its corresponding univariate formulation and with two popular nonparametric bivariate graduation techniques, based on Epanechnikov kernels and on P-splines. To make simulations realistic, a bivariate dataset, based on probabilities of dying recorded for the US males, is used. Simulations have confirmed the gain in performance of the new bivariate approach with respect to both the univariate and the bivariate competitors.

Tapered microelectrode array system for dielectrophoretically filtration: fabrication, characterization, and simulation study

NASA Astrophysics Data System (ADS)

Buyong, Muhamad Ramdzan; Larki, Farhad; Takamura, Yuzuru; Majlis, Burhanuddin Yeop

2017-10-01

This paper presents the fabrication, characterization, and simulation of microelectrode arrays system with tapered profile having an aluminum surface for dielectrophoresis (DEP)-based manipulation of particles. The proposed structure demonstrates more effective electric field gradient compared with its counterpart with untapered profile. Therefore, according to the asymmetric distribution of the electric field in the active region of microelectrode, it produces more effective particle manipulation. The tapered aluminum microelectrode array (TAMA) fabrication process uses a state-of-the-art technique in the formation of the resist's taper profile. The performance of TAMA with various sidewall profile angles (5 deg to 90 deg) was analyzed through finite-element method numerical simulations to offer a better understanding of the origin of the sidewall profile effect. The ability of capturing and manipulating of the device was examined through modification of the Clausius-Mossotti factor and cross-over frequency (f). The fabricated system has been particularly implemented for filtration of particles with a desired diameter from a mixture of particles with three different diameters in an aqueous medium. The microelectrode system with tapered side wall profile offers a more efficient platform for particle manipulation and sensing applications compared with the conventional microelectrode systems.

Improving the home health acute-care hospitalization quality measure.

PubMed

Schade, Charles P; Brehm, John G

2010-06-01

(1) To demonstrate average length of service (ALOS) bias in the currently used acute-care hospitalization (ACH) home health quality measure, limiting comparability across agencies, and (2) to propose alternative ACH measures. Secondary analysis of Medicare home health service data 2004-2007; convenience sample of Medicare fee-for-service hospital discharges. Cross-sectional analysis and patient-level simulation. We aggregated outcome and ALOS data from 2,347 larger Medicare-certified home health agencies (HHAs) in the United States between 2004 and 2007, and calculated risk-adjusted monthly ACH rates. We used multiple regression to identify agency characteristics associated with ACH. We simulated ACH during and immediately after home health care using patient and agency characteristics similar to those in the actual data, comparing the existing measure with alternative fixed-interval measures. Of agency characteristics studied, ALOS had by far the highest partial correlation with the current ACH measure (r(2)=0.218, p<.0001). We replicated the correlation between ACH and ALOS in the patient-level simulation. We found no correlation between ALOS and the alternative measures. Alternative measures do not exhibit ALOS bias and would be appropriate for comparing HHA ACH rates with one another or over time.

Comparison of 2D simulations of detached divertor plasmas with divertor Thomson measurements in the DIII-D tokamak

DOE PAGES

Rognlien, Thomas D.; McLean, Adam G.; Fenstermacher, Max E.; ...

2017-01-27

A modeling study is reported using new 2D data from DIII-D tokamak divertor plasmas and improved 2D transport model that includes large cross-field drifts for the numerically difficult H-mode regime. The data set, which spans a range of plasmas densities for both forward and reverse toroidal magnetic field (B t) over a range of plasma densities, is provided by divertor Thomson scattering (DTS). Measurements utilizing X-point sweeping give corresponding 2D profiles of electron temperature (T e) and density (n e) across both divertor legs for individual discharges. The calculations show the same features of in/out plasma asymmetries as measured inmore » the experiment, with the normal B t direction (ion ∇B drift toward the X-point) having higher n e and lower T e in the inner divertor leg than outer. Corresponding emission data for total radiated power shows a strong inner-divertor/outer-divertor asymmetry that is reproduced by the simulations. Furthermore, these 2D UEDGE transport simulations are enabled for steep-gradient H-mode conditions by newly implemented algorithms to control isolated grid-scale irregularities.« less

Respiratory-Induced Haemodynamic Changes: A Contributing Factor to IVC Filter Penetration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Laborda, Alicia, E-mail: alaborda@unizar.es; Kuo, William T., E-mail: wkuo@stanford.edu; Ioakeim, Ignatios, E-mail: ignacio.ioakim@hotmail.es

2015-10-15

PurposeThe purpose of the study is to evaluate the influence of respiratory-induced vena caval hemodynamic changes on filter migration/penetration.Materials and MethodsAfter placement of either a Gunther Tulip or Celect IVC filter, 101 consecutive patients scheduled for filter retrieval were prospectively enrolled in this study. Pre-retrieval CT scans were used to assess filter complications and to calculate cross-sectional area in three locations: at level of filter strut fixation, 3 cm above and 3 cm below. A 3D finite element simulation was constructed on these data and direct IVC pressure was recorded during filter retrieval. Cross-sectional areas and pressures of the vena cava weremore » measured during neutral breathing and in Valsalva maneuver and identified filter complications were recorded. A statistical analysis of these variables was then performed.ResultsDuring Valsalva maneuvers, a 60 % decrease of the IVC cross-sectional area and a fivefold increase in the IVC pressure were identified (p < 0.001). There was a statistically significant difference in the reduction of the cross-sectional area at the filter strut level (p < 0.001) in patient with filter penetration. Difficulty in filter retrieval was higher in penetrated or tilted filters (p < 0.001; p = 0.005). 3D computational models showed significant IVC deformation around the filter during Valsalva maneuver.ConclusionCaval morphology and hemodynamics are clearly affected by Valsalva maneuvers. A physiological reduction of IVC cross-sectional area is associated with higher risk of filter penetration, despite short dwell times. Physiologic data should be used to improve future filter designs to remain safely implanted over longer dwell times.« less

Resolution dependence of cross-tropopause ozone transport over east Asia

NASA Astrophysics Data System (ADS)

Büker, M. L.; Hitchman, Matthew H.; Tripoli, Gregory J.; Pierce, R. B.; Browell, E. V.; Avery, M. A.

2005-02-01

Detailed analysis of mesoscale transport of ozone across the tropopause over east Asia during the spring of 2001 is conducted using regional simulations with the University of Wisconsin Nonhydrostatic Modeling System (UWNMS), in situ flight data, and a new two-scale approach to diagnosing this ozone flux. From late February to early April, synoptic activity regularly deformed the tropopause, leading to observations of ozone-rich (concentration exceeding 80 ppbv) stratospheric intrusions and filaments at tropospheric altitudes. Since model resolution is generally not sufficient to capture detailed small-scale mixing processes, an upper bound on the flux is proposed by assuming that there exists a dynamical division by spatial scale, above which the wind conservatively advects large-scale structures, while below it the wind leads to irreversible transport through nonconservative random strain. A formulation for this diagnosis is given and applied to ozone flux across the dynamical tropopause. Simulations were chosen to correspond with DC-8 flight 15 on 26-27 March over east Asia during the Transport and Chemical Evolution Over the Pacific (TRACE-P) campaign. Local and domain-averaged flux values using this method agree with other numerical and observational studies in similar synoptic environments. Sensitivity to numerical resolution, prescribed divisional spatial scale, and potential vorticity (PV) level is investigated. Divergent residual flow in regions of high ozone, and PV gradients tended to maximize flux magnitudes. We estimated the domain-integrated flow of ozone out of the lowermost stratosphere to be about 0.127 Tg/day. Spectral analysis of the wind field lends support for utilization of this dynamical division in this methodology.

Formation factor in Bentheimer and Fontainebleau sandstones: Theory compared with pore-scale numerical simulations

NASA Astrophysics Data System (ADS)

Ghanbarian, Behzad; Berg, Carl F.

2017-09-01

Accurate quantification of formation resistivity factor F (also called formation factor) provides useful insight into connectivity and pore space topology in fully saturated porous media. In particular the formation factor has been extensively used to estimate permeability in reservoir rocks. One of the widely applied models to estimate F is Archie's law (F = ϕ- m in which ϕ is total porosity and m is cementation exponent) that is known to be valid in rocks with negligible clay content, such as clean sandstones. In this study we compare formation factors determined by percolation and effective-medium theories as well as Archie's law with numerical simulations of electrical resistivity on digital rock models. These digital models represent Bentheimer and Fontainebleau sandstones and are derived either by reconstruction or directly from micro-tomographic images. Results show that the universal quadratic power law from percolation theory accurately estimates the calculated formation factor values in network models over the entire range of porosity. However, it crosses over to the linear scaling from the effective-medium approximation at the porosity of 0.75 in grid models. We also show that the effect of critical porosity, disregarded in Archie's law, is nontrivial, and the Archie model inaccurately estimates the formation factor in low-porosity homogeneous sandstones.

Performance of the general circulation models in simulating temperature and precipitation over Iran

NASA Astrophysics Data System (ADS)

Abbasian, Mohammadsadegh; Moghim, Sanaz; Abrishamchi, Ahmad

2018-03-01

General Circulation Models (GCMs) are advanced tools for impact assessment and climate change studies. Previous studies show that the performance of the GCMs in simulating climate variables varies significantly over different regions. This study intends to evaluate the performance of the Coupled Model Intercomparison Project phase 5 (CMIP5) GCMs in simulating temperature and precipitation over Iran. Simulations from 37 GCMs and observations from the Climatic Research Unit (CRU) were obtained for the period of 1901-2005. Six measures of performance including mean bias, root mean square error (RMSE), Nash-Sutcliffe efficiency (NSE), linear correlation coefficient (r), Kolmogorov-Smirnov statistic (KS), Sen's slope estimator, and the Taylor diagram are used for the evaluation. GCMs are ranked based on each statistic at seasonal and annual time scales. Results show that most GCMs perform reasonably well in simulating the annual and seasonal temperature over Iran. The majority of the GCMs have a poor skill to simulate precipitation, particularly at seasonal scale. Based on the results, the best GCMs to represent temperature and precipitation simulations over Iran are the CMCC-CMS (Euro-Mediterranean Center on Climate Change) and the MRI-CGCM3 (Meteorological Research Institute), respectively. The results are valuable for climate and hydrometeorological studies and can help water resources planners and managers to choose the proper GCM based on their criteria.

Effect of bar cross-section geometry on stress distribution in overdenture-retaining system simulating horizontal misfit and bone loss.

PubMed

Spazzin, Aloísio Oro; Costa, Ana Rosa; Correr, Américo Bortolazzo; Consani, Rafael Leonardo Xediek; Correr-Sobrinho, Lourenço; dos Santos, Mateus Bertolini Fernandes

2013-08-09

This study evaluated the influence of cross-section geometry of the bar framework on the distribution of static stresses in an overdenture-retaining bar system simulating horizontal misfit and bone loss. Three-dimensional FE models were created including two titanium implants and three cross-section geometries (circular, ovoid or Hader) of bar framework placed in the anterior part of a severely resorbed jaw. One model with 1.4-mm vertical loss of the peri-implant tissue was also created. The models set were exported to mechanical simulation software, where horizontal displacement (10, 50 or 100 μm) was applied simulating the settling of the framework, which suffered shrinkage during the laboratory procedures. The bar material used for the bar framework was a cobalt--chromium alloy. For evaluation of bone loss effect, only the 50-μm horizontal misfit was simulated. Data were qualitatively and quantitatively evaluated using von Mises stress for the mechanical part and maximum principal stress and μ-strain for peri-implant bone tissue given by the software. Stresses were concentrated along the bar and in the join between the bar and cylinder. In the peri-implant bone tissue, the μ-strain was higher in the cervical third. Higher stress levels and μ-strain were found for the models using the Hader bar. The bone loss simulated presented considerable increase on maximum principal stresses and μ-strain in the peri-implant bone tissue. In addition, for the amplification of the horizontal misfit, the higher complexity of the bar cross-section geometry and bone loss increases the levels of static stresses in the peri-implant bone tissue. Copyright © 2013 Elsevier Ltd. All rights reserved.

Influence of switches and crossings on wheel profile evolution in freight vehicles

NASA Astrophysics Data System (ADS)

Casanueva, Carlos; Doulgerakis, Emmanouil; Jönsson, Per-Anders; Stichel, Sebastian

2014-05-01

Wheel reprofiling costs for freight vehicles are a major issue in Sweden, reducing the profitability of freight traffic operations and therefore hindering the modal shift needed for achieving reduced emissions. In order to understand the damage modes in freight vehicles, uniform wear prediction with Archard's wear law has been studied in a two-axle timber transport wagon, and simulation results have been compared to measurements. Challenges of wheel wear prediction in freight wagons are discussed, including the influence of block brakes and switches and crossings. The latter have a major influence on the profile evolution of this case study, so specific simulations are performed and a thorough discussion is carried out.

Virtual street-crossing performance in persons with multiple sclerosis: Feasibility and task performance characteristics.

PubMed

Stratton, M E; Pilutti, L A; Crowell, J A; Kaczmarski, H; Motl, R W

2017-01-02

Multiple sclerosis (MS) is a neurological disease that commonly results in physical and cognitive dysfunction. Accordingly, MS might impact the ability to safely cross the street. The purpose of this study was to examine the feasibility of a simulated street-crossing task in persons with MS and to determine differences in street-crossing performance between persons with MS and non-MS controls. 26 participants with MS (median Expanded Disability Status Scale [EDSS] score = 3.5) and 19 controls completed 40 trials of a virtual street-crossing task. There were 2 crossing conditions (i.e., no distraction and phone conversation), and participants performed 20 trials per condition. Participants were instructed that the goal of the task was to cross the street successfully (i.e., without being hit be a vehicle). The primary outcome was task feasibility, assessed as completion and adverse events. Secondary outcomes were measures of street-crossing performance. Overall, the simulated street-crossing task was feasible (i.e., 90% completion, no adverse events) in participants with MS. Participants with MS waited longer and were less attentive to traffic before entering the street compared with controls (all P < .05). Participants with MS also took longer to cross the street and were closer to oncoming vehicles when exiting the street compared to controls (all P < .05). When distracted, all participants took longer to initiate crossing, took longer to cross the street, and made more head turns while crossing (all P < .05). There were no significant group by condition interaction effects (all P > .05). A virtual street-crossing task is feasible for studying street-crossing behavior in persons with mild MS and most individuals with moderate MS. Virtual street-crossing performance is impaired in persons with MS compared to controls; however, persons with MS do not appear to be more vulnerable to a distracting condition. The virtual reality environment presents a safe and useful setting for understanding pedestrian behavior in persons with MS.

Intubation simulation with a cross-sectional visual guidance.

PubMed

Rhee, Chi-Hyoung; Kang, Chul Won; Lee, Chang Ha

2013-01-01

We present an intubation simulation with deformable objects and a cross-sectional visual guidance using a general haptic device. Our method deforms the tube model when it collides with the human model. Mass-Spring model with the Euler integration is used for the tube deformation. For the trainee's more effective understanding of the intubation process, we provide a cross-sectional view of the oral cavity and the tube. Our system also applies a stereoscopic rendering to improve the depth perception and the reality of the simulation.

Pilot Interactions in an Over-Constrained Conflict Scenario as Studied in a Piloted Simulation of Autonomous Aircraft Operations

NASA Technical Reports Server (NTRS)

Wing, David J.; Barhydt, Richard; Barmore, Bryan; Krishnamurthy, Karthik

2003-01-01

Feasibility and safety of autonomous aircraft operations were studied in a multi-piloted simulation of overconstrained traffic conflicts to determine the need for, and utility of, priority flight rules to maintain safety in this extraordinary and potentially hazardous situation. An overconstrained traffic conflict is one in which the separation assurance objective is incompatible with other objectives. In addition, a proposed scheme for implementing priority flight rules by staggering the alerting time between the two aircraft in conflict was tested for effectiveness. The feasibility study was conducted through a simulation in the Air Traffic Operations Laboratory at the NASA Langley Research Center. This research activity is a continuation of the Distributed Air-Ground Traffic Management feasibility analysis reported in the 4th USA/Europe Air Traffic Management R&D Seminar in December 2001 (paper #48). The over-constrained conflict scenario studied here consisted of two piloted aircraft that were assigned an identical en-route waypoint arrival time and altitude crossing restriction. The simulation results indicated that the pilots safely resolved the conflict without the need for a priority flight rule system. Occurrences of unnecessary maneuvering near the common waypoint were traced to false conflict alerts, generated as the result of including waypoint constraint information in the broadcast data link message issued from each aircraft. This result suggests that, in the conservative interests of safety, broadcast intent information should be based on the commanded trajectory and not on the Flight Management System flight plan, to which the aircraft may not actually adhere. The use of priority flight rules had no effect on the percentage of the aircraft population meeting completely predictable which aircraft in a given pair would meet the constraints and which aircraft would make the first maneuver to yield right-of-way. Therefore, the proposed scheme for implementing priority flight rules through staggering the alerting time between the two aircraft was completely effective. The data and observations from this experiment, together with results from the previously reported study, support the feasibility of autonomous aircraft operations.

Formulation and Analysis of the Quantum Radar Cross Section

NASA Astrophysics Data System (ADS)

Brandsema, Matthew J.

In radar, the amount of returns that an object sends back to the receiver after being struck by an electromagnetic wave is characterized by what is known as the radar cross section, denoted by sigma typically. There are many mechanisms that affect how much radiation is reflected back in the receiver direction, such as reflectivity, physical contours and dimensions, attenuation properties of the materials, projected cross sectional area and so on. All of these characteristics are lumped together in a single value of sigma, which has units of m2. Stealth aircrafts for example are designed to minimize its radar cross section and return the smallest amount of radiation possible in the receiver direction. A new concept has been introduced called quantum radar, that uses correlated quantum states of photons as well as the unique properties of quantum mechanics to ascertain information on a target at a distance. At the time of writing this dissertation, quantum radar is very much in its infancy. There still exist fundamental questions about the feasibility of its implementation, especially in the microwave spectrum. However, what has been theoretically determined, is that quantum radar has a fundamental advantage over classical radar in terms of resolution and returns in certain regimes. Analogous to the classical radar cross section (CRCS), the concept of the quantum radar cross section (QRCS) has been introduced. This quantity measures how an object looks to a quantum radar be describing how a single photon, or small cluster of photons scatter off of a macroscopic target. Preliminary simulations of the basic quantum radar cross section equation have yielded promising results showing an advantage in sidelobe response in comparison to the classical RCS. This document expands upon this idea by providing insight as to where this advantage originates, as well as developing more rigorous simulation analysis, and greatly expanding upon the theory. The expanded theory presented in this document includes re-deriving the QRCS formula to be a general bistatic formula, as the current equation is only valid for monostatic radar geometries. This re-derivation process also leads to the addition of terms that capture the effect of photon polarization, something that is not properly taken into account in the current literature. Most importantly, a new formulation of the QRCS formula will be derived that includes writing the equation in terms of Fourier transforms. This has a profound impact on the analysis of the theory of the QRCS as it allows for the derivation of closed form solutions of certain geometries, something that has never been possible due to the form of the current QRCS equation. All together, this document will provide a complete and general theory of the QRCS. After deriving the necessary equations, there will be extensive work in the utilization of these equations in deriving geometry dependent responses and comparing the closed form solutions to the classical solutions as well as comparing the solutions to the numerical simulations. The current literature relies exclusively on numerical simulations to analyze the behavior of the QRCS. The simulations done do not take into account the macroscopic nature of the target. Because the atoms are so numerous, and because of the underlying Fourier transform relationship, there are many issues of sampling that must be taken into account when performing simulations. Simulating an object with too few samples results in an aliased and incorrect version of the QRCS response. An extensive error analysis is presented which ensures an accurate simulation result based on sample number. Finally, possible future work endeavors will be presented which include QRCS diffraction, shadowing, more accurate simulation concepts, and the effect of quantum tunneling on the QRCS response.

Determination of channel change for selected streams, Maricopa County, Arizona

USGS Publications Warehouse

Capesius, Joseph P.; Lehman, Ted W.

2002-01-01

In Maricopa County, Arizona, 10 sites on seven streams were studied to determine the lateral and vertical change of the channel. Channel change was studied over time scales ranging from individual floods to decades using cross-section surveys, discharge measurements, changes in the point of zero flow, and repeat photography. All of the channels showed some change in cross-section area or hydraulic radius over the time scales studied, but the direction and mag-nitude of change varied considerably from one flow, or series of flows, to another. The documentation of cross-section geometry for streams in Maricopa County for long-term monitoring was begun in this study.

Modeling the lava heat flux during severe effusive volcanic eruption: An important impact on surface air quality

NASA Astrophysics Data System (ADS)

Durand, Jonathan; Tulet, Pierre; Leriche, Maud; Bielli, Soline; Villeneuve, Nicolas; Muro, Andrea Di; Fillipi, Jean-Baptiste

2014-10-01

The Reunion Island experienced its biggest eruption of Piton de la Fournaise Volcano during April 2007. Known as the eruption of the century, this event degassed more than 230 kt of SO2. Theses emissions led to important health issues, accompanied by environmental and infrastructure degradations. This modeling study uses the mesoscale chemical model MesoNH-C to simulate the transport of gaseous SO2 between 2 and 7 April, with a focus on the influence of heat fluxes from lava. This study required the implementation of a reduced chemical scheme, a basic surface model, and an estimation of lava heat fluxes in the atmospheric model. The model was able to reproduce general trends of this eruption, in particular the crossing of trade wind inversion, the SO2 surface concentration (with highest peak of SO2 of 600 μg m-3 observed on 4 April for western Reunion locations), and the wet deposition associated to rainfall. A sensitivity study shows that without heat fluxes over the vent and the lava flow, simulated SO2 surface concentration are up to 45 times higher than observed.

What Can Repeated Cross-Sectional Studies Tell Us about Student Growth? Research Report. ETS RR-12-17

ERIC Educational Resources Information Center

Almond, Russell G.; Sinharay, Sandip

2012-01-01

To answer questions about how students' proficiencies are changing over time, educational researchers are looking for data sources that span many years. Clearly, for answering questions about student growth, a longitudinal study--in which a single sample is followed over many years--is preferable to repeated cross-sectional samples--in which a…

HFIR Fuel Casting Support

DOE Office of Scientific and Technical Information (OSTI.GOV)

Imhoff, Seth D.; Gibbs, Paul Jacob; Solis, Eunice Martinez

Process exploration for fuel production for the High Flux Isotope Reactor (HFIR) using cast LEU-10wt.%Mo as an initial processing step has just begun. This project represents the first trials concerned with casting design and quality. The studies carried out over the course of this year and information contained in this report address the initial mold development to be used as a starting point for future operations. In broad terms, the final billet design is that of a solid rolling blank with an irregular octagonal cross section. The work covered here is a comprehensive view of the initial attempts to producemore » a sound casting. This report covers the efforts to simulate, predict, cast, inspect, and revise the initial mold design.« less

On the kinetics of anaerobic power

PubMed Central

2012-01-01

Background This study investigated two different mathematical models for the kinetics of anaerobic power. Model 1 assumes that the work power is linear with the work rate, while Model 2 assumes a linear relationship between the alactic anaerobic power and the rate of change of the aerobic power. In order to test these models, a cross country skier ran with poles on a treadmill at different exercise intensities. The aerobic power, based on the measured oxygen uptake, was used as input to the models, whereas the simulated blood lactate concentration was compared with experimental results. Thereafter, the metabolic rate from phosphocreatine break down was calculated theoretically. Finally, the models were used to compare phosphocreatine break down during continuous and interval exercises. Results Good similarity was found between experimental and simulated blood lactate concentration during steady state exercise intensities. The measured blood lactate concentrations were lower than simulated for intensities above the lactate threshold, but higher than simulated during recovery after high intensity exercise when the simulated lactate concentration was averaged over the whole lactate space. This fit was improved when the simulated lactate concentration was separated into two compartments; muscles + internal organs and blood. Model 2 gave a better behavior of alactic energy than Model 1 when compared against invasive measurements presented in the literature. During continuous exercise, Model 2 showed that the alactic energy storage decreased with time, whereas Model 1 showed a minimum value when steady state aerobic conditions were achieved. During interval exercise the two models showed similar patterns of alactic energy. Conclusions The current study provides useful insight on the kinetics of anaerobic power. Overall, our data indicate that blood lactate levels can be accurately modeled during steady state, and suggests a linear relationship between the alactic anaerobic power and the rate of change of the aerobic power. PMID:22830586

Cross Slip of Dislocation Loops in GaN Under Shear

DTIC Science & Technology

2014-03-01

methodology 2.1 Discrete dislocation dynamic ( DDD ) simula- tions In this work, we employ a modified version of the ParaDiS code [15, 16]. First a...plane. 4 Conclusions The cross slip mechanisms of different dislocation loops have been studied via DDD simulations using the type <a> active

Behavior Treatment of Deviant Sex-Role Behaviors in a Male Child.

ERIC Educational Resources Information Center

Rekers, George A.; And Others

This study demonstrated reinforcement control over pronounced feminine behaviors in a male child who had been psychologically evaluated as manifesting "childhood cross-gender identity." Reinforcement control over cross-gender behavior was demonstrated by identifying some behavioral treatment conditions under which feminine behaviors could be…

Comparison of direct DNA strand breaks induced by low energy electrons with different inelastic cross sections

NASA Astrophysics Data System (ADS)

Li, Jun-Li; Li, Chun-Yan; Qiu, Rui; Yan, Cong-Chong; Xie, Wen-Zhang; Zeng, Zhi; Tung, Chuan-Jong

2013-09-01

In order to study the influence of inelastic cross sections on the simulation of direct DNA strand breaks induced by low energy electrons, six different sets of inelastic cross section data were calculated and loaded into the Geant4-DNA code to calculate the DNA strand break yields under the same conditions. The six sets of the inelastic cross sections were calculated by applying the dielectric function method of Emfietzoglou's optical-data treatments, with two different optical datasets and three different dispersion models, using the same Born corrections. Results show that the inelastic cross sections have a notable influence on the direct DNA strand break yields. The yields simulated with the inelastic cross sections based on Hayashi's optical data are greater than those based on Heller's optical data. The discrepancies are about 30-45% for the single strand break yields and 45-80% for the double strand break yields. Among the yields simulated with cross sections of the three different dispersion models, generally the greatest are those of the extended-Drude dispersion model, the second are those of the extended-oscillator-Drude dispersion model, and the last are those of the Ashley's δ-oscillator dispersion model. For the single strand break yields, the differences between the first two are very little and the differences between the last two are about 6-57%. For the double strand break yields, the biggest difference between the first two can be about 90% and the differences between the last two are about 17-70%.

Visual acuity with simulated and real astigmatic defocus.

PubMed

Ohlendorf, Arne; Tabernero, Juan; Schaeffel, Frank

2011-05-01

To compare the effects of "simulated" and "real" spherical and astigmatic defocus on visual acuity (VA). VA was determined with letter charts that were blurred by calculated spherical or astigmatic defocus (simulated defocus) or were seen through spherical or astigmatic trial lenses (real defocus). Defocus was simulated using ZEMAX and the Liou-Brennan eye model. Nine subjects participated [mean age, 27.2 ± 1.8 years; logarithm of the minimum angle of resolution (logMAR), -0.1]. Three different experiments were conducted in which VA was reduced by 20% (logMAR 0.0), 50% (logMAR 0.2), or 75% (logMAR 0.5) by either (1) imposing positive spherical defocus, (2) imposing positive and negative astigmatic defocus in three axes (0, 45, and 90°), and (3) imposing cross-cylinder defocus in the same three axes as in (2). Experiment (1): there were only minor differences in VA with simulated and real positive spherical defocus. Experiment (2): simulated astigmatic defocus reduced VA twice as much as real astigmatic defocus in all tested axes (p < 0.01 in all cases). Experiment (3): simulated cross-cylinder defocus reduced VA much more than real cross-cylinder defocus (p < 0.01 in all cases), similarly for all three tested axes. The visual system appears more tolerant against "real" spherical, astigmatic, and cross-cylinder defocus than against "simulated" blur. Possible reasons could be (1) limitations in the modeling procedures to simulate defocus, (2) higher ocular aberrations, and (3) fluctuations of accommodation. However, the two optical explanations (2) and (3) cannot account for the magnitude of the effect, and (1) was carefully analyzed. It is proposed that something may be special about the visual processing of real astigmatic and cross-cylinder defocus-because they have less effect on VA than simulations predict.

A structural study of F-actin - filamin networks

NASA Astrophysics Data System (ADS)

Ahrens-Braunstein, Ashley; Nguyen, Lam; Hirst, Linda

2010-03-01

The cell's ability to move and contract is attributed to the semi-flexible filamentous protein, F -actin, one of the three filaments in the cytoskeleton. Actin bundling can be formed by a cross-linking actin binding protein (ABP) filamin. By examining filamin's cross-linking abilities at different concentrations and molar ratios, we can study the flexibility, structure and multiple network formations created when cross-linking F-actin with this protein. We have studied the phase diagram of this protein system using fluorescence microscopy, analyzing the network structures observed in the context of a coarse grained molecular dynamics simulation carried out by our group.

Macrosegregation Resulting from Directional Solidification Through an Abrupt Change in Cross-Sections

NASA Technical Reports Server (NTRS)

Lauer, M.; Poirier, D. R.; Ghods, M.; Tewari, S. N.; Grugel, R. N.

2017-01-01

Simulations of the directional solidification of two hypoeutectic alloys (Al-7Si alloy and Al-19Cu) and resulting macrosegregation patterns are presented. The casting geometries include abrupt changes in cross-section from a larger width of 9.5 mm to a narrower 3.2 mm width then through an expansion back to a width of 9.5 mm. The alloys were chosen as model alloys because they have similar solidification shrinkages, but the effect of Cu on changing the density of the liquid alloy is about an order of magnitude greater than that of Si. The simulations compare well with experimental castings that were directionally solidified in a graphite mold in a Bridgman furnace. In addition to the simulations of the directional solidification in graphite molds, some simulations were effected for solidification in an alumina mold. This study showed that the mold must be included in numerical simulations of directional solidification because of its effect on the temperature field and solidification. For the model alloys used for the study, the simulations clearly show the interaction of the convection field with the solidifying alloys to produce a macrosegregation pattern known as "steepling" in sections with a uniform width. Details of the complex convection- and segregation-patterns at both the contraction and expansion of the cross-sectional area are revealed by the computer simulations. The convection and solidification through the expansions suggest a possible mechanism for the formation of stray grains. The computer simulations and the experimental castings have been part of on-going ground-based research with the goal of providing necessary background for eventual experiments aboard the ISS. For casting practitioners, the results of the simulations demonstrate that computer simulations should be applied to reveal interactions between alloy solidification properties, solidification conditions, and mold geometries on macrosegregation. The simulations also presents the possibility of engineering the mold-material to avoid, or mitigate, the effects of thermosolutal convection and macrosegregation by selecting a mold material with suitable thermal properties, especially its thermal conductivity.

Shuttle orbiter radar cross-sectional analysis

NASA Technical Reports Server (NTRS)

Cooper, D. W.; James, R.

1979-01-01

Theoretical and model simulation studies on signal to noise levels and shuttle radar cross section are described. Pre-mission system calibrations, system configuration, and postmission system calibration of the tracking radars are described. Conversion of target range, azimuth, and elevation into radar centered east north vertical position coordinates are evaluated. The location of the impinging rf energy with respect to the target vehicles body axis triad is calculated. Cross section correlation between the two radars is presented.

Computer simulation program for medium-energy ion scattering and Rutherford backscattering spectrometry

NASA Astrophysics Data System (ADS)

Nishimura, Tomoaki

2016-03-01

A computer simulation program for ion scattering and its graphical user interface (MEISwin) has been developed. Using this program, researchers have analyzed medium-energy ion scattering and Rutherford backscattering spectrometry at Ritsumeikan University since 1998, and at Rutgers University since 2007. The main features of the program are as follows: (1) stopping power can be chosen from five datasets spanning several decades (from 1977 to 2011), (2) straggling can be chosen from two datasets, (3) spectral shape can be selected as Gaussian or exponentially modified Gaussian, (4) scattering cross sections can be selected as Coulomb or screened, (5) simulations adopt the resonant elastic scattering cross section of 16O(4He, 4He)16O, (6) pileup simulation for RBS spectra is supported, (7) natural and specific isotope abundances are supported, and (8) the charge fraction can be chosen from three patterns (fixed, energy-dependent, and ion fraction with charge-exchange parameters for medium-energy ion scattering). This study demonstrates and discusses the simulations and their results.

Idealized Quasi-Linear Convective Storms Crossing Over Coastlines

NASA Astrophysics Data System (ADS)

Lombardo, K.

2015-12-01

As organized coastal convective storms develop over land and move over a coastal ocean, their storm-scale structures, intensity, and associated weather threats evolve. This study aims to identify and quantify the fundamental mechanisms controlling the evolution of coastal quasi-linear convective systems (QLCSs) as they move offshore, as well as characterize the environmental conditions that support a phase space of life cycles. Results from this work will contribute to the improved predictability of these potentially severe warm season storms. The current work uses the Cloud Model 1 (CM1; Bryan and Fritsch 2002) to systematically study the interaction between QLCSs and marine atmospheric boundary layers (MABLs) associated with the coastal ocean in an idealized numerical framework. The initial simulations are run in 2-dimensions, with a 250 m horizontal resolution and a vertical resolution ranging from 100 m in the lowest 3000 m stretched to 250 m at the top of the 20 km domain. All simulations use the Weisman-Klemp analytic sounding as the base-state sounding profile in conjunction with an RKW-type wind profile. To create a numerical environment representative of a coastal region, the western half of the 800 km domain is configured to represent a land surface, while the eastern half represents a water surface. A series of sensitivity experiments are conducted to explore the influence of sea surface temperature and the associated marine atmospheric boundary layer on coastal QLCSs. Sea surface temperature values are selected to represent values observed within the Mid-Atlantic Bight coastal waters during the warm season, ranging from 14oC ('early summer') to 23oC ('late summer'). The numerical MABL is allowed to develop in time through surface heat fluxes. This presentation will discuss preliminary results from the 'early summer' and 'late summer' SST sensitivity experiments. Preliminary simulations indicate that the 'early summer' QLCS moves more quickly than the 'late summer' storm once the systems are over the MABL. Differences in propagation speed will be discussed in the context of lifting mechanisms along the leading edge of the QLCSs. Differences in the intensity of the convection will be discussed as well.

Aqua-planet simulations of the formation of the South Atlantic convergence zone

NASA Technical Reports Server (NTRS)

Nieto Ferreira, Rosana; Chao, Winston C.

2013-01-01

The impact of Amazon Basin convection and cold fronts on the formation and maintenance of the South Atlantic convergence zone (SACZ) is studied using aqua-planet simulations with a general circulation model. In the model, a circular patch of warm sea-surface temperature (SST) is used to mimic the effect of the Amazon Basin on South American monsoon convection. The aqua-planet simulations were designed to study the effect of the strength and latitude of Amazon Basin convection on the formation of the SACZ. The simulations indicate that the strength of the SACZ increases as the Amazon convection intensifies and is moved away from the equator. Of the two controls studied here, the latitude of the Amazon convection exerts the strongest effect on the strength of the SACZ. An analysis of the synoptic-scale variability in the simulations shows the importance of frontal systems in the formation of the aqua-planet SACZ. Composite time series of frontal systems that occurred in the simulations show that a robust SACZ occurs when fronts penetrate into the subtropics and become stationary there as they cross eastward of the longitude of the Amazon Basin. Moisture convergence associated with these frontal systems produces rainfall not along the model SACZ region and along a large portion of the northern model Amazon Basin. Simulations in which the warm SST patch was too weak or too close to the equator did not produce frontal systems that extended into the tropics and became stationary, and did not form a SACZ. In the model, the SACZ forms as Amazon Basin convection strengthens and migrates far enough southward to allow frontal systems to penetrate into the tropics and stall over South America. This result is in agreement with observations that the SACZ tends to form after the onset of the monsoon season in the Amazon Basin.

Bora-driven potential vorticity banners over the Adriatic

NASA Astrophysics Data System (ADS)

Grubii, Vanda

2004-10-01

A case study is presented of the secondary potential vorticity (PV) banners over the northern Adriatic that occurred in an early stage of a bora on 7 November 1999 during the Mesoscale Alpine Programme (MAP) Special Observation Period. The dynamics and structure of the lee-side and cross-mountain flow past the Dinaric Alps were investigated using data collected in a dual-aircraft (NCAR Electra and NOAA P-3) MAP Intensive Observing Period 15 mission over the Adriatic and high-resolution numerical simulations. The observational study employs flight-level, dropsonde, and Scanning Aerosol Backscatter Lidar data. The observed flow structure is compared with simulations results of the COAMPS model run at a horizontal resolution of 3 km. The Dinaric Alps, the north-west/south-east oriented coastal mountain range of Croatia, has an irregular ridge line with a number of peaks in the range of 1.5-2 km with several prominent mountain passes. The identified jet and wake structure within the east-north-easterly bora over the Adriatic was found to be well correlated with the upwind distribution of mountain passes and peaks. The wake flow structure was found also to be in excellent agreement with the climatological profile of the bora strength along the Croatian coast. The attendant secondary PV banners separating individual jets and wakes, diagnosed by computing PV from the flight-level data, were found to have a characteristic horizontal scale of 10-25 km, and a maximum amplitude of up to ~6 pvu within the boundary layer. Over the open sea, the thickness of the boundary layer, within which the east-north-easterly bora also achieved its maximum strength, was approximately 1 km. Detailed comparison with the numerical model results shows that, at the horizontal resolution of 3 km, the COAMPS model reproduces well the overall flow structure. The COAMPS-simulated PV field was found to be in good agreement with the PV derived from observations. The differences in substructure between simulated and experimentally derived PV profiles derive from minor differences between modelled and observed velocity and potential temperature profiles, which are subsequently accentuated by computing differentiated quantities such as vorticity and potential temperature gradients. The high predictability and steadiness of the PV banners, and a good correlation with the geometry of the upwind topography, support the orographic generation mechanism of PV with dissipation in hydraulic jumps and gravity-wave breaking regions as the likely main source of PV.

Reconfigurable Control with Neural Network Augmentation for a Modified F-15 Aircraft

NASA Technical Reports Server (NTRS)

Burken, John J.; Williams-Hayes, Peggy; Kaneshige, John T.; Stachowiak, Susan J.

2006-01-01

Description of the performance of a simplified dynamic inversion controller with neural network augmentation follows. Simulation studies focus on the results with and without neural network adaptation through the use of an F-15 aircraft simulator that has been modified to include canards. Simulated control law performance with a surface failure, in addition to an aerodynamic failure, is presented. The aircraft, with adaptation, attempts to minimize the inertial cross-coupling effect of the failure (a control derivative anomaly associated with a jammed control surface). The dynamic inversion controller calculates necessary surface commands to achieve desired rates. The dynamic inversion controller uses approximate short period and roll axis dynamics. The yaw axis controller is a sideslip rate command system. Methods are described to reduce the cross-coupling effect and maintain adequate tracking errors for control surface failures. The aerodynamic failure destabilizes the pitching moment due to angle of attack. The results show that control of the aircraft with the neural networks is easier (more damped) than without the neural networks. Simulation results show neural network augmentation of the controller improves performance with aerodynamic and control surface failures in terms of tracking error and cross-coupling reduction.

Application of State Quantization-Based Methods in HEP Particle Transport Simulation

NASA Astrophysics Data System (ADS)

Santi, Lucio; Ponieman, Nicolás; Jun, Soon Yung; Genser, Krzysztof; Elvira, Daniel; Castro, Rodrigo

2017-10-01

Simulation of particle-matter interactions in complex geometries is one of the main tasks in high energy physics (HEP) research. An essential aspect of it is an accurate and efficient particle transportation in a non-uniform magnetic field, which includes the handling of volume crossings within a predefined 3D geometry. Quantized State Systems (QSS) is a family of numerical methods that provides attractive features for particle transportation processes, such as dense output (sequences of polynomial segments changing only according to accuracy-driven discrete events) and lightweight detection and handling of volume crossings (based on simple root-finding of polynomial functions). In this work we present a proof-of-concept performance comparison between a QSS-based standalone numerical solver and an application based on the Geant4 simulation toolkit, with its default Runge-Kutta based adaptive step method. In a case study with a charged particle circulating in a vacuum (with interactions with matter turned off), in a uniform magnetic field, and crossing up to 200 volume boundaries twice per turn, simulation results showed speedups of up to 6 times in favor of QSS while it being 10 times slower in the case with zero volume boundaries.

Adaptive Control Using Neural Network Augmentation for a Modified F-15 Aircraft

NASA Technical Reports Server (NTRS)

Burken, John J.; Williams-Hayes, Peggy; Karneshige, J. T.; Stachowiak, Susan J.

2006-01-01

Description of the performance of a simplified dynamic inversion controller with neural network augmentation follows. Simulation studies focus on the results with and without neural network adaptation through the use of an F-15 aircraft simulator that has been modified to include canards. Simulated control law performance with a surface failure, in addition to an aerodynamic failure, is presented. The aircraft, with adaptation, attempts to minimize the inertial cross-coupling effect of the failure (a control derivative anomaly associated with a jammed control surface). The dynamic inversion controller calculates necessary surface commands to achieve desired rates. The dynamic inversion controller uses approximate short period and roll axis dynamics. The yaw axis controller is a sideslip rate command system. Methods are described to reduce the cross-coupling effect and maintain adequate tracking errors for control surface failures. The aerodynamic failure destabilizes the pitching moment due to angle of attack. The results show that control of the aircraft with the neural networks is easier (more damped) than without the neural networks. Simulation results show neural network augmentation of the controller improves performance with aerodynamic and control surface failures in terms of tracking error and cross-coupling reduction.

Reconfigurable Control with Neural Network Augmentation for a Modified F-15 Aircraft

NASA Technical Reports Server (NTRS)

Burken, John J.

2007-01-01

This paper describes the performance of a simplified dynamic inversion controller with neural network supplementation. This 6 DOF (Degree-of-Freedom) simulation study focuses on the results with and without adaptation of neural networks using a simulation of the NASA modified F-15 which has canards. One area of interest is the performance of a simulated surface failure while attempting to minimize the inertial cross coupling effect of a [B] matrix failure (a control derivative anomaly associated with a jammed or missing control surface). Another area of interest and presented is simulated aerodynamic failures ([A] matrix) such as a canard failure. The controller uses explicit models to produce desired angular rate commands. The dynamic inversion calculates the necessary surface commands to achieve the desired rates. The simplified dynamic inversion uses approximate short period and roll axis dynamics. Initial results indicated that the transient response for a [B] matrix failure using a Neural Network (NN) improved the control behavior when compared to not using a neural network for a given failure, However, further evaluation of the controller was comparable, with objections io the cross coupling effects (after changes were made to the controller). This paper describes the methods employed to reduce the cross coupling effect and maintain adequate tracking errors. The IA] matrix failure results show that control of the aircraft without adaptation is more difficult [leas damped) than with active neural networks, Simulation results show Neural Network augmentation of the controller improves performance in terms of backing error and cross coupling reduction and improved performance with aerodynamic-type failures.

Evaluation and Improvement of Polar WRF simulations using the observed atmospheric profiles in the Arctic seasonal ice zone

NASA Astrophysics Data System (ADS)

Liu, Z.; Schweiger, A. J. B.

2016-12-01

We use the Polar Weather Research and Forecasting (WRF) model to simulate atmospheric conditions during the Seasonal Ice Zone Reconnaissance Survey (SIZRS) over the Beaufort Sea in the summer since 2013. With the 119 SIZRS dropsondes in the18 cross sections along the 150W and 140W longitude lines, we evaluate the performance of WRF simulations and two forcing data sets, the ERA-Interim reanalysis and the Global Forecast System (GFS) analysis, and explore the improvement of the Polar WRF performance when the dropsonde data are assimilated using observation nudging. Polar WRF, ERA-Interim, and GFS can reproduce the general features of the observed mean atmospheric profiles, such as low-level temperature inversion, low-level jet (LLJ) and specific humidity inversion. The Polar WRF significantly improves the mean LLJ, with a lower and stronger jet and a larger turning angle than the forcing, which is likely related to the lower values of the boundary layer diffusion in WRF than in the global models such as ECMWF and GFS. The Polar WRF simulated relative humidity closely resembles the forcing datasets while having large biases compared to observations. This suggests that the performance of Polar WRF and its forecasts in this region are limited by the quality of the forcing dataset and that the assimilation of more and better-calibrated observations, such as humidity data, is critical for their improvement. We investigate the potential of assimilating the SIZRS dropsonde dataset in improving the weather forecast over the Beaufort Sea. A simple local nudging approach is adopted. Along SIZRS flight cross sections, a set of Polar WRF simulations are performed with varying number of variables and dropsonde profiles assimilated. Different model physics are tested to examine the sensitivity of different aspects of model physics, such as boundary layer schemes, cloud microphysics, and radiation parameterization, to data assimilation. The comparison of the Polar WRF runs with assimilation and the runs without assimilation demonstrates the importance of SIZRS dropsonde data to the improvement of atmospheric analysis and reanalysis such as GFS and ERA-Interim, and consequently to the improvement of weather forecast in this region.

The Satiating Properties of Pork are not Affected by Cooking Methods, Sousvide Holding Time or Mincing in Healthy Men—A Randomized Cross-Over Meal Test Study

PubMed Central

Kehlet, Ursula; Mitra, Bhaskar; Aaslyng, Margit D.

2017-01-01

Low temperature long time (LTLT) sous-vide cooking may modify meat proteins in a way that could promote satiety. We investigated the effects of (1) cooking method (LTLT 58 °C vs. oven 160 °C), (2) LTLT holding time (17 h vs. 72 min), and (3) pork structure, LTLT 58 °C for 17 h (minced vs. roast) on appetite regulation and in vitro protein digestibility. In a cross-over study, 37 healthy men consumed four meals containing pork: LTLT-cooked roast, 58 °C, 72 min; LTLT-cooked roast, 58 °C, 17 h; and, oven-cooked roast, 160 °C to a core temperature of 58 °C and LTLT-cooked minced patties, 58 °C, 17 h. Ad libitum energy intake (EI) after three hours was the primary endpoint. Moreover, subjective appetite sensations were assessed. Protein digestibility was determined in an in vitro simulated digestion model. Ad libitum EI did not differ between the meals. Furthermore, appetite ratings were not clearly affected. LTLT cooking for 72 min increased the proteolytic rate in the early gastric phase during digestion as compared to LTLT cooking for 17 h or oven cooking. In conclusion, LTLT cooking, LTLT holding time, and pork structure did not affect ad libitum EI. However, LTLT cooking at 58 °C for 72 min seemed to enhance in vitro protein digestibility. PMID:28846600

The Satiating Properties of Pork are not Affected by Cooking Methods, Sousvide Holding Time or Mincing in Healthy Men-A Randomized Cross-Over Meal Test Study.

PubMed

Kehlet, Ursula; Mitra, Bhaskar; Ruiz Carrascal, Jorge; Raben, Anne; Aaslyng, Margit D

2017-08-26

Low temperature long time (LTLT) sous-vide cooking may modify meat proteins in a way that could promote satiety. We investigated the effects of (1) cooking method (LTLT 58 °C vs. oven 160 °C), (2) LTLT holding time (17 h vs. 72 min), and (3) pork structure, LTLT 58 °C for 17 h (minced vs. roast) on appetite regulation and in vitro protein digestibility. In a cross-over study, 37 healthy men consumed four meals containing pork: LTLT-cooked roast, 58 °C, 72 min; LTLT-cooked roast, 58 °C, 17 h; and, oven-cooked roast, 160 °C to a core temperature of 58 °C and LTLT-cooked minced patties, 58 °C, 17 h. Ad libitum energy intake (EI) after three hours was the primary endpoint. Moreover, subjective appetite sensations were assessed. Protein digestibility was determined in an in vitro simulated digestion model. Ad libitum EI did not differ between the meals. Furthermore, appetite ratings were not clearly affected. LTLT cooking for 72 min increased the proteolytic rate in the early gastric phase during digestion as compared to LTLT cooking for 17 h or oven cooking. In conclusion, LTLT cooking, LTLT holding time, and pork structure did not affect ad libitum EI. However, LTLT cooking at 58 °C for 72 min seemed to enhance in vitro protein digestibility.

The salinity signature of the cross-shelf exchanges in the Southwestern Atlantic Ocean: Numerical simulations.

PubMed

Matano, Ricardo P; Combes, Vincent; Piola, Alberto R; Guerrero, Raul; Palma, Elbio D; Ted Strub, P; James, Corinne; Fenco, Harold; Chao, Yi; Saraceno, Martin

2014-11-01

A high-resolution model is used to characterize the dominant patterns of sea surface salinity (SSS) variability generated by the freshwater discharges of the Rio de la Plata (RdlP) and the Patos/Mirim Lagoon in the southwestern Atlantic region. We identify three dominant modes of SSS variability. The first two, which have been discussed in previous studies, represent the seasonal and the interannual variations of the freshwater plumes over the continental shelf. The third mode of SSS variability, which has not been discussed hitherto, represents the salinity exchanges between the shelf and the deep ocean. A diagnostic study using floats and passive tracers identifies the pathways taken by the freshwater plumes. During the austral winter (JJA) , the plumes leave the shelf region north of the BMC. During the austral summer (DJF), the plumes are entrained more directly into the BMC. A sensitivity study indicates that the high - frequency component of the wind stress forcing controls the vertical structure of the plumes while the low-frequency component of the wind stress forcing and the interannual variations of the RdlP discharge controls the horizontal structure of the plumes. Dynamical analysis reveals that the cross-shelf flow has a dominant barotropic structure and, therefore, the SSS anomalies detected by Aquarius represent net mass exchanges between the shelf and the deep ocean. The net cross-shelf volume flux is 1.21 Sv. This outflow is largely compensated by an inflow from the Patagonian shelf.

The salinity signature of the cross-shelf exchanges in the Southwestern Atlantic Ocean: Numerical simulations

PubMed Central

Matano, Ricardo P; Combes, Vincent; Piola, Alberto R; Guerrero, Raul; Palma, Elbio D; Ted Strub, P; James, Corinne; Fenco, Harold; Chao, Yi; Saraceno, Martin

2014-01-01

A high-resolution model is used to characterize the dominant patterns of sea surface salinity (SSS) variability generated by the freshwater discharges of the Rio de la Plata (RdlP) and the Patos/Mirim Lagoon in the southwestern Atlantic region. We identify three dominant modes of SSS variability. The first two, which have been discussed in previous studies, represent the seasonal and the interannual variations of the freshwater plumes over the continental shelf. The third mode of SSS variability, which has not been discussed hitherto, represents the salinity exchanges between the shelf and the deep ocean. A diagnostic study using floats and passive tracers identifies the pathways taken by the freshwater plumes. During the austral winter (JJA), the plumes leave the shelf region north of the BMC. During the austral summer (DJF), the plumes are entrained more directly into the BMC. A sensitivity study indicates that the high-frequency component of the wind stress forcing controls the vertical structure of the plumes while the low-frequency component of the wind stress forcing and the interannual variations of the RdlP discharge controls the horizontal structure of the plumes. Dynamical analysis reveals that the cross-shelf flow has a dominant barotropic structure and, therefore, the SSS anomalies detected by Aquarius represent net mass exchanges between the shelf and the deep ocean. The net cross-shelf volume flux is 1.21 Sv. This outflow is largely compensated by an inflow from the Patagonian shelf. PMID:26213673

The salinity signature of the cross-shelf exchanges in the Southwestern Atlantic Ocean: Numerical simulations

NASA Astrophysics Data System (ADS)

Matano, Ricardo P.; Combes, Vincent; Piola, Alberto R.; Guerrero, Raul; Palma, Elbio D.; Ted Strub, P.; James, Corinne; Fenco, Harold; Chao, Yi; Saraceno, Martin

2014-11-01

A high-resolution model is used to characterize the dominant patterns of sea surface salinity (SSS) variability generated by the freshwater discharges of the Rio de la Plata (RdlP) and the Patos/Mirim Lagoon in the southwestern Atlantic region. We identify three dominant modes of SSS variability. The first two, which have been discussed in previous studies, represent the seasonal and the interannual variations of the freshwater plumes over the continental shelf. The third mode of SSS variability, which has not been discussed hitherto, represents the salinity exchanges between the shelf and the deep ocean. A diagnostic study using floats and passive tracers identifies the pathways taken by the freshwater plumes. During the austral winter (JJA), the plumes leave the shelf region north of the BMC. During the austral summer (DJF), the plumes are entrained more directly into the BMC. A sensitivity study indicates that the high-frequency component of the wind stress forcing controls the vertical structure of the plumes while the low-frequency component of the wind stress forcing and the interannual variations of the RdlP discharge controls the horizontal structure of the plumes. Dynamical analysis reveals that the cross-shelf flow has a dominant barotropic structure and, therefore, the SSS anomalies detected by Aquarius represent net mass exchanges between the shelf and the deep ocean. The net cross-shelf volume flux is 1.21 Sv. This outflow is largely compensated by an inflow from the Patagonian shelf.

Quantitative evaluation of cross correlation between two finite-length time series with applications to single-molecule FRET.

PubMed

Hanson, Jeffery A; Yang, Haw

2008-11-06

The statistical properties of the cross correlation between two time series has been studied. An analytical expression for the cross correlation function's variance has been derived. On the basis of these results, a statistically robust method has been proposed to detect the existence and determine the direction of cross correlation between two time series. The proposed method has been characterized by computer simulations. Applications to single-molecule fluorescence spectroscopy are discussed. The results may also find immediate applications in fluorescence correlation spectroscopy (FCS) and its variants.

Training the elderly in pedestrian safety: Transfer effect between two virtual reality simulation devices.

PubMed

Maillot, Pauline; Dommes, Aurélie; Dang, Nguyen-Thong; Vienne, Fabrice

2017-02-01

A virtual-reality training program has been developed to help older pedestrians make safer street-crossing decisions in two-way traffic situations. The aim was to develop a small-scale affordable and transportable simulation device that allowed transferring effects to a full-scale device involving actual walking. 20 younger adults and 40 older participants first participated in a pre-test phase to assess their street crossings using both full-scale and small-scale simulation devices. Then, a trained older group (20 participants) completed two 1.5-h training sessions with the small-scale device, whereas an older control group received no training (19 participants). Thereafter, the 39 older trained and untrained participants took part in a 1.5-h post-test phase again with both devices. Pre-test phase results suggested significant differences between both devices in the group of older participants only. Unlike younger participants, older participants accepted more often to cross and had more collisions on the small-scale simulation device than on the full-scale one. Post-test phase results showed that training older participants on the small-scale device allowed a significant global decrease in the percentage of accepted crossings and collisions on both simulation devices. But specific improvements regarding the way participants took into account the speed of approaching cars and vehicles in the far lane were notable only on the full-scale simulation device. The findings suggest that the small-scale simulation device triggers a greater number of unsafe decisions compared to a full-scale one that allows actual crossings. But findings reveal that such a small-scale simulation device could be a good means to improve the safety of street-crossing decisions and behaviors among older pedestrians, suggesting a transfer of learning effect between the two simulation devices, from training people with a miniature device to measuring their specific progress with a full-scale one. Copyright © 2016 Elsevier Ltd. All rights reserved.

Similarities and differences of serotonin and its precursors in their interactions with model membranes studied by molecular dynamics simulation

NASA Astrophysics Data System (ADS)

Wood, Irene; Martini, M. Florencia; Pickholz, Mónica

2013-08-01

In this work, we report a molecular dynamics (MD) simulations study of relevant biological molecules as serotonin (neutral and protonated) and its precursors, tryptophan and 5-hydroxy-tryptophan, in a fully hydrated bilayer of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidyl-choline (POPC). The simulations were carried out at the fluid lamellar phase of POPC at constant pressure and temperature conditions. Two guest molecules of each type were initially placed at the water phase. We have analyzed, the main localization, preferential orientation and specific interactions of the guest molecules within the bilayer. During the simulation run, the four molecules were preferentially found at the water-lipid interphase. We found that the interactions that stabilized the systems are essentially hydrogen bonds, salt bridges and cation-π. None of the guest molecules have access to the hydrophobic region of the bilayer. Besides, zwitterionic molecules have access to the water phase, while protonated serotonin is anchored in the interphase. Even taking into account that these simulations were done using a model membrane, our results suggest that the studied molecules could not cross the blood brain barrier by diffusion. These results are in good agreement with works that show that serotonin and Trp do not cross the BBB by simple diffusion.

Safety effectiveness of pedestrian crossing enhancements : final report.

DOT National Transportation Integrated Search

2017-02-01

Over the last decade, the Oregon DOT and other agencies have systematically implemented many pedestrian crossing enhancements (PCEs) across the state. This study explored the safety performance of these enhanced crossing in Oregon. Detailed data were...

Classification of micro-Doppler signatures of human aquatic activity through simulation and measurement using transferred learning

NASA Astrophysics Data System (ADS)

Kim, Youngwook; Park, Jinhee; Moon, Taesup

2017-05-01

Remote detection of human aquatic activity can be applied not only to ocean surveillance but also to rescue operations. When a human is illuminated by electromagnetic waves, a Doppler signal is generated from his or her moving parts. Indeed, bodily movements are what make humans' micro-Doppler signatures unique, offering a chance to classify human motions. Certain studies have analyzed and attempted to recognize human aquatic activity, but the topic has yet to be extensively studied. In the present research, we simulate the micro-Doppler signatures of a swimming person in an attempt to investigate those signatures' characteristics. We model human arms as point scatterers while assuming a simple arm motion. By means of such a simulation, we can obtain spectrograms from a swimming person, then extend our measurement to multiple participants. Measurements are taken from five aquatic activities featuring five participants, comprising freestyle, backstroke, and breaststroke, pulling a boat, and rowing. As suggested by the simulation study, the spectrograms for the five activities show different micro-Doppler signatures; hence, we propose to classify them using a deep convolutional neural network (DCNN). In particular, we suggest the use of a transfer-learned DCNN, which is based on a DCNN pretrained by a large-scale RGB image dataset that is, ImageNet. The classification accuracy is calculated using fivefold cross-validation on our dataset. We find that a DCNN trained through transfer learning achieves the highest accuracy while also providing a significant performance boost over the conventional classification method.

GPU-accelerated Red Blood Cells Simulations with Transport Dissipative Particle Dynamics.

PubMed

Blumers, Ansel L; Tang, Yu-Hang; Li, Zhen; Li, Xuejin; Karniadakis, George E

2017-08-01

Mesoscopic numerical simulations provide a unique approach for the quantification of the chemical influences on red blood cell functionalities. The transport Dissipative Particles Dynamics (tDPD) method can lead to such effective multiscale simulations due to its ability to simultaneously capture mesoscopic advection, diffusion, and reaction. In this paper, we present a GPU-accelerated red blood cell simulation package based on a tDPD adaptation of our red blood cell model, which can correctly recover the cell membrane viscosity, elasticity, bending stiffness, and cross-membrane chemical transport. The package essentially processes all computational workloads in parallel by GPU, and it incorporates multi-stream scheduling and non-blocking MPI communications to improve inter-node scalability. Our code is validated for accuracy and compared against the CPU counterpart for speed. Strong scaling and weak scaling are also presented to characterizes scalability. We observe a speedup of 10.1 on one GPU over all 16 cores within a single node, and a weak scaling efficiency of 91% across 256 nodes. The program enables quick-turnaround and high-throughput numerical simulations for investigating chemical-driven red blood cell phenomena and disorders.

The influence of size, clearance, cartilage properties, thickness and hemiarthroplasty on the contact mechanics of the hip joint with biphasic layers.

PubMed

Li, Junyan; Stewart, Todd D; Jin, Zhongmin; Wilcox, Ruth K; Fisher, John

2013-06-21

Computational models of the natural hip joint are needed to examine and optimise tissue sparing interventions where the natural cartilage remains part of the bearing surfaces. Although the importance of interstitial fluid pressurisation in the performance of cartilage has long been recognized, few studies have investigated the time dependent interstitial fluid pressurisation in a three dimensional natural hip joint model. The primary aim of this study was to develop a finite element model of the natural hip incorporating the biphasic cartilage layers that was capable of simulating the joint response over a prolonged physiological loading period. An initial set of sensitivity studies were also undertaken to investigate the influence of hip size, clearance, cartilage properties, thickness and hemiarthroplasty on the contact mechanics of the joint. The contact stress, contact area, fluid pressure and fluid support ratio were calculated and cross-compared between models with different parameters to evaluate their influence. It was found that the model predictions for the period soon after loading were sensitive to the hip size, clearance, cartilage aggregate modulus, thickness and hemiarthroplasty, while the time dependent behaviour over 3000s was influenced by the hip clearance and cartilage aggregate modulus, permeability, thickness and hemiarthroplasty. The modelling methods developed in this study provide a basic platform for biphasic simulation of the whole hip joint onto which more sophisticated material models or other input parameters could be added in the future. Copyright © 2013 The Authors. Published by Elsevier Ltd.. All rights reserved.

Reviews Book: Voyage to the Heart of the Matter: The ATLAS Experiment at CERN Equipment: SEP Spectroscope Books: Quantum Gods / The Universe Places to visit: The Royal Institution of Great Britain Book: What is this Thing Called Science? Book: Don't be Such a Scientist: Talking Substance in the Age of Style Equipment: La Crosse Anemometer Book: Wonder and Delight Web Watch

NASA Astrophysics Data System (ADS)

2010-05-01

WE RECOMMEND SEP Spectroscope Flatpacked classroom equipment for pupils aged 10 and over Quantum Gods Book attacks spiritualism and religion with physics The Universe Study of whether physics alone can explain origin of universe La Crosse Anemometer Handheld monitor is packed with useful features Wonder and Delight Essays in science education in honour of Eric Rogers WORTH A LOOK Voyage to the Heart of the Matter: The ATLAS Experiment at CERN Pop-up book explains background to complex physics The Royal Institution of Great Britain RI museum proves interesting but not ideal for teaching What is this Thing Called Science? Theory and history of science in an opinionated study Don't be Such a Scientist: Talking Substance in the Age of Style Explanation of how science is best communicated to the public WEB WATCH Particle physics simulations vary in complexity, usefulness and how well they work

Hill crossing during preheating after hilltop inflation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Antusch, Stefan; Nolde, David; Orani, Stefano, E-mail: stefan.antusch@unibas.ch, E-mail: david.nolde@unibas.ch, E-mail: stefano.orani@unibas.ch

2015-06-01

In ''hilltop inflation'', inflation takes place when the inflaton field slowly rolls from close to a maximum of its potential (i.e. the ''hilltop'') towards its minimum. When the inflaton potential is associated with a phase transition, possible topological defects produced during this phase transition, such as domain walls, are efficiently diluted during inflation. It is typically assumed that they also do not reform after inflation, i.e. that the inflaton field stays on its side of the ''hill'', finally performing damped oscillations around the minimum of the potential. In this paper we study the linear and the non-linear phases of preheatingmore » after hilltop inflation. We find that the fluctuations of the inflaton field during the tachyonic oscillation phase grow strong enough to allow the inflaton field to form regions in position space where it crosses ''over the top of the hill'' towards the ''wrong vacuum''. We investigate the formation and behaviour of these overshooting regions using lattice simulations: rather than durable domain walls, these regions form oscillon-like structures (i.e. localized bubbles that oscillate between the two vacua) which should be included in a careful study of preheating in hilltop inflation.« less

A Cross-Correlational Analysis between Electroencephalographic and End-Tidal Carbon Dioxide Signals: Methodological Issues in the Presence of Missing Data and Real Data Results

PubMed Central

Morelli, Maria Sole; Giannoni, Alberto; Passino, Claudio; Landini, Luigi; Emdin, Michele; Vanello, Nicola

2016-01-01

Electroencephalographic (EEG) irreducible artifacts are common and the removal of corrupted segments from the analysis may be required. The present study aims at exploring the effects of different EEG Missing Data Segment (MDS) distributions on cross-correlation analysis, involving EEG and physiological signals. The reliability of cross-correlation analysis both at single subject and at group level as a function of missing data statistics was evaluated using dedicated simulations. Moreover, a Bayesian-based approach for combining the single subject results at group level by considering each subject’s reliability was introduced. Starting from the above considerations, the cross-correlation function between EEG Global Field Power (GFP) in delta band and end-tidal CO2 (PETCO2) during rest and voluntary breath-hold was evaluated in six healthy subjects. The analysis of simulated data results at single subject level revealed a worsening of precision and accuracy in the cross-correlation analysis in the presence of MDS. At the group level, a large improvement in the results’ reliability with respect to single subject analysis was observed. The proposed Bayesian approach showed a slight improvement with respect to simple average results. Real data results were discussed in light of the simulated data tests and of the current physiological findings. PMID:27809243

Perceptions, training experiences, and preferences of surgical residents toward laparoscopic simulation training: a resident survey.

PubMed

Shetty, Shohan; Zevin, Boris; Grantcharov, Teodor P; Roberts, Kurt E; Duffy, Andrew J

2014-01-01

Simulation training for surgical residents can shorten learning curves, improve technical skills, and expedite competency. Several studies have shown that skills learned in the simulated environment are transferable to the operating room. Residency programs are trying to incorporate simulation into the resident training curriculum to supplement the hands-on experience gained in the operating room. Despite the availability and proven utility of surgical simulators and simulation laboratories, they are still widely underutilized by surgical trainees. Studies have shown that voluntary use leads to minimal participation in a training curriculum. Although there are several simulation tools, there is no clear evidence of the superiority of one tool over the other in skill acquisition. The purpose of this study was to explore resident perceptions, training experiences, and preferences regarding laparoscopic simulation training. Our goal was to profile resident participation in surgical skills simulation, recognize potential barriers to voluntary simulator use, and identify simulation tools and tasks preferred by residents. Furthermore, this study may help to inform whether mandatory/protected training time, as part of the residents' curriculum is essential to enhance participation in the simulation laboratory. A cross-sectional study on general surgery residents (postgraduate years 1-5) at Yale University School of Medicine and the University of Toronto via an online questionnaire was conducted. Overall, 67 residents completed the survey. The institutional review board approved the methods of the study. Overall, 95.5% of the participants believed that simulation training improved their laparoscopic skills. Most respondents (92.5%) perceived that skills learned during simulation training were transferrable to the operating room. Overall, 56.7% of participants agreed that proficiency in a simulation curriculum should be mandatory before operating room experience. The simulation laboratory was most commonly used during work hours; lack of free time during work hours was most commonly cited as a reason for underutilization. Factors influencing use of the simulation laboratory in order of importance were the need for skill development, an interest in minimally invasive surgery, mandatory/protected time in a simulation environment as part of the residency program curriculum, a recommendation by an attending surgeon, and proximity of the simulation center. The most preferred simulation tool was the live animal model followed by cadaveric tissue. Virtual reality simulators were among the least-preferred (25%) simulation tools. Most residents (91.0%) felt that mandatory/protected time in a simulation environment should be introduced into resident training protocols. Mandatory and protected time in a simulation environment as part of the resident training curriculum may improve participation in simulation training. A comprehensive curriculum, which includes the use of live animals, cadaveric tissue, and virtual reality simulators, may enhance the laparoscopic training experience and interest level of surgical trainees. Copyright © 2014 Association of Program Directors in Surgery. Published by Elsevier Inc. All rights reserved.

Compressive Sensing with Cross-Validation and Stop-Sampling for Sparse Polynomial Chaos Expansions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huan, Xun; Safta, Cosmin; Sargsyan, Khachik

Compressive sensing is a powerful technique for recovering sparse solutions of underdetermined linear systems, which is often encountered in uncertainty quanti cation analysis of expensive and high-dimensional physical models. We perform numerical investigations employing several com- pressive sensing solvers that target the unconstrained LASSO formulation, with a focus on linear systems that arise in the construction of polynomial chaos expansions. With core solvers of l1 ls, SpaRSA, CGIST, FPC AS, and ADMM, we develop techniques to mitigate over tting through an automated selection of regularization constant based on cross-validation, and a heuristic strategy to guide the stop-sampling decision. Practical recommendationsmore » on parameter settings for these tech- niques are provided and discussed. The overall method is applied to a series of numerical examples of increasing complexity, including large eddy simulations of supersonic turbulent jet-in-cross flow involving a 24-dimensional input. Through empirical phase-transition diagrams and convergence plots, we illustrate sparse recovery performance under structures induced by polynomial chaos, accuracy and computational tradeoffs between polynomial bases of different degrees, and practi- cability of conducting compressive sensing for a realistic, high-dimensional physical application. Across test cases studied in this paper, we find ADMM to have demonstrated empirical advantages through consistent lower errors and faster computational times.« less

Perceptual effects in auralization of virtual rooms

NASA Astrophysics Data System (ADS)

Kleiner, Mendel; Larsson, Pontus; Vastfjall, Daniel; Torres, Rendell R.

2002-05-01

By using various types of binaural simulation (or ``auralization'') of physical environments, it is now possible to study basic perceptual issues relevant to room acoustics, as well to simulate the acoustic conditions found in concert halls and other auditoria. Binaural simulation of physical spaces in general is also important to virtual reality systems. This presentation will begin with an overview of the issues encountered in the auralization of room and other environments. We will then discuss the influence of various approximations in room modeling, in particular, edge- and surface scattering, on the perceived room response. Finally, we will discuss cross-modal effects, such as the influence of visual cues on the perception of auditory cues, and the influence of cross-modal effects on the judgement of ``perceived presence'' and the rating of room acoustic quality.

Using Patient Case Video Vignettes to Improve Students’ Understanding of Cross-cultural Communication

PubMed Central

Cryder, Brian; Mazan, Jennifer; Quiñones-Boex, Ana; Cyganska, Angelika

2017-01-01

Objective. To develop, implement, and assess whether simulated patient case videos improve students’ understanding of and attitudes toward cross-cultural communication in health care. Design. Third-year pharmacy students (N=159) in a health care communications course participated in a one-hour lecture and two-hour workshop on the topic of cross-cultural communication. Three simulated pharmacist-patient case vignettes highlighting cross-cultural communication barriers, the role of active listening, appropriate use of medical interpreters, and useful models to overcome communication barriers were viewed and discussed in groups of 20 students during the workshop. Assessment. A pre-lecture and post-workshop assessed the effect on students’ understanding of and attitudes toward cross-cultural communication. Understanding of cross-cultural communication concepts increased significantly, as did comfort level with providing cross-cultural care. Conclusion. Use of simulated patient case videos in conjunction with an interactive workshop improved pharmacy students' understanding of and comfort level with cross-cultural communication skills and can be useful tools for cultural competency training in the curriculum. PMID:28496276

Proceedings of a Workshop on Cosmogenic Nuclide Production Rates

NASA Technical Reports Server (NTRS)

Englert, Peter A. J. (Editor); Reedy, Robert C. (Editor); Michel, Rolf (Editor)

1989-01-01

Abstracts of reports from the proceedings are presented. The presentations were divided into discussion topics. The following general topic areas were used: (1) measured cosmogenic noble gas and radionuclide production rates in meteorite and planetary surface samples; (2) cross-section measurements and simulation experiments; and (3) interpretation of sample studies and simulation experiments.

Requirements of Clinical Journals for Authors’ Disclosure of Financial and Non-Financial Conflicts of Interest: A Cross Sectional Study

PubMed Central

Shawwa, Khaled; Kallas, Romy; Koujanian, Serge; Agarwal, Arnav; Neumann, Ignacio; Alexander, Paul; Tikkinen, Kari A. O.; Guyatt, Gordon; Akl, Elie A.

2016-01-01

Importance It is unclear how medical journals address authors’ financial and non-financial conflict of interest (COI). Objective To assess the policies of clinical journals for disclosure of financial and non-financial COI. Methods Cross sectional study that included both review of public documents as well as a simulation of a manuscript submission for the National Library of Medicine’s “core clinical journals”. The study did not involve human subjects. Investigators who abstracted the data, reviewed “instructions for authors” on the journal website and, in order to reflect the actual implementation of the COI disclosure policy, simulated the submission of a manuscript. Two individuals working in duplicate and independently to abstract information using a standardized data abstraction form, resolved disagreements by discussion or with the help of a third person. Results All but one of 117 core clinical journals had a COI policy. All journals required disclosure of financial COI pertaining to the authors and a minority (35%) asked for financial COI disclosure pertaining to the family members or authors' institution (29%). Over half required the disclosure of at least one form of non-financial COI (57%), out of which only two (3%) specifically referred to intellectual COI. Small minorities of journals (17% and 24% respectively) described a potential impact of disclosed COI and of non-disclosure of COI on the editorial process. Conclusion While financial COI disclosure was well defined by the majority of the journals, many did not have clear policies on disclosure of non-financial COI, disclosure of financial COI of family members and institutions of the authors, and effect of disclosed COI or non-disclosure of COI on editorial policies. PMID:27030966

Requirements of Clinical Journals for Authors' Disclosure of Financial and Non-Financial Conflicts of Interest: A Cross Sectional Study.

PubMed

Shawwa, Khaled; Kallas, Romy; Koujanian, Serge; Agarwal, Arnav; Neumann, Ignacio; Alexander, Paul; Tikkinen, Kari A O; Guyatt, Gordon; Akl, Elie A

2016-01-01

It is unclear how medical journals address authors' financial and non-financial conflict of interest (COI). To assess the policies of clinical journals for disclosure of financial and non-financial COI. Cross sectional study that included both review of public documents as well as a simulation of a manuscript submission for the National Library of Medicine's "core clinical journals". The study did not involve human subjects. Investigators who abstracted the data, reviewed "instructions for authors" on the journal website and, in order to reflect the actual implementation of the COI disclosure policy, simulated the submission of a manuscript. Two individuals working in duplicate and independently to abstract information using a standardized data abstraction form, resolved disagreements by discussion or with the help of a third person. All but one of 117 core clinical journals had a COI policy. All journals required disclosure of financial COI pertaining to the authors and a minority (35%) asked for financial COI disclosure pertaining to the family members or authors' institution (29%). Over half required the disclosure of at least one form of non-financial COI (57%), out of which only two (3%) specifically referred to intellectual COI. Small minorities of journals (17% and 24% respectively) described a potential impact of disclosed COI and of non-disclosure of COI on the editorial process. While financial COI disclosure was well defined by the majority of the journals, many did not have clear policies on disclosure of non-financial COI, disclosure of financial COI of family members and institutions of the authors, and effect of disclosed COI or non-disclosure of COI on editorial policies.

A Low Cost Simulation System to Demonstrate Pilot Induced Oscillation Phenomenon

NASA Technical Reports Server (NTRS)

Ali, Syed Firasat

1997-01-01

A flight simulation system with graphics and software on Silicon Graphics computer workstations has been installed in the Flight Vehicle Design Laboratory at Tuskegee University. The system has F-15E flight simulation software from NASA Dryden which uses the graphics of SGI flight simulation demos. On the system, thus installed, a study of pilot induced oscillations is planned for future work. Preliminary research is conducted by obtaining two sets of straight level flights with pilot in the loop. In one set of flights no additional delay is used between the stick input and the appearance of airplane response on the computer monitor. In another set of flights, a 500 ms additional delay is used. The flight data is analyzed to find cross correlations between deflections of control surfaces and response of the airplane. The pilot dynamics features depicted from cross correlations of straight level flights are discussed in this report. The correlations presented here will serve as reference material for the corresponding correlations in a future study of pitch attitude tracking tasks involving pilot induced oscillations.

Impact of Oncoming Headlight Glare With Cataracts: A Pilot Study

PubMed Central

Hwang, Alex D.; Tuccar-Burak, Merve; Goldstein, Robert; Peli, Eli

2018-01-01

Purpose: Oncoming headlight glare (HLG) reduces the visibility of objects on the road and may affect the safety of nighttime driving. With cataracts, the impact of oncoming HLG is expected to be more severe. We used our custom HLG simulator in a driving simulator to measure the impact of HLG on pedestrian detection by normal vision subjects with simulated mild cataracts and by patients with real cataracts. Methods: Five normal vision subjects drove nighttime scenarios under two HLG conditions (with and without HLG: HLGY and HLGN, respectively), and three vision conditions (with plano lens, simulated mild cataract, and optically blurred clip-on). Mild cataract was simulated by applying a 0.8 Bangerter diffusion foil to clip-on plano lenses. The visual acuity with the optically blurred lenses was individually chosen to match the visual acuity with the simulated cataract clip-ons under HLGN. Each nighttime driving scenario contains 24 pedestrian encounters, encompassing four pedestrian types; walking along the left side of the road, walking along the right side of the road, crossing the road from left to right, and crossing the road from right to left. Pedestrian detection performances of five patients with mild real cataracts were measured using the same setup. The cataract patients were tested only in HLGY and HLGN conditions. Participants’ visual acuity and contrast sensitivity were also measured in the simulator with and without stationary HLG. Results: For normal vision subjects, both the presence of oncoming HLG and wearing the simulated cataract clip-on reduced pedestrian detection performance. The subjects performed worst in events where the pedestrian crossed from the left, followed by events where the pedestrian crossed from the right. Significant interactions between HLG condition and other factors were also found: (1) the impact of oncoming HLG with the simulated cataract clip-on was larger than with the plano lens clip-on, (2) the impact of oncoming HLG was larger with the optically blurred clip-on than with the plano lens clip-on, but smaller than with the simulated cataract clip-on, and (3) the impact was larger for the pedestrians that crossed from the left than those that crossed from the right, and for the pedestrians walking along the left side of the road than walking along the right side of the road, suggesting that the pedestrian proximity to the glare source contributed to the performance reduction. Under HLGN, almost no pedestrians were missed with the plano lens or the simulated cataract clip-on (0 and 0.5%, respectively), but under HLGY, the rate of pedestrian misses increased to 0.5 and 6%, respectively. With the optically blurred clip-on, the percent of missed pedestrians under HLGN and HLGY did not change much (5% and 6%, respectively). Untimely response rate increased under HLGY with the plano lens and simulated cataract clip-ons, but the increase with the simulated cataract clip-on was significantly larger than with the plano lens clip-on. The contrast sensitivity with the simulated cataract clip-on was significantly degraded under HLGY. The visual acuity with the plano lens clip-on was significantly improved under HLGY, possibly due to pupil myosis. The impact of HLG measured for real cataract patients was similar to the impact on performance of normal vision subjects with simulated cataract clip-ons. Conclusion: Even with mild (simulated or real) cataracts, a substantial negative effect of oncoming HLG was measurable in the detection of crossing and walking-along pedestrians. The lowered pedestrian detection rates and longer response times with HLGY demonstrate a possible risk that oncoming HLG poses to patients driving with cataracts. PMID:29559933

A comparison of time dependent Cox regression, pooled logistic regression and cross sectional pooling with simulations and an application to the Framingham Heart Study.

PubMed

Ngwa, Julius S; Cabral, Howard J; Cheng, Debbie M; Pencina, Michael J; Gagnon, David R; LaValley, Michael P; Cupples, L Adrienne

2016-11-03

Typical survival studies follow individuals to an event and measure explanatory variables for that event, sometimes repeatedly over the course of follow up. The Cox regression model has been used widely in the analyses of time to diagnosis or death from disease. The associations between the survival outcome and time dependent measures may be biased unless they are modeled appropriately. In this paper we explore the Time Dependent Cox Regression Model (TDCM), which quantifies the effect of repeated measures of covariates in the analysis of time to event data. This model is commonly used in biomedical research but sometimes does not explicitly adjust for the times at which time dependent explanatory variables are measured. This approach can yield different estimates of association compared to a model that adjusts for these times. In order to address the question of how different these estimates are from a statistical perspective, we compare the TDCM to Pooled Logistic Regression (PLR) and Cross Sectional Pooling (CSP), considering models that adjust and do not adjust for time in PLR and CSP. In a series of simulations we found that time adjusted CSP provided identical results to the TDCM while the PLR showed larger parameter estimates compared to the time adjusted CSP and the TDCM in scenarios with high event rates. We also observed upwardly biased estimates in the unadjusted CSP and unadjusted PLR methods. The time adjusted PLR had a positive bias in the time dependent Age effect with reduced bias when the event rate is low. The PLR methods showed a negative bias in the Sex effect, a subject level covariate, when compared to the other methods. The Cox models yielded reliable estimates for the Sex effect in all scenarios considered. We conclude that survival analyses that explicitly account in the statistical model for the times at which time dependent covariates are measured provide more reliable estimates compared to unadjusted analyses. We present results from the Framingham Heart Study in which lipid measurements and myocardial infarction data events were collected over a period of 26 years.

Wind Tunnel Measurements of Turbulent Boundary Layer over Hypothetical Urban Roughness Elements

NASA Astrophysics Data System (ADS)

Ho, Y. K.; Liu, C. H.

2012-04-01

Urban morphology affects the near-ground atmospheric boundary layer that in turn modifies the wind flows and pollutant dispersion over urban areas. A number of numerical models (large-eddy simulation, LES and k-ɛ turbulence models) have been developed to elucidate the transport processes in and above urban street canyons. To complement the modelling results, we initiated a wind tunnel study to examine the influence of idealized urban roughness on the flow characteristics and pollutant dispersion mechanism over 2D idealized street canyons placed in cross flows. Hot-wire anemometry (HWA) was employed in this study to measure the flows over 2D street canyons in the wind tunnel in our university. Particular focus in the beginning stage was on the fabrication of hot-wire probes, data acquisition system, and signal processing technique. Employing the commonly adopted hot-wire universal function, we investigated the relationship in between and developed a scaling factor which could generalize the output of our hot-wire probes to the standardized one as each hot-wire probes has its unique behaviour. Preliminary experiments were performed to measure the wind flows over street canyons of unity aspect ratio. Vertical profiles of the ensemble average velocity and fluctuations at three different segments over the street canyons were collected. The results were then compared with our LES that show a good argument with each other. Additional experiments are undertaken to collect more data in order to formulate the pollutant dispersion mechanism of street canyons and urban areas.

The Effects of Cell Phone and Text Message Conversations on Simulated Street Crossing.

PubMed

Banducci, Sarah E; Ward, Nathan; Gaspar, John G; Schab, Kurt R; Crowell, James A; Kaczmarski, Henry; Kramer, Arthur F

2016-02-01

A fully immersive, high-fidelity street-crossing simulator was used to examine the effects of texting on pedestrian street-crossing performance. Research suggests that street-crossing performance is impaired when pedestrians engage in cell phone conversations. Less is known about the impact of texting on street-crossing performance. Thirty-two young adults completed three distraction conditions in a simulated street-crossing task: no distraction, phone conversation, and texting. A hands-free headset and a mounted tablet were used to conduct the phone and texting conversations, respectively. Participants moved through the virtual environment via a manual treadmill, allowing them to select crossing gaps and change their gait. During the phone conversation and texting conditions, participants had fewer successful crossings and took longer to initiate crossing. Furthermore, in the texting condition, smaller percentage of time with head orientation toward the tablet, fewer number of head orientations toward the tablet, and greater percentage of total characters typed before initiating crossing predicted greater crossing success. Our results suggest that (a) texting is as unsafe as phone conversations for street-crossing performance and (b) when subjects completed most of the texting task before initiating crossing, they were more likely to make it safely across the street. Sending and receiving text messages negatively impact a range of real-world behaviors. These results may inform personal and policy decisions. © 2015, Human Factors and Ergonomics Society.

IB-LBM simulation of the haemocyte dynamics in a stenotic capillary.

PubMed

Yuan-Qing, Xu; Xiao-Ying, Tang; Fang-Bao, Tian; Yu-Hua, Peng; Yong, Xu; Yan-Jun, Zeng

2014-01-01

To study the behaviour of a haemocyte when crossing a stenotic capillary, the immersed boundary-lattice Boltzmann method was used to establish a quantitative analysis model. The haemocyte was assumed to be spherical and to have an elastic cell membrane, which can be driven by blood flow to adopt a highly deformable character. In the stenotic capillary, the spherical blood cell was stressed both by the flow and the wall dimension, and the cell shape was forced to be stretched to cross the stenosis. Our simulation investigated the haemocyte crossing process in detail. The velocity and pressure were anatomised to obtain information on how blood flows through a capillary and to estimate the degree of cell damage caused by excessive pressure. Quantitative velocity analysis results demonstrated that a large haemocyte crossing a small stenosis would have a noticeable effect on blood flow, while quantitative pressure distribution analysis results indicated that the crossing process would produce a special pressure distribution in the cell interior and to some extent a sudden change between the cell interior and the surrounding plasma.

Cross-correlation between EMG and center of gravity during quiet stance: theory and simulations.

PubMed

Kohn, André Fabio

2005-11-01

Several signal processing tools have been employed in the experimental study of the postural control system in humans. Among them, the cross-correlation function has been used to analyze the time relationship between signals such as the electromyogram and the horizontal projection of the center of gravity. The common finding is that the electromyogram precedes the biomechanical signal, a result that has been interpreted in different ways, for example, the existence of feedforward control or the preponderance of a velocity feedback. It is shown here, analytically and by simulation, that the cross-correlation function is dependent in a complicated way on system parameters and on noise spectra. Results similar to those found experimentally, e.g., electromyogram preceding the biomechanical signal may be obtained in a postural control model without any feedforward control and without any velocity feedback. Therefore, correct interpretations of experimentally obtained cross-correlation functions may require additional information about the system. The results extend to other biomedical applications where two signals from a closed loop system are cross-correlated.

Collision cross sections and transport coefficients of O-, O2 -, O3 - and O4 - negative ions in O2, N2 and dry air for non-thermal plasmas modelling

NASA Astrophysics Data System (ADS)

Hennad, Ali; Yousfi, Mohammed

2018-02-01

The ions interaction data such as interaction potential parameters, elastic and inelastic collision cross sections and the transport coefficients (reduced mobility and diffusion coefficients) have been determined and analyzed in the case of the main negative oxygen ions (O-, O2 -, O3 - and O4 -) present in low temperature plasma at atmospheric pressure when colliding O2, N2 and dry air. The ion transport has been determined from an optimized Monte Carlo simulation using calculated elastic and experimentally fitted inelastic collision cross sections. The elastic momentum transfer collision cross sections have been calculated from a semi-classical JWKB approximation based on a ( n-4) rigid core interaction potential model. The cross sections sets involving elastic and inelastic processes were then validated using measured reduced mobility data and also diffusion coefficient whenever available in the literature. From the sets of elastic and inelastic collision cross sections thus obtained for the first time for O3-/O2, O2 -/N2, O3 -/N2, and O4 -/N2 systems, the ion transport coefficients were calculated in pure gases and dry air over a wide range of the density reduced electric field E/N.

Fast Realistic MRI Simulations Based on Generalized Multi-Pool Exchange Tissue Model.

PubMed

Liu, Fang; Velikina, Julia V; Block, Walter F; Kijowski, Richard; Samsonov, Alexey A

2017-02-01

We present MRiLab, a new comprehensive simulator for large-scale realistic MRI simulations on a regular PC equipped with a modern graphical processing unit (GPU). MRiLab combines realistic tissue modeling with numerical virtualization of an MRI system and scanning experiment to enable assessment of a broad range of MRI approaches including advanced quantitative MRI methods inferring microstructure on a sub-voxel level. A flexible representation of tissue microstructure is achieved in MRiLab by employing the generalized tissue model with multiple exchanging water and macromolecular proton pools rather than a system of independent proton isochromats typically used in previous simulators. The computational power needed for simulation of the biologically relevant tissue models in large 3D objects is gained using parallelized execution on GPU. Three simulated and one actual MRI experiments were performed to demonstrate the ability of the new simulator to accommodate a wide variety of voxel composition scenarios and demonstrate detrimental effects of simplified treatment of tissue micro-organization adapted in previous simulators. GPU execution allowed  ∼ 200× improvement in computational speed over standard CPU. As a cross-platform, open-source, extensible environment for customizing virtual MRI experiments, MRiLab streamlines the development of new MRI methods, especially those aiming to infer quantitatively tissue composition and microstructure.

Fast Realistic MRI Simulations Based on Generalized Multi-Pool Exchange Tissue Model

PubMed Central

Velikina, Julia V.; Block, Walter F.; Kijowski, Richard; Samsonov, Alexey A.

2017-01-01

We present MRiLab, a new comprehensive simulator for large-scale realistic MRI simulations on a regular PC equipped with a modern graphical processing unit (GPU). MRiLab combines realistic tissue modeling with numerical virtualization of an MRI system and scanning experiment to enable assessment of a broad range of MRI approaches including advanced quantitative MRI methods inferring microstructure on a sub-voxel level. A flexibl representation of tissue microstructure is achieved in MRiLab by employing the generalized tissue model with multiple exchanging water and macromolecular proton pools rather than a system of independent proton isochromats typically used in previous simulators. The computational power needed for simulation of the biologically relevant tissue models in large 3D objects is gained using parallelized execution on GPU. Three simulated and one actual MRI experiments were performed to demonstrate the ability of the new simulator to accommodate a wide variety of voxel composition scenarios and demonstrate detrimental effects of simplifie treatment of tissue micro-organization adapted in previous simulators. GPU execution allowed ∼200× improvement in computational speed over standard CPU. As a cross-platform, open-source, extensible environment for customizing virtual MRI experiments, MRiLab streamlines the development of new MRI methods, especially those aiming to infer quantitatively tissue composition and microstructure. PMID:28113746

The use of dwell time cross-correlation functions to study single-ion channel gating kinetics.

PubMed Central

Ball, F G; Kerry, C J; Ramsey, R L; Sansom, M S; Usherwood, P N

1988-01-01

The derivation of cross-correlation functions from single-channel dwell (open and closed) times is described. Simulation of single-channel data for simple gating models, alongside theoretical treatment, is used to demonstrate the relationship of cross-correlation functions to underlying gating mechanisms. It is shown that time irreversibility of gating kinetics may be revealed in cross-correlation functions. Application of cross-correlation function analysis to data derived from the locust muscle glutamate receptor-channel provides evidence for multiple gateway states and time reversibility of gating. A model for the gating of this channel is used to show the effect of omission of brief channel events on cross-correlation functions. PMID:2462924

Influence of the helium-pressure on diode-pumped alkali-vapor laser

NASA Astrophysics Data System (ADS)

Gao, Fei; Chen, Fei; Xie, Ji-jiang; Zhang, Lai-ming; Li, Dian-jun; Yang, Gui-long; Guo, Jing

2013-05-01

Diode-pumped alkali-vapor laser (DPAL) is a kind of laser attracted much attention for its merits, such as high quantum efficiency, excellent beam quality, favorable thermal management, and potential scalability to high power and so on. Based on the rate-equation theory of end-pumped DPAL, the performances of DPAL using Cs-vapor collisionally broadened by helium are simulated and studied. With the increase of helium pressure, the numerical results show that: 1) the absorption line-width increases and the stimulated absorption cross-section decreases contrarily; 2) the threshold pumping power decreases to minimum and then rolls over to increase linearly; 3) the absorption efficiency rises to maximum initially due to enough large stimulated absorption cross-section in the far wings of collisionally broadened D2 transition (absorption transition), and then begins to reduce; 4) an optimal value of helium pressure exists to obtain the highest output power, leading to an optimal optical-optical efficiency. Furthermore, to generate the self-oscillation of laser, a critical value of helium pressure occurs when small-signal gain equals to the threshold gain.

Wind-Induced Reconfigurations in Flexible Branched Trees

NASA Astrophysics Data System (ADS)

Ojo, Oluwafemi; Shoele, Kourosh

2017-11-01

Wind induced stresses are the major mechanical cause of failure in trees. We know that the branching mechanism has an important effect on the stress distribution and stability of a tree in the wind. Eloy in PRL 2011, showed that Leonardo da Vinci's original observation which states the total cross section of branches is conserved across branching nodes is the best configuration for resisting wind-induced fracture in rigid trees. However, prediction of the fracture risk and pattern of a tree is also a function of their reconfiguration capabilities and how they mitigate large wind-induced stresses. In this studies through developing an efficient numerical simulation of flexible branched trees, we explore the role of the tree flexibility on the optimal branching. Our results show that the probability of a tree breaking at any point depends on both the cross-section changes in the branching nodes and the level of tree flexibility. It is found that the branching mechanism based on Leonardo da Vinci's original observation leads to a uniform stress distribution over a wide range of flexibilities but the pattern changes for more flexible systems.

MAGNETIC NULL POINTS IN KINETIC SIMULATIONS OF SPACE PLASMAS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Olshevsky, Vyacheslav; Innocenti, Maria Elena; Cazzola, Emanuele

2016-03-01

We present a systematic attempt to study magnetic null points and the associated magnetic energy conversion in kinetic particle-in-cell simulations of various plasma configurations. We address three-dimensional simulations performed with the semi-implicit kinetic electromagnetic code iPic3D in different setups: variations of a Harris current sheet, dipolar and quadrupolar magnetospheres interacting with the solar wind, and a relaxing turbulent configuration with multiple null points. Spiral nulls are more likely created in space plasmas: in all our simulations except lunar magnetic anomaly (LMA) and quadrupolar mini-magnetosphere the number of spiral nulls prevails over the number of radial nulls by a factor of 3–9.more » We show that often magnetic nulls do not indicate the regions of intensive energy dissipation. Energy dissipation events caused by topological bifurcations at radial nulls are rather rare and short-lived. The so-called X-lines formed by the radial nulls in the Harris current sheet and LMA simulations are rather stable and do not exhibit any energy dissipation. Energy dissipation is more powerful in the vicinity of spiral nulls enclosed by magnetic flux ropes with strong currents at their axes (their cross sections resemble 2D magnetic islands). These null lines reminiscent of Z-pinches efficiently dissipate magnetic energy due to secondary instabilities such as the two-stream or kinking instability, accompanied by changes in magnetic topology. Current enhancements accompanied by spiral nulls may signal magnetic energy conversion sites in the observational data.« less

How older people in the United States and Germany fared in the growth years of the 1980s: a cross-sectional versus a longitudinal view.

PubMed

Burkhauser, R V; Cutts, A C; Lillard, D R

1999-09-01

The goal of the study was to show that cross-sectional and longitudinal data yield dramatically different answers to a basic question: "How did older persons fare in the recovery years of the 1980s?" The United States Panel Study of Income Dynamics and the German Socio-Economic Panel are used cross-sectionally to capture changes in the economic well-being of older persons in the trough and peak years of the 1980s business cycle, and longitudinally to trace how the economic well-being of a given cohort of older persons changed over those years. Kernel density estimation is then used to show how the distribution of economic well-being of these populations changed over these years. Cross-sectional comparisons confirm that persons aged 65 and over in the peak year were better off than persons aged 65 and over in the trough year in both countries. Longitudinal comparisons, however, show that persons aged 65 and over in the trough year who survived to the peak year received a substantially smaller share of the rewards of economic recovery than cross-sectional comparisons imply. Moreover, the entire income distribution of older persons in the United States shifted downwards. Compositional changes in the cross-sectional data, caused by the entry of high-income persons who are young in the peak year but old in the trough year, obscure the decline in the economic well-being of the cohort of older persons who survived the trough year, in cross-sectional comparisons of older populations in the United States in the 1980s.

Initial development of goCMC: a GPU-oriented fast cross-platform Monte Carlo engine for carbon ion therapy

PubMed Central

Qin, Nan; Pinto, Marco; Tian, Zhen; Dedes, Georgios; Pompos, Arnold; Jiang, Steve B.; Parodi, Katia; Jia, Xun

2017-01-01

Monte Carlo (MC) simulation is considered as the most accurate method for calculation of absorbed dose and fundamental physics quantities related to biological effects in carbon ion therapy. To improve its computational efficiency, we have developed a GPU-oriented fast MC package named goCMC, for carbon therapy. goCMC simulates particle transport in voxelized geometry with kinetic energy up to 450 MeV/u. Class II condensed history simulation scheme with a continuous slowing down approximation was employed. Energy straggling and multiple scattering were modeled. δ-electrons were terminated with their energy locally deposited. Four types of nuclear interactions were implemented in goCMC, i.e., carbon-hydrogen, carbon-carbon, carbon-oxygen and carbon-calcium inelastic collisions. Total cross section data from Geant4 were used. Secondary particles produced in these interactions were sampled according to particle yield with energy and directional distribution data derived from Geant4 simulation results. Secondary charged particles were transported following the condensed history scheme, whereas secondary neutral particles were ignored. goCMC was developed under OpenCL framework and is executable on different platforms, e.g. GPU and multi-core CPU. We have validated goCMC with Geant4 in cases with different beam energy and phantoms including four homogeneous phantoms, one heterogeneous half-slab phantom, and one patient case. For each case 3 × 107 carbon ions were simulated, such that in the region with dose greater than 10% of maximum dose, the mean relative statistical uncertainty was less than 1%. Good agreements for dose distributions and range estimations between goCMC and Geant4 were observed. 3D gamma passing rates with 1%/1 mm criterion were over 90% within 10%) isodose line except in two extreme cases, and those with 2%/1 mm criterion were all over 96%. Efficiency and code portability were tested with different GPUs and CPUs. Depending on the beam energy and voxel size, the computation time to simulate 107 carbons was 9.9–125 sec, 2.5–50 sec and 60–612 sec on an AMD Radeon GPU card, an NVidia GeForce GTX 1080 GPU card and an Intel Xeon E5-2640 CPU, respectively. The combined accuracy, efficiency and portability make goCMC attractive for research and clinical applications in carbon ion therapy. PMID:28140352

Initial development of goCMC: a GPU-oriented fast cross-platform Monte Carlo engine for carbon ion therapy

NASA Astrophysics Data System (ADS)

Qin, Nan; Pinto, Marco; Tian, Zhen; Dedes, Georgios; Pompos, Arnold; Jiang, Steve B.; Parodi, Katia; Jia, Xun

2017-05-01

Monte Carlo (MC) simulation is considered as the most accurate method for calculation of absorbed dose and fundamental physics quantities related to biological effects in carbon ion therapy. To improve its computational efficiency, we have developed a GPU-oriented fast MC package named goCMC, for carbon therapy. goCMC simulates particle transport in voxelized geometry with kinetic energy up to 450 MeV u-1. Class II condensed history simulation scheme with a continuous slowing down approximation was employed. Energy straggling and multiple scattering were modeled. δ-electrons were terminated with their energy locally deposited. Four types of nuclear interactions were implemented in goCMC, i.e. carbon-hydrogen, carbon-carbon, carbon-oxygen and carbon-calcium inelastic collisions. Total cross section data from Geant4 were used. Secondary particles produced in these interactions were sampled according to particle yield with energy and directional distribution data derived from Geant4 simulation results. Secondary charged particles were transported following the condensed history scheme, whereas secondary neutral particles were ignored. goCMC was developed under OpenCL framework and is executable on different platforms, e.g. GPU and multi-core CPU. We have validated goCMC with Geant4 in cases with different beam energy and phantoms including four homogeneous phantoms, one heterogeneous half-slab phantom, and one patient case. For each case 3× {{10}7} carbon ions were simulated, such that in the region with dose greater than 10% of maximum dose, the mean relative statistical uncertainty was less than 1%. Good agreements for dose distributions and range estimations between goCMC and Geant4 were observed. 3D gamma passing rates with 1%/1 mm criterion were over 90% within 10% isodose line except in two extreme cases, and those with 2%/1 mm criterion were all over 96%. Efficiency and code portability were tested with different GPUs and CPUs. Depending on the beam energy and voxel size, the computation time to simulate {{10}7} carbons was 9.9-125 s, 2.5-50 s and 60-612 s on an AMD Radeon GPU card, an NVidia GeForce GTX 1080 GPU card and an Intel Xeon E5-2640 CPU, respectively. The combined accuracy, efficiency and portability make goCMC attractive for research and clinical applications in carbon ion therapy.

Initial development of goCMC: a GPU-oriented fast cross-platform Monte Carlo engine for carbon ion therapy.

PubMed

Qin, Nan; Pinto, Marco; Tian, Zhen; Dedes, Georgios; Pompos, Arnold; Jiang, Steve B; Parodi, Katia; Jia, Xun

2017-05-07

Monte Carlo (MC) simulation is considered as the most accurate method for calculation of absorbed dose and fundamental physics quantities related to biological effects in carbon ion therapy. To improve its computational efficiency, we have developed a GPU-oriented fast MC package named goCMC, for carbon therapy. goCMC simulates particle transport in voxelized geometry with kinetic energy up to 450 MeV u -1 . Class II condensed history simulation scheme with a continuous slowing down approximation was employed. Energy straggling and multiple scattering were modeled. δ-electrons were terminated with their energy locally deposited. Four types of nuclear interactions were implemented in goCMC, i.e. carbon-hydrogen, carbon-carbon, carbon-oxygen and carbon-calcium inelastic collisions. Total cross section data from Geant4 were used. Secondary particles produced in these interactions were sampled according to particle yield with energy and directional distribution data derived from Geant4 simulation results. Secondary charged particles were transported following the condensed history scheme, whereas secondary neutral particles were ignored. goCMC was developed under OpenCL framework and is executable on different platforms, e.g. GPU and multi-core CPU. We have validated goCMC with Geant4 in cases with different beam energy and phantoms including four homogeneous phantoms, one heterogeneous half-slab phantom, and one patient case. For each case [Formula: see text] carbon ions were simulated, such that in the region with dose greater than 10% of maximum dose, the mean relative statistical uncertainty was less than 1%. Good agreements for dose distributions and range estimations between goCMC and Geant4 were observed. 3D gamma passing rates with 1%/1 mm criterion were over 90% within 10% isodose line except in two extreme cases, and those with 2%/1 mm criterion were all over 96%. Efficiency and code portability were tested with different GPUs and CPUs. Depending on the beam energy and voxel size, the computation time to simulate [Formula: see text] carbons was 9.9-125 s, 2.5-50 s and 60-612 s on an AMD Radeon GPU card, an NVidia GeForce GTX 1080 GPU card and an Intel Xeon E5-2640 CPU, respectively. The combined accuracy, efficiency and portability make goCMC attractive for research and clinical applications in carbon ion therapy.

On the Single-Layer Hydraulics Model for Flows and Ventilation over Unban Areas in Stable Stratification

NASA Astrophysics Data System (ADS)

Liu, C. H.

2015-12-01

Atmospheric stability has substantial effects on the flows and heat/mass transport processes. While extensive studies have been conducted for neutral and unstable stabilities, rather limited studies have been devoted to stable stratification. Major technical reason is the demanding spatio-temporal resolution required to solve the small scales in stratified turbulent flows. Instead of continuous density variation, we use the single-layer hydraulics model (analogous to shallow water equations for global dynamics), to simulate the stratified flows and turbulence structure over hypothetical urban areas. An array of identical ribs in cross flows is used to model an idealized urban surface and the aerodynamic resistance is controlled by the separation among the ribs. Two immiscible fluids (water and air) with a large density difference (three order of magnitude) are used to simulate the stratification. The key assumption is that the density in the (lower) single layer is uniform. As a result, the stratification is measured by the Froude number Fr (= U/(gH)1/2; where U is the flow speed, g the gravitational acceleration and H the single-layer depth). One of the characteristics of single-layer hydraulics model is hydraulic jump which occurs when the flows are slowing down from Fr > 1 (high-speed flows over smoother surfaces) to Fr < 1 (lower-speed flows over rougher surfaces). It is noteworthy that kinetic energy does not conserve across hydraulic jump that, unavoidably, cascades to turbulent kinetic energy (TKE). We thus hypotheses that the elevated TKE could modify the street-level ventilation mechanism in the stratified flows across an abrupt change in surface roughness entering urban areas. Large-eddy simulation and laboratory-scale water channel experiments are sought to improve our understanding of the occurrence of hydraulic jump and the associated street-level ventilation mechanism in the stratified flows over urban areas. Preliminary results, by comparing the dynamics at Fr = 2.4 and Fr = 2.8, demonstrate the notable changes in ventilation performance in the first several rows of ribs of urban areas. Substantial changes in the mean and fluctuating velocities are observed that contribute to the different street-level ventilation mechanism. Detailed results will be reported in the upcoming AGU fall meeting.

Effective Elastic and Neutron Capture Cross Section Calculations Corresponding to Simulated Fluid Properties from CO2 Push-Pull Simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chugunov, Nikita; Altundas, Bilgin

The submission contains a .xls files consisting of 10 excel sheets, which contain combined list of pressure, saturation, salinity, temperature profiles from the simulation of CO2 push-pull using Brady reservoir model and the corresponding effective compressional and shear velocity, bulk density, and fluid and time-lapse neutron capture cross section profiles of rock at times 0 day (baseline) through 14 days. First 9 sheets (each named after the corresponding CO2 push-pull simulation time) contains simulated pressure, saturation, temperature, salinity profiles and the corresponding effective elastic and neutron capture cross section profiles of rock matrix at the time of CO2 injection. Eachmore » sheet contains two sets of effective compressional velocity profiles of the rock, one based on Gassmann and the other based on Patchy saturation model. Effective neutron capture cross section calculations are done using a proprietary neutron cross-section simulator (SNUPAR) whereas for the thermodynamic properties of CO2 and bulk density of rock matrix filled with fluid, a standalone fluid substitution tool by Schlumberger is used. Last sheet in the file contains the bulk modulus of solid rock, which is inverted from the rock properties (porosity, sound speed etc) based on Gassmann model. Bulk modulus of solid rock in turn is used in the fluid substitution.« less

Multisite stochastic simulation of daily precipitation from copula modeling with a gamma marginal distribution

NASA Astrophysics Data System (ADS)

Lee, Taesam

2018-05-01

Multisite stochastic simulations of daily precipitation have been widely employed in hydrologic analyses for climate change assessment and agricultural model inputs. Recently, a copula model with a gamma marginal distribution has become one of the common approaches for simulating precipitation at multiple sites. Here, we tested the correlation structure of the copula modeling. The results indicate that there is a significant underestimation of the correlation in the simulated data compared to the observed data. Therefore, we proposed an indirect method for estimating the cross-correlations when simulating precipitation at multiple stations. We used the full relationship between the correlation of the observed data and the normally transformed data. Although this indirect method offers certain improvements in preserving the cross-correlations between sites in the original domain, the method was not reliable in application. Therefore, we further improved a simulation-based method (SBM) that was developed to model the multisite precipitation occurrence. The SBM preserved well the cross-correlations of the original domain. The SBM method provides around 0.2 better cross-correlation than the direct method and around 0.1 degree better than the indirect method. The three models were applied to the stations in the Nakdong River basin, and the SBM was the best alternative for reproducing the historical cross-correlation. The direct method significantly underestimates the correlations among the observed data, and the indirect method appeared to be unreliable.

Measurement of νμ charged-current single π0 production on hydrocarbon in the few-GeV region using MINERvA

NASA Astrophysics Data System (ADS)

Altinok, O.; Le, T.; Aliaga, L.; Bellantoni, L.; Bercellie, A.; Betancourt, M.; Bodek, A.; Bravar, A.; Budd, H.; Caceres Vera, G. F. R.; Cai, T.; Carneiro, M. F.; da Motta, H.; Dytman, S. A.; Díaz, G. A.; Felix, J.; Fields, L.; Fine, R.; Gago, A. M.; Galindo, R.; Gallagher, H.; Ghosh, A.; Gran, R.; Han, J. Y.; Harris, D. A.; Kleykamp, J.; Kordosky, M.; Maher, E.; Manly, S.; Mann, W. A.; Marshall, C. M.; Martinez Caicedo, D. A.; McFarland, K. S.; McGowan, A. M.; Messerly, B.; Miller, J.; Mislivec, A.; Morfín, J. G.; Naples, D.; Nelson, J. K.; Norrick, A.; Nuruzzaman, Paolone, V.; Patrick, C. E.; Perdue, G. N.; Ramirez, M. A.; Ransome, R. D.; Ray, H.; Ren, L.; Rimal, D.; Rodrigues, P. A.; Ruterbories, D.; Schellman, H.; Sobczyk, J. T.; Solano Salinas, C. J.; Sultana, M.; Sánchez Falero, S.; Valencia, E.; Wolcott, J.; Yaeggy, B.

2017-10-01

The semiexclusive channel νμ+CH →μ-π0+nucleon(s ) is analyzed using MINERvA exposed to the low-energy NuMI νμ beam with spectral peak at Eν≃3 GeV . Differential cross sections for muon momentum and production angle, π0 kinetic energy and production angle, and for squared four-momentum transfer are reported, and the cross section σ (Eν) is obtained over the range 1.5 GeV ≤Eν<20 GeV . Results are compared to GENIE and NuWro predictions and to published MINERvA cross sections for charged-current π+(π0) production by νμ(ν¯μ) neutrinos. Disagreements between data and simulation are observed at very low and relatively high values for muon angle and for Q2 that may reflect shortfalls in modeling of interactions on carbon. For π0 kinematic distributions, however, the data are consistent with the simulation and provide support for generator treatments of pion intranuclear scattering. Using signal-event subsamples that have reconstructed protons as well as π0 mesons, the p π0 invariant mass distribution is obtained, and the decay polar and azimuthal angle distributions in the rest frame of the p π0 system are measured in the region of Δ (1232 )+ production, W <1.4 GeV .

Measurement of ν μ charged-current single π 0 production on hydrocarbon in the few-GeV region using MINERvA

DOE PAGES

Altinok, O.; Le, T.; Aliaga, L.; ...

2017-10-01

The semiexclusive channel νμ+CH→μ-π0+nucleon(s) is analyzed using MINERvA exposed to the low-energy NuMI νμ beam with spectral peak at Eν≃3 GeV. Differential cross sections for muon momentum and production angle, π0 kinetic energy and production angle, and for squared four-momentum transfer are reported, and the cross section σ(Eν) is obtained over the range 1.5 GeV≤Eν<20 GeV. Results are compared to GENIE and NuWro predictions and to published MINERvA cross sections for charged-current π+(π0) production by νμ(ν¯μ) neutrinos. Disagreements between data and simulation are observed at very low and relatively high values for muon angle and for Q2 that may reflectmore » shortfalls in modeling of interactions on carbon. For π0 kinematic distributions, however, the data are consistent with the simulation and provide support for generator treatments of pion intranuclear scattering. Using signal-event subsamples that have reconstructed protons as well as π0 mesons, the pπ0 invariant mass distribution is obtained, and the decay polar and azimuthal angle distributions in the rest frame of the pπ0 system are measured in the region of Δ(1232)+ production, W<1.4 GeV.« less

Measurement of ν μ charged-current single π 0 production on hydrocarbon in the few-GeV region using MINERvA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Altinok, O.; Le, T.; Aliaga, L.

The semiexclusive channel νμ+CH→μ-π0+nucleon(s) is analyzed using MINERvA exposed to the low-energy NuMI νμ beam with spectral peak at Eν≃3 GeV. Differential cross sections for muon momentum and production angle, π0 kinetic energy and production angle, and for squared four-momentum transfer are reported, and the cross section σ(Eν) is obtained over the range 1.5 GeV≤Eν<20 GeV. Results are compared to GENIE and NuWro predictions and to published MINERvA cross sections for charged-current π+(π0) production by νμ(ν¯μ) neutrinos. Disagreements between data and simulation are observed at very low and relatively high values for muon angle and for Q2 that may reflectmore » shortfalls in modeling of interactions on carbon. For π0 kinematic distributions, however, the data are consistent with the simulation and provide support for generator treatments of pion intranuclear scattering. Using signal-event subsamples that have reconstructed protons as well as π0 mesons, the pπ0 invariant mass distribution is obtained, and the decay polar and azimuthal angle distributions in the rest frame of the pπ0 system are measured in the region of Δ(1232)+ production, W<1.4 GeV.« less

Inner Surf/Swash Zone Morphodynamic Numerical Model Simulation of an Accreting Ridge during Low-Energy Wave Conditions

NASA Astrophysics Data System (ADS)

Song, Youn Kyung; Figlus, Jens; Chardón-Maldonado, Patricia; Puleo, Jack A.

2017-04-01

The inner surf/swash zone of a coastal beach is characterized as an intermittently wet and dry zone in the nearshore that often develops a variety of morphological features including intertidal bars and ridge-runnel (RR) systems. The cross-shore morphodynamic numerical model CSHORE is used to simulate the beach recovery observed during a field experiment carried out at South Bethany Beach, Delaware, a nourished, high-gradient meso-tidal sandy beach along the U. S. Coast. The field campaign was conducted from February 12 to February 25, 2014 to measure bed profile morphology change and sediment characteristics along with detailed hydrodynamic forcing parameters at six cross-shore stations, closely spaced over approximately 50 m in the inner surf and swash zone. On February 13, 2014 a Nor'easter eroded significant portions of the beach leading to formation of a pronounced RR system on the beach face that subsequently accreted in the recovery process after the storm. Bed profile changes, surf and swash velocity profiles, water free surface elevation and suspended sediment concentrations recorded during the recovery at the cross-shore measuring locations on the seaward face of the accreting ridge are compared with CSHORE simulation results. During post-storm recovery, CSHORE demonstrates shoreward migration of the ridge and slight accretion on the beach face by the end of the simulation period on February 25, 2014. This trend was also observed in the field, where accretion at the ridge crest was up to 1.0 m with respect to the post-storm profile. The CSHORE parameters critical to improving model performance in reproducing measured morphodynamics and hydrodynamics during the ridge accretion process are examined and calibrated. Initial results show promise in using this type of efficient, process-based model to reproduce morphological evolution and depth-averaged hydrodynamics as a result of the complex surf and swash zone dynamics associated with beach accretion and RR system mobilization.

First Observation of Cross-Beam Energy Transfer Mitigation for Direct-Drive Inertial Confinement Fusion Implosions Using Wavelength Detuning at the National Ignition Facility

DOE PAGES

Marozas, J. A.; Hohenberger, M.; Rosenberg, M. J.; ...

2018-02-22

Cross-beam energy transfer (CBET) results from two-beam energy exchange via seeded stimulated Brillouin scattering, which detrimentally reduces ablation pressure and implosion velocity in direct-drive inertial confinement fusion. Direct-drive implosions at the National Ignition Facility were conducted to reduce CBET by detuning the laser-source wavelengths (±2.3 Å UV) of the interacting beams over the equatorial region of the target. For the first time, wavelength detuning was shown to increase the equatorial region velocity experimentally by 16% and to alter the in-flight shell morphology. These experimental observations are consistent with design predictions of radiation–hydrodynamic simulations that indicate a 10% increase in themore » average ablation pressure.« less

First Observation of Cross-Beam Energy Transfer Mitigation for Direct-Drive Inertial Confinement Fusion Implosions Using Wavelength Detuning at the National Ignition Facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marozas, J. A.; Hohenberger, M.; Rosenberg, M. J.

Cross-beam energy transfer (CBET) results from two-beam energy exchange via seeded stimulated Brillouin scattering, which detrimentally reduces ablation pressure and implosion velocity in direct-drive inertial confinement fusion. Direct-drive implosions at the National Ignition Facility were conducted to reduce CBET by detuning the laser-source wavelengths (±2.3 Å UV) of the interacting beams over the equatorial region of the target. For the first time, wavelength detuning was shown to increase the equatorial region velocity experimentally by 16% and to alter the in-flight shell morphology. These experimental observations are consistent with design predictions of radiation–hydrodynamic simulations that indicate a 10% increase in themore » average ablation pressure.« less

Microbial mutagenic effects of the DNA minor groove binder pibenzimol (Hoechst 33258) and a series of mustard analogues.

PubMed

Ferguson, L R; Denny, W A

1995-06-01

A series of aniline mustards and half-mustards targeted to DNA by linkage (through a polymethylene chain) to the bisbenzimidazole chromophore of pibenzimol (Hoechst 33258) have been evaluated for their mutagenic properties, as estimated in three strains of Salmonella typhimurium, and for their mitotic crossing-over and petite mutagenesis activities in Saccharomyces cerevisiae strain D5. Agarose gel electrophoresis studies showed that only the derivative with the longest linker chain cross-linked DNA, with the remaining compounds being monoalkylators. The parent (non-alkylator) minor groove binding ligand (Hoechst 33258) was inactive in the bacterial strains TA98 or TA100 but weakly mutagenic in TA102, and caused neither mitotic crossing-over nor 'petite' mutagenesis in yeast. Aniline half-mustard itself (monoalkylator) was an effective base-pair substitution mutagen (events in S. typhimurium strain TA100) with some frameshift mutagenesis activity in TA98, but showed only weak effects in the yeast assays, whereas aniline mustard (cross-linker) was inactive in these bacterial systems but caused substantial amounts of mitotic crossing-over in yeast. The composite molecules studied here showed effects more characteristic of the minor groove binding chromophore than of alkylating moieties. All showed weak mutagenic activity in TA102 and none in TA98. The only compound to show significant mitotic crossing-over ability was the long-chain derivative which cross-linked DNA. For most of the compounds, the mutagenicity data provided no supportive evidence for DNA alkylation. Since other evidence suggests this does occur readily, it is likely to have a different target to that seen with untargeted aniline mustards. The significant antitumor activity and low mutagenic potential shown by these compounds make them worthy of further study.

Enhanced Conformational Sampling of N-Glycans in Solution with Replica State Exchange Metadynamics.

PubMed

Galvelis, Raimondas; Re, Suyong; Sugita, Yuji

2017-05-09

Molecular dynamics (MD) simulation of a N-glycan in solution is challenging because of high-energy barriers of the glycosidic linkages, functional group rotational barriers, and numerous intra- and intermolecular hydrogen bonds. In this study, we apply different enhanced conformational sampling approaches, namely, metadynamics (MTD), the replica-exchange MD (REMD), and the recently proposed replica state exchange MTD (RSE-MTD), to a N-glycan in solution and compare the conformational sampling efficiencies of the approaches. MTD helps to cross the high-energy barrier along the ω angle by utilizing a bias potential, but it cannot enhance sampling of the other degrees of freedom. REMD ensures moderate-energy barrier crossings by exchanging temperatures between replicas, while it hardly crosses the barriers along ω. In contrast, RSE-MTD succeeds to cross the high-energy barrier along ω as well as to enhance sampling of the other degrees of freedom. We tested two RSE-MTD schemes: in one scheme, 64 replicas were simulated with the bias potential along ω at different temperatures, while simulations of four replicas were performed with the bias potentials for different CVs at 300 K. In both schemes, one unbiased replica at 300 K was included to compute conformational properties of the glycan. The conformational sampling of the former is better than the other enhanced sampling methods, while the latter shows reasonable performance without spending large computational resources. The latter scheme is likely to be useful when a N-glycan-attached protein is simulated.

Rheological investigation of high-acyl gellan gum hydrogel and its mixtures with simulated body fluids.

PubMed

Osmałek, Tomasz Zbigniew; Froelich, Anna; Jadach, Barbara; Krakowski, Marek

2018-05-01

Purpose Most of the studies concerning gellan have been focused on its application as a food ingredient, however, gellan is often considered as a candidate for the development of novel pharmaceutical formulations. Taking into account that gellan is ion-sensitive, it can be assumed that its initial mechanical properties can change upon contact with body secretions. Therefore, the aim of the work was to investigate the rheological properties of pure high-acyl gellan gum hydrogel (0.4%) and its mixtures with selected simulated body fluids. Methods The rheological investigations were performed on rotational rheometer and included oscillatory temperature, amplitude, and frequency sweeping. The results enabled estimation of the linear viscoelastic regime, calculation of the cross-over points, and percentage of structure recovery. Results In the case of pure hydrogel no evidence of thermosensitivity was observed in the range of 20-40°C. In pH = 1.2 (NaCl/HCl) the hydrogel structure was almost entirely destroyed. Mixing with phosphate buffer (pH = 4.5) resulted in higher gel strength than after dilution with deionized water. The opposite effect was observed in the case of pH = 7.4. The studies performed for the mixture of GG hydrogel and mucin indicated interaction between the components. The hydrogel elasticity increased in the presence of simulated tear, but decreased in simulated saliva and vaginal fluid. Conclusions In this study, it was shown that the stability of a three-dimensional gellan structure may be affected by pH and the presence of mucin which most probably competed with gellan gum in divalent cations binding. The observations presented in this study may be important in terms of potential application of gellan gum as a potential carrier in drug delivery systems.

Atmospheric Oxidation of Squalene: Molecular Study Using COBRA Modeling and High-Resolution Mass Spectrometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fooshee, David R.; Aiona, Paige K.; Laskin, Alexander

2015-10-22

Squalene is a major component of skin and plant surface lipids, and is known to be present at high concentrations in indoor dust. Its high reactivity toward ozone makes it an important ozone sink and a natural protectant against atmospheric oxidizing agents. While the volatile products of squalene ozonolysis are known, the condensed-phase products have not been characterized. We present an analysis of condensed-phase products resulting from an extensive oxidation of squalene by ozone probed by electrospray ionization (ESI) high-resolution mass spectrometry (HR-MS). A complex distribution of nearly 1,300 peaks assignable to molecular formulas is observed in direct infusion positivemore » ion mode ESI mass spectra. The distribution of peaks in the mass spectra suggests that there are extensive cross-coupling reactions between hydroxy-carbonyl products of squalene ozonolysis. To get additional insights into the mechanism, we apply a Computational Brewing Application (COBRA) to simulate the oxidation of squalene in the presence of ozone, and compare predicted results with those observed by the HR-MS experiments. The system predicts over one billion molecular structures between 0-1450 Da, which correspond to about 27,000 distinct elemental formulas. Over 83% of the squalene oxidation products inferred from the mass spectrometry data are matched by the simulation. Simulation indicates a prevalence of peroxy groups, with hydroxyl and ether groups being the second-most important O-containing functional groups formed during squalene oxidation. These highly oxidized products of squalene ozonolysis may accumulate on indoor dust and surfaces, and contribute to their redox capacity.« less

Simulation of realistic abnormal SPECT brain perfusion images: application in semi-quantitative analysis

NASA Astrophysics Data System (ADS)

Ward, T.; Fleming, J. S.; Hoffmann, S. M. A.; Kemp, P. M.

2005-11-01

Simulation is useful in the validation of functional image analysis methods, particularly when considering the number of analysis techniques currently available lacking thorough validation. Problems exist with current simulation methods due to long run times or unrealistic results making it problematic to generate complete datasets. A method is presented for simulating known abnormalities within normal brain SPECT images using a measured point spread function (PSF), and incorporating a stereotactic atlas of the brain for anatomical positioning. This allows for the simulation of realistic images through the use of prior information regarding disease progression. SPECT images of cerebral perfusion have been generated consisting of a control database and a group of simulated abnormal subjects that are to be used in a UK audit of analysis methods. The abnormality is defined in the stereotactic space, then transformed to the individual subject space, convolved with a measured PSF and removed from the normal subject image. The dataset was analysed using SPM99 (Wellcome Department of Imaging Neuroscience, University College, London) and the MarsBaR volume of interest (VOI) analysis toolbox. The results were evaluated by comparison with the known ground truth. The analysis showed improvement when using a smoothing kernel equal to system resolution over the slightly larger kernel used routinely. Significant correlation was found between effective volume of a simulated abnormality and the detected size using SPM99. Improvements in VOI analysis sensitivity were found when using the region median over the region mean. The method and dataset provide an efficient methodology for use in the comparison and cross validation of semi-quantitative analysis methods in brain SPECT, and allow the optimization of analysis parameters.

Simulated Tempering Distributed Replica Sampling, Virtual Replica Exchange, and Other Generalized-Ensemble Methods for Conformational Sampling.

PubMed

Rauscher, Sarah; Neale, Chris; Pomès, Régis

2009-10-13

Generalized-ensemble algorithms in temperature space have become popular tools to enhance conformational sampling in biomolecular simulations. A random walk in temperature leads to a corresponding random walk in potential energy, which can be used to cross over energetic barriers and overcome the problem of quasi-nonergodicity. In this paper, we introduce two novel methods: simulated tempering distributed replica sampling (STDR) and virtual replica exchange (VREX). These methods are designed to address the practical issues inherent in the replica exchange (RE), simulated tempering (ST), and serial replica exchange (SREM) algorithms. RE requires a large, dedicated, and homogeneous cluster of CPUs to function efficiently when applied to complex systems. ST and SREM both have the drawback of requiring extensive initial simulations, possibly adaptive, for the calculation of weight factors or potential energy distribution functions. STDR and VREX alleviate the need for lengthy initial simulations, and for synchronization and extensive communication between replicas. Both methods are therefore suitable for distributed or heterogeneous computing platforms. We perform an objective comparison of all five algorithms in terms of both implementation issues and sampling efficiency. We use disordered peptides in explicit water as test systems, for a total simulation time of over 42 μs. Efficiency is defined in terms of both structural convergence and temperature diffusion, and we show that these definitions of efficiency are in fact correlated. Importantly, we find that ST-based methods exhibit faster temperature diffusion and correspondingly faster convergence of structural properties compared to RE-based methods. Within the RE-based methods, VREX is superior to both SREM and RE. On the basis of our observations, we conclude that ST is ideal for simple systems, while STDR is well-suited for complex systems.

Effect of environmental change on the morphology of tidally influenced deltas over multi-decadal timescale

NASA Astrophysics Data System (ADS)

Angamuthu, Balaji; Darby, Stephen; Nicholls, Robert

2017-04-01

An understanding of the geomorphological processes affecting deltas is essential to improve our understanding of the risks that deltas face, especially as human impacts are likely to intensify in the future. Unfortunately, there is limited reliable data on river deltas, meaning that the task of demonstrating the links between morphodynamic and environmental change is challenging. This presentation aims to answer the questions of how delta morphology evolves over multi-decadal timescales under multiple drivers, focussing on tidally-influenced deltas, as some of these, such as the Ganges-Brahmaputra-Meghna (GBM) delta are heavily populated. A series of idealised model simulations over 102 years were used to explore the influence of three key drivers on delta morphodynamics, both individually and together: (i) varying combinations of water and sediment discharges from the upstream catchment, (ii) varying rates of relative sea-level rise (RSLR), and (iii) selected human interventions within the delta, such as polders, cross-dams and changing land cover. Model simulations revealed that delta progradation rates are more sensitive to variations in water discharge than variations in fluvial sediment supply. Unlike mere aggradation during RSLR, the delta front experienced aggradational progradation due to tides. As expected, the area of the simulated sub-aerial delta increases with increasing sediment discharge, but decreases with increasing water discharge. But, human modifications are important. For example, the sub-aerial delta shrinks with increasing RSLR, but it does not when the sub-aerial delta is polderised, provided the polders are restricted from erosion. However, the polders are vulnerable to flooding as they lose relative elevation and can make the delta building process unsustainable. Cross-dams built to steer zones of land accretion within the delta accomplish their local goal, but may not result in net land gain at the scale of the delta. Applying these results to the contemporary GBM delta implies that cross-dams and polders have been a key control on the morphodynamic evolution of the GBM delta over the last 60 years. However, with increased fluvial water discharge and rates of RSLR likely under greenhouse gas (GHG) -driven warming, the continuing use of sediment starved polders will only increase the vulnerability of poldered areas from regular flooding, and eventually may lead to catastrophic, permanent, inundation of the land. Hence, the future trend of morphological evolution of the GBM delta depends on local human intervention, including measures to raise the elevation of the land to cope with the continuing trend of RSLR and varying fluvial discharges. The model findings provide a basis to establish guidelines for planned future management interventions to prevent the delta from destruction.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kyriakou, Ioanna; Emfietzoglou, Dimitris; Nojeh, Alireza

A systematic study of electron-beam penetration and backscattering in multi-walled carbon nanotube (MWCNT) materials for beam energies of {approx}0.3 to 30 keV is presented based on event-by-event Monte Carlo simulation of electron trajectories using state-of-the-art scattering cross sections. The importance of different analytic approximations for computing the elastic and inelastic electron-scattering cross sections for MWCNTs is emphasized. We offer a simple parameterization for the total and differential elastic-scattering Mott cross section, using appropriate modifications to the Browning formula and the Thomas-Fermi screening parameter. A discrete-energy-loss approach to inelastic scattering based on dielectric theory is adopted using different descriptions of themore » differential cross section. The sensitivity of electron penetration and backscattering parameters to the underlying scattering models is examined. Our simulations confirm the recent experimental backscattering data on MWCNT forests and, in particular, the steep increase of the backscattering yield at sub-keV energies as well as the sidewalls escape effect at high-beam energies.« less

Investigation of flow characteristics of a single and two-adjacent natural draft dry cooling towers under cross wind condition

NASA Astrophysics Data System (ADS)

Mekanik, Abolghasem; Soleimani, Mohsen

2007-11-01

Wind effect on natural draught cooling towers has a very complex physics. The fluid flow and temperature distribution around and in a single and two adjacent (tandem and side by side) dry-cooling towers under cross wind are studied numerically in the present work. Cross-wind can significantly reduce cooling efficiency of natural-draft dry-cooling towers, and the adjacent towers can affect the cooling efficiency of both. In this paper we will present a complex computational model involving more than 750,000 finite volume cells under precisely defined boundary condition. Since the flow is turbulent, the standard k-ɛ turbulence model is used. The numerical results are used to estimate the heat transfer between radiators of the tower and air surrounding it. The numerical simulation explained the main reason for decline of the thermo-dynamical performance of dry-cooling tower under cross wind. In this paper, the incompressible fluid flow is simulated, and the flow is assumed steady and three-dimensional.

The influence of interactions between accommodation and convergence on the lag of accommodation.

PubMed

Schor, C

1999-03-01

Several models of myopia predict that growth of axial length is stimulated by blur. Accommodative lag has been suggested as an important source of blur in the development of myopia and this study has modeled how cross-link interactions between accommodation and convergence might interact with uncorrected distance heterophoria and refractive error to influence accommodative lag. Accommodative lag was simulated with two models of interactions between accommodation and convergence (one with and one without adaptable tonic elements). Simulations of both models indicate that both uncorrected hyperopia and esophoria increase the lag of accommodative and uncorrected myopia and exophoria decrease the lag or introduce a lead of accommodation in response to the near (40 cm) stimulus. These effects were increased when gain of either cross-link, accommodative convergence (AC/A) or convergence accommodation (CA/C), was increased within a moderate range of values while the other was fixed at a normal value (clamped condition). These effects were exaggerated when both the AC/A and CA/C ratios were increased (covaried condition) and affects of cross-link gain were negated when an increase of one cross-link (e.g. AC/A) was accompanied by a reduction of the other cross-link (e.g. CA/C) (reciprocal condition). The inclusion of tonic adaptation in the model reduced steady state errors of accommodation for all conditions except when the AC/A ratio was very high (2 MA/D). Combinations of cross-link interactions between accommodation and convergence that resemble either clamped or reciprocal patterns occur naturally in clinical populations. Simulations suggest that these two patterns of abnormal cross-link interactions could affect the progression of myopia differently. Adaptable tonic accommodation and tonic vergence could potentially reduce the progression of myopia by reducing the lag of accommodation.

A verification library for multibody simulation software

NASA Technical Reports Server (NTRS)

Kim, Sung-Soo; Haug, Edward J.; Frisch, Harold P.

1989-01-01

A multibody dynamics verification library, that maintains and manages test and validation data is proposed, based on RRC Robot arm and CASE backhoe validation and a comparitive study of DADS, DISCOS, and CONTOPS that are existing public domain and commercial multibody dynamic simulation programs. Using simple representative problems, simulation results from each program are cross checked, and the validation results are presented. Functionalities of the verification library are defined, in order to automate validation procedure.

Protein side chain rotational isomerization: A minimum perturbation mapping study

NASA Astrophysics Data System (ADS)

Haydock, Christopher

1993-05-01

A theory of the rotational isomerization of the indole side chain of tryptophan-47 of variant-3 scorpion neurotoxin is presented. The isomerization potential energy, entropic part of the isomerization free energy, isomer probabilities, transition state theory reaction rates, and indole order parameters are calculated from a minimum perturbation mapping over tryptophan-47 χ1×χ2 torsion space. A new method for calculating the fluorescence anisotropy from molecular dynamics simulations is proposed. The method is based on an expansion that separates transition dipole orientation from chromophore dynamics. The minimum perturbation potential energy map is inverted and applied as a bias potential for a 100 ns umbrella sampling simulation. The entropic part of the isomerization free energy as calculated by minimum perturbation mapping and umbrella sampling are in fairly close agreement. Throughout, the approximation is made that two glutamine and three tyrosine side chains neighboring tryptophan-47 are truncated at the Cβ atom. Comparison with the previous combination thermodynamic perturbation and umbrella sampling study suggests that this truncated neighbor side chain approximation leads to at least a qualitatively correct theory of tryptophan-47 rotational isomerization in the wild type variant-3 scorpion neurotoxin. Analysis of van der Waals interactions in a transition state region indicates that for the simulation of barrier crossing trajectories a linear combination of three specially defined dihedral angles will be superior to a simple side chain dihedral reaction coordinate.

Effect of bar cross-section and female housing material on retention of mandibular implant bar overdentures: A comparative in vitro study.

PubMed

Abdel-Khalek, Elsayed A; Ibrahim, Abdullah M

2017-01-01

The aim of this study is to evaluate the effect of different cross-sections of bar connecting two implants on the retention of mandibular overdentures with Hader clip or lined with heat-cured resilient liner as a housing material. The retentive values after simulated 1.5 years of service were also recorded. Edentulous mandibular acrylic model was constructed with two dummy implants located in the canine region and connected with cast bar assembly. According to bar cross-section and anchoring method, four groups ( n = 10) of identical overdentures were used as Hader bar/clip group (HCG), Hader bar/silicone liner female housing group (HSG), oval bar/silicone liner female housing group (OSG), and round bar/silicone liner female housing group (RSG). Each overdenture sample was subjected to simulated wear up to 2740 manual insertions/separations. The mean retentive forces were measured at the baseline and after every 500 insertions. The data were statistically analyzed using one-way analysis of variance. The present study demonstrated that all bar cross-sections showed a significant difference at the baseline ( P < 0.05), but HSG showed greater initial retention compared to HCG, OSG, and RSG. OSG showed a significant higher retention after 2740 insertions (simulated five insertions/day). Within the limitation of this in vitro study and for a similar period of service, heat-cured silicone female housing for Hader bar could maintain greater retention for two-implant-retained overdentures than provided by conventional plastic clip after 1.5 year. The oval bar recorded reasonable initial retention values and maintained these values for 1.5 years of service.

Coherent Beam-Beam Instability in Collisions with a Large Crossing Angle

NASA Astrophysics Data System (ADS)

Ohmi, K.; Kuroo, N.; Oide, K.; Zhou, D.; Zimmermann, F.

2017-09-01

In recent years the "crab-waist collision" scheme [P. Raimondi, Proceedings of 2nd SuperB Workshop, Frascati, 2006.; M. Zobov et al., Phys. Rev. Lett. 104, 174801 (2010), 10.1103/PhysRevLett.104.174801] has become popular for circular e+ e- colliders. The designs of several future colliders are based on this scheme. So far the beam-beam effects for collisions under a large crossing angle with or without crab waist were mostly studied using weak-strong simulations. We present here strong-strong simulations showing a novel strong coherent head-tail instability, which can limit the performance of proposed future colliders. We explain the underlying instability mechanism starting from the "cross-wake force" induced by the beam-beam interaction. Using this beam-beam wake, the beam-beam head tail modes are studied by an eigenmode analysis. The instability may affect all collider designs based on the crab-waist scheme. We suggest an experimental verification at SuperKEKB during its commissioning phase II.

Mechanical versus kinematical shortening reconstructions of the Zagros High Folded Zone (Kurdistan Region of Iraq)

NASA Astrophysics Data System (ADS)

Frehner, M.; Reif, D.; Grasemann, B.

2012-04-01

Our study compares kinematical and mechanical techniques for the palinspastic reconstruction of folded cross-sections in collision orogens. The studied area and the reconstructed NE-SW-trending, 55.5 km long cross-section is located in the High Folded Zone of the Zagros fold-and-thrust belt in the Kurdistan Region of Iraq. The present-day geometry of the cross-section has been constructed from field, as well as remote sensing data. In a first step, the structures and the stratigraphy are simplified and summarized in eight units trying to identify the main geometric and mechanical parameters. In a second step, the shortening is kinematically estimated using the dip-domain method to 11%-15%. Then the same cross-section is used in a numerical finite-element model to perform dynamical unfolding simulations taking various rheological parameters into account. The main factor allowing for an efficient dynamic unfolding is the presence of interfacial slip conditions between the mechanically strong units. Other factors, such as Newtonian vs. power-law viscous rheology or the presence of a basement affect the numerical simulations much less strongly. If interfacial slip is accounted for, fold amplitudes are reduced efficiently during the dynamical unfolding simulations, while welded layer interfaces lead to unrealistic shortening estimates. It is suggested that interfacial slip and decoupling of the deformation along detachment horizons is an important mechanical parameter that controlled the folding processes in the Zagros High Folded Zone.

Physical and Numerical Model Studies of Cross-flow Turbines Towards Accurate Parameterization in Array Simulations

NASA Astrophysics Data System (ADS)

Wosnik, M.; Bachant, P.

2014-12-01

Cross-flow turbines, often referred to as vertical-axis turbines, show potential for success in marine hydrokinetic (MHK) and wind energy applications, ranging from small- to utility-scale installations in tidal/ocean currents and offshore wind. As turbine designs mature, the research focus is shifting from individual devices to the optimization of turbine arrays. It would be expensive and time-consuming to conduct physical model studies of large arrays at large model scales (to achieve sufficiently high Reynolds numbers), and hence numerical techniques are generally better suited to explore the array design parameter space. However, since the computing power available today is not sufficient to conduct simulations of the flow in and around large arrays of turbines with fully resolved turbine geometries (e.g., grid resolution into the viscous sublayer on turbine blades), the turbines' interaction with the energy resource (water current or wind) needs to be parameterized, or modeled. Models used today--a common model is the actuator disk concept--are not able to predict the unique wake structure generated by cross-flow turbines. This wake structure has been shown to create "constructive" interference in some cases, improving turbine performance in array configurations, in contrast with axial-flow, or horizontal axis devices. Towards a more accurate parameterization of cross-flow turbines, an extensive experimental study was carried out using a high-resolution turbine test bed with wake measurement capability in a large cross-section tow tank. The experimental results were then "interpolated" using high-fidelity Navier--Stokes simulations, to gain insight into the turbine's near-wake. The study was designed to achieve sufficiently high Reynolds numbers for the results to be Reynolds number independent with respect to turbine performance and wake statistics, such that they can be reliably extrapolated to full scale and used for model validation. The end product of this work will be a cross-flow turbine actuator line model to be used as an extension to the OpenFOAM computational fluid dynamics (CFD) software framework, which will likely require modifications to commonly-used dynamic stall models, in consideration of the turbines' high angle of attack excursions during normal operation.

Ion profiling in an ambient drift tube-ion mobility spectrometer using a high pixel density linear array detector IonCCD.

PubMed

Davila, Stephen J; Hadjar, Omar; Eiceman, Gary A

2013-07-16

A linear pixel-based detector array, the IonCCD, is characterized for use under ambient conditions with thermal (<1 eV) positive ions derived from purified air and a 10 mCi (63)Ni foil. The IonCCD combined with a drift tube-ion mobility spectrometer permitted the direct detection of gas phase ions at atmospheric pressure and confirmed a limit of detection of 3000 ions/pixel/frame established previously in both the keV (1-2 keV) and the hyper-thermal (10-40 eV) regimes. Results demonstrate the "broad-band" application of the IonCCD over 10(5) orders in ion energy and over 10(10) in operating pressure. The Faraday detector of a drift tube for an ion mobility spectrometer was replaced with the IonCCD providing images of ion profiles over the cross-section of the drift tube. Patterns in the ion profiles were developed in the drift tube cross-section by control of electric fields between wires of Bradbury Nielson and Tyndall Powell shutter designs at distances of 1-8 cm from the detector. Results showed that ion beams formed in wire sets, retained their shape with limited mixing by diffusion and Coulombic repulsion. Beam broadening determined as 95 μm/cm for hydrated protons in air with moisture of ~10 ppmv. These findings suggest a value of the IonCCD in further studies of ion motion and diffusion of thermalized ions, enhancing computational results from simulation programs, and in the design or operation of ion mobility spectrometers.

Magnetic resonance electrical impedance tomography (MREIT): simulation study of J-substitution algorithm.

PubMed

Kwon, Ohin; Woo, Eung Je; Yoon, Jeong-Rock; Seo, Jin Keun

2002-02-01

We developed a new image reconstruction algorithm for magnetic resonance electrical impedance tomography (MREIT). MREIT is a new EIT imaging technique integrated into magnetic resonance imaging (MRI) system. Based on the assumption that internal current density distribution is obtained using magnetic resonance imaging (MRI) technique, the new image reconstruction algorithm called J-substitution algorithm produces cross-sectional static images of resistivity (or conductivity) distributions. Computer simulations show that the spatial resolution of resistivity image is comparable to that of MRI. MREIT provides accurate high-resolution cross-sectional resistivity images making resistivity values of various human tissues available for many biomedical applications.

Cross-talk between the ligand- and DNA-binding domains of estrogen receptor.

PubMed

Huang, Wei; Greene, Geoffrey L; Ravikumar, Krishnakumar M; Yang, Sichun

2013-11-01

Estrogen receptor alpha (ERα) is a hormone-responsive transcription factor that contains several discrete functional domains, including a ligand-binding domain (LBD) and a DNA-binding domain (DBD). Despite a wealth of knowledge about the behaviors of individual domains, the molecular mechanisms of cross-talk between LBD and DBD during signal transduction from hormone to DNA-binding of ERα remain elusive. Here, we apply a multiscale approach combining coarse-grained (CG) and atomistically detailed simulations to characterize this cross-talk mechanism via an investigation of the ERα conformational landscape. First, a CG model of ERα is built based on crystal structures of individual LBDs and DBDs, with more emphasis on their interdomain interactions. Second, molecular dynamics simulations are implemented and enhanced sampling is achieved via the "push-pull-release" strategy in the search for different LBD-DBD orientations. Third, multiple energetically stable ERα conformations are identified on the landscape. A key finding is that estradiol-bound LBDs utilize the well-described activation helix H12 to pack and stabilize LBD-DBD interactions. Our results suggest that the estradiol-bound LBDs can serve as a scaffold to position and stabilize the DBD-DNA complex, consistent with experimental observations of enhanced DNA binding with the LBD. Final assessment using atomic-level simulations shows that these CG-predicted models are significantly stable within a 15-ns simulation window and that specific pairs of lysine residues in close proximity at the domain interfaces could serve as candidate sites for chemical cross-linking studies. Together, these simulation results provide a molecular view of the role of ERα domain interactions in response to hormone binding. Copyright © 2013 Wiley Periodicals, Inc.

Level crossing analysis of cosmic microwave background radiation: a method for detecting cosmic strings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Movahed, M. Sadegh; Khosravi, Shahram, E-mail: m.s.movahed@ipm.ir, E-mail: khosravi@ipm.ir

2011-03-01

In this paper we study the footprint of cosmic string as the topological defects in the very early universe on the cosmic microwave background radiation. We develop the method of level crossing analysis in the context of the well-known Kaiser-Stebbins phenomenon for exploring the signature of cosmic strings. We simulate a Gaussian map by using the best fit parameter given by WMAP-7 and then superimpose cosmic strings effects on it as an incoherent and active fluctuations. In order to investigate the capability of our method to detect the cosmic strings for the various values of tension, Gμ, a simulated puremore » Gaussian map is compared with that of including cosmic strings. Based on the level crossing analysis, the superimposed cosmic string with Gμ∼>4 × 10{sup −9} in the simulated map without instrumental noise and the resolution R = 1' could be detected. In the presence of anticipated instrumental noise the lower bound increases just up to Gμ∼>5.8 × 10{sup −9}.« less

EVALUATION OF THE ABILITY OF CHLORINE TO INACTIVATE SELECTED ORGANISMS FROM THE BIOFILM OF A DRINKING WATER DISTRIBUTION SYSTEM SIMULATOR FOLLOWING A LONG-TERM WASTEWATER CROSS-CONNECTION

EPA Science Inventory

The drinking water distribution system simulator (DSS) from the U.S. EPA was operated with a direct cross-connection of 0.3% wastewater to system volume per day for 70 d. During the cross-connection, tap water, wastewater, and system discharge water were monitored to ensure that ...

Pharmacodynamic evaluation of intragastric pH and implications for famotidine dosing in the prophylaxis of non-steroidal anti-inflammatory drug induced gastropathy-a proof of concept analysis.

PubMed

Kent, Jeffery D; Holt, Robert J; Jung, Donald; Tidmarsh, George F; Grahn, Amy Y; Ball, Julie; Peura, David A

2014-01-01

Famotidine given at a dose of 80 mg/day is effective in preventing NSAID-induced gastropathy. The aim of this proof of concept study was to compare twice a day (BID) vs 3-times a day (TID) administration of this total dose of famotidine on intragastric pH in healthy volunteers. Two analyses were undertaken: (1) a 13 subject controlled cross-over 24-h intragastric pH evaluation of the BID and TID administration of 80 mg/day of famotidine, as well as measures for drug accumulation over 5 days (EudraCT, number 2006-002930-39); and (2) a pharmacokinetic (PK)/pharmacodynamic (PD) model which predicted steady-state famotidine plasma concentrations and pH of the two regimens. For the cross-over study, gastric pH was above 3.5 for a mean of 20 min longer for TID dosing compared to BID dosing on Day 1. On Day 5, the mean time above this threshold was higher with the BID regimen by ∼25 min. For pH 4, subjects' gastric pH was above this pH value for a mean of 25 min longer for TID dosing compared to BID dosing on Day 1. For Day 5, the pH was above 4 for ∼45 min longer with the TID regimen as compared with the BID regimen. The mean 24-h gastric pH values when taken in the upright position trended higher for the TID dosing period compared to the BID regimen on Day 1. The steady-state simulation model indicated that, following TID dosing, intragastric pH will be above 3 for 24 h vs 16 h for the BID regimen. There was no evidence for plasma accumulation of famotidine with TID dosing as compared to BID dosing from either analysis. The data indicate that overall more time is spent above the acidic threshold pH values when 80 mg/day of famotidine is administered TID vs BID. Key limitations included small study size with a short duration and lack of a baseline examination, but was compensated for by the cross-over and PK/PD modeling design. Although most of the comparisons in this proof of concept study were not statistically significant these results have important implications for future research on gastric acid lowering agents used for the prevention of NSAID-induced gastropathy.

Application of Koopmans' theorem for density functional theory to full valence-band photoemission spectroscopy modeling.

PubMed

Li, Tsung-Lung; Lu, Wen-Cai

2015-10-05

In this work, Koopmans' theorem for Kohn-Sham density functional theory (KS-DFT) is applied to the photoemission spectra (PES) modeling over the entire valence-band. To examine the validity of this application, a PES modeling scheme is developed to facilitate a full valence-band comparison of theoretical PES spectra with experiments. The PES model incorporates the variations of electron ionization cross-sections over atomic orbitals and a linear dispersion of spectral broadening widths. KS-DFT simulations of pristine rubrene (5,6,11,12-tetraphenyltetracene) and potassium-rubrene complex are performed, and the simulation results are used as the input to the PES models. Two conclusions are reached. First, decompositions of the theoretical total spectra show that the dissociated electron of the potassium mainly remains on the backbone and has little effect on the electronic structures of phenyl side groups. This and other electronic-structure results deduced from the spectral decompositions have been qualitatively obtained with the anionic approximation to potassium-rubrene complexes. The qualitative validity of the anionic approximation is thus verified. Second, comparison of the theoretical PES with the experiments shows that the full-scale simulations combined with the PES modeling methods greatly enhance the agreement on spectral shapes over the anionic approximation. This agreement of the theoretical PES spectra with the experiments over the full valence-band can be regarded, to some extent, as a collective validation of the application of Koopmans' theorem for KS-DFT to valence-band PES, at least, for this hydrocarbon and its alkali-adsorbed complex. Copyright © 2015 Elsevier B.V. All rights reserved.

Benchmarking the evaluated proton differential cross sections suitable for the EBS analysis of natSi and 16O

NASA Astrophysics Data System (ADS)

Kokkoris, M.; Dede, S.; Kantre, K.; Lagoyannis, A.; Ntemou, E.; Paneta, V.; Preketes-Sigalas, K.; Provatas, G.; Vlastou, R.; Bogdanović-Radović, I.; Siketić, Z.; Obajdin, N.

2017-08-01

The evaluated proton differential cross sections suitable for the Elastic Backscattering Spectroscopy (EBS) analysis of natSi and 16O, as obtained from SigmaCalc 2.0, have been benchmarked over a wide energy and angular range at two different accelerator laboratories, namely at N.C.S.R. 'Demokritos', Athens, Greece and at Ruđer Bošković Institute (RBI), Zagreb, Croatia, using a variety of high-purity thick targets of known stoichiometry. The results are presented in graphical and tabular forms, while the observed discrepancies, as well as, the limits in accuracy of the benchmarking procedure, along with target related effects, are thoroughly discussed and analysed. In the case of oxygen the agreement between simulated and experimental spectra was generally good, while for silicon serious discrepancies were observed above Ep,lab = 2.5 MeV, suggesting that a further tuning of the appropriate nuclear model parameters in the evaluated differential cross-section datasets is required.

Adaptive Window Zero-Crossing-Based Instantaneous Frequency Estimation

NASA Astrophysics Data System (ADS)

Sekhar, S. Chandra; Sreenivas, TV

2004-12-01

We address the problem of estimating instantaneous frequency (IF) of a real-valued constant amplitude time-varying sinusoid. Estimation of polynomial IF is formulated using the zero-crossings of the signal. We propose an algorithm to estimate nonpolynomial IF by local approximation using a low-order polynomial, over a short segment of the signal. This involves the choice of window length to minimize the mean square error (MSE). The optimal window length found by directly minimizing the MSE is a function of the higher-order derivatives of the IF which are not available a priori. However, an optimum solution is formulated using an adaptive window technique based on the concept of intersection of confidence intervals. The adaptive algorithm enables minimum MSE-IF (MMSE-IF) estimation without requiring a priori information about the IF. Simulation results show that the adaptive window zero-crossing-based IF estimation method is superior to fixed window methods and is also better than adaptive spectrogram and adaptive Wigner-Ville distribution (WVD)-based IF estimators for different signal-to-noise ratio (SNR).

Leading non-Gaussian corrections for diffusion orientation distribution function.

PubMed

Jensen, Jens H; Helpern, Joseph A; Tabesh, Ali

2014-02-01

An analytical representation of the leading non-Gaussian corrections for a class of diffusion orientation distribution functions (dODFs) is presented. This formula is constructed from the diffusion and diffusional kurtosis tensors, both of which may be estimated with diffusional kurtosis imaging (DKI). By incorporating model-independent non-Gaussian diffusion effects, it improves on the Gaussian approximation used in diffusion tensor imaging (DTI). This analytical representation therefore provides a natural foundation for DKI-based white matter fiber tractography, which has potential advantages over conventional DTI-based fiber tractography in generating more accurate predictions for the orientations of fiber bundles and in being able to directly resolve intra-voxel fiber crossings. The formula is illustrated with numerical simulations for a two-compartment model of fiber crossings and for human brain data. These results indicate that the inclusion of the leading non-Gaussian corrections can significantly affect fiber tractography in white matter regions, such as the centrum semiovale, where fiber crossings are common. 2013 John Wiley & Sons, Ltd.

Leading Non-Gaussian Corrections for Diffusion Orientation Distribution Function

PubMed Central

Jensen, Jens H.; Helpern, Joseph A.; Tabesh, Ali

2014-01-01

An analytical representation of the leading non-Gaussian corrections for a class of diffusion orientation distribution functions (dODFs) is presented. This formula is constructed out of the diffusion and diffusional kurtosis tensors, both of which may be estimated with diffusional kurtosis imaging (DKI). By incorporating model-independent non-Gaussian diffusion effects, it improves upon the Gaussian approximation used in diffusion tensor imaging (DTI). This analytical representation therefore provides a natural foundation for DKI-based white matter fiber tractography, which has potential advantages over conventional DTI-based fiber tractography in generating more accurate predictions for the orientations of fiber bundles and in being able to directly resolve intra-voxel fiber crossings. The formula is illustrated with numerical simulations for a two-compartment model of fiber crossings and for human brain data. These results indicate that the inclusion of the leading non-Gaussian corrections can significantly affect fiber tractography in white matter regions, such as the centrum semiovale, where fiber crossings are common. PMID:24738143

Comparative Evaluation of Stress Distribution in Experimentally Designed Nickel-titanium Rotary Files with Varying Cross Sections: A Finite Element Analysis.

PubMed

Basheer Ahamed, Shadir Bughari; Vanajassun, Purushothaman Pranav; Rajkumar, Kothandaraman; Mahalaxmi, Sekar

2018-04-01

Single cross-sectional nickel-titanium (NiTi) rotary instruments during continuous rotations are subjected to constant and variable stresses depending on the canal anatomy. This study was intended to create 2 new experimental, theoretic single-file designs with combinations of triple U (TU), triangle (TR), and convex triangle (CT) cross sections and to compare their bending stresses in simulated root canals with a single cross-sectional instrument using finite element analysis. A 3-dimensional model of the simulated root canal with 45° curvature and NiTi files with 5 cross-sectional designs were created using Pro/ENGINEER Wildfire 4.0 software (PTC Inc, Needham, MA) and ANSYS software (version 17; ANSYS, Inc, Canonsburg, PA) for finite element analysis. The NiTi files of 3 groups had single cross-sectional shapes of CT, TR, and TU designs, and 2 experimental groups had a CT, TR, and TU (CTU) design and a TU, TR, and CT (UTC) design. The file was rotated in simulated root canals to analyze the bending stress, and the von Mises stress value for every file was recorded in MPa. Statistical analysis was performed using the Kruskal-Wallis test and the Bonferroni-adjusted Mann-Whitney test for multiple pair-wise comparison with a P value <.05 (95 %). The maximum bending stress of the rotary file was observed in the apical third of the CT design, whereas comparatively less stress was recorded in the CTU design. The TU and TR designs showed a similar stress pattern at the curvature, whereas the UTC design showed greater stress in the apical and middle thirds of the file in curved canals. All the file designs showed a statistically significant difference. The CTU designed instruments showed the least bending stress on a 45° angulated simulated root canal when compared with all the other tested designs. Copyright © 2017 American Association of Endodontists. Published by Elsevier Inc. All rights reserved.

Solar System Chaos and Orbital Solutions for Paleoclimate Studies: Limits and New Results

NASA Astrophysics Data System (ADS)

Zeebe, R. E.

2017-12-01

I report results from accurate numerical integrations of Solar System orbits over the past 100 Myr. The simulations used different integrator algorithms, step sizes, and initial conditions (NASA, INPOP), and included effects from general relativity, different models of the Moon, the Sun's quadrupole moment, and up to ten asteroids. In one simulation, I probed the potential effect of a hypothetical Planet 9 on the dynamics of the system. The most expensive integration required 4 months wall-clock time (Bulirsch-Stoer algorithm) and showed a maximum relative energy error < 2.5e{-13} over the past 100 Myr. The difference in Earth's eccentricity (DeE) was used to track the difference between two solutions, which were considered to diverge at time tau when DeE irreversibly crossed 10% of Earth's mean eccentricity ( 0.028 x 0.1). My results indicate that finding a unique orbital solution is limited by initial conditions from current ephemerides to 54 Myr. Bizarrely, the 4-month Bulirsch-Stoer integration and a different integration scheme that required only 5 hours wall-clock time (symplectic, 12-day time step, Moon as a simple quadrupole perturbation), agree to 63 Myr. Solutions including 3 and 10 asteroids diverge at tau 48 Myr. The effect of a hypothetical Planet 9 on DeE becomes discernible at 66 Myr. Using tau as a criterion, the current state-of-the-art solutions all differ from previously published results beyond 50 Myr. The current study provides new orbital solutions for application in geological studies. I will also comment on the prospect of constraining astronomical solutions by geologic data.

Experimental and theoretical simulation studies on picosecond closed-aperture Z-scan profiles of N,N‧-Bis(2,5,-di-tert-butylphenyl)-3,4,9,10-perylenedicarboximide (DBPI)

NASA Astrophysics Data System (ADS)

Tripathy, Umakanta; Rallabandi, Sailaja; Bisht, Prem B.

2017-10-01

The optical nonlinear refractive and absorptive parameters of the dye N,N‧-Bis(2,5,-di-tert-butylphenyl)-3,4,9,10-perylenedicarboximide (DBPI) in 96% sulphuric acid have been obtained by a single closed-aperture (CA) Z-scan technique with picosecond pulses at the wavelength of 532 nm. Here a theoretical model was used to deduce both the refractive and absorptive optical nonlinearity present simultaneously in the CA Z-scan profile. Under the range of concentrations and energies studied here, we found that the effect of saturable absorption (SA) is dominating at higher concentrations (i.e. 1.0 × 10-3 M), whereas the reverse saturable absorption (RSA) effect was taken over at dilute concentrations (i.e. 1.0 × 10-4 M and 1.0 × 10-5 M). The dominance of absorptive nonlinearity over the refractive nonlinearity results in a low value of the refractive cross-section (σr). A relative increase in the value of σr is observed with decrease in the dye concentration. Mathematical modeling of CA Z-scan profiles of DBPI shows the existence of peak-valley or valley-peak structure depending upon the contribution of nonlinear absorption. The optical nonlinear parameters have also been estimated by theoretical simulation studies as a function of wavelength and compared with the experimental results. The dye DBPI has been found to be suitable as an important highly photostable molecule for photonic devices in the visible region (400-630 nm).

An empirical analysis of the distribution of the duration of overshoots in a stationary gaussian stochastic process

NASA Technical Reports Server (NTRS)

Parrish, R. S.; Carter, M. C.

1974-01-01

This analysis utilizes computer simulation and statistical estimation. Realizations of stationary gaussian stochastic processes with selected autocorrelation functions are computer simulated. Analysis of the simulated data revealed that the mean and the variance of a process were functionally dependent upon the autocorrelation parameter and crossing level. Using predicted values for the mean and standard deviation, by the method of moments, the distribution parameters was estimated. Thus, given the autocorrelation parameter, crossing level, mean, and standard deviation of a process, the probability of exceeding the crossing level for a particular length of time was calculated.

Quantifying fish habitat associated with stream simulation design culverts in northern Wisconsin

Treesearch

A. Timm; D. Higgins; J. Stanovick; R. Kolka; S. Eggert

2017-01-01

This study investigated the effects of culvert replacement design on fish habitat and fish weight by comparing substrate diversity and weight at three stream simulation (SS)-design and three bankfull and backwater (BB)-design sites on the Chequamegon-Nicolet National Forest, Wisconsin. Stream channel cross-sections, Wolman substrate particle counts, and single-pass...

The Context Is the Message?! Learning about the Israeli-Palestinian Conflict through Computerized Simulations in Different National Contexts

ERIC Educational Resources Information Center

Kampf, Ronit

2016-01-01

Two cross-national experimental studies examined the effects of PeaceMaker and Global Conflicts on knowledge acquisition and attitude change regarding the Israeli-Palestinian conflict. PeaceMaker and Global Conflicts are role-playing computerized simulations of this conflict. 248 undergraduate students from Turkey, Israel, Palestine and the US…

Children's Perception of Gap Affordances: Bicycling Across Traffic-Filled Intersections in an Immersive Virtual Environment

ERIC Educational Resources Information Center

Plumert, Jodie M.; Kearney, Joseph K.; Cremer, James F.

2004-01-01

This study examined gap choices and crossing behavior in children and adults using an immersive, interactive bicycling simulator. Ten- and 12-year-olds and adults rode a bicycle mounted on a stationary trainer through a virtual environment consisting of a street with 6 intersections. Participants faced continuous cross traffic traveling at 25mph…

A Comparison of Linking Methods for Estimating National Trends in International Comparative Large-Scale Assessments in the Presence of Cross-national DIF

ERIC Educational Resources Information Center

Sachse, Karoline A.; Roppelt, Alexander; Haag, Nicole

2016-01-01

Trend estimation in international comparative large-scale assessments relies on measurement invariance between countries. However, cross-national differential item functioning (DIF) has been repeatedly documented. We ran a simulation study using national item parameters, which required trends to be computed separately for each country, to compare…

Tidal Distortion and Disruption of Earth-Crossing Asteriods

NASA Technical Reports Server (NTRS)

Love, Stanley G.; Bottke, William, Jr.

1997-01-01

We represent results of numerical simulations that show Earth's tidal forces can both distort and disrupt Earth-crossing asteriods (ECAs) that have weak rubble-pile structures. Building on previous studies, we consider more realistic asteriod shapes and trajectories, test a variety of spin and rates and axis orientations, and employ a dissipation algorithm to more accurately treat collisions between particles.

Convection and macrosegregation in Al-19Cu alloy directionally solidified through an abrupt contraction in cross-section: A comparison with Al-7Si

NASA Astrophysics Data System (ADS)

Ghods, M.; Lauer, M.; Grugel, R. N.; Tewari, S. N.; Poirier, D. R.

2017-02-01

Hypoeutectic Al-19 wt. % Cu alloys were directionally solidified in cylindrical molds that featured an abrupt cross-section decrease 9.5 to 3.2 mm in diameter). Thermo-solutal convection and cross-section-change-induced shrinkage flow effects on macrosegregation were investigated. Dendrite clustering and extensive radial macrosegregation was seen, particularly in the larger cross-section before contraction. This alloy shows positive longitudinal macrosegregation near the contraction followed by negative macrosegregation right after it; the extent of macrosegregation, however, decreases with increasing growth speed. The degree of thermo-solutal convection was compared to another study investigating directional solidification of Al-7 wt. % Si [1] in order to study the effect of solutal expansion coefficient on macrosegregation. An interesting change of the radial macrosegregation profile, attributable to the area-change-induced-shrinkage flow, was observed very close to the contraction. A two-dimensional model accounting for both shrinkage and thermo-solutal convection was used to simulate solidification, the resulting steepling as well as axial and radial macrosegregation. The experimentally observed macrosegregation associated with the contraction during directional solidification was well predicted by the numerical simulations.

Cross-Shear Implementation in Sliding-Distance-Coupled Finite Element Analysis of Wear in Metal-on-Polyethylene Total Joint Arthroplasty: Intervertebral Total Disc Replacement as an Illustrative Application

PubMed Central

Goreham-Voss, Curtis M.; Hyde, Philip J.; Hall, Richard M.; Fisher, John; Brown, Thomas D.

2010-01-01

Computational simulations of wear of orthopaedic total joint replacement implants have proven to valuably complement laboratory physical simulators, for pre-clinical estimation of abrasive/adhesive wear propensity. This class of numerical formulations has primarily involved implementation of the Archard/Lancaster relationship, with local wear computed as the product of (finite element) contact stress, sliding speed, and a bearing-couple-dependent wear factor. The present study introduces an augmentation, whereby the influence of interface cross-shearing motion transverse to the prevailing molecular orientation of the polyethylene articular surface is taken into account in assigning the instantaneous local wear factor. The formulation augment is implemented within a widely-utilized commercial finite element software environment (ABAQUS). Using a contemporary metal-on-polyethylene total disc replacement (ProDisc-L) as an illustrative implant, physically validated computational results are presented to document the role of cross-shearing effects in alternative laboratory consensus testing protocols. Going forward, this formulation permits systematically accounting for cross-shear effects in parametric computational wear studies of metal-on-polyethylene joint replacements, heretofore a substantial limitation of such analyses. PMID:20399432

A Regional Model Study of Synoptic Features Over West Africa

NASA Technical Reports Server (NTRS)

Druyan, Leonard M.; Fulakeza, Matthew; Lonergan, Patrick; Saloum, Mahaman; Hansen, James E. (Technical Monitor)

2001-01-01

Synoptic weather features over West Africa were studied in simulations by the regional simulation model (RM) at the NASA/Goddard Institute for Space Studies. These pioneering simulations represent the beginning of an effort to adapt regional models for weather and climate prediction over West Africa. The RM uses a cartesian grid with 50 km horizontal resolution and fifteen vertical levels. An ensemble of four simulations was forced with lateral boundary conditions from ECMWF global analyses for the period 8-22 August 1988. The simulated mid-tropospheric circulation includes the skillful development and movement of several African wave disturbances. Wavelet analysis of mid-tropospheric winds detected a dominant periodicity of about 4 days and a secondary periodicity of 5-8 days. Spatial distributions of RM precipitation and precipitation time series were validated against daily rain gauge measurements and ISCCP satellite infrared cloud imagery. The time-space distribution of simulated precipitation was made more realistic by combining the ECMWR initial conditions with a 24-hr spin-up of the moisture field and also by damping high frequency gravity waves by dynamic initialization. Model precipitation "forecasts" over the Central Sahel were correlated with observations for about three days, but reinitializing with observed data on day 5 resulted in a dramatic improvement in the precipitation validation over the remaining 9 days. Results imply that information via the lateral boundary conditions is not always sufficient to minimize departures between simulated and actual precipitation patterns for more than several days. In addition, there was some evidence that the new initialization may increase the simulations' sensitivity to the quality of lateral boundary conditions.

Rectangular illumination using a secondary optics with cylindrical lens for LED street light.

PubMed

Chen, Hsi-Chao; Lin, Jun-Yu; Chiu, Hsuan-Yi

2013-02-11

The illumination pattern of an LED street light is required to have a rectangular distribution at a divergence-angle ratio of 7:3 for economical illumination. Hence, research supplying a secondary optics with two cylindrical lenses was different from free-form curvature for rectangular illumination. The analytical solution for curvatures with different ratio rectangles solved this detail by light tracing and boundary conditions. Similarities between the experiments and the simulation for a single LED and a 9-LED module were analyzed by Normalized Cross Correlation (NCC), and the error rate was studied by the Root Mean Square (RMS). The tolerance of position must be kept under ± 0.2 mm in the x, y and z directions to ensure that the relative illumination is over 99%.

The study of the influence of the diameter ratio and blade number to the performance of the cross flow wind turbine by using 2D computational fluid dynamics modeling

NASA Astrophysics Data System (ADS)

Tjahjana, Dominicus Danardono Dwi Prija; Purbaningrum, Pradityasari; Hadi, Syamsul; Wicaksono, Yoga Arob; Adiputra, Dimas

2018-02-01

Cross flow turbine can be one of the alternative energies for regions with low wind speed. Collision between wind and the blades which happened two times caused the cross flow turbine to have high power coefficient. Some factors that influence the turbine power coefficient are diameter ratio and blade number. The objective of the research was to study the effect of the diameter ratio and the blade number to the cross flow wind turbine performance. The study was done in two dimensional (2D) computational fluid dynamics (CFD) simulation method using the ANSYS-Fluent software. The turbine diameter ratio were 0.58, 0.63, 0.68 and 0.73. The diameter ratio resulting in the highest power coefficient value was then simulated by varying the number of blades, namely 16, 20 and 24. Each variation was tested on the wind speed of 2 m/s and at the tip speed ratio (TSR) of 0.1 to 0.4 with the interval of 0.1. The wind turbine with the ratio diameter of 0.68 and the number of blades of 20 generated the highest power coefficient of 0.5 at the TSR of 0.3.

Cross-over studies underestimate energy compensation: The example of sucrose-versus sucralose-containing drinks.

PubMed

Gadah, Nouf S; Brunstrom, Jeffrey M; Rogers, Peter J

2016-12-01

The vast majority of preload-test-meal studies that have investigated the effects on energy intake of disguised nutrient or other food/drink ingredient manipulations have used a cross-over design. We argue that this design may underestimate the effect of the manipulation due to carry-over effects. To test this we conducted comparable cross-over (n = 69) and parallel-groups (n = 48) studies testing the effects of sucrose versus low-calorie sweetener (sucralose) in a drink preload on test-meal energy intake. The parallel-groups study included a baseline day in which only the test meal was consumed. Energy intake in that meal was used to control for individual differences in energy intake in the analysis of the effects of sucrose versus sucralose on energy intake on the test day. Consistent with our prediction, the effect of consuming sucrose on subsequent energy intake was greater when measured in the parallel-groups study than in the cross-over study (respectively 64% versus 36% compensation for the 162 kcal difference in energy content of the sucrose and sucralose drinks). We also included a water comparison group in the parallel-groups study (n = 24) and found that test-meal energy intake did not differ significantly between the water and sucralose conditions. Together, these results confirm that consumption of sucrose in a drink reduces subsequent energy intake, but by less than the energy content of the drink, whilst drink sweetness does not increase food energy intake. Crucially, though, the studies demonstrate that study design affects estimated energy compensation. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Simulation of Ionospheric Response During Solar Eclipse Events

NASA Astrophysics Data System (ADS)

Kordella, L.; Earle, G. D.; Huba, J.

2016-12-01

Total solar eclipses are rare, short duration events that present interesting case studies of ionospheric behavior because the structure of the ionosphere is determined and stabilized by varying energies of solar radiation (Lyman alpha, X-ray, U.V., etc.). The ionospheric response to eclipse events is a source of scientific intrigue that has been studied in various capacities over the past 50 years. Unlike the daily terminator crossings, eclipses cause highly localized, steep gradients of ionization efficiency due to their comparatively small solar zenith angle. However, the corona remains present even at full obscuration, meaning that the energy reduction never falls to the levels seen at night. Previous eclipse studies performed by research groups in the US, UK, China and Russia have shown a range of effects, some counter-intuitive and others contradictory. In the shadowed region of an eclipse (i.e. umbra) it is logical to assume a reduction in ionization rates correlating with the reduction of incident solar radiation. Results have shown that even this straightforward hypothesis may not be true; effects on plasma distribution, motion and temperature are more appreciable than might be expected. Recent advancements in ionospheric simulation codes present the opportunity to investigate the relationship between geophysical conditions and geomagnetic location on resulting eclipse event ionosphere. Here we present computational simulation results using the Naval Research Lab (NRL) developed ionospheric modeling codes Sami2 and Sami3 (Sami2 is Another Model of the Ionosphere) modified with spatio-temporal photoionization attenuation functions derived from theory and empirical data.

OMI observations of bromine monoxide emissions from salt lakes

NASA Astrophysics Data System (ADS)

Suleiman, R. M.; Chance, K.; Liu, X.; Gonzalez Abad, G.; Kurosu, T. P.

2015-12-01

In this study, we analyze bromine monoxide (BrO) data from the Ozone Monitoring Instrument (OMI) over various salt lakes. We used OMI data from 2005 to 2014 to investigate BrO signatures from salt lakes. The salt lakes regions we cover include Dead Sea; Salt Lake City, US; Salar de Uyuni, Bolivia; and Namtso, Tibet. Elevated signatures of BrO was found in July and August BrO monthly averages over the Dead Sea. Similar results were found in the BrO monthly averages for August 2006 for the Bolivian Salt Flats. We present a detailed description of the retrieval algorithm for the OMI operational bromine monoxide (BrO) product. The algorithm is based on direct fitting of radiances from 319.0-347.5 nm, within the UV-2 channel of OMI. Radiances are modeled from the solar irradiance, attenuated by contributions from the target gas and interfering gases, rotational Raman scattering, additive and multiplicative closure polynomials and a common mode spectrum. The common mode spectra (one per cross-track position, computed on-line) are the average of several hundred fitting residuals. They include any instrument effects that are unrelated to molecular scattering and absorption cross sections. The BrO retrieval uses albedo- and wavelength-dependent air mass factors (AMFs), which have been pre-computed using climatological BrO profiles. The wavelength-dependent AMF is applied pre-fit to the BrO cross-sections so that vertical column densities are retrieved directly. We validate OMI BrO with ground-based measurements from three stations (Harestua, Lauder, and Barrow) and with chemical transport model simulations. We analyze the global distribution and seasonal variation of BrO and investigate BrO emissions from volcanoes and salt lakes.

Radar cross-section measurements and simulation of a tethered satellite. The small expendable deployer system end-mass payload

NASA Technical Reports Server (NTRS)

Cravey, Robin L.; Fralick, Dion T.; Vedeler, Erik

1995-01-01

The first Small Expendable Deployer System (SEDS-1), a tethered satellite system, was developed by NASA and launched March 29, 1993 as a secondary payload on a United State Air Force (USAF) Delta-2 launch vehicle. The SEDS-1 successfully deployed an instrumented end-mass payload (EMP) on a 20-km nonconducting tether from the second stage of the Delta 2. This paper describes the effort of NASA Langley Research Center's Antenna and Microwave Research Branch to provide assistance to the SEDS Investigators Working Group (IWG) in determining EMP dynamics by analyzing the mission radar skin track data. The radar cross section measurements taken and simulations done for this study are described and comparisons of the measured data with the simulated data for the EMP at 6 GHz are presented.

Simulation of South-Asian Summer Monsoon in a GCM

NASA Astrophysics Data System (ADS)

Ajayamohan, R. S.

2007-10-01

Major characteristics of Indian summer monsoon climate are analyzed using simulations from the upgraded version of Florida State University Global Spectral Model (FSUGSM). The Indian monsoon has been studied in terms of mean precipitation and low-level and upper-level circulation patterns and compared with observations. In addition, the model's fidelity in simulating observed monsoon intraseasonal variability, interannual variability and teleconnection patterns is examined. The model is successful in simulating the major rainbelts over the Indian monsoon region. However, the model exhibits bias in simulating the precipitation bands over the South China Sea and the West Pacific region. Seasonal mean circulation patterns of low-level and upper-level winds are consistent with the model's precipitation pattern. Basic features like onset and peak phase of monsoon are realistically simulated. However, model simulation indicates an early withdrawal of monsoon. Northward propagation of rainbelts over the Indian continent is simulated fairly well, but the propagation is weak over the ocean. The model simulates the meridional dipole structure associated with the monsoon intraseasonal variability realistically. The model is unable to capture the observed interannual variability of monsoon and its teleconnection patterns. Estimate of potential predictability of the model reveals the dominating influence of internal variability over the Indian monsoon region.

Radar Cross Section (RCS) Simulation for Wind Turbines

DTIC Science & Technology

2013-06-01

SECTION (RCS) SIMULATION FOR WIND TURBINES by Cuong Ton June 2013 Thesis Advisor: David C. Jenn Second Reader: Ric Romero THIS PAGE...TITLE AND SUBTITLE RADAR CROSS SECTION (RCS) SIMULATION FOR WIND TURBINES 5. FUNDING NUMBERS 6. AUTHOR(S) Cuong Ton 7. PERFORMING ORGANIZATION...ABSTRACT (maximum 200 words) Wind - turbine power provides energy-independence and greenhouse-gas reduction benefits, but if wind turbines are built

Peculiarities of structural transformations in metal nanoparticles at high speed collisions

NASA Astrophysics Data System (ADS)

Zolnikov, K. P.; Kryzhevich, D. S.; Korchuganov, A. V.

2018-01-01

A molecular dynamics simulation of nanosized particle collision under the electrical explosion of metal wires of different types was conducted. Interatomic interactions were described on the base of the embedded atom method. Used potentials allowed describing with high accuracy many mechanical and physical properties which are very important for the simulations of nanoparticle collisions with high velocities. The dynamics of the nanosized particle formation at the electric pulse explosion of metal wires of different types was studied. Features of particle collisions on the example of nanoscale particles of copper and nickel, whose velocities varied from 50 to 1500 m/s were investigated. The peculiarities of structural transformations in the colliding particles depending on the velocity of collision were determined. The intervals of collision velocities in which interaction between particles is elastic or leads to the formation of structural defects or melting were calculated. The analysis of the structure and distribution of chemical elements over the cross section of the particles which were synthesized under simultaneous explosions of different metal wires was carried out.

Homogenous Nucleation and Crystal Growth in a Model Liquid from Direct Energy Landscape Sampling Simulation

NASA Astrophysics Data System (ADS)

Walter, Nathan; Zhang, Yang

Nucleation and crystal growth are understood to be activated processes involving the crossing of free-energy barriers. Attempts to capture the entire crystallization process over long timescales with molecular dynamic simulations have met major obstacles because of molecular dynamics' temporal constraints. Herein, we circumvent this temporal limitation by using a brutal-force, metadynamics-like, adaptive basin-climbing algorithm and directly sample the free-energy landscape of a model liquid Argon. The algorithm biases the system to evolve from an amorphous liquid like structure towards an FCC crystal through inherent structure, and then traces back the energy barriers. Consequently, the sampled timescale is macroscopically long. We observe that the formation of a crystal involves two processes, each with a unique temperature-dependent energy barrier. One barrier corresponds to the crystal nucleus formation; the other barrier corresponds to the crystal growth. We find the two processes dominate in different temperature regimes. Compared to other computation techniques, our method requires no assumptions about the shape or chemical potential of the critical crystal nucleus. The success of this method is encouraging for studying the crystallization of more complex

High fidelity polycrystalline CdTe/CdS heterostructures via molecular dynamics

DOE PAGES

Aguirre, Rodolfo; Chavez, Jose Juan; Zhou, Xiaowang; ...

2017-06-20

Molecular dynamics simulations of polycrystalline growth of CdTe/CdS heterostructures have been performed. First, CdS was deposited on an amorphous CdS substrate, forming a polycrystalline film. Subsequently, CdTe was deposited on top of the polycrystalline CdS film. Cross-sectional images show grain formation at early stages of the CdS growth. During CdTe deposition, the CdS structure remains almost unchanged. Concurrently, CdTe grain boundary motion was detected after the first 24.4 nanoseconds of CdTe deposition. With the elapse of time, this grain boundary pins along the CdS/CdTe interface, leaving only a small region of epitaxial growth. CdTe grains are larger than CdS grainsmore » in agreement with experimental observations in the literature. Crystal phase analysis shows that zinc blende structure dominates over the wurtzite structure inside both CdS and CdTe grains. Composition analysis shows Te and S diffusion to the CdS and CdTe films, respectively. Lastly, these simulated results may stimulate new ideas for studying and improving CdTe solar cell efficiency.« less

The Passive Microwave Neural Network Precipitation Retrieval (PNPR) for AMSU/MHS and ATMS cross-track scanning radiometers

NASA Astrophysics Data System (ADS)

Sano', Paolo; Casella, Daniele; Panegrossi, Giulia; Cinzia Marra, Anna; Dietrich, Stefano

2016-04-01

Spaceborne microwave cross-track scanning radiometers, originally developed for temperature and humidity sounding, have shown great capabilities to provide a significant contribution in precipitation monitoring both in terms of measurement quality and spatial/temporal coverage. The Passive microwave Neural network Precipitation Retrieval (PNPR) algorithm for cross-track scanning radiometers, originally developed for the Advanced Microwave Sounding Unit/Microwave Humidity Sounder (AMSU-A/MHS) radiometers (on board the European MetOp and U.S. NOAA satellites), was recently newly designed to exploit the Advanced Technology Microwave Sounder (ATMS) on board the Suomi-NPP satellite and the future JPSS satellites. The PNPR algorithm is based on the Artificial Neural Network (ANN) approach. The main PNPR-ATMS algorithm changes with respect to PNPR-AMSU/MHS are the design and implementation of a new ANN able to manage the information derived from the additional ATMS channels (respect to the AMSU-A/MHS radiometer) and a new screening procedure for not-precipitating pixels. In order to achieve maximum consistency of the retrieved surface precipitation, both PNPR algorithms are based on the same physical foundation. The PNPR is optimized for the European and the African area. The neural network was trained using a cloud-radiation database built upon 94 cloud-resolving simulations over Europe and the Mediterranean and over the African area and radiative transfer model simulations of TB vectors consistent with the AMSU-A/MHS and ATMS channel frequencies, viewing angles, and view-angle dependent IFOV sizes along the scan projections. As opposed to other ANN precipitation retrieval algorithms, PNPR uses a unique ANN that retrieves the surface precipitation rate for all types of surface backgrounds represented in the training database, i.e., land (vegetated or arid), ocean, snow/ice or coast. This approach prevents different precipitation estimates from being inconsistent with one another when an observed precipitation system extends over two or more types of surfaces. As input data, the PNPR algorithm incorporates the TBs from selected channels, and various additional TBs-derived variables. Ancillary geographical/geophysical inputs (i.e., latitude, terrain height, surface type, season) are also considered during the training phase. The PNPR algorithm outputs consist of both the surface precipitation rate (along with the information on precipitation phase: liquid, mixed, solid) and a pixel-based quality index. We will illustrate the main features of the PNPR algorithm and will show results of a verification study over Europe and Africa. The study is based on the available ground-based radar and/or rain gauge network observations over the European area. In addition, results of the comparison with rainfall products available from the NASA/JAXA Tropical Rainfall Measuring Mission (TRMM) Precipitation Radar (PR) (over the African area) and Global Precipitation Measurement (GPM) Dual frequency Precipitation Radar (DPR) will be shown. The analysis is built upon a two-years coincidence dataset of AMSU/MHS and ATMS observations with PR (2013-2014) and DPR (2014-2015). The PNPR is developed within the EUMETSAT H/SAF program (Satellite Application Facility for Operational Hydrology and Water Management), where it is used operationally towards the full exploitation of all microwave radiometers available in the GPM era. The algorithm will be tailored to the future European Microwave Sounder (MWS) onboard the MetOp-Second Generation (MetOp-SG) satellites.

Assessment of the simulated climate in two versions of the RegT-Band

NASA Astrophysics Data System (ADS)

da Rocha, Rosmeri; Reboita, Michelle; Llopart, Marta

2017-04-01

This study evaluates two simulations carried out with the tropical band version of the Regional Climate Model (RegT-Band). The purpose was to compare the performance of the RegCM 4.4.5 and 4.6 versions (RegT4.4.5 and RegT4.6). The domain used in the simulations extends from 45° S to 45° N and covers all tropical longitudes, with grid spacing of 39 km, 18 sigma-pressure vertical levels. The initial and boundary conditions for the simulations were provided by ERA-Interim reanalysis and the analyzed period is from January 2005 to December 2008. Regarding the physical parameterizations schemes were used the Emanuel scheme to solve cumulus convection and Community Land Model version 4.5 (CLM4.5) to surface-atmosphere interactions. Seasonal simulated precipitation was compared with Global Precipitation Climatology Project (GPCP) while 2 meters air temperature with ERA-Interim reanalysis. The main results of this study are that RegT4.6 reduces the wet bias over the oceans and the cold bias over the continents compared with RegT4.4.5. In austral summer, RegT4.6 improves the simulation reducing the precipitation amounts mainly over Indian Ocean, Indonesia and eastern northeastern Brazil. However, both versions underestimate the precipitation over the South America Convergence Zone (SACZ). During the austral winter, RegT4.6 simulates the precipitation similar to GPCP over India and it reduces the cold bias over this country compared with RegT4.4.5. However, over the South of Africa, Australia and central-southeast South America, RegT4.6 simulates a strong warm bias.

Aspect of ECMWF downscaled Regional Climate Modeling in simulating Indian summer monsoon rainfall and dependencies on lateral boundary conditions

NASA Astrophysics Data System (ADS)

Ghosh, Soumik; Bhatla, R.; Mall, R. K.; Srivastava, Prashant K.; Sahai, A. K.

2018-03-01

Climate model faces considerable difficulties in simulating the rainfall characteristics of southwest summer monsoon. In this study, the dynamical downscaling of European Centre for Medium-Range Weather Forecast's (ECMWF's) ERA-Interim (EIN15) has been utilized for the simulation of Indian summer monsoon (ISM) through the Regional Climate Model version 4.3 (RegCM-4.3) over the South Asia Co-Ordinated Regional Climate Downscaling EXperiment (CORDEX) domain. The complexities of model simulation over a particular terrain are generally influenced by factors such as complex topography, coastal boundary, and lack of unbiased initial and lateral boundary conditions. In order to overcome some of these limitations, the RegCM-4.3 is employed for simulating the rainfall characteristics over the complex topographical conditions. For reliable rainfall simulation, implementations of numerous lower boundary conditions are forced in the RegCM-4.3 with specific horizontal grid resolution of 50 km over South Asia CORDEX domain. The analysis is considered for 30 years of climatological simulation of rainfall, outgoing longwave radiation (OLR), mean sea level pressure (MSLP), and wind with different vertical levels over the specified region. The dependency of model simulation with the forcing of EIN15 initial and lateral boundary conditions is used to understand the impact of simulated rainfall characteristics during different phases of summer monsoon. The results obtained from this study are used to evaluate the activity of initial conditions of zonal wind circulation speed, which causes an increase in the uncertainty of regional model output over the region under investigation. Further, the results showed that the EIN15 zonal wind circulation lacks sufficient speed over the specified region in a particular time, which was carried forward by the RegCM output and leads to a disrupted regional simulation in the climate model.

Simulation of the modern arctic climate by the NCAR CCM1

NASA Technical Reports Server (NTRS)

Bromwich, David H.; Tzeng, Ren-Yow; Parish, Thomas, R.

1994-01-01

The National Center of Atmospheric Research (NCAR) Community Climate Model Version 1 (CCM1's) simulation of the modern arctic climate is evaluated by comparing a five-year seasonal cycle simulation with the European Center for Medium-Range Weather Forecasts (ECMWF) global analyses. The sea level pressure (SLP), storm tracks, vertical cross section of height, 500-hPa height, total energy budget, and moisture budget are analyzed to investigate the biases in the simulated arctic climate. The results show that the model simulates anomalously low SLP, too much storm activity, and anomalously strong baroclinicity to the west of Greenland and vice versa to the east of Greenland. This bias is mainly attributed to the model's topographic representation of Greenland. First, the broadened Greenland topography in the model distorts the path of cyclone waves over the North Atlantic Ocean. Second, the model oversimulates the ridge over Greenland, which intensifies its blocking effect and steers the cyclone waves clockwise around it and hence produces an artificial circum-Greenland trough. These biases are significantly alleviated when the horizontal resolution increases to T42. Over the Arctic basin, the model simulates large amounts of low-level (stratus) clouds in winter and almost no stratus in summer, which is opposite to the observations. This bias is mainly due to the location of the simulated SLP features and the negative anomaly of storm activity, which prevent the transport of moisture into this region during summer but favor this transport in winter. The moisture budget analysis shows that the model's net annual precipitation (P-E) between 70 deg N and the North Pole is 6.6 times larger than the observations and the model transports six times more moisture into this region. The bias in the advection term is attributed to the positive moisture fixer scheme and the distorted flow pattern. However, the excessive moisture transport into the Arctic basin does not solely result from the advection term. The contribution by the moisture fixer is as large as from advection. By contrast, the semi-Lagrangian transport scheme used in the CCM2 significantly improves the moisture simulation for this region; however, globally the error is as serious as for the positive moisture fixer scheme. Finally, because the model has such serious problems in simulating the present arctic climate, its simulations of past and future climate change for this region are questionable.

Statistical analysis of the location of the Martian magnetic pileup boundary and bow shock and the influence of crustal magnetic fields

NASA Astrophysics Data System (ADS)

Edberg, N. J. T.; Lester, M.; Cowley, S. W. H.; Eriksson, A. I.

2008-08-01

We use the data set from the magnetometer and electron reflectometer instruments on board the Mars Global Surveyor spacecraft to show that the crustal magnetic fields of Mars affect the location of the magnetic pileup boundary (MPB) and bow shock (BS) globally. We search for crossings of the MPB and BS in the data that were observed over the first 16 months of the mission. To identify the influence of the crustal magnetic fields, all crossings are extrapolated to the terminator plane in order to remove the solar zenith angle (SZA) dependence, and to make it possible to compare crossings independently of location. The MPB crossings that were observed over regions on Mars, which contain strong crustal magnetic fields, are on average located further out than crossings observed over regions with weak crustal fields. This is shown in three separate longitude intervals. We also find that the dayside BS crossings observed over the southern hemisphere of Mars are on average located further out than the BS crossings observed over the northern hemisphere, possibly because of the influence of the crustal fields. We also study the magnetic field strength and its variation at the inside of the MPB and their dependence on the SZA and altitude. We find that the magnitude of the magnetic field in the MPB is closely linked to the altitude of the MPB, with the magnitude increasing as the MPB is observed closer to the planet.

Pressure effects on the relaxation of an excited nitromethane molecule in an argon bath

NASA Astrophysics Data System (ADS)

Rivera-Rivera, Luis A.; Wagner, Albert F.; Sewell, Thomas D.; Thompson, Donald L.

2015-01-01

Classical molecular dynamics simulations were performed to study the relaxation of nitromethane in an Ar bath (of 1000 atoms) at 300 K and pressures 10, 50, 75, 100, 125, 150, 300, and 400 atm. The molecule was instantaneously excited by statistically distributing 50 kcal/mol among the internal degrees of freedom. At each pressure, 1000 trajectories were integrated for 1000 ps, except for 10 atm, for which the integration time was 5000 ps. The computed ensemble-averaged rotational energy decay is ˜100 times faster than the vibrational energy decay. Both rotational and vibrational decay curves can be satisfactorily fit with the Lendvay-Schatz function, which involves two parameters: one for the initial rate and one for the curvature of the decay curve. The decay curves for all pressures exhibit positive curvature implying the rate slows as the molecule loses energy. The initial rotational relaxation rate is directly proportional to density over the interval of simulated densities, but the initial vibrational relaxation rate decreases with increasing density relative to the extrapolation of the limiting low-pressure proportionality to density. The initial vibrational relaxation rate and curvature are fit as functions of density. For the initial vibrational relaxation rate, the functional form of the fit arises from a combinatorial model for the frequency of nitromethane "simultaneously" colliding with multiple Ar atoms. Roll-off of the initial rate from its low-density extrapolation occurs because the cross section for collision events with L Ar atoms increases with L more slowly than L times the cross section for collision events with one Ar atom. The resulting density-dependent functions of the initial rate and curvature represent, reasonably well, all the vibrational decay curves except at the lowest density for which the functions overestimate the rate of decay. The decay over all gas phase densities is predicted by extrapolating the fits to condensed-phase densities.

Pressure effects on the relaxation of an excited nitromethane molecule in an argon bath

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rivera-Rivera, Luis A.; Wagner, Albert F.; Sewell, Thomas D.

2015-01-07

Classical molecular dynamics simulations were performed to study the relaxation of nitromethane in an Ar bath (of 1000 atoms) at 300 K and pressures 10, 50, 75, 100, 125, 150, 300, and 400 atm. The molecule was instantaneously excited by statistically distributing 50 kcal/mol among the internal degrees of freedom. At each pressure, 1000 trajectories were integrated for 1000 ps, except for 10 atm, for which the integration time was 5000 ps. The computed ensemble-averaged rotational energy decay is similar to 100 times faster than the vibrational energy decay. Both rotational and vibrational decay curves can be satisfactorily fit withmore » the Lendvay-Schatz function, which involves two parameters: one for the initial rate and one for the curvature of the decay curve. The decay curves for all pressures exhibit positive curvature implying the rate slows as the molecule loses energy. The initial rotational relaxation rate is directly proportional to density over the interval of simulated densities, but the initial vibrational relaxation rate decreases with increasing density relative to the extrapolation of the limiting low-pressure proportionality to density. The initial vibrational relaxation rate and curvature are fit as functions of density. For the initial vibrational relaxation rate, the functional form of the fit arises from a combinatorial model for the frequency of nitromethane "simultaneously" colliding with multiple Ar atoms. Roll-off of the initial rate from its low-density extrapolation occurs because the cross section for collision events with L Ar atoms increases with L more slowly than L times the cross section for collision events with one Ar atom. The resulting density-dependent functions of the initial rate and curvature represent, reasonably well, all the vibrational decay curves except at the lowest density for which the functions overestimate the rate of decay. The decay over all gas phase densities is predicted by extrapolating the fits to condensed-phase densities. (C) 2015 AIP Publishing LLC.« less

Pressure effects on the relaxation of an excited nitromethane molecule in an argon bath.

PubMed

Rivera-Rivera, Luis A; Wagner, Albert F; Sewell, Thomas D; Thompson, Donald L

2015-01-07

Classical molecular dynamics simulations were performed to study the relaxation of nitromethane in an Ar bath (of 1000 atoms) at 300 K and pressures 10, 50, 75, 100, 125, 150, 300, and 400 atm. The molecule was instantaneously excited by statistically distributing 50 kcal/mol among the internal degrees of freedom. At each pressure, 1000 trajectories were integrated for 1000 ps, except for 10 atm, for which the integration time was 5000 ps. The computed ensemble-averaged rotational energy decay is ∼100 times faster than the vibrational energy decay. Both rotational and vibrational decay curves can be satisfactorily fit with the Lendvay-Schatz function, which involves two parameters: one for the initial rate and one for the curvature of the decay curve. The decay curves for all pressures exhibit positive curvature implying the rate slows as the molecule loses energy. The initial rotational relaxation rate is directly proportional to density over the interval of simulated densities, but the initial vibrational relaxation rate decreases with increasing density relative to the extrapolation of the limiting low-pressure proportionality to density. The initial vibrational relaxation rate and curvature are fit as functions of density. For the initial vibrational relaxation rate, the functional form of the fit arises from a combinatorial model for the frequency of nitromethane "simultaneously" colliding with multiple Ar atoms. Roll-off of the initial rate from its low-density extrapolation occurs because the cross section for collision events with L Ar atoms increases with L more slowly than L times the cross section for collision events with one Ar atom. The resulting density-dependent functions of the initial rate and curvature represent, reasonably well, all the vibrational decay curves except at the lowest density for which the functions overestimate the rate of decay. The decay over all gas phase densities is predicted by extrapolating the fits to condensed-phase densities.

Pressure effects on the relaxation of an excited nitromethane molecule in an argon bath

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rivera-Rivera, Luis A.; Sewell, Thomas D.; Thompson, Donald L.

2015-01-07

Classical molecular dynamics simulations were performed to study the relaxation of nitromethane in an Ar bath (of 1000 atoms) at 300 K and pressures 10, 50, 75, 100, 125, 150, 300, and 400 atm. The molecule was instantaneously excited by statistically distributing 50 kcal/mol among the internal degrees of freedom. At each pressure, 1000 trajectories were integrated for 1000 ps, except for 10 atm, for which the integration time was 5000 ps. The computed ensemble-averaged rotational energy decay is ∼100 times faster than the vibrational energy decay. Both rotational and vibrational decay curves can be satisfactorily fit with the Lendvay-Schatzmore » function, which involves two parameters: one for the initial rate and one for the curvature of the decay curve. The decay curves for all pressures exhibit positive curvature implying the rate slows as the molecule loses energy. The initial rotational relaxation rate is directly proportional to density over the interval of simulated densities, but the initial vibrational relaxation rate decreases with increasing density relative to the extrapolation of the limiting low-pressure proportionality to density. The initial vibrational relaxation rate and curvature are fit as functions of density. For the initial vibrational relaxation rate, the functional form of the fit arises from a combinatorial model for the frequency of nitromethane “simultaneously” colliding with multiple Ar atoms. Roll-off of the initial rate from its low-density extrapolation occurs because the cross section for collision events with L Ar atoms increases with L more slowly than L times the cross section for collision events with one Ar atom. The resulting density-dependent functions of the initial rate and curvature represent, reasonably well, all the vibrational decay curves except at the lowest density for which the functions overestimate the rate of decay. The decay over all gas phase densities is predicted by extrapolating the fits to condensed-phase densities.« less

Driver's behavioural changes with new intelligent transport system interventions at railway level crossings--A driving simulator study.

PubMed

Larue, Grégoire S; Kim, Inhi; Rakotonirainy, Andry; Haworth, Narelle L; Ferreira, Luis

2015-08-01

Improving safety at railway level crossings is an important issue for the Australian transport system. Governments, the rail industry and road organisations have tried a variety of countermeasures for many years to improve railway level crossing safety. New types of intelligent transport system (ITS) interventions are now emerging due to the availability and the affordability of technology. These interventions target both actively and passively protected railway level crossings and attempt to address drivers' errors at railway crossings, which are mainly a failure to detect the crossing or the train and misjudgement of the train approach speed and distance. This study aims to assess the effectiveness of three emerging ITS that the rail industry considers implementing in Australia: a visual in-vehicle ITS, an audio in-vehicle ITS, as well as an on-road flashing beacons intervention. The evaluation was conducted on an advanced driving simulator with 20 participants per trialled technology, each participant driving once without any technology and once with one of the ITS interventions. Every participant drove through a range of active and passive crossings with and without trains approaching. Their speed approach of the crossing, head movements and stopping compliance were measured. Results showed that driver behaviour was changed with the three ITS interventions at passive crossings, while limited effects were found at active crossings, even with reduced visibility. The on-road intervention trialled was unsuccessful in improving driver behaviour; the audio and visual ITS improved driver behaviour when a train was approaching. A trend toward worsening driver behaviour with the visual ITS was observed when no trains were approaching. This trend was not observed for the audio ITS intervention, which appears to be the ITS intervention with the highest potential for improving safety at passive crossings. Copyright © 2015 Elsevier Ltd. All rights reserved.

Tropical Cyclone Formation in 30-day Simulation Using Cloud-System-Resolving Global Nonhydrostatic Model (NICAM)

NASA Astrophysics Data System (ADS)

Yanase, W.; Satoh, M.; Iga, S.; Tomita, H.

2007-12-01

We are developing an icosahedral-grid non-hydrostatic AGCM, which can explicitly represent cumulus or meso-scale convection over the entire globe. We named the model NICAM (Nonhydrostatic ICosahedral Atmospheric Model). On 2005, we have performed a simulations with horizontal grid intervals of 14, 7 and 3.5 km using realistic topography and sea surface temperature in April 2004 (Miura et al., 2007; GRL). It simulated a typhoon Sudal that actually developed over the Northwestern Pacific in 2004. In the present study, the NICAM model with the horizontal grid interval of 14 km was used for perpetual July experiment with 30 forecasting days. In this simulation, several tropical cyclones formed over the wesetern and eastern North Pacific, althought the formation over the western North Pacific occured a little further north to the actually observed region. The mature tropical cyclones with intense wind speed had a structure of a cloud-free eye and eye wall. We have found that the enviromental parameters associated with the tropical cyclone genesis explain well the simulated region of tropical cyclone generation. Over the North Atlantic and eastern North Pacific, westward-moving disturbances like African wave are simulated, which seems to be related to the cyclone formation over the eastern North Pacific. On the other hand, the simulated tropical cyclones over the western North Pacifis seem to form by different factors as has been suggested by the previous studies based on observation. Although the model still has some problems and is under continuous improvement, we can discuss what dynamics is to be represented using a global high-resolution model.

Hypersonic, nonequilibrium flow over the FIRE 2 forebody at 1634 sec

NASA Technical Reports Server (NTRS)

Chambers, Lin Hartung

1994-01-01

The numerical simulation of hypersonic flow in thermochemical nonequilibrium over the forebody of the FIRE 2 vehicle at 1634 sec in its trajectory is described. The simulation was executed on a Cray C90 with the program Langley Aerodynamic Upwind Relaxation Algorithm (LAURA) 4.0.2. Code setup procedures and sample results, including grid refinement studies, are discussed. This simulation relates to a study of radiative heating predictions on aerobrake type vehicles.

Monte Carlo simulations of particle acceleration at oblique shocks: Including cross-field diffusion

NASA Technical Reports Server (NTRS)

Baring, M. G.; Ellison, D. C.; Jones, F. C.

1995-01-01

The Monte Carlo technique of simulating diffusive particle acceleration at shocks has made spectral predictions that compare extremely well with particle distributions observed at the quasi-parallel region of the earth's bow shock. The current extension of this work to compare simulation predictions with particle spectra at oblique interplanetary shocks has required the inclusion of significant cross-field diffusion (strong scattering) in the simulation technique, since oblique shocks are intrinsically inefficient in the limit of weak scattering. In this paper, we present results from the method we have developed for the inclusion of cross-field diffusion in our simulations, namely model predictions of particle spectra downstream of oblique subluminal shocks. While the high-energy spectral index is independent of the shock obliquity and the strength of the scattering, the latter is observed to profoundly influence the efficiency of injection of cosmic rays into the acceleration process.

An Integrated Simulation Module for Cyber-Physical Automation Systems †

PubMed Central

Ferracuti, Francesco; Freddi, Alessandro; Monteriù, Andrea; Prist, Mariorosario

2016-01-01

The integration of Wireless Sensors Networks (WSNs) into Cyber Physical Systems (CPSs) is an important research problem to solve in order to increase the performances, safety, reliability and usability of wireless automation systems. Due to the complexity of real CPSs, emulators and simulators are often used to replace the real control devices and physical connections during the development stage. The most widespread simulators are free, open source, expandable, flexible and fully integrated into mathematical modeling tools; however, the connection at a physical level and the direct interaction with the real process via the WSN are only marginally tackled; moreover, the simulated wireless sensor motes are not able to generate the analogue output typically required for control purposes. A new simulation module for the control of a wireless cyber-physical system is proposed in this paper. The module integrates the COntiki OS JAva Simulator (COOJA), a cross-level wireless sensor network simulator, and the LabVIEW system design software from National Instruments. The proposed software module has been called “GILOO” (Graphical Integration of Labview and cOOja). It allows one to develop and to debug control strategies over the WSN both using virtual or real hardware modules, such as the National Instruments Real-Time Module platform, the CompactRio, the Supervisory Control And Data Acquisition (SCADA), etc. To test the proposed solution, we decided to integrate it with one of the most popular simulators, i.e., the Contiki OS, and wireless motes, i.e., the Sky mote. As a further contribution, the Contiki Sky DAC driver and a new “Advanced Sky GUI” have been proposed and tested in the COOJA Simulator in order to provide the possibility to develop control over the WSN. To test the performances of the proposed GILOO software module, several experimental tests have been made, and interesting preliminary results are reported. The GILOO module has been applied to a smart home mock-up where a networked control has been developed for the LED lighting system. PMID:27164109

An Integrated Simulation Module for Cyber-Physical Automation Systems.

PubMed

Ferracuti, Francesco; Freddi, Alessandro; Monteriù, Andrea; Prist, Mariorosario

2016-05-05

The integration of Wireless Sensors Networks (WSNs) into Cyber Physical Systems (CPSs) is an important research problem to solve in order to increase the performances, safety, reliability and usability of wireless automation systems. Due to the complexity of real CPSs, emulators and simulators are often used to replace the real control devices and physical connections during the development stage. The most widespread simulators are free, open source, expandable, flexible and fully integrated into mathematical modeling tools; however, the connection at a physical level and the direct interaction with the real process via the WSN are only marginally tackled; moreover, the simulated wireless sensor motes are not able to generate the analogue output typically required for control purposes. A new simulation module for the control of a wireless cyber-physical system is proposed in this paper. The module integrates the COntiki OS JAva Simulator (COOJA), a cross-level wireless sensor network simulator, and the LabVIEW system design software from National Instruments. The proposed software module has been called "GILOO" (Graphical Integration of Labview and cOOja). It allows one to develop and to debug control strategies over the WSN both using virtual or real hardware modules, such as the National Instruments Real-Time Module platform, the CompactRio, the Supervisory Control And Data Acquisition (SCADA), etc. To test the proposed solution, we decided to integrate it with one of the most popular simulators, i.e., the Contiki OS, and wireless motes, i.e., the Sky mote. As a further contribution, the Contiki Sky DAC driver and a new "Advanced Sky GUI" have been proposed and tested in the COOJA Simulator in order to provide the possibility to develop control over the WSN. To test the performances of the proposed GILOO software module, several experimental tests have been made, and interesting preliminary results are reported. The GILOO module has been applied to a smart home mock-up where a networked control has been developed for the LED lighting system.

The role of alpha-, 3(10)-, and pi-helix in helix-->coil transitions.

PubMed

Armen, Roger; Alonso, Darwin O V; Daggett, Valerie

2003-06-01

The conformational equilibrium between 3(10)- and alpha-helical structure has been studied via high-resolution NMR spectroscopy by Millhauser and coworkers using the MW peptide Ac-AMAAKAWAAKA AAARA-NH2. Their 750-MHz nuclear Overhauser effect spectroscopy (NOESY) spectra were interpreted to reflect appreciable populations of 3(10)-helix throughout the peptide, with the greatest contribution at the N and C termini. The presence of simultaneous alphaN(i,i + 2) and alphaN(i,i + 4) NOE cross-peaks was proposed to represent conformational averaging between 3(10)- and alpha-helical structures. In this study, we describe 25-nsec molecular dynamics simulations of the MW peptide at 298 K, using both an 8 A and a 10 A force-shifted nonbonded cutoff. The ensemble averages of both simulations are in reasonable agreement with the experimental helical content from circular dichroism (CD), the (3)J(HNalpha) coupling constants, and the 57 observed NOEs. Analysis of the structures from both simulations revealed very little formation of contiguous i --> i + 3 hydrogen bonds (3(10)-helix); however, there was a large population of bifurcated i --> i + 3 and i --> i + 4 alpha-helical hydrogen bonds. In addition, both simulations contained considerable populations of pi-helix (i --> i + 5 hydrogen bonds). Individual turns formed over residues 1-9, which we predict contribute to the intensities of the experimentally observed alphaN(i,i + 2) NOEs. Here we show how sampling of both folded and unfolded structures can provide a structural framework for deconvolution of the conformational contributions to experimental ensemble averages.

The role of α-, 310-, and π-helix in helix→coil transitions

PubMed Central

Armen, Roger; Alonso, Darwin O.V.; Daggett, Valerie

2003-01-01

The conformational equilibrium between 310- and α-helical structure has been studied via high-resolution NMR spectroscopy by Millhauser and coworkers using the MW peptide Ac-AMAAKAWAAKA AAARA-NH2. Their 750-MHz nuclear Overhauser effect spectroscopy (NOESY) spectra were interpreted to reflect appreciable populations of 310-helix throughout the peptide, with the greatest contribution at the N and C termini. The presence of simultaneous αN(i,i + 2) and αN(i,i + 4) NOE cross-peaks was proposed to represent conformational averaging between 310- and α-helical structures. In this study, we describe 25-nsec molecular dynamics simulations of the MW peptide at 298 K, using both an 8 Å and a 10 Å force-shifted nonbonded cutoff. The ensemble averages of both simulations are in reasonable agreement with the experimental helical content from circular dichroism (CD), the 3JHNα coupling constants, and the 57 observed NOEs. Analysis of the structures from both simulations revealed very little formation of contiguous i → i + 3 hydrogen bonds (310-helix); however, there was a large population of bifurcated i → i + 3 and i → i + 4 α-helical hydrogen bonds. In addition, both simulations contained considerable populations of π-helix (i → i + 5 hydrogen bonds). Individual turns formed over residues 1–9, which we predict contribute to the intensities of the experimentally observed αN(i,i + 2) NOEs. Here we show how sampling of both folded and unfolded structures can provide a structural framework for deconvolution of the conformational contributions to experimental ensemble averages. PMID:12761385

An adaptive displacement estimation algorithm for improved reconstruction of thermal strain.

PubMed

Ding, Xuan; Dutta, Debaditya; Mahmoud, Ahmed M; Tillman, Bryan; Leers, Steven A; Kim, Kang

2015-01-01

Thermal strain imaging (TSI) can be used to differentiate between lipid and water-based tissues in atherosclerotic arteries. However, detecting small lipid pools in vivo requires accurate and robust displacement estimation over a wide range of displacement magnitudes. Phase-shift estimators such as Loupas' estimator and time-shift estimators such as normalized cross-correlation (NXcorr) are commonly used to track tissue displacements. However, Loupas' estimator is limited by phase-wrapping and NXcorr performs poorly when the SNR is low. In this paper, we present an adaptive displacement estimation algorithm that combines both Loupas' estimator and NXcorr. We evaluated this algorithm using computer simulations and an ex vivo human tissue sample. Using 1-D simulation studies, we showed that when the displacement magnitude induced by thermal strain was >λ/8 and the electronic system SNR was >25.5 dB, the NXcorr displacement estimate was less biased than the estimate found using Loupas' estimator. On the other hand, when the displacement magnitude was ≤λ/4 and the electronic system SNR was ≤25.5 dB, Loupas' estimator had less variance than NXcorr. We used these findings to design an adaptive displacement estimation algorithm. Computer simulations of TSI showed that the adaptive displacement estimator was less biased than either Loupas' estimator or NXcorr. Strain reconstructed from the adaptive displacement estimates improved the strain SNR by 43.7 to 350% and the spatial accuracy by 1.2 to 23.0% (P < 0.001). An ex vivo human tissue study provided results that were comparable to computer simulations. The results of this study showed that a novel displacement estimation algorithm, which combines two different displacement estimators, yielded improved displacement estimation and resulted in improved strain reconstruction.

An Adaptive Displacement Estimation Algorithm for Improved Reconstruction of Thermal Strain

PubMed Central

Ding, Xuan; Dutta, Debaditya; Mahmoud, Ahmed M.; Tillman, Bryan; Leers, Steven A.; Kim, Kang

2014-01-01

Thermal strain imaging (TSI) can be used to differentiate between lipid and water-based tissues in atherosclerotic arteries. However, detecting small lipid pools in vivo requires accurate and robust displacement estimation over a wide range of displacement magnitudes. Phase-shift estimators such as Loupas’ estimator and time-shift estimators like normalized cross-correlation (NXcorr) are commonly used to track tissue displacements. However, Loupas’ estimator is limited by phase-wrapping and NXcorr performs poorly when the signal-to-noise ratio (SNR) is low. In this paper, we present an adaptive displacement estimation algorithm that combines both Loupas’ estimator and NXcorr. We evaluated this algorithm using computer simulations and an ex-vivo human tissue sample. Using 1-D simulation studies, we showed that when the displacement magnitude induced by thermal strain was >λ/8 and the electronic system SNR was >25.5 dB, the NXcorr displacement estimate was less biased than the estimate found using Loupas’ estimator. On the other hand, when the displacement magnitude was ≤λ/4 and the electronic system SNR was ≤25.5 dB, Loupas’ estimator had less variance than NXcorr. We used these findings to design an adaptive displacement estimation algorithm. Computer simulations of TSI using Field II showed that the adaptive displacement estimator was less biased than either Loupas’ estimator or NXcorr. Strain reconstructed from the adaptive displacement estimates improved the strain SNR by 43.7–350% and the spatial accuracy by 1.2–23.0% (p < 0.001). An ex-vivo human tissue study provided results that were comparable to computer simulations. The results of this study showed that a novel displacement estimation algorithm, which combines two different displacement estimators, yielded improved displacement estimation and results in improved strain reconstruction. PMID:25585398

On-the-fly Doppler broadening of unresolved resonance region cross sections

DOE PAGES

Walsh, Jonathan A.; Forget, Benoit; Smith, Kord S.; ...

2017-07-29

In this paper, two methods for computing temperature-dependent unresolved resonance region cross sections on-the-fly within continuous-energy Monte Carlo neutron transport simulations are presented. The first method calculates Doppler broadened cross sections directly from zero-temperature average resonance parameters. In a simulation, at each event that requires cross section values, a realization of unresolved resonance parameters is generated about the desired energy and temperature-dependent single-level Breit-Wigner resonance cross sections are computed directly via the analytical Ψ-x Doppler integrals. The second method relies on the generation of equiprobable cross section magnitude bands on an energy-temperature mesh. Within a simulation, the bands are sampledmore » and interpolated in energy and temperature to obtain cross section values on-the-fly. Both of the methods, as well as their underlying calculation procedures, are verified numerically in extensive code-to-code comparisons. Energy-dependent pointwise cross sections calculated with the newly-implemented procedures are shown to be in excellent agreement with those calculated by a widely-used nuclear data processing code. Relative differences at or below 0.1% are observed. Integral criticality benchmark results computed with the proposed methods are shown to reproduce those computed with a state-of-the-art processed nuclear data library very well. In simulations of fast spectrum systems which are highly-sensitive to the representation of cross section data in the unresolved region, k-eigenvalue and neutron flux spectra differences of <10 pcm and <1.0% are observed, respectively. The direct method is demonstrated to be well-suited to the calculation of reference solutions — against which results obtained with a discretized representation may be assessed — as a result of its treatment of the energy, temperature, and cross section magnitude variables as continuous. Also, because there is no pre-processed data to store (only temperature-independent average resonance parameters) the direct method is very memory-efficient. Typically, only a few kB of memory are needed to store all required unresolved region data for a single nuclide. However, depending on the details of a particular simulation, performing URR cross section calculations on-the-fly can significantly increase simulation times. Alternatively, the method of interpolating equiprobable probability bands is demonstrated to produce results that are as accurate as the direct reference solutions, to within arbitrary precision, with high computational efficiency in terms of memory requirements and simulation time. Analyses of a fast spectrum system show that interpolation on a coarse energy-temperature mesh can be used to reproduce reference k-eigenvalue results obtained with cross sections calculated continuously in energy and directly at an exact temperature to within <10 pcm. Probability band data on a mesh encompassing the range of temperatures relevant to reactor analysis usually require around 100 kB of memory per nuclide. Finally, relative to the case in which probability table data generated at a single, desired temperature are used, minor increases in simulation times are observed when probability band interpolation is employed.« less

Foreground mitigation strategy for measuring the 21 cm-LAE cross-correlation

NASA Astrophysics Data System (ADS)

Yoshiura, Shintaro; Line, Jack L. B.; Kubota, Kenji; Hasegawa, Kenji; Takahashi, Keitaro

2018-05-01

The cross power spectrum of the 21 cm signal and Lyman-α emitters (LAEs) is a probe of the Epoch of Reionization. Astrophysical foregrounds do not correlate with the LAE distribution, though the foregrounds contribute to the error. To study the impact of foregrounds on the measurement, we assume realistic observation by the Murchison Widefield Array using a catalogue of radio galaxies, a LAE survey by the Subaru Hyper Supreme-Cam and the redshift of LAEs is determined by the Prime Focus Spectrograph. The HI distribution is estimated from a radiative transfer simulation with models based on results of radiation hydrodynamics simulation. Using these models, we found that the error of cross power spectrum is dominated by foreground terms. Furthermore, we estimate the effects of foreground removal, and find 99% of the foreground removal is required to detect the 21 cm-LAE signal at k ~ 0.4 h Mpc-1.

Numerical simulation of terahertz transmission of bilayer metallic meshes with different thickness of substrates

NASA Astrophysics Data System (ADS)

Zhang, Gaohui; Zhao, Guozhong; Zhang, Shengbo

2012-12-01

The terahertz transmission characteristics of bilayer metallic meshes are studied based on the finite difference time domain method. The bilayer well-shaped grid, the array of complementary square metallic pill and the cross wire-hole array were investigated. The results show that the bilayer well-shaped grid achieves a high-pass of filter function, while the bilayer array of complementary square metallic pill achieves a low-pass of filter function, the bilayer cross wire-hole array achieves a band-pass of filter function. Between two metallic microstructures, the medium need to be deposited. Obviously, medium thicknesses have an influence on the terahertz transmission characteristics of metallic microstructures. Simulation results show that with increasing the thicknesses of the medium the cut-off frequency of high-pass filter and low-pass filter move to low frequency. But the bilayer cross wire-hole array possesses two transmission peaks which display competition effect.

Two-stage crossed beam cooling with ⁶Li and ¹³³Cs atoms in microgravity.

PubMed

Luan, Tian; Yao, Hepeng; Wang, Lu; Li, Chen; Yang, Shifeng; Chen, Xuzong; Ma, Zhaoyuan

2015-05-04

Applying the direct simulation Monte Carlo (DSMC) method developed for ultracold Bose-Fermi mixture gases research, we study the sympathetic cooling process of 6Li and 133Cs atoms in a crossed optical dipole trap. The obstacles to producing 6Li Fermi degenerate gas via direct sympathetic cooling with 133Cs are also analyzed, by which we find that the side-effect of the gravity is one of the main obstacles. Based on the dynamic nature of 6Li and 133Cs atoms, we suggest a two-stage cooling process with two pairs of crossed beams in microgravity environment. According to our simulations, the temperature of 6Li atoms can be cooled to T = 29.5 pK and T/TF = 0.59 with several thousand atoms, which propose a novel way to get ultracold fermion atoms with quantum degeneracy near pico-Kelvin.

Flow in curved ducts of varying cross-section

NASA Astrophysics Data System (ADS)

Sotiropoulos, F.; Patel, V. C.

1992-07-01

Two numerical methods for solving the incompressible Navier-Stokes equations are compared with each other by applying them to calculate laminar and turbulent flows through curved ducts of regular cross-section. Detailed comparisons, between the computed solutions and experimental data, are carried out in order to validate the two methods and to identify their relative merits and disadvantages. Based on the conclusions of this comparative study a numerical method is developed for simulating viscous flows through curved ducts of varying cross-sections. The proposed method is capable of simulating the near-wall turbulence using fine computational meshes across the sublayer in conjunction with a two-layer k-epsilon model. Numerical solutions are obtained for: (1) a straight transition duct geometry, and (2) a hydroturbine draft-tube configuration at model scale Reynolds number for various inlet swirl intensities. The report also provides a detailed literature survey that summarizes all the experimental and computational work in the area of duct flows.

Monte Carlo track structure for radiation biology and space applications

NASA Technical Reports Server (NTRS)

Nikjoo, H.; Uehara, S.; Khvostunov, I. G.; Cucinotta, F. A.; Wilson, W. E.; Goodhead, D. T.

2001-01-01

Over the past two decades event by event Monte Carlo track structure codes have increasingly been used for biophysical modelling and radiotherapy. Advent of these codes has helped to shed light on many aspects of microdosimetry and mechanism of damage by ionising radiation in the cell. These codes have continuously been modified to include new improved cross sections and computational techniques. This paper provides a summary of input data for ionizations, excitations and elastic scattering cross sections for event by event Monte Carlo track structure simulations for electrons and ions in the form of parametric equations, which makes it easy to reproduce the data. Stopping power and radial distribution of dose are presented for ions and compared with experimental data. A model is described for simulation of full slowing down of proton tracks in water in the range 1 keV to 1 MeV. Modelling and calculations are presented for the response of a TEPC proportional counter irradiated with 5 MeV alpha-particles. Distributions are presented for the wall and wall-less counters. Data shows contribution of indirect effects to the lineal energy distribution for the wall counters responses even at such a low ion energy.

Spectrally tunable, temporally shaped parametric front end to seed high-energy Nd:glass laser systems

DOE PAGES

Dorrer, C.; Consentino, A.; Cuffney, R.; ...

2017-10-18

Here, we describe a parametric-amplification–based front end for seeding high-energy Nd:glass laser systems. The front end delivers up to 200 mJ by parametric amplification in 2.5-ns flat-in-time pulses tunable over more than 15 nm. Spectral tunability over a range larger than what is typically achieved by laser media at similar energy levels is implemented to investigate cross-beam energy transfer in multibeam target experiments. The front-end operation is simulated to explain the amplified signal’s sensitivity to the input pump and signal. A large variety of amplified waveforms are generated by closed-loop pulse shaping. Various properties and limitations of this front endmore » are discussed.« less

Spectrally tunable, temporally shaped parametric front end to seed high-energy Nd:glass laser systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dorrer, C.; Consentino, A.; Cuffney, R.

Here, we describe a parametric-amplification–based front end for seeding high-energy Nd:glass laser systems. The front end delivers up to 200 mJ by parametric amplification in 2.5-ns flat-in-time pulses tunable over more than 15 nm. Spectral tunability over a range larger than what is typically achieved by laser media at similar energy levels is implemented to investigate cross-beam energy transfer in multibeam target experiments. The front-end operation is simulated to explain the amplified signal’s sensitivity to the input pump and signal. A large variety of amplified waveforms are generated by closed-loop pulse shaping. Various properties and limitations of this front endmore » are discussed.« less

DAILY SIMULATIONS OF OZONE AND FINE PARTICULATES OVER THE NORTHEASTERN UNITED STATES: MODEL PERFORMANCE, SEASONAL DIFFERENCES, AND THE EFFECT OF MODEL UPDATES

EPA Science Inventory

This poster presents analysis of near-realtime air quality simulations over New York State for two summer and one winter season. Simulations were performed as a pilot study between the NOAA, EPA, and NYSDEC, utilizing resources from the national operational NOAA/EPA air quality f...

Turbulent circulation above the surface heat source in stably stratified atmosphere

NASA Astrophysics Data System (ADS)

Kurbatskii, A. F.; Kurbatskaya, L. I.

2016-10-01

The 3-level RANS approach for simulating a turbulent circulation over the heat island in a stably stratified environment under nearly calm conditions is formulated. The turbulent kinetic energy its spectral consumption (dissipation) and the dispersion of turbulent fluctuations of temperature are found from differential equations, thus the correct modeling of transport processes in the interface layer with the counter-gradient heat flux is assured. The three-parameter turbulence RANS approach minimizes difficulties in simulating the turbulent transport in a stably stratified environment and reduces efforts needed for the numerical implementation of the 3-level RANS approach. Numerical simulation of the turbulent structure of the penetrative convection over the heat island under conditions of stably stratified atmosphere demonstrates that the three-equation model is able to predict the thermal circulation induced by the heat island. The temperature distribution, root-mean-square fluctuations of the turbulent velocity and temperature fields and spectral turbulent kinetic energy flux are in good agreement with the experimental data. The model describes such thin physical effects, as a crossing of vertical profiles of temperature of a thermal plume with the formation of the negative buoyancy area testifying to development of the dome-shaped form at the top part of a plume in the form of "hat".

Development of large scale riverine terrain-bathymetry dataset by integrating NHDPlus HR with NED,CoNED and HAND data

NASA Astrophysics Data System (ADS)

Li, Z.; Clark, E. P.

2017-12-01

Large scale and fine resolution riverine bathymetry data is critical for flood inundation modelingbut not available over the continental United States (CONUS). Previously we implementedbankfull hydraulic geometry based approaches to simulate bathymetry for individual riversusing NHDPlus v2.1 data and 10 m National Elevation Dataset (NED). USGS has recentlydeveloped High Resolution NHD data (NHDPlus HR Beta) (USGS, 2017), and thisenhanced dataset has a significant improvement on its spatial correspondence with 10 m DEM.In this study, we used this high resolution data, specifically NHDFlowline and NHDArea,to create bathymetry/terrain for CONUS river channels and floodplains. A software packageNHDPlus Inundation Modeler v5.0 Beta was developed for this project as an Esri ArcGIShydrological analysis extension. With the updated tools, raw 10 m DEM was first hydrologicallytreated to remove artificial blockages (e.g., overpasses, bridges and eve roadways, etc.) usinglow pass moving window filters. Cross sections were then automatically constructed along eachflowline to extract elevation from the hydrologically treated DEM. In this study, river channelshapes were approximated using quadratic curves to reduce uncertainties from commonly usedtrapezoids. We calculated underneath water channel elevation at each cross section samplingpoint using bankfull channel dimensions that were estimated from physiographicprovince/division based regression equations (Bieger et al. 2015). These elevation points werethen interpolated to generate bathymetry raster. The simulated bathymetry raster wasintegrated with USGS NED and Coastal National Elevation Database (CoNED) (whereveravailable) to make seamless terrain-bathymetry dataset. Channel bathymetry was alsointegrated to the HAND (Height above Nearest Drainage) dataset to improve large scaleinundation modeling. The generated terrain-bathymetry was processed at WatershedBoundary Dataset Hydrologic Unit 4 (WBDHU4) level.

Can quantile mapping improve precipitation extremes from regional climate models?

NASA Astrophysics Data System (ADS)

Tani, Satyanarayana; Gobiet, Andreas

2015-04-01

The ability of quantile mapping to accurately bias correct regard to precipitation extremes is investigated in this study. We developed new methods by extending standard quantile mapping (QMα) to improve the quality of bias corrected extreme precipitation events as simulated by regional climate model (RCM) output. The new QM version (QMβ) was developed by combining parametric and nonparametric bias correction methods. The new nonparametric method is tested with and without a controlling shape parameter (Qmβ1 and Qmβ0, respectively). Bias corrections are applied on hindcast simulations for a small ensemble of RCMs at six different locations over Europe. We examined the quality of the extremes through split sample and cross validation approaches of these three bias correction methods. This split-sample approach mimics the application to future climate scenarios. A cross validation framework with particular focus on new extremes was developed. Error characteristics, q-q plots and Mean Absolute Error (MAEx) skill scores are used for evaluation. We demonstrate the unstable behaviour of correction function at higher quantiles with QMα, whereas the correction functions with for QMβ0 and QMβ1 are smoother, with QMβ1 providing the most reasonable correction values. The result from q-q plots demonstrates that, all bias correction methods are capable of producing new extremes but QMβ1 reproduces new extremes with low biases in all seasons compared to QMα, QMβ0. Our results clearly demonstrate the inherent limitations of empirical bias correction methods employed for extremes, particularly new extremes, and our findings reveals that the new bias correction method (Qmß1) produces more reliable climate scenarios for new extremes. These findings present a methodology that can better capture future extreme precipitation events, which is necessary to improve regional climate change impact studies.

A Variable Resolution Stretched Grid General Circulation Model: Regional Climate Simulation

NASA Technical Reports Server (NTRS)

Fox-Rabinovitz, Michael S.; Takacs, Lawrence L.; Govindaraju, Ravi C.; Suarez, Max J.

2000-01-01

The development of and results obtained with a variable resolution stretched-grid GCM for the regional climate simulation mode, are presented. A global variable resolution stretched- grid used in the study has enhanced horizontal resolution over the U.S. as the area of interest The stretched-grid approach is an ideal tool for representing regional to global scale interaction& It is an alternative to the widely used nested grid approach introduced over a decade ago as a pioneering step in regional climate modeling. The major results of the study are presented for the successful stretched-grid GCM simulation of the anomalous climate event of the 1988 U.S. summer drought- The straightforward (with no updates) two month simulation is performed with 60 km regional resolution- The major drought fields, patterns and characteristics such as the time averaged 500 hPa heights precipitation and the low level jet over the drought area. appear to be close to the verifying analyses for the stretched-grid simulation- In other words, the stretched-grid GCM provides an efficient down-scaling over the area of interest with enhanced horizontal resolution. It is also shown that the GCM skill is sustained throughout the simulation extended to one year. The developed and tested in a simulation mode stretched-grid GCM is a viable tool for regional and subregional climate studies and applications.

An assessment of the impact of ATMS and CrIS data assimilation on precipitation prediction over the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Xue, Tong; Xu, Jianjun; Guan, Zhaoyong; Chen, Han-Ching; Chiu, Long S.; Shao, Min

2017-07-01

Using the National Oceanic and Atmospheric Administration's Gridpoint Statistical Interpolation data assimilation system and the National Center for Atmospheric Research's Advanced Research Weather Research and Forecasting (WRF-ARW) regional model, the impact of assimilating Advanced Technology Microwave Sounder (ATMS) and Cross-track Infrared Sounder (CrIS) satellite data on precipitation prediction over the Tibetan Plateau in July 2015 was evaluated. Four experiments were designed: a control experiment and three data assimilation experiments with different data sets injected: conventional data only, a combination of conventional and ATMS satellite data, and a combination of conventional and CrIS satellite data. The results showed that the monthly mean of precipitation is shifted northward in the simulations and showed an orographic bias described as an overestimation upwind of the mountains and an underestimation in the south of the rain belt. The rain shadow mainly influenced prediction of the quantity of precipitation, although the main rainfall pattern was well simulated. For the first 24 h and last 24 h of accumulated daily precipitation, the model generally overestimated the amount of precipitation, but it was underestimated in the heavy-rainfall periods of 3-5, 13-16, and 22-25 July. The observed water vapor conveyance from the southeastern Tibetan Plateau was larger than in the model simulations, which induced inaccuracies in the forecast of heavy rain on 3-5 July. The data assimilation experiments, particularly the ATMS assimilation, were closer to the observations for the heavy-rainfall process than the control. Overall, based on the experiments in July 2015, the satellite data assimilation improved to some extent the prediction of the precipitation pattern over the Tibetan Plateau, although the simulation of the rain belt without data assimilation shows the regional shifting.

A Study of Reconnection Poleward of Cusp: Cluster and Polar

NASA Astrophysics Data System (ADS)

Muzamil, Fathima

Asymmetries in plasma density and the presence of a guide field significantly alter the structure of the ion diffusion region (IDR) in symmetric, collisionless reconnection. These features have been shown by numerical simulations under moderate density asymmetries ( 10), and theoretical analyses. However, very few studies have addressed these issues with in-situ observations, particularly at high magnetic latitudes. By the structure of the IDR we refer to features such as the non-colocation of the X-line and stagnation line, the distortion of the Hall magnetic and electric fields, outflow speed, outflow density etc. We have compiled a collection of Cluster crossings of the high-latitude magnetopause poleward of the cusp under northward interplanetary magnetic field in the years 2001-2008. We identified 18 events that fulfilled the criteria that was used as plausible evidence for an IDR crossing. A wide range of guide fields (6 to 74%) and very high density asymmetries (over three orders of magnitude) were present in this event list. The total DC electric field ranged from 10 mV/m-72 mV/m. We compared theoretical predictions for ion outflow speed and density against measured values for events with least magnetic shear and found good agreement. Peak values of both measured quantities agreed better than the average values. The separation between the X and S-lines were measured for two events. The separation was in the order of 2 ion inertial lengths. We presented a detailed analysis of a current sheet crossing hallmarked by a density asymmetry of 2 orders of magnitude ( 140) [Muzamil et al., 2014, JGR]. This event was measured by the Polar spacecraft, also at high latitudes poleward of the cusp. Data agreed well with simulation results, especially the observation of density cavities together with isolated electric fields in the normal direction at both separatrices. This has not been observed in previous observational studies. Effect of the guide field on both sides of the X-line was examined using two events with jet reversals and similar guide fields. A sunward-tailward asymmetry in the Hall magnetic field structure was observed due to the guide field in the two outflow regions. The Hall field was weakened and changed polarity in the vicinity of the X-line due to an electron velocity shear layer. Using three other crossings with high guide fields, we measured a 40-60% enhancement in the Hall magnetic field showing consistency with simulations. We then presented a case study of large episodic magnetic field depressions in the magnetosheath boundary layer region near the magnetic separatrix. We identified specific characteristics and compared them to possible generating mechanisms. The most plausible one was kinetic Alfven waves. Thus, we have provided observational evidence for the structure of the IDR in poleward of the cusp under several different asymmetric conditions and guide fields.

Large-Eddy Simulations of Atmospheric Flows Over Complex Terrain Using the Immersed-Boundary Method in the Weather Research and Forecasting Model

NASA Astrophysics Data System (ADS)

Ma, Yulong; Liu, Heping

2017-12-01

Atmospheric flow over complex terrain, particularly recirculation flows, greatly influences wind-turbine siting, forest-fire behaviour, and trace-gas and pollutant dispersion. However, there is a large uncertainty in the simulation of flow over complex topography, which is attributable to the type of turbulence model, the subgrid-scale (SGS) turbulence parametrization, terrain-following coordinates, and numerical errors in finite-difference methods. Here, we upgrade the large-eddy simulation module within the Weather Research and Forecasting model by incorporating the immersed-boundary method into the module to improve simulations of the flow and recirculation over complex terrain. Simulations over the Bolund Hill indicate improved mean absolute speed-up errors with respect to previous studies, as well an improved simulation of the recirculation zone behind the escarpment of the hill. With regard to the SGS parametrization, the Lagrangian-averaged scale-dependent Smagorinsky model performs better than the classic Smagorinsky model in reproducing both velocity and turbulent kinetic energy. A finer grid resolution also improves the strength of the recirculation in flow simulations, with a higher horizontal grid resolution improving simulations just behind the escarpment, and a higher vertical grid resolution improving results on the lee side of the hill. Our modelling approach has broad applications for the simulation of atmospheric flows over complex topography.

Modeling sediment transport from an off-road vehicle trail stream crossing using WEPP model

Treesearch

Renee' D. Ayala; Puneet Srivastava; Christian J. Brodbeck; Emily A. Carter; Timothy P. McDonald

2005-01-01

There is a limited information available pertaining to the adverse effects of Off-Road-Vehicle (ORV) use and trail impacts. As a result, this study was initiated in 2003 to (a) quantify water quality impacts of an ORV trail stream crossing through monitoring of total suspended solids, and (b) conduct WEPP (Water Erosion Prediction Project) simulations to determine long...

Constraints Pb-210 and Be-7 on Wet Deposition and Transport in a Global Three-Dimensional Chemical Tracer Model Driven by Assimilated Meteorological Fields

NASA Technical Reports Server (NTRS)

Liu, Hong-Yu; Jacob, Daniel J.; Bey, Isabelle; Yantosca, Robert M.

2001-01-01

The atmospheric distributions of the aerosol tracers Pb-210 and Be-7 are simulated with a global three-dimensional model driven by assimilated meteorological observations for 1991-1996 from the NASA Goddard Earth Observing System (GEOSl). The combination of terrigenic Pb-210 and cosmogenic Be-7 provides a sensitive test of wet deposition and vertical transport in the model. Our simulation of moist transport and removal includes scavenging in wet convective updrafts (40% scavenging efficiency per kilometer of updraft), midlevel entrainment and detrainment, first-order rainout and washout from both convective anvils and large-scale precipitation, and cirrus precipitation. Observations from surface sites in specific years are compared to model results for the corresponding meteorological years, and observations from aircraft missions over the Pacific are compared to model results for the days of the flights. Initial simulation of Be-7 showed that cross-tropopause transport in the GEOSl meteorological fields is too fast by a factor of 3-4. We adjusted the stratospheric Be-7 source to correct the tropospheric simulation. Including this correction, we find that the model gives a good simulation of observed Pb-210 and Be-7 concentrations and deposition fluxes at surface sites worldwide, with no significant global bias and with significant success in reproducing the observed latitudinal and seasonal distributions. We achieve several improvements over previous models; in particular, we reproduce the observed Be-7 minimum in the tropics and show that its simulation is sensitive to rainout from convective anvils. Comparisons with aircraft observations up to 12-km altitude suggest that cirrus precipitation could be important for explaining the low concentrations in the middle and upper troposphere.

A quasi two-dimensional model for sound attenuation by the sonic crystals.

PubMed

Gupta, A; Lim, K M; Chew, C H

2012-10-01

Sound propagation in the sonic crystal (SC) along the symmetry direction is modeled by sound propagation through a variable cross-sectional area waveguide. A one-dimensional (1D) model based on the Webster horn equation is used to obtain sound attenuation through the SC. This model is compared with two-dimensional (2D) finite element simulation and experiment. The 1D model prediction of frequency band for sound attenuation is found to be shifted by around 500 Hz with respect to the finite element simulation. The reason for this shift is due to the assumption involved in the 1D model. A quasi 2D model is developed for sound propagation through the waveguide. Sound pressure profiles from the quasi 2D model are compared with the finite element simulation and the 1D model. The result shows significant improvement over the 1D model and is in good agreement with the 2D finite element simulation. Finally, sound attenuation through the SC is computed based on the quasi 2D model and is found to be in good agreement with the finite element simulation. The quasi 2D model provides an improved method to calculate sound attenuation through the SC.

Measuring driver responses at railway level crossings.

PubMed

Tey, Li-Sian; Ferreira, Luis; Wallace, Angela

2011-11-01

Railway level crossings are amongst the most complex of road safety control systems, due to the conflicts between road vehicles and rail infrastructure, trains and train operations. Driver behaviour at railway crossings is the major collision factor. The main objective of the present paper was to evaluate the existing conventional warning devices in relation to driver behaviour. The common conventional warning devices in Australia are a stop sign (passive), flashing lights and a half boom-barrier with flashing lights (active). The data were collected using two approaches, namely: field video recordings at selected sites and a driving simulator in a laboratory. This paper describes and compares the driver response results from both the field survey and the driving simulator. The conclusion drawn is that different types of warning systems resulted in varying driver responses at crossings. The results showed that on average driver responses to passive crossings were poor when compared to active ones. The field results were consistent with the simulator results for the existing conventional warning devices and hence they may be used to calibrate the simulator for further evaluation of alternative warning systems. Copyright © 2011 Elsevier Ltd. All rights reserved.

Resource Sharing via Planed Relay for [InlineEquation not available: see fulltext.

NASA Astrophysics Data System (ADS)

Shen, Chong; Rea, Susan; Pesch, Dirk

2008-12-01

We present an improved version of adaptive distributed cross-layer routing algorithm (ADCR) for hybrid wireless network with dedicated relay stations ([InlineEquation not available: see fulltext.]) in this paper. A mobile terminal (MT) may borrow radio resources that are available thousands mile away via secure multihop RNs, where RNs are placed at pre-engineered locations in the network. In rural places such as mountain areas, an MT may also communicate with the core network, when intermediate MTs act as relay node with mobility. To address cross-layer network layers routing issues, the cascaded ADCR establishes routing paths across MTs, RNs, and cellular base stations (BSs) and provides appropriate quality of service (QoS). We verify the routing performance benefits of [InlineEquation not available: see fulltext.] over other networks by intensive simulation.

Ultrasonic and optical evaluation of surgical implant materials and devices. A durability study of pericardial bioprostheses

NASA Technical Reports Server (NTRS)

Schuster, P. R.

1984-01-01

Laser Doppler Anemometry (LDA) and accelerated fatigue testing were used in an attempt to assess the durability of two cardiac value bioprostheses. The LDA system was used to monitor the function of the cardiac valves over time. This was done through flow characterization in an aortic flow chamber, designed to closely simulate in vivo conditions, both in the near vicinity (sinuses of valsalva region) and also somewhat downstream (aortic region) from the values. The accelerated fatigue tester was operated by opening and closing the valves at a rate of 1300 R.P.M., about 18 x the normal rate. The results from the two test valves indicate a definite change in the flow characteristics downstream from the valve after certain accelerated test intervals. The high velocity cross-sectional flow area seems to increase over time in use, causing a decrease in the peak velocity. The tissue became more flaccid in certain areas, and tears were apparent at about 9.4 million cycles for the Ionescu-Shiley valve and at 24 million cycles for the Carpentier-Edwards valve. The use of Doppler ultrasound as a technique for monitoring the function of bioprostheses over time in vivo is also discussed.

Forest height estimation from mountain forest areas using general model-based decomposition for polarimetric interferometric synthetic aperture radar images

NASA Astrophysics Data System (ADS)

Minh, Nghia Pham; Zou, Bin; Cai, Hongjun; Wang, Chengyi

2014-01-01

The estimation of forest parameters over mountain forest areas using polarimetric interferometric synthetic aperture radar (PolInSAR) images is one of the greatest interests in remote sensing applications. For mountain forest areas, scattering mechanisms are strongly affected by the ground topography variations. Most of the previous studies in modeling microwave backscattering signatures of forest area have been carried out over relatively flat areas. Therefore, a new algorithm for the forest height estimation from mountain forest areas using the general model-based decomposition (GMBD) for PolInSAR image is proposed. This algorithm enables the retrieval of not only the forest parameters, but also the magnitude associated with each mechanism. In addition, general double- and single-bounce scattering models are proposed to fit for the cross-polarization and off-diagonal term by separating their independent orientation angle, which remains unachieved in the previous model-based decompositions. The efficiency of the proposed approach is demonstrated with simulated data from PolSARProSim software and ALOS-PALSAR spaceborne PolInSAR datasets over the Kalimantan areas, Indonesia. Experimental results indicate that forest height could be effectively estimated by GMBD.

Cross-bridge mechanism of residual force enhancement after stretching in a skeletal muscle.

PubMed

Tamura, Youjiro

2018-01-01

A muscle model that uses a modified Langevin equation with actomyosin potentials was used to describe the residual force enhancement after active stretching. Considering that the new model uses cross-bridge theory to describe the residual force enhancement, it is different from other models that use passive stretching elements. Residual force enhancement was simulated using a half sarcomere comprising 100 myosin molecules. In this paper, impulse is defined as the integral of an excess force from the steady isometric force over the time interval for which a stretch is applied. The impulse was calculated from the force response due to fast and slow muscle stretches to demonstrate the viscoelastic property of the cross-bridges. A cross-bridge mechanism was proposed as a way to describe the residual force enhancement on the basis of the impulse results with reference to the compliance of the actin filament. It was assumed that the period of the actin potential increased by 0.5% and the amplitude of the potential decreased by 0.5% when the half sarcomere was stretched by 10%. The residual force enhancement after 21.0% sarcomere stretching was 6.9% of the maximum isometric force of the muscle; this value was due to the increase in the number of cross-bridges.

Evaluation of rainfall simulations over West Africa in dynamically downscaled CMIP5 global circulation models

NASA Astrophysics Data System (ADS)

Akinsanola, A. A.; Ajayi, V. O.; Adejare, A. T.; Adeyeri, O. E.; Gbode, I. E.; Ogunjobi, K. O.; Nikulin, G.; Abolude, A. T.

2018-04-01

This study presents evaluation of the ability of Rossby Centre Regional Climate Model (RCA4) driven by nine global circulation models (GCMs), to skilfully reproduce the key features of rainfall climatology over West Africa for the period of 1980-2005. The seasonal climatology and annual cycle of the RCA4 simulations were assessed over three homogenous subregions of West Africa (Guinea coast, Savannah, and Sahel) and evaluated using observed precipitation data from the Global Precipitation Climatology Project (GPCP). Furthermore, the model output was evaluated using a wide range of statistical measures. The interseasonal and interannual variability of the RCA4 were further assessed over the subregions and the whole of the West Africa domain. Results indicate that the RCA4 captures the spatial and interseasonal rainfall pattern adequately but exhibits a weak performance over the Guinea coast. Findings from the interannual rainfall variability indicate that the model performance is better over the larger West Africa domain than the subregions. The largest difference across the RCA4 simulated annual rainfall was found in the Sahel. Result from the Mann-Kendall test showed no significant trend for the 1980-2005 period in annual rainfall either in GPCP observation data or in the model simulations over West Africa. In many aspects, the RCA4 simulation driven by the HadGEM2-ES perform best over the region. The use of the multimodel ensemble mean has resulted to the improved representation of rainfall characteristics over the study domain.